Query 001344
Match_columns 1096
No_of_seqs 246 out of 523
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 23:18:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001344.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001344hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a6p_A Exportin-5; exportin-5, 100.0 1E-126 4E-131 1256.9 84.2 1010 9-1095 108-1201(1204)
2 3ibv_A Exportin-T; karyopherin 100.0 9.2E-50 3.1E-54 513.1 55.8 818 7-1053 100-979 (980)
3 3gjx_A Exportin-1; transport, 100.0 6.3E-48 2.2E-52 492.9 63.3 523 10-596 125-670 (1073)
4 4hat_C Exportin-1; heat repeat 100.0 1.2E-45 4E-50 475.1 70.1 507 9-596 112-644 (1023)
5 3m1i_C Exportin-1; heat repeat 100.0 6.1E-41 2.1E-45 439.6 72.8 511 10-596 113-644 (1049)
6 2x19_B Importin-13; nuclear tr 100.0 3.2E-39 1.1E-43 420.6 59.0 812 9-1053 115-955 (963)
7 2x1g_F Cadmus; transport prote 100.0 3.3E-38 1.1E-42 411.3 61.7 817 10-1053 98-967 (971)
8 4fdd_A Transportin-1; heat rep 99.8 3.9E-18 1.3E-22 219.0 40.7 429 9-594 102-536 (852)
9 1wa5_C Importin alpha RE-expor 99.8 8.7E-16 3E-20 199.5 41.6 477 10-594 98-604 (960)
10 2bpt_A Importin beta-1 subunit 99.7 4E-15 1.4E-19 190.7 40.6 427 10-595 108-552 (861)
11 1qgr_A Protein (importin beta 99.6 2.1E-12 7E-17 165.8 44.3 427 12-595 105-560 (876)
12 1ibr_B P95, importin beta-1 su 99.2 1.4E-09 4.8E-14 128.3 24.2 345 15-497 107-460 (462)
13 4fdd_A Transportin-1; heat rep 98.5 0.00013 4.5E-09 93.2 35.7 436 10-571 334-784 (852)
14 1u6g_C TIP120 protein, CAND1; 98.4 5.5E-05 1.9E-09 100.7 32.5 453 9-574 60-601 (1230)
15 2bpt_A Importin beta-1 subunit 98.0 0.0041 1.4E-07 79.0 34.4 111 460-571 694-811 (861)
16 1b3u_A Protein (protein phosph 97.7 0.016 5.4E-07 69.8 31.4 346 122-591 178-526 (588)
17 1qgr_A Protein (importin beta 97.7 0.044 1.5E-06 69.5 36.5 111 460-571 705-827 (876)
18 1u6g_C TIP120 protein, CAND1; 97.7 0.012 4E-07 78.3 31.6 487 10-592 99-658 (1230)
19 1b3u_A Protein (protein phosph 97.5 0.012 4E-07 71.0 26.5 386 10-533 139-553 (588)
20 2vgl_B AP-2 complex subunit be 97.3 0.13 4.3E-06 62.6 31.3 388 9-563 133-526 (591)
21 1ibr_B P95, importin beta-1 su 96.8 0.61 2.1E-05 53.8 30.5 77 458-545 376-456 (462)
22 2jdq_A Importin alpha-1 subuni 95.1 4.9 0.00017 45.9 26.9 192 31-273 13-214 (450)
23 2qk1_A Protein STU2; STU2P, XM 95.1 0.19 6.5E-06 53.7 13.6 186 407-615 29-224 (249)
24 1w63_A Adapter-related protein 94.7 10 0.00036 45.8 31.0 166 362-567 399-575 (618)
25 2qk2_A LP04448P; mini spindles 94.4 0.61 2.1E-05 49.1 15.2 158 406-594 27-186 (242)
26 2x19_B Importin-13; nuclear tr 94.2 12 0.00039 47.8 29.5 74 121-196 502-575 (963)
27 2jdq_A Importin alpha-1 subuni 92.9 9.5 0.00032 43.4 23.3 133 124-279 36-178 (450)
28 2qk1_A Protein STU2; STU2P, XM 92.2 2.7 9.4E-05 44.5 16.0 180 362-575 30-224 (249)
29 2vgl_A Adaptor protein complex 89.4 44 0.0015 40.3 31.3 90 463-567 495-587 (621)
30 4b8j_A Importin subunit alpha- 87.9 16 0.00054 42.9 19.4 54 124-177 90-149 (528)
31 2vgl_A Adaptor protein complex 86.4 10 0.00036 45.8 16.8 115 443-571 143-270 (621)
32 1wa5_B Importin alpha subunit; 83.5 74 0.0025 37.1 26.1 134 124-279 103-243 (530)
33 2db0_A 253AA long hypothetical 83.5 24 0.00081 35.3 14.2 166 361-571 45-210 (253)
34 1wa5_C Importin alpha RE-expor 83.0 12 0.00041 47.8 16.0 129 458-592 506-649 (960)
35 2qk2_A LP04448P; mini spindles 82.8 4.9 0.00017 42.0 10.3 144 363-541 72-219 (242)
36 3m1i_C Exportin-1; heat repeat 82.5 1.2E+02 0.0041 38.8 34.2 140 10-176 426-570 (1049)
37 1wa5_B Importin alpha subunit; 82.3 81 0.0028 36.7 27.1 132 124-277 189-325 (530)
38 4b8j_A Importin subunit alpha- 66.8 1.9E+02 0.0064 33.4 23.8 103 156-280 84-189 (528)
39 2x1g_F Cadmus; transport prote 60.8 3.3E+02 0.011 34.2 31.1 53 514-571 708-760 (971)
40 3o2t_A Symplekin; heat repeat, 57.6 2.4E+02 0.0082 31.6 26.2 102 442-548 218-319 (386)
41 3ibv_A Exportin-T; karyopherin 57.6 71 0.0024 40.8 14.1 72 513-591 715-787 (980)
42 4db8_A Armadillo-repeat protei 52.3 65 0.0022 32.9 10.7 205 13-273 28-244 (252)
43 4db6_A Armadillo repeat protei 49.6 1.1E+02 0.0036 30.3 11.4 133 124-278 70-207 (210)
44 4hxt_A De novo protein OR329; 48.5 1.5E+02 0.0051 29.8 12.7 220 8-281 13-242 (252)
45 1w63_A Adapter-related protein 45.5 49 0.0017 39.8 9.3 90 457-571 116-205 (618)
46 4hat_C Exportin-1; heat repeat 43.9 6.1E+02 0.021 32.2 37.4 131 19-176 435-570 (1023)
47 1w9c_A CRM1 protein, exportin 42.7 2E+02 0.007 31.2 12.6 154 116-282 37-198 (321)
48 2db0_A 253AA long hypothetical 36.7 3.4E+02 0.012 27.2 20.6 156 367-570 89-245 (253)
49 1oyz_A Hypothetical protein YI 36.1 2.4E+02 0.0083 29.1 12.2 25 149-173 224-248 (280)
50 2of3_A ZYG-9; multifunctional 31.1 90 0.0031 33.1 7.4 27 151-177 210-238 (266)
51 3ul1_B Importin subunit alpha- 29.8 6.8E+02 0.023 28.6 19.0 348 122-613 71-429 (510)
52 4db8_A Armadillo-repeat protei 28.9 4.5E+02 0.015 26.3 12.8 118 458-591 106-229 (252)
53 3tjz_B Coatomer subunit gamma; 28.6 79 0.0027 35.1 6.7 90 457-571 113-202 (355)
54 3ltm_A Alpha-REP4; protein eng 27.2 3.6E+02 0.012 26.2 11.2 28 35-62 19-47 (211)
55 2of3_A ZYG-9; multifunctional 26.6 1.8E+02 0.006 30.8 8.7 66 458-538 97-172 (266)
56 1xqr_A HSPBP1 protein; armadil 24.9 1.3E+02 0.0045 32.3 7.5 116 458-591 92-216 (296)
57 4db6_A Armadillo repeat protei 22.9 1.9E+02 0.0064 28.3 7.9 64 458-532 64-129 (210)
58 3ltj_A Alpharep-4; protein eng 20.4 5.7E+02 0.02 24.5 11.1 14 160-173 152-165 (201)
No 1
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=100.00 E-value=1.2e-126 Score=1256.92 Aligned_cols=1010 Identities=21% Similarity=0.325 Sum_probs=785.4
Q ss_pred hhhHHHHHHHHHHHHHHHhhcccchhhHHHHHHHhhcCChhHHHHHHHHHHhhhhhhcccccCchHHHHHHHHHHHHhhH
Q 001344 9 EEWALKSQTAALVAEIVRREGINLWQELFPSLVSLSSKGPIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGLTQSL 88 (1096)
Q Consensus 9 e~~~irnkla~vlveIvkrewp~~Wp~fl~~L~~l~~~~~~~~El~L~iL~~L~EDv~~~~edl~~~Rr~~ll~~L~~~~ 88 (1096)
++.+||||+++++++|+|++||+.||+|+++|+++++.++.++|++|.+|+.|+||++.+ +++...|++++++.++..+
T Consensus 108 ~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~~~~~~e~~L~iL~~L~Eev~~~-~~~~~~r~~~l~~~l~~~~ 186 (1204)
T 3a6p_A 108 EENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQGETQTELVMFILLRLAEDVVTF-QTLPPQRRRDIQQTLTQNM 186 (1204)
T ss_dssp SCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTS-CCSCHHHHHHHHHHHHHTH
T ss_pred ccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHccc-cchHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999999999999999888999999999999999999984 6676789999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhh-hhhhHHHhhHHHHHHHHHHHHHhccccCCcchhcccC--cHHHHHhhcCChhHhhH
Q 001344 89 PEILPLLYSLLERHFGAALSEVG-RQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAKYG--IIHGCGFLLSSPDFRLH 165 (1096)
Q Consensus 89 p~I~~~~~~~Le~~~~~~~~~~~-~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~~~~--ll~~L~~ll~~~~~R~~ 165 (1096)
|+||.++++++++++..+..++. .++.+.+..+..++.++|+|++.|++|+|++.+++.+ +++.++.+++++++|..
T Consensus 187 ~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~~~lr~~ 266 (1204)
T 3a6p_A 187 ERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNEQELQLG 266 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGCTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCCHHHHHH
Confidence 99999999999886554433211 2233334456779999999999999999999998764 99998888889999999
Q ss_pred HHHHHHHHcCCCCCCCCChHHHH----HHHHHHHHHHHHHHHHHhhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhhcc
Q 001344 166 ACEFFKLVSPRKGPADASASEFE----SAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHC 241 (1096)
Q Consensus 166 A~ecL~~i~sr~~~~~~~~~~f~----~~l~~i~~~~~~~~~~~~~~~~~~~~~~dE~~y~f~k~l~e~L~~lg~~~~~~ 241 (1096)
|++||++|++|+++++++.+++. ..+..++.. +. ..++.+++|++++|.|++|++++++|..+..+
T Consensus 267 A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~----~~------~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l 336 (1204)
T 3a6p_A 267 AAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSA----AQ------TADGGGLVEKHYVFLKRLCQVLCALGNQLCAL 336 (1204)
T ss_dssp HHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHH----HH------TCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHH----hh------cCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999865332222221 122233322 11 23455678999999999999999999887765
Q ss_pred ccc-----ccccHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhh-hhccccccCCCCCcccCCCCCCCCcchhhhhh
Q 001344 242 IAR-----EDTILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLM-SKTKVAHSTGDGSTVNNADSGSGKVDSRKMRI 315 (1096)
Q Consensus 242 ~~~-----~~~~l~~~L~~lL~~t~hpsl~vs~~~l~~W~~lL~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (1096)
+.+ ....+..|+++|+.+|+||+.+++..+++||..++++.. +.. +
T Consensus 337 ~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~--------------------------~-- 388 (1204)
T 3a6p_A 337 LGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRD--------------------------P-- 388 (1204)
T ss_dssp HHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTC--------------------------H--
T ss_pred HhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhccccccc--------------------------H--
Confidence 542 345789999999999999999999999999999998721 110 0
Q ss_pred hhcchhhhHHHHHHHH---HHHhhcccCCCCCCCCccccccccCChh----hHHHHHHHHHHHHHHHHccCchHHHHHHH
Q 001344 316 LSFLNDDISGAILDIS---FQRLVKREKAPGTQGPLELWSDDFEGKG----DFSQYRSRLLELVKFVASNKPLVAGVKVS 388 (1096)
Q Consensus 316 ~~~~~~~il~~Ll~~~---~~rm~~~e~~~~~~~~~e~~~~Dfd~~~----ef~~~Rk~~~~ilr~i~~~~P~~~~~~l~ 388 (1096)
...++++.|++++ ..||.+|++.. .++.++..+|||+++ +|++|||++.++++.++++.|..+++++.
T Consensus 389 ---~~~~~l~~Ll~vl~~~l~k~~yp~~~~--~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~l~~v~ 463 (1204)
T 3a6p_A 389 ---LLLAIIPKYLRASMTNLVKMGFPSKTD--SPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQMAG 463 (1204)
T ss_dssp ---HHHHHHHHHHHHHHHHHSCCCCSSCCS--STHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHhcCccccC--CcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 0137899999999 55666655321 111234446777664 36999999999999999999999999999
Q ss_pred HHHHHHHhhcc-----------------cCCCChhhHHHHHhHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHHHHH
Q 001344 389 ERVMAIINSLL-----------------ISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLL 451 (1096)
Q Consensus 389 ~~l~~~l~~~~-----------------~~~~~s~~~~~~ea~~~~leav~~g~~~~~~~~~~~~~~~~~~l~~~l~~Ll 451 (1096)
+++...+.+.. .++..++.|..||++.+++||+++|++++... ++.+. ..+.+++
T Consensus 464 ~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~---~~l~~-----~~~~~Ll 535 (1204)
T 3a6p_A 464 EWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNR---EEIPV-----NDGIELL 535 (1204)
T ss_dssp HHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCT---TCCCH-----HHHHHHH
T ss_pred HHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhccccc---ccccH-----HHHHHHH
Confidence 99977765421 12344678999999999999999999886531 11111 2477888
Q ss_pred HHHHhcCCCCchHHHHHHHHHHhhhhhhhcCCCchhHHHHHHHHhhccC-CCccCCCCchHHHHHHHHHHHHHHHHHHhc
Q 001344 452 RQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSL-PFVFKDPSTNSARHARLQICTSFIRIAKTS 530 (1096)
Q Consensus 452 ~~ll~~~~~dP~l~s~~~~~l~~l~~fl~~~~~~l~~VL~klf~~l~~~-p~~~~~~~~~~~k~vR~~A~~~f~rl~~~~ 530 (1096)
+.|+++++++|.++...+.++++|++|+.++|+++++||++||..+... |+..++++++++|++|++||++|.+||+.+
T Consensus 536 ~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~ 615 (1204)
T 3a6p_A 536 QMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDY 615 (1204)
T ss_dssp HHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHh
Confidence 8899889999999999999999999999999999999999999988753 444566778899999999999999999999
Q ss_pred ccchhhHHHHHHHHHHHHHHccc-ccHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHhHHHHhhhchHhHhhhhcCChHH
Q 001344 531 DKSILPHMKDIADTMAYLQREGR-LLRGEHNLLGEAFLVMAS-AAGIQQQQEVLAWLLEPLSQQWMQLEWQNNYLSEPLG 608 (1096)
Q Consensus 531 ~~~l~P~l~~i~~~i~~l~~~~~-L~~~e~~~L~Eal~~i~~-~~~~~~q~~~l~~ll~P~~~~W~~~~~~~~~l~~~~~ 608 (1096)
++.+.||+++|.+.+.+++.+++ ++.+|++.||||++++++ ..+.++|.++++.+++|+.++|.+++|++ ++++|.+
T Consensus 616 ~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~~~~~~-~~s~~~~ 694 (1204)
T 3a6p_A 616 PQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWLSQDMHR-VLSDVDA 694 (1204)
T ss_dssp HHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSCHHHHH-HHHCHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHccHHHHH-hhcCHHH
Confidence 99999999999999999999888 999999999999999986 46778899999999999999999999997 9999999
Q ss_pred HHHhccCC-------------ccchhhHhHHHHHHHHHhhhcccccc---------ccccCCCCCCcccccchhhhhhhh
Q 001344 609 LVRLCSDT-------------SFMWSLFHTVTFFERALKRSGIRKAN---------LNLQSSSAENSAVMHPMASHLSWM 666 (1096)
Q Consensus 609 f~~~~~~~-------------~~~~~~~~~~~~~~~~lkr~~~~~~~---------~~s~~~~~~~~~~~~p~~~~~~~i 666 (1096)
|++++|.. ..|+.++++++.+++++||++++..+ +++ .++++|.++||+++++++|
T Consensus 695 f~~~~G~~~~~~~~~~~d~~~~~r~~l~~~~~~l~~~l~r~~~~~~~~~~~~~gf~~~~--~~~~~p~~~~p~~~~i~~i 772 (1204)
T 3a6p_A 695 FIAYVGTDQKSCDPGLEDPCGLNRARMSFCVYSILGVVKRTCWPTDLEEAKAGGFVVGY--TSSGNPIFRNPCTEQILKL 772 (1204)
T ss_dssp HHHHHTSSCC--CTTCCTHHHHHHHHHHHHHHHHHHHHHHCCCCSSHHHHHHTTCEEEE--CSSCCEEECCTTHHHHHHH
T ss_pred HHHHhCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHHhcCCCChhhhhcCCceecc--CCCCCccccCchHHHHHHH
Confidence 99999921 13799999999999999998654321 221 2367789999999999999
Q ss_pred hhhHHHHHHHHHhccCccccccCchHHHHHcccCHHHHhhhcCCCCCCCccccccccCCCCCCCCcCCCCCCchHHHHHH
Q 001344 667 LPPLLKLLRAIHSIWSPSISQLLPGEIKAAMTMSDAEQFSLLGEGNPKFSRGAVAFADGSQLDTSKEGYGEPNESDIRNW 746 (1096)
Q Consensus 667 Lp~ll~Llr~~h~l~~P~~~~~l~~~~~~~~~~~~~Er~~~lg~~~~~~sk~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 746 (1096)
||+|++|+|++|++|+|++|+++|++|+++++|+++||+|++|.+. .++ +|++.+ +.....+++|+|
T Consensus 773 lP~ll~Ll~~~~~l~~p~~~~~l~~~~~~~~~~~~~er~~~~g~~~--~~~---~~~~~~--------~~~~~~~~l~~~ 839 (1204)
T 3a6p_A 773 LDNLLALIRTHNTLYAPEMLAKMAEPFTKALDMLDAEKSAILGLPQ--PLL---ELNDSP--------VFKTVLERMQRF 839 (1204)
T ss_dssp HHHHHHHHHHHHHTTSHHHHTTSCGGGTTTTSCCHHHHHHHTCCCC--CCC---CTTCCC--------SCCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCcHhhhhcCHHHHHHHhccHHHHHHhcCCCc--ccc---cccccC--------CCcCcHHHHHHH
Confidence 9999999999999999999999999999999999999999999876 233 244432 124678999999
Q ss_pred HHHHHHHHHHHHHhhh-cCCcccccCCCchH-HHHHHhcCCCCCccccHHHHHHHHHHHhhccCChhhHHHHHHHhhHHH
Q 001344 747 LKGVRDSGYNVLGLSA-TIGDPFFKSLDSGS-VVVALMENIQSMEFRHIRQLVHSVLIHMVKFCPLDMWEFWLEKLLNPL 824 (1096)
Q Consensus 747 l~~~re~~y~ilg~~~-~l~~~Fy~~~~l~~-l~~al~~~~~~l~~~~lr~ll~~~~~plv~~CP~~~~~~~l~plL~~l 824 (1096)
++.+||+||++||+++ ++|++||++++++. +.+|+|+++++||+||||.+||+|++|+|++||+++|++|++|+|+|+
T Consensus 840 ~~~~re~~y~~lg~~~~~l~~~fy~~~~l~~~l~~~~f~~l~~~~~~~l~~li~~~~~p~i~~CP~~~~~~~l~plL~~l 919 (1204)
T 3a6p_A 840 FSTLYENCFHILGKAGPSMQQDFYTVEDLATQLLSSAFVNLNNIPDYRLRPMLRVFVKPLVLFCPPEHYEALVSPILGPL 919 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTTTSTTHHHHHHHHTTSSTTTSCHHHHHHHHHHTHHHHHHTCCGGGTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccCCcchHHHHHHHHHhcchhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 9999999999999995 99999999999977 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHHhhhhc---------cCCchhHHHHHHHHHHHHhHHHHHHHHHHhcCCCCCCCCCCCCCCCccccc-
Q 001344 825 FIHCQQVLSSSWSSLMHEV---------AGSDLKVEVMEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFYRVD- 894 (1096)
Q Consensus 825 f~~~~~rL~~~W~~i~~~~---------~~~~~~~E~~ee~llr~LTr~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~- 894 (1096)
|++|++||+++|+.+.+++ +++++++||+||++||+|||++++++.+++.++.+ +. ...+|+.+.+|
T Consensus 920 f~~~~~~L~~~W~~i~~~~~~~~~~~~~~~~~~~~E~~~e~llr~lTr~~~~ll~~~~~~~~~-~~--~~~~~~~~~~~~ 996 (1204)
T 3a6p_A 920 FTYLHMRLSQKWQVINQRSLLCGEDEAADENPESQEMLEEQLVRMLTREVMDLITVCCVSKKG-AD--HSSAPPADGDDE 996 (1204)
T ss_dssp HHHHHHHHHHHHHHHHTC--------------CHHHHHHHHHHHHHHHHHHHHHHHHHBC--------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CC--cccccccccccc
Confidence 9999999999999999851 24679999999999999999999999999887632 21 12234443332
Q ss_pred -ccccc--cchhhhhhhhHHHHhcCcCchhHHHHHHHhhhcccchh-hhHHHHHhHHHHHHHhhcccchhhhHHHHHHHH
Q 001344 895 -VLSLK--DLDAFASNSMVGFLLKHKDLALPALQISLEAFTWTDGE-AVTKVSSFCSAVVLLAIQSNNIELRQFVSKDLF 970 (1096)
Q Consensus 895 -~~~~~--~~~~~~~~~l~~~~l~~~~i~~~~l~~~~~~l~w~Dt~-~~~ka~~~~~~l~~~~~~~~~~~l~~~~~~~~~ 970 (1096)
+.++. +......++|++|++.|+++++|+|.+|+++|+|+||+ |+.+|+.||+++++..+. +..+.++ +.++|
T Consensus 997 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~l~~~~~~l~~~D~~~~~~~~~~~~~~~v~~~~~--~~~~~~~-~~~l~ 1073 (1204)
T 3a6p_A 997 EMMATEVTPSAMAELTDLGKCLMKHEDVCTALLITAFNSLAWKDTLSCQRTTSQLCWPLLKQVLS--GTLLADA-VTWLF 1073 (1204)
T ss_dssp -------------CBCHHHHHHHSSHHHHHHHHHHHHHHTTSSCHHHHHHHHHHTHHHHHTTSCS--SCCCHHH-HHHHH
T ss_pred ccccccccccchhhcchHHHHHhcCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHhc--ccCchHH-HHHHH
Confidence 22221 22244558999999999999999999999999999999 999999999999987753 3345565 99999
Q ss_pred HHHHHHhccCch-HhhHHHHHHHHHHHHHhcCCCCchHHHHHHhCCCCCHHHHHHHHHHHhcCC----ChHHHHHHHHHH
Q 001344 971 SAIIRGLALESN-AVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDALTKTA----SPREQKQHMRSL 1045 (1096)
Q Consensus 971 ~a~l~~L~~~~~-~~~~~~l~~L~~~iy~~l~~~~~~~~~vL~~lP~i~~~~l~~f~~~l~~~~----s~k~qr~~~k~l 1045 (1096)
+++|+||+.+++ +++++|+++|++.||+.|++++++||+||++||||+++++++|++++.++. ++|+||++||||
T Consensus 1074 ~~vl~~l~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~~vl~~lP~i~~~~~~~f~~~l~~~~~~~~~~k~qr~~~~~l 1153 (1204)
T 3a6p_A 1074 TSVLKGLQMHGQHDGCMASLVHLAFQIYEALRPRYLEIRAVMEQIPEIQKDSLDQFDCKLLNPSLQKVADKRRKDQFKRL 1153 (1204)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHHHHHHSTTTCSTHHHHHTTSSSCCHHHHHHHHHHSSCC-----------------
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHHhCCCCccHHHHHHhCCCCCHHHHHHHHHHHhcccccccchHHHHHHHHHH
Confidence 999999998885 899999999999999999999999999999999999999999999997644 599999999999
Q ss_pred HHhhcCCchhhhhhhhcccc-ccccCCCCCCCCCCCCCCcccCCccccccC
Q 001344 1046 LVLGTGNNLKALAAQKSVNV-ITNVSTRPRSSDNAPESRTEEGESIGLAAI 1095 (1096)
Q Consensus 1046 l~~~~g~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1095 (1096)
|++++|+++++ |++..| |.|+|+.++.++++.+...-|.+..||+.|
T Consensus 1154 l~~~~g~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 1201 (1204)
T 3a6p_A 1154 IAGCIGKPLGE---QFRKEVHIKNLPSLFKKTKPMLETEVLDNDGGGLATI 1201 (1204)
T ss_dssp ---------------------------------------------------
T ss_pred HHHhcCCcHHH---hhcccccccCCCCCCCCCCCCCcCCCCCCccccHHHh
Confidence 99999999875 888887 999999977666665555445555599876
No 2
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=100.00 E-value=9.2e-50 Score=513.14 Aligned_cols=818 Identities=13% Similarity=0.137 Sum_probs=537.0
Q ss_pred chhhhHHHHHHHHHHHHHHHhhcccchhhHHHHHHHhhcCC-h-hHHHHHHHHHHhhhhhhccc---ccCchHHHHHHHH
Q 001344 7 PCEEWALKSQTAALVAEIVRREGINLWQELFPSLVSLSSKG-P-IQAELVSMMLRWLPEDITVH---NEDLEGDRRRLLL 81 (1096)
Q Consensus 7 ~~e~~~irnkla~vlveIvkrewp~~Wp~fl~~L~~l~~~~-~-~~~El~L~iL~~L~EDv~~~---~edl~~~Rr~~ll 81 (1096)
..+++|||||++.++++|++|+||+.||+|+++|+++++.+ + ...+.+|+||..|+|||+.. .++...+|+++++
T Consensus 100 ~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lk 179 (980)
T 3ibv_A 100 LDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVK 179 (980)
T ss_dssp TTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHH
Confidence 46789999999999999999999999999999999999654 3 46677888888888999863 1223467888999
Q ss_pred HHHHhh-HhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHHHHHHHHHhccccCCcchhcccCcHHHHHhhcCCh
Q 001344 82 RGLTQS-LPEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAKYGIIHGCGFLLSSP 160 (1096)
Q Consensus 82 ~~L~~~-~p~I~~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~~~~ll~~L~~ll~~~ 160 (1096)
+.|+.+ ++.|++.|+.+++++.. +.+..++..+|+|++.|++|+|++++++++++++++.+++++
T Consensus 180 d~m~~~~~~~i~~~~~~iL~~~~~--------------~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~~ 245 (980)
T 3ibv_A 180 DAIRANDMSDIVSFVYEMMLAYSN--------------AKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQIE 245 (980)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHH--------------TTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTSH
T ss_pred HHHHhccHHHHHHHHHHHHHHHhc--------------cCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCCh
Confidence 999877 99999999999987431 123457899999999999999999999999999999889999
Q ss_pred hHhhHHHHHHHHHcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhhc
Q 001344 161 DFRLHACEFFKLVSPRKGPADASASEFESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLH 240 (1096)
Q Consensus 161 ~~R~~A~ecL~~i~sr~~~~~~~~~~f~~~l~~i~~~~~~~~~~~~~~~~~~~~~~dE~~y~f~k~l~e~L~~lg~~~~~ 240 (1096)
++|.+|++||++|++|++.++++.++++ .+ + ....+..... ++++.+|.+++|++++++|..++.
T Consensus 246 ~~r~~A~ecL~ei~~k~~~~~~k~~li~----~l-----~-L~~~~~~l~~-----~~~D~d~~~~la~L~~~~ge~l~~ 310 (980)
T 3ibv_A 246 ELRCAACETMTEIVNKKMKPLEKLNLLN----IL-----N-LNLFFSKSQE-----QSTDPNFDEHVAKLINAQGVELVA 310 (980)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHH----HH-----H-HHHHHCC----------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCChhhHHHHHH----HH-----h-HHHHHHHHhc-----ccccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999976533332222 21 1 1122221111 145667999999999999999888
Q ss_pred cccccc------------ccHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhhhccccccCCCCCcccCCCCCCCCc
Q 001344 241 CIARED------------TILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNADSGSGKV 308 (1096)
Q Consensus 241 ~~~~~~------------~~l~~~L~~lL~~t~hpsl~vs~~~l~~W~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (1096)
+ +..+ +.+..+++++|.++.||+++++..+++||..++........ . . ..
T Consensus 311 ~-~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~-~---~-------------~~ 372 (980)
T 3ibv_A 311 I-KSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESS-S---K-------------EL 372 (980)
T ss_dssp H-HTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTT-S---C-------------CC
T ss_pred H-ccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccc-c---c-------------cc
Confidence 7 5443 46778999999999999999999999999999986211100 0 0 00
Q ss_pred chhhhhhhhcchhhhHHHHHHHHHHHhhcccCCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHHccCchHHHH---
Q 001344 309 DSRKMRILSFLNDDISGAILDISFQRLVKREKAPGTQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGV--- 385 (1096)
Q Consensus 309 ~~~~~~~~~~~~~~il~~Ll~~~~~rm~~~e~~~~~~~~~e~~~~Dfd~~~ef~~~Rk~~~~ilr~i~~~~P~~~~~--- 385 (1096)
. ....+++++|+.++++||.+|++.+.+ .++|+|++++|.+|||+++.+++.++.+.|..+++
T Consensus 373 ---~-----~~~~~~l~~Ll~~li~k~~yp~d~~~~------~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~ 438 (980)
T 3ibv_A 373 ---S-----ASLKEFLKSLLEAIIKKMKYDESQEWD------DDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMY 438 (980)
T ss_dssp ---C-----HHHHHHHHHHHHHHHHTTSCCTTCCCC------CCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred ---c-----HHHHHHHHHHHHHHHHHccCCCccccc------cccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 0 012488999999999999998763211 12355677789999999999999999999999999
Q ss_pred -HHHHHHHHHHhhcccCCCChhhHHHHHhHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHh---cCCCC
Q 001344 386 -KVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLS---LKWTE 461 (1096)
Q Consensus 386 -~l~~~l~~~l~~~~~~~~~s~~~~~~ea~~~~leav~~g~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll~---~~~~d 461 (1096)
++...+.+.+.+. ++.+|...|+....+.++.+||......- .++.+..+.+. +++..++. .+..+
T Consensus 439 ~~i~~~l~~~l~~~-----~~~~W~~~EaaL~~l~~iaE~i~~~~~~~-~~~~~~lp~l~----~ll~~ll~s~i~~~~h 508 (980)
T 3ibv_A 439 SAITSSLSTAATLS-----PENSWQLIEFALYETYIFGEGLRGPDAFF-NEVDKSPTVLS----QILALVTTSQVCRHPH 508 (980)
T ss_dssp HHHHHHHHHHTTSC-----HHHHHHHHHHHHHHHHHTTTTCCSGGGTB-CSSSCCBCHHH----HHHHHHHHSSTTTCCC
T ss_pred HHHHHHHHHHhccc-----CCCCHHHHHHHHHHHHHHHhhcccccccc-CcccchhHHHH----HHHHHHHhCCCCCCCC
Confidence 5555555544211 23469999999999999988876522110 01111123333 44444443 34678
Q ss_pred chHHHHHHHHHHhhhhhhhcCCCchhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHHHHHHhcccchhhHHHHH
Q 001344 462 PPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDI 541 (1096)
Q Consensus 462 P~l~s~~~~~l~~l~~fl~~~~~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl~~~~~~~l~P~l~~i 541 (1096)
|.++...++++++|+.|+..||++++++|+.++. |.+..+ .+++||.+||++|.|+|+.+...+.||++.|
T Consensus 509 p~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~-----~~gl~~----~~~~V~~~a~~af~~f~~~~~~~L~~~~~~i 579 (980)
T 3ibv_A 509 PLVQLLYMEILVRYASFFDYESAAIPALIEYFVG-----PRGIHN----TNERVRPRAWYLFYRFVKSIKKQVVNYTESS 579 (980)
T ss_dssp HHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTS-----TTTTTC----CCTTTHHHHHHHHHHHHHHTTTTCSSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhc-----cccccC----CChhHHHHHHHHHHHHHHHhhHHhhhHHHHH
Confidence 8999999999999999999999999999998744 112222 2347899999999999999999999999999
Q ss_pred HHHHHHHHHcccc--c-----------------HHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHhHHHHhhhchHhHhh
Q 001344 542 ADTMAYLQREGRL--L-----------------RGEHNLLGEAFLVMAS--AAGIQQQQEVLAWLLEPLSQQWMQLEWQN 600 (1096)
Q Consensus 542 ~~~i~~l~~~~~L--~-----------------~~e~~~L~Eal~~i~~--~~~~~~q~~~l~~ll~P~~~~W~~~~~~~ 600 (1096)
++.++.++..+.. . ..++..||||++++++ ..+.+++.++++.+++|+.+.|...- +.
