Query 001346
Match_columns 1095
No_of_seqs 401 out of 2315
Neff 6.6
Searched_HMMs 46136
Date Thu Mar 28 22:25:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001346.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001346hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 100.0 1E-207 3E-212 1879.3 73.8 754 157-924 8-786 (1463)
2 PTZ00014 myosin-A; Provisional 100.0 9E-202 2E-206 1840.4 75.8 751 161-924 43-818 (821)
3 cd01383 MYSc_type_VIII Myosin 100.0 2E-190 4E-195 1721.9 67.0 677 202-879 1-677 (677)
4 cd01381 MYSc_type_VII Myosin m 100.0 2E-185 5E-190 1677.5 65.6 660 210-879 1-671 (671)
5 cd01380 MYSc_type_V Myosin mot 100.0 6E-185 1E-189 1681.1 66.7 669 210-879 1-691 (691)
6 cd01377 MYSc_type_II Myosin mo 100.0 8E-185 2E-189 1680.4 67.8 672 205-879 1-693 (693)
7 KOG0161 Myosin class II heavy 100.0 4E-184 8E-189 1749.5 71.9 769 158-930 30-823 (1930)
8 cd01384 MYSc_type_XI Myosin mo 100.0 6E-184 1E-188 1663.4 65.7 659 209-882 1-673 (674)
9 cd01378 MYSc_type_I Myosin mot 100.0 2E-183 4E-188 1664.6 64.8 657 210-879 1-674 (674)
10 cd01387 MYSc_type_XV Myosin mo 100.0 5E-183 1E-187 1658.8 65.9 668 209-879 1-677 (677)
11 cd01385 MYSc_type_IX Myosin mo 100.0 7E-182 2E-186 1651.9 66.5 669 208-880 6-689 (692)
12 cd01382 MYSc_type_VI Myosin mo 100.0 2E-181 5E-186 1652.6 66.1 664 208-879 3-716 (717)
13 KOG0164 Myosin class I heavy c 100.0 1E-179 3E-184 1519.8 55.5 701 208-923 7-735 (1001)
14 smart00242 MYSc Myosin. Large 100.0 8E-179 2E-183 1630.2 65.5 665 204-880 1-677 (677)
15 cd01379 MYSc_type_III Myosin m 100.0 1E-177 2E-182 1603.8 63.8 635 210-879 1-653 (653)
16 cd00124 MYSc Myosin motor doma 100.0 6E-177 1E-181 1617.8 65.8 669 210-879 1-679 (679)
17 cd01386 MYSc_type_XVIII Myosin 100.0 7E-176 2E-180 1606.8 64.8 666 211-879 2-767 (767)
18 KOG0162 Myosin class I heavy c 100.0 1E-175 3E-180 1486.2 49.7 706 207-930 16-740 (1106)
19 KOG0163 Myosin class VI heavy 100.0 3E-172 6E-177 1458.1 67.2 759 158-926 4-833 (1259)
20 PF00063 Myosin_head: Myosin h 100.0 5E-171 1E-175 1580.2 59.2 658 211-868 1-689 (689)
21 KOG0160 Myosin class V heavy c 100.0 2E-170 5E-175 1527.1 60.1 741 203-962 3-759 (862)
22 KOG4229 Myosin VII, myosin IXB 100.0 3E-113 8E-118 1055.2 25.5 747 203-962 55-847 (1062)
23 cd01363 Motor_domain Myosin an 98.7 1.6E-08 3.5E-13 106.8 6.1 90 276-370 8-98 (186)
24 KOG0161 Myosin class II heavy 98.6 7.8E-06 1.7E-10 109.2 27.7 375 376-829 219-627 (1930)
25 PF02736 Myosin_N: Myosin N-te 98.0 1.4E-05 3.1E-10 63.7 6.8 42 158-199 1-42 (42)
26 KOG4229 Myosin VII, myosin IXB 97.6 1.7E-05 3.7E-10 101.2 0.6 165 755-926 794-960 (1062)
27 KOG0160 Myosin class V heavy c 97.5 0.0025 5.5E-08 80.1 18.0 70 897-967 664-742 (862)
28 PF00612 IQ: IQ calmodulin-bin 97.1 0.00055 1.2E-08 46.3 3.5 20 945-964 2-21 (21)
29 KOG0520 Uncharacterized conser 97.0 0.00059 1.3E-08 85.7 5.2 81 884-964 811-934 (975)
30 PF00612 IQ: IQ calmodulin-bin 96.4 0.0041 9E-08 42.0 3.4 18 885-902 3-20 (21)
31 KOG2128 Ras GTPase-activating 96.1 0.063 1.4E-06 69.8 14.5 135 885-1029 567-707 (1401)
32 KOG0925 mRNA splicing factor A 96.0 0.0055 1.2E-07 71.5 3.7 64 249-318 24-88 (699)
33 smart00015 IQ Short calmodulin 95.7 0.011 2.4E-07 42.1 3.1 21 944-964 3-23 (26)
34 KOG0164 Myosin class I heavy c 95.5 0.021 4.4E-07 69.2 6.3 58 905-964 695-754 (1001)
35 PTZ00014 myosin-A; Provisional 95.4 0.025 5.4E-07 72.4 7.0 42 906-962 777-818 (821)
36 KOG0163 Myosin class VI heavy 95.4 1.4 3.1E-05 54.2 20.6 32 884-915 814-845 (1259)
37 PF13207 AAA_17: AAA domain; P 94.7 0.022 4.7E-07 55.3 2.9 23 295-317 1-23 (121)
38 smart00015 IQ Short calmodulin 94.6 0.035 7.6E-07 39.6 3.0 20 906-925 3-22 (26)
39 PF13401 AAA_22: AAA domain; P 93.5 0.052 1.1E-06 53.2 2.8 29 291-319 2-30 (131)
40 PF13191 AAA_16: AAA ATPase do 93.5 0.057 1.2E-06 56.0 3.2 33 288-320 19-51 (185)
41 COG5022 Myosin heavy chain [Cy 93.5 2.2 4.7E-05 56.7 17.7 70 895-964 734-813 (1463)
42 PF13238 AAA_18: AAA domain; P 93.4 0.052 1.1E-06 52.7 2.7 22 296-317 1-22 (129)
43 cd00009 AAA The AAA+ (ATPases 93.3 0.1 2.3E-06 50.8 4.5 30 289-318 15-44 (151)
44 TIGR02322 phosphon_PhnN phosph 93.0 0.069 1.5E-06 55.8 3.0 25 294-318 2-26 (179)
45 TIGR03015 pepcterm_ATPase puta 93.0 0.092 2E-06 58.4 4.1 28 291-318 41-68 (269)
46 KOG0520 Uncharacterized conser 92.8 0.74 1.6E-05 58.9 12.0 61 885-964 793-853 (975)
47 cd02019 NK Nucleoside/nucleoti 92.7 0.096 2.1E-06 46.2 3.0 22 296-317 2-23 (69)
48 PRK05480 uridine/cytidine kina 92.1 0.13 2.8E-06 55.2 3.8 27 291-317 4-30 (209)
49 KOG2128 Ras GTPase-activating 92.1 1.9 4.2E-05 56.8 14.4 67 887-964 539-612 (1401)
50 PF00004 AAA: ATPase family as 92.1 0.1 2.2E-06 50.9 2.6 23 296-318 1-23 (132)
51 PRK06696 uridine kinase; Valid 92.0 0.2 4.4E-06 54.5 5.1 39 279-319 10-48 (223)
52 cd01131 PilT Pilus retraction 91.9 0.11 2.4E-06 55.5 3.0 25 295-319 3-27 (198)
53 PF01583 APS_kinase: Adenylyls 91.8 0.18 3.9E-06 52.0 4.2 29 293-321 2-30 (156)
54 cd00820 PEPCK_HprK Phosphoenol 91.6 0.14 3.1E-06 49.4 3.0 23 292-314 14-36 (107)
55 smart00382 AAA ATPases associa 91.6 0.12 2.5E-06 49.8 2.4 28 293-320 2-29 (148)
56 PRK13833 conjugal transfer pro 91.6 0.19 4.1E-06 58.0 4.5 35 283-319 136-170 (323)
57 cd01918 HprK_C HprK/P, the bif 91.6 0.14 3.1E-06 52.4 3.1 25 292-316 13-37 (149)
58 PRK00300 gmk guanylate kinase; 91.6 0.12 2.7E-06 55.0 2.8 26 292-317 4-29 (205)
59 PF00485 PRK: Phosphoribulokin 91.5 0.12 2.6E-06 54.9 2.7 26 296-321 2-27 (194)
60 cd01129 PulE-GspE PulE/GspE Th 91.5 0.2 4.3E-06 56.2 4.4 36 283-319 71-106 (264)
61 cd02023 UMPK Uridine monophosp 91.4 0.14 3E-06 54.5 2.9 22 296-317 2-23 (198)
62 COG0444 DppD ABC-type dipeptid 91.4 0.12 2.6E-06 58.7 2.5 28 291-318 29-56 (316)
63 TIGR00235 udk uridine kinase. 91.4 0.17 3.7E-06 54.4 3.6 28 291-318 4-31 (207)
64 TIGR00150 HI0065_YjeE ATPase, 91.3 0.28 6.1E-06 49.3 4.9 27 291-317 20-46 (133)
65 COG0194 Gmk Guanylate kinase [ 91.2 0.14 3E-06 54.0 2.6 25 293-317 4-28 (191)
66 PRK05541 adenylylsulfate kinas 91.2 0.17 3.6E-06 52.8 3.3 29 291-319 5-33 (176)
67 PRK08233 hypothetical protein; 91.1 0.13 2.8E-06 53.4 2.4 25 294-318 4-28 (182)
68 PRK09270 nucleoside triphospha 90.9 0.57 1.2E-05 51.3 7.2 35 289-323 29-63 (229)
69 PRK06762 hypothetical protein; 90.9 0.2 4.3E-06 51.6 3.4 25 293-317 2-26 (166)
70 TIGR03420 DnaA_homol_Hda DnaA 90.8 0.33 7.2E-06 52.4 5.3 38 282-319 27-64 (226)
71 TIGR02173 cyt_kin_arch cytidyl 90.8 0.16 3.5E-06 52.2 2.7 23 295-317 2-24 (171)
72 cd02020 CMPK Cytidine monophos 90.8 0.18 3.9E-06 50.3 2.9 22 296-317 2-23 (147)
73 PF09755 DUF2046: Uncharacteri 90.7 29 0.00062 39.7 20.2 57 1017-1073 143-203 (310)
74 PRK06547 hypothetical protein; 90.6 0.35 7.7E-06 50.7 5.0 28 290-317 12-39 (172)
75 PTZ00301 uridine kinase; Provi 90.6 0.19 4.1E-06 54.5 3.0 24 295-318 5-28 (210)
76 cd02028 UMPK_like Uridine mono 90.4 0.2 4.4E-06 52.7 3.0 24 296-319 2-25 (179)
77 PRK07261 topology modulation p 90.3 0.2 4.3E-06 52.4 2.8 22 295-316 2-23 (171)
78 cd02025 PanK Pantothenate kina 90.3 0.2 4.4E-06 54.6 3.0 24 296-319 2-25 (220)
79 PRK00131 aroK shikimate kinase 90.2 0.24 5.2E-06 50.9 3.3 26 292-317 3-28 (175)
80 cd00227 CPT Chloramphenicol (C 90.0 0.24 5.3E-06 51.7 3.3 25 293-317 2-26 (175)
81 PRK08118 topology modulation p 89.9 0.24 5.2E-06 51.6 3.1 25 294-318 2-26 (167)
82 PF07724 AAA_2: AAA domain (Cd 89.9 0.26 5.7E-06 51.6 3.4 24 295-318 5-28 (171)
83 PRK07196 fliI flagellum-specif 89.9 0.4 8.7E-06 57.3 5.3 42 275-316 137-178 (434)
84 cd01130 VirB11-like_ATPase Typ 89.9 0.21 4.5E-06 52.9 2.6 26 293-318 25-50 (186)
85 PRK08084 DNA replication initi 89.9 0.46 1E-05 52.3 5.4 40 280-319 32-71 (235)
86 PF12846 AAA_10: AAA-like doma 89.9 0.26 5.6E-06 55.1 3.5 30 293-322 1-30 (304)
87 PF13245 AAA_19: Part of AAA d 89.8 0.37 8E-06 43.6 3.8 28 292-319 9-36 (76)
88 PF05729 NACHT: NACHT domain 89.8 0.27 5.9E-06 49.7 3.3 27 295-321 2-28 (166)
89 TIGR02928 orc1/cdc6 family rep 89.5 0.35 7.6E-06 56.3 4.4 37 283-319 30-66 (365)
90 COG4026 Uncharacterized protei 89.5 5.8 0.00013 42.6 12.6 53 999-1051 160-212 (290)
91 PRK00889 adenylylsulfate kinas 89.4 0.41 8.9E-06 49.8 4.3 29 292-320 3-31 (175)
92 PF03668 ATP_bind_2: P-loop AT 89.3 0.24 5.3E-06 55.6 2.7 20 294-313 2-21 (284)
93 TIGR01420 pilT_fam pilus retra 89.3 0.25 5.4E-06 57.5 2.9 35 284-319 114-148 (343)
94 PRK14737 gmk guanylate kinase; 89.3 0.25 5.4E-06 52.5 2.6 25 293-317 4-28 (186)
95 PRK10078 ribose 1,5-bisphospho 89.2 0.22 4.8E-06 52.6 2.2 23 294-316 3-25 (186)
96 PF00910 RNA_helicase: RNA hel 89.1 0.3 6.5E-06 46.9 2.8 24 296-319 1-24 (107)
97 TIGR01313 therm_gnt_kin carboh 89.1 0.22 4.8E-06 51.1 2.1 23 296-318 1-23 (163)
98 TIGR02782 TrbB_P P-type conjug 89.0 0.29 6.3E-06 55.9 3.2 34 284-319 125-158 (299)
99 PRK10884 SH3 domain-containing 89.0 2.1 4.5E-05 46.3 9.4 53 1000-1052 116-168 (206)
100 cd00071 GMPK Guanosine monopho 89.0 0.24 5.3E-06 49.8 2.2 22 296-317 2-23 (137)
101 PRK13851 type IV secretion sys 88.9 0.33 7.1E-06 56.5 3.5 26 293-318 162-187 (344)
102 PRK14738 gmk guanylate kinase; 88.9 0.31 6.6E-06 52.5 3.1 26 291-316 11-36 (206)
103 cd02024 NRK1 Nicotinamide ribo 88.9 0.27 5.9E-06 52.3 2.6 22 296-317 2-23 (187)
104 PRK14961 DNA polymerase III su 88.8 0.55 1.2E-05 55.1 5.3 53 263-319 7-64 (363)
105 cd02027 APSK Adenosine 5'-phos 88.6 0.34 7.4E-06 49.4 3.0 24 296-319 2-25 (149)
106 PF03266 NTPase_1: NTPase; In 88.5 0.34 7.4E-06 50.7 3.0 24 296-319 2-25 (168)
107 TIGR02524 dot_icm_DotB Dot/Icm 88.5 0.31 6.8E-06 57.0 3.0 29 292-320 133-161 (358)
108 PRK03846 adenylylsulfate kinas 88.5 0.6 1.3E-05 49.8 4.9 33 289-321 20-52 (198)
109 PRK06217 hypothetical protein; 88.4 0.31 6.7E-06 51.3 2.6 23 295-317 3-25 (183)
110 PRK13900 type IV secretion sys 88.4 0.44 9.5E-06 55.3 4.0 31 286-318 155-185 (332)
111 cd01120 RecA-like_NTPases RecA 88.4 0.41 8.8E-06 48.0 3.4 25 296-320 2-26 (165)
112 PF00437 T2SE: Type II/IV secr 88.4 0.27 6E-06 54.9 2.3 28 292-319 126-153 (270)
