Query 001345
Match_columns 1096
No_of_seqs 218 out of 304
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 23:21:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001345.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001345hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ltm_A Alpha-REP4; protein eng 96.6 0.0099 3.4E-07 61.0 11.3 110 252-386 60-169 (211)
2 3ltj_A Alpharep-4; protein eng 96.5 0.017 5.8E-07 58.7 11.9 110 252-386 55-164 (201)
3 3ltj_A Alpharep-4; protein eng 96.4 0.016 5.6E-07 58.9 11.2 110 251-385 85-194 (201)
4 1b3u_A Protein (protein phosph 96.4 0.011 3.9E-07 69.3 11.2 130 252-385 412-544 (588)
5 3ltm_A Alpha-REP4; protein eng 96.3 0.015 5.1E-07 59.7 10.4 110 252-386 29-138 (211)
6 4fdd_A Transportin-1; heat rep 96.3 1.3 4.3E-05 55.3 29.9 103 250-354 182-286 (852)
7 1oyz_A Hypothetical protein YI 96.3 0.02 7E-07 61.3 11.6 117 252-385 101-217 (280)
8 1b3u_A Protein (protein phosph 96.3 0.0063 2.2E-07 71.5 8.1 131 252-386 174-307 (588)
9 2qk2_A LP04448P; mini spindles 95.9 0.043 1.5E-06 57.9 11.9 134 249-386 22-159 (242)
10 4db6_A Armadillo repeat protei 95.9 0.031 1.1E-06 56.9 10.4 131 253-385 65-205 (210)
11 4hxt_A De novo protein OR329; 95.7 0.022 7.4E-07 59.1 8.5 132 253-386 55-196 (252)
12 2qk2_A LP04448P; mini spindles 95.5 0.056 1.9E-06 57.0 10.8 103 248-354 104-206 (242)
13 4hxt_A De novo protein OR329; 95.3 0.064 2.2E-06 55.5 10.3 133 252-386 12-154 (252)
14 4db6_A Armadillo repeat protei 95.2 0.062 2.1E-06 54.6 9.8 134 251-386 21-164 (210)
15 1oyz_A Hypothetical protein YI 95.2 0.062 2.1E-06 57.5 10.2 120 252-385 64-184 (280)
16 4db8_A Armadillo-repeat protei 95.1 0.15 5E-06 53.3 12.5 134 252-386 64-206 (252)
17 4db8_A Armadillo-repeat protei 95.1 0.045 1.5E-06 57.3 8.2 131 253-385 107-247 (252)
18 1te4_A Conserved protein MTH18 94.9 0.0073 2.5E-07 58.0 1.4 112 246-383 16-127 (131)
19 3gs3_A Symplekin, LD45768P; he 94.8 0.27 9.3E-06 53.5 13.7 130 216-353 31-173 (257)
20 3b2a_A TON_1937, putative unch 94.2 0.15 5.2E-06 54.7 9.7 104 279-384 31-139 (265)
21 2vgl_B AP-2 complex subunit be 94.0 0.26 8.9E-06 59.3 12.5 96 247-355 91-191 (591)
22 1te4_A Conserved protein MTH18 93.9 0.0061 2.1E-07 58.5 -1.5 99 270-386 1-99 (131)
23 2of3_A ZYG-9; multifunctional 93.6 1.8 6.3E-05 47.2 17.1 56 254-311 179-237 (266)
24 4fdd_A Transportin-1; heat rep 93.1 0.21 7.3E-06 62.3 10.1 142 237-385 215-384 (852)
25 2vgl_B AP-2 complex subunit be 92.9 0.2 6.8E-06 60.3 9.0 131 252-386 131-265 (591)
26 2jdq_A Importin alpha-1 subuni 92.9 0.38 1.3E-05 54.3 10.9 133 252-386 244-387 (450)
27 4ffb_C Protein STU2; tubulin f 92.9 0.41 1.4E-05 51.6 10.7 100 251-354 112-213 (278)
28 1u6g_C TIP120 protein, CAND1; 92.8 0.37 1.3E-05 62.7 11.9 148 236-385 429-594 (1230)
29 2jdq_A Importin alpha-1 subuni 92.6 0.39 1.3E-05 54.2 10.4 133 252-385 117-259 (450)
30 3o2t_A Symplekin; heat repeat, 92.4 0.74 2.5E-05 52.9 12.3 129 216-352 41-182 (386)
31 1ibr_B P95, importin beta-1 su 92.3 1.1 3.9E-05 50.4 13.8 130 255-386 143-285 (462)
32 1wa5_B Importin alpha subunit; 92.2 0.58 2E-05 54.9 11.6 130 255-385 186-324 (530)
33 2db0_A 253AA long hypothetical 91.8 0.62 2.1E-05 48.4 9.5 111 231-354 101-211 (253)
34 2qk1_A Protein STU2; STU2P, XM 91.6 0.77 2.6E-05 49.2 10.7 107 248-354 110-221 (249)
35 1wa5_B Importin alpha subunit; 91.5 0.31 1.1E-05 57.2 8.1 139 248-386 347-507 (530)
36 2qk1_A Protein STU2; STU2P, XM 91.2 0.76 2.6E-05 49.3 10.1 139 247-387 21-173 (249)
37 1ibr_B P95, importin beta-1 su 91.0 0.99 3.4E-05 50.9 11.5 133 251-385 226-391 (462)
38 1xqr_A HSPBP1 protein; armadil 90.2 0.92 3.1E-05 50.1 9.9 133 252-386 92-235 (296)
39 4ffb_C Protein STU2; tubulin f 89.9 2.9 0.0001 44.9 13.5 139 250-388 17-167 (278)
40 4b8j_A Importin subunit alpha- 89.5 1.1 3.7E-05 52.4 10.4 133 252-386 170-312 (528)
41 3tjz_B Coatomer subunit gamma; 89.2 1 3.5E-05 51.2 9.5 95 251-355 113-207 (355)
42 2bpt_A Importin beta-1 subunit 89.1 48 0.0016 40.4 42.1 101 252-354 189-296 (861)
43 2bpt_A Importin beta-1 subunit 88.3 3.7 0.00013 50.4 14.5 129 255-385 344-478 (861)
44 4b8j_A Importin subunit alpha- 88.0 1.6 5.6E-05 50.9 10.5 133 252-386 213-355 (528)
45 1qgr_A Protein (importin beta 87.8 3.4 0.00012 50.8 13.7 131 253-385 339-475 (876)
46 1qgr_A Protein (importin beta 87.6 2 6.9E-05 52.9 11.5 132 252-385 227-391 (876)
47 1lrv_A LRV, leucine-rich repea 86.9 0.56 1.9E-05 50.6 5.1 90 249-384 129-218 (244)
48 1w63_A Adapter-related protein 85.5 0.73 2.5E-05 55.8 5.8 92 252-354 117-209 (618)
49 1xqr_A HSPBP1 protein; armadil 84.0 2.5 8.5E-05 46.6 8.8 100 253-354 136-239 (296)
50 2vgl_A Adaptor protein complex 83.6 1.4 4.6E-05 53.6 7.0 95 252-355 121-218 (621)
51 3tpo_A Importin subunit alpha- 83.2 4.2 0.00014 47.8 10.9 136 251-387 302-447 (529)
52 3ul1_B Importin subunit alpha- 83.0 3.7 0.00013 48.2 10.2 135 252-387 284-428 (510)
53 1u6g_C TIP120 protein, CAND1; 82.6 3 0.0001 54.2 10.1 128 252-386 941-1091(1230)
54 3ul1_B Importin subunit alpha- 81.9 3.8 0.00013 48.1 9.8 143 245-389 319-477 (510)
55 3tpo_A Importin subunit alpha- 81.4 3.7 0.00013 48.4 9.4 143 246-390 339-497 (529)
56 1jdh_A Beta-catenin; beta-cate 81.0 2.4 8.3E-05 48.9 7.6 130 255-386 323-486 (529)
57 2z6h_A Catenin beta-1, beta-ca 80.2 4.3 0.00015 48.9 9.6 132 253-386 25-166 (644)
58 2of3_A ZYG-9; multifunctional 79.0 25 0.00085 38.3 14.2 144 234-386 80-233 (266)
59 1w63_A Adapter-related protein 78.8 4.3 0.00015 49.1 9.0 93 252-354 323-415 (618)
60 1jdh_A Beta-catenin; beta-cate 78.7 3.6 0.00012 47.4 8.1 131 253-385 28-168 (529)
61 3m1i_C Exportin-1; heat repeat 76.8 1.3E+02 0.0044 38.4 22.3 130 255-386 208-370 (1049)
62 1lrv_A LRV, leucine-rich repea 75.8 3.8 0.00013 44.1 6.5 93 246-384 102-194 (244)
63 2z6h_A Catenin beta-1, beta-ca 72.8 9.6 0.00033 45.8 9.9 133 252-386 234-379 (644)
64 4hat_C Exportin-1; heat repeat 71.7 2.3E+02 0.0079 36.4 25.5 74 229-311 189-264 (1023)
65 1xm9_A Plakophilin 1; armadill 71.1 17 0.00057 42.0 11.0 129 255-386 297-446 (457)
66 2z6g_A B-catenin; FULL-length, 70.8 6.4 0.00022 48.9 7.9 131 253-385 161-301 (780)
67 2z6g_A B-catenin; FULL-length, 66.5 6.1 0.00021 49.2 6.3 134 247-386 120-260 (780)
68 3grl_A General vesicular trans 65.0 31 0.0011 42.1 11.7 131 255-385 35-191 (651)
69 2vgl_A Adaptor protein complex 60.6 16 0.00055 44.2 8.4 74 235-311 144-217 (621)
70 3ibv_A Exportin-T; karyopherin 59.8 18 0.00062 46.3 9.0 94 254-349 205-302 (980)
71 3gs3_A Symplekin, LD45768P; he 57.5 2.1E+02 0.0071 30.8 17.4 127 257-391 30-175 (257)
72 3l6x_A Catenin delta-1; cateni 57.4 51 0.0017 39.8 11.8 129 255-386 322-473 (584)
73 3o2t_A Symplekin; heat repeat, 54.1 59 0.002 37.2 11.1 126 258-391 41-185 (386)
74 2x19_B Importin-13; nuclear tr 51.2 78 0.0027 39.6 12.7 132 255-386 698-843 (963)
75 1wa5_C Importin alpha RE-expor 47.9 24 0.00082 44.6 7.3 97 255-352 471-584 (960)
76 3now_A UNC-45 protein, SD10334 46.2 41 0.0014 42.2 8.8 141 245-386 498-649 (810)
77 4ady_A RPN2, 26S proteasome re 44.2 1E+02 0.0034 39.4 11.8 120 253-384 519-671 (963)
78 2rg8_A Programmed cell death p 42.7 29 0.001 34.9 5.6 67 321-388 41-114 (165)
79 2x1g_F Cadmus; transport prote 41.5 53 0.0018 41.3 9.0 94 253-353 517-615 (971)
80 3m1i_C Exportin-1; heat repeat 39.9 20 0.0007 45.8 4.9 81 253-333 815-904 (1049)
81 4ady_A RPN2, 26S proteasome re 38.0 1.1E+02 0.0038 39.0 10.9 89 253-354 589-677 (963)
82 1xm9_A Plakophilin 1; armadill 37.1 80 0.0028 36.2 8.9 102 284-386 5-113 (457)
83 2ion_A PDCD4, programmed cell 34.6 57 0.002 32.3 6.1 67 320-386 39-113 (152)
84 2x19_B Importin-13; nuclear tr 33.6 49 0.0017 41.4 6.8 76 255-330 786-866 (963)
85 3oc3_A Helicase MOT1, MOT1; re 33.2 99 0.0034 37.4 8.6 107 248-370 229-340 (800)
86 3now_A UNC-45 protein, SD10334 31.4 80 0.0027 39.6 8.0 130 253-386 634-779 (810)
87 2nsz_A Programmed cell death p 30.5 73 0.0025 30.6 6.0 66 320-385 37-110 (129)
88 2x1g_F Cadmus; transport prote 26.8 1.9E+02 0.0065 36.2 10.5 95 257-354 204-326 (971)
89 3eiq_C Programmed cell death p 26.8 65 0.0022 36.5 5.6 67 322-389 86-159 (358)
90 3opb_A SWI5-dependent HO expre 26.7 2.3E+02 0.0077 35.4 10.7 100 253-354 617-729 (778)
91 3ibv_A Exportin-T; karyopherin 25.9 1E+02 0.0034 39.5 7.7 87 235-327 491-585 (980)
92 2zu6_B Programmed cell death p 25.5 57 0.002 36.1 4.8 64 321-385 34-104 (307)
93 3l6a_A Eukaryotic translation 24.0 87 0.003 35.4 6.0 65 321-385 44-115 (364)
94 3l9t_A Putative uncharacterize 23.8 4.7E+02 0.016 27.9 11.2 100 268-384 62-163 (240)
95 3opb_A SWI5-dependent HO expre 22.1 3.1E+02 0.011 34.2 10.7 133 252-386 568-725 (778)
96 2km4_A Regulator of TY1 transp 21.4 1.8E+02 0.0063 28.2 7.0 72 294-366 53-128 (142)
97 1ug3_A EIF4GI, eukaryotic prot 21.3 1.8E+02 0.0062 32.2 7.9 65 321-385 42-113 (339)
98 2f31_A Diaphanous protein homo 20.9 2.5E+02 0.0085 29.3 8.5 99 255-354 67-181 (233)
99 3nmw_A APC variant protein; AR 20.7 1.7E+02 0.0059 32.6 7.6 130 255-386 184-331 (354)
100 2xpp_A IWS1, ECU08_0440; trans 20.4 43 0.0015 33.2 2.2 82 146-271 55-136 (145)
No 1
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=96.62 E-value=0.0099 Score=60.98 Aligned_cols=110 Identities=22% Similarity=0.261 Sum_probs=83.9
Q ss_pred cCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhh
Q 001345 252 RDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIE 331 (1096)
Q Consensus 252 RDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~Rlve 331 (1096)
.|-+|.+|..++..||..- ++..+..|--+|.|+++.||..++.+|..+-. + ...+.|++
T Consensus 60 ~~~~~~vr~~a~~aL~~~~--------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-~-----------~~~~~L~~ 119 (211)
T 3ltm_A 60 KDEDAWVRRAAADALGQIG--------DERAVEPLIKALKDEDGWVRQSAAVALGQIGD-E-----------RAVEPLIK 119 (211)
T ss_dssp TCSCHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-G-----------GGHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhhC--------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-H-----------HHHHHHHH
Confidence 5678999999999998642 34567777788899999999999999887742 1 13456777
Q ss_pred hcccCchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcCCChHHHHHHHHHHHH
Q 001345 332 LADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVYD 386 (1096)
Q Consensus 332 Ma~D~D~~V~v~AI~Ll~~L~~~~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~ 386 (1096)
+..|.|..|+..|+..|..+- .++-+..+..++-|.++.||.+|..-+..
T Consensus 120 ~l~d~~~~vr~~a~~aL~~~~-----~~~~~~~L~~~l~d~~~~vr~~a~~aL~~ 169 (211)
T 3ltm_A 120 ALKDEDWFVRIAAAFALGEIG-----DERAVEPLIKALKDEDGWVRQSAADALGE 169 (211)
T ss_dssp HTTCSSHHHHHHHHHHHHHHC-----CGGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 778899999999999888773 23456677778888889999888877653
No 2
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=96.48 E-value=0.017 Score=58.75 Aligned_cols=110 Identities=22% Similarity=0.262 Sum_probs=82.9
Q ss_pred cCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhh
Q 001345 252 RDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIE 331 (1096)
Q Consensus 252 RDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~Rlve 331 (1096)
.|-+|.+|..++..||..- ++..+..|--+|.|+++.||..++.+|..+-. + ...+.|+.
T Consensus 55 ~~~~~~vr~~a~~~L~~~~--------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~-----------~~~~~L~~ 114 (201)
T 3ltj_A 55 KDEDAWVRRAAADALGQIG--------DERAVEPLIKALKDEDGWVRQSAAVALGQIGD-E-----------RAVEPLIK 114 (201)
T ss_dssp TCSSHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-G-----------GGHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhhC--------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-H-----------HHHHHHHH
Confidence 3668899999999998641 34567777778899999999999999888642 1 13456777
Q ss_pred hcccCchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcCCChHHHHHHHHHHHH
Q 001345 332 LADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVYD 386 (1096)
Q Consensus 332 Ma~D~D~~V~v~AI~Ll~~L~~~~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~ 386 (1096)
+..|.|+.|+..|+..|..+-. ++-+..+..++-|.++.||.+|..-+..
T Consensus 115 ~l~d~~~~vr~~a~~aL~~~~~-----~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 164 (201)
T 3ltj_A 115 ALKDEDWFVRIAAAFALGEIGD-----ERAVEPLIKALKDEDGWVRQSAADALGE 164 (201)
T ss_dssp HTTCSSHHHHHHHHHHHHHHTC-----GGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHhCC-----HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 7788899999999988887742 3455677778888888999888877653
No 3
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=96.39 E-value=0.016 Score=58.89 Aligned_cols=110 Identities=19% Similarity=0.128 Sum_probs=87.7
Q ss_pred ccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHh
Q 001345 251 YRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMI 330 (1096)
Q Consensus 251 yRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~Rlv 330 (1096)
..|-+|.+|..++..||..- ++..+..|--+|.|+++.||..++.+|..+-. + ...+.|+
T Consensus 85 l~d~~~~vr~~a~~aL~~~~--------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~-----------~~~~~L~ 144 (201)
T 3ltj_A 85 LKDEDGWVRQSAAVALGQIG--------DERAVEPLIKALKDEDWFVRIAAAFALGEIGD-E-----------RAVEPLI 144 (201)
T ss_dssp TTCSSHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-G-----------GGHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHhC--------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-H-----------HHHHHHH
Confidence 35889999999999999742 34577778888999999999999999998842 1 1345677
Q ss_pred hhcccCchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcCCChHHHHHHHHHHH
Q 001345 331 ELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVY 385 (1096)
Q Consensus 331 eMa~D~D~~V~v~AI~Ll~~L~~~~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~ 385 (1096)
.+..|.|..|+..|+..|..+- +++-+..+..++-|.++.||.+|.+-+.
T Consensus 145 ~~l~d~~~~vr~~A~~aL~~~~-----~~~~~~~L~~~l~d~~~~vr~~A~~aL~ 194 (201)
T 3ltj_A 145 KALKDEDGWVRQSAADALGEIG-----GERVRAAMEKLAETGTGFARKVAVNYLE 194 (201)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHC-----SHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHhC-----chhHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 8888999999999999988882 2334556677777899999999988764
No 4
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=96.36 E-value=0.011 Score=69.27 Aligned_cols=130 Identities=12% Similarity=0.092 Sum_probs=85.3
Q ss_pred cCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhh
Q 001345 252 RDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIE 331 (1096)
Q Consensus 252 RDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~Rlve 331 (1096)
.|-++.+|..+++.||.+....+..|+.+..+..+-..|.|++..||..++.+|..+...-. + ..+...+-+.|+.
T Consensus 412 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~--~--~~~~~~llp~l~~ 487 (588)
T 1b3u_A 412 EDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFG--K--EWAHATIIPKVLA 487 (588)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC--H--HHHHHHTHHHHHH
T ss_pred cCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC--c--hhHHHHHHHHHHH
Confidence 56777788888888887777777667766677777777888888888888888877764311 0 1234566677777
Q ss_pred hcccCchhHHHHHHHHHHHHHhc-C--CCCCCChhhHHhhhcCCChHHHHHHHHHHH
Q 001345 332 LADDIDVSVAVCAIGLVKQLLRH-Q--LLPDDDLGPLYDLLIDDPPEIRRAIGELVY 385 (1096)
Q Consensus 332 Ma~D~D~~V~v~AI~Ll~~L~~~-~--~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~ 385 (1096)
+..|.++.||..|+..+..|.+. | ...+.=+..+..++-|.++.||.+|..-+.
T Consensus 488 ~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~ 544 (588)
T 1b3u_A 488 MSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQ 544 (588)
T ss_dssp TTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred HhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHH
Confidence 77778888888888877777653 1 000111223344445777777777766554
No 5
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=96.32 E-value=0.015 Score=59.68 Aligned_cols=110 Identities=23% Similarity=0.171 Sum_probs=89.3
Q ss_pred cCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhh
Q 001345 252 RDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIE 331 (1096)
Q Consensus 252 RDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~Rlve 331 (1096)
.|-+|.+|..++..||..- ++..+..|-..|.|+++.||..++.+|..+-. + ..-+.|++
T Consensus 29 ~~~~~~vR~~A~~~L~~~~--------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-~-----------~~~~~L~~ 88 (211)
T 3ltm_A 29 QDDSYYVRRAAAYALGKIG--------DERAVEPLIKALKDEDAWVRRAAADALGQIGD-E-----------RAVEPLIK 88 (211)
T ss_dssp TCSSHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-G-----------GGHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhC--------CccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-H-----------HHHHHHHH
Confidence 5789999999999999641 24677888889999999999999999988742 1 13356677
Q ss_pred hcccCchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcCCChHHHHHHHHHHHH
Q 001345 332 LADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVYD 386 (1096)
Q Consensus 332 Ma~D~D~~V~v~AI~Ll~~L~~~~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~ 386 (1096)
+..|.|+.|+..|+..|..+- +++-+..+..++-|.++.||.+|..-+..
T Consensus 89 ~l~~~~~~vr~~a~~aL~~~~-----~~~~~~~L~~~l~d~~~~vr~~a~~aL~~ 138 (211)
T 3ltm_A 89 ALKDEDGWVRQSAAVALGQIG-----DERAVEPLIKALKDEDWFVRIAAAFALGE 138 (211)
T ss_dssp HTTCSSHHHHHHHHHHHHHHC-----CGGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHhC-----cHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 778999999999999988774 34456788888889999999999887754
No 6
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=96.32 E-value=1.3 Score=55.29 Aligned_cols=103 Identities=23% Similarity=0.281 Sum_probs=81.3
Q ss_pred cccCCChhHHHHHHHHHHHHHhhCcccccc--chhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHH
Q 001345 250 RYRDIDPNIRMSCIQSLGVWILSYPSFFLQ--DLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSN 327 (1096)
Q Consensus 250 RyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~--d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~ 327 (1096)
-..|.++++|..++..|+.++...|..+.. +.+++.+.-.++|+++.||..++.+|..|.+.. ...+..+...+-+
T Consensus 182 ~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~--~~~~~~~l~~l~~ 259 (852)
T 4fdd_A 182 FFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVR--MDRLLPHMHNIVE 259 (852)
T ss_dssp TTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHC--HHHHGGGHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHH
Confidence 446889999999999999988777665433 467888888899999999999999999998642 1223344445666
Q ss_pred HHhhhcccCchhHHHHHHHHHHHHHhc
Q 001345 328 RMIELADDIDVSVAVCAIGLVKQLLRH 354 (1096)
Q Consensus 328 RlveMa~D~D~~V~v~AI~Ll~~L~~~ 354 (1096)
-++....|.|.+|+..|+..+..+.+.