T Consensus 580 l~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l-~~ 658 (980)
T 3ibv_A 580 LAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAAL-SS 658 (980)
T ss_dssp HHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHH-hh
Confidence 9999887763211 1 1268899999999986 34678999999999999999886322 11
Q ss_pred hhcCChHHHHHhccCCccchhhHhHHHHHHHHHhhhccccccccccCCCCCCcccccchhhhhhhhhhhHHHHHHHHHhc
Q 001344 601 NYLSEPLGLVRLCSDTSFMWSLFHTVTFFERALKRSGIRKANLNLQSSSAENSAVMHPMASHLSWMLPPLLKLLRAIHSI 680 (1096)
Q Consensus 601 ~~l~~~~~f~~~~~~~~~~~~~~~~~~~~~~~lkr~~~~~~~~~s~~~~~~~~~~~~p~~~~~~~iLp~ll~Llr~~h~l 680 (1096)
.-++. +... .++|.+..++...| |++..+. ..+|+...+..+++-+++.+..++.
T Consensus 659 -~~~~~--------~~~~--~i~~~i~al~~lak--gf~~~~~-----------~~~p~~~~f~~~~~~il~~l~~~~~- 713 (980)
T 3ibv_A 659 -DLSAL--------ENII--SVYCSLMAIGNFAK--GFPARGS-----------EEVAWLASFNKASDEIFLILDRMGF- 713 (980)
T ss_dssp -SCC----------CHHH--HHHHHHHHHHHHHH--TSCSCC------------CCCSHHHHHHHHHHHHHHHHHHSCC-
T ss_pred -cccCc--------cHHH--HHHHHHHHHHHHhc--cCCcccC-----------CCCcHHHHHHHHHHHHHHHHHhcCC-
Confidence 11110 1111 55566666666555 4433210 1145555566666666554432110
Q ss_pred cCccccccCchHHHHHcccCHHHHhhhcCCCCCCCccccccccCCCCCCCCcCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q 001344 681 WSPSISQLLPGEIKAAMTMSDAEQFSLLGEGNPKFSRGAVAFADGSQLDTSKEGYGEPNESDIRNWLKGVRDSGYNVLGL 760 (1096)
Q Consensus 681 ~~P~~~~~l~~~~~~~~~~~~~Er~~~lg~~~~~~sk~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~re~~y~ilg~ 760 (1096)
+ ..|||.+...+.-
T Consensus 714 -~-----------------------------------------------------------------~~irea~~~~~~r 727 (980)
T 3ibv_A 714 -N-----------------------------------------------------------------EDIRGAVRFTSGR 727 (980)
T ss_dssp -S-----------------------------------------------------------------HHHHHHHHHHHHH
T ss_pred -c-----------------------------------------------------------------HHHHHHHHHHHHH
Confidence 0 0345555544444
Q ss_pred hh-cCCcccccCCCchHHHHHHhcCCCCCccccHHHHHHHHHHHhhccCChhhHHHHHHHhhHHHHHHHHHHHHhhhHHh
Q 001344 761 SA-TIGDPFFKSLDSGSVVVALMENIQSMEFRHIRQLVHSVLIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSSL 839 (1096)
Q Consensus 761 ~~-~l~~~Fy~~~~l~~l~~al~~~~~~l~~~~lr~ll~~~~~plv~~CP~~~~~~~l~plL~~lf~~~~~rL~~~W~~i 839 (1096)
+- .+|.++ .|-++.+...+..+.+ .+.+..++.. +.-+|...-.+++ ..+..+|+|++.++...|.+
T Consensus 728 ~i~~lg~~~--~p~lp~~i~~ll~~~~---~~e~~~fL~l-~~qli~~f~~~~~-~~l~~ll~~l~~~if~~l~~----- 795 (980)
T 3ibv_A 728 IINVVGPDM--LPKVPQLISILLNSID---MNELVDVLSF-ISQLIHIYKDNMM-EITNRMLPTLLMRIFSSLSA----- 795 (980)
T ss_dssp HTTTTHHHH--TTTHHHHHHHHHHHCC---TTTHHHHHHH-HHHHHHHTTTTSH-HHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHccHhH--HHHHHHHHHHHHhcCC---HHHHHHHHHH-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcC-----
Confidence 44 455442 2334445555543322 2333333321 2333333333333 33666667776666666544
Q ss_pred hhhccCCchhHHHHHHHHHHHHhHHHHHHHHHHhcCCCCCCCCCCCCCCCcccccccccccchhhhhhhhHHHHh--cCc
Q 001344 840 MHEVAGSDLKVEVMEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFYRVDVLSLKDLDAFASNSMVGFLL--KHK 917 (1096)
Q Consensus 840 ~~~~~~~~~~~E~~ee~llr~LTr~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l--~~~ 917 (1096)
++ +-++|+ +--++|-|.+..|+..++..+.. ..++ .|.
T Consensus 796 ---~~--~~td~~---r~~~~l~r~~~~fl~~i~~~~~~--------------------------------~v~~s~~n~ 835 (980)
T 3ibv_A 796 ---AP--QGTDDA---VKQNDLRKSYISFILQLLNKGFG--------------------------------SILFTEENQ 835 (980)
T ss_dssp ---------CCHH---HHHHHHHHHHHHHHHHHHHTTCT--------------------------------GGGGSHHHH
T ss_pred ---CC--CCcHHH---HHHHHHHHHHHHHHHHHHhCCch--------------------------------hhhcCCcch
Confidence 11 122343 24577999999999988875321 1111 133
Q ss_pred CchhHHHHHHHhh-hcccchhhhHHHHHhHHHHHHHhhccc-chhhhHHHHHHHHHHHHHHhccCch--HhhH-----HH
Q 001344 918 DLALPALQISLEA-FTWTDGEAVTKVSSFCSAVVLLAIQSN-NIELRQFVSKDLFSAIIRGLALESN--AVIS-----AD 988 (1096)
Q Consensus 918 ~i~~~~l~~~~~~-l~w~Dt~~~~ka~~~~~~l~~~~~~~~-~~~l~~~~~~~~~~a~l~~L~~~~~--~~~~-----~~ 988 (1096)
...+.++..+++. ...+|+.+.+.|+.+..-++.....++ -+-+.+|+-+ +.+.|......+.| .|.| .|
T Consensus 836 ~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~~~~~~~~~~gf~~f~~~-~~~~~f~~p~~~~f~~~Daq~~~~~~e 914 (980)
T 3ibv_A 836 VYFDPLINSILHFANLVGEPATQKSSIALVSKMVSLWGGKDGIAGFENFTLS-LTPLCFEMPVNPNFNTRDGQSLVVLGE 914 (980)
T ss_dssp TTHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHC-------CCHHHHHHH-HHHHHHHGGGC----------CHHHHH
T ss_pred HHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHCCCCcchHHHHHHHH-HHHHHHHhhcCCCCChhhHHHHHHHHH
Confidence 3445555555543 335888888888887777776542211 2448999999 99999999988886 4554 79
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHh--CC--CCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCCc
Q 001344 989 LVGLCREIFIYMCDRDPAPRQVLLS--LP--CITPQDLLAFEDALTKTASPREQKQHMRSLLVLGTGNN 1053 (1096)
Q Consensus 989 l~~L~~~iy~~l~~~~~~~~~vL~~--lP--~i~~~~l~~f~~~l~~~~s~k~qr~~~k~ll~~~~g~~ 1053 (1096)
++.+...||...++ ..-+.|.+ +| |+.++..+.|-++|. ....|.=|.-|+.|+...+|.+
T Consensus 915 ~~~~~k~~~~~~g~---~~~~~l~~~~lp~~~~~~~~~~~~~~~l~-~~~~k~f~~~~~~~~~~~~~~~ 979 (980)
T 3ibv_A 915 LAGLQKIILEKLGD---IYKSYLVTVYFPTVNFPDVMASEYLQALS-NLDSRSFKQFFQKFIQALKSGN 979 (980)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHTTTTC----CCHHHHHHHC-----------------CHHHHC--
T ss_pred HHHHHHHHHHhcCH---HHHHHHHHhcCCcCCCCHHHHHHHHHHHh-ccchhhHHHHHHHHHHHhhcCC
Confidence 99999999998874 44566644 67 677888899999994 4446666777778877776644
No 3
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=100.00 E-value=6.3e-48 Score=492.94 Aligned_cols=523 Identities=16% Similarity=0.201 Sum_probs=406.3
Q ss_pred hhHHHHHHHHHHHHHHHhhcccchhhHHHHHHHhhcCChhHHHHHHHHHHhhhhhhccccc-CchHHHHHHHHHHHHhhH
Q 001344 10 EWALKSQTAALVAEIVRREGINLWQELFPSLVSLSSKGPIQAELVSMMLRWLPEDITVHNE-DLEGDRRRLLLRGLTQSL 88 (1096)
Q Consensus 10 ~~~irnkla~vlveIvkrewp~~Wp~fl~~L~~l~~~~~~~~El~L~iL~~L~EDv~~~~e-dl~~~Rr~~ll~~L~~~~ 88 (1096)
++.++||++++++.|+|++||+.||+|+++|+++++.++.+++++|.||+.|+|||+.+.. +++..||+.+++.|+..+
T Consensus 125 ~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~ 204 (1073)
T 3gjx_A 125 EKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRTSESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEF 204 (1073)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH
Confidence 4566799999999999999999999999999999988899999999999999999998533 478899999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHHHHHHHHHhccccCCcchhcccCcHHHH-HhhcCChhHhhHHH
Q 001344 89 PEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAKYGIIHGC-GFLLSSPDFRLHAC 167 (1096)
Q Consensus 89 p~I~~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~~~~ll~~L-~~ll~~~~~R~~A~ 167 (1096)
|.|+++|+.+++.. .+..++.++|+|+++|++|||+++++++++++++ +.+++++++|..|+
T Consensus 205 ~~Il~ll~~iL~~~-----------------~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L~~~~~r~aA~ 267 (1073)
T 3gjx_A 205 SQIFQLCQFVMENS-----------------QNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFLNVPMFRNVSL 267 (1073)
T ss_dssp HHHHHHHHHHHHHC-----------------CCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTSSSHHHHHHHH
T ss_pred HHHHHHHHHHhccc-----------------CCHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhcCChHHHHHHH
Confidence 99999999998741 2345889999999999999999999999999988 78999999999999
Q ss_pred HHHHHHcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhc-CCCC--CCCChhhhHHHHHHHHHHHHhhhhhhccccc
Q 001344 168 EFFKLVSPRKGPADASASEFESAMHDVFQILMKVSGEFLYRS-GTSA--GAIDESEFEFAEYICESMVSLGTSNLHCIAR 244 (1096)
Q Consensus 168 ecL~~i~sr~~~~~~~~~~f~~~l~~i~~~~~~~~~~~~~~~-~~~~--~~~dE~~y~f~k~l~e~L~~lg~~~~~~~~~ 244 (1096)
+||++|++++. +.|+..+..+|...++....+++.. ...+ ...++++.+|.+.+|.+++.+|..+...+++
T Consensus 268 dcL~eIv~k~~------~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~ 341 (1073)
T 3gjx_A 268 KCLTEIAGVSV------SQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEK 341 (1073)
T ss_dssp HHHHHHHHSCS------GGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccc------cchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999862 2355556677776665554433211 0000 1124556789999999999999999988876
Q ss_pred ccc---cHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhhhccccccCCCCCcccCCCCCCCCcchhhhhhhhcchh
Q 001344 245 EDT---ILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLND 321 (1096)
Q Consensus 245 ~~~---~l~~~L~~lL~~t~hpsl~vs~~~l~~W~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (1096)
++. .+...+++++.++.|++.++++.|++||..|.+.++.+.+ ......+.. +++.......+ ..++.
T Consensus 342 ~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~---~~~~~~~~~-~~~~~~~~~~~-----~~~y~ 412 (1073)
T 3gjx_A 342 RLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESP---FSTSASPLL-SGSQHFDIPPR-----RQLYL 412 (1073)
T ss_dssp CGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCC---SCCCCSSCT-TSSCCSCSCHH-----HHTTH
T ss_pred CccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhcc---ccccccccc-cccccccchhH-----HHHHH
Confidence 533 3444566789999999999999999999999998765421 000000000 00000000111 12356
Q ss_pred hhHHHHHHHHHHHhhcccCCC--CCCCCccccccccCChhhHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHhhcc
Q 001344 322 DISGAILDISFQRLVKREKAP--GTQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLL 399 (1096)
Q Consensus 322 ~il~~Ll~~~~~rm~~~e~~~--~~~~~~e~~~~Dfd~~~ef~~~Rk~~~~ilr~i~~~~P~~~~~~l~~~l~~~l~~~~ 399 (1096)
+++.+|+.+++.||.||+++. +++ .++..+ ||-.|.+-.+.|+.+++++.+++++++.+++..+.+.+...+++.
T Consensus 413 ~i~~~L~~vlI~~m~~P~ev~i~e~e-~ge~~r-e~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i~~~~l~~~~~~~- 489 (1073)
T 3gjx_A 413 TVLSKVRLLMVSRMAKPEEVLVVEND-QGEVVR-EFMKDTDSINLYKNMRETLVYLTHLDYVDTEIIMTKKLQNQVNGT- 489 (1073)
T ss_dssp HHHHHHHHHHHHTCCCSCCEEEEECS-SSCEEE-EECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSC-
T ss_pred HHHHHHHHHHHHhcCCCccccccCcc-cchHHH-HHHhhcchHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCC-
Confidence 999999999999999998742 111 133333 444444457899999999999999999999999999998877542
Q ss_pred cCCCChhhHHHHHhHHHHHHHHHH--hhccCCCCCCCCChHHHHHHHHHHHHHHHHHHhcCCCCc--hHHHHHHHHHHhh
Q 001344 400 ISTMPAQDLAVMESMQSALENVVS--AVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEP--PLVVALGHYLDAL 475 (1096)
Q Consensus 400 ~~~~~s~~~~~~ea~~~~leav~~--g~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll~~~~~dP--~l~s~~~~~l~~l 475 (1096)
.+.|.....+|+|+.+ |++.. +.| .+.+..++..|++++...+++|+ .+++.+||++++|
T Consensus 490 --------~~sW~~lea~~~aigaIag~~~~-------~~E-~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY 553 (1073)
T 3gjx_A 490 --------EWSWKNLNTLCWAIGSISGAMHE-------EDE-KRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQY 553 (1073)
T ss_dssp --------CCCHHHHHHHHHHHHHTTTSSCH-------HHH-HHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHC
T ss_pred --------CCCHHHHhHHHHHHHHHHCcCCc-------ccc-cchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhh
Confidence 2246666666666633 33331 123 36788888888888887777666 4789999999999
Q ss_pred hhhhhcCCCchhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHHHHHHhcccch--------hhHHHHHHHHHHH
Q 001344 476 GPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSI--------LPHMKDIADTMAY 547 (1096)
Q Consensus 476 ~~fl~~~~~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl~~~~~~~l--------~P~l~~i~~~i~~ 547 (1096)
++|++.||+++.+|++++|++|++ ..+.|+.+||++|.+||+++...+ .||+++|++.+..
T Consensus 554 ~~wl~~h~~~L~~vl~~L~~~m~~-----------~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~ 622 (1073)
T 3gjx_A 554 PRFLRAHWKFLKTVVNKLFEFMHE-----------THDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINT 622 (1073)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHTTC-----------CSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHH
Confidence 999999999999999999999852 233689999999999999987765 6899999888876
Q ss_pred HHHcccccHHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHhHHHHhhhchH
Q 001344 548 LQREGRLLRGEHNLLGEAFLVMASAAGIQ-QQQEVLAWLLEPLSQQWMQL 596 (1096)
Q Consensus 548 l~~~~~L~~~e~~~L~Eal~~i~~~~~~~-~q~~~l~~ll~P~~~~W~~~ 596 (1096)
... +|.......||||++++++..+.+ .+.++++.+|+|++++|.+-
T Consensus 623 ~~~--~l~~~~~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l 670 (1073)
T 3gjx_A 623 IIC--DLQPQQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSI 670 (1073)
T ss_dssp HHT--TCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHH--hcCHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 654 699999999999999999966665 58999999999999999754
No 4
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=100.00 E-value=1.2e-45 Score=475.08 Aligned_cols=507 Identities=16% Similarity=0.239 Sum_probs=400.9
Q ss_pred hhhHHHHHHHHHHHHHHHhhcccchhhHHHHHHHhhcCChhHHHHHHHHHHhhhhhhcccc-cCchHHHHHHHHHHHHhh
Q 001344 9 EEWALKSQTAALVAEIVRREGINLWQELFPSLVSLSSKGPIQAELVSMMLRWLPEDITVHN-EDLEGDRRRLLLRGLTQS 87 (1096)
Q Consensus 9 e~~~irnkla~vlveIvkrewp~~Wp~fl~~L~~l~~~~~~~~El~L~iL~~L~EDv~~~~-edl~~~Rr~~ll~~L~~~ 87 (1096)
.+++++||++.+++.|+|++||+.||+|+++|+++++.++.+++++|.||+.|+|||+.+. ++++..||+.++++|+.+
T Consensus 112 ~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~~~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~ 191 (1023)
T 4hat_C 112 TQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSSSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKE 191 (1023)
T ss_dssp HCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999999999999999999999999998754 458899999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHHHHHHHHHhccccCCcchhcccCcHHHHH-hhcCChhHhhHH
Q 001344 88 LPEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAKYGIIHGCG-FLLSSPDFRLHA 166 (1096)
Q Consensus 88 ~p~I~~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~~~~ll~~L~-~ll~~~~~R~~A 166 (1096)
+|.|+++|+++++.. ....++.++|+|+++|++|+|+++++++++++.++ .+++++++|..|
T Consensus 192 ~~~I~~ll~~iL~~~-----------------~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~~~~~r~~A 254 (1023)
T 4hat_C 192 FEQIFKLCFQVLEQG-----------------ASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMTSPDTRAIT 254 (1023)
T ss_dssp HHHHHHHHHHHHHHC-----------------SSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHHSHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-----------------CCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcCCHHHHHHH
Confidence 999999999998751 22347899999999999999999999999999998 899999999999
Q ss_pred HHHHHHHcCCCCCCCCChHHHHHHHHHHHHHHHHHH-HHHhhhcC-CCC--CCCChhhhHHHHHHHHHHHHhhhhhhccc
Q 001344 167 CEFFKLVSPRKGPADASASEFESAMHDVFQILMKVS-GEFLYRSG-TSA--GAIDESEFEFAEYICESMVSLGTSNLHCI 242 (1096)
Q Consensus 167 ~ecL~~i~sr~~~~~~~~~~f~~~l~~i~~~~~~~~-~~~~~~~~-~~~--~~~dE~~y~f~k~l~e~L~~lg~~~~~~~ 242 (1096)
++||++|++++.+.+. ..|+..+..+|...++.. +.+++... ..+ ...++++.+|.+.+|.+++++|..+...+
T Consensus 255 ~ecL~eIv~~~~~~~~--~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li 332 (1023)
T 4hat_C 255 LKCLTEVSNLKIPQDN--DLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALL 332 (1023)
T ss_dssp HHHHHHHHTSCCCSSC--HHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHccccCCch--HHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999997742111 246666666766655544 33322110 000 01244567899999999999999999988
Q ss_pred cccc---ccHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhhhccccccCCCCCcccCCCCCCCCcchhhhhhhhcc
Q 001344 243 ARED---TILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFL 319 (1096)
Q Consensus 243 ~~~~---~~l~~~L~~lL~~t~hpsl~vs~~~l~~W~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (1096)
+.++ +.+...++.++.++.|++.+++..|++||..+.+..+.++. . ..+
T Consensus 333 ~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~-----------------------~-----~~~ 384 (1023)
T 4hat_C 333 ESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPL-----------------------K-----KHI 384 (1023)
T ss_dssp TSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTT-----------------------T-----GGG
T ss_pred hCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchH-----------------------H-----HHH
Confidence 7542 23444567999999999999999999999999987553310 0 113
Q ss_pred hhhhHHHHHHHHHHHhhcccCCC--CCCCCccccccccCCh----hhHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Q 001344 320 NDDISGAILDISFQRLVKREKAP--GTQGPLELWSDDFEGK----GDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMA 393 (1096)
Q Consensus 320 ~~~il~~Ll~~~~~rm~~~e~~~--~~~~~~e~~~~Dfd~~----~ef~~~Rk~~~~ilr~i~~~~P~~~~~~l~~~l~~ 393 (1096)
+.+++.+|+.++++||.||+++. +++. ++..+ +|..+ +.|.++| +++.+++++.+.++++.+.+.+.+
T Consensus 385 ~~~~~~~L~~vli~km~~P~e~~ive~d~-~~~~~-e~~~d~d~~~~f~~~R----d~L~~l~~l~~~~~~~~~~~~l~~ 458 (1023)
T 4hat_C 385 YEEICSQLRLVIIENMVRPEEVLVVENDE-GEIVR-EFVKESDTIQLYKSER----EVLVYLTHLNVIDTEEIMISKLAR 458 (1023)
T ss_dssp GHHHHHHHHHHHHHSCCCCTTCCEEECTT-SCEEE-CSSCCGGGHHHHHHHH----HHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCcccccCCCCC-ccHHH-HhccchHHHHHHHHHH----HHHHHHhccCHHHHHHHHHHHHHH
Confidence 45899999999999999998652 1111 23222 33222 3355555 999999999999999999999988
Q ss_pred HHhhcccCCCChhhHHHHHhHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHhcCCCCc--hHHHHHHHH
Q 001344 394 IINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEP--PLVVALGHY 471 (1096)
Q Consensus 394 ~l~~~~~~~~~s~~~~~~ea~~~~leav~~g~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll~~~~~dP--~l~s~~~~~ 471 (1096)
.+.+. ..+|...||....++||..|+.. +.+ .+.+..++..|++.+-..+++|| .+++.+||+
T Consensus 459 ~l~~~------~~~W~~~EA~~~a~gaIa~~~~~--------~~e-~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~ 523 (1023)
T 4hat_C 459 QIDGS------EWSWHNINTLSWAIGSISGTMSE--------DTE-KRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYV 523 (1023)
T ss_dssp HHSST------TCCHHHHHHHHHHHHHTTTSSCH--------HHH-HHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHH
T ss_pred HhcCC------CCCHHHHHHHHHHHHHHHcCCCc--------hhH-HHHHHHHHHHHHHhhhccccCcchHHHHHHHHHH
Confidence 77542 23488888888888887654332 112 35667777777776665566555 466889999
Q ss_pred HHhhhhhhhcCCCchhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHHHHHHhcccch--------hhHHHHHHH
Q 001344 472 LDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSI--------LPHMKDIAD 543 (1096)
Q Consensus 472 l~~l~~fl~~~~~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl~~~~~~~l--------~P~l~~i~~ 543 (1096)
+++|++|++.||+++++|++++|++|.. .++.|+.+||.+|.+||+++...+ .||+++|++
T Consensus 524 lGry~~wl~~~~~~L~~vl~~L~~~l~~-----------~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~ 592 (1023)
T 4hat_C 524 VGQYPRFLKAHWNFLRTVILKLFEFMHE-----------THEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIR 592 (1023)
T ss_dssp HHTCHHHHHHCHHHHHHHHHHHHHHTTC-----------SCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhc-----------CCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHH
Confidence 9999999999999999999999999841 234799999999999999987666 589999988
Q ss_pred HHHHHHHcccccHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHhHHHHhhhchH
Q 001344 544 TMAYLQREGRLLRGEHNLLGEAFLVMASAAGI-QQQQEVLAWLLEPLSQQWMQL 596 (1096)
Q Consensus 544 ~i~~l~~~~~L~~~e~~~L~Eal~~i~~~~~~-~~q~~~l~~ll~P~~~~W~~~ 596 (1096)
.+.+... ++...++..+|||++.+++..+. +.+.++++.||+|+.+.|.+-
T Consensus 593 ~l~~~~~--~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l 644 (1023)
T 4hat_C 593 DIQKTTA--DLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTI 644 (1023)
T ss_dssp THHHHHT--TSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHH--hCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHH
Confidence 8887775 58899999999999999986554 569999999999999999753
No 5
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=100.00 E-value=6.1e-41 Score=439.57 Aligned_cols=511 Identities=15% Similarity=0.228 Sum_probs=387.3
Q ss_pred hhHHHHHHHHHHHHHHHhhcccchhhHHHHHHHhhcCChhHHHHHHHHHHhhhhhhccccc-CchHHHHHHHHHHHHhhH
Q 001344 10 EWALKSQTAALVAEIVRREGINLWQELFPSLVSLSSKGPIQAELVSMMLRWLPEDITVHNE-DLEGDRRRLLLRGLTQSL 88 (1096)
Q Consensus 10 ~~~irnkla~vlveIvkrewp~~Wp~fl~~L~~l~~~~~~~~El~L~iL~~L~EDv~~~~e-dl~~~Rr~~ll~~L~~~~ 88 (1096)
+.+||+|++.++++|++++||+.||+++++|+++++.++.++|+++.+|+.|+||++.+.. +++..|+++++..++..+
T Consensus 113 ~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~ 192 (1049)
T 3m1i_C 113 QKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSSSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEF 192 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHH
Confidence 3799999999999999999999999999999999987888899999999999999997533 477889999999999899
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHHHHHHHHHhccccCCcchhcccCcHHHHH-hhcCChhHhhHHH
Q 001344 89 PEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAKYGIIHGCG-FLLSSPDFRLHAC 167 (1096)
Q Consensus 89 p~I~~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~~~~ll~~L~-~ll~~~~~R~~A~ 167 (1096)
|.||.++.+.+++. ....++.++|+|+..|++|+|++.++++++++.++ .+++++++|..|+
T Consensus 193 ~~i~~~~~~~l~~~-----------------~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l~~~~~~~~a~ 255 (1049)
T 3m1i_C 193 EQIFKLCFQVLEQG-----------------SSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMTSPDTRAITL 255 (1049)
T ss_dssp HHHHHHHHHHHHHC-----------------CCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHHSHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-----------------CCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhCCCHhHHHHHH
Confidence 99999999998741 11348889999999999999999999988999986 6778999999999
Q ss_pred HHHHHHcCCCCCCCCChHHHHHHHHHHHHHHHHHHHH-HhhhcC-C--CCCCCChhhhHHHHHHHHHHHHhhhhhhcccc
Q 001344 168 EFFKLVSPRKGPADASASEFESAMHDVFQILMKVSGE-FLYRSG-T--SAGAIDESEFEFAEYICESMVSLGTSNLHCIA 243 (1096)
Q Consensus 168 ecL~~i~sr~~~~~~~~~~f~~~l~~i~~~~~~~~~~-~~~~~~-~--~~~~~dE~~y~f~k~l~e~L~~lg~~~~~~~~ 243 (1096)
+||++|+++++++ ....|+..+..+|..+++..++ +++... . .-...++.+.+|.+.+|++++.++..+...++
T Consensus 256 ~~L~~i~~~~~~~--~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~ 333 (1049)
T 3m1i_C 256 KCLTEVSNLKIPQ--DNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLE 333 (1049)
T ss_dssp HHHHHHHHCCCCT--TCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCc--chhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999997543 2112333344444444443332 211100 0 00001334567999999999999988887765
Q ss_pred cc---cccHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhhhccccccCCCCCcccCCCCCCCCcchhhhhhhhcch
Q 001344 244 RE---DTILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLN 320 (1096)
Q Consensus 244 ~~---~~~l~~~L~~lL~~t~hpsl~vs~~~l~~W~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1096)
.. .+.+..++++++.++.|++.+++..+++||..+.+..+..+. .....
T Consensus 334 ~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~----------------------------~~~~~ 385 (1049)
T 3m1i_C 334 SDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPL----------------------------KKHIY 385 (1049)
T ss_dssp SCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTT----------------------------CGGGG
T ss_pred CChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchh----------------------------HHHHH
Confidence 42 235677899999999999999999999999999986321100 00112
Q ss_pred hhhHHHHHHHHHHHhhcccCCCC-CCCCccccccccCChhhHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHhhcc
Q 001344 321 DDISGAILDISFQRLVKREKAPG-TQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLL 399 (1096)
Q Consensus 321 ~~il~~Ll~~~~~rm~~~e~~~~-~~~~~e~~~~Dfd~~~ef~~~Rk~~~~ilr~i~~~~P~~~~~~l~~~l~~~l~~~~ 399 (1096)
.+++++|+.+++.||.++++... .+..+++.+ +|++|+|.+++|+.++++++.++.+.|..+++++.+.+.+.+.+.
T Consensus 386 ~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r-~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~- 463 (1049)
T 3m1i_C 386 EEICSQLRLVIIENMVRPEEVLVVENDEGEIVR-EFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGS- 463 (1049)
T ss_dssp HHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEE-CSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSS-
T ss_pred HHHHHHHHHHHHHhcCCCcceeeeeCCCCcchH-hhhccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCC-
Confidence 47899999999999998765320 001123333 344455567899999999999999999999999999998887532
Q ss_pred cCCCChhhHHHHHhHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHhcC--CCCchHHHHHHHHHHhhhh
Q 001344 400 ISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLK--WTEPPLVVALGHYLDALGP 477 (1096)
Q Consensus 400 ~~~~~s~~~~~~ea~~~~leav~~g~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll~~~--~~dP~l~s~~~~~l~~l~~ 477 (1096)
...|...|++...++++..++.. ..+ ...+..++..+++.+.... ..+|.+++..||++++|++
T Consensus 464 -----~~~W~~~eaal~algsia~~~~~--------~~e-~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~ 529 (1049)
T 3m1i_C 464 -----EWSWHNINTLSWAIGSISGTMSE--------DTE-KRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPR 529 (1049)
T ss_dssp -----SCCHHHHHHHHHHHHHTTTSSCH--------HHH-HHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHH
T ss_pred -----CCCHHHHHHHHHHHHHHhcccCc--------hhh-HHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHH
Confidence 12377788877777666433211 111 1223333333333222121 3466777789999999999
Q ss_pred hhhcCCCchhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHHHHHHhcccchh--------hHHHHHHHHHHHHH
Q 001344 478 FLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSIL--------PHMKDIADTMAYLQ 549 (1096)
Q Consensus 478 fl~~~~~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl~~~~~~~l~--------P~l~~i~~~i~~l~ 549 (1096)
|++.+|+++++|++++++.|.. .++.||.+||++|.++|+.+++.+. ||++.|++.+..++
T Consensus 530 ~~~~~~~~l~~vl~~ll~~l~~-----------~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~ 598 (1049)
T 3m1i_C 530 FLKAHWNFLRTVILKLFEFMHE-----------THEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTT 598 (1049)
T ss_dssp HHHHCHHHHHHHHHHHHHHTTS-----------SCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHhcC-----------CCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHH
Confidence 9999999999999999998741 2458999999999999999888776 99999999988877
Q ss_pred HcccccHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHhHHHHhhhchH
Q 001344 550 REGRLLRGEHNLLGEAFLVMASAAG-IQQQQEVLAWLLEPLSQQWMQL 596 (1096)
Q Consensus 550 ~~~~L~~~e~~~L~Eal~~i~~~~~-~~~q~~~l~~ll~P~~~~W~~~ 596 (1096)
.+ +...+...+|||++.+++..+ .+.+..+++.+|+|+.++|.+-
T Consensus 599 ~~--~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~ 644 (1049)
T 3m1i_C 599 AD--LQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTI 644 (1049)
T ss_dssp TT--SCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHH
T ss_pred Hh--CCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 64 888899999999999988555 5789999999999999999754
No 6
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=100.00 E-value=3.2e-39 Score=420.61 Aligned_cols=812 Identities=13% Similarity=0.135 Sum_probs=510.8
Q ss_pred hhhHHHHHHHHHHHHHHHhhcccchhhHHHHHHHhhcC------ChhHHHHHHHHHHhhhhhhcccccCchHHHHHHHHH
Q 001344 9 EEWALKSQTAALVAEIVRREGINLWQELFPSLVSLSSK------GPIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLR 82 (1096)
Q Consensus 9 e~~~irnkla~vlveIvkrewp~~Wp~fl~~L~~l~~~------~~~~~El~L~iL~~L~EDv~~~~edl~~~Rr~~ll~ 82 (1096)
.+.+||+|++.++++|++++||+.||+++++|+++++. ++.++++++.+|+.|+||++.+ +. +..||+.+.+
T Consensus 115 ~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~-~~-~~~~r~~~~~ 192 (963)
T 2x19_B 115 GSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTS-RL-PQYRKGLVRT 192 (963)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTC-CC----------C
T ss_pred CCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcc-cC-cHHHHHHHHH
Confidence 36899999999999999999999999999999998875 6779999999999999999873 33 6678888888
Q ss_pred HHHhhHhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHHHHHHHHHhccccCCcchhcc--cCcHHHHHhhcCCh
Q 001344 83 GLTQSLPEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAK--YGIIHGCGFLLSSP 160 (1096)
Q Consensus 83 ~L~~~~p~I~~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~~--~~ll~~L~~ll~~~ 160 (1096)
.+...+|.|++++.+++++. ++ ...++..+|+|+. .|++++.... ..+++.++..++++
T Consensus 193 ~l~~~~~~i~~ll~~~l~~~-----------~~-----~~~~~~~~l~~l~---~wi~~~~~~~~~~~ll~~l~~~l~~~ 253 (963)
T 2x19_B 193 SLAVECGAVFPLLEQLLQQP-----------SS-----PSCVRQKVLKCFS---SWVQLEVPLQDCEALIQAAFAALQDS 253 (963)
T ss_dssp CSGGGHHHHHHHHHHHHSCT-----------TC-----CHHHHHHHHHHHH---HHHTSSCCGGGTHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHHhCC-----------CC-----chHHHHHHHHHHH---HHHcCCCCcccchHHHHHHHHHhCCc
Confidence 88888999999988887531 01 0137788888864 5666555443 55888887667889
Q ss_pred hHhhHHHHHHHHHcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhhc
Q 001344 161 DFRLHACEFFKLVSPRKGPADASASEFESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLH 240 (1096)
Q Consensus 161 ~~R~~A~ecL~~i~sr~~~~~~~~~~f~~~l~~i~~~~~~~~~~~~~~~~~~~~~~dE~~y~f~k~l~e~L~~lg~~~~~ 240 (1096)
++|..|++||.++++++.++ ...+.+..++..++.. ...+.... .+.+.++.+.+|++++.++..+..
