Query 001345
Match_columns 1096
No_of_seqs 218 out of 304
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 22:23:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001345.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001345hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2011 Sister chromatid cohes 100.0 3E-170 6E-175 1538.0 72.8 916 36-989 78-1020(1048)
2 COG5537 IRR1 Cohesin [Cell div 100.0 6.6E-45 1.4E-49 415.6 45.2 504 39-588 84-652 (740)
3 PF08514 STAG: STAG domain ; 100.0 2.7E-29 6E-34 244.7 12.2 113 115-227 4-118 (118)
4 PF12717 Cnd1: non-SMC mitotic 97.1 0.0025 5.4E-08 67.1 9.7 93 255-354 1-93 (178)
5 KOG2011 Sister chromatid cohes 96.6 0.0063 1.4E-07 77.8 9.7 307 741-1067 726-1042(1048)
6 COG5537 IRR1 Cohesin [Cell div 96.2 0.0053 1.1E-07 73.5 5.1 129 236-385 161-300 (740)
7 PF12717 Cnd1: non-SMC mitotic 96.1 0.14 3.1E-06 53.8 14.8 88 294-387 1-90 (178)
8 PF01602 Adaptin_N: Adaptin N 96.1 0.33 7.1E-06 58.9 20.0 129 253-385 125-256 (526)
9 PF12348 CLASP_N: CLASP N term 95.2 0.48 1.1E-05 51.2 15.3 107 246-354 98-207 (228)
10 PF13646 HEAT_2: HEAT repeats; 95.0 0.13 2.8E-06 46.8 8.4 77 252-348 10-87 (88)
11 PRK09687 putative lyase; Provi 94.4 0.16 3.5E-06 57.5 9.4 118 251-385 100-217 (280)
12 KOG1020 Sister chromatid cohes 94.1 0.18 4E-06 66.3 9.7 138 247-386 1232-1402(1692)
13 PRK13800 putative oxidoreducta 93.8 0.31 6.6E-06 63.8 11.4 48 253-308 632-679 (897)
14 PRK09687 putative lyase; Provi 93.7 0.33 7.2E-06 55.0 10.0 119 253-385 65-184 (280)
15 PRK13800 putative oxidoreducta 93.7 0.22 4.7E-06 65.1 9.6 117 248-386 748-864 (897)
16 KOG0414 Chromosome condensatio 93.0 0.39 8.5E-06 62.1 9.8 156 141-355 903-1066(1251)
17 PTZ00429 beta-adaptin; Provisi 92.8 0.25 5.4E-06 62.9 7.9 99 248-355 111-210 (746)
18 cd00020 ARM Armadillo/beta-cat 92.5 0.47 1E-05 44.9 7.7 97 254-352 19-119 (120)
19 PF12830 Nipped-B_C: Sister ch 92.0 0.4 8.7E-06 51.1 7.2 65 321-385 5-70 (187)
20 cd00020 ARM Armadillo/beta-cat 91.0 1.1 2.3E-05 42.4 8.4 107 277-385 3-116 (120)
21 PF13646 HEAT_2: HEAT repeats; 90.8 0.47 1E-05 43.1 5.5 77 289-382 7-85 (88)
22 PF10508 Proteasom_PSMB: Prote 90.0 2.4 5.1E-05 52.1 12.2 98 255-354 51-149 (503)
23 KOG2023 Nuclear transport rece 87.9 1 2.2E-05 55.4 6.7 101 251-355 183-287 (885)
24 PF04826 Arm_2: Armadillo-like 87.4 2.9 6.3E-05 46.9 9.6 96 254-352 25-123 (254)
25 KOG1820 Microtubule-associated 86.6 16 0.00035 47.3 16.6 114 236-354 331-444 (815)
26 PF12719 Cnd3: Nuclear condens 86.1 4.5 9.7E-05 46.2 10.5 140 243-384 28-180 (298)
27 PF01602 Adaptin_N: Adaptin N 85.6 2.3 4.9E-05 51.6 8.3 91 252-351 89-179 (526)
28 PLN03200 cellulose synthase-in 85.1 81 0.0017 45.1 22.8 126 252-386 498-635 (2102)
29 KOG2259 Uncharacterized conser 84.6 1.5 3.2E-05 54.1 5.7 140 238-386 278-472 (823)
30 KOG2025 Chromosome condensatio 84.4 28 0.00061 43.9 16.2 135 241-382 44-186 (892)
31 COG5218 YCG1 Chromosome conden 83.4 30 0.00065 42.8 15.7 193 130-346 65-293 (885)
32 PF12333 Ipi1_N: Rix1 complex 82.6 2.4 5.1E-05 41.0 5.3 54 254-307 23-100 (102)
33 KOG1525 Sister chromatid cohes 82.4 35 0.00076 46.3 17.3 122 246-377 304-441 (1266)
34 PF12755 Vac14_Fab1_bd: Vacuol 81.6 7 0.00015 37.5 8.0 70 281-353 27-96 (97)
35 KOG1240 Protein kinase contain 80.8 19 0.00042 47.7 13.6 217 146-386 501-722 (1431)
36 PF10508 Proteasom_PSMB: Prote 80.5 8.4 0.00018 47.4 10.3 99 254-354 89-190 (503)
37 PF12348 CLASP_N: CLASP N term 79.3 13 0.00028 40.1 10.3 132 253-387 18-158 (228)
38 PTZ00429 beta-adaptin; Provisi 79.2 2.1E+02 0.0046 37.2 35.7 158 217-386 33-205 (746)
39 COG5096 Vesicle coat complex, 78.7 5.7 0.00012 50.7 8.1 99 247-354 97-196 (757)
40 KOG2025 Chromosome condensatio 78.7 21 0.00045 45.0 12.5 208 128-360 58-301 (892)
41 TIGR02270 conserved hypothetic 78.5 9.5 0.00021 45.7 9.6 106 253-384 97-202 (410)
42 PF13513 HEAT_EZ: HEAT-like re 77.3 7.4 0.00016 32.6 6.0 55 295-351 1-55 (55)
43 KOG2259 Uncharacterized conser 76.0 7.9 0.00017 48.1 7.9 144 236-389 367-530 (823)
44 KOG1240 Protein kinase contain 73.0 20 0.00043 47.5 10.7 177 280-476 461-679 (1431)
45 KOG1059 Vesicle coat complex A 72.0 9.1 0.0002 48.0 7.2 94 234-354 273-366 (877)
46 PF13513 HEAT_EZ: HEAT-like re 71.9 4.3 9.3E-05 34.0 3.3 53 256-308 1-55 (55)
47 PF02985 HEAT: HEAT repeat; I 71.6 4.6 9.9E-05 30.2 3.0 27 284-310 3-29 (31)
48 KOG1949 Uncharacterized conser 71.3 14 0.0003 46.4 8.4 99 252-354 230-332 (1005)
49 KOG0414 Chromosome condensatio 70.0 8.4 0.00018 50.7 6.6 126 250-386 933-1061(1251)
50 KOG2032 Uncharacterized conser 69.3 24 0.00052 42.8 9.6 134 248-382 264-409 (533)
51 PF11935 DUF3453: Domain of un 69.2 9.5 0.00021 42.3 6.2 65 289-354 1-73 (239)
52 PF12755 Vac14_Fab1_bd: Vacuol 68.2 9 0.0002 36.7 5.0 74 235-310 21-96 (97)
53 KOG1949 Uncharacterized conser 68.2 16 0.00035 45.8 8.1 116 152-311 216-332 (1005)
54 PF02985 HEAT: HEAT repeat; I 66.8 8.8 0.00019 28.7 3.7 28 327-354 3-30 (31)
55 KOG1077 Vesicle coat complex A 65.2 4E+02 0.0087 34.3 20.4 90 257-355 129-218 (938)
56 PF14664 RICTOR_N: Rapamycin-i 64.1 27 0.00059 41.4 8.9 87 264-354 5-98 (371)
57 COG5096 Vesicle coat complex, 63.1 65 0.0014 41.6 12.3 151 216-382 35-188 (757)
58 KOG1061 Vesicle coat complex A 63.1 15 0.00033 46.5 6.8 105 241-355 85-191 (734)
59 KOG1293 Proteins containing ar 62.8 32 0.0007 43.0 9.3 100 254-354 429-534 (678)
60 TIGR02270 conserved hypothetic 60.8 51 0.0011 39.7 10.5 111 248-385 60-172 (410)
61 smart00229 RasGEFN Guanine nuc 59.7 14 0.00031 36.2 4.9 50 257-306 70-124 (127)
62 COG5218 YCG1 Chromosome conden 59.1 1.2E+02 0.0026 38.0 12.8 108 272-382 81-192 (885)
63 KOG4653 Uncharacterized conser 58.4 49 0.0011 42.7 9.9 134 253-387 738-916 (982)
64 PF08389 Xpo1: Exportin 1-like 54.9 1.8E+02 0.0039 28.6 11.9 49 255-305 99-148 (148)
65 KOG1020 Sister chromatid cohes 53.7 1.2E+02 0.0027 41.5 12.7 98 248-351 861-958 (1692)
66 PF12765 Cohesin_HEAT: HEAT re 52.8 15 0.00032 29.9 3.0 41 265-305 2-42 (42)
67 cd03572 ENTH_epsin_related ENT 52.5 16 0.00035 36.6 3.8 47 263-311 22-68 (122)
68 KOG1851 Uncharacterized conser 49.9 88 0.0019 43.0 10.6 107 249-358 1495-1603(1710)
69 KOG1242 Protein containing ada 49.7 5.1E+02 0.011 32.7 16.4 94 288-386 223-321 (569)
70 KOG1060 Vesicle coat complex A 49.2 5E+02 0.011 33.9 16.3 117 255-381 84-201 (968)
71 PF10363 DUF2435: Protein of u 48.3 59 0.0013 30.9 6.7 61 290-354 12-73 (92)
72 KOG2149 Uncharacterized conser 48.2 83 0.0018 37.5 9.2 81 271-354 48-129 (393)
73 PF14584 DUF4446: Protein of u 47.3 1.4E+02 0.0031 31.1 9.8 61 192-252 19-89 (151)
74 KOG4653 Uncharacterized conser 41.5 3.9E+02 0.0084 35.1 13.9 166 180-351 788-962 (982)
75 PF05402 PqqD: Coenzyme PQQ sy 41.0 45 0.00098 29.1 4.5 43 38-81 19-61 (68)
76 smart00638 LPD_N Lipoprotein N 38.5 1.9E+02 0.0041 36.1 11.0 119 255-385 410-541 (574)
77 COG1413 FOG: HEAT repeat [Ener 38.0 1.3E+02 0.0027 34.6 8.8 109 253-385 85-205 (335)
78 KOG2023 Nuclear transport rece 37.2 1E+03 0.023 30.7 29.6 106 272-384 169-280 (885)
79 PF12719 Cnd3: Nuclear condens 36.0 7E+02 0.015 28.4 16.3 207 300-535 2-219 (298)
80 PF05004 IFRD: Interferon-rela 35.9 7.5E+02 0.016 28.7 20.0 101 253-356 142-260 (309)
81 PF14664 RICTOR_N: Rapamycin-i 35.3 3.4E+02 0.0073 32.4 11.8 131 254-388 120-268 (371)
82 PF13251 DUF4042: Domain of un 35.3 1.2E+02 0.0026 32.6 7.3 116 266-382 23-167 (182)
83 KOG0943 Predicted ubiquitin-pr 35.2 57 0.0012 43.3 5.5 69 855-924 1525-1597(3015)
84 cd06224 REM Guanine nucleotide 33.8 23 0.0005 34.3 1.6 26 255-280 63-88 (122)
85 KOG2160 Armadillo/beta-catenin 32.8 3.8E+02 0.0082 31.7 11.2 99 252-354 93-197 (342)
86 KOG0946 ER-Golgi vesicle-tethe 32.2 1.5E+02 0.0032 38.4 8.2 51 334-384 132-190 (970)
87 PF08767 CRM1_C: CRM1 C termin 31.9 1.9E+02 0.0042 33.6 8.9 86 255-340 133-230 (319)
88 KOG1060 Vesicle coat complex A 31.8 2.9E+02 0.0064 35.8 10.7 127 251-385 152-312 (968)
89 PF08064 UME: UME (NUC010) dom 31.7 1.5E+02 0.0033 28.8 6.9 86 276-370 3-98 (107)
90 COG5098 Chromosome condensatio 31.1 95 0.0021 39.4 6.3 66 283-353 348-415 (1128)
91 KOG1062 Vesicle coat complex A 30.5 1.5E+02 0.0032 38.3 8.0 100 250-355 40-210 (866)
92 KOG1525 Sister chromatid cohes 29.9 53 0.0011 44.7 4.3 118 256-382 273-398 (1266)
93 COG5219 Uncharacterized conser 28.9 29 0.00064 44.8 1.7 92 252-349 56-151 (1525)
94 PLN03200 cellulose synthase-in 28.6 3.1E+02 0.0066 39.7 11.2 130 255-384 622-759 (2102)
95 PF11701 UNC45-central: Myosin 28.3 51 0.0011 34.2 3.1 99 252-352 15-116 (157)
96 PF12460 MMS19_C: RNAPII trans 28.0 1.1E+03 0.024 28.2 14.8 112 235-354 187-299 (415)
97 PF14500 MMS19_N: Dos2-interac 27.8 1.9E+02 0.0041 32.8 7.7 82 284-371 2-87 (262)
98 KOG1059 Vesicle coat complex A 27.5 1.1E+02 0.0023 39.2 6.0 62 287-354 150-211 (877)
99 PF01347 Vitellogenin_N: Lipop 27.3 56 0.0012 40.9 3.8 116 255-385 448-585 (618)
100 PF11698 V-ATPase_H_C: V-ATPas 26.1 1.1E+02 0.0025 30.6 4.9 56 255-310 57-115 (119)
101 PF13251 DUF4042: Domain of un 25.3 4.2E+02 0.009 28.5 9.3 122 234-356 21-177 (182)
102 COG5240 SEC21 Vesicle coat com 24.9 1.7E+02 0.0037 36.5 6.9 95 254-353 443-555 (898)
103 KOG1820 Microtubule-associated 24.6 2.3E+02 0.005 37.2 8.5 158 216-383 269-437 (815)
104 PF05531 NPV_P10: Nucleopolyhe 24.3 3.3E+02 0.0071 25.3 7.0 51 190-240 12-66 (75)
105 PF02178 AT_hook: AT hook moti 23.8 35 0.00075 21.3 0.5 10 1006-1015 2-11 (13)
106 PF05004 IFRD: Interferon-rela 23.7 3.6E+02 0.0079 31.2 9.2 79 283-367 45-128 (309)
107 PF10363 DUF2435: Protein of u 22.9 3.6E+02 0.0077 25.7 7.4 74 252-326 13-87 (92)
108 KOG0211 Protein phosphatase 2A 22.7 2.4E+02 0.0053 36.7 8.1 57 294-354 570-626 (759)
109 smart00384 AT_hook DNA binding 22.7 51 0.0011 24.4 1.3 14 1006-1019 2-15 (26)
110 PRK13280 N-glycosylase/DNA lya 22.3 5.5E+02 0.012 29.4 9.9 148 530-686 3-167 (269)
111 PF12231 Rif1_N: Rap1-interact 22.1 4.5E+02 0.0098 31.1 9.8 97 283-381 177-295 (372)
112 PF08569 Mo25: Mo25-like; Int 21.7 2.6E+02 0.0057 32.9 7.6 80 254-333 221-306 (335)
113 KOG0211 Protein phosphatase 2A 21.5 4.1E+02 0.0089 34.7 9.7 132 249-383 244-378 (759)
114 PF04826 Arm_2: Armadillo-like 21.4 5.6E+02 0.012 28.9 9.9 119 231-354 87-206 (254)
115 KOG2160 Armadillo/beta-catenin 20.8 7.7E+02 0.017 29.2 10.9 135 251-388 133-281 (342)
116 PHA03386 P10 fibrous body prot 20.5 3.8E+02 0.0083 25.8 6.8 49 189-240 12-60 (94)
117 KOG2141 Protein involved in hi 20.3 2E+03 0.043 28.5 16.3 154 516-682 319-475 (822)
No 1
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.6e-170 Score=1537.98 Aligned_cols=916 Identities=30% Similarity=0.481 Sum_probs=817.2
Q ss_pred chhhhHHHHHhcCCCCHHHHHHHHHHHHhhCcHHHHHHHHHHHHHhcCCCcccCccccCCCChHHHHHHHHHHHhcCCcc
Q 001345 36 SIELSLIEVIKGNGKLIPQVVKLWVERYEKDAKPAIAELLTMLFEACGAKYYLQGESLDEIDVDDVVVALVNLARRGEVE 115 (1096)
Q Consensus 36 ~~~~~L~~~v~~~~~~i~~va~~Wie~Y~~d~~~Al~eLinfil~~~Gc~~~It~~~~~~~d~~~ii~~l~e~~~~~~~~ 115 (1096)
.+.++||.+|++++..++++|++|++.|++|++.||++||||||+||||++.||++|++++|..+++..|++.|.++..+
T Consensus 78 ~~~~eLf~~l~~~k~~i~~lv~~W~e~Yk~n~~~al~~linf~l~~cGck~~Vt~~~v~~~ds~~i~~~~~e~~~e~es~ 157 (1048)
T KOG2011|consen 78 FDPNELFAILLDSKSPIEELVDEWIEDYKENRDKALLELINFFLQCCGCKGRVTDFDVQDVDSSSITLSMTELFDERESG 157 (1048)
T ss_pred cChHHHHHHHHcccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCcccccHHhhccccchHHHHHHHHHHhhhhhc
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999986667
Q ss_pred ccc-ccccccchhHHHHHHHHHHHHHHhhcc-CCccchHhHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 001345 116 DYQ-SSKRKELKNFKDNLVSFWDNLVVECQN-GPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFISVAKM 193 (1096)
Q Consensus 116 ~y~-~sk~k~~K~Fr~n~~eF~~~Lv~~~~~-~~L~D~~lmd~l~~wL~~LS~S~vR~fRHTATl~aL~l~taLv~va~~ 193 (1096)
||| .++||.||+||.|||+|+.+||.+|++ ++|||+++|+++++||+|||+|++|+||||||++||++||+||.||.+
T Consensus 158 DYpl~~~g~~~k~fr~~~~~fl~~lV~q~q~~s~l~d~~lmd~~is~LtamSdSqvR~fRhTaTl~~mklmt~Lv~va~~ 237 (1048)
T KOG2011|consen 158 DYPLTSKGPEWKNFRENFCEFLPTLVSQCQYGSCLFDSFLMDDLISWLTAMSDSQVRAFRHTATLAAMKLMTALVSVALN 237 (1048)
T ss_pred cCcCCCCCHHHHHHHHHHHHHHHHHHHHhccCCccccchhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 886 567889999999999999999999998 899999999999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHcccCC-CccHHHHHHHHHHHHHhHHHHHHHHHhhhceeEeccccCCChhHHHHHHHHHHHHHhh
Q 001345 194 LGAQRETTQRQLNAEKKKRVE-GPRVESLNKRLSMTHKNITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILS 272 (1096)
Q Consensus 194 l~~~~~~~qrQleaEk~K~~~-~~r~e~l~~~~~e~~~~~e~ie~~i~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~ 272 (1096)
|+.+.++++||||+|++|.+. +.|+++|..+++++|+++++|++||++||++|||||||||+|+||++||++||.||.+
T Consensus 238 Ls~~~~~tskQleaEr~k~r~~rarle~Ll~~r~etqe~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~ 317 (1048)
T KOG2011|consen 238 LSSHNDKTSKQLEAERNKSRGNRARLESLLMLRKETQEQQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKS 317 (1048)
T ss_pred HHHhhHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHh
Confidence 999999999999999987654 4599999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHH
Q 001345 273 YPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLL 352 (1096)
Q Consensus 273 yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlveMa~D~D~~V~v~AI~Ll~~L~ 352 (1096)
||++|++++||||+||+|||++++||+.||++|++||.++++.++|++||+|||+|||||| |+|.+|+|.|++|+..+.
T Consensus 318 yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMa-drd~~~~Vrav~L~~~~~ 396 (1048)
T KOG2011|consen 318 YPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMA-DRDRNVSVRAVGLVLCLL 396 (1048)
T ss_pred ccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 888888888887777777
Q ss_pred h--cCCCCCCChhhHHhhhcCCChHHHHHHHHHHHHHHHHhhhcCcccCCCC-CCCCchhhhHhHHHHHHHhccCCCchh
Q 001345 353 R--HQLLPDDDLGPLYDLLIDDPPEIRRAIGELVYDHLIAQKFNSSQSGLKG-KDNDSSEVHLGRMLQILREFSADPILS 429 (1096)
Q Consensus 353 ~--~~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~~l~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~l~~f~~~~~~~ 429 (1096)
. .|+|+++||..||.||||.+|++|+|||+|++.++++...+....+++. .....+...+..++.++.++ ..|.++
T Consensus 397 ~~~~g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~k~~~~~a~~e~~~~~~~~~~~~~~~~l~~lv~~fi~~-~l~~~~ 475 (1048)
T KOG2011|consen 397 LSSSGLLSDKDILIVYSLIYDSNRRVAVAAGEFLYKKLFERVANSERVGAEKSLLKAENRELLPLLVSFFEES-ELHQHA 475 (1048)
T ss_pred HhcccccChhHHHHHHHHHhccCcchHHHHHHHHHHHhhccccchhhhccccccccccccchHHHHHHHhhhh-hhhhhH
Confidence 7 6999999999999999999999999999999999998654331111111 11122233344555555554 345678
Q ss_pred hhHHhhhcc-ccCCCCChHHHHHHHcCCCC--CCCCCchhhHHHHHHHHHHHHHH-hcCCCCCCCCCCCccchhhhhhhh
Q 001345 430 IYVIDDVWE-YMKAMKDWKCIISMLLDENP--LIDLNDDDATNLIRLLSASVKKA-VGERIVPASDNRKPYYNKAQKEVF 505 (1096)
Q Consensus 430 ~ylVDsLwd-~~~~lkDWe~m~~~LL~d~~--~~~L~~~~e~~LieiL~asVrqa-~ge~~~~~~~~Rk~~~~~~~k~~~ 505 (1096)
+|+||++|+ ....++||+||.++||.... +..+++.+++.|+|+|++++||+ .|++|+++.+++|...+.++.+.+
T Consensus 476 ~ylv~~l~ds~~~~lkDw~c~~s~ll~~~~~~~~~l~~~~~s~lie~m~~sirq~ae~e~~v~~~~n~k~~~S~ke~~~~ 555 (1048)
T KOG2011|consen 476 AYLVDSLFDSLDFLLKDWACMTSLLLDKLLPQGQELSSADESTLIEIMLNSIRQSAEGEPPVGRHQNSKNNLSAKEDADL 555 (1048)
T ss_pred HHHHHHHHHhhHHHhcccHHHHHhhcccccchhhhccchhhHHHHHHHHHHHHHHhcCCCCccccccccccccHHHHHHH
Confidence 999999999 56789999999999998853 34789999999999999999975 589999988888888899999899
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHhcCccchhHHHhhhhhcchhhhhccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 001345 506 ENNKREITRAMMKNYPRLLRKFMADKAKVPSLIDIVMHMKLELYSLKRDEKSFETILQLVNDAFFKHGEKEALRSCVKAI 585 (1096)
Q Consensus 506 ~~~~~~iT~~li~~LP~LL~Ky~ad~ekv~~LL~ip~~~dLe~Y~~~r~e~~l~~LL~~i~~~f~kHsd~~VL~~~a~al 585 (1096)
.+++.++|+++++.+|+|+.||++|.+++++|++||+||+++.|+.+|++++|.++++++..++.+|.+++|+++|+++|
T Consensus 556 ~e~r~~~t~~~~~~lp~Ll~k~~~d~~k~~nl~~i~~~~~l~~y~~~r~~~~l~a~~~~~~~~~~khle~~~l~sc~~~~ 635 (1048)
T KOG2011|consen 556 EEDRPDLTERLIENLPQLLSKYSADEEKSANLHLIPTHFSLEEYSLGRQEEHLRAASQQITDIIEKHLESEVLESCDKPY 635 (1048)
T ss_pred HHhhhhHHHHHHHHhHHHHhhhhhHHHhhhhHHhhhhhhhHHhhhhHhHHHHHHHHHHHHHHHhhhhccHHHHHHhcchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchh--hHHHHHHhhHHHHHHHHHHHHHHHHHH-hccCCchhHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhh
Q 001345 586 KFCSAESQG--ELQDSARKNLKDVEDKLIAKLKSAIKA-VLDGDDEYSLLVNLKRLYELQLSKAVPIESLYEDLVMILHT 662 (1096)
Q Consensus 586 ~~L~~~~~~--~l~~~a~~~l~~L~d~lv~~l~~~~~~-~~~~~~~~~ll~~L~Rl~~l~~~~~l~~~~l~~~l~~ll~~ 662 (1096)
+++|.++.. ..+++++.++.++.++..+.....+.. ..+++++|+++++++|++.|++.+++..|++|+.+...++.
T Consensus 636 ~~l~~~els~~~~~di~r~~~~dl~~~~~~~il~~f~~~~~~~~~~~~~l~~lk~~~~~q~~~~~~~~~l~~~l~~~l~e 715 (1048)
T KOG2011|consen 636 EFLCYEELSKITDKDIERSNLYDLFDTKYDKILDIFLLFIRDEDDEYAVLSRLKRLASFQNSIDLLKWDLFKALAESLHE 715 (1048)
T ss_pred HHHhhHHHhhhHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Confidence 999998443 457888887655555554443333222 33677899999999999999999999999999999999986
Q ss_pred --cCCCCHHHHHHHHHHHHHHHhhcccccccccCccHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccchhhhhhhHHH
Q 001345 663 --FRNLDNEVVSFLLLNLYLYLAWSLHSIINAETVSEASLASLLLKRNTLFEELEYFLNSPSEVEEGSRVGNQLACRVCT 740 (1096)
Q Consensus 663 --~~~l~~e~v~~al~~~~~~l~W~l~~l~~~~~~~~~~l~~L~~~r~~f~~~l~~~L~~~~~~~~~~~~~~~~~c~~~~ 740 (1096)
.+++|..++..+++++++.+.|.+..+..+..+.++.+..|+++++.++..|..++.-....++ ++++ .
T Consensus 716 ~~~~d~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~e~l~~f~~~~~~~~~l~~~~~~~~~~ev~--e~~~-------~ 786 (1048)
T KOG2011|consen 716 RINRDPQRCIILFKLQLLGNKLTYDLVKIKNGEVCGAEFLSELRSRSDSMFNLVDEYLEEVNMEVE--EQAV-------R 786 (1048)
T ss_pred hhccCchhhHHHHHHHHhhhhhhhhhhhhccCCCccHHHHHHHHHHhHHHHHHHHHHHHhhhhHHH--HHHH-------H
Confidence 4678999999999999999999999996567788999999999999999999999976222222 3444 4
Q ss_pred HHHHHHHHhhccCCCCc--ccccCcccCCHHHHHHHHHH-hhhhcccCCCcchhhhhHHHHHH-hhcHHHHHHHHHHHhh
Q 001345 741 ILAEMWCLFRMTNFSST--KLSRLGYCPDIPVLQKFWKL-CEQQLNISDETEDEDVNKEYIEE-TNRDAVMIAAAKLIAI 816 (1096)
Q Consensus 741 ~l~Dl~~lF~~~~~~~~--~l~~L~y~p~~~~~~~l~~~-~~~~~~~~d~~~d~~~~~e~ie~-~~RR~~La~~cKLi~~ 816 (1096)
..||++++|+.+...++ .++|++|.|+..++..+.+| ..++|...++++ ++...+||. |++|+++|+|||||+|
T Consensus 787 ~~~~~Lii~~~~~~~~~~~~~~~~v~k~~~~~~~~l~~f~~~~Vfi~~~~~~--~~~~~~Ie~~~~~r~~~a~~~~li~~ 864 (1048)
T KOG2011|consen 787 LGCDRLIIFKVQDMEGKIDGLEPLVFKPDKALVGQLRNFLLDLVFILFTSEN--TNECLKIEQLHKKRKLLASLAKLILE 864 (1048)
T ss_pred HHhhHHHHhhhhhcccchhccccceechHHHHHHhhhhHHHHHhhhhhcccc--hHHHHHHHHHHHhhhHHhHHHHHHHc
Confidence 45666788888887643 58999999999999999775 456666655433 233457887 5799999999999999
Q ss_pred CCCCCccccccccccccccCCChHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHHHHHHhccCCCCccchhhhHHHHHH
Q 001345 817 DSVPKEYLGPEIISHFVMHGTNVAEIVKHLITVLKKKD-EDVSTIFLEALKRAYQRHAVEISRSDDKSLTEKSFVECKEL 895 (1096)
Q Consensus 817 ~vv~~~~~Aa~i~~hY~k~y~d~gDIiK~tl~k~r~~~-~~~~~~l~~~L~~ly~~~~~~~~~~~~~~~~s~~f~~ikeL 895 (1096)
|++||+ +|++|||||++||++||||+|+|++++|+++ .+||+++.++|+++|. .++|+|
T Consensus 865 ~~~~~~-~a~~~fK~~~~~~~~~gd~~~~~l~k~r~i~~~~~~~~l~~~l~~~~~-------------------~~~~~l 924 (1048)
T KOG2011|consen 865 NKLPMM-EASDIFKMYEKFYNDYGDIIKETLSKAREIDKSEFAKTVDLSLETLFD-------------------TEIKEL 924 (1048)
T ss_pred ccccHH-HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------hHHHHH
Confidence 999995 9999999999999999999999999999996 9999999999999996 689999
Q ss_pred HhHhhccCCCcccccchHHHHHHHHhhccccccc-------cccccchHHhhHhhhccCCCcccHHHHHHHHHhhccCCC
Q 001345 896 SSRLSGTYVGAARNKHRSDILKTVKEGIDYAFLD-------APKQLSFLECAVLHFVSKLPTPDILDILKDVQIRTDNVN 968 (1096)
Q Consensus 896 ArRfaltf~G~d~~k~R~ai~~lHk~GI~FA~~~-------~P~nL~FLei~L~eFs~kLl~qDk~~vl~~l~~~~~~~~ 968 (1096)
|+|||++| |+|++|+|+||++|||+||.|||.. +|||+.|||| ++|||+| +|||+++++|++++.++++
T Consensus 925 a~r~~~~~-~~~~~~~r~ai~~~~k~~~~~~~~~~~~~~~~~~p~~~flei-l~e~s~k--~Qdkk~~~~~~~k~~~~~~ 1000 (1048)
T KOG2011|consen 925 AKRLALTF-GLDQLKNRFAIAVLHKKGILFALFKKDDDPSMEPPNLAFLEI-LSEFSNK--TQDKKAVLSYLEKIETDHM 1000 (1048)
T ss_pred HHHHHhhc-CHHHHhhHHHHHHHHhhcccceeecCCCCccCCCCCchHHHH-HHHhcch--hhhhhhHhhHHHhhccccC
Confidence 99999999 9999999999999999999999962 7999999999 7999999 9999999999999999999
Q ss_pred CCCCCCCcccHHHHHHHHhhh
Q 001345 969 MDEDPSGWRPFKSFVETLREK 989 (1096)
Q Consensus 969 ~~~~~~~W~Pl~~yr~sL~~~ 989 (1096)
+.++ +.|.|+.+|++||.+.