113 TIGR00554 panK_bact pantothena 88.3 0.6 1.3E-05 53.1 5.0 31 290-320 59-89 (290)
114 PRK12377 putative replication 88.2 0.7 1.5E-05 51.4 5.4 46 274-321 84-129 (248)
115 PRK10751 molybdopterin-guanine 88.1 0.39 8.5E-06 50.4 3.1 28 294-321 7-34 (173)
116 TIGR02525 plasmid_TraJ plasmid 88.1 0.35 7.6E-06 56.9 3.0 27 293-319 149-175 (372)
117 PF13671 AAA_33: AAA domain; P 88.0 0.28 6.1E-06 48.8 2.0 23 296-318 2-24 (143)
118 KOG0995 Centromere-associated 88.0 76 0.0016 39.1 22.4 29 805-836 129-158 (581)
119 TIGR03263 guanyl_kin guanylate 88.0 0.28 6.1E-06 51.1 1.9 24 294-317 2-25 (180)
120 COG1660 Predicted P-loop-conta 88.0 0.31 6.8E-06 53.7 2.3 24 295-318 3-28 (286)
121 COG1125 OpuBA ABC-type proline 87.9 0.32 6.9E-06 53.7 2.3 26 294-319 28-53 (309)
122 PF06005 DUF904: Protein of un 87.7 11 0.00023 34.0 11.5 48 1005-1052 7-54 (72)
123 PRK08903 DnaA regulatory inact 87.7 0.91 2E-05 49.3 5.8 31 291-321 40-70 (227)
124 cd00464 SK Shikimate kinase (S 87.6 0.39 8.5E-06 48.4 2.7 24 295-318 1-24 (154)
125 PF03205 MobB: Molybdopterin g 87.5 0.46 1E-05 48.1 3.1 27 295-321 2-28 (140)
126 TIGR01360 aden_kin_iso1 adenyl 87.4 0.44 9.5E-06 49.8 3.0 23 295-317 5-27 (188)
127 PRK00411 cdc6 cell division co 87.2 0.65 1.4E-05 54.8 4.7 36 284-319 46-81 (394)
128 PRK00440 rfc replication facto 87.1 0.81 1.8E-05 52.1 5.2 37 282-318 27-63 (319)
129 COG0572 Udk Uridine kinase [Nu 86.9 0.46 1E-05 51.5 2.9 23 296-318 11-33 (218)
130 COG0529 CysC Adenylylsulfate k 86.9 0.86 1.9E-05 47.8 4.7 43 278-321 9-51 (197)
131 COG1102 Cmk Cytidylate kinase 86.9 0.49 1.1E-05 48.8 2.9 23 296-318 3-25 (179)
132 PRK07667 uridine kinase; Provi 86.8 0.94 2E-05 48.2 5.2 27 294-320 18-44 (193)
133 cd02021 GntK Gluconate kinase 86.8 0.44 9.5E-06 48.1 2.5 21 296-316 2-22 (150)
134 PHA02544 44 clamp loader, smal 86.8 0.65 1.4E-05 53.1 4.2 35 283-317 32-67 (316)
135 PRK12402 replication factor C 86.7 0.79 1.7E-05 52.6 4.9 33 287-319 30-62 (337)
136 PRK04182 cytidylate kinase; Pr 86.7 0.45 9.8E-06 49.2 2.6 23 295-317 2-24 (180)
137 PRK13764 ATPase; Provisional 86.6 0.59 1.3E-05 58.1 3.9 27 293-319 257-283 (602)
138 PRK08727 hypothetical protein; 86.5 0.97 2.1E-05 49.7 5.3 32 290-321 38-69 (233)
139 PRK06893 DNA replication initi 86.4 1.2 2.6E-05 48.8 5.8 46 274-321 22-67 (229)
140 COG4608 AppF ABC-type oligopep 86.3 0.46 9.9E-06 53.0 2.5 32 291-322 37-68 (268)
141 COG0563 Adk Adenylate kinase a 86.2 0.54 1.2E-05 49.6 2.9 22 296-317 3-24 (178)
142 TIGR02533 type_II_gspE general 86.2 0.63 1.4E-05 56.8 3.8 35 283-318 233-267 (486)
143 PRK14527 adenylate kinase; Pro 86.2 0.61 1.3E-05 49.4 3.3 28 291-318 4-31 (191)
144 PRK04040 adenylate kinase; Pro 86.0 0.62 1.3E-05 49.6 3.3 25 294-318 3-27 (188)
145 PRK05057 aroK shikimate kinase 86.0 0.58 1.3E-05 48.9 3.0 25 293-317 4-28 (172)
146 PHA00729 NTP-binding motif con 85.6 1.2 2.5E-05 48.9 5.1 38 280-318 5-42 (226)
147 cd03115 SRP The signal recogni 85.6 0.77 1.7E-05 47.6 3.7 27 295-321 2-28 (173)
148 PRK12608 transcription termina 85.6 0.7 1.5E-05 54.1 3.6 42 278-319 118-159 (380)
149 PRK14964 DNA polymerase III su 85.5 0.94 2E-05 55.1 4.8 56 263-321 4-63 (491)
150 cd02029 PRK_like Phosphoribulo 85.4 0.7 1.5E-05 51.8 3.4 24 296-319 2-25 (277)
151 PRK09825 idnK D-gluconate kina 85.3 0.67 1.5E-05 48.7 3.1 26 293-318 3-28 (176)
152 PRK13894 conjugal transfer ATP 84.9 0.66 1.4E-05 53.5 3.0 27 293-319 148-174 (319)
153 PRK14956 DNA polymerase III su 84.8 0.99 2.1E-05 54.6 4.5 53 264-320 10-67 (484)
154 TIGR01359 UMP_CMP_kin_fam UMP- 84.8 0.67 1.5E-05 48.4 2.8 23 296-318 2-24 (183)
155 COG3883 Uncharacterized protei 84.8 7.9 0.00017 43.3 11.1 68 995-1062 45-112 (265)
156 PRK00698 tmk thymidylate kinas 84.8 0.94 2E-05 48.0 4.0 28 293-320 3-30 (205)
157 TIGR00176 mobB molybdopterin-g 84.8 0.83 1.8E-05 47.1 3.4 26 296-321 2-27 (155)
158 PRK14730 coaE dephospho-CoA ki 84.8 0.96 2.1E-05 48.4 4.0 49 296-344 4-57 (195)
159 PRK11637 AmiB activator; Provi 84.7 8.7 0.00019 46.2 12.6 61 1005-1065 71-131 (428)
160 PF13555 AAA_29: P-loop contai 84.7 0.97 2.1E-05 39.4 3.2 21 295-315 25-45 (62)
161 PF03193 DUF258: Protein of un 84.7 0.42 9.1E-06 49.6 1.2 25 292-316 34-58 (161)
162 PF06005 DUF904: Protein of un 84.6 18 0.0004 32.6 11.3 49 1000-1048 16-64 (72)
163 KOG1029 Endocytic adaptor prot 84.5 61 0.0013 41.0 19.0 11 463-473 50-60 (1118)
164 PF07475 Hpr_kinase_C: HPr Ser 84.5 0.67 1.5E-05 48.4 2.6 23 293-315 18-40 (171)
165 COG1124 DppF ABC-type dipeptid 84.4 0.72 1.6E-05 50.7 2.8 29 291-319 31-59 (252)
166 TIGR03499 FlhF flagellar biosy 84.4 0.89 1.9E-05 51.5 3.8 45 276-320 169-221 (282)
167 PRK05416 glmZ(sRNA)-inactivati 84.3 0.67 1.5E-05 52.7 2.7 21 293-313 6-26 (288)
168 PRK06761 hypothetical protein; 84.3 0.66 1.4E-05 52.5 2.6 26 294-319 4-29 (282)
169 PF02367 UPF0079: Uncharacteri 84.3 0.78 1.7E-05 45.5 2.8 27 291-317 13-39 (123)
170 KOG0804 Cytoplasmic Zn-finger 84.2 12 0.00027 44.2 12.6 70 996-1065 376-445 (493)
171 PRK06645 DNA polymerase III su 84.2 1.2 2.6E-05 54.5 5.0 45 273-320 26-70 (507)
172 PF07728 AAA_5: AAA domain (dy 84.0 0.75 1.6E-05 45.8 2.7 22 296-317 2-23 (139)
173 PRK14974 cell division protein 84.0 1.7 3.7E-05 50.5 5.8 31 291-321 138-168 (336)
174 PF00308 Bac_DnaA: Bacterial d 84.0 1.7 3.7E-05 47.3 5.6 43 279-321 18-62 (219)
175 COG4172 ABC-type uncharacteriz 83.9 0.57 1.2E-05 54.6 1.9 28 293-320 36-63 (534)
176 PRK08356 hypothetical protein; 83.9 0.68 1.5E-05 49.3 2.4 22 294-315 6-27 (195)
177 COG4172 ABC-type uncharacteriz 83.8 0.64 1.4E-05 54.3 2.2 31 290-320 310-340 (534)
178 COG1123 ATPase components of v 83.8 0.59 1.3E-05 56.9 2.1 29 292-320 34-62 (539)
179 PRK09111 DNA polymerase III su 83.7 1.1 2.4E-05 55.9 4.5 37 284-320 36-73 (598)
180 TIGR00455 apsK adenylylsulfate 83.7 1.3 2.8E-05 46.5 4.4 29 291-319 16-44 (184)
181 PRK08116 hypothetical protein; 83.7 1.6 3.6E-05 49.0 5.5 48 274-321 94-142 (268)
182 PF00625 Guanylate_kin: Guanyl 83.6 0.88 1.9E-05 47.9 3.1 25 294-318 3-27 (183)
183 COG0802 Predicted ATPase or ki 83.6 1.9 4E-05 44.2 5.2 29 291-319 23-51 (149)
184 PRK15453 phosphoribulokinase; 83.5 0.91 2E-05 51.3 3.3 26 292-317 4-29 (290)
185 PRK15093 antimicrobial peptide 83.5 0.79 1.7E-05 53.1 2.9 27 291-317 31-57 (330)
186 cd03293 ABC_NrtD_SsuB_transpor 83.5 0.79 1.7E-05 49.6 2.8 26 291-316 28-53 (220)
187 COG1123 ATPase components of v 83.5 0.61 1.3E-05 56.8 2.0 28 292-319 316-343 (539)
188 PRK14528 adenylate kinase; Pro 83.4 0.94 2E-05 48.0 3.2 24 294-317 2-25 (186)
189 PF04665 Pox_A32: Poxvirus A32 83.4 0.82 1.8E-05 50.5 2.8 27 293-319 13-39 (241)
190 PRK14531 adenylate kinase; Pro 83.4 0.96 2.1E-05 47.7 3.3 24 294-317 3-26 (183)
191 PRK03839 putative kinase; Prov 83.4 0.87 1.9E-05 47.6 2.9 23 295-317 2-24 (180)
192 PRK14957 DNA polymerase III su 83.3 1.4 3.1E-05 54.3 5.1 55 263-320 7-65 (546)
193 cd01983 Fer4_NifH The Fer4_Nif 83.3 1.2 2.6E-05 40.4 3.5 26 296-321 2-27 (99)
194 TIGR01166 cbiO cobalt transpor 83.3 0.87 1.9E-05 48.0 2.9 25 291-315 16-40 (190)
195 cd03116 MobB Molybdenum is an 83.2 1.2 2.6E-05 46.2 3.8 28 294-321 2-29 (159)
196 PRK13342 recombination factor 83.2 1.2 2.7E-05 53.1 4.5 42 274-316 18-59 (413)
197 TIGR02673 FtsE cell division A 83.2 0.86 1.9E-05 49.0 2.9 26 291-316 26-51 (214)
198 PRK11308 dppF dipeptide transp 83.1 0.83 1.8E-05 52.9 2.9 27 291-317 39-65 (327)
199 TIGR00960 3a0501s02 Type II (G 83.1 0.87 1.9E-05 49.1 2.9 26 291-316 27-52 (216)
200 KOG0924 mRNA splicing factor A 83.1 1.3 2.8E-05 54.4 4.4 113 276-394 357-482 (1042)
201 TIGR02788 VirB11 P-type DNA tr 83.1 0.68 1.5E-05 53.1 2.1 26 293-318 144-169 (308)
202 TIGR02881 spore_V_K stage V sp 83.0 1.2 2.5E-05 49.8 4.0 31 291-321 40-70 (261)
203 TIGR03574 selen_PSTK L-seryl-t 83.0 0.89 1.9E-05 50.3 3.0 24 296-319 2-25 (249)
204 cd01672 TMPK Thymidine monopho 82.9 1.1 2.3E-05 47.0 3.4 24 296-319 3-26 (200)
205 PF00005 ABC_tran: ABC transpo 82.9 0.78 1.7E-05 45.4 2.2 26 292-317 10-35 (137)
206 PHA02530 pseT polynucleotide k 82.9 0.86 1.9E-05 51.7 2.9 24 294-317 3-26 (300)
207 COG2884 FtsE Predicted ATPase 82.8 0.85 1.8E-05 48.4 2.5 24 293-316 28-51 (223)
208 PRK10416 signal recognition pa 82.8 1.3 2.7E-05 51.2 4.2 32 291-322 112-143 (318)
209 PRK14732 coaE dephospho-CoA ki 82.8 0.85 1.8E-05 48.9 2.6 45 296-344 2-54 (196)
210 PRK15177 Vi polysaccharide exp 82.7 0.92 2E-05 49.0 2.9 28 291-318 11-38 (213)
211 PRK14962 DNA polymerase III su 82.6 1.4 3.1E-05 53.5 4.7 52 264-319 6-62 (472)
212 PRK14733 coaE dephospho-CoA ki 82.6 1.1 2.3E-05 48.5 3.3 51 294-344 7-61 (204)
213 cd03225 ABC_cobalt_CbiO_domain 82.6 0.97 2.1E-05 48.4 3.0 27 291-317 25-51 (211)
214 COG2805 PilT Tfp pilus assembl 82.6 0.98 2.1E-05 51.0 3.0 74 234-319 70-151 (353)
215 cd03259 ABC_Carb_Solutes_like 82.6 0.97 2.1E-05 48.6 3.0 27 291-317 24-50 (213)
216 TIGR00064 ftsY signal recognit 82.6 2.3 4.9E-05 48.1 6.0 46 276-321 46-100 (272)
217 PRK10436 hypothetical protein; 82.5 0.88 1.9E-05 55.1 2.9 37 282-319 208-244 (462)
218 PRK09473 oppD oligopeptide tra 82.5 0.85 1.8E-05 52.9 2.6 27 291-317 40-66 (330)
219 cd01124 KaiC KaiC is a circadi 82.5 1.1 2.4E-05 46.7 3.3 27 295-321 1-27 (187)
220 TIGR02902 spore_lonB ATP-depen 82.5 1.5 3.3E-05 54.2 4.9 30 288-317 81-110 (531)
221 PRK15079 oligopeptide ABC tran 82.4 0.92 2E-05 52.6 2.9 27 291-317 45-71 (331)
222 cd02034 CooC The accessory pro 82.3 1.3 2.8E-05 43.5 3.4 26 296-321 2-27 (116)
223 cd03255 ABC_MJ0796_Lo1CDE_FtsE 82.3 0.99 2.1E-05 48.6 2.9 27 291-317 28-54 (218)
224 PRK13768 GTPase; Provisional 82.2 1.2 2.5E-05 49.8 3.5 27 295-321 4-30 (253)
225 cd03260 ABC_PstB_phosphate_tra 82.2 1 2.2E-05 48.9 3.0 27 291-317 24-50 (227)
226 PRK09112 DNA polymerase III su 82.1 1.7 3.7E-05 50.8 5.0 41 279-319 30-71 (351)
227 cd03292 ABC_FtsE_transporter F 82.0 1 2.2E-05 48.3 2.9 26 291-316 25-50 (214)
228 TIGR00678 holB DNA polymerase 82.0 1.6 3.4E-05 46.0 4.3 37 284-320 4-41 (188)
229 TIGR02868 CydC thiol reductant 82.0 0.66 1.4E-05 57.1 1.6 28 291-318 359-386 (529)