T Consensus 254 ~~~~~a~~~l~~i~~~~~~~-~~~~~~~~l~~~~~~~----~~~~~~~~-------~~~d~~~~~~~~~l~~~~~~~~~~ 321 (963)
T 2x19_B 254 ELFDSSVEAIVNAISQPDAQ-RYVNTLLKLIPLVLGL----QEQLRQAV-------QNGDMETSHGICRIAVALGENHSR 321 (963)
T ss_dssp TTHHHHHHHHHHHHTCTTGG-GCHHHHHHHHHHHHTT----HHHHHHHH-------HTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccccc-cCHHHHHHHHHHHHhh----HHHHHHHH-------HCCCHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999986433 2233444444433322 11111100 112347899999999999988776
Q ss_pred cccc---ccccHHHHHHHHHHhhccc-----hhHHHHHHHHHHHHHHHHhhhhccccccCCCCCcccCCCCCCCCcchhh
Q 001344 241 CIAR---EDTILSMYLQQMLGYFQHF-----KIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNADSGSGKVDSRK 312 (1096)
Q Consensus 241 ~~~~---~~~~l~~~L~~lL~~t~hp-----sl~vs~~~l~~W~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (1096)
.+.. ..+.+..++++++.++.|| +..++..+++||..+.+......+ +..+
T Consensus 322 ~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~---------------------~~~~ 380 (963)
T 2x19_B 322 ALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEA---------------------EKQA 380 (963)
T ss_dssp HHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCH---------------------HHHH
T ss_pred HHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhh---------------------hhhH
Confidence 5542 2346778999999999984 577899999999999985321100 0000
Q ss_pred hhhhhcchhhhHHHHHHHHHHHhhcccCCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHHccCchHHHHHHHHHHH
Q 001344 313 MRILSFLNDDISGAILDISFQRLVKREKAPGTQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVM 392 (1096)
Q Consensus 313 ~~~~~~~~~~il~~Ll~~~~~rm~~~e~~~~~~~~~e~~~~Dfd~~~ef~~~Rk~~~~ilr~i~~~~P~~~~~~l~~~l~ 392 (1096)
. ......+++++|+.+++.+|.++++. ++.+.|.|+.++|.+||+.+.++++.++.+.+..+++.+.+.+.
T Consensus 381 ~--~~~~~~~~l~~l~~~ll~~~~~p~~~-------~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~ 451 (963)
T 2x19_B 381 V--YQQVYRPVYFQLVDVLLHKAQFPSDE-------EYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLG 451 (963)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHSCCCHH-------HHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHHHHHHHHcCCCcc-------cccCCChhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 0 01122478889999999999875431 11112223345689999999999999999999999999999998
Q ss_pred HHHhhcccCCCChhhHHHHHhHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 001344 393 AIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYL 472 (1096)
Q Consensus 393 ~~l~~~~~~~~~s~~~~~~ea~~~~leav~~g~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll~~~~~dP~l~s~~~~~l 472 (1096)
..+... -++..|...|++...++++..++.... + +. +..+++.+..+...+|.++...++++
T Consensus 452 ~~l~~~----~~~~~w~~~eaal~al~~i~~~~~~~~------~----~~----l~~l~~~l~~l~~~~~~vr~~~~~~l 513 (963)
T 2x19_B 452 RLLTSS----EEPYSWQHTEALLYGFQSIAETIDVNY------S----DV----VPGLIGLIPRISISNVQLADTVMFTI 513 (963)
T ss_dssp HHHHTC----CCSCCHHHHHHHHHHHHHHTTSCCSSC------C----SH----HHHHHHHGGGSCCCSHHHHHHHHHHH
T ss_pred HHHHhc----CCCCchHHHHHHHHHHHHHHhhcCchh------h----HH----HHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 887432 112358899999999999888765421 0 11 33444445555556899999999999
Q ss_pred HhhhhhhhcCCCchhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHcc
Q 001344 473 DALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREG 552 (1096)
Q Consensus 473 ~~l~~fl~~~~~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl~~~~~~~l~P~l~~i~~~i~~l~~~~ 552 (1096)
++|+.|+..++++++++++++|+.|. + +.||.+||++|.++|+.++..+.||+++|++.+..++.++
T Consensus 514 ~~~~~~l~~~~~~l~~vl~~l~~~l~-------~------~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~ 580 (963)
T 2x19_B 514 GALSEWLADHPVMINSVLPLVLHALG-------N------PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQ 580 (963)
T ss_dssp HHTHHHHHHCHHHHTTTHHHHHHHTT-------C------GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHhC-------C------chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccC
Confidence 99999999999999999999998874 1 2588999999999999999999999999999999988877
Q ss_pred cccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhHHHHhhhchHhHhhhhcCChHHHHHhccCCccchhhHhHHHHHHHH
Q 001344 553 RLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQWMQLEWQNNYLSEPLGLVRLCSDTSFMWSLFHTVTFFERA 632 (1096)
Q Consensus 553 ~L~~~e~~~L~Eal~~i~~~~~~~~q~~~l~~ll~P~~~~W~~~~~~~~~l~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 632 (1096)
.+...++..+||+++.+++..+.+.+..++..+|+|+.+.|.+-. ++ . .++ ..+-...+.+..+..+
T Consensus 581 ~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~-~~-~-~~~----------~~~~~~~~~l~~l~~i 647 (963)
T 2x19_B 581 IHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLA-EE-I-PNP----------SNKLAIVHILGLLSNL 647 (963)
T ss_dssp CSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHH-SS-C-SCH----------HHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH-hC-C-CCH----------HHHHHHHHHHHHHHHH
Confidence 788999999999999999866677889999999999999996431 11 1 111 1122233334444444
Q ss_pred HhhhccccccccccCC---CCCCcccccchhhhhhhhhhhHHHHHHHHHhccCccccccCchHHHHHcccCHHHHhhhcC
Q 001344 633 LKRSGIRKANLNLQSS---SAENSAVMHPMASHLSWMLPPLLKLLRAIHSIWSPSISQLLPGEIKAAMTMSDAEQFSLLG 709 (1096)
Q Consensus 633 lkr~~~~~~~~~s~~~---~~~~~~~~~p~~~~~~~iLp~ll~Llr~~h~l~~P~~~~~l~~~~~~~~~~~~~Er~~~lg 709 (1096)
.+..+........+.. ....+...+|+......++|.+++++.... .++
T Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~-------------------------- 699 (963)
T 2x19_B 648 FTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWL--NDA-------------------------- 699 (963)
T ss_dssp HHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHT--TCH--------------------------
T ss_pred HHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhcc--Cch--------------------------
Confidence 4333211110000000 001122456777777778888777776521 122
Q ss_pred CCCCCCccccccccCCCCCCCCcCCCCCCchHHHHHHHHHHHHHHHHHHHhhh-cCCcccccCCCchHHHHHHhcCCCCC
Q 001344 710 EGNPKFSRGAVAFADGSQLDTSKEGYGEPNESDIRNWLKGVRDSGYNVLGLSA-TIGDPFFKSLDSGSVVVALMENIQSM 788 (1096)
Q Consensus 710 ~~~~~~sk~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~re~~y~ilg~~~-~l~~~Fy~~~~l~~l~~al~~~~~~l 788 (1096)
.++|.++.+++.+. .+|+.|-.. ++++...+..+...-
T Consensus 700 ---------------------------------------~v~e~~~~~l~~~~~~~~~~~~~~--l~~~~~~l~~~~~~~ 738 (963)
T 2x19_B 700 ---------------------------------------QVVEAVCAIFEKSVKTLLDDFAPM--VPQLCEMLGRMYSTI 738 (963)
T ss_dssp ---------------------------------------HHHHHHHHHHHHHHHHSSSTTGGG--HHHHHHHHHHHHHHS
T ss_pred ---------------------------------------HHHHHHHHHHHHHHHhhccccccc--HHHHHHHHHHHHHcC
Confidence 11222222222222 222222110 111111111110000
Q ss_pred ccccHHHHHHHHHHHhhccCChhhHHHHHHHhhHHHHHHHHHHHHhhhHHhhhhccCCchhHHHHHHHHHHHHhHHHHHH
Q 001344 789 EFRHIRQLVHSVLIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSSLMHEVAGSDLKVEVMEEKLLRDLTREICSL 868 (1096)
Q Consensus 789 ~~~~lr~ll~~~~~plv~~CP~~~~~~~l~plL~~lf~~~~~rL~~~W~~i~~~~~~~~~~~E~~ee~llr~LTr~~~~l 868 (1096)
+...+=.++..+++-+ ..... ....+.+++..++..+...+.. + ..+ -.++..++..+
T Consensus 739 ~~~~~l~l~~~li~~f--~~~~~-~~~~~~~~l~~~~~~~l~~~~~--------~----~~~-------~pd~~~~~f~l 796 (963)
T 2x19_B 739 PQASALDLTRQLVHIF--AHEPA-HFPPIEALFLLVTSVTLTLFQQ--------G----PRD-------HPDIVDSFMQL 796 (963)
T ss_dssp CCHHHHHHHHHHHHHH--TTCTT-TCHHHHHHHHHHHHHHHHHHHH--------C----TTT-------CHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHh--CCCcc-hHHHHHHHHHHHHHHHHHHHhh--------C----ccc-------CchHHHHHHHH
Confidence 0000111122222211 11110 1122333444444433332221 0 000 13456667777
Q ss_pred HHHHhcCCCCCCCCCCCCCCCcccccccccccchhhhhhhhHHHHhcCcCchhHHHHHHHhhhcccchhhhHHHHHhHHH
Q 001344 869 LSTMASSGLNNGIPPIEQSGHFYRVDVLSLKDLDAFASNSMVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSA 948 (1096)
Q Consensus 869 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~i~~~~l~~~~~~l~w~Dt~~~~ka~~~~~~ 948 (1096)
+..++... ...++..+.....++.++..++.-.|...+..++.|...
T Consensus 797 l~~~~~~~---------------------------------~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~ 843 (963)
T 2x19_B 797 LAQALKRK---------------------------------PDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTE 843 (963)
T ss_dssp HHHHHHHC---------------------------------GGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHhC---------------------------------cHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 77776421 011122222367778888888886776677777777777
Q ss_pred HHHHhhcccchhhhHHH---HHHHHHHHHHHhccCchHhhHHHHHHHHHHHHHhcCCCCc-hHHHHHH--hCC--CCCHH
Q 001344 949 VVLLAIQSNNIELRQFV---SKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDP-APRQVLL--SLP--CITPQ 1020 (1096)
Q Consensus 949 l~~~~~~~~~~~l~~~~---~~~~~~a~l~~L~~~~~~~~~~~l~~L~~~iy~~l~~~~~-~~~~vL~--~lP--~i~~~ 1020 (1096)
++.... ..+.+.+|+ +..++.+++.++..........++..++..++........ -..++|. .+| +++++
T Consensus 844 l~~~~~--~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~il~~l~~~~~~~~~~~l~~~l~~~~~p~~~~~~~ 921 (963)
T 2x19_B 844 LLPRCG--EVESVGKVVQEDGRMLLIAVLEAIGGQASRSLMDCFADILFALNKHCFSLLSMWIKEALQPPGFPSARLSPE 921 (963)
T ss_dssp HGGGTT--SSCHHHHHTTTSHHHHHHHHHHHHTTTSCGGGHHHHHHHHHHHHHHSHHHHHHHHHHHTCSTTSSCTTCCHH
T ss_pred HHhcCC--ChHHHHHHHHHHHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHHHChHHHHHHHHHHhcccCCCCCcCCHH
Confidence 765432 122233332 6777788888886544444445555555666654221111 1233442 578 89999
Q ss_pred HHHHHHHHHhcCC-ChHHHHHHHHHHHHhhcCCc
Q 001344 1021 DLLAFEDALTKTA-SPREQKQHMRSLLVLGTGNN 1053 (1096)
Q Consensus 1021 ~l~~f~~~l~~~~-s~k~qr~~~k~ll~~~~g~~ 1053 (1096)
..++|-++|...+ ..|.=|+.+++|+..++|..
T Consensus 922 ~~~~f~~~l~~~~~~~~~f~~~l~~F~~~~r~~~ 955 (963)
T 2x19_B 922 QKDTFSQQILRERVNKRRVKEMVKEFTLLCRGLH 955 (963)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHcCcc
Confidence 9999999997664 77778999999999988753
No 7
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=100.00 E-value=3.3e-38 Score=411.35 Aligned_cols=817 Identities=10% Similarity=0.084 Sum_probs=513.8
Q ss_pred hhHHHHHHHHHHHHHHHhhcccchhhHHHHHHHhhcC-------ChhHHHHHHHHHHhhhhhhcccccCchHHHHHHHHH
Q 001344 10 EWALKSQTAALVAEIVRREGINLWQELFPSLVSLSSK-------GPIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLR 82 (1096)
Q Consensus 10 ~~~irnkla~vlveIvkrewp~~Wp~fl~~L~~l~~~-------~~~~~El~L~iL~~L~EDv~~~~edl~~~Rr~~ll~ 82 (1096)
+.+||+|++.++++|++++|| .||+++++|+++++. ++.++|+++.+|+.|+||++.. + +..||..+.+
T Consensus 98 ~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~-~--~~~~r~~~~~ 173 (971)
T 2x1g_F 98 PKIVLNRLCISLGAYIVHMLG-EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVI-H--TSVKRVVLRA 173 (971)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC-C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHC-C--CSSCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHccc-cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhcc-C--cHHHHHHHHH
Confidence 689999999999999999999 999999999998865 5779999999999999999863 3 4468888889
Q ss_pred HHHhhHhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHHHHHHHHHhccc--cCCcchhcccCcHHHHHhh----
Q 001344 83 GLTQSLPEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAE--WAPLPDLAKYGIIHGCGFL---- 156 (1096)
Q Consensus 83 ~L~~~~p~I~~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~--Wip~~~i~~~~ll~~L~~l---- 156 (1096)
.+...+|.|++++.+.++.... ...+ .....++.++|+|++.|+. |+|.+ .+..+++.++.+
T Consensus 174 ~l~~~~~~vl~ll~~~l~~~~~------~~~~----~~~~~~~~~al~~l~~~~~~~~ip~~--~~~~ll~~l~~L~~~~ 241 (971)
T 2x1g_F 174 EIAKRVQLVIHTVERYLKLQMN------RVWD----AEAYSNMNRAVKCVGTWIKNIGYTIE--GCVTITAVLLEVVHKC 241 (971)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTT------SCCC----HHHHHHHHHHHHHHHHHHHHSCCCGG--GHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccC------CCCC----ccchhHHHHHHHHHHHHHhhCCcCcc--ccccHHHHHHhhhhhh
Confidence 9999999999999988875310 0000 0134588999999999999 99998 555688876441
Q ss_pred c-------------CChhHhhHHHHHHHHHcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCChhhhHH
Q 001344 157 L-------------SSPDFRLHACEFFKLVSPRKGPADASASEFESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEF 223 (1096)
Q Consensus 157 l-------------~~~~~R~~A~ecL~~i~sr~~~~~~~~~~f~~~l~~i~~~~~~~~~~~~~~~~~~~~~~dE~~y~f 223 (1096)
+ +++++|..|++||.+|++++.. .+..+.++.++..+ ++....+.... ..+ |++..++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~-~~~~~~~~~l~~~~----~~~~~~~~~~~--~~~--d~~~~~~ 312 (971)
T 2x1g_F 242 YWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDC-HNYPKTAFVLIKMF----LDSLSEITKTE--WKR--ENDNEDI 312 (971)
T ss_dssp HSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGG-GGCHHHHHHHHHHH----HHHHHHHHHHH--SSS--SCSCSHH
T ss_pred ccccccccccccCcCCcHHHHHHHHHHHHHHcCccc-cccHHHHHHHHHHH----HHhHHHHHHHH--hcc--cccchHH
Confidence 1 5689999999999999998632 23333444333333 33222211110 001 1100268
Q ss_pred HHHHHHHHHHhhhhhhcccc----c----ccccHHHHHHHHHHhhcc----c-hhHHHHHHHHHHHHHHHHhhhhccccc
Q 001344 224 AEYICESMVSLGTSNLHCIA----R----EDTILSMYLQQMLGYFQH----F-KIALHFQSLLFWLALMRDLMSKTKVAH 290 (1096)
Q Consensus 224 ~k~l~e~L~~lg~~~~~~~~----~----~~~~l~~~L~~lL~~t~h----p-sl~vs~~~l~~W~~lL~~~~~~~~~~~ 290 (1096)
.+.+|++++.++..+...+. . ....+..+++.++.++.| + +..++..+++||..+.+.......
T Consensus 313 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~--- 389 (971)
T 2x1g_F 313 IVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSN--- 389 (971)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhccc---
Confidence 89999999999977665543 2 224677899999999988 3 788999999999999875321100
Q ss_pred cCCCCCcccCCCCCCCCcchhhhhhhhcchhhhHHHHHHHHHHHhhcccCCCCCCCCccccccccCChhhHHHHHHHHHH
Q 001344 291 STGDGSTVNNADSGSGKVDSRKMRILSFLNDDISGAILDISFQRLVKREKAPGTQGPLELWSDDFEGKGDFSQYRSRLLE 370 (1096)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~Ll~~~~~rm~~~e~~~~~~~~~e~~~~Dfd~~~ef~~~Rk~~~~ 370 (1096)
+........ ...+++++++..+..+|.+|++. ++.+.|.+++++|.+||+.+.+
T Consensus 390 --------------~~~~~~~~~-----~~~~~~~~ll~~l~~~~~~p~~~-------~~~~~d~~e~~~f~~~R~~~~~ 443 (971)
T 2x1g_F 390 --------------DEQKHKCWE-----YIKPLYAHLTRILVRKSEQPDEK-------SLAKWSSDDLECFRCYRQDISD 443 (971)
T ss_dssp ------------------CHHHH-----HHHHHHHHHHHHHHHHTSCCCTT-------TTSCSCHHHHHHHHHHHHHHHH
T ss_pred --------------ccchHHHHH-----HHHHHHHHHHHHHHHHhcCCCcc-------cccccCHhHHHHHHHHHHHHHH
Confidence 000000111 12367888999999999776532 1111222334678999999999
Q ss_pred HHHHHHccCchHHHHHHHHHHHHHHhhcccCCCChhhHHHHHhHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHHHH
Q 001344 371 LVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGL 450 (1096)
Q Consensus 371 ilr~i~~~~P~~~~~~l~~~l~~~l~~~~~~~~~s~~~~~~ea~~~~leav~~g~~~~~~~~~~~~~~~~~~l~~~l~~L 450 (1096)
+++.++.+.+...++.+.+.+...+.+.... +..|...|++...++++..|+..... + .+..+
T Consensus 444 ~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~---~~~w~~~eaal~~l~~iae~~~~~~~----------~----~l~~l 506 (971)
T 2x1g_F 444 TFMYCYDVLNDYILEILAAMLDEAIADLQRH---PTHWTKLEACIYSFQSVAEHFGGEEK----------R----QIPRL 506 (971)
T ss_dssp HHHHHHTTCTTHHHHHHHHHHHHHHHHHHHC---TTCCHHHHHHHHHHHHTTTC----------------C----HHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhccCC---CCcHHHHHHHHHHHHHHHhhcChhhh----------H----HHHHH
Confidence 9999999999999998888888877543111 13588999999999999887665220 1 13334
Q ss_pred HHHHHhcC--CCCchHHHHHHHHHHhhhhhhhcCCCchhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHHHHHH
Q 001344 451 LRQLLSLK--WTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAK 528 (1096)
Q Consensus 451 l~~ll~~~--~~dP~l~s~~~~~l~~l~~fl~~~~~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl~~ 528 (1096)
++.+..+. ..+|.++...++++++|+.|+..++++++++++.+++.|. | .||.+||++|.++|+
T Consensus 507 ~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~--~------------~v~~~A~~al~~l~~ 572 (971)
T 2x1g_F 507 MRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGLN--S------------SMSAQATLGLKELCR 572 (971)
T ss_dssp HHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHHH--S------------SCHHHHHHHHHHHHH
T ss_pred HHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhC--h------------HHHHHHHHHHHHHHH
Confidence 44344444 3589999999999999999999999999999999988772 1 468899999999999
Q ss_pred hcccchhhHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhHHHHhhhchHhHhhhhcCChHH
Q 001344 529 TSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQWMQLEWQNNYLSEPLG 608 (1096)
Q Consensus 529 ~~~~~l~P~l~~i~~~i~~l~~~~~L~~~e~~~L~Eal~~i~~~~~~~~q~~~l~~ll~P~~~~W~~~~~~~~~l~~~~~ 608 (1096)
.+...+.||+++|.+.+.+++.++.+...++..+||+++.+++..+.+.+..++..+++|+.+.|.+-- ++ ...+.
T Consensus 573 ~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~-~~-~~~~~-- 648 (971)
T 2x1g_F 573 DCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAIC-QA-DSKTP-- 648 (971)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHH-TC----CH--
T ss_pred HHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH-hc-CCCCh--
Confidence 999999999999999999999987889999999999999999866678889999999999999996431 11 10011
Q ss_pred HHHhccCCccchhhHhHHHHHHHHHhhhccccccccccCCCCCCcccccchhhhhhhhhhhHHHHHHHHHhccCcccccc
Q 001344 609 LVRLCSDTSFMWSLFHTVTFFERALKRSGIRKANLNLQSSSAENSAVMHPMASHLSWMLPPLLKLLRAIHSIWSPSISQL 688 (1096)
Q Consensus 609 f~~~~~~~~~~~~~~~~~~~~~~~lkr~~~~~~~~~s~~~~~~~~~~~~p~~~~~~~iLp~ll~Llr~~h~l~~P~~~~~ 688 (1096)
+.+..+.++++.+.++++--+...... . .+.. ..+|+.+.+..++|-+++++.. |. .
T Consensus 649 --------~~~~~~~~~l~~L~~~~~~l~~~~~~~--~---~~~~-~~~~~~~~~~~i~~~l~~~l~~----~~-----~ 705 (971)
T 2x1g_F 649 --------AARIRTIFRLNMISTLFSSLNTDVDEQ--A---TDQP-IVQPVLLVMQRTMPIFKRIAEM----WV-----E 705 (971)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHTC-------------------CCHHHHHTTHHHHHHHHHH----TT-----T
T ss_pred --------hhHHHHHHHHHHHHHHHhhcCCCcCcc--c---cccc-CCCchHHHHHHHHHHHHHHHHh----cc-----c
Confidence 123344445555555555432111000 0 0000 1345666666666666665542 10 0
Q ss_pred CchHHHHHcccCHHHHhhhcCCCCCCCccccccccCCCCCCCCcCCCCCCchHHHHHHHHHHHHHHHHHHHhhh-cCCcc
Q 001344 689 LPGEIKAAMTMSDAEQFSLLGEGNPKFSRGAVAFADGSQLDTSKEGYGEPNESDIRNWLKGVRDSGYNVLGLSA-TIGDP 767 (1096)
Q Consensus 689 l~~~~~~~~~~~~~Er~~~lg~~~~~~sk~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~re~~y~ilg~~~-~l~~~ 767 (1096)
. ..++|.++.++|.+. .+|.+
T Consensus 706 -~---------------------------------------------------------~~v~e~~~~~~~~~~~~~~~~ 727 (971)
T 2x1g_F 706 -E---------------------------------------------------------IDVLEAACSAMKHAITNLRSS 727 (971)
T ss_dssp -C---------------------------------------------------------HHHHHHHHHHHHHHHHHHHC-
T ss_pred -c---------------------------------------------------------HHHHHHHHHHHHHHHHhhhhh
Confidence 0 034555555555544 44444
Q ss_pred cccCCCchHHHHHHhcCCCCCccccHHHHHHHHHHHhhccCChh-hHHHHHHHhhHHHHHHHHHHHHhhhHHhhhhccCC
Q 001344 768 FFKSLDSGSVVVALMENIQSMEFRHIRQLVHSVLIHMVKFCPLD-MWEFWLEKLLNPLFIHCQQVLSSSWSSLMHEVAGS 846 (1096)
Q Consensus 768 Fy~~~~l~~l~~al~~~~~~l~~~~lr~ll~~~~~plv~~CP~~-~~~~~l~plL~~lf~~~~~rL~~~W~~i~~~~~~~ 846 (1096)
|= |-+..+...+...+.. .++ -..+.. +.-++...-.+ -....+.+++.+++.++...|....
T Consensus 728 ~~--p~l~~~~~~l~~~~~~--~~~-~~~l~l-~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~---------- 791 (971)
T 2x1g_F 728 FQ--PMLQDLCLFIVASFQT--RCC-APTLEI-SKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTP---------- 791 (971)
T ss_dssp -C--THHHHHHHHHHHHCC----CC-HHHHHH-HHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCT----------
T ss_pred cc--ccHHHHHHHHHHHHhc--CCc-hHHHHH-HHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhccc----------
Confidence 41 1133334444333332 111 122221 22233322221 1223355556666665555443211
Q ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHhcCCCCCCCCCCCCCCCcccccccccccchhhhhhhhHHHHhcCcCc-hhHHHH
Q 001344 847 DLKVEVMEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFYRVDVLSLKDLDAFASNSMVGFLLKHKDL-ALPALQ 925 (1096)
Q Consensus 847 ~~~~E~~ee~llr~LTr~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~i-~~~~l~ 925 (1096)
++ ..++ .-++.+++..|+..++... + +.++.+ .. ...++.
T Consensus 792 --~~-~~~~--~pd~~~~~f~ll~~~l~~~-----p----------------------------~~~~~s-~~~l~~i~~ 832 (971)
T 2x1g_F 792 --EQ-NFSN--ISDTMETFFGCLTQIIKKI-----P----------------------------QVLEDK-TLAYDRLVF 832 (971)
T ss_dssp --TT-HHHH--THHHHHHHHHHHHHHHHSS-----G----------------------------GGGGCT-TSCHHHHHH
T ss_pred --cc-CCcc--CchHHHHHHHHHHHHHHhC-----c----------------------------HHHcCC-cccHHHHHH
Confidence 00 1111 1356777888888776632 0 111222 34 577888
Q ss_pred HHHhhhcccchhhhHHHHHhHHHHHHHhhcccchhhhHHH---HHHHHHHHHHHhccCchHhhHHHHHHHHHHHHHhcCC
Q 001344 926 ISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFV---SKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCD 1002 (1096)
Q Consensus 926 ~~~~~l~w~Dt~~~~ka~~~~~~l~~~~~~~~~~~l~~~~---~~~~~~a~l~~L~~~~~~~~~~~l~~L~~~iy~~l~~ 1002 (1096)
++..++.-+|...++.|+.|...++.... ..+.+++++ +..+..+++.++..........++..++..++..+..
T Consensus 833 ~~~~~l~~~~~~~~~s~~~fl~~~i~~~~--~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~s~~~~~a~~l~~l~~~~~~ 910 (971)
T 2x1g_F 833 YAQRGMTLPESGAIRNSIQFLTHFVMQSR--NHAHVTEVVLATGEQTLYTAMMCVGYLTPRSQVDKFADILLAMNRKYAA 910 (971)
T ss_dssp HHHHHHTSSCSSHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGGGGGHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHhcCC--chHHHHHHHHHhHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHHHCcH
Confidence 88888887776677777777777665421 233455544 4566666666654333233344455555555543321
Q ss_pred CC-chHHHHHH--hCC--CCCHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHhhcCCc
Q 001344 1003 RD-PAPRQVLL--SLP--CITPQDLLAFEDALTKTA-SPREQKQHMRSLLVLGTGNN 1053 (1096)
Q Consensus 1003 ~~-~~~~~vL~--~lP--~i~~~~l~~f~~~l~~~~-s~k~qr~~~k~ll~~~~g~~ 1053 (1096)
.. +-..++|. .+| ++++++.++|-++|.+.+ +.|.=|+.+|++...+.|..
T Consensus 911 ~~~~~l~~~l~~~~~p~~~~~~~~~~~f~~~l~~~~~~~r~~~~~~~~f~~~~r~~~ 967 (971)
T 2x1g_F 911 EMAVWMKSLMSTPNFPTQLITDADKTRYTALIIKEKVNKRLLQQHLSEMAMKTRGLT 967 (971)
T ss_dssp HHHHHHHHHHTSSSCSCSSSCHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhcccCCCCCcCCHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHcCcc
Confidence 11 12344443 577 489999999999996554 78888999999999988764
No 8
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.84 E-value=3.9e-18 Score=218.96 Aligned_cols=429 Identities=16% Similarity=0.206 Sum_probs=284.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhcccchhhHHHHHHHhhcC-ChhHHHHHHHHHHhhhhhhcccccCchHHHHHHHHHHHHhh
Q 001344 9 EEWALKSQTAALVAEIVRREGINLWQELFPSLVSLSSK-GPIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGLTQS 87 (1096)
Q Consensus 9 e~~~irnkla~vlveIvkrewp~~Wp~fl~~L~~l~~~-~~~~~El~L~iL~~L~EDv~~~~edl~~~Rr~~ll~~L~~~ 87 (1096)
++..+|++++.+++.|++++||..||++++.|++..+. ++..++.++.+|..++|+.....+. +.+...
T Consensus 102 ~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~----------~~~~~~ 171 (852)
T 4fdd_A 102 SSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDS----------DVLDRP 171 (852)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHH----------CSSSSC
T ss_pred CCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhch----------hhhcch
Confidence 34589999999999999999999999999999998854 5788999999999999887531100 000000
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHHHHHHHHHhccccCCcchhcccCcHHHHHhhcCChhHhhHHH
Q 001344 88 LPEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAKYGIIHGCGFLLSSPDFRLHAC 167 (1096)
Q Consensus 88 ~p~I~~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~~~~ll~~L~~ll~~~~~R~~A~ 167 (1096)
++.+++.+.+. +--+++.+|..|+
T Consensus 172 ~~~il~~l~~~--------------------------------------------------------l~~~~~~vR~~A~ 195 (852)
T 4fdd_A 172 LNIMIPKFLQF--------------------------------------------------------FKHSSPKIRSHAV 195 (852)
T ss_dssp HHHHHHHHTTT--------------------------------------------------------TTCSSHHHHHHHH
T ss_pred HHHHHHHHHHH--------------------------------------------------------hcCCCHHHHHHHH
Confidence 11111111100 1123577888888
Q ss_pred HHHHHHcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhhcccccccc
Q 001344 168 EFFKLVSPRKGPADASASEFESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIAREDT 247 (1096)
Q Consensus 168 ecL~~i~sr~~~~~~~~~~f~~~l~~i~~~~~~~~~~~~~~~~~~~~~~dE~~y~f~k~l~e~L~~lg~~~~~~~~~~~~ 247 (1096)
.||..++... +....+.++.++..++.. +. + .+....+..++.+..+.......+. +
T Consensus 196 ~aL~~~~~~~--~~~~~~~~~~~l~~l~~~----~~--------d------~~~~vr~~a~~~L~~l~~~~~~~~~---~ 252 (852)
T 4fdd_A 196 ACVNQFIISR--TQALMLHIDSFIENLFAL----AG--------D------EEPEVRKNVCRALVMLLEVRMDRLL---P 252 (852)
T ss_dssp HHHHTTTTTT--CHHHHTSHHHHHHHHHHH----HT--------C------CCHHHHHHHHHHHHHHHHHCHHHHG---G
T ss_pred HHHHHHHhcc--cHHHHHHHHHHHHHHHHH----cC--------C------CCHHHHHHHHHHHHHHHHhCHHHHH---H
Confidence 8887776433 111111223333333322 21 1 1334667777777777654443332 3
Q ss_pred cHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhhhccccccCCCCCcccCCCCCCCCcchhhhhhhhcchhhhHHHH
Q 001344 248 ILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLNDDISGAI 327 (1096)
Q Consensus 248 ~l~~~L~~lL~~t~hpsl~vs~~~l~~W~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~L 327 (1096)
.+..+++.++..+++++..+...+++||..+.++...+ +.. ..+++.+
T Consensus 253 ~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~---------------------------~~~-----~~~~~~l 300 (852)
T 4fdd_A 253 HMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICK---------------------------DVL-----VRHLPKL 300 (852)
T ss_dssp GHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHH---------------------------HHH-----TTTHHHH
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHH---------------------------HHH-----HHHHHHH
Confidence 56788999999999999999999999999876541101 001 1345566
Q ss_pred HHHHHHHhhcccCCCCCCCCccccccccCChh-hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHhhcccCCCChh
Q 001344 328 LDISFQRLVKREKAPGTQGPLELWSDDFEGKG-DFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQ 406 (1096)
Q Consensus 328 l~~~~~rm~~~e~~~~~~~~~e~~~~Dfd~~~-ef~~~Rk~~~~ilr~i~~~~P~~~~~~l~~~l~~~l~~~~~~~~~s~ 406 (1096)
+..+...|.+.++...-.. .+..++|+|+++ +.++.|+.....+..++...|....+.+...+...+.+.
T Consensus 301 ~p~ll~~l~~~e~d~~~~~-~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~-------- 371 (852)
T 4fdd_A 301 IPVLVNGMKYSDIDIILLK-GDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHH-------- 371 (852)
T ss_dssp HHHHHHHTSCCHHHHHHHH-C------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCS--------
T ss_pred HHHHHHHcCCcHhHHHHhc-CCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC--------
Confidence 6666777765432100000 000011111111 237889999999999999888888887778777776542
Q ss_pred hHHHHHhHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHHHHHHHHH-hcCCCCchHHHHHHHHHHhhhhhhhc--CC
Q 001344 407 DLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLL-SLKWTEPPLVVALGHYLDALGPFLKY--YP 483 (1096)
Q Consensus 407 ~~~~~ea~~~~leav~~g~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll-~~~~~dP~l~s~~~~~l~~l~~fl~~--~~ 483 (1096)
.|...++....++++.+++.+.. .+.+.+++..++ .++.++|.+|...+++++.++.++.. ..