T Consensus 260 ~l~~~~~~~~~~vr~~a~e~l~~l~~~ 286 (852)
T 4fdd_A 260 YMLQRTQDQDENVALEACEFWLTLAEQ 286 (852)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHTTS
T ss_pred HHHHHccCCcHHHHHHHHHHHHHHhcc
Confidence 667777899999999999999888765
No 7
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=96.27 E-value=0.02 Score=61.31 Aligned_cols=117 Identities=19% Similarity=0.114 Sum_probs=87.0
Q ss_pred cCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhh
Q 001345 252 RDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIE 331 (1096)
Q Consensus 252 RDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~Rlve 331 (1096)
.|-+|.+|..++..||..-...|. ..+..+..+-..|.|+++.||..++.+|..+-. ++ .-+.|++
T Consensus 101 ~d~~~~vr~~a~~aL~~l~~~~~~--~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-~~-----------~~~~L~~ 166 (280)
T 1oyz_A 101 NDKSACVRATAIESTAQRCKKNPI--YSPKIVEQSQITAFDKSTNVRRATAFAISVIND-KA-----------TIPLLIN 166 (280)
T ss_dssp HCSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----C-----------CHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhccCCc--ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-HH-----------HHHHHHH
Confidence 478899999999999987544442 234567788888999999999999999987643 21 3456777
Q ss_pred hcccCchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcCCChHHHHHHHHHHH
Q 001345 332 LADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVY 385 (1096)
Q Consensus 332 Ma~D~D~~V~v~AI~Ll~~L~~~~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~ 385 (1096)
+..|.|..|+..|+..|..+- .-+++-+..+..++-|.++.||.+|..-+.
T Consensus 167 ~l~d~~~~vr~~a~~aL~~~~---~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~ 217 (280)
T 1oyz_A 167 LLKDPNGDVRNWAAFAININK---YDNSDIRDCFVEMLQDKNEEVRIEAIIGLS 217 (280)
T ss_dssp HHTCSSHHHHHHHHHHHHHHT---CCCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHhhc---cCcHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 778999999999999887762 223334567777778889999998887764
No 8
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=96.25 E-value=0.0063 Score=71.47 Aligned_cols=131 Identities=18% Similarity=0.138 Sum_probs=100.0
Q ss_pred cCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhh
Q 001345 252 RDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIE 331 (1096)
Q Consensus 252 RDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~Rlve 331 (1096)
.|-+|.+|..+++.||.+....|.....+..+.++--+++|.+..||..++.+|..+...-. -..+...+.+.+..
T Consensus 174 ~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~~~~~l~~ 249 (588)
T 1b3u_A 174 SDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLP----QEDLEALVMPTLRQ 249 (588)
T ss_dssp TCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSC----HHHHHHHTHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCC----HHHHHHHHHHHHHH
Confidence 68899999999999999998887654445667788888999999999999999998875321 12355567777788
Q ss_pred hcccCchhHHHHHHHHHHHHHhc-C--CCCCCChhhHHhhhcCCChHHHHHHHHHHHH
Q 001345 332 LADDIDVSVAVCAIGLVKQLLRH-Q--LLPDDDLGPLYDLLIDDPPEIRRAIGELVYD 386 (1096)
Q Consensus 332 Ma~D~D~~V~v~AI~Ll~~L~~~-~--~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~ 386 (1096)
++.|.++.||..|++.+..|... | ...++=+..+..++-|.++.||.+|+..+..
T Consensus 250 ~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 307 (588)
T 1b3u_A 250 AAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKE 307 (588)
T ss_dssp HHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 88999999999999999988874 2 0011113345566668999999998876543
No 9
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=95.93 E-value=0.043 Score=57.90 Aligned_cols=134 Identities=9% Similarity=0.124 Sum_probs=105.5
Q ss_pred ccccCCChhHHHHHHHHHHHHHhhCccccccc---hhhhhhhhhcC-CCChhHHHHHHHHHHhhhhcCCCcccHHHHHHH
Q 001345 249 HRYRDIDPNIRMSCIQSLGVWILSYPSFFLQD---LYLKYLGWTLN-DKSASVRKSSVLALQNLYEVDDNVPTLGLFTER 324 (1096)
Q Consensus 249 hRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d---~YLKYlGW~L~-Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~R 324 (1096)
....|-+...|...+..|+.=+...|. +..+ ..+.+|.-.|. |+++.||..++.+|..|-.. ..+.+..+...
T Consensus 22 ~~l~s~~w~~R~~a~~~L~~l~~~~~~-~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~--l~~~~~~~~~~ 98 (242)
T 2qk2_A 22 DKLEEKKWTLRKESLEVLEKLLTDHPK-LENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKG--LAKRFSNYASA 98 (242)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHCSS-BCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH--HGGGGHHHHHH
T ss_pred hhhccCCHHHHHHHHHHHHHHHccCCC-CCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH--HhhhHHHHHHH
Confidence 344588999999999999999988765 3333 34666666785 99999999999999999853 23456788888
Q ss_pred HHHHHhhhcccCchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcCCChHHHHHHHHHHHH
Q 001345 325 FSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVYD 386 (1096)
Q Consensus 325 Fk~RlveMa~D~D~~V~v~AI~Ll~~L~~~~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~ 386 (1096)
+-+-|++...|+...|+..|...+..+....-+ +.=+..+...+-+.++.+|..+..++..
T Consensus 99 ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~-~~ll~~l~~~l~~~~~~vr~~~l~~l~~ 159 (242)
T 2qk2_A 99 CVPSLLEKFKEKKPNVVTALREAIDAIYASTSL-EAQQESIVESLSNKNPSVKSETALFIAR 159 (242)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH-HHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 999999999999999999999999999886311 1123455566668899999999999865
No 10
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=95.90 E-value=0.031 Score=56.85 Aligned_cols=131 Identities=11% Similarity=0.079 Sum_probs=102.2
Q ss_pred CCChhHHHHHHHHHHHHHhhCcc---ccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHH-HHHHHHHHH
Q 001345 253 DIDPNIRMSCIQSLGVWILSYPS---FFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLG-LFTERFSNR 328 (1096)
Q Consensus 253 Dv~p~IR~~Ci~eLG~Wi~~yP~---~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~-lFt~RFk~R 328 (1096)
+-+|++|..++..||.-....|. .+++...+..|-.+|.+.++.||..++.+|..|-...+ .... ......-+.
T Consensus 65 ~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~~i~~ 142 (210)
T 4db6_A 65 SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN--EQIQAVIDAGALPA 142 (210)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH--HHHHHHHHTTHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCH--HHHHHHHHcCcHHH
Confidence 44899999999999976544443 46777889999999999999999999999999975321 1222 233457788
Q ss_pred HhhhcccCchhHHHHHHHHHHHHHhcC------CCCCCChhhHHhhhcCCChHHHHHHHHHHH
Q 001345 329 MIELADDIDVSVAVCAIGLVKQLLRHQ------LLPDDDLGPLYDLLIDDPPEIRRAIGELVY 385 (1096)
Q Consensus 329 lveMa~D~D~~V~v~AI~Ll~~L~~~~------~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~ 385 (1096)
|+.+..+.|..|+..|+..|..|...+ +.+..-+..+.+++-+.++.++..|...+.
T Consensus 143 L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~ 205 (210)
T 4db6_A 143 LVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALE 205 (210)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999998889999999999999998762 223334567788888999999999988765
No 11
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=95.74 E-value=0.022 Score=59.14 Aligned_cols=132 Identities=14% Similarity=0.162 Sum_probs=101.5
Q ss_pred CCChhHHHHHHHHHHHHHhhCc---cccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhh-cCCCcccHHHHHHHHHHH
Q 001345 253 DIDPNIRMSCIQSLGVWILSYP---SFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYE-VDDNVPTLGLFTERFSNR 328 (1096)
Q Consensus 253 Dv~p~IR~~Ci~eLG~Wi~~yP---~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~-~~~~~~~L~lFt~RFk~R 328 (1096)
+-++++|..++..|+.-....| ..+.+...+..|-.+|.+.++.||..++.+|..|-. +++... .......-+.
T Consensus 55 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~--~~~~~~~i~~ 132 (252)
T 4hxt_A 55 STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK--AIVDAGGVEV 132 (252)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHH--HHHHTTHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH--HHHHCCCHHH
Confidence 3569999999999998775533 356777889999999999999999999999999984 332221 1222346778
Q ss_pred HhhhcccCchhHHHHHHHHHHHHHhcC------CCCCCChhhHHhhhcCCChHHHHHHHHHHHH
Q 001345 329 MIELADDIDVSVAVCAIGLVKQLLRHQ------LLPDDDLGPLYDLLIDDPPEIRRAIGELVYD 386 (1096)
Q Consensus 329 lveMa~D~D~~V~v~AI~Ll~~L~~~~------~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~ 386 (1096)
|+.+..+.|..|+..|+..|..|.... +++..-+..+..++-+.++.++..|...+..
T Consensus 133 L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 196 (252)
T 4hxt_A 133 LVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALAN 196 (252)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999997641 2233345567777778888888888887764
No 12
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=95.51 E-value=0.056 Score=57.00 Aligned_cols=103 Identities=11% Similarity=0.180 Sum_probs=84.0
Q ss_pred eccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHH
Q 001345 248 VHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSN 327 (1096)
Q Consensus 248 vhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~ 327 (1096)
..+.+|-.+.+|..+...|..++...+- +..+..+.-.|.|+++.||..++..|..+...-........+...+-+
T Consensus 104 l~~l~d~~~~vr~~a~~aL~~~~~~~~~----~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p 179 (242)
T 2qk2_A 104 LEKFKEKKPNVVTALREAIDAIYASTSL----EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTT 179 (242)
T ss_dssp HHGGGCCCHHHHHHHHHHHHHHHTTSCH----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHcCCH----HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHH
Confidence 3578899999999999999999987652 456677777899999999999999999987542111123455667888
Q ss_pred HHhhhcccCchhHHHHHHHHHHHHHhc
Q 001345 328 RMIELADDIDVSVAVCAIGLVKQLLRH 354 (1096)
Q Consensus 328 RlveMa~D~D~~V~v~AI~Ll~~L~~~ 354 (1096)
-++.+..|.+.+||..|+..+..|.+.
T Consensus 180 ~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 180 SLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998876
No 13
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=95.31 E-value=0.064 Score=55.50 Aligned_cols=133 Identities=14% Similarity=0.145 Sum_probs=102.6
Q ss_pred cCCChhHHHHHHHHHHHHHhhCc---cccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhc-CCCcccHHHHHHHHHH
Q 001345 252 RDIDPNIRMSCIQSLGVWILSYP---SFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEV-DDNVPTLGLFTERFSN 327 (1096)
Q Consensus 252 RDv~p~IR~~Ci~eLG~Wi~~yP---~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~-~~~~~~L~lFt~RFk~ 327 (1096)
++-+|++|..++..|+......| ..+.+...+..|--.|.+.+..||..++.+|..|-.. ++.. -.......-+
T Consensus 12 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~--~~~~~~~~i~ 89 (252)
T 4hxt_A 12 TSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI--KAIVDAGGVE 89 (252)
T ss_dssp TCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH--HHHHHTTHHH
T ss_pred cCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHH--HHHHHCCCHH
Confidence 34459999999999999887766 3567778899999999999999999999999999764 2221 1222334567
Q ss_pred HHhhhcccCchhHHHHHHHHHHHHHhcC------CCCCCChhhHHhhhcCCChHHHHHHHHHHHH
Q 001345 328 RMIELADDIDVSVAVCAIGLVKQLLRHQ------LLPDDDLGPLYDLLIDDPPEIRRAIGELVYD 386 (1096)
Q Consensus 328 RlveMa~D~D~~V~v~AI~Ll~~L~~~~------~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~ 386 (1096)
.++.+..+.|.+|+..|+..|..|.... +++..-+..+.+++-+.++.++..|...+..
T Consensus 90 ~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~ 154 (252)
T 4hxt_A 90 VLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALAN 154 (252)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 8889998999999999999999998531 2233345677777888888888888877664
No 14
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=95.24 E-value=0.062 Score=54.60 Aligned_cols=134 Identities=12% Similarity=0.086 Sum_probs=102.3
Q ss_pred ccCCChhHHHHHHHHHHHHHhhCcc---ccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhh-cCCCcccHHHHHHHHH
Q 001345 251 YRDIDPNIRMSCIQSLGVWILSYPS---FFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYE-VDDNVPTLGLFTERFS 326 (1096)
Q Consensus 251 yRDv~p~IR~~Ci~eLG~Wi~~yP~---~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~-~~~~~~~L~lFt~RFk 326 (1096)
.++-++++|..++..|+.-....|. .+++..-+..|-..|.+.++.||..++.+|..|-. +++... ...-.-.-
T Consensus 21 L~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~--~i~~~g~i 98 (210)
T 4db6_A 21 LNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ--AVIDAGAL 98 (210)
T ss_dssp TTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH--HHHHTTCH
T ss_pred hcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH--HHHHCCCH
Confidence 3567899999999999987755443 57777889999999999999999999999999974 322211 11222355
Q ss_pred HHHhhhcccCchhHHHHHHHHHHHHHhcC------CCCCCChhhHHhhhcCCChHHHHHHHHHHHH
Q 001345 327 NRMIELADDIDVSVAVCAIGLVKQLLRHQ------LLPDDDLGPLYDLLIDDPPEIRRAIGELVYD 386 (1096)
Q Consensus 327 ~RlveMa~D~D~~V~v~AI~Ll~~L~~~~------~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~ 386 (1096)
+.|+.+..+.|..|+..|+..|..|.... +++..-+..+.+++-+.++.++..|...+..
T Consensus 99 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~ 164 (210)
T 4db6_A 99 PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 164 (210)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 78899998889999999999999998641 2233345577788888889999988887664
No 15
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=95.24 E-value=0.062 Score=57.49 Aligned_cols=120 Identities=18% Similarity=0.135 Sum_probs=84.8
Q ss_pred cCCChhHHHHHHHHHHHHHhhCccccccchhhhhhh-hhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHh
Q 001345 252 RDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLG-WTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMI 330 (1096)
Q Consensus 252 RDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlG-W~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~Rlv 330 (1096)
+|-+|.+|..++..||..-. .+.. + +..+..+- ++++|+++.||..++.+|..+-... ..+...+-+.++
T Consensus 64 ~d~~~~vR~~A~~aL~~l~~-~~~~-~-~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~------~~~~~~~~~~L~ 134 (280)
T 1oyz_A 64 SDKNYIRRDIGAFILGQIKI-CKKC-E-DNVFNILNNMALNDKSACVRATAIESTAQRCKKN------PIYSPKIVEQSQ 134 (280)
T ss_dssp TCSSHHHHHHHHHHHHHSCC-CTTT-H-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHC------GGGHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhcc-cccc-c-hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC------CcccHHHHHHHH
Confidence 57789999999999986421 1111 1 12334444 5689999999999999999886322 123345667778
Q ss_pred hhcccCchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcCCChHHHHHHHHHHH
Q 001345 331 ELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVY 385 (1096)
Q Consensus 331 eMa~D~D~~V~v~AI~Ll~~L~~~~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~ 385 (1096)
.+..|.|+.|+..|+..|..+-. ++-+..+..++-|.++.||.+|..-+.
T Consensus 135 ~~l~d~~~~vR~~a~~aL~~~~~-----~~~~~~L~~~l~d~~~~vr~~a~~aL~ 184 (280)
T 1oyz_A 135 ITAFDKSTNVRRATAFAISVIND-----KATIPLLINLLKDPNGDVRNWAAFAIN 184 (280)
T ss_dssp HHTTCSCHHHHHHHHHHHHTC--------CCHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHhhCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 88889999999999987765432 345678888888999999999887764
No 16
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=95.14 E-value=0.15 Score=53.28 Aligned_cols=134 Identities=11% Similarity=0.058 Sum_probs=103.9
Q ss_pred cCCChhHHHHHHHHHHHHHhhCc---cccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHH
Q 001345 252 RDIDPNIRMSCIQSLGVWILSYP---SFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNR 328 (1096)
Q Consensus 252 RDv~p~IR~~Ci~eLG~Wi~~yP---~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~R 328 (1096)
++-+|++|..++..|+.-....| ..+++...+..|-.+|.+.++.||..++.+|..|-..++.. .-...-...-+.
T Consensus 64 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~ 142 (252)
T 4db8_A 64 SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ-IQAVIDAGALPA 142 (252)
T ss_dssp GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH-HHHHHHTTHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchH-HHHHHHCCCHHH
Confidence 34569999999999997765443 35667788999999999999999999999999997654322 012223346678
Q ss_pred HhhhcccCchhHHHHHHHHHHHHHhcC------CCCCCChhhHHhhhcCCChHHHHHHHHHHHH
Q 001345 329 MIELADDIDVSVAVCAIGLVKQLLRHQ------LLPDDDLGPLYDLLIDDPPEIRRAIGELVYD 386 (1096)
Q Consensus 329 lveMa~D~D~~V~v~AI~Ll~~L~~~~------~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~ 386 (1096)
|+.+..+.|..|+..|+..|..|.... +.+..-+..+..++-+.++.++..|...+..
T Consensus 143 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 206 (252)
T 4db8_A 143 LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 206 (252)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 999998899999999999999998742 2233445678888889999999999888764
No 17
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=95.06 E-value=0.045 Score=57.26 Aligned_cols=131 Identities=11% Similarity=0.071 Sum_probs=100.4
Q ss_pred CCChhHHHHHHHHHHHHHhhCcc---ccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHH-HHHHHHHH
Q 001345 253 DIDPNIRMSCIQSLGVWILSYPS---FFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGL-FTERFSNR 328 (1096)
Q Consensus 253 Dv~p~IR~~Ci~eLG~Wi~~yP~---~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~l-Ft~RFk~R 328 (1096)
+-+|++|..|+..|+.-....+. .+.+...+..|--.|.+.++.||..++.+|..|-...+ ..... .....-+.
T Consensus 107 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~~i~~ 184 (252)
T 4db8_A 107 SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN--EQIQAVIDAGALPA 184 (252)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH--HHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh--HHHHHHHHCCCHHH
Confidence 45799999999999977666553 47788889999999999999999999999999986431 11222 23456778
Q ss_pred HhhhcccCchhHHHHHHHHHHHHHhcC------CCCCCChhhHHhhhcCCChHHHHHHHHHHH
Q 001345 329 MIELADDIDVSVAVCAIGLVKQLLRHQ------LLPDDDLGPLYDLLIDDPPEIRRAIGELVY 385 (1096)
Q Consensus 329 lveMa~D~D~~V~v~AI~Ll~~L~~~~------~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~ 385 (1096)
|+++..+.|..|+..|+..|..|.... +++..-+..+..++-+.++.++..|...+.
T Consensus 185 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~ 247 (252)
T 4db8_A 185 LVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALE 247 (252)
T ss_dssp HHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999998889999999999999987531 223333456777778888888888877654
No 18
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=94.86 E-value=0.0073 Score=57.95 Aligned_cols=112 Identities=15% Similarity=0.055 Sum_probs=58.0
Q ss_pred eEeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHH
Q 001345 246 LFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERF 325 (1096)
Q Consensus 246 VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RF 325 (1096)
.++.-..|-+|.+|..++..||..- .| -...|--.|.|+++.||..++.+|..+-. ...
T Consensus 16 ~l~~~L~~~~~~vR~~A~~~L~~~~--~~-------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------------~~a 74 (131)
T 1te4_A 16 PRGSHMADENKWVRRDVSTALSRMG--DE-------AFEPLLESLSNEDWRIRGAAAWIIGNFQD------------ERA 74 (131)
T ss_dssp -----CCSSCCCSSSSCCSSTTSCS--ST-------THHHHHHGGGCSCHHHHHHHHHHHGGGCS------------HHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhC--ch-------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC------------HHH
Confidence 3444555666666666666665321 11 13445555666666677666666665531 112
Q ss_pred HHHHhhhcccCchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcCCChHHHHHHHHH
Q 001345 326 SNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGEL 383 (1096)
Q Consensus 326 k~RlveMa~D~D~~V~v~AI~Ll~~L~~~~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~f 383 (1096)
.+.|+.+..|.|+.|+..|+..|..+- +++-+..+..++-|.++.||.+|..-
T Consensus 75 ~~~L~~~L~d~~~~VR~~A~~aL~~~~-----~~~a~~~L~~~l~d~~~~vr~~A~~a 127 (131)
T 1te4_A 75 VEPLIKLLEDDSGFVRSGAARSLEQIG-----GERVRAAMEKLAETGTGFARKVAVNY 127 (131)
T ss_dssp HHHHHHHHHHCCTHHHHHHHHHHHHHC-----SHHHHHHHHHHTTSCCTHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhC-----cHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 334444445666666666666665543 12223445555556666666666543
No 19
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=94.82 E-value=0.27 Score=53.48 Aligned_cols=130 Identities=14% Similarity=0.207 Sum_probs=93.8
Q ss_pred ccHHHHHHHHH-HHHHhHHHHHHHHHhhhceeEeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCC
Q 001345 216 PRVESLNKRLS-MTHKNITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKS 294 (1096)
Q Consensus 216 ~r~e~l~~~~~-e~~~~~e~ie~~i~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~ 294 (1096)
.|++.|.+-.+ -++..-..+.+++..|+. |.+. -..++|.-|++-|+.=....| ++-...+--|-.+|.|.+
T Consensus 31 ~kl~~L~qa~el~~~~dp~ll~~~l~~il~--~~~~---~~~~vrk~~~~Fi~e~~~~k~--~l~~~~l~~L~~Ll~d~d 103 (257)
T 3gs3_A 31 TKCELLAKVQETVLGSCAELAEEFLESVLS--LAHD---SNMEVRKQVVAFVEQVCKVKV--ELLPHVINVVSMLLRDNS 103 (257)
T ss_dssp HHHHHHHHHHHHHTTTTGGGHHHHHHHHHG--GGGC---SCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHHHccCHhHHHHHHHHHHH--hccC---ChHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCCC
Confidence 45666654433 233344566777777776 5544 679999999999988887776 466667777777899999
Q ss_pred hhHHHHHHHHHHhhhh--------cCCC---c-ccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHh
Q 001345 295 ASVRKSSVLALQNLYE--------VDDN---V-PTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLR 353 (1096)
Q Consensus 295 ~~VR~~~L~aL~~Ly~--------~~~~---~-~~L~lFt~RFk~RlveMa~D~D~~V~v~AI~Ll~~L~~ 353 (1096)
+.|-..++.+...+|. ++.. . .....++. ||.+|+.|-.....+|+..||+.+..+.-
T Consensus 104 ~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~-lK~~Il~~~~s~n~gvkl~~iKF~e~vIl 173 (257)
T 3gs3_A 104 AQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSL-IKAQILDMIDNENDGIRTNAIKFLEGVVV 173 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHH-HHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH-HHHHHHHHHccCCcchHHHHHHHHHHHHH
Confidence 9999999999999993 2221 1 23455555 99999999766677888888887777654
No 20
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=94.25 E-value=0.15 Score=54.67 Aligned_cols=104 Identities=14% Similarity=0.140 Sum_probs=84.9
Q ss_pred cchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHH-HHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhcCCC
Q 001345 279 QDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGL-FTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLL 357 (1096)
Q Consensus 279 ~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~l-Ft~RFk~RlveMa~D~D~~V~v~AI~Ll~~L~~~~~L 357 (1096)
+..+|--+--.|+|+++.|+..+|.+|.++.+.-+ ..++. -++++-++||+++.+.|..|++.|++++..|+...=|
T Consensus 31 ~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~--~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL 108 (265)
T 3b2a_A 31 DKRALFLILELAGEDDETTRLRAFVALGEILKRAD--SDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPM 108 (265)
T ss_dssp CHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCB
T ss_pred chhHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc--ccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCC
Confidence 34577778888999999999999999999997532 23333 5778999999999999999999999999999999989
Q ss_pred CCCChhhHH----hhhcCCChHHHHHHHHHH
Q 001345 358 PDDDLGPLY----DLLIDDPPEIRRAIGELV 384 (1096)
Q Consensus 358 ~~ed~~~V~----~Lvfd~~~~Vr~AAg~fv 384 (1096)
++++...+. .++=..++.++-.|++-+
T Consensus 109 ~~~~y~Kl~~aL~dlik~~~~il~~eaae~L 139 (265)
T 3b2a_A 109 GSKTFLKAAKTLVSLLESPDDMMRIETIDVL 139 (265)
T ss_dssp CHHHHHHHHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCchHHHHHHHHh
Confidence 998887665 344467888887777653
No 21
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=93.99 E-value=0.26 Score=59.27 Aligned_cols=96 Identities=22% Similarity=0.360 Sum_probs=76.4
Q ss_pred EeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhh----hhhhcCCCChhHHHHHHHHHHhhhhc-CCCcccHHHH
Q 001345 247 FVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKY----LGWTLNDKSASVRKSSVLALQNLYEV-DDNVPTLGLF 321 (1096)
Q Consensus 247 FvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKY----lGW~L~Dk~~~VR~~~L~aL~~Ly~~-~~~~~~L~lF 321 (1096)
|..-..|-+|.||...+..||.-. .+....| +--+|.|+++.||.+|+.+|.++|.. ++. +..