T Consensus 1001 ~~~~-~~~~p~~~~~~~l~~~ 1020 (1048)
T KOG2011|consen 1001 PTSR-DPWIPLTSYLNSLEEG 1020 (1048)
T ss_pred CCCC-CCCccccccccccccc
Confidence 8777 9999999999999763
No 2
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=100.00 E-value=6.6e-45 Score=415.61 Aligned_cols=504 Identities=21% Similarity=0.255 Sum_probs=345.1
Q ss_pred hhHHHHHhcCCCCHHHHHHHHHHHHhhCcHHHHHHHHHHHHHhcCCCcccCccccCCCCh-HHHHHHHHHHHhcCCc-cc
Q 001345 39 LSLIEVIKGNGKLIPQVVKLWVERYEKDAKPAIAELLTMLFEACGAKYYLQGESLDEIDV-DDVVVALVNLARRGEV-ED 116 (1096)
Q Consensus 39 ~~L~~~v~~~~~~i~~va~~Wie~Y~~d~~~Al~eLinfil~~~Gc~~~It~~~~~~~d~-~~ii~~l~e~~~~~~~-~~ 116 (1096)
+.+|--+...+...+.++..|.+.|.+|...++.+||||++.||||...|+..|+++.|. .+.+.+++--+..+.. +.
T Consensus 84 ~lff~~lldeDv~~e~lsvhwfedY~kn~~kfl~~lINf~L~ccGc~~rv~nfDVqd~dS~~eTLgqIqls~~r~k~fe~ 163 (740)
T COG5537 84 RLFFYELLDEDVIREILSVHWFEDYMKNLSKFLNSLINFDLSCCGCLTRVGNFDVQDYDSTYETLGQIQLSILRGKGFEV 163 (740)
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccccccccccccccccchHHHHHHHHHHHHhccccee
Confidence 344444556677899999999999999999999999999999999999999999986663 4666666655444332 22
Q ss_pred c---ccc--ccccchh---HHH--HHHHHHHHHHHhhccCCccchHhHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHH
Q 001345 117 Y---QSS--KRKELKN---FKD--NLVSFWDNLVVECQNGPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTS 186 (1096)
Q Consensus 117 y---~~s--k~k~~K~---Fr~--n~~eF~~~Lv~~~~~~~L~D~~lmd~l~~wL~~LS~S~vR~fRHTATl~aL~l~ta 186 (1096)
+ +.. |.+..+. |+. -+.+|+..++. ...+|.+.+|..+++|+.+||+|++|+||||||+++.-+|+-
T Consensus 164 ~lyly~eNfK~~~rd~~~~F~~~~llveFvs~~~v---~~~i~nss~~ld~~~W~~sms~st~r~~RhtaT~~c~liq~~ 240 (740)
T COG5537 164 VLYLYDENFKVRFRDVYQDFNIRALLVEFVSEWVV---SVGIFNSSCYLDYIGWALSMSNSTVRCFRHTATSCCRLIQKK 240 (740)
T ss_pred eeeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHhh---hceeecchHHHHHHHHHHhccCCceeeeehhhHHHHHHHHHH
Confidence 2 121 2122222 222 23334433332 246888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHcccCCCccHHHHHHHHHHHHHhHHHHHHHHHhhhceeEeccccCCChhHHHHHHHHH
Q 001345 187 FISVAKMLGAQRETTQRQLNAEKKKRVEGPRVESLNKRLSMTHKNITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSL 266 (1096)
Q Consensus 187 Lv~va~~l~~~~~~~qrQleaEk~K~~~~~r~e~l~~~~~e~~~~~e~ie~~i~~iF~~VFvhRyRDv~p~IR~~Ci~eL 266 (1096)
||..|..++ ||+++.+..++..++..+ +.+++++|+++||||||+||+|.||.+|+.+|
T Consensus 241 Lc~qa~~ls------------EKksR~ne~~l~~ln~sl---------~~d~i~dicdsvfvsRy~Dv~d~IRv~c~~~L 299 (740)
T COG5537 241 LCVQAFSLS------------EKKSRMNELALYDLNPSL---------IRDEIKDICDSVFVSRYIDVDDVIRVLCSMSL 299 (740)
T ss_pred HHHHHHHHH------------HHhhhHHHHHHHhhcchH---------HHHHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 999887554 355554444444444333 89999999999999999999999999999999
Q ss_pred HHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhc-ccCchhHHHHHH
Q 001345 267 GVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELA-DDIDVSVAVCAI 345 (1096)
Q Consensus 267 G~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlveMa-~D~D~~V~v~AI 345 (1096)
+.|+..+|++|++..||||+||+|+|.+..||+.+++.|..|+....+...++.|.+|||.||+||+ .|+|. ||+.+|
T Consensus 300 ~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~rILE~~r~D~d~-VRi~si 378 (740)
T COG5537 300 RDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKDRILEFLRTDSDC-VRICSI 378 (740)
T ss_pred HHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhccch-hhHHHH
Confidence 9999999999999999999999999999999999999999999887777899999999999999999 89999 999999
Q ss_pred HHHHHHHhcCCCCCCChhhHHhhhcCCChH---HHHHHHHHHHHH---HHHhhhcCccc-------CCCCCCCCc--hhh
Q 001345 346 GLVKQLLRHQLLPDDDLGPLYDLLIDDPPE---IRRAIGELVYDH---LIAQKFNSSQS-------GLKGKDNDS--SEV 410 (1096)
Q Consensus 346 ~Ll~~L~~~~~L~~ed~~~V~~Lvfd~~~~---Vr~AAg~fv~~~---l~~~~~~~~~~-------~~~~~~~~~--~~~ 410 (1096)
++|+.|+..|+|++.++..|..++||..|. .+..+.+++++. .+.++.+.... -.++-.... .+.
T Consensus 379 k~l~~lr~lg~L~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK~~aevikEKipl~~k~n~lL~a~~qgse~~f~v~~~ 458 (740)
T COG5537 379 KSLCYLRILGVLSSSEILIVSSCMLDIIPDSRENIVESVESICKIDAEVIKEKIPLATKTNRLLEAMKQGSERYFVVCEE 458 (740)
T ss_pred HHHHHHHHhcccchhHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhcchhhhhhhHHHHHHhhhhccchhHHH
Confidence 999999999999999999999999998888 444555554432 22222221110 000000000 111
Q ss_pred hHhHHHHHHHh-----------------ccCCCchhhhHHhhhcc---ccCCCCCh--HHHHHHHcCCCCCC------CC
Q 001345 411 HLGRMLQILRE-----------------FSADPILSIYVIDDVWE---YMKAMKDW--KCIISMLLDENPLI------DL 462 (1096)
Q Consensus 411 ~l~~l~~~l~~-----------------f~~~~~~~~ylVDsLwd---~~~~lkDW--e~m~~~LL~d~~~~------~L 462 (1096)
-..+++..+.. |....+...-.+.|+-. ......-| +-+..++|.|++.. .|
T Consensus 459 iFsr~~~llk~v~ls~easvy~~t~iR~f~~ng~f~~pii~s~l~~~~i~si~~te~~Ediakl~l~dnsD~eDvn~~el 538 (740)
T COG5537 459 IFSRFVHLLKKVELSFEASVYRITEIRRFFSNGEFTCPIIKSFLISEGIGSIHPTEVKEDIAKLRLMDNSDYEDVNGYEL 538 (740)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhcCceechhHHHHHHHhhcccccchhHHHHHHHHHhhccCcccccccccc
Confidence 12233322222 21111111122233322 22345889 88888889887531 12
Q ss_pred Cch----h-hHHHHHHHHHHHHHHhcCCCCCCCCCCCccchhhhhhhhhhhHHHHHHHHHHHhHHHHHHHh----cCccc
Q 001345 463 NDD----D-ATNLIRLLSASVKKAVGERIVPASDNRKPYYNKAQKEVFENNKREITRAMMKNYPRLLRKFM----ADKAK 533 (1096)
Q Consensus 463 ~~~----~-e~~LieiL~asVrqa~ge~~~~~~~~Rk~~~~~~~k~~~~~~~~~iT~~li~~LP~LL~Ky~----ad~ek 533 (1096)
.+. . .+.++=.=.++.--|.. +| .+ .+..+..+.-.+|.--||.|+.+|. .+|--
T Consensus 539 ~~t~np~~~~s~il~~~~~~~~~a~~--------n~-------p~-~r~~D~ve~~~~m~~~L~ali~s~~e~c~~~~~f 602 (740)
T COG5537 539 KDTANPAVLCSFILFFREKCIEFAVL--------NR-------PV-ERASDQVECFKVMYDRLSALIHSEAERCFVDPKF 602 (740)
T ss_pred ccccchHhhhhhHHHHHHHHHHHHhh--------CC-------ch-hhhhhhHHHHHHHHHHHHHHHHHHhhhccccHHH
Confidence 111 0 01111111111111110 11 11 1223444777788888999999887 46666
Q ss_pred hhHHHhhhhhcchhhhhccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Q 001345 534 VPSLIDIVMHMKLELYSLKRDEKSFETILQLVNDAFFKHGEKEALRSCVKAIKFC 588 (1096)
Q Consensus 534 v~~LL~ip~~~dLe~Y~~~r~e~~l~~LL~~i~~~f~kHsd~~VL~~~a~al~~L 588 (1096)
+..++++|--.=..-|. -+-|+.+.+++-++|..-++...---|.. +.|+
T Consensus 603 i~~~~~~~de~ly~~e~----~kif~k~~ke~~difnS~~~~~~~i~~~~-f~h~ 652 (740)
T COG5537 603 IISLFKLVDEGLYTDES----NKIFKKCGKELIDIFNSRSKSRMNIVSGY-FRHL 652 (740)
T ss_pred HHHHHhhhHhhchhhHH----HHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HHHH
Confidence 77777777554333222 24567777777778888877665554443 3344
No 3
>PF08514 STAG: STAG domain ; InterPro: IPR013721 STAG domain proteins are subunits of cohesin complex - a protein complex required for sister chromatid cohesion in eukaryotes. The STAG domain is present in Schizosaccharomyces pombe (Fission yeast) mitotic cohesin Psc3, and the meiosis specific cohesin Rec11. Many organisms express a meiosis-specific STAG protein, for example, mice and humans have a meiosis specific variant called STAG3, although budding yeast does not have a meiosis specific version [].
Probab=99.96 E-value=2.7e-29 Score=244.67 Aligned_cols=113 Identities=40% Similarity=0.655 Sum_probs=104.7
Q ss_pred ccc-cccccccchhHHHHHHHHHHHHHHhhccCCccchHhHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 001345 115 EDY-QSSKRKELKNFKDNLVSFWDNLVVECQNGPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFISVAKM 193 (1096)
Q Consensus 115 ~~y-~~sk~k~~K~Fr~n~~eF~~~Lv~~~~~~~L~D~~lmd~l~~wL~~LS~S~vR~fRHTATl~aL~l~taLv~va~~ 193 (1096)
++| +++++|.||+||+||++||+.||..|++++|||++||+++++||++||+|++||||||||++||+|+|+||+|+.+
T Consensus 4 ~~YPli~k~~~~k~Fr~~~~~F~~~lv~~~~~~~Lyd~~l~~~l~~wl~~lS~S~~R~fRhTaT~~~l~i~t~L~~v~~~ 83 (118)
T PF08514_consen 4 SDYPLISKGKKFKKFRKNFCEFFDQLVEQCHSSILYDDYLMDNLISWLTALSSSKVRPFRHTATLAALKIMTSLCDVAKS 83 (118)
T ss_pred ccCCCcCCCcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHhccCCceeehHHHHHHHHHHHHHHHHHHHH
Confidence 455 5788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHcccC-CCccHHHHHHHHHH
Q 001345 194 LGAQRETTQRQLNAEKKKRV-EGPRVESLNKRLSM 227 (1096)
Q Consensus 194 l~~~~~~~qrQleaEk~K~~-~~~r~e~l~~~~~e 227 (1096)
+..++++++|||++|++|++ ++.|+++|+++++|
T Consensus 84 l~~~~~~~~rQl~aE~~k~~~~~~r~~~l~~~i~~ 118 (118)
T PF08514_consen 84 LSEELEKTQRQLEAEKKKKRKNKSRLEELEQKIKE 118 (118)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHhcC
Confidence 99999999999999988765 45688888887754
No 4
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.08 E-value=0.0025 Score=67.05 Aligned_cols=93 Identities=29% Similarity=0.454 Sum_probs=76.3
Q ss_pred ChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhcc
Q 001345 255 DPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELAD 334 (1096)
Q Consensus 255 ~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlveMa~ 334 (1096)
+|.||.-++..||.....||... +.|+.++.=.|+|+++.||..|+..|..|..+. .+.-=+.+.. +++....
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~v--e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d-~ik~k~~l~~----~~l~~l~ 73 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLV--EPYLPNLYKCLRDEDPLVRKTALLVLSHLILED-MIKVKGQLFS----RILKLLV 73 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHH--HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC-ceeehhhhhH----HHHHHHc
Confidence 68999999999999999999765 679999999999999999999999999999753 2211122222 4455558
Q ss_pred cCchhHHHHHHHHHHHHHhc
Q 001345 335 DIDVSVAVCAIGLVKQLLRH 354 (1096)
Q Consensus 335 D~D~~V~v~AI~Ll~~L~~~ 354 (1096)
|.|++|+..|..++..+...
T Consensus 74 D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 74 DENPEIRSLARSFFSELLKK 93 (178)
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999998887
No 5
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.63 E-value=0.0063 Score=77.78 Aligned_cols=307 Identities=18% Similarity=0.112 Sum_probs=175.3
Q ss_pred HHHHHHHHhhccCCCCcccccCcccCCHHHHHHHHHHhhhhcccCCCcchhhhhHHHHHHhhc--HHHHHHHHHHHhhCC
Q 001345 741 ILAEMWCLFRMTNFSSTKLSRLGYCPDIPVLQKFWKLCEQQLNISDETEDEDVNKEYIEETNR--DAVMIAAAKLIAIDS 818 (1096)
Q Consensus 741 ~l~Dl~~lF~~~~~~~~~l~~L~y~p~~~~~~~l~~~~~~~~~~~d~~~d~~~~~e~ie~~~R--R~~La~~cKLi~~~v 818 (1096)
++..+++.|.........+.. .+.|....+.+|+..+...+...++.-.+ .+.+..|+..+ -.+| .|.++--..
T Consensus 726 ~l~~~~~~~~~~~~~~~~i~~-~~~~~~e~l~~f~~~~~~~~~l~~~~~~~-~~~ev~e~~~~~~~~~L--ii~~~~~~~ 801 (1048)
T KOG2011|consen 726 ILFKLQLLGNKLTYDLVKIKN-GEVCGAEFLSELRSRSDSMFNLVDEYLEE-VNMEVEEQAVRLGCDRL--IIFKVQDME 801 (1048)
T ss_pred HHHHHHHhhhhhhhhhhhhcc-CCCccHHHHHHHHHHhHHHHHHHHHHHHh-hhhHHHHHHHHHHhhHH--HHhhhhhcc
Confidence 344445555443333333333 88999999999988777666555432222 22334444322 2222 334444444
Q ss_pred CCCccccccccccccccCCChHHHHHHHHHHHHhc-c-hhHHHHHHHHHHHH----HHHHHHHhcc-CCCCccchhhhHH
Q 001345 819 VPKEYLGPEIISHFVMHGTNVAEIVKHLITVLKKK-D-EDVSTIFLEALKRA----YQRHAVEISR-SDDKSLTEKSFVE 891 (1096)
Q Consensus 819 v~~~~~Aa~i~~hY~k~y~d~gDIiK~tl~k~r~~-~-~~~~~~l~~~L~~l----y~~~~~~~~~-~~~~~~~s~~f~~ 891 (1096)
.+....++.||++=.....-.+-++.......+.. + -++-.+-..+.+.. |.+...++.. -...+..-..+..
T Consensus 802 ~~~~~~~~~v~k~~~~~~~~l~~f~~~~Vfi~~~~~~~~~~~~Ie~~~~~r~~~a~~~~li~~~~~~~~~a~~~fK~~~~ 881 (1048)
T KOG2011|consen 802 GKIDGLEPLVFKPDKALVGQLRNFLLDLVFILFTSENTNECLKIEQLHKKRKLLASLAKLILENKLPMMEASDIFKMYEK 881 (1048)
T ss_pred cchhccccceechHHHHHHhhhhHHHHHhhhhhcccchHHHHHHHHHHHhhhHHhHHHHHHHcccccHHHHHHHHHHHHH
Confidence 45555778888766554444444444433333332 1 11111111111111 1111111000 0000001122222
Q ss_pred HHHHHhHh-hccCCCcccccchHHHHHHHHhhccccccccccccchHHhhHhhhccCCCcccHHHHHHHHHhhccCCCCC
Q 001345 892 CKELSSRL-SGTYVGAARNKHRSDILKTVKEGIDYAFLDAPKQLSFLECAVLHFVSKLPTPDILDILKDVQIRTDNVNMD 970 (1096)
Q Consensus 892 ikeLArRf-altf~G~d~~k~R~ai~~lHk~GI~FA~~~~P~nL~FLei~L~eFs~kLl~qDk~~vl~~l~~~~~~~~~~ 970 (1096)
...+..=. ..|+ |.-....+--.++-...+..++|...|..|++..+++-.|=-..-+-+...+++--..+.-... +
T Consensus 882 ~~~~~gd~~~~~l-~k~r~i~~~~~~~~l~~~l~~~~~~~~~~la~r~~~~~~~~~~~~r~ai~~~~k~~~~~~~~~~-~ 959 (1048)
T KOG2011|consen 882 FYNDYGDIIKETL-SKAREIDKSEFAKTVDLSLETLFDTEIKELAKRLALTFGLDQLKNRFAIAVLHKKGILFALFKK-D 959 (1048)
T ss_pred HHHHhccchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCHHHHhhHHHHHHHHhhcccceeecC-C
Confidence 22222222 3455 7777778888888888888888887788888888754333333334455555555544443334 5
Q ss_pred CCCCCcccHHHHHHHHhhhhcCCCCchhhhhhhcccccCCCCCCccccCccccccCCCccccccccccccccccccccch
Q 001345 971 EDPSGWRPFKSFVETLREKYTKNEGIQEEKEAVTVRRRGRPRKKRNIEGKRLFDEHSSSEEEDSISASDQEVAQDEDDKQ 1050 (1096)
Q Consensus 971 ~~~~~W~Pl~~yr~sL~~~~~~~e~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1050 (1096)
.++..|.|=..|.+-|.+++.+ .|++|...+..++++|++++-.. +..++..+..+.-+++|+.+..
T Consensus 960 ~~~~~~~p~~~fleil~e~s~k---~Qdkk~~~~~~~k~~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~~~--------- 1026 (1048)
T KOG2011|consen 960 DDPSMEPPNLAFLEILSEFSNK---TQDKKAVLSYLEKIETDHMPTSR-DPWIPLTSYLNSLEEGSQDDSM--------- 1026 (1048)
T ss_pred CCccCCCCCchHHHHHHHhcch---hhhhhhHhhHHHhhccccCCCCC-CCCcccccccccccccCCCCcc---------
Confidence 7899999999999999998888 89999999999999999988877 9999999888544444433322
Q ss_pred hhhhccccchhhhccch
Q 001345 1051 EEEEEDEAPLIHSIRSS 1067 (1096)
Q Consensus 1051 ~~~~~~~~~~~~~~~~~ 1067 (1096)
...-+ ..|.+.+||++
T Consensus 1027 ~~~~~-~~~~~~~~~~~ 1042 (1048)
T KOG2011|consen 1027 SAPSG-HSTVVDTIRSA 1042 (1048)
T ss_pred ccccC-Ccchhhhhccc
Confidence 22334 88999999944
No 6
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=96.19 E-value=0.0053 Score=73.55 Aligned_cols=129 Identities=26% Similarity=0.448 Sum_probs=85.7
Q ss_pred HHHHHhhhceeEeccccCC--ChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHH--HHHHHHHHhhhhc
Q 001345 236 EDMMRKIFTGLFVHRYRDI--DPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVR--KSSVLALQNLYEV 311 (1096)
Q Consensus 236 e~~i~~iF~~VFvhRyRDv--~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR--~~~L~aL~~Ly~~ 311 (1096)
-++...+++..|-.|.||+ +-.||..|++-...|-..- ..|=..-||.|+||.+++++..+| --.......++-.
T Consensus 161 fe~~lyly~eNfK~~~rd~~~~F~~~~llveFvs~~~v~~-~i~nss~~ld~~~W~~sms~st~r~~RhtaT~~c~liq~ 239 (740)
T COG5537 161 FEVVLYLYDENFKVRFRDVYQDFNIRALLVEFVSEWVVSV-GIFNSSCYLDYIGWALSMSNSTVRCFRHTATSCCRLIQK 239 (740)
T ss_pred ceeeeeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc-eeecchHHHHHHHHHHhccCCceeeeehhhHHHHHHHHH
Confidence 3456677888888888888 5689999999999998776 445567799999999999999998 2222222222210
Q ss_pred CCCcccHHHH-HHHHHHHHhhhc-ccCchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhc-----CCChHHHHHHHHHH
Q 001345 312 DDNVPTLGLF-TERFSNRMIELA-DDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLI-----DDPPEIRRAIGELV 384 (1096)
Q Consensus 312 ~~~~~~L~lF-t~RFk~RlveMa-~D~D~~V~v~AI~Ll~~L~~~~~L~~ed~~~V~~Lvf-----d~~~~Vr~AAg~fv 384 (1096)
. -....| .+++|.|+.+.+ .|-.++. ++ +.++.++..+| |-.+.||..+..-+
T Consensus 240 --~-Lc~qa~~lsEKksR~ne~~l~~ln~sl-------~~----------d~i~dicdsvfvsRy~Dv~d~IRv~c~~~L 299 (740)
T COG5537 240 --K-LCVQAFSLSEKKSRMNELALYDLNPSL-------IR----------DEIKDICDSVFVSRYIDVDDVIRVLCSMSL 299 (740)
T ss_pred --H-HHHHHHHHHHHhhhHHHHHHHhhcchH-------HH----------HHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 0 012345 788999999999 5666655 11 12233444444 66777777776543
Q ss_pred H
Q 001345 385 Y 385 (1096)
Q Consensus 385 ~ 385 (1096)
+
T Consensus 300 ~ 300 (740)
T COG5537 300 R 300 (740)
T ss_pred H
Confidence 3
No 7
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.09 E-value=0.14 Score=53.81 Aligned_cols=88 Identities=22% Similarity=0.317 Sum_probs=73.5
Q ss_pred ChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhcCCCCCCCh--hhHHhhhcC
Q 001345 294 SASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDL--GPLYDLLID 371 (1096)
Q Consensus 294 ~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlveMa~D~D~~V~v~AI~Ll~~L~~~~~L~~ed~--~~V~~Lvfd 371 (1096)
++.||..++-+|..|.-. -..+.+++-+.|..+-.|.|+.||..|+.+++.|...|++-.++. ..+..++-|
T Consensus 1 ~~~vR~n~i~~l~DL~~r------~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D 74 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIR------YPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVD 74 (178)
T ss_pred CHHHHHHHHHHHHHHHHh------CcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcC
Confidence 578999999999988742 224556677788888899999999999999999999998877654 577788899
Q ss_pred CChHHHHHHHHHHHHH
Q 001345 372 DPPEIRRAIGELVYDH 387 (1096)
Q Consensus 372 ~~~~Vr~AAg~fv~~~ 387 (1096)
+++.||..|..|+.+-
T Consensus 75 ~~~~Ir~~A~~~~~e~ 90 (178)
T PF12717_consen 75 ENPEIRSLARSFFSEL 90 (178)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999998763
No 8
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=96.08 E-value=0.33 Score=58.90 Aligned_cols=129 Identities=18% Similarity=0.234 Sum_probs=100.1
Q ss_pred CCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhh
Q 001345 253 DIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIEL 332 (1096)
Q Consensus 253 Dv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlveM 332 (1096)
|-.|.+|...+..+..-...+|+.+-.. ++..+..+|.|+++.|+..++..+..+ +.++.. ...+...+-.+|..+
T Consensus 125 ~~~~~VRk~A~~~l~~i~~~~p~~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~--~~~~~~~~~~~L~~~ 200 (526)
T PF01602_consen 125 DPSPYVRKKAALALLKIYRKDPDLVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDS--YKSLIPKLIRILCQL 200 (526)
T ss_dssp SSSHHHHHHHHHHHHHHHHHCHCCHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHH--HTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhccCHHHHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcch--hhhhHHHHHHHhhhc
Confidence 6789999999999999999999988666 999999999999999999999999999 322111 115566666778888
Q ss_pred cccCchhHHHHHHHHHHHHHhcCCCCC---CChhhHHhhhcCCChHHHHHHHHHHH
Q 001345 333 ADDIDVSVAVCAIGLVKQLLRHQLLPD---DDLGPLYDLLIDDPPEIRRAIGELVY 385 (1096)
Q Consensus 333 a~D~D~~V~v~AI~Ll~~L~~~~~L~~---ed~~~V~~Lvfd~~~~Vr~AAg~fv~ 385 (1096)
..+.++-+.+.+++++..+.....-.+ .-+..+..++.+.++.|.-+|..++.