T Consensus 372 ~~~~R~aa~~alg~i~~~~~~~~--------------~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~ 437 (852)
T 4fdd_A 372 EWVVKESGILVLGAIAEGCMQGM--------------IPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPD 437 (852)
T ss_dssp SHHHHHHHHHHHHHTTTTTHHHH--------------GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTT
T ss_pred CHHHHHHHHHHHHHHHhcchHHH--------------HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHH
Confidence 47778888888888877654311 111233333333 23788999999999999999998754 45
Q ss_pred CchhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHcccccHHHHHHHH
Q 001344 484 DAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLG 563 (1096)
Q Consensus 484 ~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl~~~~~~~l~P~l~~i~~~i~~l~~~~~L~~~e~~~L~ 563 (1096)
.++..++..+++.+. + ....||.+||.+|..+++..+..+.||++.++..+..++.. ...+....++
T Consensus 438 ~~~~~ll~~L~~~L~-------d----~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~--~~~~~~~~~~ 504 (852)
T 4fdd_A 438 TYLKPLMTELLKRIL-------D----SNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSK--YQHKNLLILY 504 (852)
T ss_dssp TTHHHHHHHHHHHHT-------C----SSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH--CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-------C----CCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHH--hChHHHHHHH
Confidence 788889998888773 1 23489999999999999999889999999998888877764 4566777899
Q ss_pred HHHHHHhcCCCHH-HHHHHHHHHhHHHHhhhc
Q 001344 564 EAFLVMASAAGIQ-QQQEVLAWLLEPLSQQWM 594 (1096)
Q Consensus 564 Eal~~i~~~~~~~-~q~~~l~~ll~P~~~~W~ 594 (1096)
++++.++...+.. .+.+++..+|+++.+.|.
T Consensus 505 ~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~ 536 (852)
T 4fdd_A 505 DAIGTLADSVGHHLNKPEYIQMLMPPLIQKWN 536 (852)
T ss_dssp HHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhccHHHHHHHHHHHHHHHH
Confidence 9999998643332 357799999999999884
No 9
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.76 E-value=8.7e-16 Score=199.52 Aligned_cols=477 Identities=13% Similarity=0.094 Sum_probs=270.3
Q ss_pred hhHHHHHHHHHHHHHHHhhcccchhhHHHHHHHhhc-CChhHHHHHHHHHHhhhhhhcccccCchHHHHHHHHHHHHhhH
Q 001344 10 EWALKSQTAALVAEIVRREGINLWQELFPSLVSLSS-KGPIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGLTQSL 88 (1096)
Q Consensus 10 ~~~irnkla~vlveIvkrewp~~Wp~fl~~L~~l~~-~~~~~~El~L~iL~~L~EDv~~~~edl~~~Rr~~ll~~L~~~~ 88 (1096)
+..||++++.+++.|++++||.+||+++++|+++.+ .++...+.+|.+|..++++.-.... ...-+.++...+...+
T Consensus 98 ~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~--~~~~~~~l~~~l~~~~ 175 (960)
T 1wa5_C 98 PNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFR--SDELFLEIKLVLDVFT 175 (960)
T ss_dssp CHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCC--CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhc--ChHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999874 4567889999999999986532111 1122335555566667
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHHHHHHHHHhccccCCcchhcccCcHHHHHhhcCChhHhhHHHH
Q 001344 89 PEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAKYGIIHGCGFLLSSPDFRLHACE 168 (1096)
Q Consensus 89 p~I~~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~~~~ll~~L~~ll~~~~~R~~A~e 168 (1096)
|.+++++..+.+. .... .++..........+..+++++.. +.|..........+-..+ .
T Consensus 176 ~~ll~~~~~~~~~-----l~~~-~~~~~~~~~~~~~~~~~~k~~~~-l~~~~~~~~~~~~~~~~~--------------~ 234 (960)
T 1wa5_C 176 APFLNLLKTVDEQ-----ITAN-ENNKASLNILFDVLLVLIKLYYD-FNCQDIPEFFEDNIQVGM--------------G 234 (960)
T ss_dssp HHHHHHHHHHHHH-----TTCC-C--CHHHHHHHHHHHHHHHHHHH-HHSSCCCHHHHHTHHHHH--------------H
T ss_pred HHHHHHHHHHHHH-----HHhc-CCCHHHHHHHHHHHHHHHHHHHH-HhhccchHHHHHHHHHHH--------------H
Confidence 7666655543221 0000 00111122334456667777644 455555444332221111 1
Q ss_pred HHHHHcCCCCCC-----CCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhhcccc
Q 001344 169 FFKLVSPRKGPA-----DASASEFESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIA 243 (1096)
Q Consensus 169 cL~~i~sr~~~~-----~~~~~~f~~~l~~i~~~~~~~~~~~~~~~~~~~~~~dE~~y~f~k~l~e~L~~lg~~~~~~~~ 243 (1096)
.+..++....+. ++.... ......+.+|+.++.+...+...+.
T Consensus 235 ~~~~~l~~~~p~~~~d~d~~~~~--------------------------------~~~~vk~~~~~~l~~l~~~~~~~f~ 282 (960)
T 1wa5_C 235 IFHKYLSYSNPLLEDPDETEHAS--------------------------------VLIKVKSSIQELVQLYTTRYEDVFG 282 (960)
T ss_dssp HHHHHHSCCSCCCC------CCC--------------------------------HHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHcCCCCcccCCccccccc--------------------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222221110 000000 0011222333333333222211110
Q ss_pred cccccHHHHHHHHHHhhc-----cchhHHHHHHHHHHHHHHHHh-hhhccccccCCCCCcccCCCCCCCCcchhhhhhhh
Q 001344 244 REDTILSMYLQQMLGYFQ-----HFKIALHFQSLLFWLALMRDL-MSKTKVAHSTGDGSTVNNADSGSGKVDSRKMRILS 317 (1096)
Q Consensus 244 ~~~~~l~~~L~~lL~~t~-----hpsl~vs~~~l~~W~~lL~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (1096)
+.+..+++.++.+.. ..+..+...+++||.++.+.. ..+.
T Consensus 283 ---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~------------------------------- 328 (960)
T 1wa5_C 283 ---PMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEI------------------------------- 328 (960)
T ss_dssp ---HHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGG-------------------------------
T ss_pred ---HHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHH-------------------------------
Confidence 123334444444332 234567888999999887641 1110
Q ss_pred cchhhhHHHHH-HHHHHHhhcccCCCCCC--CCccccccccCChhhHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHH
Q 001344 318 FLNDDISGAIL-DISFQRLVKREKAPGTQ--GPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAI 394 (1096)
Q Consensus 318 ~~~~~il~~Ll-~~~~~rm~~~e~~~~~~--~~~e~~~~Dfd~~~ef~~~Rk~~~~ilr~i~~~~P~~~~~~l~~~l~~~ 394 (1096)
+-.++++++++ .++...|...++..+.. ...+|.++|.| ++++++.|+...++++.++...+....+.+.+.+...
T Consensus 329 ~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e-~~d~~s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~ 407 (960)
T 1wa5_C 329 FNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLE-GSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGF 407 (960)
T ss_dssp GCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHH-C----CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccC-cccccCcHHHHHHHHHHHHHHcchhHHHHHHHHHHHH
Confidence 00126778888 57788887654422110 00122222333 3456799999999999999999988887777777776
Q ss_pred HhhcccCCCChhhHHHHHhHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHHH-HHHHHHhcCCCCchHHHHHHHHHH
Q 001344 395 INSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEG-LLRQLLSLKWTEPPLVVALGHYLD 473 (1096)
Q Consensus 395 l~~~~~~~~~s~~~~~~ea~~~~leav~~g~~~~~~~~~~~~~~~~~~l~~~l~~-Ll~~ll~~~~~dP~l~s~~~~~l~ 473 (1096)
+...... .++.|...||+..+++++..+......+...... ...+.+.+.. ++..+-.-+..+|.+|...||+++
T Consensus 408 l~~~~~~--~~~~w~~reaal~algaia~~~~~~~~~~~~~~~--~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg 483 (960)
T 1wa5_C 408 VDQYMSD--PSKNWKFKDLYIYLFTALAINGNITNAGVSSTNN--LLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIY 483 (960)
T ss_dssp HHHHHC------CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCT--TCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHH
T ss_pred HHHhccC--cchhHHHHHHHHHHHHHHHHHhccccCCcccccc--cccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHH
Confidence 6532111 1345899999999999997642110001110000 0012222222 222222212238999999999999
Q ss_pred hhhhhhhcCCCchhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHHHHHHh-----------cccchhhHHHHHH
Q 001344 474 ALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKT-----------SDKSILPHMKDIA 542 (1096)
Q Consensus 474 ~l~~fl~~~~~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl~~~-----------~~~~l~P~l~~i~ 542 (1096)
+|..++ .++++.++++.++..|. + ....||.+||++|.++++. ....+.||++.|+
T Consensus 484 ~~~~~~--~~~~l~~~l~~l~~~L~-------d----~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll 550 (960)
T 1wa5_C 484 TFRNQL--TKAQLIELMPILATFLQ-------T----DEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILL 550 (960)
T ss_dssp HTGGGS--CHHHHHHHHHHHHHHTT-------C----SCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHH
T ss_pred HHHhhC--CHHHHHHHHHHHHHHhC-------C----CChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHH
Confidence 999876 45677888888877663 1 2457999999999999984 2456899999999
Q ss_pred HHHHHHHHccc---ccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhHHHHhhhc
Q 001344 543 DTMAYLQREGR---LLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQWM 594 (1096)
Q Consensus 543 ~~i~~l~~~~~---L~~~e~~~L~Eal~~i~~~~~~~~q~~~l~~ll~P~~~~W~ 594 (1096)
+.+-.++.+.. ....+.-.+++++..++...+.+-. .++..+++++...|.
T Consensus 551 ~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~-p~~~~l~~~L~~~l~ 604 (960)
T 1wa5_C 551 KNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQ-PLFPQLLAQFIEIVT 604 (960)
T ss_dssp HHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTG-GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHH
Confidence 88888877531 1112456889999888763222222 266778888877775
No 10
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.73 E-value=4e-15 Score=190.65 Aligned_cols=427 Identities=12% Similarity=0.036 Sum_probs=272.8
Q ss_pred hhHHHHHHHHHHHHHHHhhccc-chhhHHHHHHHhhcC--ChhHHHHHHHHHHhhhhhhcccccCchHHHHHHHHHHHHh
Q 001344 10 EWALKSQTAALVAEIVRREGIN-LWQELFPSLVSLSSK--GPIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGLTQ 86 (1096)
Q Consensus 10 ~~~irnkla~vlveIvkrewp~-~Wp~fl~~L~~l~~~--~~~~~El~L~iL~~L~EDv~~~~edl~~~Rr~~ll~~L~~ 86 (1096)
+..+|++++++++.|++.+||. .||++++.|++..+. ++..++.++.+|..+++++.. +. | .+..
T Consensus 108 ~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~---~~---~------~~~~ 175 (861)
T 2bpt_A 108 EPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADP---QS---Q------ALVS 175 (861)
T ss_dssp SHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSST---TS---S------TTGG
T ss_pred chHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCh---hh---h------HHHH
Confidence 4678999999999999999995 999999999998854 678999999999999988542 11 0 1223
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHHHHHHHHHhccccCCcchhc---ccCcHHHHHhh--cCChh
Q 001344 87 SLPEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLA---KYGIIHGCGFL--LSSPD 161 (1096)
Q Consensus 87 ~~p~I~~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~---~~~ll~~L~~l--l~~~~ 161 (1096)
.++.|++.+...+... .....+..+++++++.+++|+....-. ...+++.++.. .++++
T Consensus 176 ~~~~ll~~l~~~l~~~----------------~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 239 (861)
T 2bpt_A 176 SSNNILIAIVQGAQST----------------ETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIE 239 (861)
T ss_dssp GHHHHHHHHHHHHSTT----------------CCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHH
T ss_pred HHHHHHHHHHHhhcCC----------------CCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHH
Confidence 3556666665544320 012347888999999988887533211 11255555422 23577
Q ss_pred HhhHHHHHHHHHcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhhcc
Q 001344 162 FRLHACEFFKLVSPRKGPADASASEFESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHC 241 (1096)
Q Consensus 162 ~R~~A~ecL~~i~sr~~~~~~~~~~f~~~l~~i~~~~~~~~~~~~~~~~~~~~~~dE~~y~f~k~l~e~L~~lg~~~~~~ 241 (1096)
+|..|++||..++.+. ++. |..
T Consensus 240 ~r~~a~~~l~~l~~~~--~~~----~~~---------------------------------------------------- 261 (861)
T 2bpt_A 240 VQAAAFGCLCKIMSKY--YTF----MKP---------------------------------------------------- 261 (861)
T ss_dssp HHHHHHHHHHHHHHHH--GGG----CHH----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHH--HHH----HHH----------------------------------------------------
Confidence 7888888887776543 100 000
Q ss_pred cccccccHH-HHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhh-hccccccCCCCCcccCCCCCCCCcchhhhhhhhcc
Q 001344 242 IAREDTILS-MYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMS-KTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFL 319 (1096)
Q Consensus 242 ~~~~~~~l~-~~L~~lL~~t~hpsl~vs~~~l~~W~~lL~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (1096)
.+. .+++.++....+++..+...+++||..+.+.... ..+.... + . .|.. .++ .
T Consensus 262 ------~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-~-~----~~~~-------~~~-----~ 317 (861)
T 2bpt_A 262 ------YMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQF-P-Q----SPLQ-------SYN-----F 317 (861)
T ss_dssp ------HHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHC-T-T----CSCC-------CCC-----H
T ss_pred ------HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhc-c-C----Cchh-------hHH-----H
Confidence 111 2233334444566677888899999988876211 0000000 0 0 0000 000 0
Q ss_pred hhhhHHHHHHHHHHHhhcccCCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHhhcc
Q 001344 320 NDDISGAILDISFQRLVKREKAPGTQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLL 399 (1096)
Q Consensus 320 ~~~il~~Ll~~~~~rm~~~e~~~~~~~~~e~~~~Dfd~~~ef~~~Rk~~~~ilr~i~~~~P~~~~~~l~~~l~~~l~~~~ 399 (1096)
...++..++..+...|.+.++ +++| +.++.|+...+.+..++...+...++.+...+...+.+
T Consensus 318 ~~~~~~~il~~ll~~l~~~~~------------d~~d---~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~-- 380 (861)
T 2bpt_A 318 ALSSIKDVVPNLLNLLTRQNE------------DPED---DDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITA-- 380 (861)
T ss_dssp HHHHHHHHHHHHHHHTTCCCC------------C-CC---CCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHhccc------------cccc---ccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCC--
Confidence 013344455555555543211 1111 12588888999998888877777677666766666543
Q ss_pred cCCCChhhHHHHHhHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHHHHHHHHH-hcCCCCchHHHHHHHHHHhhhhh
Q 001344 400 ISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLL-SLKWTEPPLVVALGHYLDALGPF 478 (1096)
Q Consensus 400 ~~~~~s~~~~~~ea~~~~leav~~g~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll-~~~~~dP~l~s~~~~~l~~l~~f 478 (1096)
..|...++....++++.+++.. ..+.+.+..++..++ .++.++|.+|...+++++.+..+
T Consensus 381 ------~~~~~r~~a~~~l~~i~~~~~~-------------~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 441 (861)
T 2bpt_A 381 ------DNWRNREAAVMAFGSIMDGPDK-------------VQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADS 441 (861)
T ss_dssp ------SSHHHHHHHHHHHHHTSSSSCH-------------HHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred ------CChhHHHHHHHHHHHHHcCCCH-------------HHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 2366777777776666543210 112233445555555 24677899999999999999998
Q ss_pred hhcC---CCchhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHHHHHHhcc----cchhhHHHHHHHHHHHHHHc
Q 001344 479 LKYY---PDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSD----KSILPHMKDIADTMAYLQRE 551 (1096)
Q Consensus 479 l~~~---~~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl~~~~~----~~l~P~l~~i~~~i~~l~~~ 551 (1096)
+..+ ++++..++..+++.+. + . .+||..||.+|..+++... ..+.||++.++..+..++..
T Consensus 442 ~~~~~~~~~~~~~~l~~l~~~l~-------~----~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~ 509 (861)
T 2bpt_A 442 VAESIDPQQHLPGVVQACLIGLQ-------D----H-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANR 509 (861)
T ss_dssp HGGGSCTTTTHHHHHHHHHHHHT-------S----C-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTC
T ss_pred hhhhcCCHHHHHHHHHHHHHHhc-------c----C-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhC
Confidence 7643 5688899998888763 1 1 4799999999999999864 67889999998888777764
Q ss_pred ccccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhHHHHhhhch
Q 001344 552 GRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQWMQ 595 (1096)
Q Consensus 552 ~~L~~~e~~~L~Eal~~i~~~~~~~~q~~~l~~ll~P~~~~W~~ 595 (1096)
......-+...+++++.++...+.+ ...++..+++++.+.|.+
T Consensus 510 ~d~~~~vr~~a~~al~~l~~~~~~~-~~~~~~~l~~~l~~~l~~ 552 (861)
T 2bpt_A 510 IDNEFNARASAFSALTTMVEYATDT-VAETSASISTFVMDKLGQ 552 (861)
T ss_dssp SCCGGGHHHHHHHHHHHHHHHCCGG-GHHHHHHHHHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHHHHcchh-hHHHHHHHHHHHHHHHHH
Confidence 3333455778899999998744433 456788888888888863
No 11
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.62 E-value=2.1e-12 Score=165.80 Aligned_cols=427 Identities=13% Similarity=0.075 Sum_probs=254.9
Q ss_pred HHHHHHHHHHHHHHHhhcc-cchhhHHHHHHHhhc-C--ChhHHHHHHHHHHhhhhhhcccccCchHHHHHHHHHHHHhh
Q 001344 12 ALKSQTAALVAEIVRREGI-NLWQELFPSLVSLSS-K--GPIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGLTQS 87 (1096)
Q Consensus 12 ~irnkla~vlveIvkrewp-~~Wp~fl~~L~~l~~-~--~~~~~El~L~iL~~L~EDv~~~~edl~~~Rr~~ll~~L~~~ 87 (1096)
.+ +++++++.+|++++|| ..||++++.|.+..+ . ++..++.++.+|..+++++.. + .+...
T Consensus 105 ~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~---~-----------~~~~~ 169 (876)
T 1qgr_A 105 RP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP---E-----------QLQDK 169 (876)
T ss_dssp SS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH---H-----------HHGGG
T ss_pred HH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCH---h-----------hHHhH
Confidence 45 8899999999999999 999999999999874 4 578899999999999987531 0 12233
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHHHHHHHHHhccccCCcchhcccCcHHHHHhhcCChhHhhHHH
Q 001344 88 LPEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAKYGIIHGCGFLLSSPDFRLHAC 167 (1096)
Q Consensus 88 ~p~I~~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~~~~ll~~L~~ll~~~~~R~~A~ 167 (1096)
++.+++.+...+... -+++.+|..|+
T Consensus 170 ~~~ll~~l~~~l~~~------------------------------------------------------~~~~~vr~~a~ 195 (876)
T 1qgr_A 170 SNEILTAIIQGMRKE------------------------------------------------------EPSNNVKLAAT 195 (876)
T ss_dssp HHHHHHHHHHHHSTT------------------------------------------------------CSCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCC------------------------------------------------------CCCHHHHHHHH
Confidence 445544443332210 01234555555
Q ss_pred HHHHHHcCCCCCCCCChHHH-HHHHHHHHHHHHHHHHHHhhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhhccccccc
Q 001344 168 EFFKLVSPRKGPADASASEF-ESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIARED 246 (1096)
Q Consensus 168 ecL~~i~sr~~~~~~~~~~f-~~~l~~i~~~~~~~~~~~~~~~~~~~~~~dE~~y~f~k~l~e~L~~lg~~~~~~~~~~~ 246 (1096)
+||..++..-. .......+ +.++..++.. + . +.+....+..++.+..+.......+.
T Consensus 196 ~~l~~~~~~~~-~~~~~~~~~~~il~~l~~~----~--------~------~~~~~vr~~a~~~l~~l~~~~~~~~~--- 253 (876)
T 1qgr_A 196 NALLNSLEFTK-ANFDKESERHFIMQVVCEA----T--------Q------CPDTRVRVAALQNLVKIMSLYYQYME--- 253 (876)
T ss_dssp HHHHHHGGGCH-HHHTSHHHHHHHHHHHHHH----T--------T------CSSHHHHHHHHHHHHHHHHHSGGGCH---
T ss_pred HHHHHHHHHHH-HHHHhHHHHHHHHHHHHHH----c--------C------CCCHHHHHHHHHHHHHHHHHhHHHHH---
Confidence 55555543210 00000001 0111111110 1 0 11223455566666666544433221
Q ss_pred ccHH-HHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhh----hccccccCCCCCcccCCCCCCCCcchhhhhhhhcchh
Q 001344 247 TILS-MYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMS----KTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLND 321 (1096)
Q Consensus 247 ~~l~-~~L~~lL~~t~hpsl~vs~~~l~~W~~lL~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (1096)
+.+. .+++.++....+++..+...+++||..+.+.... ..+...... .|. ...... . .
T Consensus 254 ~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~----~-----~ 316 (876)
T 1qgr_A 254 TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGR------PPE--HTSKFY----A-----K 316 (876)
T ss_dssp HHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS------CCS--SCCCCH----H-----H
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCC------Ccc--chhHHH----H-----H
Confidence 2344 6778888888899999999999999999876210 000000000 000 000000 0 1
Q ss_pred hhHHHHHHHHHHHhhcccCCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHhhcccC
Q 001344 322 DISGAILDISFQRLVKREKAPGTQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLIS 401 (1096)
Q Consensus 322 ~il~~Ll~~~~~rm~~~e~~~~~~~~~e~~~~Dfd~~~ef~~~Rk~~~~ilr~i~~~~P~~~~~~l~~~l~~~l~~~~~~ 401 (1096)
..+..++..+.+.|.+.++ |.| ++.++.|+.....+..++...+...++.+...+...+.+
T Consensus 317 ~~~~~ll~~ll~~l~~~~~-------------d~~--~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~---- 377 (876)
T 1qgr_A 317 GALQYLVPILTQTLTKQDE-------------NDD--DDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKN---- 377 (876)
T ss_dssp HHHHHHHHHHHHHTTCCCS-------------SCC--TTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTC----
T ss_pred HHHHHHhHHHHHHhhcccc-------------ccc--ccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccC----
Confidence 1233444444445543211 111 123688999999999998877766666666666555433
Q ss_pred CCChhhHHHHHhHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHHHHHHHHH-hcCCCCchHHHHHHHHHHhhhhhhh
Q 001344 402 TMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLL-SLKWTEPPLVVALGHYLDALGPFLK 480 (1096)
Q Consensus 402 ~~~s~~~~~~ea~~~~leav~~g~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll-~~~~~dP~l~s~~~~~l~~l~~fl~ 480 (1096)
+.|...++....+..+..++.. ..+.+.+..++..++ .++.++|.+|...++.++.+...+.
T Consensus 378 ----~~~~~r~~a~~~l~~i~~~~~~-------------~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 440 (876)
T 1qgr_A 378 ----PDWRYRDAAVMAFGCILEGPEP-------------SQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 440 (876)
T ss_dssp ----SSHHHHHHHHHHHHHTSSSSCH-------------HHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCG
T ss_pred ----CChHHHHHHHHHHHHHHcCCCH-------------HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCc
Confidence 2366677776666665443210 011122333444333 2367889999999999999888765
Q ss_pred c---CCCchhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHHHHHHhcc--------------cchhhHHHHHHH
Q 001344 481 Y---YPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSD--------------KSILPHMKDIAD 543 (1096)
Q Consensus 481 ~---~~~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl~~~~~--------------~~l~P~l~~i~~ 543 (1096)
. .++++..+++.++..+. + . .+||.+||.+|.+++.... ..+.||++.|+.
T Consensus 441 ~~~~~~~~l~~~l~~l~~~l~-------~----~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~ 508 (876)
T 1qgr_A 441 EAAINDVYLAPLLQCLIEGLS-------A----E-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQ 508 (876)
T ss_dssp GGTSSTTTHHHHHHHHHHHTT-------S----C-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHH
T ss_pred hhcccHHHHHHHHHHHHHHHc-------C----C-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHH
Confidence 4 45788999999988763 1 1 4689999999999998854 358899999988
Q ss_pred HHHHHHHcccc-cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhHHHHhhhch
Q 001344 544 TMAYLQREGRL-LRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQWMQ 595 (1096)
Q Consensus 544 ~i~~l~~~~~L-~~~e~~~L~Eal~~i~~~~~~~~q~~~l~~ll~P~~~~W~~ 595 (1096)
.+..++....- ...-+...+|+++.++...+.+ ...++..+++++.+.|..
T Consensus 509 ~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~-~~~~~~~l~~~l~~~l~~ 560 (876)
T 1qgr_A 509 KLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKD-CYPAVQKTTLVIMERLQQ 560 (876)
T ss_dssp HHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCST-THHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchh-hHHHHHHHHHHHHHHHHH
Confidence 88766654211 1234467999999998755543 456889999999998864
No 12
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.18 E-value=1.4e-09 Score=128.31 Aligned_cols=345 Identities=14% Similarity=0.086 Sum_probs=197.7
Q ss_pred HHHHHHHHHHHHhhccc-chhhHHHHHHHhhc-C--ChhHHHHHHHHHHhhhhhhcccccCchHHHHHHHHHHHHhhHhH
Q 001344 15 SQTAALVAEIVRREGIN-LWQELFPSLVSLSS-K--GPIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGLTQSLPE 90 (1096)
Q Consensus 15 nkla~vlveIvkrewp~-~Wp~fl~~L~~l~~-~--~~~~~El~L~iL~~L~EDv~~~~edl~~~Rr~~ll~~L~~~~p~ 90 (1096)
++++.++++|++++||. .||++++.|++..+ . ++..++.++.+|..++++... +. +...++.
T Consensus 107 ~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~--~~------------~~~~~~~ 172 (462)
T 1ibr_B 107 SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--EQ------------LQDKSNE 172 (462)
T ss_dssp CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCG--GG------------TGGGHHH
T ss_pred hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCc--hh------------hHhHHHH
Confidence 67899999999999995 99999999999874 4 678999999999999998642 00 1222344
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHHHHHHHHHhccccCCcchhcccCcHHHHHhhcCChhHhhHHHHHH
Q 001344 91 ILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAKYGIIHGCGFLLSSPDFRLHACEFF 170 (1096)
Q Consensus 91 I~~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~~~~ll~~L~~ll~~~~~R~~A~ecL 170 (1096)
+++.+...+... . +++.+|..|+.|+
T Consensus 173 ll~~l~~~l~~~-----------------~-------------------------------------~~~~vr~~a~~~l 198 (462)
T 1ibr_B 173 ILTAIIQGMRKE-----------------E-------------------------------------PSNNVKLAATNAL 198 (462)
T ss_dssp HHHHHHHHHSTT-----------------C-------------------------------------CCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-----------------C-------------------------------------CCHHHHHHHHHHH
Confidence 444444333210 0 1234555555555
Q ss_pred HHHcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhhcccccccccHH
Q 001344 171 KLVSPRKGPADASASEFESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIAREDTILS 250 (1096)
Q Consensus 171 ~~i~sr~~~~~~~~~~f~~~l~~i~~~~~~~~~~~~~~~~~~~~~~dE~~y~f~k~l~e~L~~lg~~~~~~~~~~~~~l~ 250 (1096)
..++.--. .......+.. .+... ..+. . .+.+....+..++.+..++......+. +.+.
T Consensus 199 ~~~~~~~~-~~~~~~~~~~---~l~~~----l~~~----~------~~~~~~vr~~~~~~l~~l~~~~~~~~~---~~~~ 257 (462)
T 1ibr_B 199 LNSLEFTK-ANFDKESERH---FIMQV----VCEA----T------QCPDTRVRVAALQNLVKIMSLYYQYME---TYMG 257 (462)
T ss_dssp HHHTTTTH-HHHTSHHHHH---HHHHH----HHHH----T------TCSSHHHHHHHHHHHHHHHHHCGGGCT---TTTT
T ss_pred HHHHHHHH-HhhhhhHHHH---HHHHH----HHHh----c------CCCCHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 54432100 0000000111 11111 1110 0 111234667777777777665544332 2344
Q ss_pred -HHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhhhccccccCCCCCcccCCCCCCCCcchhhhhhhhcchhhhHHHHHH
Q 001344 251 -MYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLNDDISGAILD 329 (1096)
Q Consensus 251 -~~L~~lL~~t~hpsl~vs~~~l~~W~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~Ll~ 329 (1096)
.+++.++..+.+++..+...++.||..+.+............. ..+.+.. .. ..... ...++.++.
T Consensus 258 ~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~-~~----~~~~~-----~~~~~~l~p 324 (462)
T 1ibr_B 258 PALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAA---EQGRPPE-HT----SKFYA-----KGALQYLVP 324 (462)
T ss_dssp TTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTT---CSSSCSS-CC----CCCHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhccccc---ccCCCcc-ch----hHHHH-----HHHhhhccH
Confidence 6677788888899999999999999998876321100000000 0000000 00 00000 112333433
Q ss_pred HHHHHhhcccCCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHhhcccCCCChhhHH
Q 001344 330 ISFQRLVKREKAPGTQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLA 409 (1096)
Q Consensus 330 ~~~~rm~~~e~~~~~~~~~e~~~~Dfd~~~ef~~~Rk~~~~ilr~i~~~~P~~~~~~l~~~l~~~l~~~~~~~~~s~~~~ 409 (1096)
.+.+.|...+ + | .+++.++.|+...+.+..++...+...++.+...+...+.+ +.|.
T Consensus 325 ~l~~~l~~~d------------~-d--~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~--------~~~~ 381 (462)
T 1ibr_B 325 ILTQTLTKQD------------E-N--DDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKN--------PDWR 381 (462)
T ss_dssp HHHHHTTCCC------------S-S--CCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTC--------SSHH
T ss_pred HHHHHHHhcc------------c-c--cccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC--------CChH
Confidence 3334343211 0 1 11123578999999999999988877777777777666643 3477
Q ss_pred HHHhHHHHHHHHHHhhccC-CCCCCCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhhhhc---CCCc
Q 001344 410 VMESMQSALENVVSAVFDG-SNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKY---YPDA 485 (1096)
Q Consensus 410 ~~ea~~~~leav~~g~~~~-~~~~~~~~~~~~~~l~~~l~~Ll~~ll~~~~~dP~l~s~~~~~l~~l~~fl~~---~~~~ 485 (1096)
..++...+++++..|+... ...+ .+.+++.+... ++.++|.+|...+++++.+...+.. .+++
T Consensus 382 ~r~aal~~l~~l~~~~~~~~~~~~-------l~~~~~~l~~~------l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~ 448 (462)
T 1ibr_B 382 YRDAAVMAFGCILEGPEPSQLKPL-------VIQAMPTLIEL------MKDPSVVVRDTAAWTVGRICELLPEAAINDVY 448 (462)
T ss_dssp HHHHHHHHHHHTSSSSCTTTTCTT-------TTTHHHHHHHG------GGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTT
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHH-------HHHHHHHHHHH------hcCCCHHHHHHHHHHHHHHHHhcccccccHHH
Confidence 8888888888887765421 1111 12222322222 3678899999999999999987765 4578
Q ss_pred hhHHHHHHHHhh
Q 001344 486 VGGVISKLFELL 497 (1096)
Q Consensus 486 l~~VL~klf~~l 497 (1096)
+.++++.++..|
T Consensus 449 l~~ll~~Ll~~L 460 (462)
T 1ibr_B 449 LAPLLQCLIEGL 460 (462)
T ss_dssp HHHHHHHHHCC-
T ss_pred HHHHHHHHHHHh
Confidence 899998886654
No 13
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.46 E-value=0.00013 Score=93.17 Aligned_cols=436 Identities=13% Similarity=0.119 Sum_probs=241.0
Q ss_pred hhHHHHHHHHHHHHHHHhhcccchhhHHHHHHHhh-cCChhHHHHHHHHHHhhhhhhcccccCchHHHHHHHHHHHHhhH
Q 001344 10 EWALKSQTAALVAEIVRREGINLWQELFPSLVSLS-SKGPIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGLTQSL 88 (1096)
Q Consensus 10 ~~~irnkla~vlveIvkrewp~~Wp~fl~~L~~l~-~~~~~~~El~L~iL~~L~EDv~~~~edl~~~Rr~~ll~~L~~~~ 88 (1096)
.+-+|...+..+..+++.-....-|.+++-+.+.. +.++..++.++..|..+++-... .+...+
T Consensus 334 ~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~---------------~~~~~l 398 (852)
T 4fdd_A 334 DWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ---------------GMIPYL 398 (852)
T ss_dssp CCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHH---------------HHGGGH
T ss_pred cchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchH---------------HHHHHH
Confidence 46688889999998888766555577777777655 45688899999999888753221 122335
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHHHHHHHHHhccccCCcchh--cccCcHHHHHhhc--CChhHhh
Q 001344 89 PEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDL--AKYGIIHGCGFLL--SSPDFRL 164 (1096)
Q Consensus 89 p~I~~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i--~~~~ll~~L~~ll--~~~~~R~ 164 (1096)
+.+++.+...+.. .+..+..+|..+++.|.+|++.... .-.++++.+...+ +++.+|.
T Consensus 399 ~~~l~~l~~~l~d------------------~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~ 460 (852)
T 4fdd_A 399 PELIPHLIQCLSD------------------KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQE 460 (852)
T ss_dssp HHHHHHHHHHTTC------------------SSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHH
T ss_pred HHHHHHHHHHcCC------------------CCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 5666555555432 2245778899999999998754322 1123566654333 4689999
Q ss_pred HHHHHHHHHcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhhccccc
Q 001344 165 HACEFFKLVSPRKGPADASASEFESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIAR 244 (1096)
Q Consensus 165 ~A~ecL~~i~sr~~~~~~~~~~f~~~l~~i~~~~~~~~~~~~~~~~~~~~~~dE~~y~f~k~l~e~L~~lg~~~~~~~~~ 244 (1096)
.|+.+|..++...+. .-.+.+..++..+... .+. . ..+........++.+....|... .