T Consensus 91 l~kdL~~~n~~ir~~AL~~L~~i~--------~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~- 158 (591)
T 2vgl_B 91 FVKDCEDPNPLIRALAVRTMGCIR--------VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VED- 158 (591)
T ss_dssp HGGGSSSSSHHHHHHHHHHHHTCC--------SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHH-
T ss_pred HHHHcCCCCHHHHHHHHHHHHcCC--------hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---ccc-
Confidence 345567889999999999998542 3334444 77789999999999999999999974 332 222
Q ss_pred HHHHHHHHhhhcccCchhHHHHHHHHHHHHHhcC
Q 001345 322 TERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQ 355 (1096)
Q Consensus 322 t~RFk~RlveMa~D~D~~V~v~AI~Ll~~L~~~~ 355 (1096)
..|-+++.++..|.|+.|+..|+.++..|.+..
T Consensus 159 -~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~ 191 (591)
T 2vgl_B 159 -QGFLDSLRDLIADSNPMVVANAVAALSEISESH 191 (591)
T ss_dssp -HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSC
T ss_pred -ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhC
Confidence 457778899999999999999999999998763
No 22
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=93.94 E-value=0.0061 Score=58.54 Aligned_cols=99 Identities=19% Similarity=0.215 Sum_probs=62.3
Q ss_pred HhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHH
Q 001345 270 ILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVK 349 (1096)
Q Consensus 270 i~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlveMa~D~D~~V~v~AI~Ll~ 349 (1096)
|-.||.+...+.++..+-..|.|+++.||..++.+|..+-. + . + +.|+.+..|.|+.|+..|+..|.
T Consensus 1 ~~~~~~~~~~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-~----~-------~-~~L~~~L~d~~~~vR~~A~~aL~ 67 (131)
T 1te4_A 1 MGSSHHHHHHSSGLVPRGSHMADENKWVRRDVSTALSRMGD-E----A-------F-EPLLESLSNEDWRIRGAAAWIIG 67 (131)
T ss_dssp --------------------CCSSCCCSSSSCCSSTTSCSS-T----T-------H-HHHHHGGGCSCHHHHHHHHHHHG
T ss_pred CCcccccccccccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-h----H-------H-HHHHHHHcCCCHHHHHHHHHHHH
Confidence 45688999999999999999999999999999988876632 1 1 2 56778888999999999999876
Q ss_pred HHHhcCCCCCCChhhHHhhhcCCChHHHHHHHHHHHH
Q 001345 350 QLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVYD 386 (1096)
Q Consensus 350 ~L~~~~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~ 386 (1096)
.+- +++-+..+..++-|.++.||.+|+.-+-.
T Consensus 68 ~~~-----~~~a~~~L~~~L~d~~~~VR~~A~~aL~~ 99 (131)
T 1te4_A 68 NFQ-----DERAVEPLIKLLEDDSGFVRSGAARSLEQ 99 (131)
T ss_dssp GGC-----SHHHHHHHHHHHHHCCTHHHHHHHHHHHH
T ss_pred hcC-----CHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 653 23346677788889999999999887653
No 23
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=93.58 E-value=1.8 Score=47.20 Aligned_cols=56 Identities=18% Similarity=0.197 Sum_probs=51.2
Q ss_pred CChhHHHHHHHHHHHHHhhCccccccchhh---hhhhhhcCCCChhHHHHHHHHHHhhhhc
Q 001345 254 IDPNIRMSCIQSLGVWILSYPSFFLQDLYL---KYLGWTLNDKSASVRKSSVLALQNLYEV 311 (1096)
Q Consensus 254 v~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YL---KYlGW~L~Dk~~~VR~~~L~aL~~Ly~~ 311 (1096)
-.+..|.+|+.+|+.-|..|-..+ ..+| +-++-.|+|+++.||.+|+..+..+|..
T Consensus 179 KN~R~R~e~l~~l~~li~~~G~~~--~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 179 KNARQRSECLLVIEYYITNAGISP--LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCSGG--GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCc--cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 579999999999999999996664 6699 9999999999999999999999999964
No 24
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=93.14 E-value=0.21 Score=62.28 Aligned_cols=142 Identities=15% Similarity=0.125 Sum_probs=96.0
Q ss_pred HHHHhhhceeEeccccCCChhHHHHHHHHHHHHHhhCcccccc--chhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCC
Q 001345 237 DMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQ--DLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDN 314 (1096)
Q Consensus 237 ~~i~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~--d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~ 314 (1096)
+++..++. .-.|-++++|..+++.|+..+..+|..|.. +.-+.++--.+.|++..||..++..+..+.+.+..
T Consensus 215 ~~l~~l~~-----~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~ 289 (852)
T 4fdd_A 215 SFIENLFA-----LAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPIC 289 (852)
T ss_dssp HHHHHHHH-----HHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTH
T ss_pred HHHHHHHH-----HcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhH
Confidence 44444443 356899999999999999999999987543 23455666677999999999999999998765422
Q ss_pred cccHHHHHHHHHHHHhhhc-----------cc-----------CchhHHHHHHHHHHHHHhcCCCCCCChh----hHHhh
Q 001345 315 VPTLGLFTERFSNRMIELA-----------DD-----------IDVSVAVCAIGLVKQLLRHQLLPDDDLG----PLYDL 368 (1096)
Q Consensus 315 ~~~L~lFt~RFk~RlveMa-----------~D-----------~D~~V~v~AI~Ll~~L~~~~~L~~ed~~----~V~~L 368 (1096)
...+..+..+.-+-++.+. .| .+..|+..|...+..|.+.. .++-+. .+..+
T Consensus 290 ~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~--~~~~~~~l~~~l~~~ 367 (852)
T 4fdd_A 290 KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVY--RDELLPHILPLLKEL 367 (852)
T ss_dssp HHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHH--GGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHH
Confidence 2223344445555555443 23 44578888888888887752 222222 33455
Q ss_pred hcCCChHHHHHHHHHHH
Q 001345 369 LIDDPPEIRRAIGELVY 385 (1096)
Q Consensus 369 vfd~~~~Vr~AAg~fv~ 385 (1096)
+.+.++.+|.+|..-+.
T Consensus 368 l~~~~~~~R~aa~~alg 384 (852)
T 4fdd_A 368 LFHHEWVVKESGILVLG 384 (852)
T ss_dssp HTCSSHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHH
Confidence 56888999998887654
No 25
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=92.89 E-value=0.2 Score=60.30 Aligned_cols=131 Identities=13% Similarity=0.111 Sum_probs=90.0
Q ss_pred cCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhh
Q 001345 252 RDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIE 331 (1096)
Q Consensus 252 RDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~Rlve 331 (1096)
.|-+|.+|...+..|+.....+|+..-++.++..+.-+|+|+++.||..|+.+|..+.........+ .+....-.+|+.
T Consensus 131 ~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~-~l~~~~~~~Ll~ 209 (591)
T 2vgl_B 131 KDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLL-DLNPQNINKLLT 209 (591)
T ss_dssp SCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSC-CCHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccch-hccHHHHHHHHH
Confidence 4889999999999999999999998777788899999999999999999999999998653211001 112222335555
Q ss_pred hcccCchhHHHHHHHHHHHHHhcCCCCCCChh----hHHhhhcCCChHHHHHHHHHHHH
Q 001345 332 LADDIDVSVAVCAIGLVKQLLRHQLLPDDDLG----PLYDLLIDDPPEIRRAIGELVYD 386 (1096)
Q Consensus 332 Ma~D~D~~V~v~AI~Ll~~L~~~~~L~~ed~~----~V~~Lvfd~~~~Vr~AAg~fv~~ 386 (1096)
...|.++-+++..++++..+.. -++++.. .+..++-+.++.|+.+|+..+..
T Consensus 210 ~l~~~~~~~q~~il~~l~~l~~---~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~ 265 (591)
T 2vgl_B 210 ALNECTEWGQIFILDCLSNYNP---KDDREAQSICERVTPRLSHANSAVVLSAVKVLMK 265 (591)
T ss_dssp HHHHCCHHHHHHHHHHHHTSCC---CSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHH
T ss_pred cCCCCCchHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 5557788787777765543321 1222222 33334446777777777776653
No 26
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=92.88 E-value=0.38 Score=54.31 Aligned_cols=133 Identities=14% Similarity=0.102 Sum_probs=100.3
Q ss_pred cCCChhHHHHHHHHHHHHHhhCcc---ccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHH-HHHHH
Q 001345 252 RDIDPNIRMSCIQSLGVWILSYPS---FFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFT-ERFSN 327 (1096)
Q Consensus 252 RDv~p~IR~~Ci~eLG~Wi~~yP~---~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt-~RFk~ 327 (1096)
+|-++++|..++..||.-....|. .+++...+..|--.|.+.++.||..++.+|..|-... ......+. ..+-+
T Consensus 244 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~--~~~~~~~~~~~~l~ 321 (450)
T 2jdq_A 244 MHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGN--RAQIQTVIDANIFP 321 (450)
T ss_dssp TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSC--HHHHHHHHHTTHHH
T ss_pred CCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC--HHHHHHHHHCCCHH
Confidence 467899999999999987665553 3566778889999999999999999999999997422 12222232 35677
Q ss_pred HHhhhcccCchhHHHHHHHHHHHHHhcC-------CCCCCChhhHHhhhcCCChHHHHHHHHHHHH
Q 001345 328 RMIELADDIDVSVAVCAIGLVKQLLRHQ-------LLPDDDLGPLYDLLIDDPPEIRRAIGELVYD 386 (1096)
Q Consensus 328 RlveMa~D~D~~V~v~AI~Ll~~L~~~~-------~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~ 386 (1096)
.|+.+..|.+..|+..|+..+..|...+ +++..-+..+..++-+.++.|+..|...+..
T Consensus 322 ~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~ 387 (450)
T 2jdq_A 322 ALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLEN 387 (450)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 8888888889999999999999997653 1222234466677778889999988877654
No 27
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=92.87 E-value=0.41 Score=51.64 Aligned_cols=100 Identities=10% Similarity=0.048 Sum_probs=75.5
Q ss_pred ccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhc--CCCcccHHHHHHHHHHH
Q 001345 251 YRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEV--DDNVPTLGLFTERFSNR 328 (1096)
Q Consensus 251 yRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~--~~~~~~L~lFt~RFk~R 328 (1096)
.-|.-+.+|..+++.|-.|+..... ....+.++.-.|..|++.||.+|+..|..++.. ... .....+...+.+-
T Consensus 112 l~~~k~~~~~~a~~~l~~~~~~~~~---~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~-~~~k~~l~~i~~~ 187 (278)
T 4ffb_C 112 LTSSRATTKTQSMSCILSLCGLDTS---ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTN-VNVQTFLPELLKH 187 (278)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHTSSS---SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTT-CCHHHHHHHHGGG
T ss_pred hcCccHHHHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCc-CCchhHHHHHHHH
Confidence 4577899999999999999864321 122345666778999999999999999999754 111 1244555555555
Q ss_pred HhhhcccCchhHHHHHHHHHHHHHhc
Q 001345 329 MIELADDIDVSVAVCAIGLVKQLLRH 354 (1096)
Q Consensus 329 lveMa~D~D~~V~v~AI~Ll~~L~~~ 354 (1096)
+..+..|.|.+||..|++++..|++.
T Consensus 188 l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 188 VPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 66666899999999999999999996
No 28
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=92.79 E-value=0.37 Score=62.73 Aligned_cols=148 Identities=15% Similarity=0.195 Sum_probs=107.1
Q ss_pred HHHHHhhhceeEeccccCCChhHHHHHHHHHHHHHhhCcccccc--chhhhhhhhhcCCCCh--hHHHHHHHHHHhhhhc
Q 001345 236 EDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQ--DLYLKYLGWTLNDKSA--SVRKSSVLALQNLYEV 311 (1096)
Q Consensus 236 e~~i~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~--d~YLKYlGW~L~Dk~~--~VR~~~L~aL~~Ly~~ 311 (1096)
..++..++.. +....+|-.+.+|..|+..||.|+...|..+-. +..+..+-..|.|+++ .||.+++..+..+.+.
T Consensus 429 ~~~l~~ll~~-l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~ 507 (1230)
T 1u6g_C 429 QSQVPNIVKA-LHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCN 507 (1230)
T ss_dssp HHHTTHHHHH-HHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHS
T ss_pred HHHhhHHHHH-HHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHh
Confidence 3344444432 223467999999999999999999998865432 4667788899999985 9999999999999864
Q ss_pred CCCcccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhc-CCC---CCCC----hhhHHhh----h--cCCChHHH
Q 001345 312 DDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRH-QLL---PDDD----LGPLYDL----L--IDDPPEIR 377 (1096)
Q Consensus 312 ~~~~~~L~lFt~RFk~RlveMa~D~D~~V~v~AI~Ll~~L~~~-~~L---~~ed----~~~V~~L----v--fd~~~~Vr 377 (1096)
-. ...+..|...+-+.++....|....|+..|+..+..+.+. |-. .+.+ ++.++.. + .|.++.||
T Consensus 508 ~~-~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr 586 (1230)
T 1u6g_C 508 HS-PQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVK 586 (1230)
T ss_dssp SC-GGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHH
T ss_pred CC-HHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHH
Confidence 21 1236667888888999888999999999999999988865 321 1122 2334333 4 67889999
Q ss_pred HHHHHHHH
Q 001345 378 RAIGELVY 385 (1096)
Q Consensus 378 ~AAg~fv~ 385 (1096)
.+|..-+-
T Consensus 587 ~~a~~~lg 594 (1230)
T 1u6g_C 587 ERAISCMG 594 (1230)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88876543
No 29
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=92.56 E-value=0.39 Score=54.23 Aligned_cols=133 Identities=16% Similarity=0.070 Sum_probs=96.6
Q ss_pred cCCChhHHHHHHHHHHHHHhhCc---cccccchhhhhhhhhcCC-CChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHH
Q 001345 252 RDIDPNIRMSCIQSLGVWILSYP---SFFLQDLYLKYLGWTLND-KSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSN 327 (1096)
Q Consensus 252 RDv~p~IR~~Ci~eLG~Wi~~yP---~~FL~d~YLKYlGW~L~D-k~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~ 327 (1096)
++-+|++|..++..||.-....| ..+++...+..|--.|.+ .+..||..++.+|..|....+.......+ ...-+
T Consensus 117 ~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~ 195 (450)
T 2jdq_A 117 SSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLN 195 (450)
T ss_dssp TCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHH
T ss_pred cCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHH
Confidence 34589999999999998776544 346667788888888885 89999999999999998653111122222 45667
Q ss_pred HHhhhcccCchhHHHHHHHHHHHHHhcC------CCCCCChhhHHhhhcCCChHHHHHHHHHHH
Q 001345 328 RMIELADDIDVSVAVCAIGLVKQLLRHQ------LLPDDDLGPLYDLLIDDPPEIRRAIGELVY 385 (1096)
Q Consensus 328 RlveMa~D~D~~V~v~AI~Ll~~L~~~~------~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~ 385 (1096)
.|+.+..+.|..|+..|+..|..|.... +....-+..+..++-+.++.++.+|...+.
T Consensus 196 ~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 259 (450)
T 2jdq_A 196 VLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVG 259 (450)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHH
Confidence 8888888899999999999998887642 111223456667777777777777776654
No 30
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=92.44 E-value=0.74 Score=52.91 Aligned_cols=129 Identities=19% Similarity=0.256 Sum_probs=87.4
Q ss_pred ccHHHHHHHHHH-HHHhHHHHHHHHHhhhceeEeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCC
Q 001345 216 PRVESLNKRLSM-THKNITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKS 294 (1096)
Q Consensus 216 ~r~e~l~~~~~e-~~~~~e~ie~~i~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~ 294 (1096)
.+++.|.+-.+- ++.....+.+++..|+. |.+ |-..+||.-|++-|+.=...+++.- ...+-.|-.+|.|.+
T Consensus 41 ~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~--f~~---d~~~~vRk~~a~FieEa~~~~~el~--~~~l~~L~~LL~d~d 113 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPTLLDNFLDEIIA--FQA---DKSIEVRKFVIGFIEEACKRDIELL--LKLIANLNMLLRDEN 113 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGGGGHHHHHG--GGG---CSCHHHHHHHHHHHHHHHHHCGGGH--HHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHH--hcc---CCcHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHcCCC
Confidence 456665433221 22333344455555542 344 6689999999999998888877764 667778888899999
Q ss_pred hhHHHHHHHHHHhhhh--------cCCCc----ccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHH
Q 001345 295 ASVRKSSVLALQNLYE--------VDDNV----PTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLL 352 (1096)
Q Consensus 295 ~~VR~~~L~aL~~Ly~--------~~~~~----~~L~lFt~RFk~RlveMa~D~D~~V~v~AI~Ll~~L~ 352 (1096)
+.|-..++.+...+|. ++... .....++. ||.+|+.|......+|+..||+.+..+.
T Consensus 114 ~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~-lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 114 VNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSA-MAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH-HHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHH-HHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 9999999999999993 23221 23455555 8888888875556677777777666554
No 31
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=92.30 E-value=1.1 Score=50.42 Aligned_cols=130 Identities=16% Similarity=0.159 Sum_probs=88.6
Q ss_pred ChhHHHHHHHHHHHHHhhC-cccccc--chhhhhhhhhcCCC--ChhHHHHHHHHHHhhhhc-CCCcccHHHHHHHHHHH
Q 001345 255 DPNIRMSCIQSLGVWILSY-PSFFLQ--DLYLKYLGWTLNDK--SASVRKSSVLALQNLYEV-DDNVPTLGLFTERFSNR 328 (1096)
Q Consensus 255 ~p~IR~~Ci~eLG~Wi~~y-P~~FL~--d~YLKYlGW~L~Dk--~~~VR~~~L~aL~~Ly~~-~~~~~~L~lFt~RFk~R 328 (1096)
+|.+|..++..|+.-...+ |..+-. +..+..+.-.|.|. ++.||..++++|..+... ++.... ..|..-+-+-
T Consensus 143 ~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~-~~~~~~l~~~ 221 (462)
T 1ibr_B 143 TEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDK-ESERHFIMQV 221 (462)
T ss_dssp CHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHH
Confidence 7899999999999988877 443221 34667778889998 899999999999986421 001000 1122223445
Q ss_pred HhhhcccCchhHHHHHHHHHHHHHhcC--CCCCCChh-hHHhhh----cCCChHHHHHHHHHHHH
Q 001345 329 MIELADDIDVSVAVCAIGLVKQLLRHQ--LLPDDDLG-PLYDLL----IDDPPEIRRAIGELVYD 386 (1096)
Q Consensus 329 lveMa~D~D~~V~v~AI~Ll~~L~~~~--~L~~ed~~-~V~~Lv----fd~~~~Vr~AAg~fv~~ 386 (1096)
+.+...|.|.+|+..+++.+..+.... .+.+ .+. .+..++ -+.++.||..|.+|+..
T Consensus 222 l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~ 285 (462)
T 1ibr_B 222 VCEATQCPDTRVRVAALQNLVKIMSLYYQYMET-YMGPALFAITIEAMKSDIDEVALQGIEFWSN 285 (462)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTT-TTTTTHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 555667899999999999999998762 2221 222 444433 38889999999998653
No 32
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=92.23 E-value=0.58 Score=54.92 Aligned_cols=130 Identities=16% Similarity=0.113 Sum_probs=99.1
Q ss_pred ChhHHHHHHHHHHHHHhh---CccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhh
Q 001345 255 DPNIRMSCIQSLGVWILS---YPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIE 331 (1096)
Q Consensus 255 ~p~IR~~Ci~eLG~Wi~~---yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~Rlve 331 (1096)
+|++|..++..||.-... ++..+++...+..|-.+|.+.+..||..++.+|..|....+.... .......-+.|+.
T Consensus 186 ~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~ 264 (530)
T 1wa5_B 186 SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPD-WSVVSQALPTLAK 264 (530)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCC-HHHHGGGHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCc-HHHHHhHHHHHHH
Confidence 799999999999987754 344567778999999999999999999999999999865421112 2234556778999
Q ss_pred hcccCchhHHHHHHHHHHHHHhcC------CCCCCChhhHHhhhcCCChHHHHHHHHHHH
Q 001345 332 LADDIDVSVAVCAIGLVKQLLRHQ------LLPDDDLGPLYDLLIDDPPEIRRAIGELVY 385 (1096)
Q Consensus 332 Ma~D~D~~V~v~AI~Ll~~L~~~~------~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~ 385 (1096)
+..+.|..|+..|+..|..|.... +++..-+..+..++-+.++.|+.+|...+.
T Consensus 265 lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~ 324 (530)
T 1wa5_B 265 LIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 324 (530)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHH
Confidence 998889999999999999988641 122233456677777788888887776654
No 33
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=91.79 E-value=0.62 Score=48.38 Aligned_cols=111 Identities=17% Similarity=0.215 Sum_probs=89.4
Q ss_pred hHHHHHHHHHhhhceeEeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhh
Q 001345 231 NITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYE 310 (1096)
Q Consensus 231 ~~e~ie~~i~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~ 310 (1096)
+-+.+..+.--+|. -||=-+|.||.----.|+.-|..||..- +.-.|-+|.||.+|+..-|+.+|.-+..+=.
T Consensus 101 ~Pe~v~~vVp~lfa-----nyrigd~kikIn~~yaLeeIaranP~l~--~~v~rdi~smltskd~~Dkl~aLnFi~alGe 173 (253)
T 2db0_A 101 KPELVKSMIPVLFA-----NYRIGDEKTKINVSYALEEIAKANPMLM--ASIVRDFMSMLSSKNREDKLTALNFIEAMGE 173 (253)
T ss_dssp CHHHHHHHHHHHHH-----HSCCCSHHHHHHHHHHHHHHHHHCHHHH--HHHHHHHHHHTSCSSHHHHHHHHHHHHTCCT
T ss_pred CHHHHHhhHHHHHH-----HHhcCCccceecHHHHHHHHHHhChHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 44556666666663 5888899999999999999999999853 5577999999999999999999988887754
Q ss_pred cCCCcccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhc
Q 001345 311 VDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRH 354 (1096)
Q Consensus 311 ~~~~~~~L~lFt~RFk~RlveMa~D~D~~V~v~AI~Ll~~L~~~ 354 (1096)
| +++ ...=|-+|+..+..|.|.-||..|+..|..+-..