230 TIGR03608 L_ocin_972_ABC putat 81.9 1 2.2E-05 48.0 2.9 24 292-315 23-46 (206)
231 PRK11022 dppD dipeptide transp 81.9 0.96 2.1E-05 52.3 2.8 27 291-317 31-57 (326)
232 PLN03025 replication factor C 81.9 1.8 3.9E-05 49.9 5.0 36 283-318 24-59 (319)
233 PRK04220 2-phosphoglycerate ki 81.9 1.6 3.4E-05 49.8 4.4 28 290-317 89-116 (301)
234 cd03296 ABC_CysA_sulfate_impor 81.8 1 2.2E-05 49.3 2.9 26 291-316 26-51 (239)
235 COG1493 HprK Serine kinase of 81.8 1.1 2.4E-05 50.6 3.0 25 293-317 145-169 (308)
236 KOG4005 Transcription factor X 81.8 26 0.00056 38.2 12.9 55 1001-1055 89-143 (292)
237 cd03229 ABC_Class3 This class 81.8 1.1 2.4E-05 46.9 3.0 27 291-317 24-50 (178)
238 TIGR02880 cbbX_cfxQ probable R 81.7 1.2 2.5E-05 50.6 3.3 27 295-321 60-86 (284)
239 cd03258 ABC_MetN_methionine_tr 81.6 0.75 1.6E-05 50.2 1.7 27 291-317 29-55 (233)
240 PF12718 Tropomyosin_1: Tropom 81.6 18 0.00039 36.9 11.5 65 1004-1068 75-142 (143)
241 PRK14963 DNA polymerase III su 81.6 1.5 3.3E-05 53.7 4.5 45 273-320 19-63 (504)
242 PRK14969 DNA polymerase III su 81.6 1.7 3.7E-05 53.6 4.9 52 264-319 8-64 (527)
243 smart00072 GuKc Guanylate kina 81.5 1 2.2E-05 47.5 2.6 23 295-317 4-26 (184)
244 PRK06620 hypothetical protein; 81.5 1.8 3.9E-05 47.0 4.6 20 294-313 45-64 (214)
245 PRK09087 hypothetical protein; 81.5 1.7 3.8E-05 47.6 4.5 24 292-315 43-66 (226)
246 PRK02496 adk adenylate kinase; 81.5 1.1 2.5E-05 46.9 3.0 22 296-317 4-25 (184)
247 PF01695 IstB_IS21: IstB-like 81.4 2.1 4.5E-05 45.2 4.9 30 291-320 45-74 (178)
248 COG2204 AtoC Response regulato 81.4 1.5 3.2E-05 52.8 4.2 64 291-359 162-232 (464)
249 cd03224 ABC_TM1139_LivF_branch 81.3 1.1 2.5E-05 48.2 3.0 25 291-315 24-48 (222)
250 PRK09039 hypothetical protein; 81.2 1.2E+02 0.0026 35.6 20.2 51 998-1048 119-169 (343)
251 cd02026 PRK Phosphoribulokinas 81.2 1.1 2.4E-05 50.6 2.9 22 296-317 2-23 (273)
252 cd03235 ABC_Metallic_Cations A 81.2 1 2.3E-05 48.3 2.6 26 291-316 23-48 (213)
253 PRK00023 cmk cytidylate kinase 81.2 1.2 2.5E-05 48.8 3.0 26 293-318 4-29 (225)
254 TIGR02449 conserved hypothetic 81.1 15 0.00032 32.4 9.1 56 1006-1061 4-59 (65)
255 PF08317 Spc7: Spc7 kinetochor 80.9 83 0.0018 36.5 18.2 75 994-1068 208-289 (325)
256 COG2274 SunT ABC-type bacterio 80.9 1 2.3E-05 57.2 2.8 28 292-319 498-525 (709)
257 TIGR00152 dephospho-CoA kinase 80.9 1.4 3E-05 46.5 3.4 46 296-342 2-53 (188)
258 TIGR03864 PQQ_ABC_ATP ABC tran 80.9 1.2 2.6E-05 48.8 2.9 26 291-316 25-50 (236)
259 PF13479 AAA_24: AAA domain 80.9 1 2.2E-05 48.8 2.4 23 291-313 1-23 (213)
260 PLN02796 D-glycerate 3-kinase 80.8 1.2 2.5E-05 51.8 2.9 25 294-318 101-125 (347)
261 PRK07003 DNA polymerase III su 80.8 3.3 7.2E-05 52.6 7.0 54 263-320 7-65 (830)
262 cd03297 ABC_ModC_molybdenum_tr 80.8 1.2 2.6E-05 47.9 2.9 26 291-317 22-47 (214)
263 cd03256 ABC_PhnC_transporter A 80.7 1.2 2.6E-05 48.8 2.9 27 291-317 25-51 (241)
264 PF00158 Sigma54_activat: Sigm 80.6 1.2 2.5E-05 46.6 2.7 25 291-315 20-44 (168)
265 PRK03731 aroL shikimate kinase 80.6 1.3 2.9E-05 45.7 3.1 25 294-318 3-27 (171)
266 COG4619 ABC-type uncharacteriz 80.6 1.1 2.5E-05 46.6 2.4 24 292-315 28-51 (223)
267 PF01637 Arch_ATPase: Archaeal 80.6 1.1 2.3E-05 48.0 2.4 34 284-317 11-44 (234)
268 PRK09099 type III secretion sy 80.6 4.7 0.0001 48.5 8.0 39 278-316 148-186 (441)
269 TIGR02315 ABC_phnC phosphonate 80.5 1.2 2.6E-05 48.8 2.9 26 291-316 26-51 (243)
270 PRK11637 AmiB activator; Provi 80.5 26 0.00057 42.1 14.5 66 997-1062 70-135 (428)
271 KOG0971 Microtubule-associated 80.5 28 0.0006 44.5 14.4 16 1020-1035 372-387 (1243)
272 PTZ00112 origin recognition co 80.5 2.4 5.2E-05 54.4 5.6 38 282-319 769-807 (1164)
273 cd03268 ABC_BcrA_bacitracin_re 80.5 1.3 2.7E-05 47.5 3.0 26 291-316 24-49 (208)
274 PRK05342 clpX ATP-dependent pr 80.5 1.9 4.1E-05 51.5 4.7 61 257-317 59-132 (412)
275 COG2804 PulE Type II secretory 80.5 1.2 2.6E-05 53.6 3.0 40 280-320 246-285 (500)
276 PF06785 UPF0242: Uncharacteri 80.5 20 0.00044 40.8 12.1 38 1002-1039 141-178 (401)
277 PLN02318 phosphoribulokinase/u 80.4 1.9 4.1E-05 53.3 4.6 44 274-317 45-89 (656)
278 cd03219 ABC_Mj1267_LivG_branch 80.4 1.2 2.6E-05 48.6 2.7 25 291-315 24-48 (236)
279 PRK11176 lipid transporter ATP 80.3 0.98 2.1E-05 56.3 2.3 28 291-318 367-394 (582)
280 PF01580 FtsK_SpoIIIE: FtsK/Sp 80.3 1.3 2.9E-05 47.2 3.0 25 295-319 40-64 (205)
281 cd03223 ABCD_peroxisomal_ALDP 80.2 1.3 2.9E-05 45.8 2.9 28 291-318 25-52 (166)
282 cd03265 ABC_DrrA DrrA is the A 80.2 1.3 2.8E-05 47.9 3.0 25 291-315 24-48 (220)
283 PRK14959 DNA polymerase III su 80.1 1.9 4.1E-05 53.8 4.6 53 263-319 7-64 (624)
284 PRK14950 DNA polymerase III su 80.1 2 4.4E-05 53.7 5.0 54 264-320 8-65 (585)
285 PRK14530 adenylate kinase; Pro 80.1 1.3 2.9E-05 47.8 3.0 24 295-318 5-28 (215)
286 PRK11124 artP arginine transpo 80.0 1.3 2.8E-05 48.6 2.9 25 291-315 26-50 (242)
287 cd03266 ABC_NatA_sodium_export 80.0 1.3 2.9E-05 47.6 2.9 25 291-315 29-53 (218)
288 PRK10646 ADP-binding protein; 80.0 3 6.5E-05 43.0 5.3 26 293-318 28-53 (153)
289 TIGR01184 ntrCD nitrate transp 80.0 1.3 2.9E-05 48.4 2.9 26 292-317 10-35 (230)
290 PF06414 Zeta_toxin: Zeta toxi 80.0 1.4 3.1E-05 47.0 3.2 30 289-318 11-40 (199)
291 cd03262 ABC_HisP_GlnQ_permease 79.9 1.3 2.9E-05 47.4 2.9 26 291-316 24-49 (213)
292 COG1126 GlnQ ABC-type polar am 79.9 1.3 2.9E-05 47.9 2.8 22 292-313 27-48 (240)
293 TIGR02903 spore_lon_C ATP-depe 79.9 2.3 4.9E-05 53.6 5.3 34 286-319 168-201 (615)
294 cd03269 ABC_putative_ATPase Th 79.9 1.4 3E-05 47.3 3.0 25 291-315 24-48 (210)
295 PF13173 AAA_14: AAA domain 79.9 1.6 3.4E-05 43.2 3.2 26 293-318 2-27 (128)
296 TIGR02538 type_IV_pilB type IV 79.9 1.2 2.6E-05 55.4 2.9 26 293-318 316-341 (564)
297 PRK04195 replication factor C 79.9 1.7 3.8E-05 53.0 4.2 28 290-317 36-63 (482)
298 PRK10908 cell division protein 79.8 1.4 2.9E-05 47.8 2.9 25 291-315 26-50 (222)
299 PRK13539 cytochrome c biogenes 79.8 1.4 3E-05 47.4 2.9 25 291-315 26-50 (207)
300 cd03226 ABC_cobalt_CbiO_domain 79.8 1.3 2.9E-05 47.3 2.8 25 291-315 24-48 (205)
301 PF00448 SRP54: SRP54-type pro 79.8 1.5 3.4E-05 46.9 3.3 28 293-320 1-28 (196)
302 TIGR00972 3a0107s01c2 phosphat 79.7 1.3 2.9E-05 48.7 2.9 26 291-316 25-50 (247)
303 PRK05439 pantothenate kinase; 79.7 2.7 5.9E-05 48.3 5.4 31 290-320 83-113 (311)
304 PRK13947 shikimate kinase; Pro 79.7 1.5 3.3E-05 45.2 3.1 23 295-317 3-25 (171)
305 PRK13695 putative NTPase; Prov 79.6 1.5 3.2E-05 45.7 3.1 24 296-319 3-26 (174)
306 cd03245 ABCC_bacteriocin_expor 79.6 1.4 3E-05 47.6 2.9 25 291-315 28-52 (220)
307 cd03230 ABC_DR_subfamily_A Thi 79.5 1.4 3.1E-05 45.8 2.9 26 291-316 24-49 (173)
308 PRK06526 transposase; Provisio 79.5 1.6 3.4E-05 48.8 3.4 30 292-321 97-126 (254)
309 cd03270 ABC_UvrA_I The excisio 79.5 1.4 3E-05 48.1 2.9 22 291-312 19-40 (226)
310 COG1618 Predicted nucleotide k 79.4 1.7 3.8E-05 45.0 3.3 53 294-377 6-58 (179)
311 PRK05537 bifunctional sulfate 79.4 2.4 5.3E-05 52.7 5.3 44 274-319 375-418 (568)
312 TIGR01978 sufC FeS assembly AT 79.4 1.4 3E-05 48.3 2.9 26 291-316 24-49 (243)
313 PRK05428 HPr kinase/phosphoryl 79.4 1.4 3E-05 50.4 2.9 24 293-316 146-169 (308)
314 TIGR02640 gas_vesic_GvpN gas v 79.4 2.2 4.8E-05 47.7 4.6 40 274-316 5-44 (262)
315 TIGR03410 urea_trans_UrtE urea 79.4 1.4 3E-05 48.0 2.9 27 291-317 24-50 (230)
316 TIGR00041 DTMP_kinase thymidyl 79.3 1.7 3.7E-05 45.8 3.4 27 293-319 3-29 (195)
317 COG3883 Uncharacterized protei 79.3 22 0.00048 39.8 12.0 78 994-1071 37-114 (265)
318 PRK05896 DNA polymerase III su 79.3 2.4 5.3E-05 52.7 5.1 54 263-320 7-65 (605)
319 PRK08154 anaerobic benzoate ca 79.3 2.3 4.9E-05 48.9 4.7 42 276-317 116-157 (309)
320 PLN02348 phosphoribulokinase 79.2 2.4 5.2E-05 50.0 4.8 29 291-319 47-75 (395)
321 cd03218 ABC_YhbG The ABC trans 79.2 1.5 3.2E-05 47.8 3.0 26 291-316 24-49 (232)
322 TIGR00017 cmk cytidylate kinas 79.2 1.6 3.4E-05 47.6 3.2 24 295-318 4-27 (217)
323 PRK10584 putative ABC transpor 79.2 1.5 3.1E-05 47.7 2.9 26 291-316 34-59 (228)
324 COG3074 Uncharacterized protei 79.1 32 0.00068 30.5 10.2 33 1017-1049 26-58 (79)
325 COG1136 SalX ABC-type antimicr 79.1 1.3 2.8E-05 48.6 2.4 22 292-313 30-51 (226)
326 cd03238 ABC_UvrA The excision 79.1 1.5 3.3E-05 46.2 2.9 24 291-314 19-42 (176)
327 TIGR02211 LolD_lipo_ex lipopro 79.1 1.5 3.2E-05 47.4 2.9 25 291-315 29-53 (221)
328 PRK09435 membrane ATPase/prote 79.1 3.3 7.1E-05 48.1 5.9 32 290-321 53-84 (332)
329 cd03301 ABC_MalK_N The N-termi 79.0 1.5 3.3E-05 47.0 3.0 27 291-317 24-50 (213)
330 cd03294 ABC_Pro_Gly_Bertaine T 79.0 1.4 3.1E-05 49.3 2.9 26 291-316 48-73 (269)
331 PRK11629 lolD lipoprotein tran 78.9 1.5 3.2E-05 47.9 2.9 25 291-315 33-57 (233)
332 PF14532 Sigma54_activ_2: Sigm 78.9 0.9 2E-05 45.5 1.1 26 291-316 19-44 (138)
333 smart00787 Spc7 Spc7 kinetocho 78.9 37 0.00081 39.2 14.2 75 994-1068 203-284 (312)
334 PRK11248 tauB taurine transpor 78.9 1.5 3.2E-05 48.9 2.9 27 291-317 25-51 (255)
335 TIGR02858 spore_III_AA stage I 78.9 1.6 3.4E-05 49.2 3.1 40 279-318 97-136 (270)
336 PRK14242 phosphate transporter 78.8 1.5 3.2E-05 48.6 2.8 26 291-316 30-55 (253)
337 PRK13541 cytochrome c biogenes 78.7 1.6 3.4E-05 46.4 2.9 26 291-316 24-49 (195)
338 PRK07952 DNA replication prote 78.7 2.1 4.5E-05 47.6 4.0 29 293-321 99-127 (244)
339 PRK05642 DNA replication initi 78.7 3.2 7E-05 45.6 5.4 27 294-320 46-72 (234)
340 PRK08972 fliI flagellum-specif 78.6 4.4 9.5E-05 48.7 6.8 40 276-315 145-184 (444)
341 TIGR02770 nickel_nikD nickel i 78.6 1.5 3.2E-05 47.8 2.8 27 291-317 10-36 (230)
342 CHL00081 chlI Mg-protoporyphyr 78.6 2.4 5.3E-05 49.4 4.7 32 289-320 34-65 (350)
343 cd03237 ABC_RNaseL_inhibitor_d 78.5 1.5 3.3E-05 48.5 2.9 26 292-317 24-49 (246)
344 cd01394 radB RadB. The archaea 78.5 2.2 4.8E-05 46.0 4.1 37 283-319 7-45 (218)
345 PF15290 Syntaphilin: Golgi-lo 78.5 23 0.00049 39.6 11.6 79 994-1072 88-173 (305)
346 PRK13645 cbiO cobalt transport 78.4 1.4 3.1E-05 49.8 2.7 27 291-317 35-61 (289)