T Consensus 461 ~a~~aL~~l~~~~~~--~l~~~l~~ll~~L~~~----l~~------~----~~~~~~~~~~ai~~l~~~~~~~~----~- 519 (852)
T 4fdd_A 461 AACSAFATLEEEACT--ELVPYLAYILDTLVFA----FSK------Y----QHKNLLILYDAIGTLADSVGHHL----N- 519 (852)
T ss_dssp HHHHHHHHHHHHHGG--GGGGGHHHHHHHHHHH----HHH------C----CHHHHHHHHHHHHHHHHHHGGGG----C-
T ss_pred HHHHHHHHHHHHhhH--hhHhHHHHHHHHHHHH----HHH------h----ChHHHHHHHHHHHHHHHHhhhhh----c-
Confidence 999999988854321 2223344444444332 332 0 00111112222322222222211 1
Q ss_pred ccccHHHHHHHHHH---hhccchhHHHHHHHHHHHHHHHHhhhhccccccCCCCCcccCCCCCCCCcchhhhhhhhcchh
Q 001344 245 EDTILSMYLQQMLG---YFQHFKIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLND 321 (1096)
Q Consensus 245 ~~~~l~~~L~~lL~---~t~hpsl~vs~~~l~~W~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (1096)
....++.+++.++. ....++..+. .+++.+..+.+...... ..++ +
T Consensus 520 ~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~-----------------------------~~~~-~ 568 (852)
T 4fdd_A 520 KPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGF-----------------------------LPYC-E 568 (852)
T ss_dssp CHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGG-----------------------------HHHH-H
T ss_pred cHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhH-----------------------------HHHH-H
Confidence 11234455555553 3333333332 45666666655432110 1111 2
Q ss_pred hhHHHHHHHHHHHhhcccCCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHHccCchHHHHHH-----HHHHHHHHh
Q 001344 322 DISGAILDISFQRLVKREKAPGTQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKV-----SERVMAIIN 396 (1096)
Q Consensus 322 ~il~~Ll~~~~~rm~~~e~~~~~~~~~e~~~~Dfd~~~ef~~~Rk~~~~ilr~i~~~~P~~~~~~l-----~~~l~~~l~ 396 (1096)
.+++.++..+...+..+.....+ .+. .+. .+. ++|....+.+..++..-.....+++ ...+...+.
T Consensus 569 ~i~~~~~~~l~~~l~~~~~~~~~---~~~--~~~-~d~---~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~ 639 (852)
T 4fdd_A 569 PVYQRCVNLVQKTLAQAMLNNAQ---PDQ--YEA-PDK---DFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQ 639 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC---TTT--SCC-CCT---HHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhcC---Ccc--cCC-Ccc---hHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhC
Confidence 34444444443333211000000 000 010 111 3566566666666553333333333 222222222
Q ss_pred hcccCCCChhhHHHHHhHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHHHHHHHHH-hcCCCCchHHHHHHHHHHhh
Q 001344 397 SLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLL-SLKWTEPPLVVALGHYLDAL 475 (1096)
Q Consensus 397 ~~~~~~~~s~~~~~~ea~~~~leav~~g~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll-~~~~~dP~l~s~~~~~l~~l 475 (1096)
+ +..-..++.+.++..+...+.....+| +..++..+. .++..++.++...+|.++.+
T Consensus 640 ~--------~~~~vr~~a~~~l~~l~~~~~~~~~~~--------------l~~~lp~l~~~l~~~~~~v~~~a~~alg~i 697 (852)
T 4fdd_A 640 D--------KMPEVRQSSFALLGDLTKACFQHVKPC--------------IADFMPILGTNLNPEFISVCNNATWAIGEI 697 (852)
T ss_dssp C--------SSHHHHHHHHHHHHHHHHHCGGGTGGG--------------HHHHHHHHHHTCCTTSHHHHHHHHHHHHHH
T ss_pred C--------CChhHHHHHHHHHHHHHHHhhHHHHHH--------------HHHHHHHHHHHcCccchHHHHHHHHHHHHH
Confidence 1 123356667777777776655422111 223333333 23667888999999999988
Q ss_pred hhhhh-cCCCchhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHcccc
Q 001344 476 GPFLK-YYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRL 554 (1096)
Q Consensus 476 ~~fl~-~~~~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl~~~~~~~l~P~l~~i~~~i~~l~~~~~L 554 (1096)
.+-+. ...+++..++..++..+.. |. ..+.+++.||.++-||+..+|..+.||++.++..+-..+.. .=
T Consensus 698 ~~~~~~~~~p~~~~il~~L~~~l~~-~~--------~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~-~~ 767 (852)
T 4fdd_A 698 SIQMGIEMQPYIPMVLHQLVEIINR-PN--------TPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRN-IR 767 (852)
T ss_dssp HHHHGGGGGGGTHHHHHHHHHHHTC-SS--------CCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHT-SC
T ss_pred HHHhhHhHHHHHHHHHHHHHHHhCC-CC--------CCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhcc-cc
Confidence 77664 3356778888888887641 11 23579999999999999999999999999997766655543 12
Q ss_pred cHHHHHHHHHHHHHHhc
Q 001344 555 LRGEHNLLGEAFLVMAS 571 (1096)
Q Consensus 555 ~~~e~~~L~Eal~~i~~ 571 (1096)
+..|+..-|.++..+..
T Consensus 768 d~~e~~~a~~~l~~li~ 784 (852)
T 4fdd_A 768 DNEEKDSAFRGICTMIS 784 (852)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 24578888888877764
No 14
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.44 E-value=5.5e-05 Score=100.66 Aligned_cols=453 Identities=10% Similarity=0.036 Sum_probs=231.5
Q ss_pred hhhHHHHHHHHHHHHHHHhhcccchhhHHHHHHHhh-cCChhHHHHHHHHHHhhhhhhcccccCchHHHHHHHHHHHHhh
Q 001344 9 EEWALKSQTAALVAEIVRREGINLWQELFPSLVSLS-SKGPIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGLTQS 87 (1096)
Q Consensus 9 e~~~irnkla~vlveIvkrewp~~Wp~fl~~L~~l~-~~~~~~~El~L~iL~~L~EDv~~~~edl~~~Rr~~ll~~L~~~ 87 (1096)
+.+.+|+.++..+..+++.--+..|+.+++.|+... ...+..++.+...|..+++++.....+.. .....
T Consensus 60 ~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~---------~~~~~ 130 (1230)
T 1u6g_C 60 KNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSA---------LAANV 130 (1230)
T ss_dssp SSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CC---------THHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccc---------hHHHH
Confidence 467889999999999998766678899999998865 45566788889999988887654110000 01122
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHHHHHHHHHhcc----ccCCcchhcccCcHHHHHhhc--CChh
Q 001344 88 LPEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYA----EWAPLPDLAKYGIIHGCGFLL--SSPD 161 (1096)
Q Consensus 88 ~p~I~~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl----~Wip~~~i~~~~ll~~L~~ll--~~~~ 161 (1096)
.+.+++.+...+... ....+...++.++...+ +++.. ++ ..+++.+...+ +++.
T Consensus 131 ~~~llp~L~~~l~~~-----------------~~~~~~~~al~~l~~~~~~~~~~l~~-~~--~~ll~~l~~~L~~~~~~ 190 (1230)
T 1u6g_C 131 CKKITGRLTSAIAKQ-----------------EDVSVQLEALDIMADMLSRQGGLLVN-FH--PSILTCLLPQLTSPRLA 190 (1230)
T ss_dssp HHHHHHHHHHHHSCC-----------------SCHHHHHHHHHHHHHHHHHTCSSCTT-TH--HHHHHHHGGGGGCSSHH
T ss_pred HHHHHHHHHHHHcCC-----------------CchHHHHHHHHHHHHHHHHhHhHHHH-HH--HHHHHHHHHHHcCCcHH
Confidence 445555555444310 01124555566555554 23322 11 33666664333 3478
Q ss_pred HhhHHHHHHHHHcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhhcc
Q 001344 162 FRLHACEFFKLVSPRKGPADASASEFESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHC 241 (1096)
Q Consensus 162 ~R~~A~ecL~~i~sr~~~~~~~~~~f~~~l~~i~~~~~~~~~~~~~~~~~~~~~~dE~~y~f~k~l~e~L~~lg~~~~~~ 241 (1096)
+|..|+.||..++..... ..|+.+|..+... +.. +.+ .+......+.++.+....|....
T Consensus 191 vR~~a~~al~~l~~~~~~-----~~~~~~l~~l~~~----L~~-------~~~--~~~r~~a~~~l~~l~~~~~~~~~-- 250 (1230)
T 1u6g_C 191 VRKRTIIALGHLVMSCGN-----IVFVDLIEHLLSE----LSK-------NDS--MSTTRTYIQCIAAISRQAGHRIG-- 250 (1230)
T ss_dssp HHHHHHHHHHHHTTTC---------CTTHHHHHHHH----HHH-------TCS--SCSCTTHHHHHHHHHHHSSGGGT--
T ss_pred HHHHHHHHHHHHHHhcCH-----HHHHHHHHHHHHH----hcc-------CCc--hhHHHHHHHHHHHHHHHhHHHHH--
Confidence 999999999999875421 1233344444332 221 000 11112234445544444443221
Q ss_pred cccccccHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhhhccccccCCCCCcccCCCCCCCCcchhhhhhhhcchh
Q 001344 242 IAREDTILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLND 321 (1096)
Q Consensus 242 ~~~~~~~l~~~L~~lL~~t~hpsl~vs~~~l~~W~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (1096)
+.+...++.++..+++++..+...++..|..+.+.. ++. + .
T Consensus 251 -----~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~-~~~----------------------------~-----~ 291 (1230)
T 1u6g_C 251 -----EYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRC-PKE----------------------------V-----Y 291 (1230)
T ss_dssp -----TSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCT-TCC----------------------------C-----H
T ss_pred -----HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHC-hHH----------------------------H-----H
Confidence 234567888888888888888888888777776641 110 0 1
Q ss_pred hhHHHHHHHHHHHhhcccCCC--CCCC----Ccc--cccc------ccCChhh-HHHHHHHHHHHHHHHHccCchHHHHH
Q 001344 322 DISGAILDISFQRLVKREKAP--GTQG----PLE--LWSD------DFEGKGD-FSQYRSRLLELVKFVASNKPLVAGVK 386 (1096)
Q Consensus 322 ~il~~Ll~~~~~rm~~~e~~~--~~~~----~~e--~~~~------Dfd~~~e-f~~~Rk~~~~ilr~i~~~~P~~~~~~ 386 (1096)
.+++.++..+.+.|.+.++.. ++.. ..+ ..++ +|+++++ .|..|+...+.+..++...|....++
T Consensus 292 ~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~ 371 (1230)
T 1u6g_C 292 PHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEF 371 (1230)
T ss_dssp HHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHH
T ss_pred HhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHH
Confidence 234444444444444321110 0000 000 0001 1111122 37889999999988887666422111
Q ss_pred HHHHHHH----------------------HHhhc--------------------------cc-------CCCChhhHHHH
Q 001344 387 VSERVMA----------------------IINSL--------------------------LI-------STMPAQDLAVM 411 (1096)
Q Consensus 387 l~~~l~~----------------------~l~~~--------------------------~~-------~~~~s~~~~~~ 411 (1096)
+...+.. .+... .+ ..+.++.+...
T Consensus 372 ~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr 451 (1230)
T 1u6g_C 372 YKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTR 451 (1230)
T ss_dssp HTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHH
Confidence 1111111 11000 00 00222333444
Q ss_pred HhHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhhhhcC-CC----ch
Q 001344 412 ESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYY-PD----AV 486 (1096)
Q Consensus 412 ea~~~~leav~~g~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll~~~~~dP~l~s~~~~~l~~l~~fl~~~-~~----~l 486 (1096)
++....+..++.++..... +.+...+..+++.+ +.+.+ .+.+..+.+..+..+++.. ++ ++
T Consensus 452 ~~~~~~L~~l~~~~~~~l~----------~~l~~ll~~l~~~L---~d~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~l 517 (1230)
T 1u6g_C 452 QCCFNMLTELVNVLPGALT----------QHIPVLVPGIIFSL---NDKSS-SSNLKIDALSCLYVILCNHSPQVFHPHV 517 (1230)
T ss_dssp HHHHHHHHHHHHHSTTTTG----------GGHHHHHHHHHHHT---TCSSS-CHHHHHHHHHHHHHHHHSSCGGGGHHHH
T ss_pred HHHHHHHHHHHHHchhhhH----------HHHHHHHHHHHHHH---cCCCC-cchHHHHHHHHHHHHHHhCCHHHHHhHH
Confidence 5555556666555322111 11112222222222 33333 2344555666666666533 33 33
Q ss_pred hHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHHHHHHhccc-------chhhHHHHHHHHHHHHHHcccccHHHH
Q 001344 487 GGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDK-------SILPHMKDIADTMAYLQREGRLLRGEH 559 (1096)
Q Consensus 487 ~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl~~~~~~-------~l~P~l~~i~~~i~~l~~~~~L~~~e~ 559 (1096)
..++..++..+. + ....+|..|...+..+++.... .+.||++.++..+-..+....-...-|
T Consensus 518 ~~llp~L~~~l~-------d----~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr 586 (1230)
T 1u6g_C 518 QALVPPVVACVG-------D----PFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVK 586 (1230)
T ss_dssp TTTHHHHHHHHT-------C----SSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHH
T ss_pred HHHHHHHHHHHc-------c----cchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHH
Confidence 344444444332 1 2336788888888888877544 788999999887766664333344455
Q ss_pred HHHHHHHHHHhcCCC
Q 001344 560 NLLGEAFLVMASAAG 574 (1096)
Q Consensus 560 ~~L~Eal~~i~~~~~ 574 (1096)
..-.++++.++...+
T Consensus 587 ~~a~~~lg~L~~~~g 601 (1230)
T 1u6g_C 587 ERAISCMGQIICNLG 601 (1230)
T ss_dssp HHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHHhC
Confidence 666788888876433
No 15
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.00 E-value=0.0041 Score=78.97 Aligned_cols=111 Identities=7% Similarity=0.039 Sum_probs=67.5
Q ss_pred CCchHHHHHHHHHHhhhhhhhc-CCCchhHHHHHHHHhhccCCCccCCC-CchHHHHHHHHHHHHHHHHHHhcc---cch
Q 001344 460 TEPPLVVALGHYLDALGPFLKY-YPDAVGGVISKLFELLTSLPFVFKDP-STNSARHARLQICTSFIRIAKTSD---KSI 534 (1096)
Q Consensus 460 ~dP~l~s~~~~~l~~l~~fl~~-~~~~l~~VL~klf~~l~~~p~~~~~~-~~~~~k~vR~~A~~~f~rl~~~~~---~~l 534 (1096)
.++.++...+.+++.+...... ..+++..++..+++.+..-++ ..++ ..+.+..+|..++.++..++.... ..+
T Consensus 694 ~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~-~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~ 772 (861)
T 2bpt_A 694 ARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPE-NGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEAL 772 (861)
T ss_dssp CCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCS-SSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred ccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCC-CCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence 3578888888877777665432 233556666666665542121 1010 012345799999999999998865 668
Q ss_pred hhHHHHHHHHHHHHHHccc--ccHHHHHHHHHHHHHHhc
Q 001344 535 LPHMKDIADTMAYLQREGR--LLRGEHNLLGEAFLVMAS 571 (1096)
Q Consensus 535 ~P~l~~i~~~i~~l~~~~~--L~~~e~~~L~Eal~~i~~ 571 (1096)
.||++.+.+.+........ .+..=+..-.++++.++.
T Consensus 773 ~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~ 811 (861)
T 2bpt_A 773 FPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAA 811 (861)
T ss_dssp GGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHH
Confidence 8999999887776554211 023333445555555554
No 16
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=97.72 E-value=0.016 Score=69.85 Aligned_cols=346 Identities=13% Similarity=0.055 Sum_probs=167.2
Q ss_pred HHHHHHHHHHHHhccccCCcchhcccCcHHHHHhhcC--ChhHhhHHHHHHHHHcCCCCCCCCChHHHHHHHHHHHHHHH
Q 001344 122 AATVTATLNAINAYAEWAPLPDLAKYGIIHGCGFLLS--SPDFRLHACEFFKLVSPRKGPADASASEFESAMHDVFQILM 199 (1096)
Q Consensus 122 ~~~v~~aL~tl~~yl~Wip~~~i~~~~ll~~L~~ll~--~~~~R~~A~ecL~~i~sr~~~~~~~~~~f~~~l~~i~~~~~ 199 (1096)
..+..++.++++.+.+..+.... ...+++.+..+++ ++.+|..|++||..+...-. .+.+. ..+...+.
T Consensus 178 ~~VR~~a~~~l~~l~~~~~~~~~-~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~-----~~~~~---~~~~~~l~ 248 (588)
T 1b3u_A 178 PMVRRAAASKLGEFAKVLELDNV-KSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLP-----QEDLE---ALVMPTLR 248 (588)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHH-HHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSC-----HHHHH---HHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcHHhH-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCC-----HHHHH---HHHHHHHH
Confidence 34666777777777666554322 2356666643333 36788888888877765431 01111 11111111
Q ss_pred HHHHHHhhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhhcccccccccHHHHHHHHHHhhccchhHHHHHHHHHHHHHH
Q 001344 200 KVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIAREDTILSMYLQQMLGYFQHFKIALHFQSLLFWLALM 279 (1096)
Q Consensus 200 ~~~~~~~~~~~~~~~~~dE~~y~f~k~l~e~L~~lg~~~~~~~~~~~~~l~~~L~~lL~~t~hpsl~vs~~~l~~W~~lL 279 (1096)
... .+.+....+..++.+..++...-. ......+++.++.++++++..+...+...+..+.
T Consensus 249 ~~~--------------~d~~~~vR~~a~~~l~~l~~~~~~-----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~ 309 (588)
T 1b3u_A 249 QAA--------------EDKSWRVRYMVADKFTELQKAVGP-----EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFC 309 (588)
T ss_dssp HHH--------------TCSSHHHHHHHHHTHHHHHHHHCH-----HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHc--------------cCCCHHHHHHHHHHHHHHHHHhCc-----ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 111 112234555556555555432111 1123456778888888888888888877776666
Q ss_pred HHhhhhccccccCCCCCcccCCCCCCCCcchhhhhhhhcchhhhHHHHHHHHHHHhhcccCCCCCCCCccccccccCChh
Q 001344 280 RDLMSKTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLNDDISGAILDISFQRLVKREKAPGTQGPLELWSDDFEGKG 359 (1096)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~Ll~~~~~rm~~~e~~~~~~~~~e~~~~Dfd~~~ 359 (1096)
....... ... ...+.++|.+.. +....
T Consensus 310 ~~~~~~~------------------------~~~----~~~~~l~p~l~~-----~l~d~-------------------- 336 (588)
T 1b3u_A 310 ENLSADC------------------------REN----VIMSQILPCIKE-----LVSDA-------------------- 336 (588)
T ss_dssp HTSCTTT------------------------HHH----HHHHTHHHHHHH-----HHTCS--------------------
T ss_pred HHhChhh------------------------hhh----HHHHHHHHHHHH-----HhcCC--------------------
Confidence 5421000 000 001234444322 11100
Q ss_pred hHHHHHHHHHHHHHHHHccCc-hHHHHHHHHHHHHHHhhcccCCCChhhHHHHHhHHHHHHHHHHhhccCCCCCCCCChH
Q 001344 360 DFSQYRSRLLELVKFVASNKP-LVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSE 438 (1096)
Q Consensus 360 ef~~~Rk~~~~ilr~i~~~~P-~~~~~~l~~~l~~~l~~~~~~~~~s~~~~~~ea~~~~leav~~g~~~~~~~~~~~~~~ 438 (1096)
.+..|+.....+..++...+ ....+.+...+...+.+. ..-...+....+..+...+-. + .
T Consensus 337 -~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~--------~~~Vr~~a~~~l~~l~~~~~~--------~-~ 398 (588)
T 1b3u_A 337 -NQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDE--------CPEVRLNIISNLDCVNEVIGI--------R-Q 398 (588)
T ss_dssp -CHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCS--------CHHHHHHHHTTCHHHHHHSCH--------H-H
T ss_pred -CHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC--------chHHHHHHHHHHHHHHHhcCH--------H-H
Confidence 14566655555544443222 222333444444444332 111222333333333332100 0 0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhhhhcCCCchhHHHHHHHHhhccCCCccCCCCchHHHHHHHH
Q 001344 439 VQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQ 518 (1096)
Q Consensus 439 ~~~~l~~~l~~Ll~~ll~~~~~dP~l~s~~~~~l~~l~~fl~~~~~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~ 518 (1096)
..+.+.+.+..+ + +.++..+|...+..++.+...+... .+.+.++..++..+. + ....||..
T Consensus 399 ~~~~~lp~l~~~----~--~d~~~~vr~~~~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~-------d----~~~~Vr~~ 460 (588)
T 1b3u_A 399 LSQSLLPAIVEL----A--EDAKWRVRLAIIEYMPLLAGQLGVE-FFDEKLNSLCMAWLV-------D----HVYAIREA 460 (588)
T ss_dssp HHHHHHHHHHHH----H--TCSSHHHHHHHHHHHHHHHHHHCGG-GCCHHHHHHHHHGGG-------C----SSHHHHHH
T ss_pred HHHHHHHHHHHH----h--cCCCchHHHHHHHHHHHHHHHcCHH-HHHHHHHHHHHHHhc-------C----CcHHHHHH
Confidence 012222323222 2 5677788888888777776544322 123445555555442 2 34579999
Q ss_pred HHHHHHHHHHhcccchhhHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhHHHHh
Q 001344 519 ICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQ 591 (1096)
Q Consensus 519 A~~~f~rl~~~~~~~l~P~l~~i~~~i~~l~~~~~L~~~e~~~L~Eal~~i~~~~~~~~q~~~l~~ll~P~~~ 591 (1096)
|+..+..+++..+... +++.++..+..+... -+..-|....++++.++...+. ..++..+++++..
T Consensus 461 a~~~l~~l~~~~~~~~--~~~~llp~l~~~~~~--~~~~~R~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~ 526 (588)
T 1b3u_A 461 ATSNLKKLVEKFGKEW--AHATIIPKVLAMSGD--PNYLHRMTTLFCINVLSEVCGQ---DITTKHMLPTVLR 526 (588)
T ss_dssp HHHHHHHHHHHHCHHH--HHHHTHHHHHHTTTC--SCHHHHHHHHHHHHHHHHHHHH---HHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHhCchh--HHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHh
Confidence 9999999999865431 334444444333222 2345566667777766643222 2245555555554
No 17
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.69 E-value=0.044 Score=69.53 Aligned_cols=111 Identities=7% Similarity=0.004 Sum_probs=67.4
Q ss_pred CCchHHHHHHHHHHhhhhhhhc-CCCchhHHHHHHHHhhccCCCccCCCC-chHHHHHHHHHHHHHHHHHHhcc------
Q 001344 460 TEPPLVVALGHYLDALGPFLKY-YPDAVGGVISKLFELLTSLPFVFKDPS-TNSARHARLQICTSFIRIAKTSD------ 531 (1096)
Q Consensus 460 ~dP~l~s~~~~~l~~l~~fl~~-~~~~l~~VL~klf~~l~~~p~~~~~~~-~~~~k~vR~~A~~~f~rl~~~~~------ 531 (1096)
.++.++...+++++.+..-+.. ..++++.++..+...+..-++ ..++. .+-...+|..+..++..+++...
T Consensus 705 ~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~-~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~ 783 (876)
T 1qgr_A 705 VHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVD-KSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENV 783 (876)
T ss_dssp SCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSC
T ss_pred ccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccc
Confidence 3456888888877777653322 234667777766665531110 00110 11134799999999998888743
Q ss_pred ----cchhhHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHhc
Q 001344 532 ----KSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMAS 571 (1096)
Q Consensus 532 ----~~l~P~l~~i~~~i~~l~~~~~L~~~e~~~L~Eal~~i~~ 571 (1096)
..+.||++.+.+.+..+.........-+..-..+++.++.
T Consensus 784 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~ 827 (876)
T 1qgr_A 784 HPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCT 827 (876)
T ss_dssp CGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 4688999999877765554322244556666677777765
No 18
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.66 E-value=0.012 Score=78.27 Aligned_cols=487 Identities=8% Similarity=0.028 Sum_probs=226.3
Q ss_pred hhHHHHHHHHHHHHHHHhhccc---------chhhHHHHHHHhhc--CChhHHHHHHHHHHhhhhhhcc----c------
Q 001344 10 EWALKSQTAALVAEIVRREGIN---------LWQELFPSLVSLSS--KGPIQAELVSMMLRWLPEDITV----H------ 68 (1096)
Q Consensus 10 ~~~irnkla~vlveIvkrewp~---------~Wp~fl~~L~~l~~--~~~~~~El~L~iL~~L~EDv~~----~------ 68 (1096)
...+|++++..+..|+..-++. .|+.+++.|+...+ .++..++.++.+|..++++... +
T Consensus 99 ~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~ 178 (1230)
T 1u6g_C 99 KEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILT 178 (1230)
T ss_dssp SSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 3467999999999999988876 59999999998775 4578889999999988864321 1
Q ss_pred -----ccCchHHHHHHHHHHHHhh--------HhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHHHHHHHHHhc
Q 001344 69 -----NEDLEGDRRRLLLRGLTQS--------LPEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAY 135 (1096)
Q Consensus 69 -----~edl~~~Rr~~ll~~L~~~--------~p~I~~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~y 135 (1096)
+++-...=|+...+++... ++.+++.+...+... .. ..+...++++++..
T Consensus 179 ~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~-----------~~------~~~r~~a~~~l~~l 241 (1230)
T 1u6g_C 179 CLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKN-----------DS------MSTTRTYIQCIAAI 241 (1230)
T ss_dssp HHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHT-----------CS------SCSCTTHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccC-----------Cc------hhHHHHHHHHHHHH
Confidence 1111111122222233221 122333333332210 00 01223344444444
Q ss_pred cccCCcchhcc--cCcHHHHHhhc--CChhHhhHHHHHHHHHcCCCCCCCCChHHHHHHHHHHHHHHHHHHHH---H-hh
Q 001344 136 AEWAPLPDLAK--YGIIHGCGFLL--SSPDFRLHACEFFKLVSPRKGPADASASEFESAMHDVFQILMKVSGE---F-LY 207 (1096)
Q Consensus 136 l~Wip~~~i~~--~~ll~~L~~ll--~~~~~R~~A~ecL~~i~sr~~~~~~~~~~f~~~l~~i~~~~~~~~~~---~-~~ 207 (1096)
+..++- .+.. ..+++.+...+ .++++|..|++++..++..- .++-.+.+..++..++.. +.. . +.
T Consensus 242 ~~~~~~-~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~--~~~~~~~l~~li~~ll~~----l~~d~~~~~~ 314 (1230)
T 1u6g_C 242 SRQAGH-RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRC--PKEVYPHVSTIINICLKY----LTYDPNYNYD 314 (1230)
T ss_dssp HHHSSG-GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCT--TCCCHHHHHHHHHHHTTC----CCCC------
T ss_pred HHHhHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHC--hHHHHHhHHHHHHHHHHH----hCCCCCCCCc
Confidence 444443 2211 35788774333 45899999999999888764 222223333333333221 100 0 00
Q ss_pred ----hc-CCC----CCCCC----------hhhhHHHHHHHHHHHHhhhhhhcccccccccHHHHHHHHHHhhccchhHHH
Q 001344 208 ----RS-GTS----AGAID----------ESEFEFAEYICESMVSLGTSNLHCIAREDTILSMYLQQMLGYFQHFKIALH 268 (1096)
Q Consensus 208 ----~~-~~~----~~~~d----------E~~y~f~k~l~e~L~~lg~~~~~~~~~~~~~l~~~L~~lL~~t~hpsl~vs 268 (1096)
+. ..+ .++.+ +......+.-++.+..+....-..+ .+.+...++.++..+.+++..+.
T Consensus 315 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~---~~~~~~l~~~l~~~l~d~~~~Vr 391 (1230)
T 1u6g_C 315 DEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEML---PEFYKTVSPALISRFKEREENVK 391 (1230)
T ss_dssp ------------------------------CTTHHHHHHHHHHHHHHTTCCTTH---HHHHTTTHHHHHSTTSCSSSHHH
T ss_pred ccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHH---HHHHHHHHHHHHHHcCCCchHHH
Confidence 00 000 00000 0011234445555555543111000 11233345666666677777777
Q ss_pred HHHHHHHHHHHHHhhhhccccccCCCCCcccCCCCCCCCcc---hhhhhhhhcchhhhHHHHHHHHHHHhhcccCCCCCC
Q 001344 269 FQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNADSGSGKVD---SRKMRILSFLNDDISGAILDISFQRLVKREKAPGTQ 345 (1096)
Q Consensus 269 ~~~l~~W~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~il~~Ll~~~~~rm~~~e~~~~~~ 345 (1096)
..++.....+++....... .+. +..... ...... ..+++.++..+.+.+..
T Consensus 392 ~~a~~~l~~l~~~~~~~~~------------~~~-~~~~~~~~~~~~~~~-----~~~l~~ll~~l~~~l~~-------- 445 (1230)
T 1u6g_C 392 ADVFHAYLSLLKQTRPVQS------------WLC-DPDAMEQGETPLTML-----QSQVPNIVKALHKQMKE-------- 445 (1230)
T ss_dssp HHHHHHHHHHHHHHCCC-------------------------CCCHHHHH-----HHHTTHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHHHHhccccc------------ccc-CccccccccchHHHH-----HHHhhHHHHHHHHHhcc--------
Confidence 7777765556554211000 000 000000 000011 13344444333322210
Q ss_pred CCccccccccCChhhHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHhhcccCCCChhhHHHHHhHHHHHHHHHHhh
Q 001344 346 GPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAV 425 (1096)
Q Consensus 346 ~~~e~~~~Dfd~~~ef~~~Rk~~~~ilr~i~~~~P~~~~~~l~~~l~~~l~~~~~~~~~s~~~~~~ea~~~~leav~~g~ 425 (1096)
+ -+..|......+..++...|....+++.+.+..++...... ++......+++ ..+..++..
T Consensus 446 --------~------~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~--~~~~~v~~~a~-~~l~~~~~~- 507 (1230)
T 1u6g_C 446 --------K------SVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDK--SSSSNLKIDAL-SCLYVILCN- 507 (1230)
T ss_dssp --------S------CHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCS--SSCHHHHHHHH-HHHHHHHHS-
T ss_pred --------C------CHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCC--CCcchHHHHHH-HHHHHHHHh-
Confidence 0 03445555555555544444322223333333333221000 11112222222 223333221
Q ss_pred ccCCCCCCCCChHHHHHHHHHHHHHHHHHHh-cCCCCchHHHHHHHHHHhhhhhhhc----CC----CchhHHHHHHHHh
Q 001344 426 FDGSNQFGGANSEVQLSLSRIFEGLLRQLLS-LKWTEPPLVVALGHYLDALGPFLKY----YP----DAVGGVISKLFEL 496 (1096)
Q Consensus 426 ~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll~-~~~~dP~l~s~~~~~l~~l~~fl~~----~~----~~l~~VL~klf~~ 496 (1096)
.+... +.+++..++..++. .+.+.+.++...+.++..+...+.. .+ +++..++..++..
T Consensus 508 ------~~~~~------~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~ 575 (1230)
T 1u6g_C 508 ------HSPQV------FHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKR 575 (1230)
T ss_dssp ------SCGGG------GHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHH
T ss_pred ------CCHHH------HHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHH
Confidence 11101 11223333333332 3556677776667777766665543 11 2344555555444
Q ss_pred hccCCCccCCCCchHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHhcCCCHH
Q 001344 497 LTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQ 576 (1096)
Q Consensus 497 l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl~~~~~~~l~P~l~~i~~~i~~l~~~~~L~~~e~~~L~Eal~~i~~~~~~~ 576 (1096)
+.. .+....+|..|...|-.++...+..+.|++..++..+.+.+.+. ..+.....++..++......
T Consensus 576 l~~---------~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e----~~r~~~~~al~~i~~~~~~~ 642 (1230)
T 1u6g_C 576 LKA---------ADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNE----ITRLTTVKALTLIAGSPLKI 642 (1230)
T ss_dssp HSC---------SSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSS----SHHHHHHHHHHHHTTCSSCC
T ss_pred Hhc---------cCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccc----hhHHHHHHHHHHHHhCcccc
Confidence 420 12334799999999999999999889999999877776555432 23444556666665422111
Q ss_pred HHHHHHHHHhHHHHhh
Q 001344 577 QQQEVLAWLLEPLSQQ 592 (1096)
Q Consensus 577 ~q~~~l~~ll~P~~~~ 592 (1096)
.-..++..+++.+...
T Consensus 643 ~~~~~~~~i~~~L~~~ 658 (1230)
T 1u6g_C 643 DLRPVLGEGVPILASF 658 (1230)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHH
Confidence 1235556666655543
No 19
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=97.53 E-value=0.012 Score=71.02 Aligned_cols=386 Identities=13% Similarity=0.114 Sum_probs=199.6
Q ss_pred hhHHHHHHHHHHHHHHHhhcccchhhHHHHHHHhhc-CChhHHHHHHHHHHhhhhhhcc---------c----ccC-chH
Q 001344 10 EWALKSQTAALVAEIVRREGINLWQELFPSLVSLSS-KGPIQAELVSMMLRWLPEDITV---------H----NED-LEG 74 (1096)
Q Consensus 10 ~~~irnkla~vlveIvkrewp~~Wp~fl~~L~~l~~-~~~~~~El~L~iL~~L~EDv~~---------~----~ed-l~~ 74 (1096)
.+..|...+.++..+..+-.+..++.+++-+.++.+ .++..+..++..|..+++.+-. . ..| -..