T Consensus 201 l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~ 256 (526)
T PF01602_consen 201 LSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLII 256 (526)
T ss_dssp HTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 788899999999998876655432222 12356666777888888888888766
No 9
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.21 E-value=0.48 Score=51.19 Aligned_cols=107 Identities=21% Similarity=0.252 Sum_probs=78.4
Q ss_pred eEeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCC-CcccH--HHHH
Q 001345 246 LFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDD-NVPTL--GLFT 322 (1096)
Q Consensus 246 VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~-~~~~L--~lFt 322 (1096)
..+.|.-|.-.-||..+...|..++..+| +...-.+.++.-.+.+|++.||..|+.-|..+...-. ..+.+ ..++
T Consensus 98 ~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~ 175 (228)
T PF12348_consen 98 PLLKKLGDSKKFIREAANNALDAIIESCS--YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFL 175 (228)
T ss_dssp HHHHGGG---HHHHHHHHHHHHHHHTTS---H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHH
T ss_pred HHHHHHccccHHHHHHHHHHHHHHHHHCC--cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchH
Confidence 45577888888999999999999999888 3333347888999999999999999999999886432 22334 3356
Q ss_pred HHHHHHHhhhcccCchhHHHHHHHHHHHHHhc
Q 001345 323 ERFSNRMIELADDIDVSVAVCAIGLVKQLLRH 354 (1096)
Q Consensus 323 ~RFk~RlveMa~D~D~~V~v~AI~Ll~~L~~~ 354 (1096)
..+.+-|+.+..|.+++||..|-+++..+.++
T Consensus 176 ~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 176 KQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 77887888888999999999999999999876
No 10
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=94.96 E-value=0.13 Score=46.81 Aligned_cols=77 Identities=26% Similarity=0.258 Sum_probs=61.8
Q ss_pred cCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhh
Q 001345 252 RDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIE 331 (1096)
Q Consensus 252 RDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~Rlve 331 (1096)
.|-+|.+|...+..|| .+-++.-+.+|-.+|.|+++.||..++.+|..+- +.+-.+-|++
T Consensus 10 ~~~~~~vr~~a~~~L~--------~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~------------~~~~~~~L~~ 69 (88)
T PF13646_consen 10 NDPDPQVRAEAARALG--------ELGDPEAIPALIELLKDEDPMVRRAAARALGRIG------------DPEAIPALIK 69 (88)
T ss_dssp TSSSHHHHHHHHHHHH--------CCTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH------------HHHTHHHHHH
T ss_pred cCCCHHHHHHHHHHHH--------HcCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC------------CHHHHHHHHH
Confidence 6889999999999999 2234467899999999999999999999999872 3445667778
Q ss_pred hc-ccCchhHHHHHHHHH
Q 001345 332 LA-DDIDVSVAVCAIGLV 348 (1096)
Q Consensus 332 Ma-~D~D~~V~v~AI~Ll 348 (1096)
|. .|.+..|+..|+.-|
T Consensus 70 ~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 70 LLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHTC-SSHHHHHHHHHHH
T ss_pred HHcCCCcHHHHHHHHhhc
Confidence 88 567778899888755
No 11
>PRK09687 putative lyase; Provisional
Probab=94.45 E-value=0.16 Score=57.51 Aligned_cols=118 Identities=20% Similarity=0.109 Sum_probs=83.9
Q ss_pred ccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHh
Q 001345 251 YRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMI 330 (1096)
Q Consensus 251 yRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~Rlv 330 (1096)
..|-+|.+|..++..||.- ....... ....+.-+.-+++|+++.||..++.+|..+= +++ =-+-|+
T Consensus 100 ~~D~d~~VR~~A~~aLG~~-~~~~~~~-~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~-~~~-----------ai~~L~ 165 (280)
T PRK09687 100 LEDKSACVRASAINATGHR-CKKNPLY-SPKIVEQSQITAFDKSTNVRFAVAFALSVIN-DEA-----------AIPLLI 165 (280)
T ss_pred hcCCCHHHHHHHHHHHhcc-ccccccc-chHHHHHHHHHhhCCCHHHHHHHHHHHhccC-CHH-----------HHHHHH
Confidence 4899999999999999952 1111001 2233455667789999999999999996552 222 224567
Q ss_pred hhcccCchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcCCChHHHHHHHHHHH
Q 001345 331 ELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVY 385 (1096)
Q Consensus 331 eMa~D~D~~V~v~AI~Ll~~L~~~~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~ 385 (1096)
.+..|.|+.|+..|+.-|..+ +.=+++=.+.+..++-|.++.||.+|+..+-
T Consensus 166 ~~L~d~~~~VR~~A~~aLg~~---~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg 217 (280)
T PRK09687 166 NLLKDPNGDVRNWAAFALNSN---KYDNPDIREAFVAMLQDKNEEIRIEAIIGLA 217 (280)
T ss_pred HHhcCCCHHHHHHHHHHHhcC---CCCCHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 777899999999999888877 2114444567888888999999999988764
No 12
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.08 E-value=0.18 Score=66.27 Aligned_cols=138 Identities=21% Similarity=0.309 Sum_probs=107.7
Q ss_pred EeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhH--HHHHHHHHHhhhh-------c--CC--
Q 001345 247 FVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASV--RKSSVLALQNLYE-------V--DD-- 313 (1096)
Q Consensus 247 FvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~V--R~~~L~aL~~Ly~-------~--~~-- 313 (1096)
|..|+.| -+||.--+..||.....+|.+|....-++-+--.|+|.+..+ +..|++.+.-..- + .+
T Consensus 1232 ~f~k~~~--~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~ila~~n~~~~~ki~~l~n~~~yL~eee~~l~~~~~~w~ 1309 (1692)
T KOG1020|consen 1232 YFSKDKD--GELRRKALINLGFICIQHPSLFTSREVLNLYDEILADDNSDIKSKIQLLQNLELYLLEEEKKLRNKGKNWT 1309 (1692)
T ss_pred HHHHhhh--hHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhcccchh
Confidence 5567777 899999999999999999999999999999999999977665 5666666554330 0 00
Q ss_pred -------------------CcccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhcCCCCCCChhh-HHhhhcCCC
Q 001345 314 -------------------NVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGP-LYDLLIDDP 373 (1096)
Q Consensus 314 -------------------~~~~L~lFt~RFk~RlveMa~D~D~~V~v~AI~Ll~~L~~~~~L~~ed~~~-V~~Lvfd~~ 373 (1096)
..+.+.--.++|-+.|++-|.|.|..||..||+++..+++.|+..|-.|-+ +..|--|..
T Consensus 1310 ~~~k~edlkem~~v~sg~~s~~~~~~i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~QGLVhP~~cvPtLIAL~Tdp~ 1389 (1692)
T KOG1020|consen 1310 KSNKSEDLKEMLDVSSGMGSSDGVSAIMQLFLDNILESCLDRDLQVRLVAIKVLKLILNQGLVHPVHCVPTLIALETDPS 1389 (1692)
T ss_pred hhhhHHHHHhhcccccccccccchHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccCCCccchhhhheeecCChH
Confidence 001123367799999999999999999999999999999999999988753 334444778
Q ss_pred hHHHHHHHHHHHH
Q 001345 374 PEIRRAIGELVYD 386 (1096)
Q Consensus 374 ~~Vr~AAg~fv~~ 386 (1096)
+.+|+-|-.++.+
T Consensus 1390 ~~~r~~Ad~LL~e 1402 (1692)
T KOG1020|consen 1390 QAIRHVADELLKE 1402 (1692)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888777543
No 13
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=93.84 E-value=0.31 Score=63.79 Aligned_cols=48 Identities=27% Similarity=0.320 Sum_probs=22.4
Q ss_pred CCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhh
Q 001345 253 DIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNL 308 (1096)
Q Consensus 253 Dv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~L 308 (1096)
|-+|.+|..++..||.+- .+..+.-|--.|.|++..||..++.+|..+
T Consensus 632 D~d~~VR~~Av~~L~~~~--------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l 679 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETT--------PPGFGPALVAALGDGAAAVRRAAAEGLREL 679 (897)
T ss_pred CCCHHHHHHHHHHHhhhc--------chhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 555555555555555321 222334444444555555555555555444
No 14
>PRK09687 putative lyase; Provisional
Probab=93.70 E-value=0.33 Score=54.99 Aligned_cols=119 Identities=19% Similarity=0.123 Sum_probs=71.0
Q ss_pred CCChhHHHHHHHHHHHHHhhCccccccchhhhhhh-hhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhh
Q 001345 253 DIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLG-WTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIE 331 (1096)
Q Consensus 253 Dv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlG-W~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~Rlve 331 (1096)
|-+|.+|...+..||. |..-+.. .+..+..|. ++++|+++.||..++.+|-.+...... . ..++..-+..
T Consensus 65 ~~d~~vR~~A~~aLg~-lg~~~~~--~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~-~-----~~~a~~~l~~ 135 (280)
T PRK09687 65 SKNPIERDIGADILSQ-LGMAKRC--QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPL-Y-----SPKIVEQSQI 135 (280)
T ss_pred CCCHHHHHHHHHHHHh-cCCCccc--hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccc-c-----chHHHHHHHH
Confidence 5677888887777775 2111110 223455555 457788888888888887776422110 1 2234444556
Q ss_pred hcccCchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcCCChHHHHHHHHHHH
Q 001345 332 LADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVY 385 (1096)
Q Consensus 332 Ma~D~D~~V~v~AI~Ll~~L~~~~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~ 385 (1096)
+..|.|..||..|+.-|..+ + +++-++.+..++-|.++.||.+|+.-+-
T Consensus 136 ~~~D~~~~VR~~a~~aLg~~---~--~~~ai~~L~~~L~d~~~~VR~~A~~aLg 184 (280)
T PRK09687 136 TAFDKSTNVRFAVAFALSVI---N--DEAAIPLLINLLKDPNGDVRNWAAFALN 184 (280)
T ss_pred HhhCCCHHHHHHHHHHHhcc---C--CHHHHHHHHHHhcCCCHHHHHHHHHHHh
Confidence 66777888887777766332 1 2334556667777777777777776654
No 15
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=93.68 E-value=0.22 Score=65.14 Aligned_cols=117 Identities=16% Similarity=0.064 Sum_probs=86.8
Q ss_pred eccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHH
Q 001345 248 VHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSN 327 (1096)
Q Consensus 248 vhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~ 327 (1096)
...-.|-+|+||......||.==...+ .-+..|.-+|.|.++.||..++.+|..+...+... .
T Consensus 748 ~~~l~D~~~~VR~~aa~aL~~~~~~~~------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~-----------~ 810 (897)
T PRK13800 748 AGAATDENREVRIAVAKGLATLGAGGA------PAGDAVRALTGDPDPLVRAAALAALAELGCPPDDV-----------A 810 (897)
T ss_pred HHHhcCCCHHHHHHHHHHHHHhccccc------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhH-----------H
Confidence 456889999999999999984211111 12455667789999999999999999986432211 3
Q ss_pred HHhhhcccCchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcCCChHHHHHHHHHHHH
Q 001345 328 RMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVYD 386 (1096)
Q Consensus 328 RlveMa~D~D~~V~v~AI~Ll~~L~~~~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~ 386 (1096)
.++.+..|.|+.||..|++.|..+- +++-...+..++-|.++.||++|+.-+-.
T Consensus 811 ~l~~aL~d~d~~VR~~Aa~aL~~l~-----~~~a~~~L~~~L~D~~~~VR~~A~~aL~~ 864 (897)
T PRK13800 811 AATAALRASAWQVRQGAARALAGAA-----ADVAVPALVEALTDPHLDVRKAAVLALTR 864 (897)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhcc-----ccchHHHHHHHhcCCCHHHHHHHHHHHhc
Confidence 4666678999999999999886542 33445788888889999999999987654
No 16
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.95 E-value=0.39 Score=62.12 Aligned_cols=156 Identities=23% Similarity=0.335 Sum_probs=116.4
Q ss_pred HhhccCCccc-hHhHHHHHHHHHhcCCCCCC----cchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcccCCC
Q 001345 141 VECQNGPLFD-KVLFDKCMDYIIALSCTPPR----VYRQVASLMGLQLVTSFISVAKMLGAQRETTQRQLNAEKKKRVEG 215 (1096)
Q Consensus 141 ~~~~~~~L~D-~~lmd~l~~wL~~LS~S~vR----~fRHTATl~aL~l~taLv~va~~l~~~~~~~qrQleaEk~K~~~~ 215 (1096)
-.|..-.||. ..+|..+..++.-.+..+.+ -++|+||++--++|.- +...
T Consensus 903 ~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~i--------Sa~f----------------- 957 (1251)
T KOG0414|consen 903 GICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCI--------SAEF----------------- 957 (1251)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhh--------hHHH-----------------
Confidence 3455566776 67999999999877754444 3899999998888731 1100
Q ss_pred ccHHHHHHHHHHHHHhHHHHHHHHHhhhceeEeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCCh
Q 001345 216 PRVESLNKRLSMTHKNITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSA 295 (1096)
Q Consensus 216 ~r~e~l~~~~~e~~~~~e~ie~~i~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~ 295 (1096)
++.+...+-.+|.. =-.|-||+-|+-+||.....||..+ +.+--|+.-.|.|.++
T Consensus 958 ------------ces~l~llftimek-----------sp~p~IRsN~VvalgDlav~fpnli--e~~T~~Ly~rL~D~~~ 1012 (1251)
T KOG0414|consen 958 ------------CESHLPLLFTIMEK-----------SPSPRIRSNLVVALGDLAVRFPNLI--EPWTEHLYRRLRDESP 1012 (1251)
T ss_pred ------------HHHHHHHHHHHHhc-----------CCCceeeecchheccchhhhccccc--chhhHHHHHHhcCccH
Confidence 11112223333331 2468899999999999999999876 4577899999999999
Q ss_pred hHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhc---ccCchhHHHHHHHHHHHHHhcC
Q 001345 296 SVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELA---DDIDVSVAVCAIGLVKQLLRHQ 355 (1096)
Q Consensus 296 ~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlveMa---~D~D~~V~v~AI~Ll~~L~~~~ 355 (1096)
.||..|+..|..|.-++ .+ |-|..+-+|| -|-+.+++-.|=.....|...|
T Consensus 1013 ~vRkta~lvlshLILnd-mi--------KVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~ 1066 (1251)
T KOG0414|consen 1013 SVRKTALLVLSHLILND-MI--------KVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKG 1066 (1251)
T ss_pred HHHHHHHHHHHHHHHhh-hh--------HhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcc
Confidence 99999999999998653 21 3677888898 4999999999998888888876
No 17
>PTZ00429 beta-adaptin; Provisional
Probab=92.77 E-value=0.25 Score=62.93 Aligned_cols=99 Identities=20% Similarity=0.286 Sum_probs=75.7
Q ss_pred eccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcC-CCcccHHHHHHHHH
Q 001345 248 VHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVD-DNVPTLGLFTERFS 326 (1096)
Q Consensus 248 vhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~-~~~~~L~lFt~RFk 326 (1096)
..-..|-+|-||+..+..||.- ..|+ +-+.-+..+.-.|.|+++-||.+|+-++.+||... +... -.+|.
T Consensus 111 ~KDl~d~Np~IRaLALRtLs~I--r~~~--i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~-----~~~~~ 181 (746)
T PTZ00429 111 LQDTTNSSPVVRALAVRTMMCI--RVSS--VLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFY-----QQDFK 181 (746)
T ss_pred HHHcCCCCHHHHHHHHHHHHcC--CcHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCccccc-----ccchH
Confidence 3445688999999999999952 1222 22234466688899999999999999999999743 3221 12366
Q ss_pred HHHhhhcccCchhHHHHHHHHHHHHHhcC
Q 001345 327 NRMIELADDIDVSVAVCAIGLVKQLLRHQ 355 (1096)
Q Consensus 327 ~RlveMa~D~D~~V~v~AI~Ll~~L~~~~ 355 (1096)
++|.+|..|.|+.|...|+.+|..|.+.+
T Consensus 182 ~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~ 210 (746)
T PTZ00429 182 KDLVELLNDNNPVVASNAAAIVCEVNDYG 210 (746)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHHhC
Confidence 78888889999999999999999998764
No 18
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=92.50 E-value=0.47 Score=44.86 Aligned_cols=97 Identities=18% Similarity=0.125 Sum_probs=77.8
Q ss_pred CChhHHHHHHHHHHHHHhh---CccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHH-HHHHHHH
Q 001345 254 IDPNIRMSCIQSLGVWILS---YPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFT-ERFSNRM 329 (1096)
Q Consensus 254 v~p~IR~~Ci~eLG~Wi~~---yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt-~RFk~Rl 329 (1096)
-++++|..++..|+.-... +...|++...+.++--.|+|+++.||..++.+|..|-.+.. .....+. .-+-+.+
T Consensus 19 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~g~l~~l 96 (120)
T cd00020 19 SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE--DNKLIVLEAGGVPKL 96 (120)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH--HHHHHHHHCCChHHH
Confidence 3489999999999986643 45678888999999999999999999999999999986542 2222222 3367788
Q ss_pred hhhcccCchhHHHHHHHHHHHHH
Q 001345 330 IELADDIDVSVAVCAIGLVKQLL 352 (1096)
Q Consensus 330 veMa~D~D~~V~v~AI~Ll~~L~ 352 (1096)
++...+.|..|+..|+.++..|.
T Consensus 97 ~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 97 VNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhh
Confidence 88888889999999999988764
No 19
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=92.05 E-value=0.4 Score=51.07 Aligned_cols=65 Identities=25% Similarity=0.353 Sum_probs=58.4
Q ss_pred HHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhcCCCCCCChh-hHHhhhcCCChHHHHHHHHHHH
Q 001345 321 FTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLG-PLYDLLIDDPPEIRRAIGELVY 385 (1096)
Q Consensus 321 Ft~RFk~RlveMa~D~D~~V~v~AI~Ll~~L~~~~~L~~ed~~-~V~~Lvfd~~~~Vr~AAg~fv~ 385 (1096)
-.+||-++|+++|.+.|..||..|++++..+.+.|+..|.+|- .+..|.-|.++.||+.|-..+.
T Consensus 5 l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~ 70 (187)
T PF12830_consen 5 LVQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLK 70 (187)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHH
Confidence 4679999999999999999999999999999999999999886 5567888999999999987653
No 20
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=91.04 E-value=1.1 Score=42.39 Aligned_cols=107 Identities=19% Similarity=0.181 Sum_probs=78.5
Q ss_pred cccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHH-HHHHHHhhhcccCchhHHHHHHHHHHHHHhcC
Q 001345 277 FLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTE-RFSNRMIELADDIDVSVAVCAIGLVKQLLRHQ 355 (1096)
Q Consensus 277 FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~-RFk~RlveMa~D~D~~V~v~AI~Ll~~L~~~~ 355 (1096)
|.+...+.++--.|.|.+..+|..++.+|..+....+ .....|.+ .+-+.++.+..|.|+.|+..|+..|..|...+
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~--~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNN--DNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCH--HHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 4455677888888999999999999999999987521 22333343 67788888888899999999999999998764
Q ss_pred ------CCCCCChhhHHhhhcCCChHHHHHHHHHHH
Q 001345 356 ------LLPDDDLGPLYDLLIDDPPEIRRAIGELVY 385 (1096)
Q Consensus 356 ------~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~ 385 (1096)
+....-+..+.+++-+.+..++..|..++.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~ 116 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALS 116 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHH
Confidence 112223445566666677777777776654
No 21
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=90.83 E-value=0.47 Score=43.07 Aligned_cols=77 Identities=30% Similarity=0.317 Sum_probs=58.3
Q ss_pred hc-CCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhcCCCCCCChhhHHh
Q 001345 289 TL-NDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYD 367 (1096)
Q Consensus 289 ~L-~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlveMa~D~D~~V~v~AI~Ll~~L~~~~~L~~ed~~~V~~ 367 (1096)
.| +|+++.||..++..|..+-. .+.-+.|++++.|.|+.|+..|+.-|..|- +++-++.+.+
T Consensus 7 ~l~~~~~~~vr~~a~~~L~~~~~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-----~~~~~~~L~~ 69 (88)
T PF13646_consen 7 LLQNDPDPQVRAEAARALGELGD------------PEAIPALIELLKDEDPMVRRAAARALGRIG-----DPEAIPALIK 69 (88)
T ss_dssp HHHTSSSHHHHHHHHHHHHCCTH------------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-----HHHTHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHcCC------------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----CHHHHHHHHH
Confidence 34 89999999999999995532 145778888889999999999999888663 3445667777
Q ss_pred hhcCC-ChHHHHHHHH
Q 001345 368 LLIDD-PPEIRRAIGE 382 (1096)
Q Consensus 368 Lvfd~-~~~Vr~AAg~ 382 (1096)
++.++ +..||.+|..
T Consensus 70 ~l~~~~~~~vr~~a~~ 85 (88)
T PF13646_consen 70 LLQDDDDEVVREAAAE 85 (88)
T ss_dssp HHTC-SSHHHHHHHHH
T ss_pred HHcCCCcHHHHHHHHh
Confidence 77664 5566777764
No 22
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=90.02 E-value=2.4 Score=52.07 Aligned_cols=98 Identities=21% Similarity=0.213 Sum_probs=80.2
Q ss_pred ChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHH-HHHHHHHhhhc
Q 001345 255 DPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFT-ERFSNRMIELA 333 (1096)
Q Consensus 255 ~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt-~RFk~RlveMa 333 (1096)
.++.=..|+.-|+.++...+-..+.++|..+|--.|.-+++.||.-++++|.++-.+++. ....+. .-.-+.++...
T Consensus 51 ~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~--~~~~~~~~~l~~~i~~~L 128 (503)
T PF10508_consen 51 NREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEG--AAQLLVDNELLPLIIQCL 128 (503)
T ss_pred ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHH--HHHHhcCccHHHHHHHHH
Confidence 556667888999999999988888999999999999999999999999999998765432 222221 12344677777
Q ss_pred ccCchhHHHHHHHHHHHHHhc
Q 001345 334 DDIDVSVAVCAIGLVKQLLRH 354 (1096)
Q Consensus 334 ~D~D~~V~v~AI~Ll~~L~~~ 354 (1096)
.|.|.+|+..|+++|..|.++
T Consensus 129 ~~~d~~Va~~A~~~L~~l~~~ 149 (503)
T PF10508_consen 129 RDPDLSVAKAAIKALKKLASH 149 (503)
T ss_pred cCCcHHHHHHHHHHHHHHhCC
Confidence 899999999999999999986
No 23
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.94 E-value=1 Score=55.42 Aligned_cols=101 Identities=29% Similarity=0.365 Sum_probs=85.3
Q ss_pred ccCCChhHHHHHHHHHHHHHhhCccccc--cchhhhhhhhhcCCCChhHHHHHHHHHHhhhhc--CCCcccHHHHHHHHH
Q 001345 251 YRDIDPNIRMSCIQSLGVWILSYPSFFL--QDLYLKYLGWTLNDKSASVRKSSVLALQNLYEV--DDNVPTLGLFTERFS 326 (1096)
Q Consensus 251 yRDv~p~IR~~Ci~eLG~Wi~~yP~~FL--~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~--~~~~~~L~lFt~RFk 326 (1096)
|+--.|.||+.-+..+.+.|..-++.|. =|+||--+.-.=+|.+++||..+-++|.-|.+. +...+.|+.-.+
T Consensus 183 ~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~Ive--- 259 (885)
T KOG2023|consen 183 FKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVE--- 259 (885)
T ss_pred HhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHH---
Confidence 4445999999999999999998888766 489999999999999999999999999999865 345566776665
Q ss_pred HHHhhhcccCchhHHHHHHHHHHHHHhcC
Q 001345 327 NRMIELADDIDVSVAVCAIGLVKQLLRHQ 355 (1096)
Q Consensus 327 ~RlveMa~D~D~~V~v~AI~Ll~~L~~~~ 355 (1096)
=|+..+.|.|.+|+.+|......+-+..
T Consensus 260 -yML~~tqd~dE~VALEACEFwla~aeqp 287 (885)
T KOG2023|consen 260 -YMLQRTQDVDENVALEACEFWLALAEQP 287 (885)
T ss_pred -HHHHHccCcchhHHHHHHHHHHHHhcCc
Confidence 4666778999999999999998888775
No 24
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=87.44 E-value=2.9 Score=46.86 Aligned_cols=96 Identities=23% Similarity=0.345 Sum_probs=74.6
Q ss_pred CChhHHHHHHHHHHHHHhhCccc---cccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHh
Q 001345 254 IDPNIRMSCIQSLGVWILSYPSF---FLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMI 330 (1096)
Q Consensus 254 v~p~IR~~Ci~eLG~Wi~~yP~~---FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~Rlv 330 (1096)
-||.|+..++-.||. ...||.. .-+-.=+.-+|-+|+|+++.||..++.+|..+-.+.++...++.+...-.+.++
T Consensus 25 ~dp~i~e~al~al~n-~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~ 103 (254)
T PF04826_consen 25 EDPFIQEKALIALGN-SAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETV 103 (254)
T ss_pred CChHHHHHHHHHHHh-hccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHh
Confidence 479999999999998 5666642 335577888999999999999999999999998777777777776554433333
Q ss_pred hhcccCchhHHHHHHHHHHHHH
Q 001345 331 ELADDIDVSVAVCAIGLVKQLL 352 (1096)
Q Consensus 331 eMa~D~D~~V~v~AI~Ll~~L~ 352 (1096)
+ ...|..|...++++|+.|.
T Consensus 104 s--~~lns~~Q~agLrlL~nLt 123 (254)
T PF04826_consen 104 S--SPLNSEVQLAGLRLLTNLT 123 (254)
T ss_pred c--CCCCCHHHHHHHHHHHccC
Confidence 3 4567888899999888874
No 25
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=86.60 E-value=16 Score=47.26 Aligned_cols=114 Identities=14% Similarity=0.183 Sum_probs=89.1
Q ss_pred HHHHHhhhceeEeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCc
Q 001345 236 EDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNV 315 (1096)
Q Consensus 236 e~~i~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~ 315 (1096)
.++...+| ..|.+|..|.-++.|-.=+..+-.|..+||-.+ +.++++-+|.++++..|.+|..-+.+.+..-+..
T Consensus 331 ~~~~~~v~-p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~~----~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~ 405 (815)
T KOG1820|consen 331 RKYAKNVF-PSLLDRLKEKKSELRDALLKALDAILNSTPLSK----MSEAILEALKGKNPQIKGECLLLLDRKLRKLGPK 405 (815)
T ss_pred HHHHHhhc-chHHHHhhhccHHHHHHHHHHHHHHHhcccHHH----HHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCc
Confidence 34444445 356689999999999988888888888777654 6799999999999999999999999999754321
Q ss_pred ccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhc
Q 001345 316 PTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRH 354 (1096)
Q Consensus 316 ~~L~lFt~RFk~RlveMa~D~D~~V~v~AI~Ll~~L~~~ 354 (1096)
.--+.=...-++=++.+..|.|.+||..|.+.+..+.++
T Consensus 406 ~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 406 TVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKV 444 (815)
T ss_pred CcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHH
Confidence 112223344566777888899999999999999998886
No 26
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=86.11 E-value=4.5 Score=46.16 Aligned_cols=140 Identities=16% Similarity=0.214 Sum_probs=92.6
Q ss_pred hceeEeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhc--CCCcccHH-
Q 001345 243 FTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEV--DDNVPTLG- 319 (1096)
Q Consensus 243 F~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~--~~~~~~L~- 319 (1096)
++++.+.=.+=.+|.||...++.||......+..- ..|+..|.-.+......||..|+++|-.+.-. .+......
T Consensus 28 l~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a--~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~ 105 (298)
T PF12719_consen 28 LDSLILPAVQSSDPAVRELALKCLGLCCLLDKELA--KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESD 105 (298)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhc
Confidence 33334444455788999999999998887777443 45788888888666999999999999888622 11111111
Q ss_pred ----HHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhcCCCCC-CCh-hhHHhhhcC----CChHHHHHHHHHH
Q 001345 320 ----LFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPD-DDL-GPLYDLLID----DPPEIRRAIGELV 384 (1096)
Q Consensus 320 ----lFt~RFk~RlveMa~D~D~~V~v~AI~Ll~~L~~~~~L~~-ed~-~~V~~Lvfd----~~~~Vr~AAg~fv 384 (1096)
.....+-+-+.....+.+.+|+..|++-+..|+=+|.+.+ .++ ..+.-+.|+ ++.++|+.-+-|+
T Consensus 106 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ff 180 (298)
T PF12719_consen 106 NDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFF 180 (298)
T ss_pred cCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHH
Confidence 2333344444555555588899999999999999998887 332 344344442 3456666666664
No 27
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=85.55 E-value=2.3 Score=51.63 Aligned_cols=91 Identities=24% Similarity=0.270 Sum_probs=72.9
Q ss_pred cCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhh
Q 001345 252 RDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIE 331 (1096)
Q Consensus 252 RDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~Rlve 331 (1096)
.+-+|.||..-+..|+.-. ..-+-+..+..+.-.|+|+++-||.+|+.++.++|+... ..+..+ |-+.+..
T Consensus 89 ~~~n~~~~~lAL~~l~~i~----~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p--~~~~~~---~~~~l~~ 159 (526)
T PF01602_consen 89 NSPNPYIRGLALRTLSNIR----TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDP--DLVEDE---LIPKLKQ 159 (526)
T ss_dssp CSSSHHHHHHHHHHHHHH-----SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCH--CCHHGG---HHHHHHH
T ss_pred cCCCHHHHHHHHhhhhhhc----ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCH--HHHHHH---HHHHHhh
Confidence 3788999999999999732 333346688999999999999999999999999997521 223332 4557778
Q ss_pred hcccCchhHHHHHHHHHHHH
Q 001345 332 LADDIDVSVAVCAIGLVKQL 351 (1096)
Q Consensus 332 Ma~D~D~~V~v~AI~Ll~~L 351 (1096)
+..|.|+.|...|+.++..+
T Consensus 160 lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 160 LLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp HTTHSSHHHHHHHHHHHHHH
T ss_pred hccCCcchhHHHHHHHHHHH
Confidence 88999999999999999999
No 28
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=85.12 E-value=81 Score=45.08 Aligned_cols=126 Identities=14% Similarity=0.116 Sum_probs=96.2
Q ss_pred cCCChhHHHHHHHHHHHHHhhC---ccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHH
Q 001345 252 RDIDPNIRMSCIQSLGVWILSY---PSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNR 328 (1096)
Q Consensus 252 RDv~p~IR~~Ci~eLG~Wi~~y---P~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~R 328 (1096)
+.-+++||..++..|+.--..- .....+..-+..|-+.|.+.+..++..++.+|..|....+. ..+ +.
T Consensus 498 ~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~-~~I--------~~ 568 (2102)
T PLN03200 498 ETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA-ATI--------SQ 568 (2102)
T ss_pred cCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccch-hHH--------HH
Confidence 3446899999888888654422 22344668899999999999999999999999999765433 122 56
Q ss_pred HhhhcccCchhHHHHHHHHHHHHHhc---------CCCCCCChhhHHhhhcCCChHHHHHHHHHHHH
Q 001345 329 MIELADDIDVSVAVCAIGLVKQLLRH---------QLLPDDDLGPLYDLLIDDPPEIRRAIGELVYD 386 (1096)
Q Consensus 329 lveMa~D~D~~V~v~AI~Ll~~L~~~---------~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~ 386 (1096)
+++|-...|..+...+++.+..|+.. +..++.-++.+.+|+-+.++.+++.|+..+..