347 cd03234 ABCG_White The White s 78.3 1.7 3.6E-05 47.3 3.1 27 291-317 31-57 (226)
348 PRK00081 coaE dephospho-CoA ki 78.3 1.5 3.4E-05 46.7 2.8 50 294-344 3-57 (194)
349 PRK14955 DNA polymerase III su 78.3 2.6 5.7E-05 50.1 4.9 37 283-319 27-64 (397)
350 cd03261 ABC_Org_Solvent_Resist 78.3 1.6 3.5E-05 47.7 2.9 26 291-316 24-49 (235)
351 PRK01184 hypothetical protein; 78.2 1.5 3.2E-05 46.0 2.6 18 295-312 3-20 (184)
352 TIGR03238 dnd_assoc_3 dnd syst 78.2 2 4.4E-05 51.8 3.9 34 278-311 12-50 (504)
353 PRK10884 SH3 domain-containing 78.2 21 0.00045 38.8 11.2 39 1017-1055 126-164 (206)
354 cd03298 ABC_ThiQ_thiamine_tran 78.2 1.6 3.5E-05 46.8 2.9 26 291-316 22-47 (211)
355 TIGR00635 ruvB Holliday juncti 78.2 2.4 5.2E-05 48.1 4.5 27 291-317 28-54 (305)
356 PRK14958 DNA polymerase III su 78.2 2.6 5.6E-05 51.9 4.9 54 263-320 7-65 (509)
357 cd03222 ABC_RNaseL_inhibitor T 78.2 1.6 3.4E-05 46.1 2.7 28 291-318 23-50 (177)
358 TIGR02237 recomb_radB DNA repa 78.1 2.3 5E-05 45.5 4.1 28 292-319 11-38 (209)
359 cd00046 DEXDc DEAD-like helica 78.1 1.9 4.1E-05 41.3 3.1 26 295-320 2-27 (144)
360 PRK13540 cytochrome c biogenes 78.1 1.7 3.6E-05 46.4 2.9 25 291-315 25-49 (200)
361 PRK06921 hypothetical protein; 78.1 3.2 6.9E-05 46.7 5.3 29 292-320 116-144 (266)
362 PRK14247 phosphate ABC transpo 78.1 1.6 3.5E-05 48.1 2.9 26 291-316 27-52 (250)
363 PF12774 AAA_6: Hydrolytic ATP 78.1 1.9 4.1E-05 47.5 3.4 41 279-319 17-58 (231)
364 PRK10247 putative ABC transpor 78.0 1.7 3.6E-05 47.4 2.9 25 291-315 31-55 (225)
365 PRK13538 cytochrome c biogenes 78.0 1.7 3.6E-05 46.5 2.9 26 292-317 26-51 (204)
366 cd03267 ABC_NatA_like Similar 77.9 1.6 3.5E-05 47.8 2.9 25 291-315 45-69 (236)
367 PF13604 AAA_30: AAA domain; P 77.9 2.7 5.9E-05 44.9 4.5 39 282-321 8-46 (196)
368 PRK14251 phosphate ABC transpo 77.8 1.7 3.6E-05 48.1 2.9 27 291-317 28-54 (251)
369 PRK11247 ssuB aliphatic sulfon 77.8 1.6 3.6E-05 48.6 2.9 27 291-317 36-62 (257)
370 PRK14248 phosphate ABC transpo 77.8 1.7 3.6E-05 48.7 2.9 26 291-316 45-70 (268)
371 PRK13946 shikimate kinase; Pro 77.8 1.8 3.8E-05 45.7 2.9 26 292-317 9-34 (184)
372 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 77.7 1.6 3.6E-05 47.4 2.8 25 291-315 46-70 (224)
373 TIGR00101 ureG urease accessor 77.7 2 4.2E-05 46.2 3.3 26 294-319 2-27 (199)
374 PRK07429 phosphoribulokinase; 77.7 1.6 3.5E-05 50.6 2.8 26 292-317 7-32 (327)
375 PRK14734 coaE dephospho-CoA ki 77.7 1.9 4E-05 46.4 3.2 49 295-344 3-56 (200)
376 PRK00625 shikimate kinase; Pro 77.6 1.8 3.9E-05 45.5 3.0 24 295-318 2-25 (173)
377 PF10186 Atg14: UV radiation r 77.6 61 0.0013 36.5 15.7 12 1060-1071 138-149 (302)
378 cd03257 ABC_NikE_OppD_transpor 77.6 1.7 3.6E-05 47.1 2.8 26 291-316 29-54 (228)
379 PF12128 DUF3584: Protein of u 77.5 81 0.0017 43.2 19.1 34 887-920 226-259 (1201)
380 KOG3354 Gluconate kinase [Carb 77.5 1.9 4.1E-05 44.3 2.9 25 294-318 13-37 (191)
381 cd03250 ABCC_MRP_domain1 Domai 77.4 1.8 3.8E-05 46.3 2.9 27 291-317 29-55 (204)
382 TIGR00679 hpr-ser Hpr(Ser) kin 77.4 1.8 3.9E-05 49.4 3.0 24 293-316 146-169 (304)
383 cd03263 ABC_subfamily_A The AB 77.4 1.8 3.9E-05 46.7 3.0 26 291-316 26-51 (220)
384 cd03247 ABCC_cytochrome_bd The 77.4 1.8 3.9E-05 45.2 2.9 27 291-317 26-52 (178)
385 cd03214 ABC_Iron-Siderophores_ 77.3 1.8 4E-05 45.3 3.0 27 291-317 23-49 (180)
386 PF08614 ATG16: Autophagy prot 77.3 31 0.00067 36.9 12.3 70 994-1063 115-184 (194)
387 cd03232 ABC_PDR_domain2 The pl 77.3 1.8 3.8E-05 46.0 2.8 24 291-314 31-54 (192)
388 PRK09493 glnQ glutamine ABC tr 77.3 1.8 3.8E-05 47.5 2.9 27 291-317 25-51 (240)
389 PRK13648 cbiO cobalt transport 77.3 1.7 3.8E-05 48.6 2.9 26 291-316 33-58 (269)
390 PRK13729 conjugal transfer pil 77.3 8.2 0.00018 46.4 8.5 60 1009-1072 69-128 (475)
391 PRK10419 nikE nickel transport 77.2 1.7 3.7E-05 48.6 2.8 24 291-314 36-59 (268)
392 TIGR02323 CP_lyasePhnK phospho 77.1 1.7 3.8E-05 48.0 2.8 26 291-316 27-52 (253)
393 PF03215 Rad17: Rad17 cell cyc 77.1 2.8 6E-05 51.6 4.8 37 282-318 33-70 (519)
394 PRK14250 phosphate ABC transpo 77.1 1.8 3.9E-05 47.6 2.9 26 291-316 27-52 (241)
395 cd01428 ADK Adenylate kinase ( 77.1 1.8 3.9E-05 45.5 2.8 22 296-317 2-23 (194)
396 cd03215 ABC_Carb_Monos_II This 77.1 1.8 3.9E-05 45.4 2.8 27 291-317 24-50 (182)
397 TIGR03878 thermo_KaiC_2 KaiC d 76.9 2.4 5.3E-05 47.4 3.9 28 292-319 35-62 (259)
398 cd03283 ABC_MutS-like MutS-lik 76.9 1.6 3.5E-05 46.8 2.4 22 293-314 25-46 (199)
399 cd03254 ABCC_Glucan_exporter_l 76.9 1.8 4E-05 46.9 2.9 26 291-316 27-52 (229)
400 TIGR01277 thiQ thiamine ABC tr 76.9 1.8 3.9E-05 46.6 2.8 26 291-316 22-47 (213)
401 cd03252 ABCC_Hemolysin The ABC 76.8 1.8 3.9E-05 47.3 2.8 27 291-317 26-52 (237)
402 PRK07994 DNA polymerase III su 76.8 3 6.6E-05 52.4 5.1 54 263-320 7-65 (647)
403 COG4107 PhnK ABC-type phosphon 76.8 1.4 2.9E-05 46.1 1.7 26 293-318 32-57 (258)
404 PRK13657 cyclic beta-1,2-gluca 76.8 1.3 2.8E-05 55.4 1.9 29 291-319 359-387 (588)
405 PRK05563 DNA polymerase III su 76.8 3 6.4E-05 51.9 5.0 45 273-320 21-65 (559)
406 PRK14267 phosphate ABC transpo 76.8 1.8 4E-05 47.8 2.9 26 291-316 28-53 (253)
407 cd03290 ABCC_SUR1_N The SUR do 76.7 1.9 4.1E-05 46.6 2.9 25 291-315 25-49 (218)
408 PRK11300 livG leucine/isoleuci 76.7 1.9 4.1E-05 47.7 3.0 26 291-316 29-54 (255)
409 PRK00279 adk adenylate kinase; 76.7 1.9 4.2E-05 46.5 3.0 24 295-318 2-25 (215)
410 PF13086 AAA_11: AAA domain; P 76.6 2.7 5.8E-05 44.9 4.1 34 282-317 8-41 (236)
411 cd03112 CobW_like The function 76.6 1.7 3.7E-05 44.8 2.4 23 295-317 2-24 (158)
412 TIGR03005 ectoine_ehuA ectoine 76.6 1.9 4E-05 47.7 2.9 25 291-315 24-48 (252)
413 cd03246 ABCC_Protease_Secretio 76.6 2 4.3E-05 44.7 3.0 27 291-317 26-52 (173)
414 PRK14493 putative bifunctional 76.6 2.3 5E-05 48.0 3.6 27 295-321 3-29 (274)
415 TIGR00382 clpX endopeptidase C 76.5 2.8 6.1E-05 50.0 4.5 24 294-317 117-140 (413)
416 cd03236 ABC_RNaseL_inhibitor_d 76.5 1.4 3E-05 49.2 1.8 39 284-322 17-55 (255)
417 TIGR01189 ccmA heme ABC export 76.5 2 4.4E-05 45.6 3.0 25 291-315 24-48 (198)
418 COG1579 Zn-ribbon protein, pos 76.5 1.3E+02 0.0028 33.4 19.3 71 995-1065 89-166 (239)
419 PRK10744 pstB phosphate transp 76.5 1.9 4E-05 48.1 2.9 27 291-317 37-63 (260)
420 PRK11264 putative amino-acid A 76.5 1.9 4.2E-05 47.5 2.9 27 291-317 27-53 (250)
421 COG0630 VirB11 Type IV secreto 76.5 2.3 4.9E-05 49.0 3.6 38 280-318 131-168 (312)
422 PRK14273 phosphate ABC transpo 76.5 1.9 4.1E-05 47.7 2.9 26 291-316 31-56 (254)
423 cd03295 ABC_OpuCA_Osmoprotecti 76.4 1.9 4.2E-05 47.3 2.9 25 291-315 25-49 (242)
424 TIGR00968 3a0106s01 sulfate AB 76.4 2 4.2E-05 47.2 3.0 27 291-317 24-50 (237)
425 TIGR01351 adk adenylate kinase 76.4 1.9 4E-05 46.5 2.7 22 296-317 2-23 (210)
426 TIGR02324 CP_lyasePhnL phospho 76.4 1.9 4.2E-05 46.6 2.9 27 291-317 32-58 (224)
427 PRK09183 transposase/IS protei 76.4 2.3 5E-05 47.6 3.5 28 292-319 101-128 (259)
428 PRK11174 cysteine/glutathione 76.3 1.4 2.9E-05 55.1 1.9 27 291-317 374-400 (588)
429 COG1428 Deoxynucleoside kinase 76.3 1.6 3.4E-05 47.1 2.1 44 293-342 4-47 (216)
430 PRK14238 phosphate transporter 76.3 1.9 4.1E-05 48.4 2.9 28 291-318 48-75 (271)
431 COG1474 CDC6 Cdc6-related prot 76.3 3 6.4E-05 49.1 4.5 41 282-322 31-71 (366)
432 PRK14949 DNA polymerase III su 76.2 3.1 6.6E-05 53.8 4.9 52 264-319 8-64 (944)
433 PRK10418 nikD nickel transport 76.2 1.9 4.2E-05 47.7 2.9 27 291-317 27-53 (254)
434 cd03233 ABC_PDR_domain1 The pl 76.2 2 4.3E-05 46.0 2.8 27 291-317 31-57 (202)
435 cd03228 ABCC_MRP_Like The MRP 76.1 2.1 4.5E-05 44.5 2.9 27 291-317 26-52 (171)
436 cd03216 ABC_Carb_Monos_I This 76.1 2 4.4E-05 44.3 2.8 26 291-316 24-49 (163)
437 PF13177 DNA_pol3_delta2: DNA 76.1 4.3 9.3E-05 42.0 5.2 34 289-322 15-48 (162)
438 PRK00771 signal recognition pa 76.1 4.3 9.3E-05 48.9 5.9 30 291-320 93-122 (437)
439 cd03213 ABCG_EPDR ABCG transpo 76.1 2 4.4E-05 45.6 2.9 27 291-317 33-59 (194)
440 TIGR02204 MsbA_rel ABC transpo 76.0 1.6 3.5E-05 54.3 2.4 28 291-318 364-391 (576)
441 PRK08699 DNA polymerase III su 76.0 3.4 7.3E-05 47.9 4.9 39 282-320 8-48 (325)
442 cd03231 ABC_CcmA_heme_exporter 76.0 2 4.4E-05 45.8 2.9 26 291-316 24-49 (201)
443 cd04155 Arl3 Arl3 subfamily. 76.0 2.7 5.9E-05 42.9 3.7 31 284-314 5-35 (173)
444 TIGR02203 MsbA_lipidA lipid A 76.0 1.6 3.4E-05 54.2 2.3 28 291-318 356-383 (571)
445 PF11932 DUF3450: Protein of u 76.0 33 0.00071 38.2 12.5 54 998-1051 59-112 (251)
446 PRK06851 hypothetical protein; 75.9 2.9 6.3E-05 49.1 4.3 31 290-320 27-57 (367)
447 cd03244 ABCC_MRP_domain2 Domai 75.9 2.1 4.5E-05 46.3 2.9 27 291-317 28-54 (221)
448 PRK13949 shikimate kinase; Pro 75.9 2.1 4.6E-05 44.6 2.9 24 295-318 3-26 (169)
449 PRK14240 phosphate transporter 75.9 2 4.4E-05 47.4 2.9 25 291-315 27-51 (250)
450 PRK14532 adenylate kinase; Pro 75.8 1.9 4.2E-05 45.3 2.6 23 295-317 2-24 (188)
451 PRK13632 cbiO cobalt transport 75.8 2 4.3E-05 48.2 2.9 26 291-316 33-58 (271)
452 PRK13646 cbiO cobalt transport 75.8 2 4.3E-05 48.7 2.8 26 291-316 31-56 (286)
453 PRK10865 protein disaggregatio 75.7 2.7 5.9E-05 54.9 4.4 25 294-318 599-623 (857)
454 TIGR03740 galliderm_ABC gallid 75.7 2.1 4.6E-05 46.3 3.0 26 291-316 24-49 (223)
455 PRK10771 thiQ thiamine transpo 75.7 2 4.4E-05 46.8 2.8 25 291-315 23-47 (232)
456 PRK14722 flhF flagellar biosyn 75.7 2.4 5.3E-05 49.9 3.6 28 292-319 136-163 (374)
457 PRK13341 recombination factor 75.7 3 6.4E-05 53.4 4.6 36 282-317 41-76 (725)
458 COG4026 Uncharacterized protei 75.6 24 0.00052 38.1 10.4 57 997-1053 151-207 (290)
459 COG1703 ArgK Putative periplas 75.6 8.2 0.00018 43.9 7.5 67 278-344 35-145 (323)
460 cd03114 ArgK-like The function 75.6 2.6 5.7E-05 43.0 3.4 27 296-322 2-28 (148)
461 PRK13543 cytochrome c biogenes 75.5 2.1 4.5E-05 46.2 2.9 26 291-316 35-60 (214)
462 PRK12323 DNA polymerase III su 75.5 3.5 7.5E-05 51.7 5.0 53 264-319 8-64 (700)
463 TIGR00362 DnaA chromosomal rep 75.5 3.9 8.5E-05 48.7 5.4 27 294-320 137-163 (405)
464 PRK10575 iron-hydroxamate tran 75.5 1.9 4.2E-05 48.1 2.6 26 291-316 35-60 (265)