T Consensus 139 ~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~ 218 (588)
T 1b3u_A 139 WFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDS 218 (588)
T ss_dssp SHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHH
T ss_pred CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHH
Confidence 557888888888888877777788889888888774 4577777888888777653321 0 011 111
Q ss_pred HHHHHHHHHH---HhhHh------HHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHHHHHHHHHhccccCCcchhc
Q 001344 75 DRRRLLLRGL---TQSLP------EILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLA 145 (1096)
Q Consensus 75 ~Rr~~ll~~L---~~~~p------~I~~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~ 145 (1096)
.| +.-...+ ...++ .+++.+...++. ....+..++.++++......+... .
T Consensus 219 vr-~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d------------------~~~~vR~~a~~~l~~l~~~~~~~~-~ 278 (588)
T 1b3u_A 219 VR-LLAVEACVNIAQLLPQEDLEALVMPTLRQAAED------------------KSWRVRYMVADKFTELQKAVGPEI-T 278 (588)
T ss_dssp HH-TTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTC------------------SSHHHHHHHHHTHHHHHHHHCHHH-H
T ss_pred HH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccC------------------CCHHHHHHHHHHHHHHHHHhCccc-c
Confidence 12 1111111 11111 122222221110 112355666666666655443332 2
Q ss_pred ccCcHHHHHhhcC--ChhHhhHHHHHHHHHcCCCCCCCCCh-HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCChhhhH
Q 001344 146 KYGIIHGCGFLLS--SPDFRLHACEFFKLVSPRKGPADASA-SEFESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFE 222 (1096)
Q Consensus 146 ~~~ll~~L~~ll~--~~~~R~~A~ecL~~i~sr~~~~~~~~-~~f~~~l~~i~~~~~~~~~~~~~~~~~~~~~~dE~~y~ 222 (1096)
...+++.+..++. ++.+|..|+.+|..++..-++ +.+. ...+.++..+. ..++ |+ +..
T Consensus 279 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~-~~~~~~~~~~l~p~l~----~~l~--------d~------~~~ 339 (588)
T 1b3u_A 279 KTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSA-DCRENVIMSQILPCIK----ELVS--------DA------NQH 339 (588)
T ss_dssp HHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCT-TTHHHHHHHTHHHHHH----HHHT--------CS------CHH
T ss_pred hhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCh-hhhhhHHHHHHHHHHH----HHhc--------CC------CHH
Confidence 3457777754443 478999999999999875422 1111 11122222221 1111 11 233
Q ss_pred HHHHHHHHHHHhhhhhhcccccccccHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhhhccccccCCCCCcccCCC
Q 001344 223 FAEYICESMVSLGTSNLHCIAREDTILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNAD 302 (1096)
Q Consensus 223 f~k~l~e~L~~lg~~~~~~~~~~~~~l~~~L~~lL~~t~hpsl~vs~~~l~~W~~lL~~~~~~~~~~~~~~~~~~~~~~~ 302 (1096)
..+..+..+..++...-. ......+++.++.++++++..|...++..+..+.+.....
T Consensus 340 vR~~a~~~l~~l~~~~~~-----~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~----------------- 397 (588)
T 1b3u_A 340 VKSALASVIMGLSPILGK-----DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR----------------- 397 (588)
T ss_dssp HHHHHHTTGGGGHHHHCH-----HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH-----------------
T ss_pred HHHHHHHHHHHHHHHhhH-----hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH-----------------
Confidence 444444444333221110 1123456677788888888888888877776666541100
Q ss_pred CCCCCcchhhhhhhhcchhhhHHHHHHHHHHHhhcccCCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHHccC-ch
Q 001344 303 SGSGKVDSRKMRILSFLNDDISGAILDISFQRLVKREKAPGTQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNK-PL 381 (1096)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~il~~Ll~~~~~rm~~~e~~~~~~~~~e~~~~Dfd~~~ef~~~Rk~~~~ilr~i~~~~-P~ 381 (1096)
...+.++|.+... .. | ..|..|....+.+..++... +.
T Consensus 398 ---------------~~~~~~lp~l~~~-----~~----------------d-----~~~~vr~~~~~~l~~l~~~~~~~ 436 (588)
T 1b3u_A 398 ---------------QLSQSLLPAIVEL-----AE----------------D-----AKWRVRLAIIEYMPLLAGQLGVE 436 (588)
T ss_dssp ---------------HHHHHHHHHHHHH-----HT----------------C-----SSHHHHHHHHHHHHHHHHHHCGG
T ss_pred ---------------HHHHHHHHHHHHH-----hc----------------C-----CCchHHHHHHHHHHHHHHHcCHH
Confidence 0012445554421 11 0 01567777777776665432 22
Q ss_pred HHHHHHHHHHHHHHhhcccCCCChhhHHHHHhHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHh-cCCC
Q 001344 382 VAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLS-LKWT 460 (1096)
Q Consensus 382 ~~~~~l~~~l~~~l~~~~~~~~~s~~~~~~ea~~~~leav~~g~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll~-~~~~ 460 (1096)
...+.+...+...+.+ ......++....+..++..+-. ... ...++..+.. .+.+
T Consensus 437 ~~~~~l~~~l~~~l~d--------~~~~Vr~~a~~~l~~l~~~~~~-------------~~~---~~~llp~l~~~~~~~ 492 (588)
T 1b3u_A 437 FFDEKLNSLCMAWLVD--------HVYAIREAATSNLKKLVEKFGK-------------EWA---HATIIPKVLAMSGDP 492 (588)
T ss_dssp GCCHHHHHHHHHGGGC--------SSHHHHHHHHHHHHHHHHHHCH-------------HHH---HHHTHHHHHHTTTCS
T ss_pred HHHHHHHHHHHHHhcC--------CcHHHHHHHHHHHHHHHHHhCc-------------hhH---HHHHHHHHHHHhhCC
Confidence 1112233333333322 1234455565666666553211 111 1222222222 3566
Q ss_pred CchHHHHHHHHHHhhhhhhhcCCCchhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHHHHHHhcccc
Q 001344 461 EPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKS 533 (1096)
Q Consensus 461 dP~l~s~~~~~l~~l~~fl~~~~~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl~~~~~~~ 533 (1096)
++.+|...+++++.+...+... .++..++..+...+. + ...+||..++.+|-++++.....
T Consensus 493 ~~~~R~~a~~~l~~l~~~~~~~-~~~~~~~~~l~~~l~-------d----~~~~Vr~~a~~~l~~l~~~~~~~ 553 (588)
T 1b3u_A 493 NYLHRMTTLFCINVLSEVCGQD-ITTKHMLPTVLRMAG-------D----PVANVRFNVAKSLQKIGPILDNS 553 (588)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH-HHHHHTHHHHHHGGG-------C----SCHHHHHHHHHHHHHHGGGSCHH
T ss_pred CHHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHhhCC-------C----CCchHHHHHHHHHHHHHHHhchh
Confidence 7789998888888887755432 134444444444332 2 33579999999999999876544
No 20
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.28 E-value=0.13 Score=62.56 Aligned_cols=388 Identities=11% Similarity=0.131 Sum_probs=198.3
Q ss_pred hhhHHHHHHHHHHHHHHHhhcccchh--hHHHHHHHhhc-CChhHHHHHHHHHHhhhhhhccc-ccCchHHHHHHHHHHH
Q 001344 9 EEWALKSQTAALVAEIVRREGINLWQ--ELFPSLVSLSS-KGPIQAELVSMMLRWLPEDITVH-NEDLEGDRRRLLLRGL 84 (1096)
Q Consensus 9 e~~~irnkla~vlveIvkrewp~~Wp--~fl~~L~~l~~-~~~~~~El~L~iL~~L~EDv~~~-~edl~~~Rr~~ll~~L 84 (1096)
..+|+|.+++..+..|.+ ..|+.++ ++++.|.++.+ .++..+..++..|..++++-... .-++....-..+++.+
T Consensus 133 ~~~~VRk~A~~al~~i~~-~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l 211 (591)
T 2vgl_B 133 EDPYVRKTAAVCVAKLHD-INAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTAL 211 (591)
T ss_dssp SCHHHHHHHHHHHHHHHH-SSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHh-hChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcC
Confidence 367899999999988887 4588887 48888888764 45677778888888877654321 0011111111122222
Q ss_pred HhhHhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHHHHHHHHHhccccCCcchhcccCcHHHHH--hhcCChhH
Q 001344 85 TQSLPEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAKYGIIHGCG--FLLSSPDF 162 (1096)
Q Consensus 85 ~~~~p~I~~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~~~~ll~~L~--~ll~~~~~ 162 (1096)
...-| | .....|++++.|.. .+.-....+++.+. .-..++.+
T Consensus 212 ~~~~~------------~---------------------~q~~il~~l~~l~~---~~~~~~~~~l~~l~~~l~~~~~~V 255 (591)
T 2vgl_B 212 NECTE------------W---------------------GQIFILDCLSNYNP---KDDREAQSICERVTPRLSHANSAV 255 (591)
T ss_dssp HHCCH------------H---------------------HHHHHHHHHHTSCC---CSHHHHHHHHHHHTTCSCSSTTHH
T ss_pred CCCCc------------h---------------------HHHHHHHHHHHhCC---CChHHHHHHHHHHHHHHcCCChHH
Confidence 11100 0 12234455555542 11111123555553 22345899
Q ss_pred hhHHHHHHHHHcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhhccc
Q 001344 163 RLHACEFFKLVSPRKGPADASASEFESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCI 242 (1096)
Q Consensus 163 R~~A~ecL~~i~sr~~~~~~~~~~f~~~l~~i~~~~~~~~~~~~~~~~~~~~~~dE~~y~f~k~l~e~L~~lg~~~~~~~ 242 (1096)
+.+|+.|+..+...-. . ..+.++..+..+...++.++ ++ ..+-.|.-++.++.+ ...+...+
T Consensus 256 ~~ea~~~i~~l~~~~~-~--~~~~~~~~~~~~~~~L~~L~---------~~--d~~vr~~aL~~l~~i----~~~~p~~~ 317 (591)
T 2vgl_B 256 VLSAVKVLMKFLELLP-K--DSDYYNMLLKKLAPPLVTLL---------SG--EPEVQYVALRNINLI----VQKRPEIL 317 (591)
T ss_dssp HHHHHHHHHHSCCSCC-B--TTBSHHHHHHHTHHHHHHHT---------TS--CHHHHHHHHHHHHHH----HHHCCSTT
T ss_pred HHHHHHHHHHHhhccC-C--CHHHHHHHHHHHHHHHHHHh---------cC--CccHHHHHHHHHHHH----HHhChHHH
Confidence 9999999998864210 0 01122222222221111111 11 123334444444443 22222222
Q ss_pred ccccccHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhhhccccccCCCCCcccCCCCCCCCcchhhhhhhhcchhh
Q 001344 243 AREDTILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLNDD 322 (1096)
Q Consensus 243 ~~~~~~l~~~L~~lL~~t~hpsl~vs~~~l~~W~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (1096)
. .++..++....+| ..|...+++.|..+... ++ + +.
T Consensus 318 ~-------~~~~~~~~~~~d~-~~Ir~~al~~L~~l~~~------------------------~n-------v-----~~ 353 (591)
T 2vgl_B 318 K-------QEIKVFFVKYNDP-IYVKLEKLDIMIRLASQ------------------------AN-------I-----AQ 353 (591)
T ss_dssp T-------TCTTTTSCCTTSC-HHHHHHHHHHHHHTCCS------------------------ST-------H-----HH
T ss_pred H-------HHHHhheeccCCh-HHHHHHHHHHHHHHCCh------------------------hh-------H-----HH
Confidence 1 1111112222334 66777777765543211 00 0 24
Q ss_pred hHHHHHHHHHHHhhcccCCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHhhcccCC
Q 001344 323 ISGAILDISFQRLVKREKAPGTQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLIST 402 (1096)
Q Consensus 323 il~~Ll~~~~~rm~~~e~~~~~~~~~e~~~~Dfd~~~ef~~~Rk~~~~ilr~i~~~~P~~~~~~l~~~l~~~l~~~~~~~ 402 (1096)
++++|.+.+ . |. + .++|+.....+..++...|.. ..|+.+.+-..+...
T Consensus 354 iv~~L~~~l--------------------~-~~--d---~~~r~~~v~aI~~la~~~~~~-~~~~v~~Ll~ll~~~---- 402 (591)
T 2vgl_B 354 VLAELKEYA--------------------T-EV--D---VDFVRKAVRAIGRCAIKVEQS-AERCVSTLLDLIQTK---- 402 (591)
T ss_dssp HHHHHHHHT--------------------T-SS--C---HHHHHHHHHHHHHHHTTCHHH-HHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHH--------------------h-cC--C---HHHHHHHHHHHHHHHHhChhH-HHHHHHHHHHHHccc----
Confidence 555554211 1 00 0 468999888899999888754 355666666666542
Q ss_pred CChhhHHHHHhHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhhhhcC
Q 001344 403 MPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYY 482 (1096)
Q Consensus 403 ~~s~~~~~~ea~~~~leav~~g~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll~~~~~dP~l~s~~~~~l~~l~~fl~~~ 482 (1096)
..+..-|+.. .+..++...+.. +. .. +..|++.+. ...+|.++...+|++|.|+.....
T Consensus 403 ---~~~v~~e~i~-~l~~ii~~~p~~---~~--------~~---v~~L~~~l~--~~~~~~~~~~~~wilGey~~~~~~- 461 (591)
T 2vgl_B 403 ---VNYVVQEAIV-VIRDIFRKYPNK---YE--------SI---IATLCENLD--SLDEPDARAAMIWIVGEYAERIDN- 461 (591)
T ss_dssp ---CHHHHHHHHH-HHHHHHHHSCSS---CC--------TT---HHHHHHTTT--TCCSHHHHHHHHHHHHTTCTTCTT-
T ss_pred ---chHHHHHHHH-HHHHHHHHCcch---HH--------HH---HHHHHHHHH--hccCHHHHHHHHHHHHcccccccC-
Confidence 1244555543 344454543321 10 01 222332221 467899999999999999887654
Q ss_pred CCchhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHcccccHHHHHHH
Q 001344 483 PDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLL 562 (1096)
Q Consensus 483 ~~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl~~~~~~~l~P~l~~i~~~i~~l~~~~~L~~~e~~~L 562 (1096)
.+.+++.+.+.+ . +....||..+.+++.|+....|....|.+..+++... ..+.++.-++|...
T Consensus 462 ---~~~~l~~l~~~~---~--------~~~~~vr~~~l~a~~Kl~~~~p~~~~~~i~~ll~~~~--~d~~d~evrdRA~~ 525 (591)
T 2vgl_B 462 ---ADELLESFLEGF---H--------DESTQVQLTLLTAIVKLFLKKPSETQELVQQVLSLAT--QDSDNPDLRDRGYI 525 (591)
T ss_dssp ---HHHHHHHHSTTC---S--------SSCHHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHH--TTCCCHHHHHHHHH
T ss_pred ---HHHHHHHHHHhh---c--------cCCHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh--hcCCChHHHHHHHH
Confidence 345555552221 1 1234789999999999999988766555555533221 11123444455555
Q ss_pred H
Q 001344 563 G 563 (1096)
Q Consensus 563 ~ 563 (1096)
|
T Consensus 526 y 526 (591)
T 2vgl_B 526 Y 526 (591)
T ss_dssp H
T ss_pred H
Confidence 5
No 21
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=96.84 E-value=0.61 Score=53.77 Aligned_cols=77 Identities=13% Similarity=-0.019 Sum_probs=53.9
Q ss_pred CCCCchHHHHHHHHHHhhhhhhh--cCCCchhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHHHHHHhcccch-
Q 001344 458 KWTEPPLVVALGHYLDALGPFLK--YYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSI- 534 (1096)
Q Consensus 458 ~~~dP~l~s~~~~~l~~l~~fl~--~~~~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl~~~~~~~l- 534 (1096)
+..++.+|...+..++.+..-.. .-.+.++.++..++..+. + ....||..||.++-+++...+..+
T Consensus 376 ~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~-------d----~~~~Vr~~a~~~l~~~~~~~~~~~~ 444 (462)
T 1ibr_B 376 KNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMK-------D----PSVVVRDTAAWTVGRICELLPEAAI 444 (462)
T ss_dssp TCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGG-------C----SCHHHHHHHHHHHHHHHHHGGGGCC
T ss_pred cCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhc-------C----CCHHHHHHHHHHHHHHHHhcccccc
Confidence 46788899988888888775221 112345666666666553 2 234799999999999999987765
Q ss_pred -hhHHHHHHHHH
Q 001344 535 -LPHMKDIADTM 545 (1096)
Q Consensus 535 -~P~l~~i~~~i 545 (1096)
.||++.+++.+
T Consensus 445 ~~~~l~~ll~~L 456 (462)
T 1ibr_B 445 NDVYLAPLLQCL 456 (462)
T ss_dssp STTTHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 47888885544
No 22
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=95.12 E-value=4.9 Score=45.90 Aligned_cols=192 Identities=11% Similarity=0.033 Sum_probs=91.3
Q ss_pred cchhhH---HHHHHHhh-cCChhHHHHHHHHHHhhhhhhcccccCchHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHH
Q 001344 31 NLWQEL---FPSLVSLS-SKGPIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGLTQSLPEILPLLYSLLERHFGAA 106 (1096)
Q Consensus 31 ~~Wp~f---l~~L~~l~-~~~~~~~El~L~iL~~L~EDv~~~~edl~~~Rr~~ll~~L~~~~p~I~~~~~~~Le~~~~~~ 106 (1096)
..|++. ++.|++.. +.++..++.++..|+.+...- . +.... . .+.. +.+++.+...+...
T Consensus 13 ~~w~~~~~~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~---~-~~~~~---~---~~~~--~~~i~~L~~~L~~~---- 76 (450)
T 2jdq_A 13 MEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKE---P-NPPID---E---VIST--PGVVARFVEFLKRK---- 76 (450)
T ss_dssp ---------CHHHHHHHHSSCHHHHHHHHHHHHHHHHSS---S-SCCHH---H---HHTS--TTHHHHHHHHHTCT----
T ss_pred HhhccccccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC---C-CCcHH---H---HHHc--CCcHHHHHHHHCCC----
Confidence 367666 67777655 456778889999999874210 0 11110 0 1111 12333333333210
Q ss_pred HHhhhhhhhHHHhhHHHHHHHHHHHHHhccccCC--cchhcccCcHHHHHhhc--CChhHhhHHHHHHHHHcCCCCCCCC
Q 001344 107 LSEVGRQQLDVAKQHAATVTATLNAINAYAEWAP--LPDLAKYGIIHGCGFLL--SSPDFRLHACEFFKLVSPRKGPADA 182 (1096)
Q Consensus 107 ~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip--~~~i~~~~ll~~L~~ll--~~~~~R~~A~ecL~~i~sr~~~~~~ 182 (1096)
+ ...+...++.++.....--+ ...+.+.+.++.+..++ +++.+|..|+.||..+.... +
T Consensus 77 -------~------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~--~-- 139 (450)
T 2jdq_A 77 -------E------NCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDS--T-- 139 (450)
T ss_dssp -------T------CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC--H--
T ss_pred -------C------CHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCC--H--
Confidence 0 01133344444443333111 12334567888885444 45899999999999998643 1
Q ss_pred ChHHHH-HHHH-HHHHHHHHHHHHHhhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhhcccccccccHHHHHHHHHHhh
Q 001344 183 SASEFE-SAMH-DVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIAREDTILSMYLQQMLGYF 260 (1096)
Q Consensus 183 ~~~~f~-~~l~-~i~~~~~~~~~~~~~~~~~~~~~~dE~~y~f~k~l~e~L~~lg~~~~~~~~~~~~~l~~~L~~lL~~t 260 (1096)
... .++. .++..++..+. ++.+....+..+..+..+....-... ........++.++.+.
T Consensus 140 ---~~~~~~~~~~~i~~L~~~l~-------------~~~~~~v~~~a~~~L~~l~~~~~~~~--~~~~~~~~l~~L~~~l 201 (450)
T 2jdq_A 140 ---MCRDYVLDCNILPPLLQLFS-------------KQNRLTMTRNAVWALSNLCRGKSPPP--EFAKVSPCLNVLSWLL 201 (450)
T ss_dssp ---HHHHHHHHTTCHHHHHHHTT-------------SCCCHHHHHHHHHHHHHHHCCSSSCC--CGGGTGGGHHHHHHHT
T ss_pred ---HHHHHHHHCCCHHHHHHHhc-------------CCCCHHHHHHHHHHHHHHhCCCCCCC--CHHHHHHHHHHHHHHH
Confidence 111 1111 11111211111 11234567777777776653320100 0112356778888888
Q ss_pred ccchhHHHHHHHH
Q 001344 261 QHFKIALHFQSLL 273 (1096)
Q Consensus 261 ~hpsl~vs~~~l~ 273 (1096)
.+++..+...++.
T Consensus 202 ~~~~~~v~~~a~~ 214 (450)
T 2jdq_A 202 FVSDTDVLADACW 214 (450)
T ss_dssp TCCCHHHHHHHHH
T ss_pred ccCCHHHHHHHHH
Confidence 8887766655543
No 23
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=95.12 E-value=0.19 Score=53.68 Aligned_cols=186 Identities=12% Similarity=0.017 Sum_probs=109.4
Q ss_pred hHHHHHhHHHHHHH-HHHhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhhhh--cCC
Q 001344 407 DLAVMESMQSALEN-VVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLK--YYP 483 (1096)
Q Consensus 407 ~~~~~ea~~~~lea-v~~g~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll~~~~~dP~l~s~~~~~l~~l~~fl~--~~~ 483 (1096)
.|-..-+....+.. +++|+.+... . ..++ ..++..+.. .++ +.+++.++...+.+++++..-+. ...
T Consensus 29 ~w~eRk~al~~L~~~~~~~~~~i~~-~-~~~~---~~~~~~L~~----~l~-~D~n~~v~~~A~~al~~la~~l~~~~f~ 98 (249)
T 2qk1_A 29 KWKDRVEALEEFWDSVLSQTKKLKS-T-SQNY---SNLLGIYGH----IIQ-KDANIQAVALAAQSVELICDKLKTPGFS 98 (249)
T ss_dssp SHHHHHHHHHHHHHHTGGGCCCBCC-T-TCCC---HHHHHHHHH----HHH-HCSCHHHHHHHHHHHHHHHHHHCTTTSC
T ss_pred CHHHHHHHHHHHHHHHHhcCCcccc-C-cccH---HHHHHHHHH----Hhc-cCCCHHHHHHHHHHHHHHHHhccccccc
Confidence 36566666555666 6667655321 0 1122 122222222 221 67888899999999999998776 445
Q ss_pred -CchhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHHHHHHhccc-chhhHHHHHHHHHHHHHHcccccHHHHHH
Q 001344 484 -DAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDK-SILPHMKDIADTMAYLQREGRLLRGEHNL 561 (1096)
Q Consensus 484 -~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl~~~~~~-~l~P~l~~i~~~i~~l~~~~~L~~~e~~~ 561 (1096)
.+...++..+|+.+. + ....||.+|..++..++..... ...||++.+++.+-..+.++ ....|..
T Consensus 99 ~~y~~~llp~ll~~l~-------d----kk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k--~~~vk~~ 165 (249)
T 2qk1_A 99 KDYVSLVFTPLLDRTK-------E----KKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK--TPQIRME 165 (249)
T ss_dssp HHHHHHHHHHHHHGGG-------C----CCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS--SHHHHHH
T ss_pred HHHHHHHHHHHHHHHc-------C----CCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC--ChHHHHH
Confidence 678888888888763 1 2347899999999999998643 22244888877666666543 3556666
Q ss_pred HHHHHHHHhcCCCH--HHHHHHH-HHHhHHHHhhhch--HhHhhhhcCChHHHHHhccC
Q 001344 562 LGEAFLVMASAAGI--QQQQEVL-AWLLEPLSQQWMQ--LEWQNNYLSEPLGLVRLCSD 615 (1096)
Q Consensus 562 L~Eal~~i~~~~~~--~~q~~~l-~~ll~P~~~~W~~--~~~~~~~l~~~~~f~~~~~~ 615 (1096)
...++..++...+. ..=..++ ..+++.+.....+ ++.+..+......+...+|+
T Consensus 166 al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 166 CTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp HHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCH
Confidence 66666666542221 2222356 6666666554432 33443333333445555554
No 24
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=94.71 E-value=10 Score=45.78 Aligned_cols=166 Identities=8% Similarity=0.097 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHhhcccCCCChhhHHHHHhHHHHHHHHHHhhccCCCCCCCCChHHHH
Q 001344 362 SQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQL 441 (1096)
Q Consensus 362 ~~~Rk~~~~ilr~i~~~~P~~~~~~l~~~l~~~l~~~~~~~~~s~~~~~~ea~~~~leav~~g~~~~~~~~~~~~~~~~~ 441 (1096)
.+||+.+...+..++...+... .|....+-..+.... .+..-|....+.+-+ ...+ +. ..
T Consensus 399 ~e~r~~~v~~I~~la~k~~~~~-~~~v~~ll~lL~~~~-------~~v~~~~~~~l~~ii-~~~p---------~l--~~ 458 (618)
T 1w63_A 399 PEFKADCASGIFLAAEKYAPSK-RWHIDTIMRVLTTAG-------SYVRDDAVPNLIQLI-TNSV---------EM--HA 458 (618)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCH-HHHHHHHHHHHHHTG-------GGSCSSHHHHHHHHH-HHSC---------ST--HH
T ss_pred HHHHHHHHHHHHHHHHHhCccH-HHHHHHHHHHHHhcc-------chhHHHHHHHHHHHH-hcCh---------hH--HH
Confidence 3688888888888888776544 344444445554320 111112222222222 2111 11 12
Q ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhhhhc-----------CCCchhHHHHHHHHhhccCCCccCCCCch
Q 001344 442 SLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKY-----------YPDAVGGVISKLFELLTSLPFVFKDPSTN 510 (1096)
Q Consensus 442 ~l~~~l~~Ll~~ll~~~~~dP~l~s~~~~~l~~l~~fl~~-----------~~~~l~~VL~klf~~l~~~p~~~~~~~~~ 510 (1096)
. .+..++..+..-...++..+ ..+|++|.|+..+.. .|..+..+|..+++...
T Consensus 459 ~---~v~~L~~~l~~~~~~~~~~~-~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~------------ 522 (618)
T 1w63_A 459 Y---TVQRLYKAILGDYSQQPLVQ-VAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNM------------ 522 (618)
T ss_dssp H---HHHHHHHHHHHCCSCSHHHH-HHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTT------------
T ss_pred H---HHHHHHHHHhcccccHHHHH-HHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccC------------
Confidence 1 24445554443223455554 689999999987754 22234445554422110
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHcccccHHHHHHHHHHHH
Q 001344 511 SARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFL 567 (1096)
Q Consensus 511 ~~k~vR~~A~~~f~rl~~~~~~~l~P~l~~i~~~i~~l~~~~~L~~~e~~~L~Eal~ 567 (1096)
....+|..+-+++.|+....|.. .+.+..+ +.....+.++.-++|...|-.++
T Consensus 523 ~~~~vr~~~lta~~Kl~~~~~~~-~~~l~~~---L~~~~~~~d~evrdRA~~y~~ll 575 (618)
T 1w63_A 523 STSVTRGYALTAIMKLSTRFTCT-VNRIKKV---VSIYGSSIDVELQQRAVEYNALF 575 (618)
T ss_dssp CCHHHHHHHHHHHHHHHTTCSSC-HHHHHHH---HHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCcch-HHHHHHH---HHHhcCCCCHHHHHHHHHHHHHH
Confidence 12268999999999999988743 3444443 33322333455556666664443
No 25
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=94.36 E-value=0.61 Score=49.10 Aligned_cols=158 Identities=10% Similarity=0.088 Sum_probs=95.3
Q ss_pred hhHHHHHhHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhhhhc-CCC
Q 001344 406 QDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKY-YPD 484 (1096)
Q Consensus 406 ~~~~~~ea~~~~leav~~g~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll~~~~~dP~l~s~~~~~l~~l~~fl~~-~~~ 484 (1096)
..|-...+....+..+++++.+.. ..++ ..+.+.+..+ +. +.+++.++...+.+++.+..-+.. ...
T Consensus 27 ~~w~~R~~a~~~L~~l~~~~~~~~----~~~~---~~i~~~L~~~----l~-kd~~~~V~~~a~~~l~~la~~l~~~~~~ 94 (242)
T 2qk2_A 27 KKWTLRKESLEVLEKLLTDHPKLE----NGEY---GALVSALKKV----IT-KDSNVVLVAMAGKCLALLAKGLAKRFSN 94 (242)
T ss_dssp SSHHHHHHHHHHHHHHHHHCSSBC----CCCC---HHHHHHHHHH----HH-HCSCHHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred CCHHHHHHHHHHHHHHHccCCCCC----CCCH---HHHHHHHHHH----hc-cCCCHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 347777777788888888754421 1122 2233333332 21 367888999989988888865542 223
Q ss_pred chhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHcccccHHHHHHHHH
Q 001344 485 AVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGE 564 (1096)
Q Consensus 485 ~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl~~~~~~~l~P~l~~i~~~i~~l~~~~~L~~~e~~~L~E 564 (1096)
++..++..+++.+. + ....||.+|+.++..++...+ ++.++..+...+..+ +..-|....+
T Consensus 95 ~~~~ilp~ll~~l~-------d----~~~~vr~~a~~aL~~~~~~~~------~~~ll~~l~~~l~~~--~~~vr~~~l~ 155 (242)
T 2qk2_A 95 YASACVPSLLEKFK-------E----KKPNVVTALREAIDAIYASTS------LEAQQESIVESLSNK--NPSVKSETAL 155 (242)
T ss_dssp HHHHHHHHHHHGGG-------C----CCHHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHTTCS--CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-------C----CCHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCC--ChHHHHHHHH
Confidence 55666667766653 1 234799999999999998643 334444444333332 4556667777
Q ss_pred HHHHHhcCCCHHH-HHHHHHHHhHHHHhhhc
Q 001344 565 AFLVMASAAGIQQ-QQEVLAWLLEPLSQQWM 594 (1096)
Q Consensus 565 al~~i~~~~~~~~-q~~~l~~ll~P~~~~W~ 594 (1096)
++..+....+++. -..++..+++.+.....
T Consensus 156 ~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~ 186 (242)
T 2qk2_A 156 FIARALTRTQPTALNKKLLKLLTTSLVKTLN 186 (242)
T ss_dssp HHHHHHTTCCGGGCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCccHHHHHHHHHHHHHHhc
Confidence 7777655444432 34566777777766553
No 26
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=94.16 E-value=12 Score=47.84 Aligned_cols=74 Identities=9% Similarity=0.087 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHhccccCCcchhcccCcHHHHHhhcCChhHhhHHHHHHHHHcCCCCCCCCChHHHHHHHHHHHH
Q 001344 121 HAATVTATLNAINAYAEWAPLPDLAKYGIIHGCGFLLSSPDFRLHACEFFKLVSPRKGPADASASEFESAMHDVFQ 196 (1096)
Q Consensus 121 ~~~~v~~aL~tl~~yl~Wip~~~i~~~~ll~~L~~ll~~~~~R~~A~ecL~~i~sr~~~~~~~~~~f~~~l~~i~~ 196 (1096)
+..+...++.+++.|.+|+....-.-..+++.+...+.++.+|..||.+|..++..- + +.-.+.++.++..++.
T Consensus 502 ~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~~~V~~~A~~al~~l~~~~-~-~~l~p~~~~il~~l~~ 575 (963)
T 2x19_B 502 NVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGNPELSVSSVSTLKKICREC-K-YDLPPYAANIVAVSQD 575 (963)
T ss_dssp SHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTCGGGHHHHHHHHHHHHHHT-G-GGCTTTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH-H-HHHHhhHHHHHHHHHH
Confidence 345888999999999999764321223577777544566999999999999998532 1 1223455555555543
No 27
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=92.92 E-value=9.5 Score=43.39 Aligned_cols=133 Identities=9% Similarity=0.144 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhcc---ccCCcchhccc-CcHHHHHhh--cC-ChhHhhHHHHHHHHHcCCCCCCCCChHHHHHHHH-HHH
Q 001344 124 TVTATLNAINAYA---EWAPLPDLAKY-GIIHGCGFL--LS-SPDFRLHACEFFKLVSPRKGPADASASEFESAMH-DVF 195 (1096)
Q Consensus 124 ~v~~aL~tl~~yl---~Wip~~~i~~~-~ll~~L~~l--l~-~~~~R~~A~ecL~~i~sr~~~~~~~~~~f~~~l~-~i~ 195 (1096)
+...|+.++...+ ...+...+.+. ++++.+..+ .+ ++.+|..|+.+|..+.... + +.-..++. .+.
T Consensus 36 ~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~--~----~~~~~~~~~~~i 109 (450)
T 2jdq_A 36 QQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGN--S----LQTRIVIQAGAV 109 (450)
T ss_dssp HHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC--H----HHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC--H----HHHHHHHhCCCH
Confidence 4555666665554 23455556666 888887433 23 5799999999999998744 1 11111110 111
Q ss_pred HHHHHHHHHHhhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhhcccccccccH-HHHHHHHHHhhcc-chhHHHHHHHH
Q 001344 196 QILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIAREDTIL-SMYLQQMLGYFQH-FKIALHFQSLL 273 (1096)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~dE~~y~f~k~l~e~L~~lg~~~~~~~~~~~~~l-~~~L~~lL~~t~h-psl~vs~~~l~ 273 (1096)
..++..++ + .+....+.-+..|..++......- ...+ ...++.++.++.+ ++..+...++.