T Consensus 569 Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsn 635 (2102)
T PLN03200 569 LTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLAD 635 (2102)
T ss_pred HHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 88888667778888899988777653 23345667899999999999999999976643
No 29
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.58 E-value=1.5 Score=54.14 Aligned_cols=140 Identities=21% Similarity=0.312 Sum_probs=106.6
Q ss_pred HHHhhhceeEeccccCCChhHHHHHHHHHHHHHhhCccccccc----hhhh----------------hhh-------h--
Q 001345 238 MMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQD----LYLK----------------YLG-------W-- 288 (1096)
Q Consensus 238 ~i~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d----~YLK----------------YlG-------W-- 288 (1096)
+.++.|..| .|=.||..=.||...-+.||.. ..-.+.|+.- .-+. -=| |
T Consensus 278 l~D~aF~~v-C~~v~D~sl~VRV~AaK~lG~~-~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~a 355 (823)
T KOG2259|consen 278 LKDAAFSSV-CRAVRDRSLSVRVEAAKALGEF-EQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNA 355 (823)
T ss_pred hHHHHHHHH-HHHHhcCceeeeehHHHHhchH-HHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccc
Confidence 334444332 3556888999999999999864 4555555532 1111 123 3
Q ss_pred -------------------------hcCCCChhHHHHHHHHHHhhhh-cCCCcccHHHHHHHHHHHHhhhcccCchhHHH
Q 001345 289 -------------------------TLNDKSASVRKSSVLALQNLYE-VDDNVPTLGLFTERFSNRMIELADDIDVSVAV 342 (1096)
Q Consensus 289 -------------------------~L~Dk~~~VR~~~L~aL~~Ly~-~~~~~~~L~lFt~RFk~RlveMa~D~D~~V~v 342 (1096)
.|-|.--+||.+++-++..|-- .|.+. .+=-+=||.|-+|-...||.
T Consensus 356 dvpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA-------~~aldfLvDMfNDE~~~VRL 428 (823)
T KOG2259|consen 356 DVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFA-------VRALDFLVDMFNDEIEVVRL 428 (823)
T ss_pred cCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcH-------HHHHHHHHHHhccHHHHHHH
Confidence 5778888999999999999964 34443 33444589999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCChhhHHhhhcCCChHHHHHHHHHHHH
Q 001345 343 CAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVYD 386 (1096)
Q Consensus 343 ~AI~Ll~~L~~~~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~ 386 (1096)
.||.-|+.|..++.|.++.++.+..-+=|.++.||.++-+++..
T Consensus 429 ~ai~aL~~Is~~l~i~eeql~~il~~L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 429 KAIFALTMISVHLAIREEQLRQILESLEDRSVDVREALRELLKN 472 (823)
T ss_pred HHHHHHHHHHHHheecHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999988764
No 30
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=84.42 E-value=28 Score=43.92 Aligned_cols=135 Identities=17% Similarity=0.182 Sum_probs=90.7
Q ss_pred hhhceeEeccccCCChhHHHHHHHHHHHHHhhCccccccc----hhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcc
Q 001345 241 KIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQD----LYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVP 316 (1096)
Q Consensus 241 ~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d----~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~ 316 (1096)
...+.+.+---|-..|+ | .++-+..++...|+.=..+ ..++|+--.+--|+..||..|++.|..|-.+. ..
T Consensus 44 r~vn~il~vkKresi~d-R--Il~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~--~e 118 (892)
T KOG2025|consen 44 RVVNYILLVKKRESIPD-R--ILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDEN--AE 118 (892)
T ss_pred HHHHHheeeccCCCcHH-H--HHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccc--cc
Confidence 33443444445555554 3 3466667777777655443 45577777788899999999999999998632 11
Q ss_pred cHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhcCCCCCCChhhH--Hhhh--cCCChHHHHHHHH
Q 001345 317 TLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPL--YDLL--IDDPPEIRRAIGE 382 (1096)
Q Consensus 317 ~L~lFt~RFk~RlveMa~D~D~~V~v~AI~Ll~~L~~~~~L~~ed~~~V--~~Lv--fd~~~~Vr~AAg~ 382 (1096)
.=+...+.....|.+-..|.++.||.+|+-.|+.+.... -+++|.-+ +.-+ .|.++.||+||--
T Consensus 119 idd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~--~dee~~v~n~l~~liqnDpS~EVRRaaLs 186 (892)
T KOG2025|consen 119 IDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDP--KDEECPVVNLLKDLIQNDPSDEVRRAALS 186 (892)
T ss_pred cCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCC--CCCcccHHHHHHHHHhcCCcHHHHHHHHH
Confidence 112344556777777778999999999999999887643 34455433 3222 2999999999863
No 31
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=83.44 E-value=30 Score=42.79 Aligned_cols=193 Identities=19% Similarity=0.222 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHhh-ccCCccchHhHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhHHHH------H
Q 001345 130 DNLVSFWDNLVVEC-QNGPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFISVAKMLGAQRETT------Q 202 (1096)
Q Consensus 130 ~n~~eF~~~Lv~~~-~~~~L~D~~lmd~l~~wL~~LS~S~vR~fRHTATl~aL~l~taLv~va~~l~~~~~~~------q 202 (1096)
..+..|+.+++.-- +..+ -...+.+.++-.+.--.+|+-...|.-+ ++|..-++++...+...+-|. .
T Consensus 65 dRil~fl~~f~~Y~~~~dp-eg~~~V~~~~~h~lRg~eskdk~VR~r~----lqila~~~d~v~eIDe~l~N~L~ekl~~ 139 (885)
T COG5218 65 DRILSFLKRFFEYDMPDDP-EGEELVAGTFYHLLRGTESKDKKVRKRS----LQILALLSDVVREIDEVLANGLLEKLSE 139 (885)
T ss_pred HHHHHHHHHHHHhcCCCCh-hhhHHHHHHHHHHHhcccCcchhHHHHH----HHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 44566777776522 1111 0024666666777777888888888655 666666677777766665542 3
Q ss_pred HHHHHHHcccCCCccHHHHH--HHHHHHHH-hHHHHHHH------------------HHhhh----ceeEeccccCCChh
Q 001345 203 RQLNAEKKKRVEGPRVESLN--KRLSMTHK-NITDLEDM------------------MRKIF----TGLFVHRYRDIDPN 257 (1096)
Q Consensus 203 rQleaEk~K~~~~~r~e~l~--~~~~e~~~-~~e~ie~~------------------i~~iF----~~VFvhRyRDv~p~ 257 (1096)
|-++.|+. -|++++. .+.++.+. ....+.++ +|-+. -+..+.|-|||+.-
T Consensus 140 R~~DRE~~-----VR~eAv~~L~~~Qe~~~neen~~~n~l~~~vqnDPS~EVRr~allni~vdnsT~p~IlERarDv~~a 214 (885)
T COG5218 140 RLFDREKA-----VRREAVKVLCYYQEMELNEENRIVNLLKDIVQNDPSDEVRRLALLNISVDNSTYPCILERARDVSGA 214 (885)
T ss_pred HHhcchHH-----HHHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCcHHHHHHHHHHHeeeCCCcchhHHHHhhhhhHH
Confidence 34444432 1333331 11112111 11111122 22222 25678999999999
Q ss_pred HHHHHHHHHHHHHhhCccccc-cchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhc--c
Q 001345 258 IRMSCIQSLGVWILSYPSFFL-QDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELA--D 334 (1096)
Q Consensus 258 IR~~Ci~eLG~Wi~~yP~~FL-~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlveMa--~ 334 (1096)
+|...-+.+---|- .-.|+ .+.....+-|.|.|..-.||.+|..+|..-|.++.-. |+|++. .
T Consensus 215 nRr~vY~r~Lp~iG--d~~~lsi~kri~l~ewgl~dRe~sv~~a~~d~ia~~w~~~~d~------------~lveLle~l 280 (885)
T COG5218 215 NRRMVYERCLPRIG--DLKSLSIDKRILLMEWGLLDREFSVKGALVDAIASAWRIPEDL------------RLVELLEFL 280 (885)
T ss_pred HHHHHHHHHhhhhc--chhhccccceehhhhhcchhhhhhHHHHHHHHHHHHhcccccc------------cHHHHHHHH
Confidence 99874443321111 11244 3556668999999999999999999999999776443 455544 3
Q ss_pred cCc-hhHHHHHHH
Q 001345 335 DID-VSVAVCAIG 346 (1096)
Q Consensus 335 D~D-~~V~v~AI~ 346 (1096)
|+. ..|.|.||+
T Consensus 281 DvSr~sv~v~aik 293 (885)
T COG5218 281 DVSRRSVLVAAIK 293 (885)
T ss_pred hhhhHHHHHHHHH
Confidence 443 347777776
No 32
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=82.62 E-value=2.4 Score=40.97 Aligned_cols=54 Identities=26% Similarity=0.441 Sum_probs=43.1
Q ss_pred CChhHHHHHHHHHHHHHhhCcccccc-------chhhhhhhhhcCC-----------------CChhHHHHHHHHHHh
Q 001345 254 IDPNIRMSCIQSLGVWILSYPSFFLQ-------DLYLKYLGWTLND-----------------KSASVRKSSVLALQN 307 (1096)
Q Consensus 254 v~p~IR~~Ci~eLG~Wi~~yP~~FL~-------d~YLKYlGW~L~D-----------------k~~~VR~~~L~aL~~ 307 (1096)
+.|+||...+.-|..++..||+..+. +.|+.++||.... ++...|...|.+|.+
T Consensus 23 i~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~~~~~~~s~s~~~~~~~~~~~~~~k~r~~~L~~L~~ 100 (102)
T PF12333_consen 23 ISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWSTQSSNRSSSVASSSSSSSKKKSKKWRLKVLQRLAK 100 (102)
T ss_pred CCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCCccCCCcceeeeccccccccccCHHHHHHHHHHHHH
Confidence 56999999999999999999999332 6899999999422 566667777766654
No 33
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=82.37 E-value=35 Score=46.28 Aligned_cols=122 Identities=22% Similarity=0.275 Sum_probs=80.1
Q ss_pred eEeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHH
Q 001345 246 LFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERF 325 (1096)
Q Consensus 246 VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RF 325 (1096)
.|..|+-|..+++|..|++...+-+.+.|+.=-+-.-+-++---+.|.+-.||..++-.... ..-|.--+
T Consensus 304 ~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~----------v~~~~l~~ 373 (1266)
T KOG1525|consen 304 AFLGRFNDISVEVRMECVESIKQCLLNNPSIAKASTILLALRERDLDEDVRVRTQVVIVACD----------VMKFKLVY 373 (1266)
T ss_pred HHHHHhccCChhhhhhHHHHhHHHHhcCchhhhHHHHHHHHHhhcCChhhhheeeEEEEEee----------hhHhhhhh
Confidence 58899999999999999999999999988877766655555555555554444433311111 11121112
Q ss_pred HH----HHhhhcccCchhHHHHHHHHHHHHHhc--C-------CCCCC-C--hhhHHhhhcCCChHHH
Q 001345 326 SN----RMIELADDIDVSVAVCAIGLVKQLLRH--Q-------LLPDD-D--LGPLYDLLIDDPPEIR 377 (1096)
Q Consensus 326 k~----RlveMa~D~D~~V~v~AI~Ll~~L~~~--~-------~L~~e-d--~~~V~~Lvfd~~~~Vr 377 (1096)
-+ =+.|-++|+=..||..||+=|+.++++ . .+++. + -+.++.++|...-..|
T Consensus 374 ~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r 441 (1266)
T KOG1525|consen 374 IPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDLDDR 441 (1266)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccchhHHhhHhhccccHH
Confidence 22 122334699999999999999999995 1 11111 1 2478888888877766
No 34
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=81.59 E-value=7 Score=37.49 Aligned_cols=70 Identities=29% Similarity=0.330 Sum_probs=51.1
Q ss_pred hhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHh
Q 001345 281 LYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLR 353 (1096)
Q Consensus 281 ~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlveMa~D~D~~V~v~AI~Ll~~L~~ 353 (1096)
.-++-+--.+.|++..||..+..+|..+-+.-. ..-+..|.+=| +-|...+.|.|.+|+..| .+|..+++
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~-~~~l~~f~~IF-~~L~kl~~D~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVAR-GEILPYFNEIF-DALCKLSADPDENVRSAA-ELLDRLLK 96 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHcCCchhHHHHH-HHHHHHhc
Confidence 345666778999999999999999999976421 12344555533 466777789999999888 66766654
No 35
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=80.78 E-value=19 Score=47.65 Aligned_cols=217 Identities=19% Similarity=0.136 Sum_probs=135.8
Q ss_pred CCccchHhHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcccCCCc-cHHHHHHH
Q 001345 146 GPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFISVAKMLGAQRETTQRQLNAEKKKRVEGP-RVESLNKR 224 (1096)
Q Consensus 146 ~~L~D~~lmd~l~~wL~~LS~S~vR~fRHTATl~aL~l~taLv~va~~l~~~~~~~qrQleaEk~K~~~~~-r~e~l~~~ 224 (1096)
..+|-+|+++.+..++.--+.+-+| +...+.|-..|.+...=++-+|++-.+---.-.+++ ..+.. -
T Consensus 501 aniF~eYlfP~L~~l~~d~~~~~vR----------iayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~--~ 568 (1431)
T KOG1240|consen 501 ANIFPEYLFPHLNHLLNDSSAQIVR----------IAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQN--Y 568 (1431)
T ss_pred chhhHhhhhhhhHhhhccCccceeh----------hhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccc--c
Confidence 3467888888888887754444444 333445555555555444445554443100000010 00000 0
Q ss_pred HHHHHHhHHHHHHHHHhhhceeEeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHH
Q 001345 225 LSMTHKNITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLA 304 (1096)
Q Consensus 225 ~~e~~~~~e~ie~~i~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~a 304 (1096)
=.+.+.-...++++...+ .-|-.|-+|..=++.|+.--.-+-..=-||--|..|---|||++..-|-+-...
T Consensus 569 ~~~~~~L~~~V~~~v~sL--------lsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfds 640 (1431)
T KOG1240|consen 569 NTELQALHHTVEQMVSSL--------LSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDS 640 (1431)
T ss_pred chHHHHHHHHHHHHHHHH--------HcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhh
Confidence 112333334445543333 347778899888888775443333334478999999999999999999888877
Q ss_pred HHhhhhcCCCcccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhcCCCCCCC----hhhHHhhhcCCChHHHHHH
Q 001345 305 LQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDD----LGPLYDLLIDDPPEIRRAI 380 (1096)
Q Consensus 305 L~~Ly~~~~~~~~L~lFt~RFk~RlveMa~D~D~~V~v~AI~Ll~~L~~~~~L~~ed----~~~V~~Lvfd~~~~Vr~AA 380 (1096)
+..+-- ++ +-+.--+-..+=|..-..|.+..|-+.|++-+..|.+.|+|.-.- ++.|+.|+-+.+.=||+++
T Consensus 641 I~gvsi---~V-G~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~ 716 (1431)
T KOG1240|consen 641 IVGVSI---FV-GWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAV 716 (1431)
T ss_pred ccceEE---EE-eeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHH
Confidence 775521 00 111123334544445558999999999999999999999998553 3466777889999999999
Q ss_pred HHHHHH
Q 001345 381 GELVYD 386 (1096)
Q Consensus 381 g~fv~~ 386 (1096)
-.|++.
T Consensus 717 ~~iI~~ 722 (1431)
T KOG1240|consen 717 LGIIAA 722 (1431)
T ss_pred HHHHHH
Confidence 999875
No 36
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=80.49 E-value=8.4 Score=47.38 Aligned_cols=99 Identities=19% Similarity=0.270 Sum_probs=77.2
Q ss_pred CChhHHHHHHHHHHHHHhhC---ccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHh
Q 001345 254 IDPNIRMSCIQSLGVWILSY---PSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMI 330 (1096)
Q Consensus 254 v~p~IR~~Ci~eLG~Wi~~y---P~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~Rlv 330 (1096)
-+|.||..|+.+||.-...- -....+..-+..+.-.|.|++..|-..|+++|..|-+.+.... ..|-.-+..-|.
T Consensus 89 ~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~--~l~~~~~~~~L~ 166 (503)
T PF10508_consen 89 PSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLE--QLFDSNLLSKLK 166 (503)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHH--HHhCcchHHHHH
Confidence 67999999999999866443 2346788999999999999999999999999999997654322 244555566666
Q ss_pred hhcccCchhHHHHHHHHHHHHHhc
Q 001345 331 ELADDIDVSVAVCAIGLVKQLLRH 354 (1096)
Q Consensus 331 eMa~D~D~~V~v~AI~Ll~~L~~~ 354 (1096)
.+..-.+..||..+..++..|.++
T Consensus 167 ~l~~~~~~~vR~Rv~el~v~i~~~ 190 (503)
T PF10508_consen 167 SLMSQSSDIVRCRVYELLVEIASH 190 (503)
T ss_pred HHHhccCHHHHHHHHHHHHHHHhc
Confidence 666444668898888888888776
No 37
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=79.27 E-value=13 Score=40.14 Aligned_cols=132 Identities=17% Similarity=0.157 Sum_probs=81.3
Q ss_pred CCChhHHHHHHHHHHHHHhhC-ccccccc--hhhh----hhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHH
Q 001345 253 DIDPNIRMSCIQSLGVWILSY-PSFFLQD--LYLK----YLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERF 325 (1096)
Q Consensus 253 Dv~p~IR~~Ci~eLG~Wi~~y-P~~FL~d--~YLK----YlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RF 325 (1096)
+.+=+.|...+..|-..+..+ |..+... .+|+ -+.-.++|....|-..++..|..|+.. ....+..|.+.+
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~--l~~~~~~~~~~~ 95 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQ--LGSHFEPYADIL 95 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHH--HGGGGHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH--HhHhHHHHHHHH
Confidence 344455566666666665555 2222211 1233 444567888888888888888888854 234588899999
Q ss_pred HHHHhhhcccCchhHHHHHHHHHHHHHhcCCCCCCC--hhhHHhhhcCCChHHHHHHHHHHHHH
Q 001345 326 SNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDD--LGPLYDLLIDDPPEIRRAIGELVYDH 387 (1096)
Q Consensus 326 k~RlveMa~D~D~~V~v~AI~Ll~~L~~~~~L~~ed--~~~V~~Lvfd~~~~Vr~AAg~fv~~~ 387 (1096)
-+-|+..+.|.-..|+..|.+.+..|.++--. ... ...+....-+.+|.+|..++.++..-
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~-~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~ 158 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCSY-SPKILLEILSQGLKSKNPQVREECAEWLAII 158 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H---HHHHHHHHHHTT-S-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCCc-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 99999999998889999999999999997321 222 34555566689999999999998753
No 38
>PTZ00429 beta-adaptin; Provisional
Probab=79.18 E-value=2.1e+02 Score=37.24 Aligned_cols=158 Identities=17% Similarity=0.157 Sum_probs=104.8
Q ss_pred cHHHHHHHHHH--HHHhHHHHHHHHHhhhceeEeccc--------cCCChhHHHHHHHHHHHHHhhCcc-ccc-cchhhh
Q 001345 217 RVESLNKRLSM--THKNITDLEDMMRKIFTGLFVHRY--------RDIDPNIRMSCIQSLGVWILSYPS-FFL-QDLYLK 284 (1096)
Q Consensus 217 r~e~l~~~~~e--~~~~~e~ie~~i~~iF~~VFvhRy--------RDv~p~IR~~Ci~eLG~Wi~~yP~-~FL-~d~YLK 284 (1096)
.+..|.+.+.. ..++++.++.++..+-.|.=+..+ .=-+.++|.+|--.|...-...|+ .+| -+++.|
T Consensus 33 e~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~K 112 (746)
T PTZ00429 33 EGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQ 112 (746)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHH
Confidence 45566665543 345677777777777665211111 011568888888888877777887 444 334444
Q ss_pred hhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhc--CCCCC-CC
Q 001345 285 YLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRH--QLLPD-DD 361 (1096)
Q Consensus 285 YlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlveMa~D~D~~V~v~AI~Ll~~L~~~--~~L~~-ed 361 (1096)
-|.|+++.+|--+|+.|..+=. + .+ ++-.-.-+.....|.++-||-.|+--+..|++. .+..+ .-
T Consensus 113 ----Dl~d~Np~IRaLALRtLs~Ir~-~----~i---~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~ 180 (746)
T PTZ00429 113 ----DTTNSSPVVRALAVRTMMCIRV-S----SV---LEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDF 180 (746)
T ss_pred ----HcCCCCHHHHHHHHHHHHcCCc-H----HH---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccch
Confidence 4789999999999999988732 2 22 222222233334799999999998888888875 33332 34
Q ss_pred hhhHHhhhcCCChHHHHHHHHHHHH
Q 001345 362 LGPLYDLLIDDPPEIRRAIGELVYD 386 (1096)
Q Consensus 362 ~~~V~~Lvfd~~~~Vr~AAg~fv~~ 386 (1096)
++.+..++-|.++.|...|...+++
T Consensus 181 ~~~L~~LL~D~dp~Vv~nAl~aL~e 205 (746)
T PTZ00429 181 KKDLVELLNDNNPVVASNAAAIVCE 205 (746)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHH
Confidence 5788999999999998888777665
No 39
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=78.72 E-value=5.7 Score=50.66 Aligned_cols=99 Identities=24% Similarity=0.264 Sum_probs=70.8
Q ss_pred EeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhc-CCCcccHHHHHHHH
Q 001345 247 FVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEV-DDNVPTLGLFTERF 325 (1096)
Q Consensus 247 FvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~-~~~~~~L~lFt~RF 325 (1096)
|.+-..|-.|.||..-|..|| ..+..=+-+.++.-+--.|.|+++.||..|.-++.++|+- ++....++ +
T Consensus 97 i~kDl~d~N~~iR~~AlR~ls----~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g-----~ 167 (757)
T COG5096 97 IQKDLQDPNEEIRGFALRTLS----LLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELG-----L 167 (757)
T ss_pred HHhhccCCCHHHHHHHHHHHH----hcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhccc-----H
Confidence 344556788889988888887 4455555667778888888999999999999999999853 23322221 3
Q ss_pred HHHHhhhcccCchhHHHHHHHHHHHHHhc
Q 001345 326 SNRMIELADDIDVSVAVCAIGLVKQLLRH 354 (1096)
Q Consensus 326 k~RlveMa~D~D~~V~v~AI~Ll~~L~~~ 354 (1096)
-.-+.+++.|.|+.|-..|..-+..+...
T Consensus 168 ~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 168 IDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 33556777888888888888877776554
No 40
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=78.71 E-value=21 Score=44.96 Aligned_cols=208 Identities=20% Similarity=0.166 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHHHhhccCCccchHhHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHH----HHHHHHHHhHHHHHH
Q 001345 128 FKDNLVSFWDNLVVECQNGPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFI----SVAKMLGAQRETTQR 203 (1096)
Q Consensus 128 Fr~n~~eF~~~Lv~~~~~~~L~D~~lmd~l~~wL~~LS~S~vR~fRHTATl~aL~l~taLv----~va~~l~~~~~~~qr 203 (1096)
--..+.+|...+|...+....-++ |.+.++.+|.--..|+--..|.-...+--.++..-. +|...|...+ ..|
T Consensus 58 i~dRIl~fla~fv~sl~q~d~e~D-lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l--~~R 134 (892)
T KOG2025|consen 58 IPDRILSFLARFVESLPQLDKEED-LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKL--LIR 134 (892)
T ss_pred cHHHHHHHHHHHHHhhhccCchhh-HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHH--HHH
Confidence 445678899999987775444333 888888999988899988888766444333332111 1222222211 223
Q ss_pred HHHHHHcccCCCccHHHHHHHHHHHH-----HhHHHHHHHHH-----------------hh-----hceeEeccccCCCh
Q 001345 204 QLNAEKKKRVEGPRVESLNKRLSMTH-----KNITDLEDMMR-----------------KI-----FTGLFVHRYRDIDP 256 (1096)
Q Consensus 204 QleaEk~K~~~~~r~e~l~~~~~e~~-----~~~e~ie~~i~-----------------~i-----F~~VFvhRyRDv~p 256 (1096)
-++.|+. -|++++. -+..+| ++.. +.+.+. .| .-+..|.|-|||+.
T Consensus 135 l~Drep~-----VRiqAv~-aLsrlQ~d~~dee~~-v~n~l~~liqnDpS~EVRRaaLsnI~vdnsTlp~IveRarDV~~ 207 (892)
T KOG2025|consen 135 LKDREPN-----VRIQAVL-ALSRLQGDPKDEECP-VVNLLKDLIQNDPSDEVRRAALSNISVDNSTLPCIVERARDVSG 207 (892)
T ss_pred HhccCch-----HHHHHHH-HHHHHhcCCCCCccc-HHHHHHHHHhcCCcHHHHHHHHHhhccCcccchhHHHHhhhhhH
Confidence 3332222 2444431 111122 1111 111111 11 12678999999999
Q ss_pred hHHHHHHHHHHHHHhhCccccc-cchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhc--
Q 001345 257 NIRMSCIQSLGVWILSYPSFFL-QDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELA-- 333 (1096)
Q Consensus 257 ~IR~~Ci~eLG~Wi~~yP~~FL-~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlveMa-- 333 (1096)
-+|...-+.+--=| .-.|+ .+.....+-|.|+|..-.||.+|.++|..=+= .|.+ .+|+|+.
T Consensus 208 anRrlvY~r~lpki---d~r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~Wl---------~~~d---gni~ElL~~ 272 (892)
T KOG2025|consen 208 ANRRLVYERCLPKI---DLRSLSIDKRVLLLEWGLNDREFSVKGALVDAILSGWL---------RFSD---GNILELLER 272 (892)
T ss_pred HHHHHHHHHhhhhh---hhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHh---------hhcc---ccHHHHHHH
Confidence 99999877776544 23344 35788899999999999999999998865331 1111 2566666
Q ss_pred ccCch--hHHHHHHHHHHHHHhcCCCCCC
Q 001345 334 DDIDV--SVAVCAIGLVKQLLRHQLLPDD 360 (1096)
Q Consensus 334 ~D~D~--~V~v~AI~Ll~~L~~~~~L~~e 360 (1096)
.|+.. +|+|.||+-+-.+.+-.++...
T Consensus 273 ldvsnss~vavk~lealf~~v~e~v~~~k 301 (892)
T KOG2025|consen 273 LDVSNSSEVAVKALEALFSGVREDVGSCK 301 (892)
T ss_pred hccccchHHHHHHHHHHHHHHHHHhhhhh
Confidence 46654 5999999877776555444433
No 41
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=78.51 E-value=9.5 Score=45.74 Aligned_cols=106 Identities=21% Similarity=0.139 Sum_probs=70.4
Q ss_pred CCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhh
Q 001345 253 DIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIEL 332 (1096)
Q Consensus 253 Dv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlveM 332 (1096)
|.++.+|..+.++|| |+. .+.-...|-=+|.|.++.||..++.+|.. -. .+- -+.++..
T Consensus 97 d~~~~vr~aaa~ALg-~i~-------~~~a~~~L~~~L~~~~p~vR~aal~al~~-r~-~~~-----------~~~L~~~ 155 (410)
T TIGR02270 97 AGPEGLCAGIQAALG-WLG-------GRQAEPWLEPLLAASEPPGRAIGLAALGA-HR-HDP-----------GPALEAA 155 (410)
T ss_pred CCCHHHHHHHHHHHh-cCC-------chHHHHHHHHHhcCCChHHHHHHHHHHHh-hc-cCh-----------HHHHHHH
Confidence 778888999999998 221 11122334445688888888888855544 11 111 1245555
Q ss_pred cccCchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcCCChHHHHHHHHHH
Q 001345 333 ADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELV 384 (1096)
Q Consensus 333 a~D~D~~V~v~AI~Ll~~L~~~~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv 384 (1096)
..|.|+.|+..|++.+..|-....++ .+...+-|.++.||.+|..=+
T Consensus 156 L~d~d~~Vra~A~raLG~l~~~~a~~-----~L~~al~d~~~~VR~aA~~al 202 (410)
T TIGR02270 156 LTHEDALVRAAALRALGELPRRLSES-----TLRLYLRDSDPEVRFAALEAG 202 (410)
T ss_pred hcCCCHHHHHHHHHHHHhhccccchH-----HHHHHHcCCCHHHHHHHHHHH
Confidence 56999999999999888877654433 455667789999998887654
No 42
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=77.26 E-value=7.4 Score=32.56 Aligned_cols=55 Identities=27% Similarity=0.222 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHH
Q 001345 295 ASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQL 351 (1096)
Q Consensus 295 ~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlveMa~D~D~~V~v~AI~Ll~~L 351 (1096)
+.||..++.+|-.+-... ...+..+....-+.|+.+..|.+..||..|+.-|..|
T Consensus 1 p~vR~~A~~aLg~l~~~~--~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGC--PELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTT--HHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhccc--HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 479999999998864322 3457778888888999999888889999999877654
No 43
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.03 E-value=7.9 Score=48.12 Aligned_cols=144 Identities=22% Similarity=0.180 Sum_probs=99.9
Q ss_pred HHHHHhhhceeEeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCc
Q 001345 236 EDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNV 315 (1096)
Q Consensus 236 e~~i~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~ 315 (1096)
+++|-.--=|+|||=.-|-.-++|..-+..++.--.+-|.. -..-|-||-=|+||....||+.|+.+|..+-.+=...
T Consensus 367 ~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~F--A~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~ 444 (823)
T KOG2259|consen 367 ESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGF--AVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIR 444 (823)
T ss_pred cccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHheec
Confidence 34444444599999999999999999999999988888874 4557889999999999999999999999997641111
Q ss_pred -ccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhc----------CCC-----CCCChhhHHhhhcC---CChHH
Q 001345 316 -PTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRH----------QLL-----PDDDLGPLYDLLID---DPPEI 376 (1096)
Q Consensus 316 -~~L~lFt~RFk~RlveMa~D~D~~V~v~AI~Ll~~L~~~----------~~L-----~~ed~~~V~~Lvfd---~~~~V 376 (1096)
..|..|.+ -..|...+||+..-.+|....=. ++| =|.|.+.||.-+++ .|+..