465 PRK14269 phosphate ABC transpo 75.5 2.1 4.6E-05 47.2 2.9 25 291-315 26-50 (246)
466 PRK08181 transposase; Validate 75.5 2.4 5.3E-05 47.7 3.4 30 292-321 105-134 (269)
467 PRK13638 cbiO cobalt transport 75.4 2 4.3E-05 48.2 2.7 25 291-315 25-49 (271)
468 PRK05201 hslU ATP-dependent pr 75.4 3.6 7.9E-05 49.0 4.9 25 293-317 50-74 (443)
469 PRK09544 znuC high-affinity zi 75.4 2.1 4.6E-05 47.5 2.9 27 291-317 28-54 (251)
470 TIGR01288 nodI ATP-binding ABC 75.4 2.1 4.5E-05 48.9 2.9 27 291-317 28-54 (303)
471 TIGR02397 dnaX_nterm DNA polym 75.4 4.1 8.9E-05 47.2 5.4 31 289-319 32-62 (355)
472 PRK14263 phosphate ABC transpo 75.4 2.1 4.6E-05 47.8 2.9 26 291-316 32-57 (261)
473 PRK14952 DNA polymerase III su 75.4 3.3 7.2E-05 51.6 4.9 44 273-320 18-62 (584)
474 cd01128 rho_factor Transcripti 75.3 1.7 3.7E-05 48.4 2.1 37 282-318 5-41 (249)
475 PRK14255 phosphate ABC transpo 75.3 2.1 4.6E-05 47.3 2.9 25 291-315 29-53 (252)
476 cd03249 ABC_MTABC3_MDL1_MDL2 M 75.3 2.1 4.5E-05 46.9 2.8 27 291-317 27-53 (238)
477 PRK08451 DNA polymerase III su 75.2 3.6 7.8E-05 50.7 5.0 54 263-319 5-62 (535)
478 PRK06835 DNA replication prote 75.2 3.9 8.5E-05 47.4 5.1 30 292-321 182-211 (329)
479 PRK10867 signal recognition pa 75.2 4.5 9.7E-05 48.7 5.7 30 291-320 98-127 (433)
480 TIGR00959 ffh signal recogniti 75.1 2.8 6E-05 50.3 4.0 29 291-319 97-125 (428)
481 PRK11701 phnK phosphonate C-P 75.1 2.1 4.5E-05 47.6 2.8 26 291-316 30-55 (258)
482 TIGR03411 urea_trans_UrtD urea 75.1 2.2 4.8E-05 46.8 2.9 27 291-317 26-52 (242)
483 PLN02200 adenylate kinase fami 75.1 2.7 5.9E-05 46.3 3.6 26 292-317 42-67 (234)
484 PRK14274 phosphate ABC transpo 75.1 2.2 4.7E-05 47.4 2.9 27 291-317 36-62 (259)
485 COG4778 PhnL ABC-type phosphon 75.1 2.1 4.6E-05 44.7 2.5 22 292-313 36-57 (235)
486 cd03248 ABCC_TAP TAP, the Tran 75.1 2.2 4.8E-05 46.2 2.9 27 291-317 38-64 (226)
487 PF13476 AAA_23: AAA domain; P 75.1 2.4 5.3E-05 44.2 3.1 25 293-317 19-43 (202)
488 TIGR03771 anch_rpt_ABC anchore 75.0 2.2 4.8E-05 46.3 2.9 26 292-317 5-30 (223)
489 cd03221 ABCF_EF-3 ABCF_EF-3 E 75.0 2.2 4.8E-05 43.2 2.7 26 291-316 24-49 (144)
490 PRK10619 histidine/lysine/argi 75.0 2.2 4.7E-05 47.4 2.9 26 291-316 29-54 (257)
491 CHL00181 cbbX CbbX; Provisiona 75.0 2.5 5.4E-05 48.1 3.4 27 295-321 61-87 (287)
492 PRK14960 DNA polymerase III su 75.0 3.4 7.4E-05 51.8 4.7 52 264-319 7-63 (702)
493 cd00879 Sar1 Sar1 subfamily. 75.0 4 8.7E-05 42.6 4.7 38 276-313 2-39 (190)
494 PRK13975 thymidylate kinase; P 74.9 2.3 5.1E-05 44.8 3.0 24 294-317 3-26 (196)
495 cd03369 ABCC_NFT1 Domain 2 of 74.8 2.3 5E-05 45.5 2.9 27 291-317 32-58 (207)
496 smart00333 TUDOR Tudor domain. 74.8 9.6 0.00021 31.9 6.1 48 158-205 6-55 (57)
497 TIGR01188 drrA daunorubicin re 74.8 2.2 4.8E-05 48.7 3.0 27 291-317 17-43 (302)
498 PRK08533 flagellar accessory p 74.8 2.8 6.1E-05 46.0 3.7 28 291-318 22-49 (230)
499 PRK10790 putative multidrug tr 74.8 1.6 3.4E-05 54.7 1.8 32 291-322 365-396 (592)
500 PRK14237 phosphate transporter 74.7 2.3 4.9E-05 47.6 3.0 24 291-314 44-67 (267)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.5e-207 Score=1879.26 Aligned_cols=754 Identities=46% Similarity=0.760 Sum_probs=694.7
Q ss_pred CCcEEEEEcCCCCEEEEEEEEeeCCeEEEE----ecCCeEEEEeCCCcc--cCCCCcccCcCCccccccCCchhHHHHHH
Q 001346 157 KKLRVWCRLEDGKWESGMIQSTSGDEAFVL----LSNGNVVKVSTGELL--PANPDILEGVDDLIQLSYLNEPSVLNNIQ 230 (1095)
Q Consensus 157 ~~~~vW~~~~~~~~~~~~v~~~~~~~~~v~----~~~g~~~~v~~~~~~--~~np~~~~~~~Dl~~L~~LnE~svL~~L~ 230 (1095)
.|..||+|+.+.+|..|.+.+..-.+..|. ..+|....|+...+. ..+||.++++|||+.|+|||||+|||||+
T Consensus 8 ~g~~~w~p~~e~~Wi~~~~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~P~~~~vdDLt~LSyLNEpsVl~nL~ 87 (1463)
T COG5022 8 VGSGCWIPDEEKGWIWAEIIKEAFNKGKVTEEGKKEDGESVSVKKKVLGNDRIKLPKFDGVDDLTELSYLNEPAVLHNLE 87 (1463)
T ss_pred cCceeeeeccccceeeeeechhhhhccccccchhhccCcccceeehhcccccccCccccCchhhhhhhccCcHHHHHHHH
Confidence 488999999999999999988743322222 235655566555443 34577999999999999999999999999
Q ss_pred HHhhcCccccccCCcEEEEcCCCCCCCCChHHHHHHcccCCC--CCchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhh
Q 001346 231 YRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTE 308 (1095)
Q Consensus 231 ~Ry~~~~iYT~~G~iLiavNP~k~l~~Y~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe 308 (1095)
+||.+++||||.|.+|||||||+++|||++++++.|.++... +|||||||+.||+.|...++||||||||||||||||
T Consensus 88 kRY~n~~IYTYSGlvLIAvNPy~~L~iYt~d~i~~Y~~K~r~el~PHvfAIAe~aY~~lls~~eNQtIiISGESGAGKTe 167 (1463)
T COG5022 88 KRYNNGQIYTYSGLVLIAVNPYRDLGIYTDDIIQSYSGKNRLELEPHVFAIAEEAYRNLLSEKENQTIIISGESGAGKTE 167 (1463)
T ss_pred HHhhcCceeEEeeeEEEEecCcccCCCccHHHHHHhccCccccCCchHHHHHHHHHHHHHhcCCCceEEEecCCCCCchH
Confidence 999999999999999999999999999999999999998866 799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCc----chHHHHHhhhHHHHHhcccccCCCCCCCccccEEEEEEcCCCceeeeEeeeeecccccc
Q 001346 309 TAKFAMQYLAALGGGSE----GIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLEKSRV 384 (1095)
Q Consensus 309 ~~K~il~yLa~~~~~~~----~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~~~g~i~Ga~i~~yLLEksRV 384 (1095)
+||.||+|||+++++++ .||.+||++||||||||||||+||||||||||||+|.||.+|.|+||+|++||||||||
T Consensus 168 ~aK~ImqYlasv~~s~~~~~~~iE~~ILaTNPILEAFGNAkTvRNdNSSRFGKyikI~Fd~~g~I~GA~I~~YLLEKSRV 247 (1463)
T COG5022 168 NAKRIMQYLASVTSSSTVEISSIEKQILATNPILEAFGNAKTVRNDNSSRFGKYIKIEFDENGEICGAKIETYLLEKSRV 247 (1463)
T ss_pred HHHHHHHHHHHhccCCcchHHHHHHHHHhcchHHHHhccccccccCCcccccceEEEEECCCCceechhhhhhhhhhhhh
Confidence 99999999999988765 89999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCcccchhhhhcCCChhhHHhcCCCCCCCCCcccCCCccccCCcchHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 001346 385 VQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLMEALDIVLIRKEDREQTFAML 464 (1095)
Q Consensus 385 v~~~~gERnfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~l~~Al~~lG~~~~e~~~i~~iL 464 (1095)
|+|+.+|||||||||||+|+++..++.+++..+.+|.||++++|..++|+||+++|+.|+.||++|||+.++|.+||+||
T Consensus 248 V~Q~~~ERNYHIFYQll~G~~~~~k~~~~~~~~~dY~Yl~~~~~~~I~gIdD~kefk~t~~AlktiGi~~eeq~~IF~iL 327 (1463)
T COG5022 248 VHQNKNERNYHIFYQLLAGDPEELKKLLLLQNPKDYIYLSQGGCDKIDGIDDAKEFKITLDALKTIGIDEEEQDQIFKIL 327 (1463)
T ss_pred ccCCCCccchhhhhhHhcCChHHHHHHhhccChHhhHhHhhcCCCcCCCcccHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 99999999999999999998888888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCceEEEecCCCceeecChHHHHHHHHhcCCCHHHHHHhHhhcEEeeCCceEEecCCHHHHHHHHHHHHHHHHH
Q 001346 465 AAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKDSIAKKLTLQQAIDSRDALAKFIYG 544 (1095)
Q Consensus 465 aAILhLGni~F~~~~~~~~~~~~~~~~l~~aa~LLgv~~~~L~~~L~~~~~~~~~e~i~~~l~~~qA~~~rDalak~LY~ 544 (1095)
|||||||||+|..+ .++.+.+.+.+.++.+|.|||||++.|.++|++|.|++++|.|.+++|..||..+||||||+||+
T Consensus 328 AaILhiGNIef~~~-r~g~a~~~~~~~~~~~c~LLgId~~~f~k~lvk~~ikt~~E~i~~~~n~~QA~~irdslAK~lY~ 406 (1463)
T COG5022 328 AAILHIGNIEFKED-RNGAAIFSDNSVLDKACYLLGIDPSLFVKWLVKRQIKTGGEWIVVPLNLEQALAIRDSLAKALYS 406 (1463)
T ss_pred HHHHhhcceeeeec-ccchhhcCCchHHHHHHHHhCCCHHHHHHHHHHhHhhcCceEEEecCCHHHHHHHHHHHHHHHHH
Confidence 99999999999953 44567788899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccccCCCCccceeEeecccCcccCCCCChhHHHhhhhhHHHHHHHHHhhhhhhHhhhhhcCCceeeec
Q 001346 545 SLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVE 624 (1095)
Q Consensus 545 ~LF~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~eY~~EgI~~~~i~ 624 (1095)
+||+|||++||.+|..+.. ..+|||||||||||+|+.|||||||||||||||||+||+|||++||+||.+|||+|++|+
T Consensus 407 ~lFdwiV~rIN~sL~~~~~-~~~fIGVLDIyGFEiFEkNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~~Id 485 (1463)
T COG5022 407 NLFDWIVDRINKSLDHSAA-ASNFIGVLDIYGFEIFEKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFID 485 (1463)
T ss_pred HHHHHHHHHHHhhccCccc-cccceeEEeecchhhhccCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcccccc
Confidence 9999999999999997654 568999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChHHHHHHHhc-CCCccccccccccCCCCCChHHHHHHHHHHhC--CCCccccCC--CCCeEEeccCccccccccchh
Q 001346 625 FEDNEECLNLIEK-KPLGVLSLLDEESNFPKATDLTFANKLKQHLG--SNSCFKGER--GRAFSIRHYAGEVPYDTNGFL 699 (1095)
Q Consensus 625 f~dN~~~ldLie~-~p~Gll~lLDeE~~~p~~sd~~f~~kl~~~~~--~~~~f~~~~--~~~F~I~HyaG~V~Y~~~gfl 699 (1095)
|.||++||||||+ .|.|||++|||||.+|.|||++|..||.+.+. +++.|.++| ...|+|.||||+|.|+++||+
T Consensus 486 y~DnQ~~IDLIE~~~p~GIlslLDEE~~~p~atd~s~~sKL~~~l~~~~~~~f~~~rf~~~~FvvkHYAgDVeY~veg~l 565 (1463)
T COG5022 486 YFDNQPCIDLIEKKNPLGILSLLDEECVMPHATDESFTSKLAQRLNKNSNPKFKKSRFRDNKFVVKHYAGDVEYDVEGFL 565 (1463)
T ss_pred cccCcchhHHHhccCCCchHhhhcHHhcCCCCCchHHHHHHHHHhccccCccccccccCCCceEEEeecccceeeccchh
Confidence 9999999999997 47999999999999999999999999999886 567788764 568999999999999999999
Q ss_pred hhccCcchHHHHHHHhhchHHH-HHHhhcccCCCCCCCCCCCCCCCCCcCccchHHHHHHHHHHHHHHHhccCCeeeEec
Q 001346 700 EKNRDPLQTDIIQLLSSCTCQV-LQLFASKMLKPSPKPAASSQPGALDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCI 778 (1095)
Q Consensus 700 eKN~D~l~~d~~~ll~~S~~~l-~~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~fk~qL~~L~~~L~~t~~hfIrCI 778 (1095)
+||+|+++.++++||.+|++++ ..+|.......+ ..+++|+++.||.||..||++|++|+|||||||
T Consensus 566 dKNkD~l~~~ll~Ll~~StNe~vs~Lf~~~~~~~~------------K~~~pT~gs~~K~sl~~Lm~tl~sTqphyIRCI 633 (1463)
T COG5022 566 DKNKDPLNDDLLELLKASTNEFVSTLFDDEENIES------------KGRFPTLGSRFKESLNSLMSTLNSTQPHYIRCI 633 (1463)
T ss_pred hhCcchhhHHHHHHHhhccchHHHHhhhhhhhccc------------cCCCCcHHHHHHHHHHHHHHHHHhcCCceeEee
Confidence 9999999999999999999986 578873332111 245689999999999999999999999999999
Q ss_pred cCCCCCCCcccchhHHHHhhhhhchhHHHHHHhhCCCcccchhhHHHhhhccccccccC------CChHHHHHHHHHhcC
Q 001346 779 KPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQLS------QDPLSISVAVLQQFN 852 (1095)
Q Consensus 779 kPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~------~d~~~~~~~iL~~~~ 852 (1095)
|||..|.|+.||..+|++|||||||||+|||+|+|||.|++|+||+.||++|.|..... .|.+.+|..||....