T Consensus 110 ~~L~~lL~--------~------~~~~vr~~a~~~L~~l~~~~~~~~---~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~ 172 (450)
T 2jdq_A 110 PIFIELLS--------S------EFEDVQEQAVWALGNIAGDSTMCR---DYVLDCNILPPLLQLFSKQNRLTMTRNAVW 172 (450)
T ss_dssp HHHHHHTT--------C------SCHHHHHHHHHHHHHHHTTCHHHH---HHHHHTTCHHHHHHHTTSCCCHHHHHHHHH
T ss_pred HHHHHHHc--------C------CCHHHHHHHHHHHHHHccCCHHHH---HHHHHCCCHHHHHHHhcCCCCHHHHHHHHH
Confidence 11111111 1 123455666666666543221100 0000 1346677777775 67777777766
Q ss_pred HHHHHH
Q 001344 274 FWLALM 279 (1096)
Q Consensus 274 ~W~~lL 279 (1096)
.+..+.
T Consensus 173 ~L~~l~ 178 (450)
T 2jdq_A 173 ALSNLC 178 (450)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 554444
No 28
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=92.24 E-value=2.7 Score=44.54 Aligned_cols=180 Identities=12% Similarity=0.125 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHH-HHccCchH-----HHHHHHHHHHHHH-hhcccCCCChhhHHHHHhHHHHHHHHHHhhc-cCCCCCC
Q 001344 362 SQYRSRLLELVKF-VASNKPLV-----AGVKVSERVMAII-NSLLISTMPAQDLAVMESMQSALENVVSAVF-DGSNQFG 433 (1096)
Q Consensus 362 ~~~Rk~~~~ilr~-i~~~~P~~-----~~~~l~~~l~~~l-~~~~~~~~~s~~~~~~ea~~~~leav~~g~~-~~~~~~~ 433 (1096)
|.-|+...+-+.. +..-.|.. -+.-+.+-+...+ .+. ......+....++.+.+++- ....
T Consensus 30 w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~--------n~~v~~~A~~al~~la~~l~~~~f~--- 98 (249)
T 2qk1_A 30 WKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDA--------NIQAVALAAQSVELICDKLKTPGFS--- 98 (249)
T ss_dssp HHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCS--------CHHHHHHHHHHHHHHHHHHCTTTSC---
T ss_pred HHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCC--------CHHHHHHHHHHHHHHHHhccccccc---
Confidence 7778777766666 54222211 1122344444444 221 13335566667777777654 2211
Q ss_pred CCChHHHHHHHHHHHHHHHHHH-hcCCCCchHHHHHHHHHHhhhhhhhcCC--CchhHHHHHHHHhhccCCCccCCCCch
Q 001344 434 GANSEVQLSLSRIFEGLLRQLL-SLKWTEPPLVVALGHYLDALGPFLKYYP--DAVGGVISKLFELLTSLPFVFKDPSTN 510 (1096)
Q Consensus 434 ~~~~~~~~~l~~~l~~Ll~~ll-~~~~~dP~l~s~~~~~l~~l~~fl~~~~--~~l~~VL~klf~~l~~~p~~~~~~~~~ 510 (1096)
. + +...++..++ .++.+.+.++......+.++.....-.. .++..+++.+++.|..
T Consensus 99 -----~-~----y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~----------- 157 (249)
T 2qk1_A 99 -----K-D----YVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKH----------- 157 (249)
T ss_dssp -----H-H----HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTC-----------
T ss_pred -----H-H----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcC-----------
Confidence 0 1 2333444444 3477778888877777766665432111 2377899999888741
Q ss_pred HHHHHHHHHHHHHHHHHHhcc---cchhhHH-HHHHHHHHHHHHcccccHHHHHHHHHHHHHHhcCCCH
Q 001344 511 SARHARLQICTSFIRIAKTSD---KSILPHM-KDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGI 575 (1096)
Q Consensus 511 ~~k~vR~~A~~~f~rl~~~~~---~~l~P~l-~~i~~~i~~l~~~~~L~~~e~~~L~Eal~~i~~~~~~ 575 (1096)
.+..+|..++..+.+++...+ ..+.||+ +.++..+..++... ...-|..=+|+++.+....|.
T Consensus 158 k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~--~~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 158 KTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDT--QPAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp SSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHHCS
T ss_pred CChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhCH
Confidence 133799999999999999987 5688999 89988887777542 344566777888887654443
No 29
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=89.37 E-value=44 Score=40.28 Aligned_cols=90 Identities=11% Similarity=0.132 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHhhhhhhhcCCCchh-HHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHHHHHHhcccchhhHHHHH
Q 001344 463 PLVVALGHYLDALGPFLKYYPDAVG-GVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDI 541 (1096)
Q Consensus 463 ~l~s~~~~~l~~l~~fl~~~~~~l~-~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl~~~~~~~l~P~l~~i 541 (1096)
.+....+|++|-|+..+...+...+ .+++.+.+.+. . ....+|.++-+++.|+....|. +.+.+..+
T Consensus 495 ~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~---~--------~~~~v~~~~Lta~~Kl~~~~p~-~~~~i~~~ 562 (621)
T 2vgl_A 495 NLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFH---L--------CSVPTRALLLSTYIKFVNLFPE-VKATIQDV 562 (621)
T ss_dssp HHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHT---T--------SCHHHHHHHHHHHHHHHHHCGG-GHHHHHHH
T ss_pred HHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhc---c--------CCHHHHHHHHHHHHHHHHHChH-HHHHHHHH
Confidence 3445667999999998887654333 45665544432 1 1226899999999999988754 33333333
Q ss_pred HHHHHHHHH--cccccHHHHHHHHHHHH
Q 001344 542 ADTMAYLQR--EGRLLRGEHNLLGEAFL 567 (1096)
Q Consensus 542 ~~~i~~l~~--~~~L~~~e~~~L~Eal~ 567 (1096)
++.... ..++.-++|...|-.++
T Consensus 563 ---l~~~~~~~~~d~evrdRA~~y~~Ll 587 (621)
T 2vgl_A 563 ---LRSDSQLKNADVELQQRAVEYLRLS 587 (621)
T ss_dssp ---HSSHHHHSCSSHHHHHHHHHHHHHH
T ss_pred ---HHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 222222 33445556666665554
No 30
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=87.87 E-value=16 Score=42.87 Aligned_cols=54 Identities=9% Similarity=0.193 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhccccC---CcchhcccCcHHHHHhhc--CC-hhHhhHHHHHHHHHcCCC
Q 001344 124 TVTATLNAINAYAEWA---PLPDLAKYGIIHGCGFLL--SS-PDFRLHACEFFKLVSPRK 177 (1096)
Q Consensus 124 ~v~~aL~tl~~yl~Wi---p~~~i~~~~ll~~L~~ll--~~-~~~R~~A~ecL~~i~sr~ 177 (1096)
+...|+.++...++-- +...+...++++.|..++ ++ +.+|..|+.||..+....
T Consensus 90 ~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~ 149 (528)
T 4b8j_A 90 LQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGT 149 (528)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC
Confidence 4455566665555432 345667788999885333 33 799999999999998743
No 31
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=86.39 E-value=10 Score=45.82 Aligned_cols=115 Identities=11% Similarity=0.061 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhhhhcCCCchh--HHHHHHHHhhccCCCccCCCCchHHHHHHHHHH
Q 001344 443 LSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVG--GVISKLFELLTSLPFVFKDPSTNSARHARLQIC 520 (1096)
Q Consensus 443 l~~~l~~Ll~~ll~~~~~dP~l~s~~~~~l~~l~~fl~~~~~~l~--~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~ 520 (1096)
+.+.+..-+..++..+.++|-+|+..+.++. ++.+..|+.++ ..++++.+.|. + ++ -.|+..|.
T Consensus 143 ~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~---kl~~~~p~~~~~~~~~~~l~~lL~---d--~d------~~V~~~a~ 208 (621)
T 2vgl_A 143 MAEAFAGEIPKILVAGDTMDSVKQSAALCLL---RLYRTSPDLVPMGDWTSRVVHLLN---D--QH------LGVVTAAT 208 (621)
T ss_dssp HHHHHTTHHHHHHHCSSSCHHHHHHHHHHHH---HHHHHCGGGCCCCSCHHHHHHHTT---C--SC------HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH---HHHHhChhhcCchhHHHHHHHHhC---C--CC------ccHHHHHH
Confidence 3444555555555457899999998777444 44456677666 67777777663 1 11 26889999
Q ss_pred HHHHHHHHhcccchhhHHHHHHHHHHHHHHcccc-----------cHHHHHHHHHHHHHHhc
Q 001344 521 TSFIRIAKTSDKSILPHMKDIADTMAYLQREGRL-----------LRGEHNLLGEAFLVMAS 571 (1096)
Q Consensus 521 ~~f~rl~~~~~~~l~P~l~~i~~~i~~l~~~~~L-----------~~~e~~~L~Eal~~i~~ 571 (1096)
.+|..++...+....|++..+.+.+.++...+.. ++--++.+.+.+..+..
T Consensus 209 ~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~ 270 (621)
T 2vgl_A 209 SLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPP 270 (621)
T ss_dssp HHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSS
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCC
Confidence 9999999999888888888888888877765434 34556666666665553
No 32
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=83.53 E-value=74 Score=37.07 Aligned_cols=134 Identities=10% Similarity=0.066 Sum_probs=71.6
Q ss_pred HHHHHHHHHHhccccC---CcchhcccCcHHHHHhhcC---ChhHhhHHHHHHHHHcCCCCCCCCChHHHH-HHHHHHHH
Q 001344 124 TVTATLNAINAYAEWA---PLPDLAKYGIIHGCGFLLS---SPDFRLHACEFFKLVSPRKGPADASASEFE-SAMHDVFQ 196 (1096)
Q Consensus 124 ~v~~aL~tl~~yl~Wi---p~~~i~~~~ll~~L~~ll~---~~~~R~~A~ecL~~i~sr~~~~~~~~~~f~-~~l~~i~~ 196 (1096)
+...|+.++...++-- +...+.+.++++.|..++. ++.+|..|+.||..+.... ++......+ ..+..
T Consensus 103 ~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~--~~~~~~~~~~g~i~~--- 177 (530)
T 1wa5_B 103 EQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGT--SAQTKVVVDADAVPL--- 177 (530)
T ss_dssp HHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC--HHHHHHHHHTTCHHH---
T ss_pred HHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC--HHHHHHHHHCCCHHH---
Confidence 5566777777776542 3355677889998854443 5789999999999998643 111000110 11111
Q ss_pred HHHHHHHHHhhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhhcccccccccHHHHHHHHHHhhccchhHHHHHHHHHHH
Q 001344 197 ILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIAREDTILSMYLQQMLGYFQHFKIALHFQSLLFWL 276 (1096)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~dE~~y~f~k~l~e~L~~lg~~~~~~~~~~~~~l~~~L~~lL~~t~hpsl~vs~~~l~~W~ 276 (1096)
++..+.. .+....+..+..|..+.......-. .-.-...++.++.++.+++..+...++....
T Consensus 178 -Lv~lL~~--------------~~~~vr~~A~~aL~~l~~~~~~~~~--~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~ 240 (530)
T 1wa5_B 178 -FIQLLYT--------------GSVEVKEQAIWALGNVAGDSTDYRD--YVLQCNAMEPILGLFNSNKPSLIRTATWTLS 240 (530)
T ss_dssp -HHHHHHH--------------CCHHHHHHHHHHHHHHHTTCHHHHH--HHHHTTCHHHHHHGGGSCCHHHHHHHHHHHH
T ss_pred -HHHHHcC--------------CCHHHHHHHHHHHHHHhCCCccchH--HHHHcCcHHHHHHHhccCCHHHHHHHHHHHH
Confidence 2222221 1234556666666655432110000 0001135677788888877777666655444
Q ss_pred HHH
Q 001344 277 ALM 279 (1096)
Q Consensus 277 ~lL 279 (1096)
.+.
T Consensus 241 ~L~ 243 (530)
T 1wa5_B 241 NLC 243 (530)
T ss_dssp HHH
T ss_pred HHh
Confidence 333
No 33
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=83.53 E-value=24 Score=35.31 Aligned_cols=166 Identities=12% Similarity=0.148 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHhhcccCCCChhhHHHHHhHHHHHHHHHHhhccCCCCCCCCChHHH
Q 001344 361 FSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQ 440 (1096)
Q Consensus 361 f~~~Rk~~~~ilr~i~~~~P~~~~~~l~~~l~~~l~~~~~~~~~s~~~~~~ea~~~~leav~~g~~~~~~~~~~~~~~~~ 440 (1096)
.|..+|....++-.+++-.|+...+.+...+.-+-.+. ...--......++-+.. ..
T Consensus 45 lwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksE--------aIpltqeIa~a~G~la~---------------i~ 101 (253)
T 2db0_A 45 LWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSE--------AIPLTQEIAKAFGQMAK---------------EK 101 (253)
T ss_dssp CHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC--------SHHHHHHHHHHHHHHHH---------------HC
T ss_pred HHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcc--------cCchHHHHHHHHhHHHH---------------hC
Confidence 49999999999999999999887776555544332221 11111112222332222 01
Q ss_pred HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhhhhcCCCchhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHH
Q 001344 441 LSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQIC 520 (1096)
Q Consensus 441 ~~l~~~l~~Ll~~ll~~~~~dP~l~s~~~~~l~~l~~fl~~~~~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~ 520 (1096)
+.++..+..++ .-++...||.++-...|. +.+..+.+|..++.|...++..+++ ++ +.=|..|-
T Consensus 102 Pe~v~~vVp~l--fanyrigd~kikIn~~ya---LeeIaranP~l~~~v~rdi~smlts-----kd------~~Dkl~aL 165 (253)
T 2db0_A 102 PELVKSMIPVL--FANYRIGDEKTKINVSYA---LEEIAKANPMLMASIVRDFMSMLSS-----KN------REDKLTAL 165 (253)
T ss_dssp HHHHHHHHHHH--HHHSCCCSHHHHHHHHHH---HHHHHHHCHHHHHHHHHHHHHHTSC-----SS------HHHHHHHH
T ss_pred HHHHHhhHHHH--HHHHhcCCccceecHHHH---HHHHHHhChHHHHHHHHHHHHHhcC-----CC------hHHHHHHH
Confidence 33333322222 236788899999998884 4556788999999999999887753 21 12255666
Q ss_pred HHHHHHHHhcccchhhHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHhc
Q 001344 521 TSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMAS 571 (1096)
Q Consensus 521 ~~f~rl~~~~~~~l~P~l~~i~~~i~~l~~~~~L~~~e~~~L~Eal~~i~~ 571 (1096)
.-+--++..+++...||+..+..-+- +=...-+..--|+|+.++-
T Consensus 166 nFi~alGen~~~yv~PfLprL~aLL~------D~deiVRaSaVEtL~~lA~ 210 (253)
T 2db0_A 166 NFIEAMGENSFKYVNPFLPRIINLLH------DGDEIVRASAVEALVHLAT 210 (253)
T ss_dssp HHHHTCCTTTHHHHGGGHHHHHGGGG------CSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhccCccccCcchHHHHHHHc------CcchhhhHHHHHHHHHHHH
Confidence 66667777788888899887733221 1223445567777777765
No 34
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=82.95 E-value=12 Score=47.84 Aligned_cols=129 Identities=10% Similarity=0.017 Sum_probs=87.3
Q ss_pred CCCCchHHHHHHHHHHhhhhhhh------------cCCCchhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHHH
Q 001344 458 KWTEPPLVVALGHYLDALGPFLK------------YYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIR 525 (1096)
Q Consensus 458 ~~~dP~l~s~~~~~l~~l~~fl~------------~~~~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~r 525 (1096)
...++.++...++.+..|..... .-.++++++++++|..+... + ...........+..++.+
T Consensus 506 ~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~-~-----~~~~~~~~~e~l~~al~~ 579 (960)
T 1wa5_C 506 QTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKH-G-----SSPEKLAENEFLMRSIFR 579 (960)
T ss_dssp TCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTT-C-----CCHHHHTSCHHHHHHHHH
T ss_pred CCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhc-c-----CCCCcccccHHHHHHHHH
Confidence 45578888888887776654321 12467888899988877521 0 000001123478899999
Q ss_pred HHHhcccchhhHHHHHHHHHHHHHHcc--c-ccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhHHHHhh
Q 001344 526 IAKTSDKSILPHMKDIADTMAYLQREG--R-LLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQ 592 (1096)
Q Consensus 526 l~~~~~~~l~P~l~~i~~~i~~l~~~~--~-L~~~e~~~L~Eal~~i~~~~~~~~q~~~l~~ll~P~~~~ 592 (1096)
++...++.+.||++.+...+...+..- . =...-+..+.|++++++...+++....+.+.+++++...
T Consensus 580 vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~i 649 (960)
T 1wa5_C 580 VLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTV 649 (960)
T ss_dssp HHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 999999999999999987777666541 1 123334568999999987767777777888888776654
No 35
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=82.79 E-value=4.9 Score=41.95 Aligned_cols=144 Identities=10% Similarity=0.113 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHhhcccCCCChhhHHHHHhHHHHHHHHHHhhccCCCCCCCCChHHHHH
Q 001344 363 QYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLS 442 (1096)
Q Consensus 363 ~~Rk~~~~ilr~i~~~~P~~~~~~l~~~l~~~l~~~~~~~~~s~~~~~~ea~~~~leav~~g~~~~~~~~~~~~~~~~~~ 442 (1096)
+.|.....++..++..-.....+++...+..++... .+......+++...+.+++..+ .. ..
T Consensus 72 ~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l-----~d~~~~vr~~a~~aL~~~~~~~----------~~---~~ 133 (242)
T 2qk2_A 72 VLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKF-----KEKKPNVVTALREAIDAIYAST----------SL---EA 133 (242)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGG-----GCCCHHHHHHHHHHHHHHHTTS----------CH---HH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHcC----------CH---HH
Confidence 455555555555554222233455555555555432 1112345667777777765521 01 22
Q ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhhh-h--cCCCchhHHHHHHHHhhccCCCccCCCCchHHHHHHHHH
Q 001344 443 LSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFL-K--YYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQI 519 (1096)
Q Consensus 443 l~~~l~~Ll~~ll~~~~~dP~l~s~~~~~l~~l~~fl-~--~~~~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A 519 (1096)
+ ++.++. .++.++|.++...+..++.+..-. . ....+++.++..+++.+. |....||..|
T Consensus 134 l---l~~l~~---~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~-----------D~~~~VR~~A 196 (242)
T 2qk2_A 134 Q---QESIVE---SLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLN-----------EPDPTVRDSS 196 (242)
T ss_dssp H---HHHHHH---HTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHT-----------SSCHHHHHHH
T ss_pred H---HHHHHH---HHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhc-----------CCChHHHHHH
Confidence 2 222222 236678888888777666532111 1 112345666666666652 2345799999
Q ss_pred HHHHHHHHHhcccc-hhhHHHHH
Q 001344 520 CTSFIRIAKTSDKS-ILPHMKDI 541 (1096)
Q Consensus 520 ~~~f~rl~~~~~~~-l~P~l~~i 541 (1096)
..++..+++..+.. +.|+++.+
T Consensus 197 ~~~l~~l~~~vg~~~~~~~l~~L 219 (242)
T 2qk2_A 197 AEALGTLIKLMGDKAVTPLLADV 219 (242)
T ss_dssp HHHHHHHHHHHCHHHHGGGGTTS
T ss_pred HHHHHHHHHHcCHHHHHHHHHhc
Confidence 99999999998765 66777655
No 36
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=82.52 E-value=1.2e+02 Score=38.83 Aligned_cols=140 Identities=10% Similarity=0.076 Sum_probs=74.1
Q ss_pred hhHHHHHHHHHHHHHHHhhcccchhhHHHHHHHhh---cCChhHHHHHHHHHHhhhhhhcccccCchHHHHHHHHHHHHh
Q 001344 10 EWALKSQTAALVAEIVRREGINLWQELFPSLVSLS---SKGPIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGLTQ 86 (1096)
Q Consensus 10 ~~~irnkla~vlveIvkrewp~~Wp~fl~~L~~l~---~~~~~~~El~L~iL~~L~EDv~~~~edl~~~Rr~~ll~~L~~ 86 (1096)
.+-.+..++.++..+.....-.--+-+.+-|-+.. ..+...+|-++..+..++|.+.. +. . ..
T Consensus 426 ~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~---~~--e---------~~ 491 (1049)
T 3m1i_C 426 TIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSE---DT--E---------KR 491 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCH---HH--H---------HH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCc---hh--h---------HH
Confidence 33455566677776664332221222222222222 23456789999999988865432 00 0 01
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHHHHHHHHHhccccCCcchhcccCcHHHHHhhcC--ChhHhh
Q 001344 87 SLPEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAKYGIIHGCGFLLS--SPDFRL 164 (1096)
Q Consensus 87 ~~p~I~~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~~~~ll~~L~~ll~--~~~~R~ 164 (1096)
.+|.|++++..+.+. ..+ . -.+..+...+..++++|.+|.....-.=..+++.+...+. ++.+|.
T Consensus 492 ~l~~v~~~l~~l~~~---------~~~-~---~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~ 558 (1049)
T 3m1i_C 492 FVVTVIKDLLDLTVK---------KRG-K---DNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQD 558 (1049)
T ss_dssp HHHHHHHHHHHHTTS---------SCS-H---HHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHH
T ss_pred HHHHHHHHHHHHHhh---------hcc-c---cchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 145555554442210 000 0 0123344468899999999975432111124444432233 489999
Q ss_pred HHHHHHHHHcCC
Q 001344 165 HACEFFKLVSPR 176 (1096)
Q Consensus 165 ~A~ecL~~i~sr 176 (1096)
.||.+|.-++..
T Consensus 559 ~A~~al~~l~~~ 570 (1049)
T 3m1i_C 559 MACDTFIKIVQK 570 (1049)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998864
No 37
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=82.34 E-value=81 Score=36.69 Aligned_cols=132 Identities=13% Similarity=0.052 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhccccCC--cchhcccCcHHHHHhhc--CChhHhhHHHHHHHHHcCCCCCCCCChHHHHHHHHHHHHHHH
Q 001344 124 TVTATLNAINAYAEWAP--LPDLAKYGIIHGCGFLL--SSPDFRLHACEFFKLVSPRKGPADASASEFESAMHDVFQILM 199 (1096)
Q Consensus 124 ~v~~aL~tl~~yl~Wip--~~~i~~~~ll~~L~~ll--~~~~~R~~A~ecL~~i~sr~~~~~~~~~~f~~~l~~i~~~~~ 199 (1096)
+...|+.+|+....--+ ...+...+.++.|..++ .++.+|..|+.||..+...+.+. ...... ..++..++
T Consensus 189 vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~----~~~l~~L~ 263 (530)
T 1wa5_B 189 VKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ-PDWSVV----SQALPTLA 263 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSC-CCHHHH----GGGHHHHH
T ss_pred HHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCC-CcHHHH----HhHHHHHH
Confidence 45555555555543211 12345567888875333 45889999999999998654111 111111 12222222
Q ss_pred HHHHHHhhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhhcccccccccH-HHHHHHHHHhhccchhHHHHHHHHHHHH
Q 001344 200 KVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIAREDTIL-SMYLQQMLGYFQHFKIALHFQSLLFWLA 277 (1096)
Q Consensus 200 ~~~~~~~~~~~~~~~~~dE~~y~f~k~l~e~L~~lg~~~~~~~~~~~~~l-~~~L~~lL~~t~hpsl~vs~~~l~~W~~ 277 (1096)
.++. ++ +.......+..|..+....-.... ..+ ...++.++.++.|++..+...++.....
T Consensus 264 ~lL~--------~~------d~~v~~~a~~~L~~L~~~~~~~~~---~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~ 325 (530)
T 1wa5_B 264 KLIY--------SM------DTETLVDACWAISYLSDGPQEAIQ---AVIDVRIPKRLVELLSHESTLVQTPALRAVGN 325 (530)
T ss_dssp HHTT--------CC------CHHHHHHHHHHHHHHHSSCHHHHH---HHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHc--------CC------CHHHHHHHHHHHHHHhCCCHHHHH---HHHhcCcHHHHHHHHCCCChhhHHHHHHHHHH
Confidence 2221 11 234666667776666532111000 011 1456788888899888777777654433
No 38
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=66.79 E-value=1.9e+02 Score=33.39 Aligned_cols=103 Identities=5% Similarity=0.013 Sum_probs=55.3
Q ss_pred hcCChhHhhHHHHHHHHHcCCCCCCCCChHHH-H-HHHHHHHHHHHHHHHHHhhhcCCCCCCCChhhhHHHHHHHHHHHH
Q 001344 156 LLSSPDFRLHACEFFKLVSPRKGPADASASEF-E-SAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVS 233 (1096)
Q Consensus 156 ll~~~~~R~~A~ecL~~i~sr~~~~~~~~~~f-~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~dE~~y~f~k~l~e~L~~ 233 (1096)
..+++..|..|+.+|..+++.... .....+ + ..+..+ +..+. ++ .+.......+..|..
T Consensus 84 ~s~~~~~~~~A~~~L~~l~s~~~~--~~~~~~~~~g~v~~L----v~lL~--------~~-----~~~~v~~~A~~~L~~ 144 (528)
T 4b8j_A 84 YSDDNNLQLEATTQFRKLLSIERS--PPIEEVIQSGVVPRF----VQFLT--------RE-----DFPQLQFEAAWALTN 144 (528)
T ss_dssp TSSCHHHHHHHHHHHHHHHTCSSS--CCHHHHHHTTCHHHH----HHHHT--------CT-----TCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCC--chHHHHHHCCCHHHH----HHHhC--------CC-----CCHHHHHHHHHHHHH
Confidence 345689999999999999887631 222211 1 122222 22121 11 112345555556655
Q ss_pred hhhhhhcccccccccH-HHHHHHHHHhhccchhHHHHHHHHHHHHHHH
Q 001344 234 LGTSNLHCIAREDTIL-SMYLQQMLGYFQHFKIALHFQSLLFWLALMR 280 (1096)
Q Consensus 234 lg~~~~~~~~~~~~~l-~~~L~~lL~~t~hpsl~vs~~~l~~W~~lL~ 280 (1096)
++....... ...+ ...++.++.++.+++..+...++..+..+..
T Consensus 145 l~~~~~~~~---~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~ 189 (528)
T 4b8j_A 145 IASGTSENT---KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAG 189 (528)
T ss_dssp HHTSCHHHH---HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HhCCCHHHH---HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhC
Confidence 543211100 0001 1367888888899888888887766555543
No 39
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=60.81 E-value=3.3e+02 Score=34.19 Aligned_cols=53 Identities=9% Similarity=-0.008 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHhc
Q 001344 514 HARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMAS 571 (1096)
Q Consensus 514 ~vR~~A~~~f~rl~~~~~~~l~P~l~~i~~~i~~l~~~~~L~~~e~~~L~Eal~~i~~ 571 (1096)
.+.+.||..+-++++.+.+.+.||++.+.+.+-..+.+ .+...+.+.+..++.
T Consensus 708 ~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~-----~~~~~~l~l~~~~i~ 760 (971)
T 2x1g_F 708 DVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQT-----RCCAPTLEISKTAIV 760 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC-------CCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhc-----CCchHHHHHHHHHHH
Confidence 68889999999999999999999999997666533332 222345566666665
No 40
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=57.64 E-value=2.4e+02 Score=31.55 Aligned_cols=102 Identities=20% Similarity=0.169 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhhhhcCCCchhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHH
Q 001344 442 SLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICT 521 (1096)
Q Consensus 442 ~l~~~l~~Ll~~ll~~~~~dP~l~s~~~~~l~~l~~fl~~~~~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~ 521 (1096)
.+..--..++..|+..=..+...-..++-+++.++...+.+|.++..|++.+...-...|.. +..-.++.||+..=.
T Consensus 218 ~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~~~rIl~aL~~l~~n~p~t---~sk~qvkSv~KtLR~ 294 (386)
T 3o2t_A 218 VLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYETLHANLPPT---LAKSQVSSVRKNLKL 294 (386)
T ss_dssp HHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHCC-------CGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhhcCCCCcc---HHHHHHHHHHHHHHH
Confidence 34444556666666532221111123345788999999999999999999875532223321 124478899999999
Q ss_pred HHHHHHHhcccchhhHHHHHHHHHHHH
Q 001344 522 SFIRIAKTSDKSILPHMKDIADTMAYL 548 (1096)
Q Consensus 522 ~f~rl~~~~~~~l~P~l~~i~~~i~~l 548 (1096)
.|+.+-+. |.. .||-..|.+.+.++
T Consensus 295 ~Ll~lLK~-p~s-~~~~~~I~~~L~~L 319 (386)
T 3o2t_A 295 HLLSVLKH-PAS-LEFQAQITTLLVDL 319 (386)
T ss_dssp HHHHHHTS-GGG-GGGHHHHHHHHHHT
T ss_pred HHHHHHcC-CCc-hhhHHHHHHHHHHH
Confidence 99998874 333 37777776666543
No 41
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=57.63 E-value=71 Score=40.75 Aligned_cols=72 Identities=13% Similarity=0.057 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHhHHHHh
Q 001344 513 RHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMAS-AAGIQQQQEVLAWLLEPLSQ 591 (1096)
Q Consensus 513 k~vR~~A~~~f~rl~~~~~~~l~P~l~~i~~~i~~l~~~~~L~~~e~~~L~Eal~~i~~-~~~~~~q~~~l~~ll~P~~~ 591 (1096)
..+|.++|..|.|+....+..+.|++..+++.+- . .++..|..-+...++.++. +.+. -..+|..++.|+.+
T Consensus 715 ~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll---~--~~~~~e~~~fL~l~~qli~~f~~~--~~~~l~~ll~~l~~ 787 (980)
T 3ibv_A 715 EDIRGAVRFTSGRIINVVGPDMLPKVPQLISILL---N--SIDMNELVDVLSFISQLIHIYKDN--MMEITNRMLPTLLM 787 (980)
T ss_dssp HHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHH---H--HCCTTTHHHHHHHHHHHHHHTTTT--SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHH---h--cCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 4799999999999999999999999999966655 2 3567788877788888876 4332 34567777777665
No 42
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=52.32 E-value=65 Score=32.92 Aligned_cols=205 Identities=12% Similarity=0.096 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHHhhcccchh-----hHHHHHHHhhc-CChhHHHHHHHHHHhhhhhhcccccCchHHHHHHHHHHHHh
Q 001344 13 LKSQTAALVAEIVRREGINLWQ-----ELFPSLVSLSS-KGPIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGLTQ 86 (1096)
Q Consensus 13 irnkla~vlveIvkrewp~~Wp-----~fl~~L~~l~~-~~~~~~El~L~iL~~L~EDv~~~~edl~~~Rr~~ll~~L~~ 86 (1096)
++...+..+..++.+ .+..+. +.++.|+++.+ .++..++.++.+|..|+.+-.. .| ..+.+
T Consensus 28 ~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-------~~-~~i~~---- 94 (252)
T 4db8_A 28 EQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE-------QI-QAVID---- 94 (252)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH-------HH-HHHHH----
T ss_pred HHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHH-------HH-HHHHH----
Confidence 455556666554444 223332 35677887764 3466777888888888742211 11 11111
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHHHHHHHHHhccccCCcc--hhcccCcHHHHHhhc--CChhH
Q 001344 87 SLPEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLP--DLAKYGIIHGCGFLL--SSPDF 162 (1096)
Q Consensus 87 ~~p~I~~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~--~i~~~~ll~~L~~ll--~~~~~ 162 (1096)
. ..++.+...+.. ....+...|+.++.....--+.. .+.+.+.++.|..++ +++.+
T Consensus 95 ~--g~i~~L~~lL~~------------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v 154 (252)
T 4db8_A 95 A--GALPALVQLLSS------------------PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 154 (252)
T ss_dssp T--THHHHHHHGGGC------------------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHH
T ss_pred c--CCHHHHHHHHcC------------------CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHH
Confidence 0 222222333221 01235556666666565544432 456778888885333 45889
Q ss_pred hhHHHHHHHHHcCCCCCCCCChHHHHHHHH-HHHHHHHHHHHHHhhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhhcc
Q 001344 163 RLHACEFFKLVSPRKGPADASASEFESAMH-DVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHC 241 (1096)
Q Consensus 163 R~~A~ecL~~i~sr~~~~~~~~~~f~~~l~-~i~~~~~~~~~~~~~~~~~~~~~~dE~~y~f~k~l~e~L~~lg~~~~~~ 241 (1096)
|..|+.+|..+.... + ...+.++. .++..++..+. + .+....+..+..|..+.......
T Consensus 155 ~~~a~~~L~~l~~~~--~----~~~~~~~~~~~i~~L~~ll~--------~------~~~~v~~~a~~~L~~l~~~~~~~ 214 (252)
T 4db8_A 155 LQEALWALSNIASGG--N----EQIQAVIDAGALPALVQLLS--------S------PNEQILQEALWALSNIASGGNEQ 214 (252)
T ss_dssp HHHHHHHHHHHTTSC--H----HHHHHHHHTTCHHHHHHGGG--------C------SSHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHHcCC--h----HHHHHHHHCCCHHHHHHHHC--------C------CCHHHHHHHHHHHHHHhcCCHHH
Confidence 999999999998543 1 11111110 11111222121 1 13346666677766664221110
Q ss_pred cccccccH-HHHHHHHHHhhccchhHHHHHHHH
Q 001344 242 IAREDTIL-SMYLQQMLGYFQHFKIALHFQSLL 273 (1096)
Q Consensus 242 ~~~~~~~l-~~~L~~lL~~t~hpsl~vs~~~l~ 273 (1096)
.. ... ...++.++.++.+++..+...++.