T Consensus 445 eeql~~il~--------~L~D~s~dvRe~l~elL~~~~~~d~~~i~m~v~~lL~~L~kyPqDrd~i~~cm~~iGqnH~~l 516 (823)
T KOG2259|consen 445 EEQLRQILE--------SLEDRSVDVREALRELLKNARVSDLECIDMCVAHLLKNLGKYPQDRDEILRCMGRIGQNHRRL 516 (823)
T ss_pred HHHHHHHHH--------HHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhCCCCcHHHHHHHHHHhccChhh
Confidence 23444433 22466677777665554432111 122 26788888888873 56665
Q ss_pred HHHH-HHHHHHHHH
Q 001345 377 RRAI-GELVYDHLI 389 (1096)
Q Consensus 377 r~AA-g~fv~~~l~ 389 (1096)
-.+. +.|++.+.+
T Consensus 517 v~s~m~rfl~kh~~ 530 (823)
T KOG2259|consen 517 VLSNMGRFLEKHTS 530 (823)
T ss_pred HHHHHHHHHHhccc
Confidence 5544 456665544
No 44
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=73.04 E-value=20 Score=47.48 Aligned_cols=177 Identities=22% Similarity=0.341 Sum_probs=105.2
Q ss_pred chhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcc--cHHHHHHHHHHHHhhhcccC-chhH-----------HHHHH
Q 001345 280 DLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVP--TLGLFTERFSNRMIELADDI-DVSV-----------AVCAI 345 (1096)
Q Consensus 280 d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~--~L~lFt~RFk~RlveMa~D~-D~~V-----------~v~AI 345 (1096)
|.-|-|+--.+.|+.+.||..+|..|..+...-..++ .-..|-+..-++|-.|+.|. ...| |..|.
T Consensus 461 DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~ 540 (1431)
T KOG1240|consen 461 DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY 540 (1431)
T ss_pred hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHH
Confidence 4678899999999999999999999999986422222 24569999999999999884 3333 33344
Q ss_pred HHHHH---HHhcCCCCCCChh--------------------hHHhhhcCCChHHHHHHHHHHHH--HHHHhhhcCcccCC
Q 001345 346 GLVKQ---LLRHQLLPDDDLG--------------------PLYDLLIDDPPEIRRAIGELVYD--HLIAQKFNSSQSGL 400 (1096)
Q Consensus 346 ~Ll~~---L~~~~~L~~ed~~--------------------~V~~Lvfd~~~~Vr~AAg~fv~~--~l~~~~~~~~~~~~ 400 (1096)
+.+.. +..+|++.+.+-+ .|..|+-|+.+-|+++.-+=+.. .+|. .
T Consensus 541 rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFG---------k 611 (1431)
T KOG1240|consen 541 RFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFG---------K 611 (1431)
T ss_pred HHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhh---------h
Confidence 43332 3335777654431 33455666777777766553221 1221 1
Q ss_pred CCCCCCchhhhHhHHHHHHHhccCCCchhhhHHhhhccccC---CCCChHHHHHHHcCCCCCCCCCchhhHHHHHHHHH
Q 001345 401 KGKDNDSSEVHLGRMLQILREFSADPILSIYVIDDVWEYMK---AMKDWKCIISMLLDENPLIDLNDDDATNLIRLLSA 476 (1096)
Q Consensus 401 ~~~~~~~~~~~l~~l~~~l~~f~~~~~~~~ylVDsLwd~~~---~lkDWe~m~~~LL~d~~~~~L~~~~e~~LieiL~a 476 (1096)
++. +..-|.-|+.||-+ .+. -|=-|+||... ..--|...-+|||-= -++.|+|.+|.+++..|-|
T Consensus 612 ~ks----ND~iLshLiTfLND--kDw----~LR~aFfdsI~gvsi~VG~rs~seyllPL-l~Q~ltD~EE~Viv~aL~~ 679 (1431)
T KOG1240|consen 612 EKS----NDVILSHLITFLND--KDW----RLRGAFFDSIVGVSIFVGWRSVSEYLLPL-LQQGLTDGEEAVIVSALGS 679 (1431)
T ss_pred ccc----ccchHHHHHHHhcC--ccH----HHHHHHHhhccceEEEEeeeeHHHHHHHH-HHHhccCcchhhHHHHHHH
Confidence 111 11112223333322 111 12235666654 557787776766521 1237899999999887754
No 45
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.97 E-value=9.1 Score=47.99 Aligned_cols=94 Identities=22% Similarity=0.353 Sum_probs=65.9
Q ss_pred HHHHHHHhhhceeEeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCC
Q 001345 234 DLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDD 313 (1096)
Q Consensus 234 ~ie~~i~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~ 313 (1096)
.+-+-+|.+..+-...=--|-...| .+|++-|+..|.. +|+.|||||- .++.++.+..
T Consensus 273 LlYECvNTVVa~s~s~g~~d~~asi-qLCvqKLr~fied------sDqNLKYlgL--------------lam~KI~ktH- 330 (877)
T KOG1059|consen 273 LLYECVNTVVAVSMSSGMSDHSASI-QLCVQKLRIFIED------SDQNLKYLGL--------------LAMSKILKTH- 330 (877)
T ss_pred HHHHHHHHheeehhccCCCCcHHHH-HHHHHHHhhhhhc------CCccHHHHHH--------------HHHHHHhhhC-
Confidence 3445555555553333334666666 6899999966543 5789999994 4555554321
Q ss_pred CcccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhc
Q 001345 314 NVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRH 354 (1096)
Q Consensus 314 ~~~~L~lFt~RFk~RlveMa~D~D~~V~v~AI~Ll~~L~~~ 354 (1096)
--|..++|+-|+....|+|.++|..|+.||..|...
T Consensus 331 -----p~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVsk 366 (877)
T KOG1059|consen 331 -----PKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSK 366 (877)
T ss_pred -----HHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhh
Confidence 147888998888877999999999999999888765
No 46
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=71.86 E-value=4.3 Score=34.00 Aligned_cols=53 Identities=30% Similarity=0.337 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHHHHHhhCcccc--ccchhhhhhhhhcCCCChhHHHHHHHHHHhh
Q 001345 256 PNIRMSCIQSLGVWILSYPSFF--LQDLYLKYLGWTLNDKSASVRKSSVLALQNL 308 (1096)
Q Consensus 256 p~IR~~Ci~eLG~Wi~~yP~~F--L~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~L 308 (1096)
|.+|..++..||.=....|... ..+.-+..|.=+|.|.+..||..+..+|..|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 6899999999998333344332 2356778888999999999999999998764
No 47
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=71.56 E-value=4.6 Score=30.23 Aligned_cols=27 Identities=33% Similarity=0.315 Sum_probs=21.5
Q ss_pred hhhhhhcCCCChhHHHHHHHHHHhhhh
Q 001345 284 KYLGWTLNDKSASVRKSSVLALQNLYE 310 (1096)
Q Consensus 284 KYlGW~L~Dk~~~VR~~~L~aL~~Ly~ 310 (1096)
-++--+|+|++++||..++.+|..+.+
T Consensus 3 p~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 3 PILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 345567899999999999999998875
No 48
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.30 E-value=14 Score=46.39 Aligned_cols=99 Identities=20% Similarity=0.137 Sum_probs=76.4
Q ss_pred cCCChhHHHHHHHHHHHHHh----hCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHH
Q 001345 252 RDIDPNIRMSCIQSLGVWIL----SYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSN 327 (1096)
Q Consensus 252 RDv~p~IR~~Ci~eLG~Wi~----~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~ 327 (1096)
+|=.|.||+.-+..+..-+- .-|..-+.+--=|.++-+=+|++.+||..+++.|..+..||-.-+-++.-.-
T Consensus 230 ~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lp---- 305 (1005)
T KOG1949|consen 230 EDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLP---- 305 (1005)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHH----
Confidence 78899999999988874333 3366666666556778888999999999999999999988754444444333
Q ss_pred HHhhhcccCchhHHHHHHHHHHHHHhc
Q 001345 328 RMIELADDIDVSVAVCAIGLVKQLLRH 354 (1096)
Q Consensus 328 RlveMa~D~D~~V~v~AI~Ll~~L~~~ 354 (1096)
++=-.-.|+-..||+.++.++..|..+
T Consensus 306 al~~~l~D~se~VRvA~vd~ll~ik~v 332 (1005)
T KOG1949|consen 306 ALRYSLHDNSEKVRVAFVDMLLKIKAV 332 (1005)
T ss_pred hcchhhhccchhHHHHHHHHHHHHHhh
Confidence 443444799999999999999999887
No 49
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=69.96 E-value=8.4 Score=50.65 Aligned_cols=126 Identities=20% Similarity=0.240 Sum_probs=94.7
Q ss_pred cccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcC-CCChhHHHHHHHHHHhhh-hcCCCcccHHHHHHHHHH
Q 001345 250 RYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLN-DKSASVRKSSVLALQNLY-EVDDNVPTLGLFTERFSN 327 (1096)
Q Consensus 250 RyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~-Dk~~~VR~~~L~aL~~Ly-~~~~~~~~L~lFt~RFk~ 327 (1096)
+|-| |+|++.-.-+||..|..- ..|++. .|..|.-+|. -+++-+|-.++-+|..|- .=| .-++.||+
T Consensus 933 ~~sd--p~Lq~AAtLaL~klM~iS-a~fces-~l~llftimeksp~p~IRsN~VvalgDlav~fp---nlie~~T~---- 1001 (1251)
T KOG0414|consen 933 LFSD--PELQAAATLALGKLMCIS-AEFCES-HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP---NLIEPWTE---- 1001 (1251)
T ss_pred cCCC--HHHHHHHHHHHHHHhhhh-HHHHHH-HHHHHHHHHhcCCCceeeecchheccchhhhcc---cccchhhH----
Confidence 4555 999999999999998664 445554 4566666666 899999999998887773 212 22344554
Q ss_pred HHhhhcccCchhHHHHHHHHHHHHHhcCCCCCC-ChhhHHhhhcCCChHHHHHHHHHHHH
Q 001345 328 RMIELADDIDVSVAVCAIGLVKQLLRHQLLPDD-DLGPLYDLLIDDPPEIRRAIGELVYD 386 (1096)
Q Consensus 328 RlveMa~D~D~~V~v~AI~Ll~~L~~~~~L~~e-d~~~V~~Lvfd~~~~Vr~AAg~fv~~ 386 (1096)
-|-.+..|.++.||..|+-+|+.|.-+|++--+ .+.....++-|.++.||.-|-.|..+
T Consensus 1002 ~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~E 1061 (1251)
T KOG0414|consen 1002 HLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSEMALCLEDPNAEISDLAKSFFKE 1061 (1251)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 556677999999999999999998888766533 34466678889999999998888664
No 50
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.29 E-value=24 Score=42.83 Aligned_cols=134 Identities=19% Similarity=0.104 Sum_probs=96.6
Q ss_pred eccccCCChhHHHHHHHHHHHHHhhCcccccc--chhhhhhhhhcC-CCChhHHHHHHHHHHhhhhcCCCcccHHHHHHH
Q 001345 248 VHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQ--DLYLKYLGWTLN-DKSASVRKSSVLALQNLYEVDDNVPTLGLFTER 324 (1096)
Q Consensus 248 vhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~--d~YLKYlGW~L~-Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~R 324 (1096)
-.|-+|-+..+|..|+..||.=-..-|+.-.. ..-|-=+-..|+ |-+.+|-+++++.|..+-+...+ -.++.|.--
T Consensus 264 a~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~-~~l~~~~l~ 342 (533)
T KOG2032|consen 264 ANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASN-DDLESYLLN 342 (533)
T ss_pred HHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhh-cchhhhchh
Confidence 35899999999999999999765555664332 222222333444 46789999999999999876544 345555444
Q ss_pred HHHHHhhhcccCchhHHHHHHHHHHHHHhc--CCCCCCChhhH-------HhhhcCCChHHHHHHHH
Q 001345 325 FSNRMIELADDIDVSVAVCAIGLVKQLLRH--QLLPDDDLGPL-------YDLLIDDPPEIRRAIGE 382 (1096)
Q Consensus 325 Fk~RlveMa~D~D~~V~v~AI~Ll~~L~~~--~~L~~ed~~~V-------~~Lvfd~~~~Vr~AAg~ 382 (1096)
.--|+..|-.|-++++|+.||.|...|.+- |=-++.+.+.| .-.+.|.+|.|++|.+.
T Consensus 343 ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~ 409 (533)
T KOG2032|consen 343 IALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRS 409 (533)
T ss_pred HHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHH
Confidence 777888999999999999999999999884 32233333333 34567999999999875
No 51
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=69.18 E-value=9.5 Score=42.34 Aligned_cols=65 Identities=20% Similarity=0.355 Sum_probs=47.1
Q ss_pred hcCCCChhHHHHHHHHHHhhhhc--------CCCcccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhc
Q 001345 289 TLNDKSASVRKSSVLALQNLYEV--------DDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRH 354 (1096)
Q Consensus 289 ~L~Dk~~~VR~~~L~aL~~Ly~~--------~~~~~~L~lFt~RFk~RlveMa~D~D~~V~v~AI~Ll~~L~~~ 354 (1096)
+|+|.++.|-..++.+...+|.. +........++. ||.+|+.|-.+..++|+..||+.+..+.-.
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~-lK~~Il~~~~~~~~gvk~~~iKFle~vIl~ 73 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNE-LKDRILSLWDSENPGVKLAAIKFLERVILV 73 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHH-HHHHHHHGGGSSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence 48999999999999999999942 111122344555 999999997666777888888877666554
No 52
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=68.21 E-value=9 Score=36.74 Aligned_cols=74 Identities=16% Similarity=0.182 Sum_probs=56.1
Q ss_pred HHHHHHhhhceeEeccccCCChhHHHHHHHHHHHHHhhCcccccc--chhhhhhhhhcCCCChhHHHHHHHHHHhhhh
Q 001345 235 LEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQ--DLYLKYLGWTLNDKSASVRKSSVLALQNLYE 310 (1096)
Q Consensus 235 ie~~i~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~--d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~ 310 (1096)
+.++++.|.+.|+ .=+-|-++.+|-.+.++|+.-.+..+..++. +.-..++.-.+.|.++.||..| ..|-+|.+
T Consensus 21 ~~~~l~~Il~pVL-~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 21 ISKYLDEILPPVL-KCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRLLK 96 (97)
T ss_pred HHHHHHHHHHHHH-HHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHHhc
Confidence 4455555555554 5578999999999999999999888887765 2334667788899999999988 66666654
No 53
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.16 E-value=16 Score=45.84 Aligned_cols=116 Identities=27% Similarity=0.298 Sum_probs=87.1
Q ss_pred HhHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcccCCCccHHHHHHHHHHHHHh
Q 001345 152 VLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFISVAKMLGAQRETTQRQLNAEKKKRVEGPRVESLNKRLSMTHKN 231 (1096)
Q Consensus 152 ~lmd~l~~wL~~LS~S~vR~fRHTATl~aL~l~taLv~va~~l~~~~~~~qrQleaEk~K~~~~~r~e~l~~~~~e~~~~ 231 (1096)
.+|++=...+..|=.+++-..|-|||.-.+++.+-+=.++ .
T Consensus 216 ~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~i---P------------------------------------ 256 (1005)
T KOG1949|consen 216 SIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMI---P------------------------------------ 256 (1005)
T ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc---C------------------------------------
Confidence 3566667789999999999999999998888876664431 1
Q ss_pred HHHHHHHHHhhhceeEeccccCCChhHHHHHHHHHHHHHhhCccc-cccchhhhhhhhhcCCCChhHHHHHHHHHHhhhh
Q 001345 232 ITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSF-FLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYE 310 (1096)
Q Consensus 232 ~e~ie~~i~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~-FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~ 310 (1096)
...+.++|..||+.+= .|...++|...++.|-. |.-.|.. =+=-.-|+-+|.+|+|++..||.+.+..|.++-.
T Consensus 257 ~~i~~~ll~kI~d~~a----~dt~s~VR~svf~gl~~-~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 257 PTILIDLLKKITDELA----FDTSSDVRCSVFKGLPM-ILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred HHHHHHHHHHHHHHhh----hccchheehhHhcCcHH-HHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 1246778888888763 58888999998888763 3344432 2223456788999999999999999999998864
Q ss_pred c
Q 001345 311 V 311 (1096)
Q Consensus 311 ~ 311 (1096)
.
T Consensus 332 v 332 (1005)
T KOG1949|consen 332 V 332 (1005)
T ss_pred h
Confidence 3
No 54
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=66.77 E-value=8.8 Score=28.70 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=22.9
Q ss_pred HHHhhhcccCchhHHHHHHHHHHHHHhc
Q 001345 327 NRMIELADDIDVSVAVCAIGLVKQLLRH 354 (1096)
Q Consensus 327 ~RlveMa~D~D~~V~v~AI~Ll~~L~~~ 354 (1096)
+.++++..|.+++||..|+.-+..|.++
T Consensus 3 p~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 3 PILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 5678888999999999999988888764
No 55
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.18 E-value=4e+02 Score=34.32 Aligned_cols=90 Identities=22% Similarity=0.428 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhcccC
Q 001345 257 NIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDI 336 (1096)
Q Consensus 257 ~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlveMa~D~ 336 (1096)
..=.-||.-+|. +..-+.|-+|-+ |.|- =.+...-||.++-..|.+||++....-..+..++ |||.+..|.
T Consensus 129 ~LAL~~I~niG~--re~~ea~~~DI~-KlLv--S~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~----riv~LL~D~ 199 (938)
T KOG1077|consen 129 CLALHCIANIGS--REMAEAFADDIP-KLLV--SGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQ----RIVHLLDDQ 199 (938)
T ss_pred HHHHHHHHhhcc--HhHHHHhhhhhH-HHHh--CCcchHHHHHHHHHHHHHHHhcCccccChhhHHH----HHHHHhCcc
Confidence 344556666663 233345555555 4432 3567888999999999999976433345566665 899999999
Q ss_pred chhHHHHHHHHHHHHHhcC
Q 001345 337 DVSVAVCAIGLVKQLLRHQ 355 (1096)
Q Consensus 337 D~~V~v~AI~Ll~~L~~~~ 355 (1096)
|.+|...|+.|+..|.+..
T Consensus 200 ~~gv~ta~~sLi~~lvk~~ 218 (938)
T KOG1077|consen 200 HMGVVTAATSLIEALVKKN 218 (938)
T ss_pred ccceeeehHHHHHHHHHcC
Confidence 9999999999999999983
No 56
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=64.10 E-value=27 Score=41.40 Aligned_cols=87 Identities=18% Similarity=0.174 Sum_probs=56.8
Q ss_pred HHHHHHHhhCc----cccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhcccCc--
Q 001345 264 QSLGVWILSYP----SFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDID-- 337 (1096)
Q Consensus 264 ~eLG~Wi~~yP----~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlveMa~D~D-- 337 (1096)
-.|..-.+.+| +..+.....+-..-+|+|. .+||.++++.+..+..+++... .|.+-=-+-+|-++.|+|
T Consensus 5 N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~-~~vraa~yRilRy~i~d~~~l~---~~~~l~id~~ii~SL~~~~~ 80 (371)
T PF14664_consen 5 NDLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDS-KEVRAAGYRILRYLISDEESLQ---ILLKLHIDIFIIRSLDRDNK 80 (371)
T ss_pred HHHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHHcCHHHHH---HHHHcCCchhhHhhhcccCC
Confidence 34445556677 4444554445445667776 9999999999999998765433 333222334455554443
Q ss_pred hhH-HHHHHHHHHHHHhc
Q 001345 338 VSV-AVCAIGLVKQLLRH 354 (1096)
Q Consensus 338 ~~V-~v~AI~Ll~~L~~~ 354 (1096)
.++ |++|++++..+.+.
T Consensus 81 ~~~ER~QALkliR~~l~~ 98 (371)
T PF14664_consen 81 NDVEREQALKLIRAFLEI 98 (371)
T ss_pred ChHHHHHHHHHHHHHHHh
Confidence 333 88999999999987
No 57
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=63.14 E-value=65 Score=41.57 Aligned_cols=151 Identities=15% Similarity=0.162 Sum_probs=102.1
Q ss_pred ccHHHHHHHHHHHHHhHHHHHHHHHhhhceeEeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCCh
Q 001345 216 PRVESLNKRLSMTHKNITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSA 295 (1096)
Q Consensus 216 ~r~e~l~~~~~e~~~~~e~ie~~i~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~ 295 (1096)
+|++++++-+.....=.. +-.++.++.+.+= -| +++++.+|--.|-..-...|+.-+- -..-+---|.|+++
T Consensus 35 ~kidAmK~iIa~M~~G~d-mssLf~dViK~~~---tr--d~ElKrL~ylYl~~yak~~P~~~lL--avNti~kDl~d~N~ 106 (757)
T COG5096 35 KKIDAMKKIIAQMSLGED-MSSLFPDVIKNVA---TR--DVELKRLLYLYLERYAKLKPELALL--AVNTIQKDLQDPNE 106 (757)
T ss_pred HHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHH---hc--CHHHHHHHHHHHHHHhccCHHHHHH--HHHHHHhhccCCCH
Confidence 466777666665542222 4455555555443 33 5689999888888777777754221 12233345789999
Q ss_pred hHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhc--CCCCCC-ChhhHHhhhcCC
Q 001345 296 SVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRH--QLLPDD-DLGPLYDLLIDD 372 (1096)
Q Consensus 296 ~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlveMa~D~D~~V~v~AI~Ll~~L~~~--~~L~~e-d~~~V~~Lvfd~ 372 (1096)
.+|..+|+.|..|= ...+..-+-+-|.....|...-||-.|+=-+..|++. .+..+. -++..-.|++|+
T Consensus 107 ~iR~~AlR~ls~l~--------~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~ 178 (757)
T COG5096 107 EIRGFALRTLSLLR--------VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADS 178 (757)
T ss_pred HHHHHHHHHHHhcC--------hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCC
Confidence 99999999998772 2334444555777778899999999999999999976 355555 566666788899
Q ss_pred ChHHHHHHHH
Q 001345 373 PPEIRRAIGE 382 (1096)
Q Consensus 373 ~~~Vr~AAg~ 382 (1096)
+|.|-.+|--
T Consensus 179 dP~Vi~nAl~ 188 (757)
T COG5096 179 DPIVIANALA 188 (757)
T ss_pred CchHHHHHHH
Confidence 8887655543
No 58
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.13 E-value=15 Score=46.46 Aligned_cols=105 Identities=19% Similarity=0.328 Sum_probs=80.1
Q ss_pred hhhceeEeccccCCChhHHHHHHHHHHH-HHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcC-CCcccH
Q 001345 241 KIFTGLFVHRYRDIDPNIRMSCIQSLGV-WILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVD-DNVPTL 318 (1096)
Q Consensus 241 ~iF~~VFvhRyRDv~p~IR~~Ci~eLG~-Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~-~~~~~L 318 (1096)
.++-..|++-|-|=+|.||..-+..+|. |+.. +...+..-+.-.|.|.++-||..+.-...++|..+ +....
T Consensus 85 ~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~-----i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~- 158 (734)
T KOG1061|consen 85 ILAVNTFLKDCEDPNPLIRALALRTMGCLRVDK-----ITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVED- 158 (734)
T ss_pred HhhhhhhhccCCCCCHHHHHHHhhceeeEeehH-----HHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccc-
Confidence 3455679999999999999999998882 2222 22335566788999999999999999999999643 22111
Q ss_pred HHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhcC
Q 001345 319 GLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQ 355 (1096)
Q Consensus 319 ~lFt~RFk~RlveMa~D~D~~V~v~AI~Ll~~L~~~~ 355 (1096)
.- |-+-+-+|..|.|+.|.+.|+..|..|.+..
T Consensus 159 ~g----l~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 159 SG----LVDALKDLLSDSNPMVVANALAALSEIHESH 191 (734)
T ss_pred cc----hhHHHHHHhcCCCchHHHHHHHHHHHHHHhC
Confidence 11 4456677778999999999999999999863
No 59
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=62.80 E-value=32 Score=43.03 Aligned_cols=100 Identities=20% Similarity=0.242 Sum_probs=78.3
Q ss_pred CChhHHHHH--HHHHHHHHhhCc---cccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHH
Q 001345 254 IDPNIRMSC--IQSLGVWILSYP---SFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNR 328 (1096)
Q Consensus 254 v~p~IR~~C--i~eLG~Wi~~yP---~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~R 328 (1096)
.+|+||... +-+|..-...|. +.|+.....+-+--++.|+.+.+|...+..|..+-=+.+. ..-..|..||..|
T Consensus 429 ~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de-~~k~~~~~ki~a~ 507 (678)
T KOG1293|consen 429 MDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDE-EEKFQLLAKIPAN 507 (678)
T ss_pred hCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchH-HHHHHHHHHhhHH
Confidence 578877654 455666666664 4699999999999999999999999999999999433332 2345677888877
Q ss_pred Hhhhc-ccCchhHHHHHHHHHHHHHhc
Q 001345 329 MIELA-DDIDVSVAVCAIGLVKQLLRH 354 (1096)
Q Consensus 329 lveMa-~D~D~~V~v~AI~Ll~~L~~~ 354 (1096)
.+-|- .|.|++|.+++.+|+..+.-.
T Consensus 508 ~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 508 LILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 77666 999999999999998877644
No 60
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=60.83 E-value=51 Score=39.69 Aligned_cols=111 Identities=14% Similarity=0.001 Sum_probs=82.9
Q ss_pred eccc-cCCChhHHHHHHHHHHHHHhhCccccccchh-hhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHH
Q 001345 248 VHRY-RDIDPNIRMSCIQSLGVWILSYPSFFLQDLY-LKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERF 325 (1096)
Q Consensus 248 vhRy-RDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~Y-LKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RF 325 (1096)
+..+ .|-+++.|..|+-.|+.| ++.- +.-+-=.|.|.++.||..+.++|..+.... -
T Consensus 60 ~~aL~~d~~~ev~~~aa~al~~~---------~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~------------a 118 (410)
T TIGR02270 60 VSALAEADEPGRVACAALALLAQ---------EDALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQ------------A 118 (410)
T ss_pred HHHHhhCCChhHHHHHHHHHhcc---------CChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchH------------H
Confidence 3344 377799999988888766 2223 677777899999999999999998775321 3
Q ss_pred HHHHhhhcccCchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcCCChHHHHHHHHHHH
Q 001345 326 SNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVY 385 (1096)
Q Consensus 326 k~RlveMa~D~D~~V~v~AI~Ll~~L~~~~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~ 385 (1096)
...|+.+..|.|+.|+..++.++.... .+ =...+..++=|.++.||.+|..-+-
T Consensus 119 ~~~L~~~L~~~~p~vR~aal~al~~r~-~~-----~~~~L~~~L~d~d~~Vra~A~raLG 172 (410)
T TIGR02270 119 EPWLEPLLAASEPPGRAIGLAALGAHR-HD-----PGPALEAALTHEDALVRAAALRALG 172 (410)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhc-cC-----hHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 457888888999999999987776622 11 1346667777999999999988764
No 61
>smart00229 RasGEFN Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal motif. A subset of guanine nucleotide exchange factor for Ras-like small GTPases appear to possess this domain N-terminal to the RasGef (Cdc25-like) domain. The recent crystal structureof Sos shows that this domain is alpha-helical and plays a "purely structural role" (Nature 394, 337-343).
Probab=59.66 E-value=14 Score=36.24 Aligned_cols=50 Identities=22% Similarity=0.297 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHHhhCccccccchh-----hhhhhhhcCCCChhHHHHHHHHHH
Q 001345 257 NIRMSCIQSLGVWILSYPSFFLQDLY-----LKYLGWTLNDKSASVRKSSVLALQ 306 (1096)
Q Consensus 257 ~IR~~Ci~eLG~Wi~~yP~~FL~d~Y-----LKYlGW~L~Dk~~~VR~~~L~aL~ 306 (1096)
.||.-++.-|..|+..||.-|-++.. ..++.+.-.++.+..+..+...+.
T Consensus 70 ~~~~rv~~~l~~Wv~~~~~dF~~~~~l~~~l~~f~~~~~~~~~~~~~~~l~~~~~ 124 (127)
T smart00229 70 RVKNRVLNILRHWVENYWQDFEDDPKLILRLLEFLDLVDQEKGPGLVTSLQELLQ 124 (127)
T ss_pred HHHHHHHHHHHHHHHHCCcccccCHHHHHHHHHHHHHHhhCcCCCHHHHHHHHHH
Confidence 38888999999999999998887753 235555555555555555544443
No 62
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=59.15 E-value=1.2e+02 Score=37.95 Aligned_cols=108 Identities=19% Similarity=0.112 Sum_probs=74.1
Q ss_pred hCcc-ccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccH-HHHHHHHHHHHhhhcccCchhHHHHHHHHHH
Q 001345 272 SYPS-FFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTL-GLFTERFSNRMIELADDIDVSVAVCAIGLVK 349 (1096)
Q Consensus 272 ~yP~-~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L-~lFt~RFk~RlveMa~D~D~~V~v~AI~Ll~ 349 (1096)
..|. .=+=+..++|+--.+--|...||..|++.|..+-.+- .-+ +...+-.+..|.+-..|.+..||.+|+..|+
T Consensus 81 ~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v---~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~ 157 (885)
T COG5218 81 DDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVV---REIDEVLANGLLEKLSERLFDREKAVRREAVKVLC 157 (885)
T ss_pred CChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhc---chHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 4455 3344567899999999999999999999999887531 111 1122335556666668999999999999999
Q ss_pred HHHhcCCCCCCChhhHHhhh--cCCChHHHHHHHH
Q 001345 350 QLLRHQLLPDDDLGPLYDLL--IDDPPEIRRAIGE 382 (1096)
Q Consensus 350 ~L~~~~~L~~ed~~~V~~Lv--fd~~~~Vr~AAg~ 382 (1096)
.+.+...=++.++..+...+ .|....||++|--
T Consensus 158 ~~Qe~~~neen~~~n~l~~~vqnDPS~EVRr~all 192 (885)
T COG5218 158 YYQEMELNEENRIVNLLKDIVQNDPSDEVRRLALL 192 (885)
T ss_pred HHHhccCChHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 88865422222343432222 2788889998863
No 63
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.43 E-value=49 Score=42.74 Aligned_cols=134 Identities=19% Similarity=0.188 Sum_probs=95.2
Q ss_pred CCChhHHHHHHHHHHHHHhhC-cc-ccccchhhhhhhhhcCCCChhHHHHHHH---HHHhhhhc--------------C-
Q 001345 253 DIDPNIRMSCIQSLGVWILSY-PS-FFLQDLYLKYLGWTLNDKSASVRKSSVL---ALQNLYEV--------------D- 312 (1096)
Q Consensus 253 Dv~p~IR~~Ci~eLG~Wi~~y-P~-~FL~d~YLKYlGW~L~Dk~~~VR~~~L~---aL~~Ly~~--------------~- 312 (1096)
|=-+-||.--+..|..|+.+. |. .-..-.-|+.+-=+|-|.++=|=+.|++ .|..+|.. +
T Consensus 738 d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL~e~Y~s~k~k 817 (982)
T KOG4653|consen 738 DDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPDLSEEYLSEKKK 817 (982)
T ss_pred CCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHHHHHHHHhcccC
Confidence 455679999999999999843 32 2334456777777899999999999999 55555511 1
Q ss_pred ---CCc-----------ccHHHHHHHHHHHHhhhc----ccCchhHHHHHHHHHHHHHhc--CCCCCCChhhHHhhhc--
Q 001345 313 ---DNV-----------PTLGLFTERFSNRMIELA----DDIDVSVAVCAIGLVKQLLRH--QLLPDDDLGPLYDLLI-- 370 (1096)
Q Consensus 313 ---~~~-----------~~L~lFt~RFk~RlveMa----~D~D~~V~v~AI~Ll~~L~~~--~~L~~ed~~~V~~Lvf-- 370 (1096)
+.+ ..++....+|+.+|+.-+ +|.|..-|..++..+..+.+. +.+++ ....|...|.