T Consensus 634 kPN~~K~p~~fD~~mVL~QLr~~GVlE~IRIsraGFP~R~~f~EFv~RY~IL~p~~~~~~~~~~~~~~~~~~~~IL~~~~ 713 (1463)
T COG5022 634 KPNEEKSPWTFDNQMVLSQLRCCGVLETIRISRAGFPSRWTFDEFVQRYRILSPSKSWTGEYTWKEDTKNAVKSILEELV 713 (1463)
T ss_pred CCCcccCccccchHHHHHHHHhcchhhheeeccccCchhhhHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999975432 356889999999999
Q ss_pred CCCcceeeceeeeeeccchhHHhhhhhhhHHH-HHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 001346 853 VLPEMYQVGYTKLYLRSGQLAALEDRRKQVLQ-AIIRLQKCFRGYQARSRFRELCNGVITLQSFARGENTRRR 924 (1095)
Q Consensus 853 l~~~~yqiGkTKVFLr~g~l~~LE~~R~~~l~-aai~IQa~~Rg~~aRr~y~~lr~aai~IQs~~Rg~~aRr~ 924 (1095)
++...||+|.||||||+|+++.||.+|...+. .++.||++|||+..|++|....+.+..+|...+|++.|+.
T Consensus 714 id~~~YqiG~TKvFfKagvL~~LE~~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~ 786 (1463)
T COG5022 714 IDSSKYQIGNTKVFFKAGVLAALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRL 786 (1463)
T ss_pred CChhheeccceeEEeeCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhh
Confidence 99999999999999999999999999998886 6789999999999999999887766666666665555543
No 2
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=9.5e-202 Score=1840.44 Aligned_cols=751 Identities=31% Similarity=0.509 Sum_probs=698.9
Q ss_pred EEEEcCCCCEEEEEEE-EeeCCeEEEEe---cCCeEEEEeCCCcccCCCCc-ccCcCCccccccCCchhHHHHHHHHhhc
Q 001346 161 VWCRLEDGKWESGMIQ-STSGDEAFVLL---SNGNVVKVSTGELLPANPDI-LEGVDDLIQLSYLNEPSVLNNIQYRYSR 235 (1095)
Q Consensus 161 vW~~~~~~~~~~~~v~-~~~~~~~~v~~---~~g~~~~v~~~~~~~~np~~-~~~~~Dl~~L~~LnE~svL~~L~~Ry~~ 235 (1095)
.|.++++.+|..|+|+ +..++.++|.. ++|++++|+.+++.++||+. .++++||+.|++|||++|||+|+.||.+
T Consensus 43 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~n~~~~~~~~~Dl~~L~~lnE~~vL~nL~~Ry~~ 122 (821)
T PTZ00014 43 AVKEDPDLMFAKCLVLPGSTGEKLTLKQIDPPTNSTFEVKPEHAFNANSQIDPMTYGDIGLLPHTNIPCVLDFLKHRYLK 122 (821)
T ss_pred CCCCCchhheeeEEEEEecCCCEEEEEEecCCCCcEEEeeHHHhhhcCCCCCcCCcchhhhCCCCCHHHHHHHHHHHHcC
Confidence 3457788999999999 88889888874 47999999999999999997 6789999999999999999999999999
Q ss_pred CccccccCCcEEEEcCCCCCCCCChHHHHHHcccCC---CCCchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHHHH
Q 001346 236 DMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVM---DSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKF 312 (1095)
Q Consensus 236 ~~iYT~~G~iLiavNP~k~l~~Y~~~~~~~y~~~~~---~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~ 312 (1095)
++||||+|++|||||||+++|+|++++++.|++... .|||||+||+.||+.|+..++||||||||||||||||+||+
T Consensus 123 ~~IYTy~G~iLIavNPyk~l~~y~~~~~~~Y~~~~~~~~lpPHifavA~~Ay~~m~~~~~~QsIiiSGESGAGKTe~tK~ 202 (821)
T PTZ00014 123 NQIYTTADPLLVAINPFKDLGNTTNDWIRRYRDAKDSDKLPPHVFTTARRALENLHGVKKSQTIIVSGESGAGKTEATKQ 202 (821)
T ss_pred CCCeeeECCEEEEECCCCCCCCCcHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHHHH
Confidence 999999999999999999999999999999998532 38999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCC--cchHHHHHhhhHHHHHhcccccCCCCCCCccccEEEEEEcCCCceeeeEeeeeeccccccccccCC
Q 001346 313 AMQYLAALGGGS--EGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLEKSRVVQLAAG 390 (1095)
Q Consensus 313 il~yLa~~~~~~--~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~~~g~i~Ga~i~~yLLEksRVv~~~~g 390 (1095)
+|+|||.++++. ..|+++|+++||||||||||||+|||||||||||++|+|+.+|.|+||+|++|||||||||.|++|
T Consensus 203 im~yla~~~~~~~~~~ie~~Il~sNpiLEAFGNAKT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~YLLEKSRVv~q~~g 282 (821)
T PTZ00014 203 IMRYFASSKSGNMDLKIQNAIMAANPVLEAFGNAKTIRNNNSSRFGRFMQLQLGEEGGIRYGSIVAFLLEKSRVVTQEDD 282 (821)
T ss_pred HHHHHHHhccCCCcccHHHHHHHHHHHHHHhhccCcCCCCCcCcceeEEEEEEcCCCcEeeEEEEEEeccCceeeecCCC
Confidence 999999987653 369999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccchhhhhcCCChhhHHhcCCCCCCCCCcccCCCccccCCcchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHh
Q 001346 391 ERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLMEALDIVLIRKEDREQTFAMLAAVLWL 470 (1095)
Q Consensus 391 ERnfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~l~~Al~~lG~~~~e~~~i~~iLaAILhL 470 (1095)
|||||||||||+|+++++|++|+|.++.+|+||+++ |..++++||+++|..++.||++|||+++++..||+||||||||
T Consensus 283 ERNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~-~~~~~~~dD~~~f~~~~~A~~~lg~s~~e~~~If~ilaaILhL 361 (821)
T PTZ00014 283 ERSYHIFYQLLKGANDEMKEKYKLKSLEEYKYINPK-CLDVPGIDDVKDFEEVMESFDSMGLSESQIEDIFSILSGVLLL 361 (821)
T ss_pred CCCEeHHHHHHhCCCHHHHHHcCCCChHhccccCCC-CccCCCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999965 8899999999999999999999999999999999999999999
Q ss_pred cCceEEEecC---CCceeecC--hHHHHHHHHhcCCCHHHHHHhHhhcEEeeCCceEEecCCHHHHHHHHHHHHHHHHHH
Q 001346 471 GNISFQVIDN---ENHVEVIA--DEAVTTAAMLMGCSSDELMLALSTHKIQAGKDSIAKKLTLQQAIDSRDALAKFIYGS 545 (1095)
Q Consensus 471 Gni~F~~~~~---~~~~~~~~--~~~l~~aa~LLgv~~~~L~~~L~~~~~~~~~e~i~~~l~~~qA~~~rDalak~LY~~ 545 (1095)
|||+|...+. .+.+.+.+ .+.++.||+||||++++|.++|+++++.++++.+.+++|++||.++||||||+||++
T Consensus 362 GNi~F~~~~~~~~~~~~~i~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~i~~~~~~~qA~~~rdalaK~lY~r 441 (821)
T PTZ00014 362 GNVEIEGKEEGGLTDAAAISDESLEVFNEACELLFLDYESLKKELTVKVTYAGNQKIEGPWSKDESEMLKDSLSKAVYEK 441 (821)
T ss_pred cceeEeccccCCCCCceeccCCCHHHHHHHHHHhCCCHHHHHHHhhceEEEeCCeeEecCCCHHHHHHHHHHHHHHHHHH
Confidence 9999986532 23444543 568999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccccCCCCccceeEeecccCcccCCCCChhHHHhhhhhHHHHHHHHHhhhhhhHhhhhhcCCceeeecc
Q 001346 546 LFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVEF 625 (1095)
Q Consensus 546 LF~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~eY~~EgI~~~~i~f 625 (1095)
||+|||.+||.+|.+.. ....+||||||||||+|+.|||||||||||||+|||+||+|+|+.||++|.+|||+|+.|+|
T Consensus 442 LF~wiV~~IN~~l~~~~-~~~~~IGiLDI~GFE~f~~NSfEQLcINy~NEkLQq~F~~~vF~~EqeeY~~EgI~~~~i~f 520 (821)
T PTZ00014 442 LFLWIIRNLNATIEPPG-GFKVFIGMLDIFGFEVFKNNSLEQLFINITNEMLQKNFVDIVFERESKLYKDEGISTEELEY 520 (821)
T ss_pred HHHHHHHHHHHHhcCCc-ccCceEEEEecccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCC
Confidence 99999999999998754 34679999999999999999999999999999999999999999999999999999999999
Q ss_pred cChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCccccCC---CCCeEEeccCccccccccchhhhc
Q 001346 626 EDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGER---GRAFSIRHYAGEVPYDTNGFLEKN 702 (1095)
Q Consensus 626 ~dN~~~ldLie~~p~Gll~lLDeE~~~p~~sd~~f~~kl~~~~~~~~~f~~~~---~~~F~I~HyaG~V~Y~~~gfleKN 702 (1095)
.||++|||||+++|.|||++|||||.+|++||++|++||++++++|++|..++ ...|+|+||||+|+|+++||++||
T Consensus 521 ~dN~~~idLie~k~~GIl~lLDEec~~p~~tD~~f~~kl~~~~~~~~~f~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN 600 (821)
T PTZ00014 521 TSNESVIDLLCGKGKSVLSILEDQCLAPGGTDEKFVSSCNTNLKNNPKYKPAKVDSNKNFVIKHTIGDIQYCASGFLFKN 600 (821)
T ss_pred CCcHHHHHHHhcCCccHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCccCCCCCCCCceEEEEeceeeeeccCcHHHhc
Confidence 99999999999999999999999999999999999999999999999998764 479999999999999999999999
Q ss_pred cCcchHHHHHHHhhchHHHH-HHhhcccCCCCCCCCCCCCCCCCCcCccchHHHHHHHHHHHHHHHhccCCeeeEeccCC
Q 001346 703 RDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSPKPAASSQPGALDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPN 781 (1095)
Q Consensus 703 ~D~l~~d~~~ll~~S~~~l~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~fk~qL~~L~~~L~~t~~hfIrCIkPN 781 (1095)
+|+|+++++++|++|+++++ .+|.......+ ...+.+||+++|+.||+.||++|++|+||||||||||
T Consensus 601 kD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~-----------~~~k~~tv~s~Fk~qL~~Lm~~L~~t~phfIRCIKPN 669 (821)
T PTZ00014 601 KDVLRPELVEVVKASPNPLVRDLFEGVEVEKG-----------KLAKGQLIGSQFLNQLDSLMSLINSTEPHFIRCIKPN 669 (821)
T ss_pred cccchHHHHHHHHhCccHHHHHHhcccccccc-----------cccCCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCcC
Confidence 99999999999999999864 67864321111 1223479999999999999999999999999999999
Q ss_pred CCCCCcccchhHHHHhhhhhchhHHHHHHhhCCCcccchhhHHHhhhcccccccc--CCChHHHHHHHHHhcCCCCccee
Q 001346 782 SKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQL--SQDPLSISVAVLQQFNVLPEMYQ 859 (1095)
Q Consensus 782 ~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~--~~d~~~~~~~iL~~~~l~~~~yq 859 (1095)
+.+.|+.||.++|++||||+||||+|||+|.|||+|++|.+|+.||++|.+.... ..|++..|+.||+.++++++.|+
T Consensus 670 ~~k~p~~fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~f~~F~~rY~~L~~~~~~~~~~d~k~~~~~il~~~~l~~~~~~ 749 (821)
T PTZ00014 670 ENKKPLDWNSSKVLIQLHSLSILEALQLRQLGFSYRRTFAEFLSQFKYLDLAVSNDSSLDPKEKAEKLLERSGLPKDSYA 749 (821)
T ss_pred cccCccccchHhHHHHhhhhhHHHHHHHHhcCCcccccHHHHHHHHHhcCcccccCCCCCHHHHHHHHHHHcCCCcccEE
Confidence 9999999999999999999999999999999999999999999999999876543 35899999999999999999999
Q ss_pred eceeeeeeccchhHHhhhhhhhHHH----HHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 001346 860 VGYTKLYLRSGQLAALEDRRKQVLQ----AIIRLQKCFRGYQARSRFRELCNGVITLQSFARGENTRRR 924 (1095)
Q Consensus 860 iGkTKVFLr~g~l~~LE~~R~~~l~----aai~IQa~~Rg~~aRr~y~~lr~aai~IQs~~Rg~~aRr~ 924 (1095)
+|+||||||.+++..||..|...+. .+..||++||||++|++|++++.++++||++||+++.++.