T Consensus 174 n-----~~~-yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~ 211 (253)
T 2db0_A 174 N-----SFK-YVNPFLPRIINLLHDGDEIVRASAVEALVHLATL 211 (253)
T ss_dssp T-----THH-HHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTS
T ss_pred c-----Ccc-ccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHc
Confidence 3 222 2333888999999999999999999988777654
No 34
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=91.58 E-value=0.77 Score=49.22 Aligned_cols=107 Identities=12% Similarity=0.169 Sum_probs=84.2
Q ss_pred eccccCCChhHHHHHHHHHHHHHhhCcccccc---chhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCc-ccHHHHH-
Q 001345 248 VHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQ---DLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNV-PTLGLFT- 322 (1096)
Q Consensus 248 vhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~---d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~-~~L~lFt- 322 (1096)
+.|+.|--+.+|.....+|-.|+...+..... +..|.-|.-.|..+++.||.+++..|..+...-... ..+....
T Consensus 110 l~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~ 189 (249)
T 2qk1_A 110 LDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLK 189 (249)
T ss_dssp HHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHH
Confidence 47899999999999999999999876332221 246667777889999999999999999999653221 2344455
Q ss_pred HHHHHHHhhhcccCchhHHHHHHHHHHHHHhc
Q 001345 323 ERFSNRMIELADDIDVSVAVCAIGLVKQLLRH 354 (1096)
Q Consensus 323 ~RFk~RlveMa~D~D~~V~v~AI~Ll~~L~~~ 354 (1096)
..+-+.++.+..|.+.+||..|+..+..|.+.
T Consensus 190 ~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 190 DEVVPIVIQIVNDTQPAIRTIGFESFAILIKI 221 (249)
T ss_dssp TTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 66777888888999999999999999999886
No 35
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=91.46 E-value=0.31 Score=57.25 Aligned_cols=139 Identities=8% Similarity=0.066 Sum_probs=101.0
Q ss_pred eccccCCChhHHHHHHHHHHHHHhhCcc---ccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCC-cccHHH-HH
Q 001345 248 VHRYRDIDPNIRMSCIQSLGVWILSYPS---FFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDN-VPTLGL-FT 322 (1096)
Q Consensus 248 vhRyRDv~p~IR~~Ci~eLG~Wi~~yP~---~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~-~~~L~l-Ft 322 (1096)
+.-..+-++.||..++..||......|. .+++...+..|--+|.+.+..||..++.+|..+...... ...... .-
T Consensus 347 ~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~ 426 (530)
T 1wa5_B 347 RLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVS 426 (530)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 3344566899999999999987765554 355677888888889999999999999999999753211 011222 22
Q ss_pred HHHHHHHhhhcccCchhHHHHHHHHHHHHHhcC-----------------CCCCCChhhHHhhhcCCChHHHHHHHHHHH
Q 001345 323 ERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQ-----------------LLPDDDLGPLYDLLIDDPPEIRRAIGELVY 385 (1096)
Q Consensus 323 ~RFk~RlveMa~D~D~~V~v~AI~Ll~~L~~~~-----------------~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~ 385 (1096)
...-+.|+.+..+.|..|+..|+..|..|...+ +.+..-++.+..|..+.++.|+..|...+.
T Consensus 427 ~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~ 506 (530)
T 1wa5_B 427 QGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIE 506 (530)
T ss_dssp TTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 346678888888889999999999998888742 111222456777888889999888877764
Q ss_pred H
Q 001345 386 D 386 (1096)
Q Consensus 386 ~ 386 (1096)
.
T Consensus 507 ~ 507 (530)
T 1wa5_B 507 T 507 (530)
T ss_dssp H
T ss_pred H
Confidence 3
No 36
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=91.17 E-value=0.76 Score=49.26 Aligned_cols=139 Identities=11% Similarity=0.125 Sum_probs=101.3
Q ss_pred EeccccCCChhHHHHHHHHHHH-HHhhCccccc-cc---hhhhhhhhhc-CCCChhHHHHHHHHHHhhhhcCCCc-ccHH
Q 001345 247 FVHRYRDIDPNIRMSCIQSLGV-WILSYPSFFL-QD---LYLKYLGWTL-NDKSASVRKSSVLALQNLYEVDDNV-PTLG 319 (1096)
Q Consensus 247 FvhRyRDv~p~IR~~Ci~eLG~-Wi~~yP~~FL-~d---~YLKYlGW~L-~Dk~~~VR~~~L~aL~~Ly~~~~~~-~~L~ 319 (1096)
|-.+..+-.+.-|..-+++|+. -+...|..-- .. ..++-|.-.| .|++..||..++++|..|-+ ... +.+.
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~--~l~~~~f~ 98 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICD--KLKTPGFS 98 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH--HHCTTTSC
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH--hccccccc
Confidence 3344567788889999999998 7666665442 22 3455555567 89999999999999999973 223 3555
Q ss_pred -HHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhcC--CCC---CC-ChhhHHhhhcCCChHHHHHHHHHHHHH
Q 001345 320 -LFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQ--LLP---DD-DLGPLYDLLIDDPPEIRRAIGELVYDH 387 (1096)
Q Consensus 320 -lFt~RFk~RlveMa~D~D~~V~v~AI~Ll~~L~~~~--~L~---~e-d~~~V~~Lvfd~~~~Vr~AAg~fv~~~ 387 (1096)
.|...+-+-|++...|+...|+..|...+..+.++- ... .+ =++.+...+=+.++.+|.++..|+..-
T Consensus 99 ~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~ 173 (249)
T 2qk1_A 99 KDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNAS 173 (249)
T ss_dssp HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 788888889999999999999999999999999862 110 11 223455555567999999999998753
No 37
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=91.05 E-value=0.99 Score=50.90 Aligned_cols=133 Identities=11% Similarity=-0.020 Sum_probs=87.2
Q ss_pred ccCCChhHHHHHHHHHHHHHhhCcccccc---chhhhhhhhhcCCCChhHHHHHHHHHHhhhhcC---------------
Q 001345 251 YRDIDPNIRMSCIQSLGVWILSYPSFFLQ---DLYLKYLGWTLNDKSASVRKSSVLALQNLYEVD--------------- 312 (1096)
Q Consensus 251 yRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~---d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~--------------- 312 (1096)
..|.++++|..+++.|+.++..+|..|-. ...+.++--.+.|.+..||..++..+..+-+..
T Consensus 226 ~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 305 (462)
T 1ibr_B 226 TQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGR 305 (462)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSS
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCC
Confidence 46889999999999999999999986542 134445545678999999999999887776431
Q ss_pred ----CCcccHHHHHHHHHHHHhhhcc-------cCchhHHHHHHHHHHHHHhcCCCCCCChhhH----HhhhcCCChHHH
Q 001345 313 ----DNVPTLGLFTERFSNRMIELAD-------DIDVSVAVCAIGLVKQLLRHQLLPDDDLGPL----YDLLIDDPPEIR 377 (1096)
Q Consensus 313 ----~~~~~L~lFt~RFk~RlveMa~-------D~D~~V~v~AI~Ll~~L~~~~~L~~ed~~~V----~~Lvfd~~~~Vr 377 (1096)
.....++.+....-+-++.+.. |.++.++..|..+|..|...- .+.-+..+ ...+-+.+..+|
T Consensus 306 ~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~--~~~~~~~~~~~l~~~l~~~~~~~r 383 (462)
T 1ibr_B 306 PPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC--EDDIVPHVLPFIKEHIKNPDWRYR 383 (462)
T ss_dssp CSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHT--TTTHHHHHHHHHHHHTTCSSHHHH
T ss_pred CccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHhcCCChHHH
Confidence 1111122334455555555442 234678999999888887751 22222222 234447788888
Q ss_pred HHHHHHHH
Q 001345 378 RAIGELVY 385 (1096)
Q Consensus 378 ~AAg~fv~ 385 (1096)
.+|...+-
T Consensus 384 ~aal~~l~ 391 (462)
T 1ibr_B 384 DAAVMAFG 391 (462)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87766654
No 38
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=90.22 E-value=0.92 Score=50.12 Aligned_cols=133 Identities=16% Similarity=0.093 Sum_probs=103.0
Q ss_pred cCCChhHHHHHHHHHHHHHhhCcc---ccccchhhhhhhhhcC-CCChhHHHHHHHHHHhhhhcCCCcccHHHHHH-HHH
Q 001345 252 RDIDPNIRMSCIQSLGVWILSYPS---FFLQDLYLKYLGWTLN-DKSASVRKSSVLALQNLYEVDDNVPTLGLFTE-RFS 326 (1096)
Q Consensus 252 RDv~p~IR~~Ci~eLG~Wi~~yP~---~FL~d~YLKYlGW~L~-Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~-RFk 326 (1096)
..-+|+||..++..||.=....|. .+++..-+.+|--+|. |++..||.+++.+|..|..+. .+....|.+ -.-
T Consensus 92 ~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~--~~~~~~~~~~ggi 169 (296)
T 1xqr_A 92 EAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQ--EAGLLQFLRLDGF 169 (296)
T ss_dssp TCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTHH
T ss_pred cCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCC--cHHHHHHHHCCCH
Confidence 456899999999999987777774 5888888999998887 678999999999999998643 233444543 456
Q ss_pred HHHhhhcccCchhHHHHHHHHHHHHHhcC------CCCCCChhhHHhhhcCCChHHHHHHHHHHHH
Q 001345 327 NRMIELADDIDVSVAVCAIGLVKQLLRHQ------LLPDDDLGPLYDLLIDDPPEIRRAIGELVYD 386 (1096)
Q Consensus 327 ~RlveMa~D~D~~V~v~AI~Ll~~L~~~~------~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~ 386 (1096)
+-|+.+..+.|..|+..|+.+|..|...+ +.+..-+..+..|+-+.++.|+..|...+..
T Consensus 170 ~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~ 235 (296)
T 1xqr_A 170 SVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCS 235 (296)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHH
Confidence 68888888889999999999999987651 2233344567788888888888888877654
No 39
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=89.90 E-value=2.9 Score=44.89 Aligned_cols=139 Identities=11% Similarity=0.111 Sum_probs=91.2
Q ss_pred cccCCChhHHHHHHHHHHHHHhhCccccccch----hhhhhhh---hcCCCChhHHHHHHHHHHhhhhcCCCc----ccH
Q 001345 250 RYRDIDPNIRMSCIQSLGVWILSYPSFFLQDL----YLKYLGW---TLNDKSASVRKSSVLALQNLYEVDDNV----PTL 318 (1096)
Q Consensus 250 RyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~----YLKYlGW---~L~Dk~~~VR~~~L~aL~~Ly~~~~~~----~~L 318 (1096)
|..+-.=..|...+++|..++...|..-..+. |.++.++ .+.|+|..|-..++..|..+...-... ...
T Consensus 17 ~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~ 96 (278)
T 4ffb_C 17 RLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHN 96 (278)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHH
T ss_pred hcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchh
Confidence 44445557899999999999987765433332 4444432 578999999999999999887532111 123
Q ss_pred HHHHHHHHHHHhhhc-ccCchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcCCChHHHHHHHHHHHHHH
Q 001345 319 GLFTERFSNRMIELA-DDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVYDHL 388 (1096)
Q Consensus 319 ~lFt~RFk~RlveMa-~D~D~~V~v~AI~Ll~~L~~~~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~~l 388 (1096)
..+...+-+.|++=+ .|....++..|+..+..+.......+.-.+.+...+=+.+|+++.++..++...+
T Consensus 97 ~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l 167 (278)
T 4ffb_C 97 ITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELM 167 (278)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 344556667777765 6888999999999998887764222222334444444789999999999987644
No 40
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=89.51 E-value=1.1 Score=52.40 Aligned_cols=133 Identities=17% Similarity=0.099 Sum_probs=98.9
Q ss_pred cCCChhHHHHHHHHHHHHHhhCcc---ccccchhhhhhhhhc-CCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHH
Q 001345 252 RDIDPNIRMSCIQSLGVWILSYPS---FFLQDLYLKYLGWTL-NDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSN 327 (1096)
Q Consensus 252 RDv~p~IR~~Ci~eLG~Wi~~yP~---~FL~d~YLKYlGW~L-~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~ 327 (1096)
++-++++|..|+..||.=....|. .+++...+..|-..| .+.+..||..++.+|..|....... .. ......-+
T Consensus 170 ~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~-~~-~~~~~~l~ 247 (528)
T 4b8j_A 170 GSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQP-SF-EQTRPALP 247 (528)
T ss_dssp TCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCC-CH-HHHTTHHH
T ss_pred cCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCC-cH-HHHHHHHH
Confidence 345799999999999987655443 566667888888888 7899999999999999998764222 21 23355667
Q ss_pred HHhhhcccCchhHHHHHHHHHHHHHhcC------CCCCCChhhHHhhhcCCChHHHHHHHHHHHH
Q 001345 328 RMIELADDIDVSVAVCAIGLVKQLLRHQ------LLPDDDLGPLYDLLIDDPPEIRRAIGELVYD 386 (1096)
Q Consensus 328 RlveMa~D~D~~V~v~AI~Ll~~L~~~~------~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~ 386 (1096)
.|+.+..+.|.+|+..|+..|..|.... ++...-+..+..++-+.++.|+..|...+..
T Consensus 248 ~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~n 312 (528)
T 4b8j_A 248 ALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGN 312 (528)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHH
Confidence 8888998999999999999998887541 2222335567777777788888777766543
No 41
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=89.19 E-value=1 Score=51.18 Aligned_cols=95 Identities=21% Similarity=0.275 Sum_probs=76.7
Q ss_pred ccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHh
Q 001345 251 YRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMI 330 (1096)
Q Consensus 251 yRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~Rlv 330 (1096)
..|-.|-||..-+..||.- -....++ .-.+|+--+|.|+++-||..++-+..+||... +.+ .++|-+.+-
T Consensus 113 l~~~N~~iR~lALRtL~~I---~~~~m~~-~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~---pe~---v~~~~~~l~ 182 (355)
T 3tjz_B 113 MTGKEDSYRGPAVRALCQI---TDSTMLQ-AIERYMKQAIVDKVPSVSSSALVSSLHLLKCS---FDV---VKRWVNEAQ 182 (355)
T ss_dssp HHSSCHHHHHHHHHHHHHH---CCTTTHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC---HHH---HHTTHHHHH
T ss_pred cCCCcHhHHHHHHHHHhcC---CCHHHHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC---HHH---HHHHHHHHH
Confidence 3678899999999999954 3333333 35688999999999999999999999999642 222 346777888
Q ss_pred hhcccCchhHHHHHHHHHHHHHhcC
Q 001345 331 ELADDIDVSVAVCAIGLVKQLLRHQ 355 (1096)
Q Consensus 331 eMa~D~D~~V~v~AI~Ll~~L~~~~ 355 (1096)
++..|.++.|...|+.++..|.+++
T Consensus 183 ~ll~d~n~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 183 EAASSDNIMVQYHALGLLYHVRKND 207 (355)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHhcCCCccHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999874
No 42
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=89.12 E-value=48 Score=40.42 Aligned_cols=101 Identities=8% Similarity=0.095 Sum_probs=72.1
Q ss_pred cCC--ChhHHHHHHHHHHHHHhhCcccccc----chhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHH-H
Q 001345 252 RDI--DPNIRMSCIQSLGVWILSYPSFFLQ----DLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTE-R 324 (1096)
Q Consensus 252 RDv--~p~IR~~Ci~eLG~Wi~~yP~~FL~----d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~-R 324 (1096)
.|- ++++|..+++.|+.|+...+..|-. +..+..+.-.+.|.+..+|..+++.|..+.+... ..+..+.. .
T Consensus 189 ~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~--~~~~~~l~~~ 266 (861)
T 2bpt_A 189 QSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYY--TFMKPYMEQA 266 (861)
T ss_dssp STTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHG--GGCHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 465 8999999999999998655544432 2346666677899999999999999998875321 12222222 3
Q ss_pred HHHHHhhhcccCchhHHHHHHHHHHHHHhc
Q 001345 325 FSNRMIELADDIDVSVAVCAIGLVKQLLRH 354 (1096)
Q Consensus 325 Fk~RlveMa~D~D~~V~v~AI~Ll~~L~~~ 354 (1096)
+-+-++....|.|..|+..|++++..+.+.
T Consensus 267 l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~ 296 (861)
T 2bpt_A 267 LYALTIATMKSPNDKVASMTVEFWSTICEE 296 (861)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 333444555799999999999999888765
No 43
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=88.29 E-value=3.7 Score=50.35 Aligned_cols=129 Identities=14% Similarity=0.221 Sum_probs=96.6
Q ss_pred ChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhcc
Q 001345 255 DPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELAD 334 (1096)
Q Consensus 255 ~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlveMa~ 334 (1096)
.+.+|..+...|+.....+|+..+ +..+.++.-.|.|++..+|..++.+|..+.+... ...+..+...+-+.++....
T Consensus 344 ~~~~r~~a~~~L~~l~~~~~~~~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~-~~~~~~~l~~il~~l~~~l~ 421 (861)
T 2bpt_A 344 DWNVSMSAGACLQLFAQNCGNHIL-EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPD-KVQRTYYVHQALPSILNLMN 421 (861)
T ss_dssp CCHHHHHHHHHHHHHHHHHGGGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC-HHHHHHHHHHHHHHHHHGGG
T ss_pred cCcHHHHHHHHHHHHHHHccHhHH-HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHcC
Confidence 468999999999999988886544 4677888888999999999999999999975321 12345566667778888888
Q ss_pred cCchhHHHHHHHHHHHHHhc---CCCCCCChhhHHhhhc---CCChHHHHHHHHHHH
Q 001345 335 DIDVSVAVCAIGLVKQLLRH---QLLPDDDLGPLYDLLI---DDPPEIRRAIGELVY 385 (1096)
Q Consensus 335 D~D~~V~v~AI~Ll~~L~~~---~~L~~ed~~~V~~Lvf---d~~~~Vr~AAg~fv~ 385 (1096)
|.++.||..|+..+..+... .+.+......+...++ .++++||.+|..-+.
T Consensus 422 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~v~~~a~~al~ 478 (861)
T 2bpt_A 422 DQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTII 478 (861)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 99999999999988888775 2334445555555443 344888888877654
No 44
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=88.00 E-value=1.6 Score=50.86 Aligned_cols=133 Identities=17% Similarity=0.180 Sum_probs=99.1
Q ss_pred cCCChhHHHHHHHHHHHHHhhCc--cccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHH-HHHHHHHH
Q 001345 252 RDIDPNIRMSCIQSLGVWILSYP--SFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGL-FTERFSNR 328 (1096)
Q Consensus 252 RDv~p~IR~~Ci~eLG~Wi~~yP--~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~l-Ft~RFk~R 328 (1096)
.+-++.+|..++..|+.-....| ........+..|--+|.+.++.||..++.+|..|-...+ ..... .....-++
T Consensus 213 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~--~~~~~~~~~g~v~~ 290 (528)
T 4b8j_A 213 EHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTN--DKIQAVIEAGVCPR 290 (528)
T ss_dssp TTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCH--HHHHHHHHTTCHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH--HHHHHHHHcCHHHH
Confidence 35689999999999998776543 334457788999999999999999999999999975432 22222 23356779
Q ss_pred HhhhcccCchhHHHHHHHHHHHHHhcC------CCCCCChhhHHhhhcCC-ChHHHHHHHHHHHH
Q 001345 329 MIELADDIDVSVAVCAIGLVKQLLRHQ------LLPDDDLGPLYDLLIDD-PPEIRRAIGELVYD 386 (1096)
Q Consensus 329 lveMa~D~D~~V~v~AI~Ll~~L~~~~------~L~~ed~~~V~~Lvfd~-~~~Vr~AAg~fv~~ 386 (1096)
|+.+..+.+..|+..|+..|..|.... ++...-+..+..++-+. ++.|+++|...+..
T Consensus 291 Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~n 355 (528)
T 4b8j_A 291 LVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISN 355 (528)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 999998899999999999999887641 22333345666777777 88888888776653
No 45
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=87.80 E-value=3.4 Score=50.83 Aligned_cols=131 Identities=19% Similarity=0.138 Sum_probs=95.3
Q ss_pred CCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhh
Q 001345 253 DIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIEL 332 (1096)
Q Consensus 253 Dv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlveM 332 (1096)
|-++.+|..+...|+.....+|+..+. ..+.++.-.|.|++..||..++.+|..+..... ...+..+...+-+.++.+
T Consensus 339 ~~~~~~r~~a~~~l~~l~~~~~~~~~~-~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~-~~~~~~~~~~~l~~l~~~ 416 (876)
T 1qgr_A 339 DDDWNPCKAAGVCLMLLATCCEDDIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE-PSQLKPLVIQAMPTLIEL 416 (876)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHGGGGHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC-HHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHCcHhhHH-HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHH
Confidence 346789999999999988888865543 677788888999999999999999999875321 023445666677778888
Q ss_pred cccCchhHHHHHHHHHHHHHhcC---CCCCCChhhHHhhhc---CCChHHHHHHHHHHH
Q 001345 333 ADDIDVSVAVCAIGLVKQLLRHQ---LLPDDDLGPLYDLLI---DDPPEIRRAIGELVY 385 (1096)
Q Consensus 333 a~D~D~~V~v~AI~Ll~~L~~~~---~L~~ed~~~V~~Lvf---d~~~~Vr~AAg~fv~ 385 (1096)
..|.+..|+..|+..+..+.+.- +........+...++ .+++.||.+|...+.
T Consensus 417 l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~v~~~a~~al~ 475 (876)
T 1qgr_A 417 MKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFS 475 (876)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88999999999999999998861 112233444433333 335888888776654
No 46
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=87.61 E-value=2 Score=52.88 Aligned_cols=132 Identities=11% Similarity=-0.015 Sum_probs=89.1
Q ss_pred cCCChhHHHHHHHHHHHHHhhCcccccc---chhhhhhhhhcCCCChhHHHHHHHHHHhhhhcC----------------
Q 001345 252 RDIDPNIRMSCIQSLGVWILSYPSFFLQ---DLYLKYLGWTLNDKSASVRKSSVLALQNLYEVD---------------- 312 (1096)
Q Consensus 252 RDv~p~IR~~Ci~eLG~Wi~~yP~~FL~---d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~---------------- 312 (1096)
.|-++++|..+++.|+..+..||..|.. ...+.++--.+.|.+..||..++..+..+-+..
T Consensus 227 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~ 306 (876)
T 1qgr_A 227 QCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRP 306 (876)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCC
Confidence 5788999999999999999999987542 234445544567899999999998887775421
Q ss_pred ---CCcccHHHHHHHHHHHHhhhcc-------cCchhHHHHHHHHHHHHHhcCCCCCCChhhH----HhhhcCCChHHHH
Q 001345 313 ---DNVPTLGLFTERFSNRMIELAD-------DIDVSVAVCAIGLVKQLLRHQLLPDDDLGPL----YDLLIDDPPEIRR 378 (1096)
Q Consensus 313 ---~~~~~L~lFt~RFk~RlveMa~-------D~D~~V~v~AI~Ll~~L~~~~~L~~ed~~~V----~~Lvfd~~~~Vr~ 378 (1096)
.....+......+-+-++.+.. |.++.||..|...+..|...- .+.-+..+ ...+.+.++.+|.