T Consensus 818 ~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd-~~~ev~~~Il~l 896 (982)
T KOG4653|consen 818 LQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSD-FFHEVLQLILSL 896 (982)
T ss_pred CCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHH
Confidence 111 123345677888887755 588888899999988888885 34444 5555555554
Q ss_pred ---CCChHHHHHHHHHHHHH
Q 001345 371 ---DDPPEIRRAIGELVYDH 387 (1096)
Q Consensus 371 ---d~~~~Vr~AAg~fv~~~ 387 (1096)
|..+.+|+||+..+..-
T Consensus 897 ~~~d~s~~vRRaAv~li~~l 916 (982)
T KOG4653|consen 897 ETTDGSVLVRRAAVHLLAEL 916 (982)
T ss_pred HccCCchhhHHHHHHHHHHH
Confidence 88999999999988753
No 64
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=54.90 E-value=1.8e+02 Score=28.61 Aligned_cols=49 Identities=16% Similarity=0.319 Sum_probs=37.3
Q ss_pred ChhHHHHHHHHHHHHHhhCcc-ccccchhhhhhhhhcCCCChhHHHHHHHHH
Q 001345 255 DPNIRMSCIQSLGVWILSYPS-FFLQDLYLKYLGWTLNDKSASVRKSSVLAL 305 (1096)
Q Consensus 255 ~p~IR~~Ci~eLG~Wi~~yP~-~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL 305 (1096)
.+++...|++.++.|+.-.|. .+.+..++..+.-.|++. ..|..|+..|
T Consensus 99 ~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~--~~~~~A~~cl 148 (148)
T PF08389_consen 99 NEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSP--ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSC--CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCH--HHHHHHHHhC
Confidence 699999999999999997755 455667999998888444 4477776543
No 65
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=53.66 E-value=1.2e+02 Score=41.54 Aligned_cols=98 Identities=20% Similarity=0.352 Sum_probs=74.3
Q ss_pred eccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHH
Q 001345 248 VHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSN 327 (1096)
Q Consensus 248 vhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~ 327 (1096)
..|+-|....+|-.-++-+|.++..+|+...+ |---+.--..|+...||..|++.|..+|... +.+..+++ -.-
T Consensus 861 h~R~~DssasVREAaldLvGrfvl~~~e~~~q--yY~~i~erIlDtgvsVRKRvIKIlrdic~e~---pdf~~i~~-~ca 934 (1692)
T KOG1020|consen 861 HGRLNDSSASVREAALDLVGRFVLSIPELIFQ--YYDQIIERILDTGVSVRKRVIKILRDICEET---PDFSKIVD-MCA 934 (1692)
T ss_pred HHhhccchhHHHHHHHHHHhhhhhccHHHHHH--HHHHHHhhcCCCchhHHHHHHHHHHHHHHhC---CChhhHHH-HHH
Confidence 46888999999999999999999999987654 5566666789999999999999999999643 33334444 333
Q ss_pred HHhhhcccCchhHHHHHHHHHHHH
Q 001345 328 RMIELADDIDVSVAVCAIGLVKQL 351 (1096)
Q Consensus 328 RlveMa~D~D~~V~v~AI~Ll~~L 351 (1096)
||+.-..|-+-+|.-.+...+..+
T Consensus 935 kmlrRv~DEEg~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 935 KMLRRVNDEEGNIKKLVRETFLKL 958 (1692)
T ss_pred HHHHHhccchhHHHHHHHHHHHHH
Confidence 555555787777776666655444
No 66
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=52.82 E-value=15 Score=29.86 Aligned_cols=41 Identities=24% Similarity=0.212 Sum_probs=34.5
Q ss_pred HHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHH
Q 001345 265 SLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLAL 305 (1096)
Q Consensus 265 eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL 305 (1096)
.|+.-+...|...-.+.-++-+.--|.|.++.||.+++..|
T Consensus 2 ~l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 2 ALSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 35666677888888888999999999999999999998753
No 67
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=52.54 E-value=16 Score=36.63 Aligned_cols=47 Identities=17% Similarity=0.153 Sum_probs=40.6
Q ss_pred HHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhc
Q 001345 263 IQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEV 311 (1096)
Q Consensus 263 i~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~ 311 (1096)
++||..|...-|..|.+ -+-||.-=|+|+++.|.++||+.|..|...
T Consensus 22 ~~Eia~~t~~s~~~~~e--i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~ 68 (122)
T cd03572 22 YEEIAKLTRKSVGSCQE--LLEYLLKRLKRSSPHVKLKVLKIIKHLCEK 68 (122)
T ss_pred HHHHHHHHHcCHHHHHH--HHHHHHHHhcCCCCcchHHHHHHHHHHHhh
Confidence 57888888887777764 788999999999999999999999999864
No 68
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.86 E-value=88 Score=42.98 Aligned_cols=107 Identities=22% Similarity=0.222 Sum_probs=81.9
Q ss_pred ccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhh-hhcCCCChhHHHHHHHHHHhh-hhcCCCcccHHHHHHHHH
Q 001345 249 HRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLG-WTLNDKSASVRKSSVLALQNL-YEVDDNVPTLGLFTERFS 326 (1096)
Q Consensus 249 hRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlG-W~L~Dk~~~VR~~~L~aL~~L-y~~~~~~~~L~lFt~RFk 326 (1096)
.=|||++-.+++.=+...-.| ..++..=+.+.+++-|+ -+..+.+-.||.++|+-++-. |.+. ++ ..+.=-+-..
T Consensus 1495 ~~y~~~d~a~~~a~~~~~lm~-~~~~~~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~-Fv-~~~~~r~dI~ 1571 (1710)
T KOG1851|consen 1495 NTYRDVDLAKNSALLCHSLMS-LSWIGHHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNI-FV-SQELRRDDIR 1571 (1710)
T ss_pred cccccchHHHHHHHHHHHHHH-hhccchhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHh-hc-ccchhHHHHH
Confidence 358999999998877777777 57888889999999999 566667889999999988865 5432 11 1222223345
Q ss_pred HHHhhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 001345 327 NRMIELADDIDVSVAVCAIGLVKQLLRHQLLP 358 (1096)
Q Consensus 327 ~RlveMa~D~D~~V~v~AI~Ll~~L~~~~~L~ 358 (1096)
.++.+...|.+.+|+.+|..+|..|.+.+.+.
T Consensus 1572 ~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~ 1603 (1710)
T KOG1851|consen 1572 KLLESLLNDDQIEVREEAAKCLSGLLQGSKFQ 1603 (1710)
T ss_pred HHHHHHHcchHHHHHHHHHHHHHHHHhccccc
Confidence 57777778999999999999999999986554
No 69
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=49.67 E-value=5.1e+02 Score=32.68 Aligned_cols=94 Identities=20% Similarity=0.226 Sum_probs=57.4
Q ss_pred hhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhc-----CCCCCCCh
Q 001345 288 WTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRH-----QLLPDDDL 362 (1096)
Q Consensus 288 W~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlveMa~D~D~~V~v~AI~Ll~~L~~~-----~~L~~ed~ 362 (1096)
-..+|+.+.||.++..+...+-..=. ...+..|.- +=|..|- +.-+.--+.+++++..|..+ .+.-++=+
T Consensus 223 ~~~~d~~~~Vr~Aa~~a~kai~~~~~-~~aVK~llp---sll~~l~-~~kWrtK~aslellg~m~~~ap~qLs~~lp~ii 297 (569)
T KOG1242|consen 223 TNFGDKINKVREAAVEAAKAIMRCLS-AYAVKLLLP---SLLGSLL-EAKWRTKMASLELLGAMADCAPKQLSLCLPDLI 297 (569)
T ss_pred HHhhccchhhhHHHHHHHHHHHHhcC-cchhhHhhh---hhHHHHH-HHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhh
Confidence 34789999999998887777654311 112222211 1111121 22455667777877777776 12223334
Q ss_pred hhHHhhhcCCChHHHHHHHHHHHH
Q 001345 363 GPLYDLLIDDPPEIRRAIGELVYD 386 (1096)
Q Consensus 363 ~~V~~Lvfd~~~~Vr~AAg~fv~~ 386 (1096)
-.+.+-++|.+|.||+|+-+-+..
T Consensus 298 P~lsevl~DT~~evr~a~~~~l~~ 321 (569)
T KOG1242|consen 298 PVLSEVLWDTKPEVRKAGIETLLK 321 (569)
T ss_pred HHHHHHHccCCHHHHHHHHHHHHH
Confidence 467788899999999999887653
No 70
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.16 E-value=5e+02 Score=33.88 Aligned_cols=117 Identities=18% Similarity=0.155 Sum_probs=79.9
Q ss_pred ChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhcc
Q 001345 255 DPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELAD 334 (1096)
Q Consensus 255 ~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlveMa~ 334 (1096)
+++|+.+.--.|-.+-..-|+.=|= -..||--.|.|+++.+|.-+|+.|..+ +.+-.++-+-+=+ -+.+.
T Consensus 84 n~EVKkLVyvYLlrYAEeqpdLALL--SIntfQk~L~DpN~LiRasALRvlSsI-Rvp~IaPI~llAI-------k~~~~ 153 (968)
T KOG1060|consen 84 NIEVKKLVYVYLLRYAEEQPDLALL--SINTFQKALKDPNQLIRASALRVLSSI-RVPMIAPIMLLAI-------KKAVT 153 (968)
T ss_pred CHHHHHHHHHHHHHHhhcCCCceee--eHHHHHhhhcCCcHHHHHHHHHHHHhc-chhhHHHHHHHHH-------HHHhc
Confidence 6788888888887777777775442 246788999999999999999999877 2333333333222 23457
Q ss_pred cCchhHHHHHHHHHHHHHhcCCCCCCCh-hhHHhhhcCCChHHHHHHH
Q 001345 335 DIDVSVAVCAIGLVKQLLRHQLLPDDDL-GPLYDLLIDDPPEIRRAIG 381 (1096)
Q Consensus 335 D~D~~V~v~AI~Ll~~L~~~~~L~~ed~-~~V~~Lvfd~~~~Vr~AAg 381 (1096)
|.-+-||-.|-.-+..|+..+-=.-+++ +-|-.|+-|..|.|.-+|+
T Consensus 154 D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~~LLaD~splVvgsAv 201 (968)
T KOG1060|consen 154 DPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIKKLLADRSPLVVGSAV 201 (968)
T ss_pred CCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHHHHhcCCCCcchhHHH
Confidence 8888999999998888888752111233 3445566677777665554
No 71
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=48.27 E-value=59 Score=30.95 Aligned_cols=61 Identities=25% Similarity=0.258 Sum_probs=47.5
Q ss_pred cCCCChhHHHHHHHHHHhhhhcCC-CcccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhc
Q 001345 290 LNDKSASVRKSSVLALQNLYEVDD-NVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRH 354 (1096)
Q Consensus 290 L~Dk~~~VR~~~L~aL~~Ly~~~~-~~~~L~lFt~RFk~RlveMa~D~D~~V~v~AI~Ll~~L~~~ 354 (1096)
|+|+.+.||..+|..|.+|.+.++ .... ..+.-.-+.++..|.|+=|=..||+.+..|...
T Consensus 12 L~dp~~PvRa~gL~~L~~Li~~~~~~~~~----~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~ 73 (92)
T PF10363_consen 12 LNDPLPPVRAHGLVLLRKLIESKSEPVID----IPKILDLFLSQLKDEDSYVYLNAIKGLAALADR 73 (92)
T ss_pred ccCCCcchHHHHHHHHHHHHHcCCcchhh----HHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence 799999999999999999998876 2222 222333444566799999999999999988775
No 72
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.20 E-value=83 Score=37.50 Aligned_cols=81 Identities=25% Similarity=0.171 Sum_probs=64.8
Q ss_pred hhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHH-HHHHHHHHHHhhhcccCchhHHHHHHHHHH
Q 001345 271 LSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLG-LFTERFSNRMIELADDIDVSVAVCAIGLVK 349 (1096)
Q Consensus 271 ~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~-lFt~RFk~RlveMa~D~D~~V~v~AI~Ll~ 349 (1096)
..++..+-..-+||-+--.+.--++.||..++..|..+... ....+. +-+. .-+.+.+|..|.|..||-..++++.
T Consensus 48 ~~~~~t~~k~ltlkeLl~qlkHhNakvRkdal~glkd~l~s--~p~~l~~~~~~-ll~~~~~~i~D~~~~vR~~~~qll~ 124 (393)
T KOG2149|consen 48 DSGLATSKKGLTLKELLSQLKHHNAKVRKDALNGLKDLLKS--HPAELQSHLYA-LLQKLRELILDDDSLVRDALYQLLD 124 (393)
T ss_pred ccCCccccccccHHHHHhhhcCchHhhhHHHHHHHHHHHHh--ChHHHHHHHHH-HHHHhhhhhcCccccHHHHHHHHHH
Confidence 46777888888999999999999999999999999999875 222332 3333 3347889999999999999999998
Q ss_pred HHHhc
Q 001345 350 QLLRH 354 (1096)
Q Consensus 350 ~L~~~ 354 (1096)
.+.-+
T Consensus 125 ~~i~~ 129 (393)
T KOG2149|consen 125 SLILP 129 (393)
T ss_pred HHHhh
Confidence 86555
No 73
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=47.25 E-value=1.4e+02 Score=31.05 Aligned_cols=61 Identities=21% Similarity=0.333 Sum_probs=46.9
Q ss_pred HHHHHhHHHHHHHHHHHHcccCCC----------ccHHHHHHHHHHHHHhHHHHHHHHHhhhceeEecccc
Q 001345 192 KMLGAQRETTQRQLNAEKKKRVEG----------PRVESLNKRLSMTHKNITDLEDMMRKIFTGLFVHRYR 252 (1096)
Q Consensus 192 ~~l~~~~~~~qrQleaEk~K~~~~----------~r~e~l~~~~~e~~~~~e~ie~~i~~iF~~VFvhRyR 252 (1096)
..+...+.+.+|+|+.-.+.+.++ ..++.+++..++.+++++.+++.+..-+..|=++||.
T Consensus 19 ~~~~~kl~kl~r~Y~~lm~g~~~~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~kvgvvRYn 89 (151)
T PF14584_consen 19 IILNIKLRKLKRRYDALMRGKDGKNLEDLLNELFDQIDELKEELEELEKRIEELEEKLRNCVQKVGVVRYN 89 (151)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEEEcc
Confidence 344556777888887765443221 3566778888899999999999999999999999995
No 74
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.50 E-value=3.9e+02 Score=35.14 Aligned_cols=166 Identities=20% Similarity=0.200 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcccCCCccH---HHHHHHHHHHHHhHHHHHHHHHhhhceeEeccccCCCh
Q 001345 180 GLQLVTSFISVAKMLGAQRETTQRQLNAEKKKRVEGPRV---ESLNKRLSMTHKNITDLEDMMRKIFTGLFVHRYRDIDP 256 (1096)
Q Consensus 180 aL~l~taLv~va~~l~~~~~~~qrQleaEk~K~~~~~r~---e~l~~~~~e~~~~~e~ie~~i~~iF~~VFvhRyRDv~p 256 (1096)
|++.+++||++ .=.+-+..+.-+|+.+++|.....|+ |++-+-+.+.- +-+..+.. ..-..|..=.||-+.
T Consensus 788 aI~gv~~Lcev--y~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~G---el~~~y~~-~Li~tfl~gvrepd~ 861 (982)
T KOG4653|consen 788 AIRGVVSLCEV--YPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALG---ELVFKYKA-VLINTFLSGVREPDH 861 (982)
T ss_pred HHHHHHHHHHh--cchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhc---cHHHHHHH-HHHHHHHHhcCCchH
Confidence 55666788887 22333556677888888775333333 23322222111 11111111 111234444455555
Q ss_pred hHHHHHHHHHHHHHhhCc---cccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhh-c-CCCcccHHH-HHHHHHHHHh
Q 001345 257 NIRMSCIQSLGVWILSYP---SFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYE-V-DDNVPTLGL-FTERFSNRMI 330 (1096)
Q Consensus 257 ~IR~~Ci~eLG~Wi~~yP---~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~-~-~~~~~~L~l-Ft~RFk~Rlv 330 (1096)
.-|+..+..||.-+.... +.|+-...-+.+.-.--|.+.-||-+|+.-|..|.. . .+..+-++. -.+..+.-.=
T Consensus 862 ~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~ 941 (982)
T KOG4653|consen 862 EFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLS 941 (982)
T ss_pred HHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHH
Confidence 559999999999888775 445555555677777789999999999999988863 2 233333322 3355554444
Q ss_pred hhcccCchhHHHHHHHHHHHH
Q 001345 331 ELADDIDVSVAVCAIGLVKQL 351 (1096)
Q Consensus 331 eMa~D~D~~V~v~AI~Ll~~L 351 (1096)
-|+.+.|..++..|-.-+..|
T Consensus 942 ~vr~~~dd~~klhaql~leei 962 (982)
T KOG4653|consen 942 YVRQHDDDGLKLHAQLCLEEI 962 (982)
T ss_pred HHhcCchhHHHHHHHHHHHHH
Confidence 455677777766655444433
No 75
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=41.04 E-value=45 Score=29.12 Aligned_cols=43 Identities=16% Similarity=0.288 Sum_probs=31.8
Q ss_pred hhhHHHHHhcCCCCHHHHHHHHHHHHhhCcHHHHHHHHHHHHHh
Q 001345 38 ELSLIEVIKGNGKLIPQVVKLWVERYEKDAKPAIAELLTMLFEA 81 (1096)
Q Consensus 38 ~~~L~~~v~~~~~~i~~va~~Wie~Y~~d~~~Al~eLinfil~~ 81 (1096)
...+++.+ +++.+++++++...+.|..+++.+-.++..|+-+.
T Consensus 19 a~~Iw~~~-~g~~t~~ei~~~l~~~y~~~~~~~~~dv~~fl~~L 61 (68)
T PF05402_consen 19 AAFIWELL-DGPRTVEEIVDALAEEYDVDPEEAEEDVEEFLEQL 61 (68)
T ss_dssp HHHHHHH---SSS-HHHHHHHHHHHTT--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHc-cCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 44588888 57789999999999999999998888888887543
No 76
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=38.51 E-value=1.9e+02 Score=36.11 Aligned_cols=119 Identities=22% Similarity=0.305 Sum_probs=76.8
Q ss_pred ChhHHHHHHHHHHHHHhhC----cc--ccccchhhhhhh----hhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHH
Q 001345 255 DPNIRMSCIQSLGVWILSY----PS--FFLQDLYLKYLG----WTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTER 324 (1096)
Q Consensus 255 ~p~IR~~Ci~eLG~Wi~~y----P~--~FL~d~YLKYlG----W~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~R 324 (1096)
.|.+|.-|+-.+|.=+..+ |. .++-..|++|+. ....+++...+..+|++|.++= .+..+..+..|.
T Consensus 410 ~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g-~~~~i~~l~~~l-- 486 (574)
T smart00638 410 QPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAG-HPSSIKVLEPYL-- 486 (574)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccC-ChhHHHHHHHhc--
Confidence 5689999999999877644 22 233345666655 5556778888999999998773 232222222222
Q ss_pred HHHHHhhhcccCchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhc---CCChHHHHHHHHHHH
Q 001345 325 FSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLI---DDPPEIRRAIGELVY 385 (1096)
Q Consensus 325 Fk~RlveMa~D~D~~V~v~AI~Ll~~L~~~~~L~~ed~~~V~~Lvf---d~~~~Vr~AAg~fv~ 385 (1096)
.-..+....+|+.||.-+..+.+. .++.+..+.--|| +.++.||.||.-.+.
T Consensus 487 ------~~~~~~~~~iR~~Av~Alr~~a~~---~p~~v~~~l~~i~~n~~e~~EvRiaA~~~lm 541 (574)
T smart00638 487 ------EGAEPLSTFIRLAAILALRNLAKR---DPRKVQEVLLPIYLNRAEPPEVRMAAVLVLM 541 (574)
T ss_pred ------CCCCCCCHHHHHHHHHHHHHHHHh---CchHHHHHHHHHHcCCCCChHHHHHHHHHHH
Confidence 212567788999999988877653 3444444433344 578889998876654
No 77
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=38.02 E-value=1.3e+02 Score=34.56 Aligned_cols=109 Identities=24% Similarity=0.311 Sum_probs=68.6
Q ss_pred CCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhh
Q 001345 253 DIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIEL 332 (1096)
Q Consensus 253 Dv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlveM 332 (1096)
|-+|.+|..++..|| .......+--.+++.-.|.+..||..|..+|.++..... -.-++++
T Consensus 85 d~~~~vr~~a~~aLg-------~~~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a------------~~~l~~~ 145 (335)
T COG1413 85 DEDPRVRDAAADALG-------ELGDPEAVPPLVELLENDENEGVRAAAARALGKLGDERA------------LDPLLEA 145 (335)
T ss_pred CCCHHHHHHHHHHHH-------ccCChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhh------------hHHHHHH
Confidence 444489999999888 333333343444444449999999999999999874321 1134444
Q ss_pred cccCc------------hhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcCCChHHHHHHHHHHH
Q 001345 333 ADDID------------VSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVY 385 (1096)
Q Consensus 333 a~D~D------------~~V~v~AI~Ll~~L~~~~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~ 385 (1096)
..|.+ ..|+..|+..+..+ | ++..+..+-.++-+....||.+|+.-+.
T Consensus 146 l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~---~--~~~~~~~l~~~l~~~~~~vr~~Aa~aL~ 205 (335)
T COG1413 146 LQDEDSGSAAAALDAALLDVRAAAAEALGEL---G--DPEAIPLLIELLEDEDADVRRAAASALG 205 (335)
T ss_pred hccchhhhhhhhccchHHHHHHHHHHHHHHc---C--ChhhhHHHHHHHhCchHHHHHHHHHHHH
Confidence 44433 24566565543332 2 4555666777777888888888876544
No 78
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.19 E-value=1e+03 Score=30.70 Aligned_cols=106 Identities=17% Similarity=0.203 Sum_probs=75.2
Q ss_pred hCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHH
Q 001345 272 SYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQL 351 (1096)
Q Consensus 272 ~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlveMa~D~D~~V~v~AI~Ll~~L 351 (1096)
+-|-.++=+.+|.|+-- .+|..|..++.-+....=.. ...+-.=+++|-+-+-.++.|.|++||-+-.+-+..|
T Consensus 169 ~rpl~~mipkfl~f~~h----~spkiRs~A~~cvNq~i~~~--~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~L 242 (885)
T KOG2023|consen 169 TRPLNIMIPKFLQFFKH----PSPKIRSHAVGCVNQFIIIQ--TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFL 242 (885)
T ss_pred cCchHHhHHHHHHHHhC----CChhHHHHHHhhhhheeecC--cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 56777777888888765 49999999998776654221 2334445566667888999999999999999988888
Q ss_pred Hhc--CCCCCCChhhHH----hhhcCCChHHHHHHHHHH
Q 001345 352 LRH--QLLPDDDLGPLY----DLLIDDPPEIRRAIGELV 384 (1096)
Q Consensus 352 ~~~--~~L~~ed~~~V~----~Lvfd~~~~Vr~AAg~fv 384 (1096)
++. +-|-+ ....|. +..-|.+..|+-.|-+|.
T Consensus 243 levr~dkl~p-hl~~IveyML~~tqd~dE~VALEACEFw 280 (885)
T KOG2023|consen 243 LEVRPDKLVP-HLDNIVEYMLQRTQDVDENVALEACEFW 280 (885)
T ss_pred HHhcHHhccc-chHHHHHHHHHHccCcchhHHHHHHHHH
Confidence 875 22222 233443 344488888999999994
No 79
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=35.96 E-value=7e+02 Score=28.39 Aligned_cols=207 Identities=16% Similarity=0.173 Sum_probs=103.2
Q ss_pred HHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhc-ccCchhHHHHHHHHHHHHHhcCC-CCCCChhhHHhhhcCCChHHH
Q 001345 300 SSVLALQNLYEVDDNVPTLGLFTERFSNRMIELA-DDIDVSVAVCAIGLVKQLLRHQL-LPDDDLGPLYDLLIDDPPEIR 377 (1096)
Q Consensus 300 ~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlveMa-~D~D~~V~v~AI~Ll~~L~~~~~-L~~ed~~~V~~Lvfd~~~~Vr 377 (1096)
+||..++.+.++-...-.=.....-.-+.||.=+ .-.|..||..|++.+....=.+. +..+-+.-+...+-.++..|+
T Consensus 2 kcL~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~ 81 (298)
T PF12719_consen 2 KCLSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVK 81 (298)
T ss_pred cHHHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHH
Confidence 4666666666543210000011112334555434 66778998888887665543321 111112222222324599999
Q ss_pred HHHHHHHHHHHHHhhhcCcccCCCCCCCCchhhhHhHHHHHHHhccC--CCchhhhHHhhhcc--ccCCCCChHH-HHHH
Q 001345 378 RAIGELVYDHLIAQKFNSSQSGLKGKDNDSSEVHLGRMLQILREFSA--DPILSIYVIDDVWE--YMKAMKDWKC-IISM 452 (1096)
Q Consensus 378 ~AAg~fv~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~f~~--~~~~~~ylVDsLwd--~~~~lkDWe~-m~~~ 452 (1096)
..|.+-+++-+..-+.... ......+ .......+++++..+-. +++..+.+++++-. -.+.+.+|.. +..+
T Consensus 82 ~~al~~l~Dll~~~g~~~~--~~~~~~~--~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~L 157 (298)
T PF12719_consen 82 ITALKALFDLLLTHGIDIF--DSESDND--ESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRL 157 (298)
T ss_pred HHHHHHHHHHHHHcCchhc--cchhccC--ccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 9999988886654221111 1111100 11122234444433322 33445566777655 3466777444 4444
Q ss_pred Hc--CCCCCCCCCchhhHHHHHHHHHHHHHHhcCCCCCCCCCCCccchhhhhhhhhhhHHHHHHHHHHHhHHHHHHHhc-
Q 001345 453 LL--DENPLIDLNDDDATNLIRLLSASVKKAVGERIVPASDNRKPYYNKAQKEVFENNKREITRAMMKNYPRLLRKFMA- 529 (1096)
Q Consensus 453 LL--~d~~~~~L~~~~e~~LieiL~asVrqa~ge~~~~~~~~Rk~~~~~~~k~~~~~~~~~iT~~li~~LP~LL~Ky~a- 529 (1096)
++ .++. ..+...|-++|.-...--+.. . .+.++.+.+.++|.+-.+...+..
T Consensus 158 ll~yF~p~-----t~~~~~LrQ~L~~Ffp~y~~s--------------~------~~~Q~~l~~~f~~~l~~~~~~~~~~ 212 (298)
T PF12719_consen 158 LLLYFNPS-----TEDNQRLRQCLSVFFPVYASS--------------S------PENQERLAEAFLPTLRTLSNAPDEL 212 (298)
T ss_pred HHHHcCcc-----cCCcHHHHHHHHHHHHHHHcC--------------C------HHHHHHHHHHHHHHHHHHHhCcccc
Confidence 44 2332 122234555555555443210 0 135678999999999998888876
Q ss_pred -Cccchh
Q 001345 530 -DKAKVP 535 (1096)
Q Consensus 530 -d~ekv~ 535 (1096)
++....
T Consensus 213 ~~~~~~v 219 (298)
T PF12719_consen 213 DSPLAMV 219 (298)
T ss_pred cCchhhC
Confidence 444433
No 80
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=35.92 E-value=7.5e+02 Score=28.66 Aligned_cols=101 Identities=20% Similarity=0.201 Sum_probs=70.1
Q ss_pred CCChhHHHHHHHHHHHHHhhCccccccchhh---hhhh--hhcC----CC---------ChhHHHHHHHHHHhhhhcCCC
Q 001345 253 DIDPNIRMSCIQSLGVWILSYPSFFLQDLYL---KYLG--WTLN----DK---------SASVRKSSVLALQNLYEVDDN 314 (1096)
Q Consensus 253 Dv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YL---KYlG--W~L~----Dk---------~~~VR~~~L~aL~~Ly~~~~~ 314 (1096)
...+.+|+.|+..||.---. ..-=.+.+. .-+. |.+. |. ++.|..++|.+-.-|...-+.