T Consensus 750 iGkTKVFlr~~~~~~Le~~~~~~~~~~~~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 750 IGKTMVFLKKDAAKELTQIQREKLAAWEPLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred ecCCeEEEcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999998776653 4678999999999999999999999999999999988864
No 3
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=1.7e-190 Score=1721.93 Aligned_cols=677 Identities=80% Similarity=1.222 Sum_probs=645.3
Q ss_pred cCCCCcccCcCCccccccCCchhHHHHHHHHhhcCccccccCCcEEEEcCCCCCCCCChHHHHHHcccCCCCCchhHHHH
Q 001346 202 PANPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMDSPHVYAIAD 281 (1095)
Q Consensus 202 ~~np~~~~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~~Y~~~~~~~y~~~~~~~PHiyavA~ 281 (1095)
|+||+.++++|||+.|++|||++|||+|+.||.+++||||+|+||||||||+.+|+|+++++..|+++...|||||+||+
T Consensus 1 ~~np~~~~~v~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~ly~~~~~~~y~~~~~~~PHifaiA~ 80 (677)
T cd01383 1 PANPDILDGVDDLMQLSYLNEPSVLYNLQYRYSQDLIYTKAGPVLVAVNPFKEVPLYGNDYIEAYRKKSNDSPHVYAIAD 80 (677)
T ss_pred CCCcccccCcchhhhCCCCCHHHHHHHHHHHHcCCCCeEEECCEEEEEcCCcCCCCCCHHHHHHhhCCCCCCCCHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999998888999999999
Q ss_pred HHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHhcCCCcchHHHHHhhhHHHHHhcccccCCCCCCCccccEEEE
Q 001346 282 TAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEI 361 (1095)
Q Consensus 282 ~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l 361 (1095)
+||+.|..+++||||||||||||||||++|++|+||+.+++++ .|+++|+++||||||||||||++||||||||||++|
T Consensus 81 ~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~i~~yLa~~~~~~-~i~~~il~snpiLEaFGNAkT~~N~NSSRFGK~~~l 159 (677)
T cd01383 81 TAYNEMMRDEVNQSIIISGESGAGKTETAKIAMQYLASLGGGS-GIEYEILQTNPILEAFGNAKTSRNDNSSRFGKLIEI 159 (677)
T ss_pred HHHHHHHHcCCCceEEEecCCCCCcchHHHHHHHHHHhhCCCC-cHHHHHHHHHHHHHHhhccccCCCCCcCccceeEEE
Confidence 9999999999999999999999999999999999999998765 899999999999999999999999999999999999
Q ss_pred EEcCCCceeeeEeeeeeccccccccccCCCCcccchhhhhcCCChhhHHhcCCCCCCCCCcccCCCccccCCcchHHHHH
Q 001346 362 HFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFH 441 (1095)
Q Consensus 362 ~f~~~g~i~Ga~i~~yLLEksRVv~~~~gERnfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~ 441 (1095)
+||.+|+|+||+|++||||||||+.|++||||||||||||+|+++++|++|+|.++.+|+||++++|..++++||+.+|.
T Consensus 160 ~f~~~g~i~ga~i~~yLLEksRv~~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dd~~~f~ 239 (677)
T cd01383 160 HFSETGKISGAKIQTFLLEKSRVVQCARGERSYHIFYQLCAGAPPALKEKLNLKSASEYKYLKQSCCYSINGVDDAQRFH 239 (677)
T ss_pred EECCCCcEEEEEEEEEecCCCceeccCCCCchhHHHHHHHcCCCHHHHHHhCCCCHHHCceecCCCcccCCCccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCceEEEecCCCceeecChHHHHHHHHhcCCCHHHHHHhHhhcEEeeCCce
Q 001346 442 NLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKDS 521 (1095)
Q Consensus 442 ~l~~Al~~lG~~~~e~~~i~~iLaAILhLGni~F~~~~~~~~~~~~~~~~l~~aa~LLgv~~~~L~~~L~~~~~~~~~e~ 521 (1095)
.++.||+.|||+++++..||+|||||||||||+|...++++.+++.+.+.++.||+||||++++|.++|+++++.++++.
T Consensus 240 ~~~~al~~lG~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~ 319 (677)
T cd01383 240 TLVEALDIVHISKEDQENVFAMLAAVLWLGNVSFTVIDNENHVEPVADEALSTAAKLIGCNIEDLMLALSTRKMHVNNDN 319 (677)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCcccccCChHHHHHHHHHhCCCHHHHHHHhhhcEEEeCCce
Confidence 99999999999999999999999999999999999877666778888999999999999999999999999999999999
Q ss_pred EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccceeEeecccCcccCCCCChhHHHhhhhhHHHHHHH
Q 001346 522 IAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHF 601 (1095)
Q Consensus 522 i~~~l~~~qA~~~rDalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNEkLQ~~f 601 (1095)
+.++++++||.++||||||+||++||+|||.+||.+|.++......+||||||||||+|+.||||||||||||||||++|
T Consensus 320 ~~~~~~~~qa~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f 399 (677)
T cd01383 320 IVQKLTLQQAIDARDALAKSIYASLFDWLVEQINKSLEVGKRRTGRSISILDIYGFESFDKNSFEQFCINYANERLQQHF 399 (677)
T ss_pred EeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccceEEEeeccccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999876556789999999999999999999999999999999999
Q ss_pred HHhhhhhhHhhhhhcCCceeeecccChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCccccCCCCC
Q 001346 602 NRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGERGRA 681 (1095)
Q Consensus 602 ~~~~F~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~~p~Gll~lLDeE~~~p~~sd~~f~~kl~~~~~~~~~f~~~~~~~ 681 (1095)
++++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||.+|++||++|++||++++++|++|.++++..
T Consensus 400 ~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLdee~~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~ 479 (677)
T cd01383 400 NRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLDEESTFPNATDLTFANKLKQHLKTNSCFRGERGGA 479 (677)
T ss_pred HHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHHcCCCCCHHHHHHHHHHHhCCCCCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888889
Q ss_pred eEEeccCccccccccchhhhccCcchHHHHHHHhhchHHHHHHhhcccCCCCCCCCCCCCCCCCCcCccchHHHHHHHHH
Q 001346 682 FSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVLQLFASKMLKPSPKPAASSQPGALDTQKQSVGTKFKGQLF 761 (1095)
Q Consensus 682 F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l~~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~fk~qL~ 761 (1095)
|+|+||||+|+|+++||++||+|.++++++++|++|++++..+|.+.....+....+..+.++...+..||+++|+.||+
T Consensus 480 F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~~~~f~~~~~~~s~~~~~~~~~~~~~~~~~tv~~~fk~qL~ 559 (677)
T cd01383 480 FTVRHYAGEVTYDTTGFLEKNRDLLHSDSIQLLSSCKCQLPQLFASSMLIQSPVVGPLYVASAADSQKLSVGTKFKGQLF 559 (677)
T ss_pred eEEEEeccceeecCCChHHhccccccHHHHHHHHhCchHHHHHHHhhhhccccccccccccccccccCcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999765433221111111112234567899999999999
Q ss_pred HHHHHHhccCCeeeEeccCCCCCCCcccchhHHHHhhhhhchhHHHHHHhhCCCcccchhhHHHhhhccccccccCCChH
Q 001346 762 KLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQLSQDPL 841 (1095)
Q Consensus 762 ~L~~~L~~t~~hfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~~d~~ 841 (1095)
.||++|++|+||||||||||+.+.|+.||.++|++||||+||||+|||+|.|||+|++|.+|++||++|++......|++
T Consensus 560 ~L~~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~~rY~~L~~~~~~~~~~~ 639 (677)
T cd01383 560 KLMQQLENTTPHFIRCIKPNNKQLPGIYEQGLVLQQLRCCGVLEVVRISRSGYPTRMTHQEFARRYGFLLLENIASQDPL 639 (677)
T ss_pred HHHHHHhCCCCeEEEEECcccccCcCccchhhhHHHhhhccHHHHHHHHhcCCCccccHHHHHHHHHHhCccccCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999877778899
Q ss_pred HHHHHHHHhcCCCCcceeeceeeeeeccchhHHhhhhh
Q 001346 842 SISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRR 879 (1095)
Q Consensus 842 ~~~~~iL~~~~l~~~~yqiGkTKVFLr~g~l~~LE~~R 879 (1095)
..|+.||+.+++++++|++|+||||||.++++.||..|
T Consensus 640 ~~~~~il~~~~~~~~~~~~GkTKVFlr~~~~~~LE~~r 677 (677)
T cd01383 640 SVSVAILQQFNILPEMYQVGYTKLFFRTGQIGALEDTR 677 (677)
T ss_pred HHHHHHHHhcCCCcccEEeccceEEecCcHHHHHhhcC
Confidence 99999999999999999999999999999999999876
No 4
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=2.5e-185 Score=1677.52 Aligned_cols=660 Identities=44% Similarity=0.740 Sum_probs=625.4
Q ss_pred CcCCccccccCCchhHHHHHHHHhhcCccccccCCcEEEEcCCCCCCCCChHHHHHHcccCCC--CCchhHHHHHHHHHH
Q 001346 210 GVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNEM 287 (1095)
Q Consensus 210 ~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~~Y~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m 287 (1095)
|||||+.|++|||++|||+|+.||.+++||||+|+||||||||+++|+|+++.++.|+++... |||||+||+.||+.|
T Consensus 1 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m 80 (671)
T cd01381 1 GVEDMITLGDLHEAGILRNLLIRYKKKLIYTYTGSILVAVNPYQILPIYTADEIKLYKNKSIGELPPHIFAISDNAYTNM 80 (671)
T ss_pred CcchhhhCCCCCHHHHHHHHHHHHccCCCeEeeCCEEEEeCCCccCCCCCHHHHHHHhcCCccccCCCHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999987643 899999999999999
Q ss_pred hhCCCceEEEEcCCCCCChhhHHHHHHHHHHHhcCCCcchHHHHHhhhHHHHHhcccccCCCCCCCccccEEEEEEcCCC
Q 001346 288 MGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFG 367 (1095)
Q Consensus 288 ~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~~~g 367 (1095)
+++++||||||||||||||||++|++|+||+.++++...|+++|+++||||||||||||++||||||||||++|+|+.+|
T Consensus 81 ~~~~~~QsIiisGESGaGKTes~K~i~~yLa~~s~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~F~~~g 160 (671)
T cd01381 81 QREKKNQCIIISGESGAGKTESTKLILQYLAAISGKHSWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNKRG 160 (671)
T ss_pred HHcCCCceEEEEcCCCCCeehHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEEECCCC
Confidence 99999999999999999999999999999999998777899999999999999999999999999999999999999999
Q ss_pred ceeeeEeeeeeccccccccccCCCCcccchhhhhcCCChhhHHhcCCCCCCCCCcccCCCccccCCcchHHHHHHHHHHH
Q 001346 368 KICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLMEAL 447 (1095)
Q Consensus 368 ~i~Ga~i~~yLLEksRVv~~~~gERnfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~l~~Al 447 (1095)
+|+||+|++||||||||+.|++||||||||||||+|+++++|++|+|.++.+|+||++++|..++++||+++|..++.||
T Consensus 161 ~i~Ga~i~~yLLEksRV~~q~~gERnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~al 240 (671)
T cd01381 161 AIEGAKIEQYLLEKSRIVRQARDERNYHIFYCMLAGLSTDEKERLKLGEASDYHYLAQGGCITCEGRDDAKDFADIRSAM 240 (671)
T ss_pred cEEEEEEEEEeccCCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCChhhceeecCCCCccCCCccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHhcCceEEEecC--CCceeecChHHHHHHHHhcCCCHHHHHHhHhhcEEeeCCceEEec
Q 001346 448 DIVLIRKEDREQTFAMLAAVLWLGNISFQVIDN--ENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKDSIAKK 525 (1095)
Q Consensus 448 ~~lG~~~~e~~~i~~iLaAILhLGni~F~~~~~--~~~~~~~~~~~l~~aa~LLgv~~~~L~~~L~~~~~~~~~e~i~~~ 525 (1095)
+.|||+++++..||+|||||||||||+|...+. .+.+++.+.+.++.||.||||++++|.++||++++.++++.+.++
T Consensus 241 ~~lG~~~~e~~~i~~ilaaILhLGni~F~~~~~~~~~~~~i~~~~~l~~~a~LLgv~~~~L~~~lt~~~~~~~~e~i~~~ 320 (671)
T cd01381 241 KVLMFTDQEIWEIFKLLAAILHIGNLRFEATEVDNLAACEVDDTPNLQRVAQLLGVPIQDLMDALTSRTIFTRGETVVTP 320 (671)
T ss_pred HHcCCCHHHHHHHHHHHHHHHhhcceEEeeccCCCCCceeeCChHHHHHHHHHhCCCHHHHhhhhceEEEEeCCceEEec
Confidence 999999999999999999999999999997542 356888999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccceeEeecccCcccCCCCChhHHHhhhhhHHHHHHHHHhh
Q 001346 526 LTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNRHL 605 (1095)
Q Consensus 526 l~~~qA~~~rDalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~~ 605 (1095)
++++||.++||||||+||++||+|||.+||.+|.........+||||||||||+|+.||||||||||||||||++||+++
T Consensus 321 ~~~~qA~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDIfGFE~f~~NsfEQLcINy~NEkLQ~~f~~~v 400 (671)
T cd01381 321 LSREQAVDVRDAFVKGIYGRLFVWIVRKINAAIYKPVQQSRNSIGVLDIFGFENFDVNSFEQLCINFANENLQQFFVQHI 400 (671)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccceEEEEecCCcccCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999986534467899999999999999999999999999999999999999
Q ss_pred hhhhHhhhhhcCCceeeecccChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCccccCC---CCCe
Q 001346 606 FKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGER---GRAF 682 (1095)
Q Consensus 606 F~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~~p~Gll~lLDeE~~~p~~sd~~f~~kl~~~~~~~~~f~~~~---~~~F 682 (1095)
|+.||++|.+|||+|..|+|.||++|||||+++|.|||++|||||.+|+|||++|++||++++++|++|..++ +..|
T Consensus 401 f~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p~~td~~f~~kl~~~~~~~~~~~~~~~~~~~~F 480 (671)
T cd01381 401 FKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLIDEESKFPKGTDQTMLEKLHSQHGLHSNYLKPKSTQETQF 480 (671)
T ss_pred HHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceechHhhcCCCCCHHHHHHHHHHHhcCCCCcccCCCCCCCce
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997543 5789
Q ss_pred EEeccCccccccccchhhhccCcchHHHHHHHhhchHHH-HHHhhcccCCCCCCCCCCCCCCCCCcCccchHHHHHHHHH
Q 001346 683 SIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQV-LQLFASKMLKPSPKPAASSQPGALDTQKQSVGTKFKGQLF 761 (1095)
Q Consensus 683 ~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l-~~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~fk~qL~ 761 (1095)
+|+||||+|+|+++||++||+|.++++++++|++|++++ ..+|...... + .+...+..||+++|+.||+
T Consensus 481 ~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~-~---------~~~~~k~~tv~~~fk~qL~ 550 (671)
T cd01381 481 GINHFAGVVFYDTRGFLEKNRDTFSGDLSQLVQSSKNKFLKQIFQADVEM-G---------AETRKKKPTLSSQFRRSLD 550 (671)
T ss_pred EEEEecceEeeccCCHHHhccchhhHHHHHHHHhChHHHHHHHhcccccc-c---------ccccccCCcHHHHHHHHHH
Confidence 999999999999999999999999999999999999986 4677643210 0 0112345899999999999
Q ss_pred HHHHHHhccCCeeeEeccCCCCCCCcccchhHHHHhhhhhchhHHHHHHhhCCCcccchhhHHHhhhcccccccc---CC
Q 001346 762 KLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQL---SQ 838 (1095)
Q Consensus 762 ~L~~~L~~t~~hfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~---~~ 838 (1095)
.||++|++|+||||||||||..+.|+.||..+|++||||+||||+|||+|.|||+|++|.+|++||++|++.... ..