T Consensus 307 ~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~--~~~~~~~~l~~l~~~l~~~~~~~r~ 384 (876)
T 1qgr_A 307 PEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC--EDDIVPHVLPFIKEHIKNPDWRYRD 384 (876)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHH--GGGGHHHHHHHHHHHTTCSSHHHHH
T ss_pred ccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHC--cHhhHHHHHHHHHHHccCCChHHHH
Confidence 0111222233445555666552 456789999999988887751 12223333 3445588999999
Q ss_pred HHHHHHH
Q 001345 379 AIGELVY 385 (1096)
Q Consensus 379 AAg~fv~ 385 (1096)
+|...+.
T Consensus 385 ~a~~~l~ 391 (876)
T 1qgr_A 385 AAVMAFG 391 (876)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887654
No 47
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=86.87 E-value=0.56 Score=50.58 Aligned_cols=90 Identities=22% Similarity=0.147 Sum_probs=48.9
Q ss_pred ccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHH
Q 001345 249 HRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNR 328 (1096)
Q Consensus 249 hRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~R 328 (1096)
.=..|-++.+|..-...+ |. . .+.-++.|.++.||..+...+. . +-
T Consensus 129 ~L~~D~d~~VR~~aA~~l-------~~-----~---~l~~l~~D~d~~VR~~aa~~l~---------~----------~l 174 (244)
T 1lrv_A 129 QMAADRDYLVRAYVVQRI-------PP-----G---RLFRFMRDEDRQVRKLVAKRLP---------E----------ES 174 (244)
T ss_dssp GGTTCSSHHHHHHHHHHS-------CG-----G---GGGGTTTCSCHHHHHHHHHHSC---------G----------GG
T ss_pred HHHcCCCHHHHHHHHHhc-------CH-----H---HHHHHHcCCCHHHHHHHHHcCC---------H----------HH
Confidence 335677777776665532 11 1 2234566777777777666410 0 12
Q ss_pred HhhhcccCchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcCCChHHHHHHHHHH
Q 001345 329 MIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELV 384 (1096)
Q Consensus 329 lveMa~D~D~~V~v~AI~Ll~~L~~~~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv 384 (1096)
+..|+.|.|+.|+..|+.-+ . .+.+..|+=|.+..||.+|+.-+
T Consensus 175 l~~ll~D~d~~VR~aaa~~l---------~---~~~L~~Ll~D~d~~VR~~aa~~l 218 (244)
T 1lrv_A 175 LGLMTQDPEPEVRRIVASRL---------R---GDDLLELLHDPDWTVRLAAVEHA 218 (244)
T ss_dssp GGGSTTCSSHHHHHHHHHHC---------C---GGGGGGGGGCSSHHHHHHHHHHS
T ss_pred HHHHHcCCCHHHHHHHHHhC---------C---HHHHHHHHcCCCHHHHHHHHHcC
Confidence 33455667777766666531 1 23455566666666666666544
No 48
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=85.55 E-value=0.73 Score=55.83 Aligned_cols=92 Identities=12% Similarity=0.101 Sum_probs=72.4
Q ss_pred cCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhc-CCCcccHHHHHHHHHHHHh
Q 001345 252 RDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEV-DDNVPTLGLFTERFSNRMI 330 (1096)
Q Consensus 252 RDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~-~~~~~~L~lFt~RFk~Rlv 330 (1096)
.|-.|.||...+..||.-. -|+ .. ..-+..+.-.|.|+++.||.+|+.+|.++|.. ++.. +.|-+++.
T Consensus 117 ~~~n~~vr~lAL~~L~~i~--~~~-~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-------~~~~~~l~ 185 (618)
T 1w63_A 117 NHSTQFVQGLALCTLGCMG--SSE-MC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-------EMFLPATK 185 (618)
T ss_dssp SCSSSHHHHHHHHHHHHHC--CHH-HH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-------GGGGGGTT
T ss_pred CCCCHhHHHHHHHHHHhcC--CHH-HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-------HHHHHHHH
Confidence 4779999999999999643 232 22 23356677778999999999999999999974 3322 25677888
Q ss_pred hhcccCchhHHHHHHHHHHHHHhc
Q 001345 331 ELADDIDVSVAVCAIGLVKQLLRH 354 (1096)
Q Consensus 331 eMa~D~D~~V~v~AI~Ll~~L~~~ 354 (1096)
++..|.|+.|...|+.++..|.+.
T Consensus 186 ~lL~D~d~~V~~~Al~~L~~i~~~ 209 (618)
T 1w63_A 186 NLLNEKNHGVLHTSVVLLTEMCER 209 (618)
T ss_dssp TSTTCCCHHHHHHHHHHHHHHCCS
T ss_pred HHhCCCCHhHHHHHHHHHHHHHHh
Confidence 888999999999999999998654
No 49
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=84.05 E-value=2.5 Score=46.63 Aligned_cols=100 Identities=14% Similarity=0.180 Sum_probs=82.4
Q ss_pred CCChhHHHHHHHHHHHHHhhCcc---ccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHH-HHHHHHH
Q 001345 253 DIDPNIRMSCIQSLGVWILSYPS---FFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLF-TERFSNR 328 (1096)
Q Consensus 253 Dv~p~IR~~Ci~eLG~Wi~~yP~---~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lF-t~RFk~R 328 (1096)
|..+.+|..++-+|+.-...+|. .|.+..-+..|--+|.+.+..||.++..+|..|-... ......+ -..+-++
T Consensus 136 ~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~--~~~~~~vv~~g~i~~ 213 (296)
T 1xqr_A 136 DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH--PEHKGTLCSMGMVQQ 213 (296)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHTTHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC--hHHHHHHHHcCCHHH
Confidence 34689999999999998887765 6888888999999999999999999999999997542 1222222 3356789
Q ss_pred HhhhcccCchhHHHHHHHHHHHHHhc
Q 001345 329 MIELADDIDVSVAVCAIGLVKQLLRH 354 (1096)
Q Consensus 329 lveMa~D~D~~V~v~AI~Ll~~L~~~ 354 (1096)
|++|....|..|+..|...|..|.+.
T Consensus 214 Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 214 LVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 99999888999999999999998876
No 50
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=83.65 E-value=1.4 Score=53.64 Aligned_cols=95 Identities=21% Similarity=0.350 Sum_probs=74.5
Q ss_pred cCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhc--CCCChhHHHHHHHHHHhhhhc-CCCcccHHHHHHHHHHH
Q 001345 252 RDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTL--NDKSASVRKSSVLALQNLYEV-DDNVPTLGLFTERFSNR 328 (1096)
Q Consensus 252 RDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L--~Dk~~~VR~~~L~aL~~Ly~~-~~~~~~L~lFt~RFk~R 328 (1096)
.|-+|-||..-+..||.- .-|+ +-...+..+.-.| .|+++-||..|+-++.++|+. ++..+. +.|-++
T Consensus 121 ~~~n~~ir~lALr~L~~i--~~~e--~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~-----~~~~~~ 191 (621)
T 2vgl_A 121 ASRNPTFMGLALHCIANV--GSRE--MAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPM-----GDWTSR 191 (621)
T ss_dssp HSCCHHHHHHHHHHHHHH--CCHH--HHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCC-----CSCHHH
T ss_pred CCCCHHHHHHHHHHhhcc--CCHH--HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCc-----hhHHHH
Confidence 467899999999999964 2344 2245667778888 999999999999999999974 333321 235567
Q ss_pred HhhhcccCchhHHHHHHHHHHHHHhcC
Q 001345 329 MIELADDIDVSVAVCAIGLVKQLLRHQ 355 (1096)
Q Consensus 329 lveMa~D~D~~V~v~AI~Ll~~L~~~~ 355 (1096)
+.+|..|.|+.|...|+.++..|.+..
T Consensus 192 l~~lL~d~d~~V~~~a~~~l~~i~~~~ 218 (621)
T 2vgl_A 192 VVHLLNDQHLGVVTAATSLITTLAQKN 218 (621)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCCccHHHHHHHHHHHHHHhC
Confidence 778889999999999999999998763
No 51
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=83.21 E-value=4.2 Score=47.83 Aligned_cols=136 Identities=11% Similarity=0.130 Sum_probs=102.4
Q ss_pred ccCCChhHHHHHHHHHHHHHhhCcc---ccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHH
Q 001345 251 YRDIDPNIRMSCIQSLGVWILSYPS---FFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSN 327 (1096)
Q Consensus 251 yRDv~p~IR~~Ci~eLG~Wi~~yP~---~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~ 327 (1096)
-++-++.++..|+..||.-....+. ..++..-+.+|--+|.+++..||.++..+|..|-...... .-...-...-+
T Consensus 302 L~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~-~~~v~~~g~i~ 380 (529)
T 3tpo_A 302 LGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQ-IQQVVNHGLVP 380 (529)
T ss_dssp HTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHH-HHHHHHTTHHH
T ss_pred hcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHH-HHHHHhcCcHH
Confidence 3567899999999999987654443 4567788899999999999999999999999997543211 11122334667
Q ss_pred HHhhhcccCchhHHHHHHHHHHHHHhcC-------CCCCCChhhHHhhhcCCChHHHHHHHHHHHHH
Q 001345 328 RMIELADDIDVSVAVCAIGLVKQLLRHQ-------LLPDDDLGPLYDLLIDDPPEIRRAIGELVYDH 387 (1096)
Q Consensus 328 RlveMa~D~D~~V~v~AI~Ll~~L~~~~-------~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~~ 387 (1096)
.|+.+..+.+..|+..|+..|..+...+ +.+..-+..+..|+-+.++.|+..+.+.+..-
T Consensus 381 ~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~ni 447 (529)
T 3tpo_A 381 FLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 447 (529)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 8899998899999999999888776643 22333456788899999999999888876653
No 52
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=82.98 E-value=3.7 Score=48.22 Aligned_cols=135 Identities=11% Similarity=0.125 Sum_probs=101.4
Q ss_pred cCCChhHHHHHHHHHHHHHhhCcc---ccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHH
Q 001345 252 RDIDPNIRMSCIQSLGVWILSYPS---FFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNR 328 (1096)
Q Consensus 252 RDv~p~IR~~Ci~eLG~Wi~~yP~---~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~R 328 (1096)
++-++.++..|+..||.-....+. ..++..-+..|--+|.+++..||..+..+|..|-..... ..-..+-...-+.
T Consensus 284 ~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~-~~~~v~~~g~i~~ 362 (510)
T 3ul1_B 284 GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQD-QIQQVVNHGLVPF 362 (510)
T ss_dssp TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTHHHH
T ss_pred cCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHH-HHHHHHhcCCHHH
Confidence 467889999999999976544433 356777888888899999999999999999999754321 1111233346678
Q ss_pred HhhhcccCchhHHHHHHHHHHHHHhcC-------CCCCCChhhHHhhhcCCChHHHHHHHHHHHHH
Q 001345 329 MIELADDIDVSVAVCAIGLVKQLLRHQ-------LLPDDDLGPLYDLLIDDPPEIRRAIGELVYDH 387 (1096)
Q Consensus 329 lveMa~D~D~~V~v~AI~Ll~~L~~~~-------~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~~ 387 (1096)
|+.+..+.|..|+.+|...|..+...+ +.+..-+..+..|+-+.++.|+..+.+.+..-
T Consensus 363 Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~ni 428 (510)
T 3ul1_B 363 LVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 428 (510)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 999998999999999999888877643 22333456888999999999999998877653
No 53
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=82.63 E-value=3 Score=54.19 Aligned_cols=128 Identities=21% Similarity=0.182 Sum_probs=90.3
Q ss_pred cCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhh
Q 001345 252 RDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIE 331 (1096)
Q Consensus 252 RDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~Rlve 331 (1096)
-|.+..+|..+-+.||.-+...|.. ++-.|--.|.|.++.+|..++.+|..+.... .+........|-+.++.
T Consensus 941 ~~~~~~~r~~~a~~lg~l~~~~~~~-----l~p~l~~~l~~~~~~~R~~~~~~l~~~~~~~--~~~~~~~l~~~~~~ll~ 1013 (1230)
T 1u6g_C 941 ECAEEGTRNVVAECLGKLTLIDPET-----LLPRLKGYLISGSSYARSSVVTAVKFTISDH--PQPIDPLLKNCIGDFLK 1013 (1230)
T ss_dssp CCSSTTHHHHHHHHHHHHHHSSGGG-----THHHHTTTSSSSCHHHHHHHHHHTGGGCCSS--CCTHHHHHHHHSTTTHH
T ss_pred cCcchhhHHHHHHHHhhhhccChHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHccC--chhhHHHHHHHHHHHHH
Confidence 3567889988888888888888754 4445555678999999999999988887542 23344555556667777
Q ss_pred hcccCchhHHHHHHHHHHHHHhcC-CCCCCChhhHHhhhcC----------------------CChHHHHHHHHHHHH
Q 001345 332 LADDIDVSVAVCAIGLVKQLLRHQ-LLPDDDLGPLYDLLID----------------------DPPEIRRAIGELVYD 386 (1096)
Q Consensus 332 Ma~D~D~~V~v~AI~Ll~~L~~~~-~L~~ed~~~V~~Lvfd----------------------~~~~Vr~AAg~fv~~ 386 (1096)
+..|.|.+||..|+..+..+.+++ -+-.+.+..+...+|. ..-.+|++|-+.++.
T Consensus 1014 ~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ 1091 (1230)
T 1u6g_C 1014 TLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYT 1091 (1230)
T ss_dssp HHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHhcccHHhheeeccCCcccccCCcHHHHHHHHHHHHH
Confidence 778999999999999999888763 2222344555555542 223677777777765
No 54
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=81.91 E-value=3.8 Score=48.06 Aligned_cols=143 Identities=10% Similarity=0.109 Sum_probs=103.7
Q ss_pred eeEeccccCCChhHHHHHHHHHHHHHhhCcc---ccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHH
Q 001345 245 GLFVHRYRDIDPNIRMSCIQSLGVWILSYPS---FFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLF 321 (1096)
Q Consensus 245 ~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~---~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lF 321 (1096)
.+++.=.++-.++||..+.-.|+.-....+. ...+...+..+-.+|.+.+..||.+|..+|..|-...+. ..+..+
T Consensus 319 ~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~-~~~~~L 397 (510)
T 3ul1_B 319 AVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTV-EQIVYL 397 (510)
T ss_dssp GGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCH-HHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCH-HHHHHH
Confidence 4566777888999999999988876544443 455777888999999999999999999999999753221 122222
Q ss_pred -HHHHHHHHhhhcccCchhHHHHHHHHHHHHHhcC-CCC-----------CCChhhHHhhhcCCChHHHHHHHHHHHHHH
Q 001345 322 -TERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQ-LLP-----------DDDLGPLYDLLIDDPPEIRRAIGELVYDHL 388 (1096)
Q Consensus 322 -t~RFk~RlveMa~D~D~~V~v~AI~Ll~~L~~~~-~L~-----------~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~~l 388 (1096)
-...-+-|++|....|..|...++..|..|++.+ -+. -.-++.|-.|..+++..|++.|..++.. +
T Consensus 398 ~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~-y 476 (510)
T 3ul1_B 398 VHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEK-Y 476 (510)
T ss_dssp HHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHH-H
T ss_pred HHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHH-H
Confidence 2234456788888899999999999888888752 111 1224567778889999999998888743 4
Q ss_pred H
Q 001345 389 I 389 (1096)
Q Consensus 389 ~ 389 (1096)
|
T Consensus 477 f 477 (510)
T 3ul1_B 477 F 477 (510)
T ss_dssp C
T ss_pred C
Confidence 4
No 55
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=81.35 E-value=3.7 Score=48.35 Aligned_cols=143 Identities=10% Similarity=0.114 Sum_probs=103.3
Q ss_pred eEeccccCCChhHHHHHHHHHHHHHhhCcc---ccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHH
Q 001345 246 LFVHRYRDIDPNIRMSCIQSLGVWILSYPS---FFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFT 322 (1096)
Q Consensus 246 VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~---~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt 322 (1096)
++++=.++-.++||..++-.|+.=....|. ...+...+..+-.+|.+.+..||.++..+|..|-...+. ..+..+.
T Consensus 339 ~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~-~~~~~l~ 417 (529)
T 3tpo_A 339 VFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTV-EQIVYLV 417 (529)
T ss_dssp GHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH-HHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCH-HHHHHHH
Confidence 445556678899999999988875544443 356777888999999999999999999999999753221 1222222
Q ss_pred -HHHHHHHhhhcccCchhHHHHHHHHHHHHHhcC-C----------C-CCCChhhHHhhhcCCChHHHHHHHHHHHHHHH
Q 001345 323 -ERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQ-L----------L-PDDDLGPLYDLLIDDPPEIRRAIGELVYDHLI 389 (1096)
Q Consensus 323 -~RFk~RlveMa~D~D~~V~v~AI~Ll~~L~~~~-~----------L-~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~~l~ 389 (1096)
...-+-|++|....|..|...++..|..|++.+ - + +-.-++.|-.|..+++..|++.|..++- ++|
T Consensus 418 ~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie-~yf 496 (529)
T 3tpo_A 418 HCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE-KYF 496 (529)
T ss_dssp HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHH-HHC
T ss_pred HCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHH-HHC
Confidence 224456888888899999999999888888642 1 1 1223567778888999999999988864 445
Q ss_pred H
Q 001345 390 A 390 (1096)
Q Consensus 390 ~ 390 (1096)
.
T Consensus 497 ~ 497 (529)
T 3tpo_A 497 S 497 (529)
T ss_dssp -
T ss_pred C
Confidence 3
No 56
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=80.97 E-value=2.4 Score=48.85 Aligned_cols=130 Identities=16% Similarity=0.085 Sum_probs=84.4
Q ss_pred ChhHHHHHHHHHHHHHhhCcc------ccccchhhhhhhhhcCCCC-hhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHH
Q 001345 255 DPNIRMSCIQSLGVWILSYPS------FFLQDLYLKYLGWTLNDKS-ASVRKSSVLALQNLYEVDDNVPTLGLFTERFSN 327 (1096)
Q Consensus 255 ~p~IR~~Ci~eLG~Wi~~yP~------~FL~d~YLKYlGW~L~Dk~-~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~ 327 (1096)
.+++|..++..|+.-....|+ .+.+...+..|--+|.+.+ ..||..++.+|..+-..+++.. ...-..+-+
T Consensus 323 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~--~~~~~~~i~ 400 (529)
T 1jdh_A 323 REDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHA--PLREQGAIP 400 (529)
T ss_dssp CHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHH--HHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhH--HHHHcCCHH
Confidence 489999999999987655454 5666677888888899887 5999999999999986554432 122234567
Q ss_pred HHhhhcccCchhHHHHHH----------------------HHHHHHHhc-----CCCCCCChhhHHhhhcCCChHHHHHH
Q 001345 328 RMIELADDIDVSVAVCAI----------------------GLVKQLLRH-----QLLPDDDLGPLYDLLIDDPPEIRRAI 380 (1096)
Q Consensus 328 RlveMa~D~D~~V~v~AI----------------------~Ll~~L~~~-----~~L~~ed~~~V~~Lvfd~~~~Vr~AA 380 (1096)
.|+++..+.+.+|+..|+ ..+..|... .+.+..-+..+..++.+.++.|+++|
T Consensus 401 ~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a 480 (529)
T 1jdh_A 401 RLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVA 480 (529)
T ss_dssp HHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHH
Confidence 788887777777765444 333332211 01112223467777778888888877
Q ss_pred HHHHHH
Q 001345 381 GELVYD 386 (1096)
Q Consensus 381 g~fv~~ 386 (1096)
+..+..
T Consensus 481 ~~~l~~ 486 (529)
T 1jdh_A 481 AGVLCE 486 (529)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766543
No 57
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=80.21 E-value=4.3 Score=48.95 Aligned_cols=132 Identities=15% Similarity=0.106 Sum_probs=94.3
Q ss_pred CCChhHHHHHHHHHHHHHhhCccc--cc-cchhhhhhhhhcCC-CChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHH
Q 001345 253 DIDPNIRMSCIQSLGVWILSYPSF--FL-QDLYLKYLGWTLND-KSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNR 328 (1096)
Q Consensus 253 Dv~p~IR~~Ci~eLG~Wi~~yP~~--FL-~d~YLKYlGW~L~D-k~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~R 328 (1096)
+-+|.+|..|+..|+......+.. .+ ....+..|--.|.+ .++.+|..++.+|..|-..+++ +...+....-+.
T Consensus 25 ~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~--~~~i~~~g~i~~ 102 (644)
T 2z6h_A 25 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG--LLAIFKSGGIPA 102 (644)
T ss_dssp CSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHH--HHHHHTTTHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhh--HHHHHHcCCHHH
Confidence 568999999999999887665432 22 33566666666665 5899999999999988765432 222233345678
Q ss_pred HhhhcccCchhHHHHHHHHHHHHHhcC------CCCCCChhhHHhhhcCCChHHHHHHHHHHHH
Q 001345 329 MIELADDIDVSVAVCAIGLVKQLLRHQ------LLPDDDLGPLYDLLIDDPPEIRRAIGELVYD 386 (1096)
Q Consensus 329 lveMa~D~D~~V~v~AI~Ll~~L~~~~------~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~ 386 (1096)
|+++..+.|..|+..|+..|..|.... +....-+..+..++-+.++.++.++...+..
T Consensus 103 Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ 166 (644)
T 2z6h_A 103 LVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI 166 (644)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHH
Confidence 899998889999999999999997652 1122334566777778888888777766543
No 58
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=78.98 E-value=25 Score=38.29 Aligned_cols=144 Identities=11% Similarity=0.137 Sum_probs=101.9
Q ss_pred HHHHHHHhhhceeEeccccCCChhHHHHHHHHHHHHHhhCcc--cccc----chhhhhhhhhcCCCChhHHHHHHHHHHh
Q 001345 234 DLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPS--FFLQ----DLYLKYLGWTLNDKSASVRKSSVLALQN 307 (1096)
Q Consensus 234 ~ie~~i~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~--~FL~----d~YLKYlGW~L~Dk~~~VR~~~L~aL~~ 307 (1096)
.+...++-+|+-+ .-|.-|..+.+=.-|++.|..-+...-+ +.+. ...|-||--=|-|....||..+-..|..