T Consensus 142 s~~~~~R~~~~~aLai~~fv--~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~ 219 (309)
T PF05004_consen 142 SASPKARAACLEALAICTFV--GGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPD 219 (309)
T ss_pred ccchHHHHHHHHHHHHHHHh--hcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCH
Confidence 44578999999999953211 111112333 5666 6543 22 357999999998888754221
Q ss_pred cccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhcCC
Q 001345 315 VPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQL 356 (1096)
Q Consensus 315 ~~~L~lFt~RFk~RlveMa~D~D~~V~v~AI~Ll~~L~~~~~ 356 (1096)
..+..+.++.-++|+++..-.|.+||+.|=+.+..|++.+.
T Consensus 220 -~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 220 -SKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred -HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 34667888888899999977799999999999999988764
No 81
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=35.33 E-value=3.4e+02 Score=32.41 Aligned_cols=131 Identities=28% Similarity=0.298 Sum_probs=95.3
Q ss_pred CChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcc----c------HHHHHH
Q 001345 254 IDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVP----T------LGLFTE 323 (1096)
Q Consensus 254 v~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~----~------L~lFt~ 323 (1096)
.+..-|.+|++.|..-....|+......=++.+--.+.|...+.-..++.++..+...|.... . +..||+
T Consensus 120 ~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd 199 (371)
T PF14664_consen 120 EDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTD 199 (371)
T ss_pred CchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhh
Confidence 677899999999999999999999988888999999999888888899999999998775432 1 223555
Q ss_pred HHHHHHhhhcccCc-hhHHHHHHHHHHHHHhc--CCC--CCC---ChhhHHhhhcCCChHHHHHHHHHHHHHH
Q 001345 324 RFSNRMIELADDID-VSVAVCAIGLVKQLLRH--QLL--PDD---DLGPLYDLLIDDPPEIRRAIGELVYDHL 388 (1096)
Q Consensus 324 RFk~RlveMa~D~D-~~V~v~AI~Ll~~L~~~--~~L--~~e---d~~~V~~Lvfd~~~~Vr~AAg~fv~~~l 388 (1096)
= -.+ ...+.. .+.-..+..++..+++. |++ ... -+..+...+.-.++.+|+++-+.+++-+
T Consensus 200 ~-~~~---~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dll 268 (371)
T PF14664_consen 200 F-HYR---KIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLL 268 (371)
T ss_pred h-hcc---ccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 2 111 122222 23445556666777775 765 333 3556666666788999999999988754
No 82
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=35.30 E-value=1.2e+02 Score=32.56 Aligned_cols=116 Identities=24% Similarity=0.306 Sum_probs=71.0
Q ss_pred HHHHHhhCccccccc--hhhhhhhhhcCCCChhHHHHHHHHHHhhhhcC--------CCcccHHHHHHHHHHHHhhh---
Q 001345 266 LGVWILSYPSFFLQD--LYLKYLGWTLNDKSASVRKSSVLALQNLYEVD--------DNVPTLGLFTERFSNRMIEL--- 332 (1096)
Q Consensus 266 LG~Wi~~yP~~FL~d--~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~--------~~~~~L~lFt~RFk~RlveM--- 332 (1096)
.|.|-..+|+..+.+ .----+--.+.|+++.||..++..|..|.+.. +...+-..||. |-.++-.|
T Consensus 23 ~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFts-lS~tLa~~i~~ 101 (182)
T PF13251_consen 23 FGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTS-LSSTLASMIME 101 (182)
T ss_pred HhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCccc-HHHHHHHHHHH
Confidence 366777777762221 11123345688999999999999999987431 11112233444 33333332
Q ss_pred --------c-ccCchhHHHHHHHHHHHHHhc---CCCCC----CChhhHHhhhcCCChHHHHHHHH
Q 001345 333 --------A-DDIDVSVAVCAIGLVKQLLRH---QLLPD----DDLGPLYDLLIDDPPEIRRAIGE 382 (1096)
Q Consensus 333 --------a-~D~D~~V~v~AI~Ll~~L~~~---~~L~~----ed~~~V~~Lvfd~~~~Vr~AAg~ 382 (1096)
. ...+..+-.+.++.+..+.++ .-|.. +-+..|..++.+.++.|+.++.-
T Consensus 102 lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~ 167 (182)
T PF13251_consen 102 LHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALS 167 (182)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 2 467777888888888888886 22332 23356677777888887776643
No 83
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=35.23 E-value=57 Score=43.29 Aligned_cols=69 Identities=16% Similarity=0.197 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhccCCCCccchhhhHHHHHHHhHhh---ccCCCcccc-cchHHHHHHHHhhcc
Q 001345 855 EDVSTIFLEALKRAYQRHAVEISRSDDKSLTEKSFVECKELSSRLS---GTYVGAARN-KHRSDILKTVKEGID 924 (1096)
Q Consensus 855 ~~~~~~l~~~L~~ly~~~~~~~~~~~~~~~~s~~f~~ikeLArRfa---ltf~G~d~~-k~R~ai~~lHk~GI~ 924 (1096)
+.--+.++.+.-|+|.-+..+...+......+..|-.+.-=.+||= ++| ...++ -.-++|-.=+|.||.
T Consensus 1525 ~adr~Rf~qat~qVFhaL~iekaeSsk~kekna~f~amI~k~~qffQaL~~f-AV~eLaiaAdaifePVRdGi~ 1597 (3015)
T KOG0943|consen 1525 IADRMRFLQATAQVFHALSIEKAESSKKKEKNAFFPAMIGKCKQFFQALLPF-AVEELAIAADAIFEPVRDGIA 1597 (3015)
T ss_pred HHHHHHHHHHHHHHHhheeeehhhhhhhhhcccccHHHHHHHHHHHHHhhhH-HHHHHHHHHhhhhhhhhhccc
Confidence 4556677888889997664444333333333456666766677773 344 33332 233566667888884
No 84
>cd06224 REM Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal domain (RasGef_N), also called REM domain (Ras exchanger motif). This domain is common in nucleotide exchange factors for Ras-like small GTPases and is typically found immediately N-terminal to the RasGef (Cdc25-like) domain. REM contacts the GTPase and is assumed to participate in the catalytic activity of the exchange factor. Proteins with the REM domain include Sos1 and Sos2, which relay signals from tyrosine-kinase mediated signalling to Ras, RasGRP1-4, RasGRF1,2, CNrasGEF, and RAP-specific nucleotide exchange factors, to name a few.
Probab=33.85 E-value=23 Score=34.29 Aligned_cols=26 Identities=31% Similarity=0.703 Sum_probs=22.1
Q ss_pred ChhHHHHHHHHHHHHHhhCccccccc
Q 001345 255 DPNIRMSCIQSLGVWILSYPSFFLQD 280 (1096)
Q Consensus 255 ~p~IR~~Ci~eLG~Wi~~yP~~FL~d 280 (1096)
...||.-++.-|..|+..||..|.+|
T Consensus 63 ~~~~~~~v~~~l~~Wv~~~~~df~~d 88 (122)
T cd06224 63 SKPIRLRVLNVLRTWVENYPYDFFDD 88 (122)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccccc
Confidence 34588889999999999999999644
No 85
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=32.83 E-value=3.8e+02 Score=31.70 Aligned_cols=99 Identities=14% Similarity=0.164 Sum_probs=74.4
Q ss_pred cCCChhHHHHHHHHHHHHHhhCcc--ccccchhhh-hhhhhcCCCChhHHHHHHHHHHhhhhcCCCc--ccHHHHHHHHH
Q 001345 252 RDIDPNIRMSCIQSLGVWILSYPS--FFLQDLYLK-YLGWTLNDKSASVRKSSVLALQNLYEVDDNV--PTLGLFTERFS 326 (1096)
Q Consensus 252 RDv~p~IR~~Ci~eLG~Wi~~yP~--~FL~d~YLK-YlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~--~~L~lFt~RFk 326 (1096)
--++++=|-.|+..|-.-+..+-. .|.+-.-+. -+| .|.++++.+|..+...|.....|.-.. .-++.+ |.
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~---~L 168 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLG-YLENSDAELRELAARVIGTAVQNNPKSQEQVIELG---AL 168 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcc---cH
Confidence 346777788888888877777643 455544443 445 799999999999999999999764221 113333 88
Q ss_pred HHHhhhc-ccCchhHHHHHHHHHHHHHhc
Q 001345 327 NRMIELA-DDIDVSVAVCAIGLVKQLLRH 354 (1096)
Q Consensus 327 ~RlveMa-~D~D~~V~v~AI~Ll~~L~~~ 354 (1096)
+-|+.+. .|.+.+|+..|.--+..+.++
T Consensus 169 ~~Ll~~ls~~~~~~~r~kaL~AissLIRn 197 (342)
T KOG2160|consen 169 SKLLKILSSDDPNTVRTKALFAISSLIRN 197 (342)
T ss_pred HHHHHHHccCCCchHHHHHHHHHHHHHhc
Confidence 8888888 799999999999999888887
No 86
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.21 E-value=1.5e+02 Score=38.40 Aligned_cols=51 Identities=31% Similarity=0.405 Sum_probs=43.8
Q ss_pred ccCchhHHHHHHHHHHHHHhc-C-------CCCCCChhhHHhhhcCCChHHHHHHHHHH
Q 001345 334 DDIDVSVAVCAIGLVKQLLRH-Q-------LLPDDDLGPLYDLLIDDPPEIRRAIGELV 384 (1096)
Q Consensus 334 ~D~D~~V~v~AI~Ll~~L~~~-~-------~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv 384 (1096)
--.|..||..||+|++.++++ | +-.|.-+-.+..++-|++.+||.+|--|+
T Consensus 132 e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL 190 (970)
T KOG0946|consen 132 EEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLL 190 (970)
T ss_pred HhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHH
Confidence 467999999999999999997 2 33677788999999999999999998664
No 87
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=31.88 E-value=1.9e+02 Score=33.57 Aligned_cols=86 Identities=14% Similarity=0.191 Sum_probs=64.6
Q ss_pred ChhHHHHHHHHHHHHHhhCcccccc--c----hhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCC--cccHHHHHHHHH
Q 001345 255 DPNIRMSCIQSLGVWILSYPSFFLQ--D----LYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDN--VPTLGLFTERFS 326 (1096)
Q Consensus 255 ~p~IR~~Ci~eLG~Wi~~yP~~FL~--d----~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~--~~~L~lFt~RFk 326 (1096)
.|++|.....-|..-+..+|..|++ + ..+..+-|++...+.+|-..||++|..+..+-.. .+....|.+.|-
T Consensus 133 yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~ 212 (319)
T PF08767_consen 133 YPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYY 212 (319)
T ss_dssp SHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 6999999999999888888888864 2 5678889999999999999999999999865322 344556766665
Q ss_pred HHHh----hhcccCchhH
Q 001345 327 NRMI----ELADDIDVSV 340 (1096)
Q Consensus 327 ~Rlv----eMa~D~D~~V 340 (1096)
-.++ .+..|.+...
T Consensus 213 ~~il~~if~vltD~~Hk~ 230 (319)
T PF08767_consen 213 LDILQDIFSVLTDSDHKS 230 (319)
T ss_dssp HHHHHHHHHHHHSTT-GG
T ss_pred HHHHHHHHHHHHCcccHH
Confidence 4444 3445777543
No 88
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.81 E-value=2.9e+02 Score=35.83 Aligned_cols=127 Identities=24% Similarity=0.303 Sum_probs=99.1
Q ss_pred ccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHh
Q 001345 251 YRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMI 330 (1096)
Q Consensus 251 yRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~Rlv 330 (1096)
-+|-.|-+|...-.+|-.--..-|+..= .-+-.++-+|+|+++.|=-+++-+-..+|- .++++--.-|| |+.
T Consensus 152 ~~D~s~yVRk~AA~AIpKLYsLd~e~k~--qL~e~I~~LLaD~splVvgsAv~AF~evCP-----erldLIHknyr-klC 223 (968)
T KOG1060|consen 152 VTDPSPYVRKTAAHAIPKLYSLDPEQKD--QLEEVIKKLLADRSPLVVGSAVMAFEEVCP-----ERLDLIHKNYR-KLC 223 (968)
T ss_pred hcCCcHHHHHHHHHhhHHHhcCChhhHH--HHHHHHHHHhcCCCCcchhHHHHHHHHhch-----hHHHHhhHHHH-HHH
Confidence 4789999999888877755444465543 678889999999999999999999999884 45666666666 888
Q ss_pred hhcccCchhHHHHHHHHHHHHHhcCCCCCC------------------------------Chh----hHHhhhcCCChHH
Q 001345 331 ELADDIDVSVAVCAIGLVKQLLRHQLLPDD------------------------------DLG----PLYDLLIDDPPEI 376 (1096)
Q Consensus 331 eMa~D~D~~V~v~AI~Ll~~L~~~~~L~~e------------------------------d~~----~V~~Lvfd~~~~V 376 (1096)
.+..|+|.==.+-.|+.|+.--++++.+|. |.+ ..-.|+|+.++.|
T Consensus 224 ~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sV 303 (968)
T KOG1060|consen 224 RLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSV 303 (968)
T ss_pred hhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHH
Confidence 888899988899999999999999887761 221 2336788888888
Q ss_pred HHHHHHHHH
Q 001345 377 RRAIGELVY 385 (1096)
Q Consensus 377 r~AAg~fv~ 385 (1096)
--|+++..|
T Consensus 304 VmA~aql~y 312 (968)
T KOG1060|consen 304 VMAVAQLFY 312 (968)
T ss_pred HHHHHhHHH
Confidence 888887765
No 89
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=31.73 E-value=1.5e+02 Score=28.78 Aligned_cols=86 Identities=23% Similarity=0.324 Sum_probs=64.3
Q ss_pred ccccchhh---hhhhhhcCC----CChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhc---ccCchhHHHHHH
Q 001345 276 FFLQDLYL---KYLGWTLND----KSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELA---DDIDVSVAVCAI 345 (1096)
Q Consensus 276 ~FL~d~YL---KYlGW~L~D----k~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlveMa---~D~D~~V~v~AI 345 (1096)
.||++.+| -+|.-.|+| +...-|..++++|..+.+ ..+..+..|++.|..+- .+.+ +++..|+
T Consensus 3 ~fL~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~------~~~~~i~~~~pQI~a~L~sal~~~-~l~~~al 75 (107)
T PF08064_consen 3 DFLQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIK------LGGSHISSARPQIMACLQSALEIP-ELREEAL 75 (107)
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHHHHhCCh-hhHHHHH
Confidence 46666554 556667888 777889999999999975 35567777888887766 3555 8999999
Q ss_pred HHHHHHHhcCCCCCCChhhHHhhhc
Q 001345 346 GLVKQLLRHQLLPDDDLGPLYDLLI 370 (1096)
Q Consensus 346 ~Ll~~L~~~~~L~~ed~~~V~~Lvf 370 (1096)
+....+.+. |+++|+.++...++
T Consensus 76 ~~W~~fi~~--L~~~~l~~ll~~~~ 98 (107)
T PF08064_consen 76 SCWNCFIKT--LDEEDLGPLLDQIF 98 (107)
T ss_pred HHHHHHHHH--CCHHHHHHHHHHHH
Confidence 999999887 46777776655443
No 90
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=31.13 E-value=95 Score=39.37 Aligned_cols=66 Identities=20% Similarity=0.245 Sum_probs=49.7
Q ss_pred hhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHH-HHHHHHHHHhhhc-ccCchhHHHHHHHHHHHHHh
Q 001345 283 LKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGL-FTERFSNRMIELA-DDIDVSVAVCAIGLVKQLLR 353 (1096)
Q Consensus 283 LKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~l-Ft~RFk~RlveMa-~D~D~~V~v~AI~Ll~~L~~ 353 (1096)
.--+---|+|.+|-+|-++|+.+.++|.-+...++=++ |+ |+|--+ .|...-||-.||+|+..|+-
T Consensus 348 v~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~ev~-----~lv~r~lqDrss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 348 VGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHEVI-----RLVGRRLQDRSSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHhCcccccchHHHHH-----HHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 34455668999999999999999999965543333332 33 344445 79999999999999988765
No 91
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.52 E-value=1.5e+02 Score=38.30 Aligned_cols=100 Identities=25% Similarity=0.343 Sum_probs=0.0
Q ss_pred cccC--CChhHHHHHHHHHH-HHHhhCccccccchhhh-------------hhhhhc-----------------------
Q 001345 250 RYRD--IDPNIRMSCIQSLG-VWILSYPSFFLQDLYLK-------------YLGWTL----------------------- 290 (1096)
Q Consensus 250 RyRD--v~p~IR~~Ci~eLG-~Wi~~yP~~FL~d~YLK-------------YlGW~L----------------------- 290 (1096)
++|+ .++.-|..||.-|- .-|.-||.+|=+=..|| |||-||
T Consensus 40 ~ire~~~d~~~r~rniaKLlYi~MLGypahFGqieclKLias~~f~dKRiGYLaamLlLdE~qdvllLltNslknDL~s~ 119 (866)
T KOG1062|consen 40 SIREPTNDPRKRHRNIAKLLYIHMLGYPAHFGQIECLKLIASDNFLDKRIGYLAAMLLLDERQDLLLLLTNSLKNDLNSS 119 (866)
T ss_pred HhcCCCCCHHHHHHHHHHHHHHHHhCCCccchhhHHHHHhcCCCchHHHHHHHHHHHHhccchHHHHHHHHHHHhhccCC
Q ss_pred --------------------------------CCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhcccCch
Q 001345 291 --------------------------------NDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDV 338 (1096)
Q Consensus 291 --------------------------------~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlveMa~D~D~ 338 (1096)
.-.++-||.+++..+.++..+. ...+++|...|+.+|-+ ++.
T Consensus 120 nq~vVglAL~alg~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~--P~l~e~f~~~~~~lL~e----k~h 193 (866)
T KOG1062|consen 120 NQYVVGLALCALGNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKV--PDLVEHFVIAFRKLLCE----KHH 193 (866)
T ss_pred CeeehHHHHHHhhccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC--chHHHHhhHHHHHHHhh----cCC
Q ss_pred hHHHHHHHHHHHHHhcC
Q 001345 339 SVAVCAIGLVKQLLRHQ 355 (1096)
Q Consensus 339 ~V~v~AI~Ll~~L~~~~ 355 (1096)
+|=..++.++..|.+.+
T Consensus 194 GVL~~~l~l~~e~c~~~ 210 (866)
T KOG1062|consen 194 GVLIAGLHLITELCKIS 210 (866)
T ss_pred ceeeeHHHHHHHHHhcC
No 92
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=29.94 E-value=53 Score=44.70 Aligned_cols=118 Identities=17% Similarity=0.136 Sum_probs=73.5
Q ss_pred hhHHHHHHHHHHHHHhhCccccc---cchhhhhhhhhcCCCChhHHHHHHHHHHhhhhc-CCCcccHHHHHHHHHHHHhh
Q 001345 256 PNIRMSCIQSLGVWILSYPSFFL---QDLYLKYLGWTLNDKSASVRKSSVLALQNLYEV-DDNVPTLGLFTERFSNRMIE 331 (1096)
Q Consensus 256 p~IR~~Ci~eLG~Wi~~yP~~FL---~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~-~~~~~~L~lFt~RFk~Rlve 331 (1096)
.+-|...+..+|.-...+-..+. ++.|..| -|-++|++.+||.+|++.....|-+ ++...... -+..
T Consensus 273 ~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~f-l~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~~~--------~~~~ 343 (1266)
T KOG1525|consen 273 EEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAF-LGRFNDISVEVRMECVESIKQCLLNNPSIAKAST--------ILLA 343 (1266)
T ss_pred HHHHHHHHHHHHHHHhcchhhhcccchHHHHHH-HHHhccCChhhhhhHHHHhHHHHhcCchhhhHHH--------HHHH
Confidence 35677778888866555555544 2344444 4569999999999999988888754 33322221 2223
Q ss_pred hc-ccCchhHHHHHHHHHHHHHhc---CCCCCCChhhHHhhhcCCChHHHHHHHH
Q 001345 332 LA-DDIDVSVAVCAIGLVKQLLRH---QLLPDDDLGPLYDLLIDDPPEIRRAIGE 382 (1096)
Q Consensus 332 Ma-~D~D~~V~v~AI~Ll~~L~~~---~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~ 382 (1096)
++ .|.|++||+..+-++...-.. -.+.+.-+..|.+..-|....||+.|-.
T Consensus 344 l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~ 398 (1266)
T KOG1525|consen 344 LRERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRDKKIKVRKQAMN 398 (1266)
T ss_pred HHhhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 33 577777776554433222221 1122224567788888999999999865
No 93
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=28.93 E-value=29 Score=44.79 Aligned_cols=92 Identities=25% Similarity=0.196 Sum_probs=71.0
Q ss_pred cCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhc----CCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHH
Q 001345 252 RDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTL----NDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSN 327 (1096)
Q Consensus 252 RDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L----~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~ 327 (1096)
||+.-.=|++ .-|.+|+ .|+.|.++.+|.-+.-.. -.--..+|++.++--..||+. ...+++.|...|..
T Consensus 56 RDivTK~rAL--qDLiq~n--D~sQF~NeqFLna~avlfprLsIev~~~~rl~~~qf~s~L~~~--l~KKi~k~lk~~i~ 129 (1525)
T COG5219 56 RDIVTKCRAL--QDLIQWN--DPSQFDNEQFLNALAVLFPRLSIEVEMNPRLEGLQFDSRLYEI--LSKKIGKRLKKTIL 129 (1525)
T ss_pred hhHHHHHHHH--HHHHhcc--CHhhhcHHHHHHHHHHHhhheeeeeeeccchhhhhhHHHHHHH--HHHHHHHHHHhhhh
Confidence 6666666765 8889998 899999999987544322 123457899999999999963 33478999999999
Q ss_pred HHhhhcccCchhHHHHHHHHHH
Q 001345 328 RMIELADDIDVSVAVCAIGLVK 349 (1096)
Q Consensus 328 RlveMa~D~D~~V~v~AI~Ll~ 349 (1096)
|++=-..|.|..|.+.|-.=+.
T Consensus 130 ~~llg~~d~d~sVsv~a~~~~~ 151 (1525)
T COG5219 130 RGLLGLKDVDDTVSVEANIDTL 151 (1525)
T ss_pred HHHHhhcchhhhcccccchHHH
Confidence 9998889999999998865333
No 94
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=28.64 E-value=3.1e+02 Score=39.73 Aligned_cols=130 Identities=19% Similarity=0.153 Sum_probs=96.9
Q ss_pred ChhHHHHHHHHHHHHHhhCcc---ccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhh
Q 001345 255 DPNIRMSCIQSLGVWILSYPS---FFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIE 331 (1096)
Q Consensus 255 ~p~IR~~Ci~eLG~Wi~~yP~---~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~Rlve 331 (1096)
.++|+......|..-....|+ ......=+--+-.+|+..+.+||.++-.+|..|+..-....+...-..---+-|++
T Consensus 622 s~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~ 701 (2102)
T PLN03200 622 KEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIK 701 (2102)
T ss_pred CHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHH
Confidence 456666666666655554444 45566677888889999999999999999999996432212222222223456999
Q ss_pred hcccCchhHHHHHHHHHHHHHhcC-----CCCCCChhhHHhhhcCCChHHHHHHHHHH
Q 001345 332 LADDIDVSVAVCAIGLVKQLLRHQ-----LLPDDDLGPLYDLLIDDPPEIRRAIGELV 384 (1096)
Q Consensus 332 Ma~D~D~~V~v~AI~Ll~~L~~~~-----~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv 384 (1096)
|..+.|.+|...|...|..|.+.+ +....-+..+.+++-+.++..|+-|+.-+
T Consensus 702 LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL 759 (2102)
T PLN03200 702 LAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARAL 759 (2102)
T ss_pred HHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHH
Confidence 999999999999999999999974 45566678889999999999998888654
No 95
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=28.27 E-value=51 Score=34.22 Aligned_cols=99 Identities=18% Similarity=0.204 Sum_probs=74.2
Q ss_pred cCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHH-HHHHHHHHh
Q 001345 252 RDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLF-TERFSNRMI 330 (1096)
Q Consensus 252 RDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lF-t~RFk~Rlv 330 (1096)
+-+-+++|....-.+..-+..+++.| .+...+|+.-.+.+...+....++.+|..||-.+-... =..| ++.|.+-|+
T Consensus 15 ~~~~~~~r~~a~v~l~k~l~~~~~~~-~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~-~~l~~~eg~~~~l~ 92 (157)
T PF11701_consen 15 LRQPEEVRSHALVILSKLLDAAREEF-KEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVG-SELFLSEGFLESLL 92 (157)
T ss_dssp TTTSCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHH-HHHCCTTTHHHHHH
T ss_pred cCCCHhHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHH-HHHHhhhhHHHHHH
Confidence 67788999988888888888888887 45567888888888888899999999999995431111 1223 567888899
Q ss_pred hhcc--cCchhHHHHHHHHHHHHH
Q 001345 331 ELAD--DIDVSVAVCAIGLVKQLL 352 (1096)
Q Consensus 331 eMa~--D~D~~V~v~AI~Ll~~L~ 352 (1096)
.|+. -.|..+...+++++..-.
T Consensus 93 ~~~~~~~~~~~~~~~~lell~aAc 116 (157)
T PF11701_consen 93 PLASRKSKDRKVQKAALELLSAAC 116 (157)
T ss_dssp HHHH-CTS-HHHHHHHHHHHHHHT
T ss_pred HHHhcccCCHHHHHHHHHHHHHHH
Confidence 8986 788888888888766543
No 96
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=27.96 E-value=1.1e+03 Score=28.20 Aligned_cols=112 Identities=15% Similarity=0.169 Sum_probs=72.7
Q ss_pred HHHHHHhhhceeEeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhc-CCCChhHHHHHHHHHHhhhhcCC
Q 001345 235 LEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTL-NDKSASVRKSSVLALQNLYEVDD 313 (1096)
Q Consensus 235 ie~~i~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L-~Dk~~~VR~~~L~aL~~Ly~~~~ 313 (1096)
..++++.+.+-...... +.+|..|.+.|+.-++++|..=.=+..|..+...+ +......|..++..+.=+-+ -
T Consensus 187 ~~~ll~~l~~~~~~~~~----~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~K--a 260 (415)
T PF12460_consen 187 LEELLQSLLNLALSSED----EFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITK--A 260 (415)
T ss_pred HHHHHHHHHHHHHcCCC----hHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHH--H
Confidence 44455555555544443 89999999999999999866433335566666556 67788888888877755543 1
Q ss_pred CcccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhc
Q 001345 314 NVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRH 354 (1096)
Q Consensus 314 ~~~~L~lFt~RFk~RlveMa~D~D~~V~v~AI~Ll~~L~~~ 354 (1096)
.+.+-......+-++++++..| .+++..|-+-+..|...
T Consensus 261 Lv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d 299 (415)
T PF12460_consen 261 LVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSD 299 (415)
T ss_pred HHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcC
Confidence 1122223444466678887766 66777777777777765
No 97
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=27.82 E-value=1.9e+02 Score=32.77 Aligned_cols=82 Identities=16% Similarity=0.211 Sum_probs=60.9
Q ss_pred hhhhhhcCCCChhHHHHHHHHHHhhhhc-C-C--CcccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 001345 284 KYLGWTLNDKSASVRKSSVLALQNLYEV-D-D--NVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPD 359 (1096)
Q Consensus 284 KYlGW~L~Dk~~~VR~~~L~aL~~Ly~~-~-~--~~~~L~lFt~RFk~RlveMa~D~D~~V~v~AI~Ll~~L~~~~~L~~ 359 (1096)
+-+|--|.+.++.+|.+++.-|..+.+. + + .......+++-|.+|+ .|......|++-+..|.+..-+++
T Consensus 2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl------~D~~~~~~~l~gl~~L~~~~~~~~ 75 (262)
T PF14500_consen 2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRL------DDHACVQPALKGLLALVKMKNFSP 75 (262)
T ss_pred cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHh------ccHhhHHHHHHHHHHHHhCcCCCh
Confidence 3478889999999999999999988754 2 1 1234566666666666 467777777888888888877787
Q ss_pred CChhhHHhhhcC
Q 001345 360 DDLGPLYDLLID 371 (1096)
Q Consensus 360 ed~~~V~~Lvfd 371 (1096)
+....+.+-+|+
T Consensus 76 ~~~~~i~~~l~~ 87 (262)
T PF14500_consen 76 ESAVKILRSLFQ 87 (262)
T ss_pred hhHHHHHHHHHH
Confidence 777777777774
No 98
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.51 E-value=1.1e+02 Score=39.15 Aligned_cols=62 Identities=27% Similarity=0.305 Sum_probs=49.1
Q ss_pred hhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhc
Q 001345 287 GWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRH 354 (1096)
Q Consensus 287 GW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlveMa~D~D~~V~v~AI~Ll~~L~~~ 354 (1096)
.-+|+-..+-||.+++..|.++|-. .-..|+.=+- |++|=..|.|++|...|+++++.|-+.