T Consensus 215 ~~---~~~~~g~i~~L~~ll~~~~~~v~~~A~~ 244 (252)
T 4db8_A 215 KQ---AVKEAGALEKLEQLQSHENEKIQKEAQE 244 (252)
T ss_dssp HH---HHHHTTHHHHHHTTTTCSSSHHHHTHHH
T ss_pred HH---HHHHCCcHHHHHHHhCCCCHHHHHHHHH
Confidence 00 001 135677888888888777666644
No 43
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=49.64 E-value=1.1e+02 Score=30.28 Aligned_cols=133 Identities=9% Similarity=0.024 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhccccCCc--chhcccCcHHHHHhhc--CChhHhhHHHHHHHHHcCCCCCCCCChHHHHHHHH-HHHHHH
Q 001344 124 TVTATLNAINAYAEWAPL--PDLAKYGIIHGCGFLL--SSPDFRLHACEFFKLVSPRKGPADASASEFESAMH-DVFQIL 198 (1096)
Q Consensus 124 ~v~~aL~tl~~yl~Wip~--~~i~~~~ll~~L~~ll--~~~~~R~~A~ecL~~i~sr~~~~~~~~~~f~~~l~-~i~~~~ 198 (1096)
+...|+.+++.....-+- ..+.+.+.++.|..++ +++.+|..|+.+|..+.... + ...+.+++ ..+..+
T Consensus 70 v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~--~----~~~~~~~~~~~i~~L 143 (210)
T 4db6_A 70 ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG--N----EQIQAVIDAGALPAL 143 (210)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC--H----HHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCC--H----HHHHHHHHcCcHHHH
Confidence 455566666555432222 2456678888885443 45899999999999998643 1 11111111 111112
Q ss_pred HHHHHHHhhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhhcccccccccHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Q 001344 199 MKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIAREDTILSMYLQQMLGYFQHFKIALHFQSLLFWLAL 278 (1096)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~dE~~y~f~k~l~e~L~~lg~~~~~~~~~~~~~l~~~L~~lL~~t~hpsl~vs~~~l~~W~~l 278 (1096)
+..++ + .+....+..+..|..+......... .-.-...++.+..+..|++..+...++.....+
T Consensus 144 ~~ll~--------~------~~~~v~~~a~~aL~~l~~~~~~~~~--~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l 207 (210)
T 4db6_A 144 VQLLS--------S------PNEQILQEALWALSNIASGGNEQKQ--AVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207 (210)
T ss_dssp HHHTT--------C------SCHHHHHHHHHHHHHHHTSCHHHHH--HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHc--------C------CCHHHHHHHHHHHHHHHcCCcHHHH--HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 22221 1 1345667777776666432111000 001114678888899999888888876655443
No 44
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=48.46 E-value=1.5e+02 Score=29.82 Aligned_cols=220 Identities=10% Similarity=0.048 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHhhcccchh----hHHHHHHHhh-cCChhHHHHHHHHHHhhhhhhcccccCchHHHHHHHHH
Q 001344 8 CEEWALKSQTAALVAEIVRREGINLWQ----ELFPSLVSLS-SKGPIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLR 82 (1096)
Q Consensus 8 ~e~~~irnkla~vlveIvkrewp~~Wp----~fl~~L~~l~-~~~~~~~El~L~iL~~L~EDv~~~~edl~~~Rr~~ll~ 82 (1096)
....-++..++..+..+.+..-...-. +.++.|+++. +.++..++.++.+|..|+.+-....+.+..
T Consensus 13 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-------- 84 (252)
T 4hxt_A 13 STDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVD-------- 84 (252)
T ss_dssp CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH--------
T ss_pred CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHH--------
Q ss_pred HHHhhHhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHHHHHHHHHhccccCCcchh--cccCcHHHHHhhcCC-
Q 001344 83 GLTQSLPEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDL--AKYGIIHGCGFLLSS- 159 (1096)
Q Consensus 83 ~L~~~~p~I~~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i--~~~~ll~~L~~ll~~- 159 (1096)
..+++.+...+.. ....+...++.++.....--+-..- .+.+.++.+..++.+
T Consensus 85 ------~~~i~~l~~ll~~------------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~ 140 (252)
T 4hxt_A 85 ------AGGVEVLVKLLTS------------------TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST 140 (252)
T ss_dssp ------TTHHHHHHHHTTC------------------SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS
T ss_pred ------CCCHHHHHHHHcC------------------CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC
Q ss_pred -hhHhhHHHHHHHHHcCCCCCCCCChHHHHH-HHHHHHHHHHHHHHHHhhhcCCCCCCCChhhhHHHHHHHHHHHHhhhh
Q 001344 160 -PDFRLHACEFFKLVSPRKGPADASASEFES-AMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTS 237 (1096)
Q Consensus 160 -~~~R~~A~ecL~~i~sr~~~~~~~~~~f~~-~l~~i~~~~~~~~~~~~~~~~~~~~~~dE~~y~f~k~l~e~L~~lg~~ 237 (1096)
+.+|..|+.||..+.... ++......+. .+..+... ..+.+....+..+..|..+...
T Consensus 141 ~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~~i~~L~~l------------------l~~~~~~v~~~a~~~L~~l~~~ 200 (252)
T 4hxt_A 141 DSEVQKEAARALANIASGP--DEAIKAIVDAGGVEVLVKL------------------LTSTDSEVQKEAARALANIASG 200 (252)
T ss_dssp CHHHHHHHHHHHHHHTTSC--HHHHHHHHHTTHHHHHHHH------------------TTCSCHHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHHHcCC--HHHHHHHHHCcCHHHHHHH------------------HCCCCHHHHHHHHHHHHHHHcC
Q ss_pred hhcccccccccHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHH
Q 001344 238 NLHCIAREDTILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRD 281 (1096)
Q Consensus 238 ~~~~~~~~~~~l~~~L~~lL~~t~hpsl~vs~~~l~~W~~lL~~ 281 (1096)
.-.... .-.-...++.++.+..+++..+...++..-..+..+
T Consensus 201 ~~~~~~--~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 201 PTSAIK--AIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSG 242 (252)
T ss_dssp BHHHHH--HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHT
T ss_pred CHHHHH--HHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcC
No 45
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=45.47 E-value=49 Score=39.79 Aligned_cols=90 Identities=11% Similarity=0.125 Sum_probs=59.8
Q ss_pred cCCCCchHHHHHHHHHHhhhhhhhcCCCchhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHHHHHHhcccchhh
Q 001344 457 LKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILP 536 (1096)
Q Consensus 457 ~~~~dP~l~s~~~~~l~~l~~fl~~~~~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl~~~~~~~l~P 536 (1096)
++.++|.+|...+++++.+. .++....++..+..++. + ....||+.|+.++.++.+.+|..+..
T Consensus 116 L~~~n~~vr~lAL~~L~~i~-----~~~~~~~l~~~l~~~L~-------~----~~~~VRk~A~~al~~l~~~~p~~v~~ 179 (618)
T 1w63_A 116 LNHSTQFVQGLALCTLGCMG-----SSEMCRDLAGEVEKLLK-------T----SNSYLRKKAALCAVHVIRKVPELMEM 179 (618)
T ss_dssp HSCSSSHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHH-------S----CCHHHHHHHHHHHHHHHHHCGGGGGG
T ss_pred cCCCCHhHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHc-------C----CCHHHHHHHHHHHHHHHHHChHHHHH
Confidence 36789999999888887775 23455555565555553 1 23489999999999999999876654
Q ss_pred HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHhc
Q 001344 537 HMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMAS 571 (1096)
Q Consensus 537 ~l~~i~~~i~~l~~~~~L~~~e~~~L~Eal~~i~~ 571 (1096)
+++.+ . ..+.+.+....+.|+.++..
T Consensus 180 ~~~~l----~-----~lL~D~d~~V~~~Al~~L~~ 205 (618)
T 1w63_A 180 FLPAT----K-----NLLNEKNHGVLHTSVVLLTE 205 (618)
T ss_dssp GGGGT----T-----TSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHH----H-----HHhCCCCHhHHHHHHHHHHH
Confidence 44333 2 12444555666666666654
No 46
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=43.86 E-value=6.1e+02 Score=32.24 Aligned_cols=131 Identities=10% Similarity=0.078 Sum_probs=74.8
Q ss_pred HHHHHHHHhhcccchhhHHHHHHHhhc---CChhHHHHHHHHHHhhhhhhcccccCchHHHHHHHHHHHHhhHhHHHHHH
Q 001344 19 ALVAEIVRREGINLWQELFPSLVSLSS---KGPIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGLTQSLPEILPLL 95 (1096)
Q Consensus 19 ~vlveIvkrewp~~Wp~fl~~L~~l~~---~~~~~~El~L~iL~~L~EDv~~~~edl~~~Rr~~ll~~L~~~~p~I~~~~ 95 (1096)
.+++.+..-.+++-=+-|++.|-+..+ .+-..+|-.+..+..++|=+.. + .....+|++++.+
T Consensus 435 d~L~~l~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~---~-----------~e~~~l~~vi~~L 500 (1023)
T 4hat_C 435 EVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSE---D-----------TEKRFVVTVIKDL 500 (1023)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCH---H-----------HHHHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCc---h-----------hHHHHHHHHHHHH
Confidence 555555544444333334444433322 3467889999999999863321 1 1233467777777
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHhhHHHHHHHHHHHHHhccccCCcchhcccCcHHHHHhhc--CChhHhhHHHHHHHHH
Q 001344 96 YSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAKYGIIHGCGFLL--SSPDFRLHACEFFKLV 173 (1096)
Q Consensus 96 ~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~~~~ll~~L~~ll--~~~~~R~~A~ecL~~i 173 (1096)
.++.++. .+ . .....+...+.-+++.|.+|+....=.=..+++.|...+ +.+.++..||.+|.-|
T Consensus 501 l~l~~~~---------~~-~---d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l 567 (1023)
T 4hat_C 501 LDLCVKK---------RG-K---DNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKI 567 (1023)
T ss_dssp HHHHHHC---------CS-H---HHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHhhhcc---------cc-C---cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 7665521 00 0 012335557789999999998432111112333333223 3478999999999999
Q ss_pred cCC
Q 001344 174 SPR 176 (1096)
Q Consensus 174 ~sr 176 (1096)
+..
T Consensus 568 ~~~ 570 (1023)
T 4hat_C 568 VQK 570 (1023)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 47
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=42.74 E-value=2e+02 Score=31.23 Aligned_cols=154 Identities=12% Similarity=0.154 Sum_probs=95.7
Q ss_pred HHHhhHHHHHHHHHHHHHhccccCCcchhcccCcHHHH-----Hhh-cCChhHh-hHHHHHHHHHcCCCCCCCCChHHHH
Q 001344 116 DVAKQHAATVTATLNAINAYAEWAPLPDLAKYGIIHGC-----GFL-LSSPDFR-LHACEFFKLVSPRKGPADASASEFE 188 (1096)
Q Consensus 116 ~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~~~~ll~~L-----~~l-l~~~~~R-~~A~ecL~~i~sr~~~~~~~~~~f~ 188 (1096)
+..+..-.+-+..|+-+..|++=.+-...+..++++-+ .-+ -+.|..| -+.+.|+..+++|=+. .-.+...
T Consensus 37 ~~vr~lR~vKkeiLkLiet~i~~~~d~~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~--~i~~~vp 114 (321)
T 1w9c_A 37 PLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGG--HITAEIP 114 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGG--GGGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHH--HhhhhHH
Confidence 34444555667778887778765443333333344433 222 2447888 6788888888876522 2233456
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhhcc-cccccccHHHHHHHHHHhhccchhHH
Q 001344 189 SAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHC-IAREDTILSMYLQQMLGYFQHFKIAL 267 (1096)
Q Consensus 189 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~dE~~y~f~k~l~e~L~~lg~~~~~~-~~~~~~~l~~~L~~lL~~t~hpsl~v 267 (1096)
.+++.+|...+++... | -|+-.++...+-++|-++..+.... +.-+++.+..++..++--.+|+...|
T Consensus 115 ~Il~~VFe~TL~MI~~-------d----f~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V 183 (321)
T 1w9c_A 115 QIFDAVFECTLNMINK-------D----FEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNV 183 (321)
T ss_dssp HHHHHHHHHHHHHHSS-------T----TTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHhc-------c----cccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchH
Confidence 6788888875554431 1 2233456666666766665443332 22234456778888888899999999
Q ss_pred HHHHHHHHHHHHHHh
Q 001344 268 HFQSLLFWLALMRDL 282 (1096)
Q Consensus 268 s~~~l~~W~~lL~~~ 282 (1096)
+...+..-..++++.
T Consensus 184 ~e~gL~il~~ll~n~ 198 (321)
T 1w9c_A 184 ADTGLQILFTLLQNV 198 (321)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999888888874
No 48
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=36.71 E-value=3.4e+02 Score=27.22 Aligned_cols=156 Identities=13% Similarity=0.153 Sum_probs=87.5
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHHH-HhhcccCCCChhhHHHHHhHHHHHHHHHHhhccCCCCCCCCChHHHHHHHH
Q 001344 367 RLLELVKFVASNKPLVAGVKVSERVMAI-INSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSR 445 (1096)
Q Consensus 367 ~~~~ilr~i~~~~P~~~~~~l~~~l~~~-l~~~~~~~~~s~~~~~~ea~~~~leav~~g~~~~~~~~~~~~~~~~~~l~~ 445 (1096)
.....+-.++.++|+..-+.+.-.+.++ ++. + - ..=.+...+|-|+..-++ .+..
T Consensus 89 eIa~a~G~la~i~Pe~v~~vVp~lfanyrigd--------~-k-ikIn~~yaLeeIaranP~--------------l~~~ 144 (253)
T 2db0_A 89 EIAKAFGQMAKEKPELVKSMIPVLFANYRIGD--------E-K-TKINVSYALEEIAKANPM--------------LMAS 144 (253)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCS--------H-H-HHHHHHHHHHHHHHHCHH--------------HHHH
T ss_pred HHHHHHhHHHHhCHHHHHhhHHHHHHHHhcCC--------c-c-ceecHHHHHHHHHHhChH--------------HHHH
Confidence 3455666778888877655544333222 111 1 1 111344455555443111 1222
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhhhhcCCCchhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHHH
Q 001344 446 IFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIR 525 (1096)
Q Consensus 446 ~l~~Ll~~ll~~~~~dP~l~s~~~~~l~~l~~fl~~~~~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~r 525 (1096)
++++++.++ ..+|..=+...+.++++++ .+++.++.+.|.++|..++ |.++-||..|..+|..
T Consensus 145 v~rdi~sml---tskd~~Dkl~aLnFi~alG---en~~~yv~PfLprL~aLL~-----------D~deiVRaSaVEtL~~ 207 (253)
T 2db0_A 145 IVRDFMSML---SSKNREDKLTALNFIEAMG---ENSFKYVNPFLPRIINLLH-----------DGDEIVRASAVEALVH 207 (253)
T ss_dssp HHHHHHHHT---SCSSHHHHHHHHHHHHTCC---TTTHHHHGGGHHHHHGGGG-----------CSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHh---cCCChHHHHHHHHHHHHHh---ccCccccCcchHHHHHHHc-----------CcchhhhHHHHHHHHH
Confidence 344444333 2455555566666666665 3445566667788888774 1345799999999999
Q ss_pred HHHhcccchhhHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHh
Q 001344 526 IAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMA 570 (1096)
Q Consensus 526 l~~~~~~~l~P~l~~i~~~i~~l~~~~~L~~~e~~~L~Eal~~i~ 570 (1096)
+|...|+ +-|.+...++.+. +-+.--+-...|+++-+.
T Consensus 208 lA~~npk-lRkii~~kl~e~~------D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 208 LATLNDK-LRKVVIKRLEELN------DTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp HHTSCHH-HHHHHHHHHHHCC------CSCHHHHHHHHHHHHHHH
T ss_pred HHHcCHH-HHHHHHHHHHHhc------CcHHHHHHHHHHHHHHHH
Confidence 9999887 6666665544443 344444456677776554
No 49
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=36.12 E-value=2.4e+02 Score=29.13 Aligned_cols=25 Identities=8% Similarity=-0.202 Sum_probs=13.9
Q ss_pred cHHHHHhhcCChhHhhHHHHHHHHH
Q 001344 149 IIHGCGFLLSSPDFRLHACEFFKLV 173 (1096)
Q Consensus 149 ll~~L~~ll~~~~~R~~A~ecL~~i 173 (1096)
.++.|...+.++++|..|+++|..+
T Consensus 224 ~~~~L~~~l~d~~vr~~a~~aL~~i 248 (280)
T 1oyz_A 224 VLSVLCDELKKNTVYDDIIEAAGEL 248 (280)
T ss_dssp GHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred hHHHHHHHhcCccHHHHHHHHHHhc
Confidence 4555544444555666666666655
No 50
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=31.14 E-value=90 Score=33.10 Aligned_cols=27 Identities=7% Similarity=-0.018 Sum_probs=21.2
Q ss_pred HHHHhhcCC--hhHhhHHHHHHHHHcCCC
Q 001344 151 HGCGFLLSS--PDFRLHACEFFKLVSPRK 177 (1096)
Q Consensus 151 ~~L~~ll~~--~~~R~~A~ecL~~i~sr~ 177 (1096)
+.++.+++| ..+|.+|+.|+.+++..-
T Consensus 210 ~~ia~ll~D~d~~VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 210 KTVAPFVGDKDVNVRNAAINVLVACFKFE 238 (266)
T ss_dssp HHHGGGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 777666654 789999999999988543
No 51
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=29.80 E-value=6.8e+02 Score=28.60 Aligned_cols=348 Identities=11% Similarity=0.052 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcc---ccCCcchhcccCcHHHHHhhcCC---hhHhhHHHHHHHHHcCCCCCCCCChHHHHHHHHHHH
Q 001344 122 AATVTATLNAINAYA---EWAPLPDLAKYGIIHGCGFLLSS---PDFRLHACEFFKLVSPRKGPADASASEFESAMHDVF 195 (1096)
Q Consensus 122 ~~~v~~aL~tl~~yl---~Wip~~~i~~~~ll~~L~~ll~~---~~~R~~A~ecL~~i~sr~~~~~~~~~~f~~~l~~i~ 195 (1096)
......|...+...+ .=.|+..|++.|.++.|..++.. +.+|..|+.||.-|++..
T Consensus 71 ~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~------------------ 132 (510)
T 3ul1_B 71 LESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT------------------ 132 (510)
T ss_dssp HHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC------------------
T ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC------------------
Q ss_pred HHHHHHHHHHhhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhhcccccccccHHHHHHHHHHhhccchhHHHHHHHHHH
Q 001344 196 QILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIAREDTILSMYLQQMLGYFQHFKIALHFQSLLFW 275 (1096)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~dE~~y~f~k~l~e~L~~lg~~~~~~~~~~~~~l~~~L~~lL~~t~hpsl~vs~~~l~~W 275 (1096)
.+-.+.+.+. ..++.++.++++|+..+...++...
T Consensus 133 -------------------------~e~~~~vv~~--------------------GaIp~Lv~lL~s~~~~v~e~A~~aL 167 (510)
T 3ul1_B 133 -------------------------SEQTKAVVDG--------------------GAIPAFISLLASPHAHISEQAVWAL 167 (510)
T ss_dssp -------------------------HHHHHHHHHT--------------------THHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHC--------------------CCHHHHHHHHcCCCHHHHHHHHHHH
Q ss_pred HHHHHH-hhhhccccccCCCCCcccCCCCCCCCcchhhhhhhhcchhhhHHHHHHHHHHHhhcccCCCCCCCCccccccc
Q 001344 276 LALMRD-LMSKTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLNDDISGAILDISFQRLVKREKAPGTQGPLELWSDD 354 (1096)
Q Consensus 276 ~~lL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~Ll~~~~~rm~~~e~~~~~~~~~e~~~~D 354 (1096)
..+..+ ...+ ...+..+.++.|+ ......
T Consensus 168 ~nLa~d~~~~r------------------------------~~v~~~G~i~~Ll--------------------~lL~~~ 197 (510)
T 3ul1_B 168 GNIAGDGSAFR------------------------------DLVIKHGAIDPLL--------------------ALLAVP 197 (510)
T ss_dssp HHHHTTCHHHH------------------------------HHHHHTTCHHHHH--------------------HHTCSS
T ss_pred HHHHhCCHHHH------------------------------HHHHHcCChHHHH--------------------HHHHhc
Q ss_pred cCChhhHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHhhcccCCCChhhHHHHHhHHHHHHHHHHhhccCCCCCCC
Q 001344 355 FEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGG 434 (1096)
Q Consensus 355 fd~~~ef~~~Rk~~~~ilr~i~~~~P~~~~~~l~~~l~~~l~~~~~~~~~s~~~~~~ea~~~~leav~~g~~~~~~~~~~ 434 (1096)
..+...-.-.|.....+-..+....|......+...+..+..- +.+...-........+..+..+.....
T Consensus 198 ~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~L-----L~~~~~~v~~~A~~aL~~L~~~~~~~~----- 267 (510)
T 3ul1_B 198 DLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL-----LHHNDPEVLADSCWAISYLTDGPNERI----- 267 (510)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHH-----TTCSCHHHHHHHHHHHHHHTSSCHHHH-----
T ss_pred cchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHH-----HhcCCHHHHHHHHHHHHHHhhchhhhH-----
Q ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhhhhcCCCchhH--HHHHHHHhhccCCCccCCCCchHH
Q 001344 435 ANSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGG--VISKLFELLTSLPFVFKDPSTNSA 512 (1096)
Q Consensus 435 ~~~~~~~~l~~~l~~Ll~~ll~~~~~dP~l~s~~~~~l~~l~~fl~~~~~~l~~--VL~klf~~l~~~p~~~~~~~~~~~ 512 (1096)
..-....+++.+..++ +..++.++...+..++.+...-......+.. ++..+...+ ....
T Consensus 268 -~~i~~~g~i~~Lv~lL------~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL-----------~~~~ 329 (510)
T 3ul1_B 268 -EMVVKKGVVPQLVKLL------GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL-----------TNPK 329 (510)
T ss_dssp -HHHHTTTCHHHHHHHH------TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CT-----------TCSS
T ss_pred -HHHHhcccchhhhhhh------cCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHh-----------cCCC
Q ss_pred HHHHHHHHHHHHHHHHhcccchhhHHH-HHHHHHHHHHHcccccHHHHHHHHHHHHHHhcCCCHHHHHHHH-HHHhHHHH
Q 001344 513 RHARLQICTSFIRIAKTSDKSILPHMK-DIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEVL-AWLLEPLS 590 (1096)
Q Consensus 513 k~vR~~A~~~f~rl~~~~~~~l~P~l~-~i~~~i~~l~~~~~L~~~e~~~L~Eal~~i~~~~~~~~q~~~l-~~ll~P~~ 590 (1096)
.++|+.||.++..|+...+......++ +++..+-.++.++ +..-+..-.-||.-++...+.+....++ ...++|+.
T Consensus 330 ~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~--~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~ 407 (510)
T 3ul1_B 330 TNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA--DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLM 407 (510)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHH
Q ss_pred hhhchHhHhhhhcCChHHHHHhc
Q 001344 591 QQWMQLEWQNNYLSEPLGLVRLC 613 (1096)
Q Consensus 591 ~~W~~~~~~~~~l~~~~~f~~~~ 613 (1096)
.....++.+- ...-..++.+++
T Consensus 408 ~LL~~~d~~i-~~~~L~aL~nil 429 (510)
T 3ul1_B 408 NLLSAKDTKI-IQVILDAISNIF 429 (510)
T ss_dssp HGGGCSCHHH-HHHHHHHHHHHH
T ss_pred HHhcCCCHHH-HHHHHHHHHHHH
No 52
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=28.92 E-value=4.5e+02 Score=26.25 Aligned_cols=118 Identities=17% Similarity=0.188 Sum_probs=59.8
Q ss_pred CCCCchHHHHHHHHHHhhhhhhhcC-CCch-hHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHHHHHHhcccchh
Q 001344 458 KWTEPPLVVALGHYLDALGPFLKYY-PDAV-GGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSIL 535 (1096)
Q Consensus 458 ~~~dP~l~s~~~~~l~~l~~fl~~~-~~~l-~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl~~~~~~~l~ 535 (1096)
+..++.++...++.+..++.--..+ ...+ ..++..+.+.+. + ....+|..|+.+|..++...+....
T Consensus 106 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-------~----~~~~v~~~a~~~L~~l~~~~~~~~~ 174 (252)
T 4db8_A 106 SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS-------S----PNEQILQEALWALSNIASGGNEQIQ 174 (252)
T ss_dssp GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGG-------C----SCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHh-------C----CCHHHHHHHHHHHHHHHcCChHHHH
Confidence 4468889988888887775422111 0011 124555555553 1 1237899999999999976433221
Q ss_pred hHH-HHHHHHHHHHHHcccccHHHHHHHHHHHHHHhc--CCCHHHHHHHHHH-HhHHHHh
Q 001344 536 PHM-KDIADTMAYLQREGRLLRGEHNLLGEAFLVMAS--AAGIQQQQEVLAW-LLEPLSQ 591 (1096)
Q Consensus 536 P~l-~~i~~~i~~l~~~~~L~~~e~~~L~Eal~~i~~--~~~~~~q~~~l~~-ll~P~~~ 591 (1096)
..+ .+++..+-.++..+ +...-..|+.++.+ ..+.+.+..+++. .++++..
T Consensus 175 ~~~~~~~i~~L~~ll~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ 229 (252)
T 4db8_A 175 AVIDAGALPALVQLLSSP-----NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQ 229 (252)
T ss_dssp HHHHTTCHHHHHHGGGCS-----SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHT
T ss_pred HHHHCCCHHHHHHHHCCC-----CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHH
Confidence 111 11122233333222 23344555555554 2344444444432 5555544
No 53
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=28.56 E-value=79 Score=35.09 Aligned_cols=90 Identities=8% Similarity=-0.031 Sum_probs=59.9
Q ss_pred cCCCCchHHHHHHHHHHhhhhhhhcCCCchhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHHHHHHhcccchhh
Q 001344 457 LKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILP 536 (1096)
Q Consensus 457 ~~~~dP~l~s~~~~~l~~l~~fl~~~~~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl~~~~~~~l~P 536 (1096)
++.++|.+|...+.++..+- .++.+..+...+-.++. + .+-.||+.|+-+..++...+|+.+.-
T Consensus 113 l~~~N~~iR~lALRtL~~I~-----~~~m~~~l~~~lk~~L~-------d----~~pyVRk~A~l~~~kL~~~~pe~v~~ 176 (355)
T 3tjz_B 113 MTGKEDSYRGPAVRALCQIT-----DSTMLQAIERYMKQAIV-------D----KVPSVSSSALVSSLHLLKCSFDVVKR 176 (355)
T ss_dssp HHSSCHHHHHHHHHHHHHHC-----CTTTHHHHHHHHHHHHT-------C----SSHHHHHHHHHHHHHHTTTCHHHHHT
T ss_pred cCCCcHhHHHHHHHHHhcCC-----CHHHHHHHHHHHHHHcC-------C----CCHHHHHHHHHHHHHHhccCHHHHHH
Confidence 37788999988888666652 34555555555544453 1 23379999999999999998887665
Q ss_pred HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHhc
Q 001344 537 HMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMAS 571 (1096)
Q Consensus 537 ~l~~i~~~i~~l~~~~~L~~~e~~~L~Eal~~i~~ 571 (1096)
+++. +++++. +......|.|++++..
T Consensus 177 ~~~~----l~~ll~-----d~n~~V~~~Al~lL~e 202 (355)
T 3tjz_B 177 WVNE----AQEAAS-----SDNIMVQYHALGLLYH 202 (355)
T ss_dssp THHH----HHHHTT-----CSSHHHHHHHHHHHHH
T ss_pred HHHH----HHHHhc-----CCCccHHHHHHHHHHH
Confidence 5544 444333 3445566888887765
No 54
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=27.22 E-value=3.6e+02 Score=26.25 Aligned_cols=28 Identities=7% Similarity=-0.075 Sum_probs=11.8
Q ss_pred hHHHHHHHhh-cCChhHHHHHHHHHHhhh
Q 001344 35 ELFPSLVSLS-SKGPIQAELVSMMLRWLP 62 (1096)
Q Consensus 35 ~fl~~L~~l~-~~~~~~~El~L~iL~~L~ 62 (1096)
+.++.|+.+. ..++..+..++..|..+.
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~ 47 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIG 47 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 3344444433 223444444444444443
No 55
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=26.60 E-value=1.8e+02 Score=30.83 Aligned_cols=66 Identities=9% Similarity=0.044 Sum_probs=40.0
Q ss_pred CCCCchHHHHHHHHHHhhhhhhhcC-C--------CchhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHHHHHH
Q 001344 458 KWTEPPLVVALGHYLDALGPFLKYY-P--------DAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAK 528 (1096)
Q Consensus 458 ~~~dP~l~s~~~~~l~~l~~fl~~~-~--------~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl~~ 528 (1096)
..+++.+....+.++..+...+... . .++|.+++|+ |+ +...||.++-..+..++.
T Consensus 97 ~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKl--------Gd-------~k~~vR~~~r~il~~l~~ 161 (266)
T 2of3_A 97 FETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKT--------GE-------AKDNMRTSVRDIVNVLSD 161 (266)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGG--------GC-------SSHHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHh--------CC-------ChHHHHHHHHHHHHHHHH
Confidence 4567777777777777765555432 1 2334444443 21 223688888888888888
Q ss_pred hcccc-hhhHH
Q 001344 529 TSDKS-ILPHM 538 (1096)
Q Consensus 529 ~~~~~-l~P~l 538 (1096)
.+|.. +.+++
T Consensus 162 v~~~~~v~~~l 172 (266)
T 2of3_A 162 VVGPLKMTPML 172 (266)
T ss_dssp HHCHHHHHHHH
T ss_pred HCCHHHHHHHH
Confidence 76544 65654
No 56
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=24.87 E-value=1.3e+02 Score=32.28 Aligned_cols=116 Identities=10% Similarity=0.163 Sum_probs=63.5
Q ss_pred CCCCchHHHHHHHHHHhhhhhhhcCCCc----h-hHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHHHHHHhccc
Q 001344 458 KWTEPPLVVALGHYLDALGPFLKYYPDA----V-GGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDK 532 (1096)
Q Consensus 458 ~~~dP~l~s~~~~~l~~l~~fl~~~~~~----l-~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl~~~~~~ 532 (1096)
+.++|.++...+|+++.+.. .+|.. + ..++..+...|.+ + ....+|+.|+.++..|++.++.
T Consensus 92 ~s~~~~vr~~Aa~~Lg~ia~---~n~~~~~~vv~~g~l~~Ll~LL~~------~----~~~~v~~~A~~ALsnl~~~~~~ 158 (296)
T 1xqr_A 92 EAGAAGLRWRAAQLIGTCSQ---NVAAIQEQVLGLGALRKLLRLLDR------D----ACDTVRVKALFAISCLVREQEA 158 (296)
T ss_dssp TCSSHHHHHHHHHHHHHHHT---TCHHHHHHHHHTTHHHHHHHHHHH------C----SCHHHHHHHHHHHHHHHTTCHH
T ss_pred cCCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHCCCHHHHHHHHcc------C----CCHHHHHHHHHHHHHHHcCCcH
Confidence 46788888888887776642 22211 1 1244555555531 1 1237899999999999987655
Q ss_pred chhhHHH-HHHHHHHHHHHcccccHHHHHHHHHHHHHHhc--CCCHHHHHHHHH-HHhHHHHh
Q 001344 533 SILPHMK-DIADTMAYLQREGRLLRGEHNLLGEAFLVMAS--AAGIQQQQEVLA-WLLEPLSQ 591 (1096)
Q Consensus 533 ~l~P~l~-~i~~~i~~l~~~~~L~~~e~~~L~Eal~~i~~--~~~~~~q~~~l~-~ll~P~~~ 591 (1096)
....+.+ +.+..+..++.++ +.....+|+.++++ ..+.+.+..+++ ..++|+..
T Consensus 159 ~~~~~~~~ggi~~L~~lL~~~-----d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~ 216 (296)
T 1xqr_A 159 GLLQFLRLDGFSVLMRAMQQQ-----VQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVA 216 (296)
T ss_dssp HHHHHHHTTHHHHHHHHHHSS-----CHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCC-----CHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHH
Confidence 4444443 2333444444432 34455667766665 123444444442 35555554
No 57
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=22.88 E-value=1.9e+02 Score=28.34 Aligned_cols=64 Identities=14% Similarity=0.106 Sum_probs=36.4
Q ss_pred CCCCchHHHHHHHHHHhhhhhhhcCCCch--hHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHHHHHHhccc
Q 001344 458 KWTEPPLVVALGHYLDALGPFLKYYPDAV--GGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDK 532 (1096)
Q Consensus 458 ~~~dP~l~s~~~~~l~~l~~fl~~~~~~l--~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl~~~~~~ 532 (1096)
+..++.++...++.+..+...-......+ ..++..+.+.|. + ....+|..||.++..|+...+.
T Consensus 64 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~-------~----~~~~v~~~a~~~L~~l~~~~~~ 129 (210)
T 4db6_A 64 SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS-------S----PNEQILQEALWALSNIASGGNE 129 (210)
T ss_dssp TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTT-------C----SCHHHHHHHHHHHHHHTTSCHH
T ss_pred cCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHc-------C----CcHHHHHHHHHHHHHHHcCCHH
Confidence 45577888887777776653111100000 113444544453 1 1247899999999999976443
No 58
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=20.39 E-value=5.7e+02 Score=24.48 Aligned_cols=14 Identities=14% Similarity=0.019 Sum_probs=7.8
Q ss_pred hhHhhHHHHHHHHH
Q 001344 160 PDFRLHACEFFKLV 173 (1096)
Q Consensus 160 ~~~R~~A~ecL~~i 173 (1096)
+.+|..|+.+|..+
T Consensus 152 ~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 152 GWVRQSAADALGEI 165 (201)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 45555555555554
Done!