T Consensus 80 ~~~~~lDll~kw~-~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~ 158 (266)
T 2of3_A 80 SLLSNSDLLLKWC-TLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNV 158 (266)
T ss_dssp HHHHTHHHHHHHH-HHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 3333344444421 3377799999999999999887655433 2222 5677888888899999999998887777
Q ss_pred hhhcCCCcccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhc-CCCCCCCh---hhHHhhhcCCChHHHHHHHHH
Q 001345 308 LYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRH-QLLPDDDL---GPLYDLLIDDPPEIRRAIGEL 383 (1096)
Q Consensus 308 Ly~~~~~~~~L~lFt~RFk~RlveMa~D~D~~V~v~AI~Ll~~L~~~-~~L~~ed~---~~V~~Lvfd~~~~Vr~AAg~f 383 (1096)
++.. .+. +++-+++++-...+...++++++..+..+... |+=...-+ ..|..++=|.+..||.||-.-
T Consensus 159 l~~v---~~~-----~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~~~~l~~~~~ia~ll~D~d~~VR~aAl~~ 230 (266)
T 2of3_A 159 LSDV---VGP-----LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINV 230 (266)
T ss_dssp HHHH---HCH-----HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGGGGGGCHHHHHGGGGGCSSHHHHHHHHHH
T ss_pred HHHH---CCH-----HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHcCCCHHHHHHHHHH
Confidence 7642 111 12334677755789999999999999888875 76444455 677888889999999999876
Q ss_pred HHH
Q 001345 384 VYD 386 (1096)
Q Consensus 384 v~~ 386 (1096)
+.+
T Consensus 231 lve 233 (266)
T 2of3_A 231 LVA 233 (266)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 59
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=78.85 E-value=4.3 Score=49.06 Aligned_cols=93 Identities=13% Similarity=0.070 Sum_probs=73.6
Q ss_pred cCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhh
Q 001345 252 RDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIE 331 (1096)
Q Consensus 252 RDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~Rlve 331 (1096)
.+-+|+||..++..|+.-...+|..|-. |+.-+--.|+|.+..||..++..|..+-.. +++..+ . +.|++
T Consensus 323 ~~~d~~vr~~aL~~L~~i~~~~p~~~~~--~~~~i~~~l~d~d~~Ir~~alelL~~l~~~-~nv~~i---v----~eL~~ 392 (618)
T 1w63_A 323 LNNDKNIRYVALTSLLKTVQTDHNAVQR--HRSTIVDCLKDLDVSIKRRAMELSFALVNG-NNIRGM---M----KELLY 392 (618)
T ss_dssp TCSSTTTHHHHHHHHHHHHHHHHHHHGG--GHHHHHHGGGSSCHHHHHHHHHHHHHHCCS-SSTHHH---H----HHHHH
T ss_pred hCCCCchHHHHHHHHHHHHhhCHHHHHH--HHHHHHHHccCCChhHHHHHHHHHHHHccc-ccHHHH---H----HHHHH
Confidence 4678999999999999999999998754 777888889999999999999999998754 333222 1 23444
Q ss_pred hcccCchhHHHHHHHHHHHHHhc
Q 001345 332 LADDIDVSVAVCAIGLVKQLLRH 354 (1096)
Q Consensus 332 Ma~D~D~~V~v~AI~Ll~~L~~~ 354 (1096)
...+.|.+++..++..+..+-..
T Consensus 393 ~l~~~d~e~r~~~v~~I~~la~k 415 (618)
T 1w63_A 393 FLDSCEPEFKADCASGIFLAAEK 415 (618)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHS
T ss_pred HHHhCCHHHHHHHHHHHHHHHHH
Confidence 44568899999999988888664
No 60
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=78.69 E-value=3.6 Score=47.37 Aligned_cols=131 Identities=15% Similarity=0.111 Sum_probs=93.8
Q ss_pred CCChhHHHHHHHHHHHHHhhCccc--cc-cchhhhhhhhhcC-CCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHH
Q 001345 253 DIDPNIRMSCIQSLGVWILSYPSF--FL-QDLYLKYLGWTLN-DKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNR 328 (1096)
Q Consensus 253 Dv~p~IR~~Ci~eLG~Wi~~yP~~--FL-~d~YLKYlGW~L~-Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~R 328 (1096)
+-+|.+|..++..|+......+.. .+ ....+..+--.|. +.++.+|..++.+|..|-..+++ +-..+....-+.
T Consensus 28 ~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~--~~~i~~~g~i~~ 105 (529)
T 1jdh_A 28 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG--LLAIFKSGGIPA 105 (529)
T ss_dssp CSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHH--HHHHHHTTHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchh--HHHHHHcCCHHH
Confidence 568999999999999876544321 22 3456777766675 45899999999999999765442 222333456678
Q ss_pred HhhhcccCchhHHHHHHHHHHHHHhcC------CCCCCChhhHHhhhcCCChHHHHHHHHHHH
Q 001345 329 MIELADDIDVSVAVCAIGLVKQLLRHQ------LLPDDDLGPLYDLLIDDPPEIRRAIGELVY 385 (1096)
Q Consensus 329 lveMa~D~D~~V~v~AI~Ll~~L~~~~------~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~ 385 (1096)
|+++..+.|..|+..|+..|..|.... +.+..-+..+..++-+.++.++..+...+.
T Consensus 106 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~ 168 (529)
T 1jdh_A 106 LVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 168 (529)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 899998889999999999999997752 111223456677777888888887766554
No 61
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=76.84 E-value=1.3e+02 Score=38.40 Aligned_cols=130 Identities=12% Similarity=0.076 Sum_probs=76.0
Q ss_pred ChhHHHHHHHHHHHHHhhCccc-cccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcC--CC----cccH-HH---HHH
Q 001345 255 DPNIRMSCIQSLGVWILSYPSF-FLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVD--DN----VPTL-GL---FTE 323 (1096)
Q Consensus 255 ~p~IR~~Ci~eLG~Wi~~yP~~-FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~--~~----~~~L-~l---Ft~ 323 (1096)
.+++|..+++.++.|+.-.|.. ++++..+.++.-.+. .++++|..++..|..+.... +. ..++ .. ..+
T Consensus 208 ~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~ 286 (1049)
T 3m1i_C 208 SSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFM-TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQ 286 (1049)
T ss_dssp CHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHH
Confidence 5889999999999998877643 456666665552221 27999999999999998762 21 0111 11 112
Q ss_pred HHHH-----------HHhhhcccCchhHHHHHHHHHHHHHhc--CCCCC-C----ChhhHHhh----hcCCChHHHHHHH
Q 001345 324 RFSN-----------RMIELADDIDVSVAVCAIGLVKQLLRH--QLLPD-D----DLGPLYDL----LIDDPPEIRRAIG 381 (1096)
Q Consensus 324 RFk~-----------RlveMa~D~D~~V~v~AI~Ll~~L~~~--~~L~~-e----d~~~V~~L----vfd~~~~Vr~AAg 381 (1096)
.++. ++. .+.|.|.++.....+++..+.+. .+++. . .+..+..+ ....+..|+..+-
T Consensus 287 ~l~~si~p~~~~l~~~~~-~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~l 365 (1049)
T 3m1i_C 287 QIATSVMPVTADLKATYA-NANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTL 365 (1049)
T ss_dssp HHHHHTCCTTSCHHHHHH-HTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHhhCCCcccHHHHhc-cCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 1111 111 13466777766666666665543 22211 1 12223333 3356778888888
Q ss_pred HHHHH
Q 001345 382 ELVYD 386 (1096)
Q Consensus 382 ~fv~~ 386 (1096)
+|...
T Consensus 366 efw~~ 370 (1049)
T 3m1i_C 366 DYWHN 370 (1049)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88653
No 62
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=75.81 E-value=3.8 Score=44.07 Aligned_cols=93 Identities=24% Similarity=0.278 Sum_probs=62.5
Q ss_pred eEeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHH
Q 001345 246 LFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERF 325 (1096)
Q Consensus 246 VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RF 325 (1096)
.+..--.|-++.+|......| |. .. +--+++|+++.||..+...+ +
T Consensus 102 ~L~~ll~D~d~~VR~~aA~~l-------~~-----~~---L~~L~~D~d~~VR~~aA~~l------~------------- 147 (244)
T 1lrv_A 102 QLSALMFDEDREVRITVADRL-------PL-----EQ---LEQMAADRDYLVRAYVVQRI------P------------- 147 (244)
T ss_dssp GGGGTTTCSCHHHHHHHHHHS-------CT-----GG---GGGGTTCSSHHHHHHHHHHS------C-------------
T ss_pred HHHHHHcCCCHHHHHHHHHhC-------CH-----HH---HHHHHcCCCHHHHHHHHHhc------C-------------
Confidence 455667788899998877743 21 22 33448899999999888742 1
Q ss_pred HHHHhhhcccCchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcCCChHHHHHHHHHH
Q 001345 326 SNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELV 384 (1096)
Q Consensus 326 k~RlveMa~D~D~~V~v~AI~Ll~~L~~~~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv 384 (1096)
.+-+..++.|.|..||..+++- +.+ .-+..++-|.++.||.+|+.-+
T Consensus 148 ~~~l~~l~~D~d~~VR~~aa~~---------l~~---~ll~~ll~D~d~~VR~aaa~~l 194 (244)
T 1lrv_A 148 PGRLFRFMRDEDRQVRKLVAKR---------LPE---ESLGLMTQDPEPEVRRIVASRL 194 (244)
T ss_dssp GGGGGGTTTCSCHHHHHHHHHH---------SCG---GGGGGSTTCSSHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCHHHHHHHHHc---------CCH---HHHHHHHcCCCHHHHHHHHHhC
Confidence 0123456679999999888874 221 2344567788999999988764
No 63
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=72.78 E-value=9.6 Score=45.85 Aligned_cols=133 Identities=15% Similarity=0.031 Sum_probs=93.4
Q ss_pred cCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcC-CCcccHHHHHHHHHHHHh
Q 001345 252 RDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVD-DNVPTLGLFTERFSNRMI 330 (1096)
Q Consensus 252 RDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~-~~~~~L~lFt~RFk~Rlv 330 (1096)
++-++.+|..|+..|+.-....|........+..|--+|.+.++.||..+..+|..|-... ++... ..-..--++|+
T Consensus 234 ~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~--v~~~g~v~~Lv 311 (644)
T 2z6h_A 234 TDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMM--VCQVGGIEALV 311 (644)
T ss_dssp TCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHH--HHHTTHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHH--HHHcCCHHHHH
Confidence 4557999999999999877666655445578888888999999999999999999997643 11111 12223456888
Q ss_pred hhccc-Cc-hhHHHHHHHHHHHHHhcC---------CCCCCChhhHHhhhcCCC-hHHHHHHHHHHHH
Q 001345 331 ELADD-ID-VSVAVCAIGLVKQLLRHQ---------LLPDDDLGPLYDLLIDDP-PEIRRAIGELVYD 386 (1096)
Q Consensus 331 eMa~D-~D-~~V~v~AI~Ll~~L~~~~---------~L~~ed~~~V~~Lvfd~~-~~Vr~AAg~fv~~ 386 (1096)
++..+ .+ .+|+..|+..|..|.... ++...-+..+.+++-+.+ +.|+++|...+.+
T Consensus 312 ~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 379 (644)
T 2z6h_A 312 RTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRN 379 (644)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHH
T ss_pred HHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHH
Confidence 88854 33 699999999999886431 112223445666666654 6888888877654
No 64
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=71.74 E-value=2.3e+02 Score=36.37 Aligned_cols=74 Identities=12% Similarity=0.227 Sum_probs=55.4
Q ss_pred HHhHHHHHHHHHhhhceeEeccccCCChhHHHHHHHHHHHHHhhCcc-ccccchhhhhhh-hhcCCCChhHHHHHHHHHH
Q 001345 229 HKNITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPS-FFLQDLYLKYLG-WTLNDKSASVRKSSVLALQ 306 (1096)
Q Consensus 229 ~~~~e~ie~~i~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~-~FL~d~YLKYlG-W~L~Dk~~~VR~~~L~aL~ 306 (1096)
..+...+-+++..+... ...|++...|++.|+.|+.--|- .+.++..+..+. -.|+ +++.|..|+..|.
T Consensus 189 ~~~~~~I~~ll~~iL~~-------~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~ 259 (1023)
T 4hat_C 189 SKEFEQIFKLCFQVLEQ-------GASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLT 259 (1023)
T ss_dssp HHHHHHHHHHHHHHHHH-------CSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHH
Confidence 33455666666666653 35788999999999999987664 456777777776 6664 6789999999999
Q ss_pred hhhhc
Q 001345 307 NLYEV 311 (1096)
Q Consensus 307 ~Ly~~ 311 (1096)
.+.+.
T Consensus 260 eIv~~ 264 (1023)
T 4hat_C 260 EVSNL 264 (1023)
T ss_dssp HHHTS
T ss_pred HHHcc
Confidence 99863
No 65
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=71.06 E-value=17 Score=42.02 Aligned_cols=129 Identities=16% Similarity=0.119 Sum_probs=95.4
Q ss_pred ChhHHHHHHHHHHHHHhhCcc--------ccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHH
Q 001345 255 DPNIRMSCIQSLGVWILSYPS--------FFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFS 326 (1096)
Q Consensus 255 ~p~IR~~Ci~eLG~Wi~~yP~--------~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk 326 (1096)
.|+++..+.-.|+.-....+. .+.+..-+..|--+|.+.+..||.++..+|..|-.++.+... .....-
T Consensus 297 ~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~---i~~~~i 373 (457)
T 1xm9_A 297 KDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRV---MGNQVF 373 (457)
T ss_dssp CHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHH---HHHHTH
T ss_pred CHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHH---HHHhhh
Confidence 478888888888765442211 234566788999999999999999999999999876544333 334567
Q ss_pred HHHhhhcccCc------hhHHHHHHHHHHHHHhcC------CCCCCChhhHHhhhcCC-ChHHHHHHHHHHHH
Q 001345 327 NRMIELADDID------VSVAVCAIGLVKQLLRHQ------LLPDDDLGPLYDLLIDD-PPEIRRAIGELVYD 386 (1096)
Q Consensus 327 ~RlveMa~D~D------~~V~v~AI~Ll~~L~~~~------~L~~ed~~~V~~Lvfd~-~~~Vr~AAg~fv~~ 386 (1096)
+.||++....| .+|...|+..+..|...+ +.+..-++.+..|.-+. ++.|+++|...+..
T Consensus 374 ~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~ 446 (457)
T 1xm9_A 374 PEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSD 446 (457)
T ss_dssp HHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 78999985543 468888888888887653 33444566888888888 89999999988764
No 66
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=70.82 E-value=6.4 Score=48.94 Aligned_cols=131 Identities=15% Similarity=0.099 Sum_probs=93.7
Q ss_pred CCChhHHHHHHHHHHHHHhhCcc--ccc-cchhhhhhhhhcC-CCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHH
Q 001345 253 DIDPNIRMSCIQSLGVWILSYPS--FFL-QDLYLKYLGWTLN-DKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNR 328 (1096)
Q Consensus 253 Dv~p~IR~~Ci~eLG~Wi~~yP~--~FL-~d~YLKYlGW~L~-Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~R 328 (1096)
+-++.+|..++..|+......+. ... .+..+..|-..|. +.++.+|..++.+|..|-..+++... .+....-+.
T Consensus 161 ~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~--i~~~g~I~~ 238 (780)
T 2z6g_A 161 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLA--IFKSGGIPA 238 (780)
T ss_dssp CSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHH--HHHTTHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHH--HHHcCCHHH
Confidence 45899999999999987653321 222 3467888888886 45999999999999998765443222 223345678
Q ss_pred HhhhcccCchhHHHHHHHHHHHHHhcC------CCCCCChhhHHhhhcCCChHHHHHHHHHHH
Q 001345 329 MIELADDIDVSVAVCAIGLVKQLLRHQ------LLPDDDLGPLYDLLIDDPPEIRRAIGELVY 385 (1096)
Q Consensus 329 lveMa~D~D~~V~v~AI~Ll~~L~~~~------~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~ 385 (1096)
|+++..+.+..|+..|+..|..|.... +....-+..+..++-+.+..++..|...+.
T Consensus 239 Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~ 301 (780)
T 2z6g_A 239 LVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 301 (780)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 999998889999999999999997652 112223446667777888888777766654
No 67
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=66.51 E-value=6.1 Score=49.16 Aligned_cols=134 Identities=13% Similarity=0.190 Sum_probs=87.4
Q ss_pred EeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHH-HHHH
Q 001345 247 FVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLF-TERF 325 (1096)
Q Consensus 247 FvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lF-t~RF 325 (1096)
+|.+-++-++++|...+..|..= -..++...-+..|--+|.+.++.||..++.+|..|....+.. .... ....
T Consensus 120 lv~~L~~~~~~~r~~a~~~l~~~----~~~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~--~~i~~~~~~ 193 (780)
T 2z6g_A 120 NVQRLAEPSQMLKHAVVNLINYQ----DDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR--HAIMRSPQM 193 (780)
T ss_dssp ------CCSCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHH--HHHTTCHHH
T ss_pred HHHHhcCccHHHHHHHHHHHHhh----hHHHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhH--HHHHhccCh
Confidence 55555666677777666666521 112333455666666788999999999999999998654221 1111 1245
Q ss_pred HHHHhhhc-ccCchhHHHHHHHHHHHHHhcC-----CCCCCChhhHHhhhcCCChHHHHHHHHHHHH
Q 001345 326 SNRMIELA-DDIDVSVAVCAIGLVKQLLRHQ-----LLPDDDLGPLYDLLIDDPPEIRRAIGELVYD 386 (1096)
Q Consensus 326 k~RlveMa-~D~D~~V~v~AI~Ll~~L~~~~-----~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~ 386 (1096)
-+.|+++. .+.|.+|+..|+..|..|.... +....-+..+..++-+.++.++..|+..+..
T Consensus 194 i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~n 260 (780)
T 2z6g_A 194 VSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHN 260 (780)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 66777777 4569999999999998876541 1222345577788888899999999988765
No 68
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=65.04 E-value=31 Score=42.08 Aligned_cols=131 Identities=21% Similarity=0.226 Sum_probs=98.7
Q ss_pred ChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCC-CChhHHHHHHHHHHhhhhcCCCc----------ccHH-HHH
Q 001345 255 DPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLND-KSASVRKSSVLALQNLYEVDDNV----------PTLG-LFT 322 (1096)
Q Consensus 255 ~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~D-k~~~VR~~~L~aL~~Ly~~~~~~----------~~L~-lFt 322 (1096)
.++=|...+.+|-.+-+.||..+-...--.+++.+=.| .+.+.=..+|..|..++...+.- ..++ .|+
T Consensus 35 l~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (651)
T 3grl_A 35 LLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFT 114 (651)
T ss_dssp SHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHH
Confidence 55678888899999999999888776666667776666 46666667888998888543221 1222 255
Q ss_pred HHH------HHHHhhhcccCchhHHHHHHHHHHHHHhcC-------CC-CCCChhhHHhhhcCCChHHHHHHHHHHH
Q 001345 323 ERF------SNRMIELADDIDVSVAVCAIGLVKQLLRHQ-------LL-PDDDLGPLYDLLIDDPPEIRRAIGELVY 385 (1096)
Q Consensus 323 ~RF------k~RlveMa~D~D~~V~v~AI~Ll~~L~~~~-------~L-~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~ 385 (1096)
+-| -.-|++|....|..|+..|+++|..|..+. +| .+.-+..+..++=|.+..||..|..++.
T Consensus 115 d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~ 191 (651)
T 3grl_A 115 EIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQ 191 (651)
T ss_dssp HHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHH
T ss_pred HHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHH
Confidence 555 345788888899999999999999999762 55 5677888889999999999999988764
No 69
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=60.60 E-value=16 Score=44.21 Aligned_cols=74 Identities=16% Similarity=0.078 Sum_probs=60.7
Q ss_pred HHHHHHhhhceeEeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhc
Q 001345 235 LEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEV 311 (1096)
Q Consensus 235 ie~~i~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~ 311 (1096)
++.++..+.+.+ ...|.+|.||.-.+-.+......+|+..-.+.++..+.-+|.|+++.|...++.+|..+...
T Consensus 144 ~~~l~~~v~~~l---~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~ 217 (621)
T 2vgl_A 144 AEAFAGEIPKIL---VAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQK 217 (621)
T ss_dssp HHHHTTHHHHHH---HCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---hCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHh
Confidence 344444444333 12688999999999999999999999887778999999999999999999999999998754
No 70
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=59.78 E-value=18 Score=46.31 Aligned_cols=94 Identities=11% Similarity=0.128 Sum_probs=62.3
Q ss_pred CChhHHHHHHHHHHHHHhhCc-cccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcc-cHHHHHH-HHHHHHh
Q 001345 254 IDPNIRMSCIQSLGVWILSYP-SFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVP-TLGLFTE-RFSNRMI 330 (1096)
Q Consensus 254 v~p~IR~~Ci~eLG~Wi~~yP-~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~-~L~lFt~-RFk~Rlv 330 (1096)
..|+++..|++.|+.|+.--| ..+.++.++..+.-.|+| +++|..|+..|..++.+..... ++.+.-. ...+.+-
T Consensus 205 ~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~ 282 (980)
T 3ibv_A 205 KNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFS 282 (980)
T ss_dssp TCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHH
Confidence 578999999999999998654 456789999999999987 8999999999999997653321 2222111 1223333
Q ss_pred hhcc-cCchhHHHHHHHHHH
Q 001345 331 ELAD-DIDVSVAVCAIGLVK 349 (1096)
Q Consensus 331 eMa~-D~D~~V~v~AI~Ll~ 349 (1096)
.+.. +.|.++...-.+++.
T Consensus 283 ~l~~~~~D~d~~~~la~L~~ 302 (980)
T 3ibv_A 283 KSQEQSTDPNFDEHVAKLIN 302 (980)
T ss_dssp C-----CCHHHHHHHHHHHH
T ss_pred HHhcccccHHHHHHHHHHHH
Confidence 3332 566666554444443
No 71
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=57.49 E-value=2.1e+02 Score=30.80 Aligned_cols=127 Identities=13% Similarity=0.120 Sum_probs=92.6
Q ss_pred hHHHHHHHHHHHH-HhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhccc
Q 001345 257 NIRMSCIQSLGVW-ILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADD 335 (1096)
Q Consensus 257 ~IR~~Ci~eLG~W-i~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlveMa~D 335 (1096)
+-+..++.....- |...|. |+ +++|..+--.-+|++.+||.-+..-|...+..+. .+..+--+.|..|..|
T Consensus 30 ~~kl~~L~qa~el~~~~dp~-ll-~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~------~l~~~~l~~L~~Ll~d 101 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAE-LA-EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKV------ELLPHVINVVSMLLRD 101 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGG-GH-HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG------GGHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHccCHh-HH-HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHcC
Confidence 4666777777763 445676 33 7788888888899999999999999999985431 2344455677788889
Q ss_pred CchhHHHHHHHHHHHHHhcC----CCCCC---Chh-----------hHHhhhcCCChHHHHHHHHHHHHHHHHh
Q 001345 336 IDVSVAVCAIGLVKQLLRHQ----LLPDD---DLG-----------PLYDLLIDDPPEIRRAIGELVYDHLIAQ 391 (1096)
Q Consensus 336 ~D~~V~v~AI~Ll~~L~~~~----~L~~e---d~~-----------~V~~Lvfd~~~~Vr~AAg~fv~~~l~~~ 391 (1096)
.|+.|.-.||...+.+++.- .-.+. +++ .|..++-+.+..||-.|.+|+-.-...+
T Consensus 102 ~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~q 175 (257)
T 3gs3_A 102 NSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQ 175 (257)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhh
Confidence 99999999999999998851 11221 123 4556655789999999999986544444
No 72
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=57.44 E-value=51 Score=39.80 Aligned_cols=129 Identities=13% Similarity=0.090 Sum_probs=95.4
Q ss_pred ChhHHHHHHHHHHHHHhhC---cc----ccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHH
Q 001345 255 DPNIRMSCIQSLGVWILSY---PS----FFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSN 327 (1096)
Q Consensus 255 ~p~IR~~Ci~eLG~Wi~~y---P~----~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~ 327 (1096)
.++++.-++.+|....... +. .+-+..=+..|--+|...+..|+..+..+|..|-..+.+.. .+-...-+
T Consensus 322 ~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~---~I~~g~ip 398 (584)
T 3l6x_A 322 TPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKE---LIGKHAIP 398 (584)
T ss_dssp CHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHH---HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHH---HHHhCCHH
Confidence 5788888888886664321 21 23344558999999999999999999999999987765543 33567889
Q ss_pred HHhhhcccC--------chhHHHHHHHHHHHHHhc------CCCCCCChhhHHhhhcCC--ChHHHHHHHHHHHH
Q 001345 328 RMIELADDI--------DVSVAVCAIGLVKQLLRH------QLLPDDDLGPLYDLLIDD--PPEIRRAIGELVYD 386 (1096)
Q Consensus 328 RlveMa~D~--------D~~V~v~AI~Ll~~L~~~------~~L~~ed~~~V~~Lvfd~--~~~Vr~AAg~fv~~ 386 (1096)
+||.+.... ..++.+.|+..|..|... -+++..-+..+..|+.+. .+.+.++|+..++.