T Consensus 150 ~tLL~sskpYvRKkAIl~lykvFLk--YPeAlr~~Fp----rL~EkLeDpDp~V~SAAV~VICELArK 211 (877)
T KOG1059|consen 150 FTLLNSSKPYVRKKAILLLYKVFLK--YPEALRPCFP----RLVEKLEDPDPSVVSAAVSVICELARK 211 (877)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHh--hhHhHhhhHH----HHHHhccCCCchHHHHHHHHHHHHHhh
Confidence 3468889999999999999999853 1134444333 556666899999999999999999987
No 99
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=27.25 E-value=56 Score=40.94 Aligned_cols=116 Identities=20% Similarity=0.357 Sum_probs=68.8
Q ss_pred ChhHHHHHHHHHHHHHhhCccc------------cccchhhhhh----hhhcCCCChhHHHHHHHHHHhhhhcCCCcccH
Q 001345 255 DPNIRMSCIQSLGVWILSYPSF------------FLQDLYLKYL----GWTLNDKSASVRKSSVLALQNLYEVDDNVPTL 318 (1096)
Q Consensus 255 ~p~IR~~Ci~eLG~Wi~~yP~~------------FL~d~YLKYl----GW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L 318 (1096)
.|.+|..|+-.+|.=+..+=.. .+-..|.+|| +.+....+...+..+|++|.++= .+..++
T Consensus 448 ~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g-~~~~i~-- 524 (618)
T PF01347_consen 448 SPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLG-HPESIP-- 524 (618)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT--GGGHH--
T ss_pred ChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccC-CchhhH--
Confidence 3578888888888766655222 4444555554 45556778899999999999883 222222
Q ss_pred HHHHHHHHHHHhhhcc---cCchhHHHHHHHHHHHHHhcCCCCCCChhhH-Hhhhc--CCChHHHHHHHHHHH
Q 001345 319 GLFTERFSNRMIELAD---DIDVSVAVCAIGLVKQLLRHQLLPDDDLGPL-YDLLI--DDPPEIRRAIGELVY 385 (1096)
Q Consensus 319 ~lFt~RFk~RlveMa~---D~D~~V~v~AI~Ll~~L~~~~~L~~ed~~~V-~~Lvf--d~~~~Vr~AAg~fv~ 385 (1096)
.+...+. +....+|+.||.-+..+... .++.+..+ ++++. .+++.||-||.-.+.
T Consensus 525 ---------~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~---~~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm 585 (618)
T PF01347_consen 525 ---------VLLPYIEGKEEVPHFIRVAAIQALRRLAKH---CPEKVREILLPIFMNTTEDPEVRIAAYLILM 585 (618)
T ss_dssp ---------HHHTTSTTSS-S-HHHHHHHHHTTTTGGGT----HHHHHHHHHHHHH-TTS-HHHHHHHHHHHH
T ss_pred ---------HHHhHhhhccccchHHHHHHHHHHHHHhhc---CcHHHHHHHHHHhcCCCCChhHHHHHHHHHH
Confidence 3333442 56889999999977655333 33334333 34444 467889999976554
No 100
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=26.12 E-value=1.1e+02 Score=30.60 Aligned_cols=56 Identities=21% Similarity=0.321 Sum_probs=41.1
Q ss_pred ChhHHHHHHHHHHHHHhhCccc--cccc-hhhhhhhhhcCCCChhHHHHHHHHHHhhhh
Q 001345 255 DPNIRMSCIQSLGVWILSYPSF--FLQD-LYLKYLGWTLNDKSASVRKSSVLALQNLYE 310 (1096)
Q Consensus 255 ~p~IR~~Ci~eLG~Wi~~yP~~--FL~d-~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~ 310 (1096)
||..=++...-||..++.||.- ++++ .+=--+.-+++.++++||-+||+++++|-.
T Consensus 57 d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 57 DPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred CcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 7777788888888888888873 4432 233345567899999999999999999864
No 101
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=25.29 E-value=4.2e+02 Score=28.53 Aligned_cols=122 Identities=19% Similarity=0.181 Sum_probs=82.0
Q ss_pred HHHHHHHhhhceeEecc-----------ccCCChhHHHHHHHHHHHHHhhCccccccch---------------------
Q 001345 234 DLEDMMRKIFTGLFVHR-----------YRDIDPNIRMSCIQSLGVWILSYPSFFLQDL--------------------- 281 (1096)
Q Consensus 234 ~ie~~i~~iF~~VFvhR-----------yRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~--------------------- 281 (1096)
.+-.+|..+|=.....+ -+|-+|.+|+.-+..|..-+...-.+|....
T Consensus 21 ~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~ 100 (182)
T PF13251_consen 21 SLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIM 100 (182)
T ss_pred eeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Confidence 36777777776551111 3689999999999999987777544443322
Q ss_pred -hhhhhhhhcCC-CChhHHHHHHHHHHhhhhcCCCcccH-HHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhcCC
Q 001345 282 -YLKYLGWTLND-KSASVRKSSVLALQNLYEVDDNVPTL-GLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQL 356 (1096)
Q Consensus 282 -YLKYlGW~L~D-k~~~VR~~~L~aL~~Ly~~~~~~~~L-~lFt~RFk~RlveMa~D~D~~V~v~AI~Ll~~L~~~~~ 356 (1096)
--+.|.|.|.. +++.+=..++|.|.-|-.+-.. .+| ..+..++-..+-......|.+|++.+.-++..+....-
T Consensus 101 ~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY-~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 101 ELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPY-HRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHccCCh-hhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCC
Confidence 23567788865 4788888888888888765322 222 12444454555555555999999999999998887643
No 102
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=24.92 E-value=1.7e+02 Score=36.51 Aligned_cols=95 Identities=18% Similarity=0.196 Sum_probs=64.7
Q ss_pred CChhHHHHHHHHHHHHHhh--Ccccccc---------------chhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcc
Q 001345 254 IDPNIRMSCIQSLGVWILS--YPSFFLQ---------------DLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVP 316 (1096)
Q Consensus 254 v~p~IR~~Ci~eLG~Wi~~--yP~~FL~---------------d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~ 316 (1096)
-+|+-|---++.|+.+|.- ||..-+. ..|.+|+.--+-=.++-||.+++.+|.+.--+.+.
T Consensus 443 ~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d-- 520 (898)
T COG5240 443 NDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISD-- 520 (898)
T ss_pred hCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccc--
Confidence 4677777778888888753 4554332 46888888777778999999999999887322211
Q ss_pred cHHHHHHHHHHHHhhhc-ccCchhHHHHHHHHHHHHHh
Q 001345 317 TLGLFTERFSNRMIELA-DDIDVSVAVCAIGLVKQLLR 353 (1096)
Q Consensus 317 ~L~lFt~RFk~RlveMa-~D~D~~V~v~AI~Ll~~L~~ 353 (1096)
.|..+=-..++--| .|.|.+||-.|-=++..|..
T Consensus 521 ---~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~ 555 (898)
T COG5240 521 ---VVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRL 555 (898)
T ss_pred ---cccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhh
Confidence 11122222333334 79999999999888887774
No 103
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=24.62 E-value=2.3e+02 Score=37.24 Aligned_cols=158 Identities=18% Similarity=0.247 Sum_probs=92.9
Q ss_pred ccHHHHHHHHHHHHHhHHHHHHHHHhhhceeEeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCC--
Q 001345 216 PRVESLNKRLSMTHKNITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDK-- 293 (1096)
Q Consensus 216 ~r~e~l~~~~~e~~~~~e~ie~~i~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk-- 293 (1096)
.|.|+|+.=+..+++...++..-...+....--+|..|+.-.+=+.-...|+.--...+.-|.. |-+-++=.|.|+
T Consensus 269 ~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~--~~~~v~p~lld~lk 346 (815)
T KOG1820|consen 269 DRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK--YAKNVFPSLLDRLK 346 (815)
T ss_pred HHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH--HHHhhcchHHHHhh
Confidence 4666665555555554423333333444455677888887766555444444444555555544 555555555554
Q ss_pred --ChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhc-C--CCCCCChhhHH--
Q 001345 294 --SASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRH-Q--LLPDDDLGPLY-- 366 (1096)
Q Consensus 294 --~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlveMa~D~D~~V~v~AI~Ll~~L~~~-~--~L~~ed~~~V~-- 366 (1096)
.+.+|-+.++++....+ ...+. +.-+-|+++..++.+.++.+.-.++...++. + ..+.+.++.+.
T Consensus 347 ekk~~l~d~l~~~~d~~~n----s~~l~----~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~ 418 (815)
T KOG1820|consen 347 EKKSELRDALLKALDAILN----STPLS----KMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPH 418 (815)
T ss_pred hccHHHHHHHHHHHHHHHh----cccHH----HHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHH
Confidence 45555555554444443 11111 1223567778999999999988888887775 3 23344455444
Q ss_pred --hhhcCCChHHHHHHHHH
Q 001345 367 --DLLIDDPPEIRRAIGEL 383 (1096)
Q Consensus 367 --~Lvfd~~~~Vr~AAg~f 383 (1096)
..+=|....||.||-+-
T Consensus 419 ~~~~~~D~~~~VR~Aa~e~ 437 (815)
T KOG1820|consen 419 LIKHINDTDKDVRKAALEA 437 (815)
T ss_pred HhhhccCCcHHHHHHHHHH
Confidence 44459999999999775
No 104
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=24.33 E-value=3.3e+02 Score=25.33 Aligned_cols=51 Identities=10% Similarity=0.290 Sum_probs=36.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHcccCC----CccHHHHHHHHHHHHHhHHHHHHHHH
Q 001345 190 VAKMLGAQRETTQRQLNAEKKKRVE----GPRVESLNKRLSMTHKNITDLEDMMR 240 (1096)
Q Consensus 190 va~~l~~~~~~~qrQleaEk~K~~~----~~r~e~l~~~~~e~~~~~e~ie~~i~ 240 (1096)
-.+.+....+..|.|++.-+.+-.. ++|++++..++..++.+...|.++++
T Consensus 12 dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~iL~ 66 (75)
T PF05531_consen 12 DIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQDILN 66 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3456778888889998766554332 35677777777777777777777776
No 105
>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions. These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.
Probab=23.82 E-value=35 Score=21.31 Aligned_cols=10 Identities=70% Similarity=1.301 Sum_probs=3.3
Q ss_pred cccCCCCCCc
Q 001345 1006 RRRGRPRKKR 1015 (1096)
Q Consensus 1006 ~~r~~~~~~~ 1015 (1096)
|.||||+|..
T Consensus 2 r~RGRP~k~~ 11 (13)
T PF02178_consen 2 RKRGRPRKNA 11 (13)
T ss_dssp --SS--TT--
T ss_pred CcCCCCcccc
Confidence 6788888753
No 106
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=23.70 E-value=3.6e+02 Score=31.19 Aligned_cols=79 Identities=20% Similarity=0.169 Sum_probs=47.2
Q ss_pred hhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhc-c---cCchhHHHHHHHHHHHH-HhcCCC
Q 001345 283 LKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELA-D---DIDVSVAVCAIGLVKQL-LRHQLL 357 (1096)
Q Consensus 283 LKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlveMa-~---D~D~~V~v~AI~Ll~~L-~~~~~L 357 (1096)
|+..-=.|.||++..|..+|.+|..++... -+..|+...+.-|+..+ . =-..+-+..|.+++..+ +..|
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~----~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg-- 118 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSR----YLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLG-- 118 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhc----ccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcC--
Confidence 444444579999999999999999999754 23456666666666655 1 11113445566655555 2324
Q ss_pred CCCChhhHHh
Q 001345 358 PDDDLGPLYD 367 (1096)
Q Consensus 358 ~~ed~~~V~~ 367 (1096)
..++.+.||.
T Consensus 119 ~g~~~~ei~~ 128 (309)
T PF05004_consen 119 AGEDSEEIFE 128 (309)
T ss_pred CCccHHHHHH
Confidence 2344444443
No 107
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=22.92 E-value=3.6e+02 Score=25.72 Aligned_cols=74 Identities=18% Similarity=0.175 Sum_probs=57.0
Q ss_pred cCCChhHHHHHHHHHHHHHhhCc-cccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHH
Q 001345 252 RDIDPNIRMSCIQSLGVWILSYP-SFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFS 326 (1096)
Q Consensus 252 RDv~p~IR~~Ci~eLG~Wi~~yP-~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk 326 (1096)
.|-.|=||+-.+..|...|.... ..=--+.-|.-+--.|.|.++=|=+.|+++|..|-..... ..+..+.+.|.
T Consensus 13 ~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~-~vl~~L~~~y~ 87 (92)
T PF10363_consen 13 NDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD-EVLPILLDEYA 87 (92)
T ss_pred cCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH-HHHHHHHHHHh
Confidence 57778899999999999999998 4444567778888899999999999999999998643211 23444555443
No 108
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=22.74 E-value=2.4e+02 Score=36.70 Aligned_cols=57 Identities=18% Similarity=0.248 Sum_probs=29.9
Q ss_pred ChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhc
Q 001345 294 SASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRH 354 (1096)
Q Consensus 294 ~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlveMa~D~D~~V~v~AI~Ll~~L~~~ 354 (1096)
+--+|..++.++..|-+ +-+-+.|++-|-+=+..|+.|..++||..+.+.+..+.+.
T Consensus 570 ~y~~R~t~l~si~~la~----v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~ 626 (759)
T KOG0211|consen 570 NYLVRMTTLFSIHELAE----VLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKL 626 (759)
T ss_pred ccchhhHHHHHHHHHHH----HhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhh
Confidence 45555555555553321 1122335555555566666666666666666655555543
No 109
>smart00384 AT_hook DNA binding domain with preference for A/T rich regions. Small DNA-binding motif first described in the high mobility group non-histone chromosomal protein HMG-I(Y).
Probab=22.71 E-value=51 Score=24.38 Aligned_cols=14 Identities=50% Similarity=0.817 Sum_probs=10.7
Q ss_pred cccCCCCCCccccC
Q 001345 1006 RRRGRPRKKRNIEG 1019 (1096)
Q Consensus 1006 ~~r~~~~~~~~~~~ 1019 (1096)
|.||||||......
T Consensus 2 RkRGRPrK~~~~~~ 15 (26)
T smart00384 2 RKRGRPRKAPKDXX 15 (26)
T ss_pred CCCCCCCCCCCccc
Confidence 78899998876544
No 110
>PRK13280 N-glycosylase/DNA lyase; Provisional
Probab=22.29 E-value=5.5e+02 Score=29.42 Aligned_cols=148 Identities=16% Similarity=0.181 Sum_probs=71.4
Q ss_pred CccchhHHHhhhhhcchhhhhc--cccchHHHHHHHHHHHHHHhcCcHH--HHHHHHHHHHH-HhhcchhhHHHHHHhhH
Q 001345 530 DKAKVPSLIDIVMHMKLELYSL--KRDEKSFETILQLVNDAFFKHGEKE--ALRSCVKAIKF-CSAESQGELQDSARKNL 604 (1096)
Q Consensus 530 d~ekv~~LL~ip~~~dLe~Y~~--~r~e~~l~~LL~~i~~~f~kHsd~~--VL~~~a~al~~-L~~~~~~~l~~~a~~~l 604 (1096)
|.+++..|.++...+.++.... -+.+.+|.+ ++++...|.... +|-.+..-.+| |+..+......+++---
T Consensus 3 ~~~r~~~l~eil~~l~i~~~~~iee~~DpQy~a----v~~L~~~~g~~~~~~Lvi~NaLvSYqLsgkGEe~W~eFs~yf~ 78 (269)
T PRK13280 3 NEERVRELGEILRELGIEGALEIEERVDPQYKA----VENLVESLGEDLFAKLVIANALVSYQLSGKGEEWWWEFSKYFS 78 (269)
T ss_pred cHHHHHHHHHHHHhcCHHHHHHHHhccCHHHHH----HHHHHHHcCccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhc
Confidence 4556666666666666544321 122334443 455555666431 12211111122 55554433333333211
Q ss_pred HHHHHHHHHHHHHHHHHhccCCchhHHH-HHHHHHHHHhc-CCCC----------CcchHHHHHHHHHhhcCCCCHHHHH
Q 001345 605 KDVEDKLIAKLKSAIKAVLDGDDEYSLL-VNLKRLYELQL-SKAV----------PIESLYEDLVMILHTFRNLDNEVVS 672 (1096)
Q Consensus 605 ~~L~d~lv~~l~~~~~~~~~~~~~~~ll-~~L~Rl~~l~~-~~~l----------~~~~l~~~l~~ll~~~~~l~~e~v~ 672 (1096)
..-.+++++.|..++.... .--+++ .-++||..+.. -.++ .-..+++.|.++|. .+-+...|.
T Consensus 79 ~~~~~~~~~~~~~Fl~~s~---~nrrl~e~KikRi~r~~~fl~~L~l~~~~~~y~~l~~l~~~La~~L~--s~~~~KTiV 153 (269)
T PRK13280 79 EKGVEDIVEAYIEFLKNSK---GNRRLLEQKIKRIEKVEPFLESLTLLDLPLYYEDLEELLEQLAKILG--AKKESKTVV 153 (269)
T ss_pred ccCchhHHHHHHHHHhcCc---hhHHHHHHHHHHHHHHHHHhhhhccchhhhhHhhHHHHHHHHHHHhC--CCCCcceee
Confidence 1233666666666553221 111222 33788877731 1112 11234444444443 344567899
Q ss_pred HHHHHHHHHHhhcc
Q 001345 673 FLLLNLYLYLAWSL 686 (1096)
Q Consensus 673 ~al~~~~~~l~W~l 686 (1096)
+|+++.+|...=..
T Consensus 154 FAvKM~~Ya~r~~~ 167 (269)
T PRK13280 154 FAVKMFGYACRAAF 167 (269)
T ss_pred eHHHHHHHHHHHhc
Confidence 99999999887543
No 111
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=22.08 E-value=4.5e+02 Score=31.15 Aligned_cols=97 Identities=14% Similarity=0.092 Sum_probs=58.3
Q ss_pred hhhhhhhcCCCChhHHHHHHHHHHhhh---hc-------------CCCcccHHHHHHHHHHHHhhhcccCchh-HHHHHH
Q 001345 283 LKYLGWTLNDKSASVRKSSVLALQNLY---EV-------------DDNVPTLGLFTERFSNRMIELADDIDVS-VAVCAI 345 (1096)
Q Consensus 283 LKYlGW~L~Dk~~~VR~~~L~aL~~Ly---~~-------------~~~~~~L~lFt~RFk~RlveMa~D~D~~-V~v~AI 345 (1096)
+..+-..+-+....+|.+|+.-+..+- .. ....+. .|.+-|.+||.+|..+++.. .+...=
T Consensus 177 ~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~--~~~~~~~~~L~~mi~~~~~~~~a~~iW 254 (372)
T PF12231_consen 177 FPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENG--KLIQLYCERLKEMIKSKDEYKLAMQIW 254 (372)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccc--cHHHHHHHHHHHHHhCcCCcchHHHHH
Confidence 345566666778888887766554442 10 111122 57778999999999885444 455566
Q ss_pred HHHHHHHhcCCCCCCC-h---hhHHhhhc-CCChHHHHHHH
Q 001345 346 GLVKQLLRHQLLPDDD-L---GPLYDLLI-DDPPEIRRAIG 381 (1096)
Q Consensus 346 ~Ll~~L~~~~~L~~ed-~---~~V~~Lvf-d~~~~Vr~AAg 381 (1096)
.+++.|+....++.-+ . -.|.+.-| +.++.+|.+|=
T Consensus 255 ~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~ 295 (372)
T PF12231_consen 255 SVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAF 295 (372)
T ss_pred HHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHH
Confidence 6777777654333322 2 24556666 56777776663
No 112
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=21.74 E-value=2.6e+02 Score=32.87 Aligned_cols=80 Identities=13% Similarity=0.171 Sum_probs=63.6
Q ss_pred CChhHHHHHHHHHHHHHhhCcc-----ccc-cchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHH
Q 001345 254 IDPNIRMSCIQSLGVWILSYPS-----FFL-QDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSN 327 (1096)
Q Consensus 254 v~p~IR~~Ci~eLG~Wi~~yP~-----~FL-~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~ 327 (1096)
-.--.|.-.+.=||.-+...+. .|+ ++.+||.+-.+|.|++..+|.++.....---.||...+.+..+.-+=|+
T Consensus 221 ~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~ 300 (335)
T PF08569_consen 221 SNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNRE 300 (335)
T ss_dssp SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHH
T ss_pred CCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Confidence 3445788889999988866654 233 7899999999999999999999998888777899888889999999999
Q ss_pred HHhhhc
Q 001345 328 RMIELA 333 (1096)
Q Consensus 328 RlveMa 333 (1096)
+|+...
T Consensus 301 kLl~fl 306 (335)
T PF08569_consen 301 KLLRFL 306 (335)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999988
No 113
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=21.52 E-value=4.1e+02 Score=34.75 Aligned_cols=132 Identities=21% Similarity=0.213 Sum_probs=99.8
Q ss_pred ccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHH
Q 001345 249 HRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNR 328 (1096)
Q Consensus 249 hRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~R 328 (1096)
+=..|+.|..|...-+-+|.-....|.....+.++--+-=++.|..-.||+.++.++..+.+.=+--. .-...|-+-
T Consensus 244 ~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~---d~~~~~~~~ 320 (759)
T KOG0211|consen 244 SLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD---DVVKSLTES 320 (759)
T ss_pred hhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch---hhhhhhhHH
Confidence 34679999999999999999999999999999999999999999999999999998887754211110 223334557
Q ss_pred HhhhcccCchhHHHHHHHHHHHHHhc-C--CCCCCChhhHHhhhcCCChHHHHHHHHH
Q 001345 329 MIELADDIDVSVAVCAIGLVKQLLRH-Q--LLPDDDLGPLYDLLIDDPPEIRRAIGEL 383 (1096)
Q Consensus 329 lveMa~D~D~~V~v~AI~Ll~~L~~~-~--~L~~ed~~~V~~Lvfd~~~~Vr~AAg~f 383 (1096)
+++...|.+..|+-........+... | ....+-..++..++=|..-.+|.|+|.=
T Consensus 321 l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~ 378 (759)
T KOG0211|consen 321 LVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKK 378 (759)
T ss_pred HHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcc
Confidence 78888999999999998888888775 2 2233334455556667777777777754
No 114
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=21.43 E-value=5.6e+02 Score=28.93 Aligned_cols=119 Identities=11% Similarity=0.143 Sum_probs=81.4
Q ss_pred hHHHHHHHHHhhhceeEeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhh
Q 001345 231 NITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYE 310 (1096)
Q Consensus 231 ~~e~ie~~i~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~ 310 (1096)
++..|+.++..+-+.++. ...+.+.....+..|+.--.+...+.+=..|+.+|--+|+-.+..+|..+|+.|..|-.
T Consensus 87 n~~~Ik~~i~~Vc~~~~s---~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 87 NQEQIKMYIPQVCEETVS---SPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred hHHHHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 444456666666665555 24677777788888886544433333335689999999999999999999999999998
Q ss_pred cCCCcccHHHHHHHHHHHHhhhc-ccCchhHHHHHHHHHHHHHhc
Q 001345 311 VDDNVPTLGLFTERFSNRMIELA-DDIDVSVAVCAIGLVKQLLRH 354 (1096)
Q Consensus 311 ~~~~~~~L~lFt~RFk~RlveMa-~D~D~~V~v~AI~Ll~~L~~~ 354 (1096)
++++...| +...=-..++.+- .+.+.++-..++-+...|.++
T Consensus 164 np~~~~~L--l~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 164 NPDMTREL--LSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred CHHHHHHH--HhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 88664332 2222223445455 355678888899888888775
No 115
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=20.78 E-value=7.7e+02 Score=29.20 Aligned_cols=135 Identities=19% Similarity=0.207 Sum_probs=91.8
Q ss_pred ccCCChhHHHHHHHHHHHHHhhCccc---cccchhhhhhhhhc-CCCChhHHHHHHHHHHhhhhcCCCcccHHHHHH--H
Q 001345 251 YRDIDPNIRMSCIQSLGVWILSYPSF---FLQDLYLKYLGWTL-NDKSASVRKSSVLALQNLYEVDDNVPTLGLFTE--R 324 (1096)
Q Consensus 251 yRDv~p~IR~~Ci~eLG~Wi~~yP~~---FL~d~YLKYlGW~L-~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~--R 324 (1096)
--+.++.+|.....-||.-..+.|.. +++...|+-|--.| +|..-+||.++|-|+..|.++. .+....|.. -
T Consensus 133 l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~--~~g~~~fl~~~G 210 (342)
T KOG2160|consen 133 LENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNN--KPGQDEFLKLNG 210 (342)
T ss_pred hcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcC--cHHHHHHHhcCC
Confidence 35789999999999999999999974 66777776655544 6788899999999999999864 344444422 1
Q ss_pred HHHHHhhhcc--cCchhHHHHHHHHHHHHHhcCCCCCCCh------hhHHhhhcCCChHHHHHHHHHHHHHH
Q 001345 325 FSNRMIELAD--DIDVSVAVCAIGLVKQLLRHQLLPDDDL------GPLYDLLIDDPPEIRRAIGELVYDHL 388 (1096)
Q Consensus 325 Fk~RlveMa~--D~D~~V~v~AI~Ll~~L~~~~~L~~ed~------~~V~~Lvfd~~~~Vr~AAg~fv~~~l 388 (1096)
+. -|...-. +.+....+.|+-|+..|.+...-..++. ..+-.++..-+-.++.+|-..+...+
T Consensus 211 ~~-~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 211 YQ-VLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred HH-HHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 11 2333333 4788889999999999998743222211 12334555666666677766655443
No 116
>PHA03386 P10 fibrous body protein; Provisional
Probab=20.46 E-value=3.8e+02 Score=25.81 Aligned_cols=49 Identities=14% Similarity=0.336 Sum_probs=38.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHcccCCCccHHHHHHHHHHHHHhHHHHHHHHH
Q 001345 189 SVAKMLGAQRETTQRQLNAEKKKRVEGPRVESLNKRLSMTHKNITDLEDMMR 240 (1096)
Q Consensus 189 ~va~~l~~~~~~~qrQleaEk~K~~~~~r~e~l~~~~~e~~~~~e~ie~~i~ 240 (1096)
.-++.+....+..|.|++.-+.+ ...++.+-.++.++..+.+.|.++++
T Consensus 12 ~dIkavd~KVdaLQ~qV~dv~~n---~~~LDa~~~qL~~l~tkV~~Iq~iLn 60 (94)
T PHA03386 12 DAVQEVDTKVDALQTQLNGLEED---SQPLDGLPAQLTELDTKVSDIQSILT 60 (94)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhc---chhhhhHHHHHHHHHHHHHHHHHhcC
Confidence 34456788888899999665543 34588899999999999999998876
No 117
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=20.28 E-value=2e+03 Score=28.46 Aligned_cols=154 Identities=14% Similarity=0.130 Sum_probs=73.1
Q ss_pred HHHHhHHHHHHHhcCccchhHHHhhhhhcchhhhh-cccc--chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcc
Q 001345 516 MMKNYPRLLRKFMADKAKVPSLIDIVMHMKLELYS-LKRD--EKSFETILQLVNDAFFKHGEKEALRSCVKAIKFCSAES 592 (1096)
Q Consensus 516 li~~LP~LL~Ky~ad~ekv~~LL~ip~~~dLe~Y~-~~r~--e~~l~~LL~~i~~~f~kHsd~~VL~~~a~al~~L~~~~ 592 (1096)
+-..+-.+|+|-+. +||..|.+-+. ++|- ..|+ +..+..++.++....++--|.-+...+|-+ +.|+..-
T Consensus 319 l~rkv~g~LNKLSd-----aNi~~I~~~i~-~Ly~~~sr~~v~~sLtk~l~~~~~~~~~~ld~~~~~y~AL~-~~l~~~v 391 (822)
T KOG2141|consen 319 LRRKVNGSLNKLSD-----ANIIKIIAGIA-ELYMNNSRYDVTSSLTKLLLKALLGPFRLLDSLLTTYAALA-AMLHTMV 391 (822)
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHH-HHHHhcchhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-HHHHHHH
Confidence 34455666666542 33333333221 2332 1122 245666666666665555554444444433 2232221
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhhcCCCCHHHHH
Q 001345 593 QGELQDSARKNLKDVEDKLIAKLKSAIKAVLDGDDEYSLLVNLKRLYELQLSKAVPIESLYEDLVMILHTFRNLDNEVVS 672 (1096)
Q Consensus 593 ~~~l~~~a~~~l~~L~d~lv~~l~~~~~~~~~~~~~~~ll~~L~Rl~~l~~~~~l~~~~l~~~l~~ll~~~~~l~~e~v~ 672 (1096)
. .++.-..++.+++..+..|+........+-.-.++..- ++.+++.+=++..=+|+.+-.++.......-|++.
T Consensus 392 g---~eigahf~q~~ve~f~~~~~~~~~~~~~~K~~~Nl~~~---l~ylynF~ivs~~LiydiI~kl~~~l~e~~ve~ll 465 (822)
T KOG2141|consen 392 G---NEIGAHFLQTFVEDFLKSYKEEEEMDLKDKSLNNIVLF---LSYLYNFGIVSCSLIYDIIRKLAENLNETNVEALL 465 (822)
T ss_pred h---hHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHH---HHHHHHhhcccHHHHHHHHHHHHhchhhhhHHHHH
Confidence 1 23333444444554444444433222222122233222 34444444444445677666666555566678888
Q ss_pred HHHHHHHHHH
Q 001345 673 FLLLNLYLYL 682 (1096)
Q Consensus 673 ~al~~~~~~l 682 (1096)
..+.+|++.|
T Consensus 466 ~ii~~~G~~L 475 (822)
T KOG2141|consen 466 TIIANCGFSL 475 (822)
T ss_pred HHHHHccchh
Confidence 8888887754
Done!