T Consensus 399 ~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~n 473 (584)
T 3l6x_A 399 NLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQT 473 (584)
T ss_dssp HHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHH
Confidence 999998533 357888999988777643 133444466888888875 88999999998765
No 73
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=54.07 E-value=59 Score=37.23 Aligned_cols=126 Identities=21% Similarity=0.223 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHH-HhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhcccC
Q 001345 258 IRMSCIQSLGVW-ILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDI 336 (1096)
Q Consensus 258 IR~~Ci~eLG~W-i~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlveMa~D~ 336 (1096)
.+..++..+..- +...|+.+ +.||.++.=.-+|++.+||.-++.-|...+..+ .++ ..+--+.|..|..|.
T Consensus 41 ~Kl~~L~q~~EL~l~~dpsLl--~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~-----~el-~~~~l~~L~~LL~d~ 112 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPTLL--DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRD-----IEL-LLKLIANLNMLLRDE 112 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGGGG--GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC-----GGG-HHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHhccCHHHH--HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH-----HHH-HHHHHHHHHHHHcCC
Confidence 455666666654 33566533 779999998899999999999999999998632 222 344555677777899
Q ss_pred chhHHHHHHHHHHHHHhcC---CC-CC---CCh-----------hhHHhhhcCCChHHHHHHHHHHHHHHHHh
Q 001345 337 DVSVAVCAIGLVKQLLRHQ---LL-PD---DDL-----------GPLYDLLIDDPPEIRRAIGELVYDHLIAQ 391 (1096)
Q Consensus 337 D~~V~v~AI~Ll~~L~~~~---~L-~~---ed~-----------~~V~~Lvfd~~~~Vr~AAg~fv~~~l~~~ 391 (1096)
|+.|.-.+|...+.|++.- +. .+ +.+ +.|..++-+.+..||-+|.+|+-.-...+
T Consensus 113 d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~q 185 (386)
T 3o2t_A 113 NVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTL 185 (386)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHh
Confidence 9999999999999888741 11 11 112 24556555688899999999976544443
No 74
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=51.21 E-value=78 Score=39.58 Aligned_cols=132 Identities=10% Similarity=0.087 Sum_probs=86.3
Q ss_pred ChhHHHHHHHHHHHHHhhCcccccc--chhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCC-CcccHHHHHHHHHHHHhh
Q 001345 255 DPNIRMSCIQSLGVWILSYPSFFLQ--DLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDD-NVPTLGLFTERFSNRMIE 331 (1096)
Q Consensus 255 ~p~IR~~Ci~eLG~Wi~~yP~~FL~--d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~-~~~~L~lFt~RFk~Rlve 331 (1096)
++.++..+...++..+..++..|.. +..+.++-|.+.-..-..=+..+.++...|+..+ ..+.+..+.+.+-..+++
T Consensus 698 ~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~ 777 (963)
T 2x19_B 698 DAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLT 777 (963)
T ss_dssp CHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHH
Confidence 3566666667888888888877754 5566677776654222223334555555555543 334566677777778888
Q ss_pred hcc-c--CchhHHHHHHHHHHHHHhc---CCCCCCC-hhhHHh----hhcCCChHHHHHHHHHHHH
Q 001345 332 LAD-D--IDVSVAVCAIGLVKQLLRH---QLLPDDD-LGPLYD----LLIDDPPEIRRAIGELVYD 386 (1096)
Q Consensus 332 Ma~-D--~D~~V~v~AI~Ll~~L~~~---~~L~~ed-~~~V~~----Lvfd~~~~Vr~AAg~fv~~ 386 (1096)
|.. | .+++|+...+.++..+.++ .++++.. +..|.. .+-+.++.+.+++..|+.+
T Consensus 778 ~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~ 843 (963)
T 2x19_B 778 LFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTE 843 (963)
T ss_dssp HHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 773 3 4689999999999999987 3554444 554433 3336788888888888764
No 75
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=47.86 E-value=24 Score=44.62 Aligned_cols=97 Identities=13% Similarity=0.102 Sum_probs=65.6
Q ss_pred ChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCC---------CcccHHHHHHHH
Q 001345 255 DPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDD---------NVPTLGLFTERF 325 (1096)
Q Consensus 255 ~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~---------~~~~L~lFt~RF 325 (1096)
.|-+|..++..||.|-...+..++.+ .|..+-=.|.|.+..||..|..+|..+.+..+ ....+..+....
T Consensus 471 ~p~vr~~a~~~lg~~~~~~~~~~l~~-~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~l 549 (960)
T 1wa5_C 471 HIILRVDAIKYIYTFRNQLTKAQLIE-LMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEIL 549 (960)
T ss_dssp CHHHHHHHHHHHHHTGGGSCHHHHHH-HHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHH
T ss_pred CceehHHHHHHHHHHHhhCCHHHHHH-HHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHH
Confidence 89999999999998877655444443 34455556789999999999999999886422 123355666666
Q ss_pred HHHHhhhcccC--------chhHHHHHHHHHHHHH
Q 001345 326 SNRMIELADDI--------DVSVAVCAIGLVKQLL 352 (1096)
Q Consensus 326 k~RlveMa~D~--------D~~V~v~AI~Ll~~L~ 352 (1096)
-++++.+.... +.+....||.-+..-.
T Consensus 550 l~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~ 584 (960)
T 1wa5_C 550 LKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTS 584 (960)
T ss_dssp HHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHH
Confidence 66777666322 4455556655444433
No 76
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=46.21 E-value=41 Score=42.20 Aligned_cols=141 Identities=11% Similarity=0.064 Sum_probs=100.6
Q ss_pred eeEeccccCCChhHHHHHHHHHHHHHhhCc---cccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccH-HH
Q 001345 245 GLFVHRYRDIDPNIRMSCIQSLGVWILSYP---SFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTL-GL 320 (1096)
Q Consensus 245 ~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP---~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L-~l 320 (1096)
..||+=-+.-+|+||..++..|+.-- ..+ ...++..-++.|-.+|.+....+|..+..+|.+|-...+..... ..
T Consensus 498 p~LV~LL~s~s~~vqe~Aa~aL~NLA-~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~ 576 (810)
T 3now_A 498 TALCALAKTESHNSQELIARVLNAVC-GLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQ 576 (810)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHHH-TSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcch
Confidence 45666666778999999999999775 333 34667788999999999999999999999999986432211000 00
Q ss_pred HHHHHHHHHhhhcc-cCchhHHHHHHHHHHHHHhcC------CCCCCChhhHHhhhcCCChHHHHHHHHHHHH
Q 001345 321 FTERFSNRMIELAD-DIDVSVAVCAIGLVKQLLRHQ------LLPDDDLGPLYDLLIDDPPEIRRAIGELVYD 386 (1096)
Q Consensus 321 Ft~RFk~RlveMa~-D~D~~V~v~AI~Ll~~L~~~~------~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~ 386 (1096)
-....-+.|+++.. |.+......|+..|..|.... +++..-+..+..|+++.++.|+++|.+.+.+
T Consensus 577 ~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~N 649 (810)
T 3now_A 577 RSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCN 649 (810)
T ss_dssp HHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHH
T ss_pred hhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 01125678888884 545455567887777777652 2333346688889999999999999998875
No 77
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=44.20 E-value=1e+02 Score=39.45 Aligned_cols=120 Identities=18% Similarity=0.128 Sum_probs=77.1
Q ss_pred CCChhHHHHHHHHHHHHHhhCcccc---------ccchhhhhhh----------------------hhcCCCChhHHHHH
Q 001345 253 DIDPNIRMSCIQSLGVWILSYPSFF---------LQDLYLKYLG----------------------WTLNDKSASVRKSS 301 (1096)
Q Consensus 253 Dv~p~IR~~Ci~eLG~Wi~~yP~~F---------L~d~YLKYlG----------------------W~L~Dk~~~VR~~~ 301 (1096)
|...+||......||.-...-|+.. .++.++||-+ -+.+|.+..||..+
T Consensus 519 ~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraA 598 (963)
T 4ady_A 519 TQHGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAA 598 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHH
T ss_pred cCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHH
Confidence 5677899998889985444344321 1466777753 12457788888888
Q ss_pred HHHHHhh-hhcCCCcccHHHHHHHHHHHHhhhc-ccCchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcCCChHHHHH
Q 001345 302 VLALQNL-YEVDDNVPTLGLFTERFSNRMIELA-DDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRA 379 (1096)
Q Consensus 302 L~aL~~L-y~~~~~~~~L~lFt~RFk~RlveMa-~D~D~~V~v~AI~Ll~~L~~~~~L~~ed~~~V~~Lvfd~~~~Vr~A 379 (1096)
+.+|--+ +++++.+ +|++++. .+.|+.||..|+--+..+.- |-=.++=++.+.++.-|.+.-||++
T Consensus 599 ViaLGlI~~g~~e~v-----------~rlv~~L~~~~d~~VR~gAalALGli~a-Gn~~~~aid~L~~L~~D~d~~Vrq~ 666 (963)
T 4ady_A 599 VIALGFVLLRDYTTV-----------PRIVQLLSKSHNAHVRCGTAFALGIACA-GKGLQSAIDVLDPLTKDPVDFVRQA 666 (963)
T ss_dssp HHHHHHHTSSSCSSH-----------HHHTTTGGGCSCHHHHHHHHHHHHHHTS-SSCCHHHHHHHHHHHTCSSHHHHHH
T ss_pred HHHHHhhccCCHHHH-----------HHHHHHHHhcCCHHHHHHHHHHHHHhcc-CCCcHHHHHHHHHHccCCCHHHHHH
Confidence 8888765 4554332 3666644 57788888887777766653 2112233566677777888888887
Q ss_pred HHHHH
Q 001345 380 IGELV 384 (1096)
Q Consensus 380 Ag~fv 384 (1096)
|..-+
T Consensus 667 Ai~AL 671 (963)
T 4ady_A 667 AMIAL 671 (963)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 78
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=42.72 E-value=29 Score=34.90 Aligned_cols=67 Identities=16% Similarity=0.265 Sum_probs=51.6
Q ss_pred HHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcC-------CChHHHHHHHHHHHHHH
Q 001345 321 FTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLID-------DPPEIRRAIGELVYDHL 388 (1096)
Q Consensus 321 Ft~RFk~RlveMa~D~D~~V~v~AI~Ll~~L~~~~~L~~ed~~~V~~Lvfd-------~~~~Vr~AAg~fv~~~l 388 (1096)
|...|-.++|+++.|.....+..+..||..|.. ++|+.+++..=+..++. +-|.+-.-.|+|+...+
T Consensus 41 ~~~~~V~~~I~~aldrk~~ere~~s~LL~~L~~-~~ls~~~i~~Gf~~lle~ldDl~iDiP~a~~~la~fiarav 114 (165)
T 2rg8_A 41 MKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAV 114 (165)
T ss_dssp GGGHHHHHHHHHHHTSCHHHHHHHHHHHHHHBT-TTBCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhChhhcccccchHHHHHHHHHHHH
Confidence 555677799999999999999999999999965 99999998655554442 35666677778865433
No 79
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=41.51 E-value=53 Score=41.27 Aligned_cols=94 Identities=15% Similarity=0.286 Sum_probs=64.4
Q ss_pred CCChhHHHHHHHHHH---HHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHH
Q 001345 253 DIDPNIRMSCIQSLG---VWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRM 329 (1096)
Q Consensus 253 Dv~p~IR~~Ci~eLG---~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~Rl 329 (1096)
|..|.+|..++..|| .|+...|. |+. .-|.+|--.| | +.|+..|..+|.++.+. ....|..+..-+-..+
T Consensus 517 d~~~~vr~~a~~~l~~~~~~l~~~~~-~l~-~vl~~l~~~l-~--~~v~~~A~~al~~l~~~--~~~~l~p~~~~ll~~l 589 (971)
T 2x1g_F 517 KLNVKLLGTALETMGSYCNWLMENPA-YIP-PAINLLVRGL-N--SSMSAQATLGLKELCRD--CQLQLKPYADPLLNAC 589 (971)
T ss_dssp TSCHHHHHHHHHHHHHTHHHHC-----CHH-HHHHHHHHHH-H--SSCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHhcCHH-HHH-HHHHHHHHHh-C--hHHHHHHHHHHHHHHHH--HHHhccccHHHHHHHH
Confidence 788999999998888 67777663 443 3456666666 4 88999999999999853 2345666777677777
Q ss_pred hhhcc--cCchhHHHHHHHHHHHHHh
Q 001345 330 IELAD--DIDVSVAVCAIGLVKQLLR 353 (1096)
Q Consensus 330 veMa~--D~D~~V~v~AI~Ll~~L~~ 353 (1096)
.++.. +.+..+...+++-+..+..
T Consensus 590 ~~~l~~~~~~~~~~~~~~~ai~~i~~ 615 (971)
T 2x1g_F 590 HASLNTGRMKNSDSVRLMFSIGKLMS 615 (971)
T ss_dssp HHHHHSTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCChHHHHHHHHHHHHHHH
Confidence 77763 3566777777776666654
No 80
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=39.86 E-value=20 Score=45.81 Aligned_cols=81 Identities=17% Similarity=0.248 Sum_probs=63.8
Q ss_pred CCChhHHHHHHHHHHHHHhhCcccccc------chhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCC---CcccHHHHHH
Q 001345 253 DIDPNIRMSCIQSLGVWILSYPSFFLQ------DLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDD---NVPTLGLFTE 323 (1096)
Q Consensus 253 Dv~p~IR~~Ci~eLG~Wi~~yP~~FL~------d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~---~~~~L~lFt~ 323 (1096)
|-.|++|..++.-|+.-+..+|..|+. ...+....|++.-+.+.+...+++.|..|+.+.. .......|..
T Consensus 815 ~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~f~~ 894 (1049)
T 3m1i_C 815 TEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGNVPFANEFHK 894 (1049)
T ss_dssp SSSHHHHHHHHHHHHHHHHHCTHHHHHSCHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHH
T ss_pred hhCHHHHHHHHHHHHHHHHhCHHHHHcCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 448999999999999999999999874 3467789999999999999999999999986422 1123556777
Q ss_pred HHHHHHhhhc
Q 001345 324 RFSNRMIELA 333 (1096)
Q Consensus 324 RFk~RlveMa 333 (1096)
.|-..|+...
T Consensus 895 ~~~~~l~~~~ 904 (1049)
T 3m1i_C 895 NYFFIFVSET 904 (1049)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666665543
No 81
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=38.00 E-value=1.1e+02 Score=39.01 Aligned_cols=89 Identities=17% Similarity=0.129 Sum_probs=66.5
Q ss_pred CCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhh
Q 001345 253 DIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIEL 332 (1096)
Q Consensus 253 Dv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlveM 332 (1096)
|.+.++|...+.+||.-...-| ....+.++-++.+.++.||..+.-+|-.++.-......+. -|..|
T Consensus 589 d~~d~VRraAViaLGlI~~g~~-----e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid--------~L~~L 655 (963)
T 4ady_A 589 DSNDDVRRAAVIALGFVLLRDY-----TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAID--------VLDPL 655 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTSSSC-----SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHH--------HHHHH
T ss_pred CCcHHHHHHHHHHHHhhccCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHH--------HHHHH
Confidence 6788999999999995444445 3467888888899999999999999998874322211111 33345
Q ss_pred cccCchhHHHHHHHHHHHHHhc
Q 001345 333 ADDIDVSVAVCAIGLVKQLLRH 354 (1096)
Q Consensus 333 a~D~D~~V~v~AI~Ll~~L~~~ 354 (1096)
..|.|..||..||--|..+..-
T Consensus 656 ~~D~d~~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 656 TKDPVDFVRQAAMIALSMILIQ 677 (963)
T ss_dssp HTCSSHHHHHHHHHHHHHHSTT
T ss_pred ccCCCHHHHHHHHHHHHHHhcC
Confidence 6899999999999888777654
No 82
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=37.10 E-value=80 Score=36.22 Aligned_cols=102 Identities=13% Similarity=0.169 Sum_probs=73.7
Q ss_pred hhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhcC------CC
Q 001345 284 KYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQ------LL 357 (1096)
Q Consensus 284 KYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlveMa~D~D~~V~v~AI~Ll~~L~~~~------~L 357 (1096)
.-+-++|...+++++..+..+|..|-...+.. +......-.-+.||.+....+.+|...|...|..|.... +.
T Consensus 5 ~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~-~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~ 83 (457)
T 1xm9_A 5 PKAVQYLSSQDEKYQAIGAYYIQHTCFQDESA-KQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR 83 (457)
T ss_dssp HHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSH-HHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHcCChHH-HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 34556677788999999999999986443321 222334456678999998888999999999999888641 22
Q ss_pred CCCChhhHHhhhc-CCChHHHHHHHHHHHH
Q 001345 358 PDDDLGPLYDLLI-DDPPEIRRAIGELVYD 386 (1096)
Q Consensus 358 ~~ed~~~V~~Lvf-d~~~~Vr~AAg~fv~~ 386 (1096)
+..-+..+.+++- +.++.++..|+..+..
T Consensus 84 ~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~n 113 (457)
T 1xm9_A 84 RQNGIREAVSLLRRTGNAEIQKQLTGLLWN 113 (457)
T ss_dssp HTTCHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 3334557778887 7788888888877654
No 83
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=34.60 E-value=57 Score=32.35 Aligned_cols=67 Identities=16% Similarity=0.236 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhhhcccC-chhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcC-------CChHHHHHHHHHHHH
Q 001345 320 LFTERFSNRMIELADDI-DVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLID-------DPPEIRRAIGELVYD 386 (1096)
Q Consensus 320 lFt~RFk~RlveMa~D~-D~~V~v~AI~Ll~~L~~~~~L~~ed~~~V~~Lvfd-------~~~~Vr~AAg~fv~~ 386 (1096)
.|-.-|-.+.|.|+.|+ +...+....+||..|.+.++|+.+++..=+.-+++ +-|....-.|.|+..
T Consensus 39 ~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~~vl~~ldDl~lDiP~A~~~la~~v~~ 113 (152)
T 2ion_A 39 HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEE 113 (152)
T ss_dssp GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHhChHhccCccchHHHHHHHHHH
Confidence 56677888999999988 57889999999999999999999988654444442 355555666666543
No 84
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=33.57 E-value=49 Score=41.45 Aligned_cols=76 Identities=20% Similarity=0.197 Sum_probs=58.3
Q ss_pred ChhHHHHHHHHHHHHHhhCccccccchh-h----hhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHH
Q 001345 255 DPNIRMSCIQSLGVWILSYPSFFLQDLY-L----KYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRM 329 (1096)
Q Consensus 255 ~p~IR~~Ci~eLG~Wi~~yP~~FL~d~Y-L----KYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~Rl 329 (1096)
.|++|..++.-|+.-+..+|..|+.+.. + ..+.|.|...+..|-..|+..|..+.......+.+..|...|-..|
T Consensus 786 ~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l 865 (963)
T 2x19_B 786 HPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRML 865 (963)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHH
T ss_pred CchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 7999999999999999999999986554 4 4679999999999999999999999865332233444443333333
Q ss_pred h
Q 001345 330 I 330 (1096)
Q Consensus 330 v 330 (1096)
+
T Consensus 866 ~ 866 (963)
T 2x19_B 866 L 866 (963)
T ss_dssp H
T ss_pred H
Confidence 3
No 85
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=33.23 E-value=99 Score=37.44 Aligned_cols=107 Identities=15% Similarity=0.142 Sum_probs=69.7
Q ss_pred eccccC-----CChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHH
Q 001345 248 VHRYRD-----IDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFT 322 (1096)
Q Consensus 248 vhRyRD-----v~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt 322 (1096)
.-|+-| |..=||-.|-+.||.- ...|+.| .-|..+--.+..+.=+||...|-+|.-+ .+.... .
T Consensus 229 LDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e~---~IL~qLV~~l~~~~WEVRHGGLLGLKYL---~DLL~~----L 297 (800)
T 3oc3_A 229 TDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGPN---DIIEQLVGFLDSGDWQVQFSGLIALGYL---KEFVED----K 297 (800)
T ss_dssp HBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCSC---CHHHHHTTGGGCSCHHHHHHHHHHHHHT---GGGCCC----H
T ss_pred hccccccccCeeeeehHHHHHHHHHHH-HhCChhH---HHHHHHHhhcCCCCeeehhhhHHHHHHH---HHHHHH----H
Confidence 445555 5556999999999986 6666651 2222222234677788999999998877 344433 3
Q ss_pred HHHHHHHhhhcccCchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhc
Q 001345 323 ERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLI 370 (1096)
Q Consensus 323 ~RFk~RlveMa~D~D~~V~v~AI~Ll~~L~~~~~L~~ed~~~V~~Lvf 370 (1096)
.++.+-++.--.|.|.+|+..|...|.-+. .++.++.|...+|
T Consensus 298 d~Vv~aVL~GL~D~DDDVRAVAAetLiPIA-----~p~~l~~LL~iLW 340 (800)
T 3oc3_A 298 DGLCRKLVSLLSSPDEDIKLLSAELLCHFP-----ITDSLDLVLEKCW 340 (800)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHTTSC-----CSSTHHHHHHHHH
T ss_pred HHHHHHHHhhcCCcccHHHHHHHHHhhhhc-----chhhHHHHHHHHH
Confidence 444444444446899999888888776665 4566666666665
No 86
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=31.37 E-value=80 Score=39.63 Aligned_cols=130 Identities=12% Similarity=0.084 Sum_probs=94.5
Q ss_pred CCChhHHHHHHHHHHHHHhhCcc---cccc-chhhhhhhhhcCCCChhHHHHHHHHHHhhhh-cCCCcccHHHHH--HHH
Q 001345 253 DIDPNIRMSCIQSLGVWILSYPS---FFLQ-DLYLKYLGWTLNDKSASVRKSSVLALQNLYE-VDDNVPTLGLFT--ERF 325 (1096)
Q Consensus 253 Dv~p~IR~~Ci~eLG~Wi~~yP~---~FL~-d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~-~~~~~~~L~lFt--~RF 325 (1096)
+-.+.||..+.+.|+.=+. .|+ .|.+ ..-+++|--+|...+..+|.++..+|..|-. +++ ....+. ..+
T Consensus 634 s~~~~Vq~~A~~~L~NLa~-~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~---~~~~ii~~~g~ 709 (810)
T 3now_A 634 EDHLYLTRAAAQCLCNLVM-SEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVK---CCEKILAIASW 709 (810)
T ss_dssp SCCTTHHHHHHHHHHHHTT-SHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHH---HHHHHHTSTTH
T ss_pred CCCHHHHHHHHHHHHHHhC-ChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHH---HHHHHHHHcCC
Confidence 4568999999999997553 333 3554 5788898888999999999999999999976 332 233333 468
Q ss_pred HHHHhhhcccCchhHHHHHHHHHHHHHhcC------CCCCCChhhHHhhhcCC---ChHHHHHHHHHHHH
Q 001345 326 SNRMIELADDIDVSVAVCAIGLVKQLLRHQ------LLPDDDLGPLYDLLIDD---PPEIRRAIGELVYD 386 (1096)
Q Consensus 326 k~RlveMa~D~D~~V~v~AI~Ll~~L~~~~------~L~~ed~~~V~~Lvfd~---~~~Vr~AAg~fv~~ 386 (1096)
-+.|+.|+...|.+|+..|+..+..|..++ +.+..-++.+..++-+. ++.|...|.+-+..
T Consensus 710 I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ 779 (810)
T 3now_A 710 LDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAA 779 (810)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHH
Confidence 889999999999999999999999998753 22333344555554333 67777777776543
No 87
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=30.55 E-value=73 Score=30.55 Aligned_cols=66 Identities=17% Similarity=0.225 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhhhcccCc-hhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcC-------CChHHHHHHHHHHH
Q 001345 320 LFTERFSNRMIELADDID-VSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLID-------DPPEIRRAIGELVY 385 (1096)
Q Consensus 320 lFt~RFk~RlveMa~D~D-~~V~v~AI~Ll~~L~~~~~L~~ed~~~V~~Lvfd-------~~~~Vr~AAg~fv~ 385 (1096)
.|-..|-.+.|.|+.|+. ...+....+||..+.+.|+++.+++..=+.-+++ +-|....-.|+|+.
T Consensus 37 ~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~~v~~~l~Dl~lDiP~a~~~l~~~v~ 110 (129)
T 2nsz_A 37 HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVE 110 (129)
T ss_dssp GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHhhChHhhcCccchHHHHHHHHH
Confidence 466677789999998885 4789999999999999999998887644444432 24444455555543
No 88
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=26.83 E-value=1.9e+02 Score=36.21 Aligned_cols=95 Identities=11% Similarity=0.016 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHHHHh--hCccccccchhhhhhhhhc----------------CCCChhHHHHHHHHHHhhhhcCCCcccH
Q 001345 257 NIRMSCIQSLGVWIL--SYPSFFLQDLYLKYLGWTL----------------NDKSASVRKSSVLALQNLYEVDDNVPTL 318 (1096)
Q Consensus 257 ~IR~~Ci~eLG~Wi~--~yP~~FL~d~YLKYlGW~L----------------~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L 318 (1096)
+++..+++.++.|+. ..|.. .++..+.++.- | ++.++++|..++..|..+...++....+
T Consensus 204 ~~~~~al~~l~~~~~~~~ip~~-~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~ 281 (971)
T 2x1g_F 204 SNMNRAVKCVGTWIKNIGYTIE-GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYP 281 (971)
T ss_dssp HHHHHHHHHHHHHHHHSCCCGG-GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCH
T ss_pred hHHHHHHHHHHHHHhhCCcCcc-ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccH
Confidence 899999999999998 46777 66667776654 4 2467899999999999999764422223
Q ss_pred HHHHHHHHHHHhhh------c-ccCch---hHHHHHHHHHHHHHhc
Q 001345 319 GLFTERFSNRMIEL------A-DDIDV---SVAVCAIGLVKQLLRH 354 (1096)
Q Consensus 319 ~lFt~RFk~RlveM------a-~D~D~---~V~v~AI~Ll~~L~~~ 354 (1096)
..+ ..+-+.++++ + .+.|. +++....+++..+.+.
T Consensus 282 ~~~-~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~ 326 (971)
T 2x1g_F 282 KTA-FVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVER 326 (971)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 232 2233444442 2 44554 7777777887776643
No 89
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=26.75 E-value=65 Score=36.52 Aligned_cols=67 Identities=16% Similarity=0.246 Sum_probs=51.2
Q ss_pred HHHHHHHHhhhcccCchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcC-------CChHHHHHHHHHHHHHHH
Q 001345 322 TERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLID-------DPPEIRRAIGELVYDHLI 389 (1096)
Q Consensus 322 t~RFk~RlveMa~D~D~~V~v~AI~Ll~~L~~~~~L~~ed~~~V~~Lvfd-------~~~~Vr~AAg~fv~~~l~ 389 (1096)
...|-.++|++++|....-+..+..||..|.. ++|+.+++..=+..++. +-|.+-.-.|.|+...+.
T Consensus 86 ~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~lle~ldDl~lDiP~a~~~la~flaRaV~ 159 (358)
T 3eiq_C 86 KSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTNDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVG 159 (358)
T ss_dssp GGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTT-TSCCHHHHHHHHHHHHHTHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHHHHHH
Confidence 45577799999999999999999999999995 99999988766655553 245555666677654433
No 90
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=26.68 E-value=2.3e+02 Score=35.41 Aligned_cols=100 Identities=14% Similarity=0.115 Sum_probs=76.1
Q ss_pred CCChhHHHHHHHHHHHHHhhCcc----ccccch------hhhhhhhhcCCCChhHHHHHHHHHHhhhh-cCCCcccHHHH
Q 001345 253 DIDPNIRMSCIQSLGVWILSYPS----FFLQDL------YLKYLGWTLNDKSASVRKSSVLALQNLYE-VDDNVPTLGLF 321 (1096)
Q Consensus 253 Dv~p~IR~~Ci~eLG~Wi~~yP~----~FL~d~------YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~-~~~~~~~L~lF 321 (1096)
+-.+.||....+.+..-+. .|. .|++.. .|+.|--++...+.++|.++.-+|..|-. .+.....+ .=
T Consensus 617 s~n~~VrrAA~elI~NL~~-~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~l-l~ 694 (778)
T 3opb_A 617 DENVPLQRSTLELISNMMS-HPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKEL-LT 694 (778)
T ss_dssp CSSHHHHHHHHHHHHHHHT-SGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHH-TT
T ss_pred CCCHHHHHHHHHHHHHHhC-CcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHH-HH
Confidence 4577999999888888775 665 466422 58888888899999999999999999953 32211111 11
Q ss_pred HHHHHHHHhhhccc--CchhHHHHHHHHHHHHHhc
Q 001345 322 TERFSNRMIELADD--IDVSVAVCAIGLVKQLLRH 354 (1096)
Q Consensus 322 t~RFk~RlveMa~D--~D~~V~v~AI~Ll~~L~~~ 354 (1096)
..++-+.+++|+.| .|.+++..++-++..|...
T Consensus 695 ~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 695 KKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp CHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred ccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 13688899999988 8999999999999999974
No 91
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=25.94 E-value=1e+02 Score=39.50 Aligned_cols=87 Identities=10% Similarity=0.127 Sum_probs=62.5
Q ss_pred HHHHHHhhhceeEeccc-cCCChhHHHHHHHHHHH---HHhhCccccccchhhhhhhh--hcCCCChhHHHHHHHHHHhh
Q 001345 235 LEDMMRKIFTGLFVHRY-RDIDPNIRMSCIQSLGV---WILSYPSFFLQDLYLKYLGW--TLNDKSASVRKSSVLALQNL 308 (1096)
Q Consensus 235 ie~~i~~iF~~VFvhRy-RDv~p~IR~~Ci~eLG~---Wi~~yP~~FL~d~YLKYlGW--~L~Dk~~~VR~~~L~aL~~L 308 (1096)
+.+++..+.++ +. .|-.|.||..|++-+|. |+..+|+++ +.-|.||-- .++|++..||..|-.++.++
T Consensus 491 l~~ll~~ll~s----~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l--~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f 564 (980)
T 3ibv_A 491 LSQILALVTTS----QVCRHPHPLVQLLYMEILVRYASFFDYESAAI--PALIEYFVGPRGIHNTNERVRPRAWYLFYRF 564 (980)
T ss_dssp HHHHHHHHHHS----STTTCCCHHHHHHHHHHHHHTGGGGGTCCTTH--HHHHHHHTSTTTTTCCCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhC----CCCCCCCHHHHHHHHHHHHHHHHHHhcCchhH--HHHHHHHhccccccCCChhHHHHHHHHHHHH
Confidence 45666555543 22 36789999999999995 888888543 345777777 88899999999999999999
Q ss_pred hhc--CCCcccHHHHHHHHHH
Q 001345 309 YEV--DDNVPTLGLFTERFSN 327 (1096)
Q Consensus 309 y~~--~~~~~~L~lFt~RFk~ 327 (1096)
.+. +.+.+-+..+.+.+.+
T Consensus 565 ~~~~~~~L~~~~~~il~~l~~ 585 (980)
T 3ibv_A 565 VKSIKKQVVNYTESSLAMLGD 585 (980)
T ss_dssp HHHTTTTCSSSHHHHHHHTTG
T ss_pred HHHhhHHhhhHHHHHHHHHHH
Confidence 863 2344555556665554
No 92
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=25.50 E-value=57 Score=36.10 Aligned_cols=64 Identities=17% Similarity=0.272 Sum_probs=46.6
Q ss_pred HHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcC-------CChHHHHHHHHHHH
Q 001345 321 FTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLID-------DPPEIRRAIGELVY 385 (1096)
Q Consensus 321 Ft~RFk~RlveMa~D~D~~V~v~AI~Ll~~L~~~~~L~~ed~~~V~~Lvfd-------~~~~Vr~AAg~fv~ 385 (1096)
|-..|-.++|++++|....-+..+..||..|. .++|+.+++..=+..++. +-|.+..-.|.|+.
T Consensus 34 ~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~-~~~ls~~~i~~gf~~ll~~ldDl~lD~P~a~~~la~fla 104 (307)
T 2zu6_B 34 MKSGVPVLAVSLALEGKASHREMTSKLLSDLC-GTVMSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIA 104 (307)
T ss_dssp GGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHH-HHTBCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhhhHhcccccchHHHHHHHHH
Confidence 55556779999999999999999999999998 489998888654444441 23444445555543
No 93
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=24.05 E-value=87 Score=35.44 Aligned_cols=65 Identities=15% Similarity=0.203 Sum_probs=50.3
Q ss_pred HHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcCC-------ChHHHHHHHHHHH
Q 001345 321 FTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDD-------PPEIRRAIGELVY 385 (1096)
Q Consensus 321 Ft~RFk~RlveMa~D~D~~V~v~AI~Ll~~L~~~~~L~~ed~~~V~~Lvfd~-------~~~Vr~AAg~fv~ 385 (1096)
|-..|-.++|+|+.|.....+..+.+||..|.+.++++.+++..=+..+++. -|.+-.-.|+|+.
T Consensus 44 ~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~lle~l~Dl~iDiP~a~~~la~f~a 115 (364)
T 3l6a_A 44 FLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLNVLDQCPKLEVDIPLVKSYLAQFAA 115 (364)
T ss_dssp GHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHHHCTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhChHhccccccHHHHHHHHHH
Confidence 4445777899999999999999999999999999999999887666665533 4444455556654
No 94
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=23.79 E-value=4.7e+02 Score=27.92 Aligned_cols=100 Identities=15% Similarity=0.055 Sum_probs=66.2
Q ss_pred HHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhh-hcccCchhHHHHHHH
Q 001345 268 VWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIE-LADDIDVSVAVCAIG 346 (1096)
Q Consensus 268 ~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~Rlve-Ma~D~D~~V~v~AI~ 346 (1096)
.|+..++ .+..+..+-=+..|.+-+||.-++..|..+ . .. ...- +-|.+ .+.|....|+..+-.
T Consensus 62 ~~~~~~~----~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~--~~-~~~L-------~~ir~~va~D~~WrVre~lA~ 126 (240)
T 3l9t_A 62 TDYKSND----GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S--KD-KEIL-------IFMRDEVSKDNNWRVQEVLAK 126 (240)
T ss_dssp HHHHHSC----HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T--TS-HHHH-------HHHHHTGGGCSCHHHHHHHHH
T ss_pred HHHHhCC----HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c--Cc-HHHH-------HHHHHHhCCCCCccHHHHHHH
Confidence 3445554 223334444456777889999999987777 3 11 1211 23334 457999999999888
Q ss_pred HHHHHHh-cCCCCCCChhhHHhhhcCCChHHHHHHHHHH
Q 001345 347 LVKQLLR-HQLLPDDDLGPLYDLLIDDPPEIRRAIGELV 384 (1096)
Q Consensus 347 Ll~~L~~-~~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv 384 (1096)
.+..+.. .+ .+.-+..+-...-|+++-||++|.+..
T Consensus 127 a~~~~~~~~~--pe~~l~~~~~W~~d~n~~VRR~Ase~~ 163 (240)
T 3l9t_A 127 AFDEFCKKIE--YKKALPIIDEWLKSSNLHTRRAATEGL 163 (240)
T ss_dssp HHHHHHHHHC--TTTTHHHHHHHHHCSSHHHHHHHHHHT
T ss_pred HHHHHHHhcC--HHHHHHHHHHHhcCCCHHHHHHHHHhh
Confidence 8888886 43 222245666778899999999999875
No 95
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=22.07 E-value=3.1e+02 Score=34.18 Aligned_cols=133 Identities=13% Similarity=0.184 Sum_probs=94.6
Q ss_pred cCCChhH-HHHHHHHHHHHHhhCc--------ccccc-chhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCc-ccHHH
Q 001345 252 RDIDPNI-RMSCIQSLGVWILSYP--------SFFLQ-DLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNV-PTLGL 320 (1096)
Q Consensus 252 RDv~p~I-R~~Ci~eLG~Wi~~yP--------~~FL~-d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~-~~L~l 320 (1096)
||-.|.. +...+.+|+.- -.+| ...+. ..++..|--.|.+.+..||.++...|..|-.+++.+ .++..
T Consensus 568 ~~~~~~l~~feAL~ALTNL-As~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~ 646 (778)
T 3opb_A 568 DEQIKLTDNYEALLALTNL-ASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFN 646 (778)
T ss_dssp CCCCCHHHHHHHHHHHHHH-HHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSC
T ss_pred cccccHHHHHHHHHHHHHH-hcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHh
Confidence 3334434 55666676654 3455 22455 378899999999999999999999999999876532 12211
Q ss_pred H-----HHHHHHHHhhhcccCchhHHHHHHHHHHHHHh-c-----CCCCC-CChhhHHhhhcC--CChHHHHHHHHHHHH
Q 001345 321 F-----TERFSNRMIELADDIDVSVAVCAIGLVKQLLR-H-----QLLPD-DDLGPLYDLLID--DPPEIRRAIGELVYD 386 (1096)
Q Consensus 321 F-----t~RFk~RlveMa~D~D~~V~v~AI~Ll~~L~~-~-----~~L~~-ed~~~V~~Lvfd--~~~~Vr~AAg~fv~~ 386 (1096)
+ ..||+ -||.++...|.+++..|...+..+-. . .+++. +-++.+..++-+ +++.+++-++-++++
T Consensus 647 ~~~~~~~~rL~-lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~N 725 (778)
T 3opb_A 647 LENPQSLRNFN-ILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFG 725 (778)
T ss_dssp CSSHHHHHHHH-HHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCchhhccHH-HHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 1 12344 68999988899999999998888843 2 35555 456777777777 899999999988886
No 96
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=21.45 E-value=1.8e+02 Score=28.15 Aligned_cols=72 Identities=7% Similarity=0.123 Sum_probs=47.2
Q ss_pred ChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhcc----cCchhHHHHHHHHHHHHHhcCCCCCCChhhHH
Q 001345 294 SASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELAD----DIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLY 366 (1096)
Q Consensus 294 ~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~RlveMa~----D~D~~V~v~AI~Ll~~L~~~~~L~~ed~~~V~ 366 (1096)
.+.-|+..|--+..+..+-... .-..|...|.+-|.++.. ..|.++.-...+++..--+.++.+++.+..+-
T Consensus 53 ~~~kKL~~lYL~NDVlqnsk~k-~~~~f~~~F~~~L~~~~~~~~~~~~~~~~~kv~rvl~iWeer~vf~~~~i~~L~ 128 (142)
T 2km4_A 53 NTRRKLLGLYLMNHVVQQAKGQ-KIIQFQDSFGKVAAEVLGRINQEFPRDLKKKLSRVVNILKERNIFSKQVVNDIE 128 (142)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGG-TCCHHHHHHHHTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCSCHHHHHHHH
T ss_pred CccceehhhhhHHHHHHHHhhc-CchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCcCHHHHHHHH
Confidence 4455665555554444221100 113588888888888773 35888888888888888888988877776653
No 97
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=21.26 E-value=1.8e+02 Score=32.21 Aligned_cols=65 Identities=18% Similarity=0.062 Sum_probs=51.2
Q ss_pred HHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhc-------CCChHHHHHHHHHHH
Q 001345 321 FTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLI-------DDPPEIRRAIGELVY 385 (1096)
Q Consensus 321 Ft~RFk~RlveMa~D~D~~V~v~AI~Ll~~L~~~~~L~~ed~~~V~~Lvf-------d~~~~Vr~AAg~fv~ 385 (1096)
|-.-|-.++|.++.|.....+..+.+||..|.+.|+++.+++..=+.-++ -+-|..+.-.|.|+.
T Consensus 42 ~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~~l~Dl~lDiP~a~~~La~~v~ 113 (339)
T 1ug3_A 42 LLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILELAEDMEIDIPHVWLYLAELVT 113 (339)
T ss_dssp GHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHG
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhChHhhcCccchHHHHHHHHH
Confidence 55567789999999988899999999999999999999998865554444 256666666777753
No 98
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=20.93 E-value=2.5e+02 Score=29.32 Aligned_cols=99 Identities=14% Similarity=0.199 Sum_probs=68.7
Q ss_pred ChhHHHHHHHHHHHHHhhCcc---ccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCC--C-c-ccHHHHHH----
Q 001345 255 DPNIRMSCIQSLGVWILSYPS---FFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDD--N-V-PTLGLFTE---- 323 (1096)
Q Consensus 255 ~p~IR~~Ci~eLG~Wi~~yP~---~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~--~-~-~~L~lFt~---- 323 (1096)
+.++-..|+..|..-|..-+- ..-.+.++..|..+|.-+++.+|..+++-|..+.-.++ . . .-|+.|+.
T Consensus 67 ~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~ 146 (233)
T 2f31_A 67 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM 146 (233)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHh
Confidence 467778888888766654321 23356688999999999999999999998877654432 2 1 12444443
Q ss_pred ----HHHHHHhhhc-ccCchhHHHHHHHHHHHHHhc
Q 001345 324 ----RFSNRMIELA-DDIDVSVAVCAIGLVKQLLRH 354 (1096)
Q Consensus 324 ----RFk~RlveMa-~D~D~~V~v~AI~Ll~~L~~~ 354 (1096)
||. .+|+.- ...+.+..+.++.++..|...
T Consensus 147 ~e~~RF~-~lv~~l~~~~~~e~~~~~m~lIN~li~~ 181 (233)
T 2f31_A 147 DEVERFQ-PLLDGLKSGTSIALKVGCLQLINALITP 181 (233)
T ss_dssp HTSCTTH-HHHHTTSTTSCHHHHHHHHHHHHHHHTT
T ss_pred CCcchHH-HHHHHHhcCChHHHHHHHHHHHHHHHCC
Confidence 555 266655 356778888899999888886
No 99
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=20.70 E-value=1.7e+02 Score=32.57 Aligned_cols=130 Identities=15% Similarity=0.090 Sum_probs=85.1
Q ss_pred ChhHHHHHHHHHHHHHhhCc---cccc-cchhhhhhhhhcCCCCh----hHHHHHHHHHHhhhh----cCCCcccHHHHH
Q 001345 255 DPNIRMSCIQSLGVWILSYP---SFFL-QDLYLKYLGWTLNDKSA----SVRKSSVLALQNLYE----VDDNVPTLGLFT 322 (1096)
Q Consensus 255 ~p~IR~~Ci~eLG~Wi~~yP---~~FL-~d~YLKYlGW~L~Dk~~----~VR~~~L~aL~~Ly~----~~~~~~~L~lFt 322 (1096)
+++++..++..|+.--...+ ..+. ...-+..|--+|.+.+. +|+..+.-+|..|-. +++....+..
T Consensus 184 ~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~-- 261 (354)
T 3nmw_A 184 KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE-- 261 (354)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHT--
T ss_pred CHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHH--
Confidence 45666666655544322121 2333 56677777777876654 489989888888863 4443322211
Q ss_pred HHHHHHHhhhcccCchhHHHHHHHHHHHHHhc------CCCCCCChhhHHhhhcCCChHHHHHHHHHHHH
Q 001345 323 ERFSNRMIELADDIDVSVAVCAIGLVKQLLRH------QLLPDDDLGPLYDLLIDDPPEIRRAIGELVYD 386 (1096)
Q Consensus 323 ~RFk~RlveMa~D~D~~V~v~AI~Ll~~L~~~------~~L~~ed~~~V~~Lvfd~~~~Vr~AAg~fv~~ 386 (1096)
.-.-+.||++..+.+..|...|+..|..|... .+++..-+..+..|+-+.++.+++.|+.-+..
T Consensus 262 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~n 331 (354)
T 3nmw_A 262 NNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRN 331 (354)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 22456889998888999999999999888742 12222334567788888999999888877664
No 100
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=20.36 E-value=43 Score=33.22 Aligned_cols=82 Identities=15% Similarity=0.256 Sum_probs=57.0
Q ss_pred CCccchHhHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcccCCCccHHHHHHHH
Q 001345 146 GPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFISVAKMLGAQRETTQRQLNAEKKKRVEGPRVESLNKRL 225 (1096)
Q Consensus 146 ~~L~D~~lmd~l~~wL~~LS~S~vR~fRHTATl~aL~l~taLv~va~~l~~~~~~~qrQleaEk~K~~~~~r~e~l~~~~ 225 (1096)
..+.|..++.-+..||-.|.+-..-+ +.|-+++.++-..+..+. +.|.+.
T Consensus 55 ~~~ld~giL~~l~~WL~PLpDgsLP~---------~~Ir~~lL~~L~~lPI~~--------------------e~Lk~S- 104 (145)
T 2xpp_A 55 ESLLDEGILDEIKGWLEPLPDKSMPN---------IKIRKRLLDVLKTMKIHK--------------------EHLVTS- 104 (145)
T ss_dssp HHHHHTTHHHHHHHHHSCCTTSCCCC---------HHHHHHHHHHHHTSCCCH--------------------HHHHHH-
T ss_pred HHHHHcCHHHHHHHHhCcCCCCCCCC---------HHHHHHHHHHHHHCCCCH--------------------HHhhcC-
Confidence 44568889999999999999886554 566777777655554211 111100
Q ss_pred HHHHHhHHHHHHHHHhhhceeEeccccCCChhHHHHHHHHHHHHHh
Q 001345 226 SMTHKNITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWIL 271 (1096)
Q Consensus 226 ~e~~~~~e~ie~~i~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~ 271 (1096)
-|-..+ +|..+..+.-|+||..|-.-++.|.+
T Consensus 105 --------glGkvv------~~l~k~~~et~~nk~la~~Li~~WsR 136 (145)
T 2xpp_A 105 --------GVGKIV------YFYSINPKESKEVRASAKALVQKWTN 136 (145)
T ss_dssp --------CHHHHH------HHHHHCTTSCHHHHHHHHHHHHHHHH
T ss_pred --------CCCcch------hhhhcCCccCHHHHHHHHHHHHHHHH
Confidence 112221 58899999999999999999999965
Done!