T Consensus 551 ~L~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~rY~~L~~~~~~~~~~~ 630 (671)
T cd01381 551 LLMRTLSSCQPFFIRCIKPNEYKEPMVFDRELCVRQLRYSGMMETIRIRRAGYPIRHTFREFVERYRVLVPGVKPAYKQD 630 (671)
T ss_pred HHHHHHhcCCCeEEEEeCcchhhccCccChHHHHHHHHhcchHHHHHHHHcCcCceecHHHHHHHHHHhCcccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987654 34
Q ss_pred ChHHHHHHHHHhcCCCCcceeeceeeeeeccchhHHhhhhh
Q 001346 839 DPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRR 879 (1095)
Q Consensus 839 d~~~~~~~iL~~~~l~~~~yqiGkTKVFLr~g~l~~LE~~R 879 (1095)
|++..|..|++.+.+++++|++|+||||||.+.+..||..|
T Consensus 631 ~~~~~~~~il~~~~~~~~~~~~G~TkVFlr~~~~~~LE~~r 671 (671)
T cd01381 631 CLAGLAQRICEAVLLADDDWQLGKTKVFLKDHHDLLLEQER 671 (671)
T ss_pred cHHHHHHHHHHHcCCCcccEEeccceEEECcCHHHHHhhcC
Confidence 77889999999999999999999999999999999999876
No 5
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=6.1e-185 Score=1681.11 Aligned_cols=669 Identities=49% Similarity=0.817 Sum_probs=624.2
Q ss_pred CcCCccccccCCchhHHHHHHHHhhcCccccccCCcEEEEcCCCCCCCCChHHHHHHcccCCC--CCchhHHHHHHHHHH
Q 001346 210 GVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNEM 287 (1095)
Q Consensus 210 ~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~~Y~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m 287 (1095)
|+|||+.|++|||++|||+|+.||.+++||||+|+||||||||+++|+|+++++..|+++... |||||+||++||+.|
T Consensus 1 g~~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~~Y~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m 80 (691)
T cd01380 1 GKDDLTNLSYLHEPAVLHNLRVRFIQKQIYTYSGIVLVAINPYARLPIYGEEIIQAYSGQRKGELDPHIFAIAEEAYKQM 80 (691)
T ss_pred CchhhhhCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEeCCCCCCCcCCHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999988654 899999999999999
Q ss_pred hhCCCceEEEEcCCCCCChhhHHHHHHHHHHHhcCCC------cchHHHHHhhhHHHHHhcccccCCCCCCCccccEEEE
Q 001346 288 MGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGS------EGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEI 361 (1095)
Q Consensus 288 ~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~~~~------~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l 361 (1095)
+.+++||||||||||||||||++|+||+||+.++++. ..|+++|+++||||||||||||++||||||||||++|
T Consensus 81 ~~~~~~QsIiiSGESGaGKTes~K~i~~yLa~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l 160 (691)
T cd01380 81 TRDEKNQSIIVSGESGAGKTVSAKYIMRYFASVGGSDSREVSETQVEEKVLASNPIMEAFGNAKTTRNDNSSRFGKYIQI 160 (691)
T ss_pred HhcCCCceEEEEcCCCCCchHHHHHHHHHHHHhcCCCcccccccCHHHHHHHHHHHHHHhhcCCCCCCCCccccceEEEE
Confidence 9999999999999999999999999999999998753 4799999999999999999999999999999999999
Q ss_pred EEcCCCceeeeEeeeeeccccccccccCCCCcccchhhhhcCCChhhHHhcCCCCCCCCCcccCCCccccCCcchHHHHH
Q 001346 362 HFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFH 441 (1095)
Q Consensus 362 ~f~~~g~i~Ga~i~~yLLEksRVv~~~~gERnfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~ 441 (1095)
+||.+|+|+||+|++||||||||+.|++||||||||||||+|+++++|++|+|.++.+|+||++++|..++++||+++|+
T Consensus 161 ~f~~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~~d~~~f~ 240 (691)
T cd01380 161 LFDKRGRIIGANMRTYLLEKSRVVFQAPGERNYHIFYQLCAGAPSQELKELHLGHADKFNYLNQGGAPTIEGVDDAEDFN 240 (691)
T ss_pred EECCCCCEEEEEEEEeeccccceeecCCCCChhHHHHHHHhCCCHHHHHHhCCCCHHHCccccCCCCccCCCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCceEEEecCCCceeecChHHHHHHHHhcCCCHHHHHHhHhhcEEeeCCce
Q 001346 442 NLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKDS 521 (1095)
Q Consensus 442 ~l~~Al~~lG~~~~e~~~i~~iLaAILhLGni~F~~~~~~~~~~~~~~~~l~~aa~LLgv~~~~L~~~L~~~~~~~~~e~ 521 (1095)
.++.||+.|||+++++..||+|||||||||||+|...++++.....+.+.++.||+||||++++|.++|+++++.+++|.
T Consensus 241 ~~~~al~~lg~s~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~ 320 (691)
T cd01380 241 ATVQALTLLGISEEQQMDIFKLLAALLHLGNIEIEATRNDSSSISPKDENLQIACELLGVDASDLRKWLVKRQIVTRSEK 320 (691)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCCccceecCChHHHHHHHHHhCCCHHHHHHHHHhCEEEECCee
Confidence 99999999999999999999999999999999999765544344456789999999999999999999999999999999
Q ss_pred EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCC--CCccceeEeecccCcccCCCCChhHHHhhhhhHHHHH
Q 001346 522 IAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGK--QCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQ 599 (1095)
Q Consensus 522 i~~~l~~~qA~~~rDalak~LY~~LF~wlV~~IN~~L~~~~--~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNEkLQ~ 599 (1095)
+.+++|++||.++||+|||+||++||+|||.+||.+|.+.. .....+||||||||||+|+.|||||||||||||+||+
T Consensus 321 i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~ 400 (691)
T cd01380 321 IVKPLTKEQAIVARDALAKHIYSKLFDWIVDVINKSLNTGEVKKKQTSFIGVLDIYGFETFEKNSFEQFCINYANEKLQQ 400 (691)
T ss_pred EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCccceEEEEecCcccccCCCCHHHHhhhhhhHHHHH
Confidence 99999999999999999999999999999999999999753 3456799999999999999999999999999999999
Q ss_pred HHHHhhhhhhHhhhhhcCCceeeecccChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHhC--CCCccccC
Q 001346 600 HFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLG--SNSCFKGE 677 (1095)
Q Consensus 600 ~f~~~~F~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~~p~Gll~lLDeE~~~p~~sd~~f~~kl~~~~~--~~~~f~~~ 677 (1095)
+||+++|+.||++|.+|||+|+.|+|.||++|||||++ |.|||++|||||.+|++||++|++||+++++ +|+.|..+
T Consensus 401 ~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~-~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~~~~~ 479 (691)
T cd01380 401 QFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIES-KLGILSLLDEECRLPKGSDESWAQKLYNKLPKKKNPHFEKP 479 (691)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhC-CCchHHHhHHhhcCCCCChHHHHHHHHHHhcccCCCCccCC
Confidence 99999999999999999999999999999999999997 5999999999999999999999999999998 89999776
Q ss_pred C--CCCeEEeccCccccccccchhhhccCcchHHHHHHHhhchHHH-HHHhhcccCCCCCC------CCCCCCCCCCCcC
Q 001346 678 R--GRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQV-LQLFASKMLKPSPK------PAASSQPGALDTQ 748 (1095)
Q Consensus 678 ~--~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l-~~lf~~~~~~~~~~------~~~~~~~~~~~~~ 748 (1095)
+ ...|+|+||||+|+|+++||++||+|.++++++++|++|++++ ..+|.......+.. ++.+...++...+
T Consensus 480 ~~~~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (691)
T cd01380 480 RFGQTSFTVKHFADDVEYDVDGFLEKNRDTVSDEHLDVLKASKNPFLKEVLDAAELASSSSSSAKSKPAAKRPPKRAKQH 559 (691)
T ss_pred CCCCCeeEEEEccCCcccccccHHHhccccccHHHHHHHHhCccHHHHHHhhhhcccccccccccccccccccccccccC
Confidence 4 4789999999999999999999999999999999999999886 56786543221110 1111111223456
Q ss_pred ccchHHHHHHHHHHHHHHHhccCCeeeEeccCCCCCCCcccchhHHHHhhhhhchhHHHHHHhhCCCcccchhhHHHhhh
Q 001346 749 KQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYG 828 (1095)
Q Consensus 749 ~~tv~~~fk~qL~~L~~~L~~t~~hfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~ 828 (1095)
..||+++|+.||+.||++|++|+||||||||||..+.|+.||.++|++||||+||||+|||+|.|||+|++|.+|++||+
T Consensus 560 ~~tv~~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~~ry~ 639 (691)
T cd01380 560 KPTVGSQFKSSLIELMSTLNSTNPHYIRCIKPNDEKKPFKFEPKRVLQQLRACGVLETIRISAAGFPSRWTYEEFAQRYR 639 (691)
T ss_pred CCcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCcccCcCccCHHHHHHHHHHhchHHHHHHHhccCCccccHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccc-cCCChHHHHHHHHHhcCCCCcceeeceeeeeeccchhHHhhhhh
Q 001346 829 VLLSEKQ-LSQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRR 879 (1095)
Q Consensus 829 ~L~~~~~-~~~d~~~~~~~iL~~~~l~~~~yqiGkTKVFLr~g~l~~LE~~R 879 (1095)
+|++... ...|++..|+.||+.+.+++..|++|+||||||.+++..||..|
T Consensus 640 ~L~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~~G~tkVFlk~~~~~~LE~~R 691 (691)
T cd01380 640 VLVPSKELWKSDPKQLCENILTKVIEDEDKYQFGKTKIFFRAGQVAFLEKLR 691 (691)
T ss_pred HhCccccccCCCHHHHHHHHHHHhCCCcccEEecCceEEECcCHHHHHhhcC
Confidence 9999876 35688999999999998888999999999999999999999876
No 6
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=8.4e-185 Score=1680.35 Aligned_cols=672 Identities=47% Similarity=0.750 Sum_probs=626.0
Q ss_pred CCcccCcCCccccccCCchhHHHHHHHHhhcCccccccCCcEEEEcCCCCCCCCChHHHHHHcccCCC--CCchhHHHHH
Q 001346 205 PDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADT 282 (1095)
Q Consensus 205 p~~~~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~~Y~~~~~~~y~~~~~~--~PHiyavA~~ 282 (1095)
||.+++++||+.|++|||++|||+|+.||.+++||||+|+||||||||+++|+|++++++.|+++... |||||+||++
T Consensus 1 p~~~~~v~Dl~~L~~l~E~~il~~L~~Ry~~~~iYT~~G~iLIavNP~k~l~ly~~~~~~~Y~~~~~~~~~PHiyaiA~~ 80 (693)
T cd01377 1 PPKFDKVEDMAELTHLNEASVLHNLRERYYSDLIYTYSGLFCVAVNPYKRLPIYTEEVVEMYRGKKREEMPPHIFAIADN 80 (693)
T ss_pred CCcccCcchhhhCCcCCHHHHHHHHHHHHhcCCcEEeecceeEeecCCccCCCCCHHHHHHhcCCCCCCCCCCHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999987654 8999999999
Q ss_pred HHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHhcCCC----------cchHHHHHhhhHHHHHhcccccCCCCCC
Q 001346 283 AYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGS----------EGIEYEILQTNHILEAFGNAKTSRNDNS 352 (1095)
Q Consensus 283 Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~~~~----------~~ie~~il~snpiLEAFGNAkT~rN~NS 352 (1095)
||+.|..+++||||||||||||||||++|+||+||+.++++. ..|+++|+++||||||||||||++||||
T Consensus 81 Ay~~m~~~~~~QsIiiSGESGAGKTes~K~il~yLa~~~~~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~rN~NS 160 (693)
T cd01377 81 AYRSMLQDRENQSILITGESGAGKTENTKKVIQYLASVAASSKKKKQSGKGQGTLEDQILQANPILEAFGNAKTVRNDNS 160 (693)
T ss_pred HHHHHHhcCCCceEEEEcCCCCCchHHHHHHHHHHHhhcCCCCcccccccccccHHHHHHHHHHHHHHhhccccCCCCCc
Confidence 999999999999999999999999999999999999997642 3699999999999999999999999999
Q ss_pred CccccEEEEEEcCCCceeeeEeeeeeccccccccccCCCCcccchhhhhcCCChhhHHhcCCCCC-CCCCcccCCCcccc
Q 001346 353 SRFGKLIEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVA-NDYNYLNQSECLTI 431 (1095)
Q Consensus 353 SRFGK~i~l~f~~~g~i~Ga~i~~yLLEksRVv~~~~gERnfHIFYqLl~G~~~~~~~~l~L~~~-~~y~yL~~~~~~~~ 431 (1095)
||||||++|+|+.+|+|+||+|.+|||||||||.|++||||||||||||+|+++++|++|+|.+. .+|+||++++| .+
T Consensus 161 SRFGK~i~l~f~~~g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~~y~yL~~~~~-~~ 239 (693)
T cd01377 161 SRFGKFIRIHFGNTGKIAGADIETYLLEKSRVVFQASGERNYHIFYQLLSGADPELKSMLLLTGNPNDYRYLSQGEL-TI 239 (693)
T ss_pred cccceeEEEEECCCCCEEEEEEEEEecccCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCCchhcCeeeCCCCc-cC
Confidence 99999999999999999999999999999999999999999999999999999999999999876 89999999876 47
Q ss_pred CCcchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCceEEEecCCCceeecChHHHHHHHHhcCCCHHHHHHhHh
Q 001346 432 DGVDDAQNFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALS 511 (1095)
Q Consensus 432 ~~~dD~~~f~~l~~Al~~lG~~~~e~~~i~~iLaAILhLGni~F~~~~~~~~~~~~~~~~l~~aa~LLgv~~~~L~~~L~ 511 (1095)
+++||+++|..++.||+.|||+++++..||+|||||||||||+|...++++.+.+.+.+.++.||.||||++++|.++|+
T Consensus 240 ~~~~d~~~f~~~~~al~~lG~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~ 319 (693)
T cd01377 240 PGVDDAEEFKLTDEAFDILGFSDEEKNSIFKIVAAILHLGNIKFKQRQREEQAELDGTEEADKAAHLLGVNSADLLKALL 319 (693)
T ss_pred CCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCCccccCChHHHHHHHHHhCCCHHHHHHHhc
Confidence 89999999999999999999999999999999999999999999987666778889999999999999999999999999
Q ss_pred hcEEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccceeEeecccCcccCCCCChhHHHhh
Q 001346 512 THKIQAGKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCIN 591 (1095)
Q Consensus 512 ~~~~~~~~e~i~~~l~~~qA~~~rDalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcIN 591 (1095)
++++.++++.+.++++++||.++||+|||+||++||+|||.+||.+|.+.. ....+||||||||||+|+.|||||||||
T Consensus 320 ~~~~~~~~e~i~~~~~~~~A~~~rDalak~lY~~LF~wiV~~IN~~l~~~~-~~~~~IgiLDIfGFE~f~~NsfEQLcIN 398 (693)
T cd01377 320 HPRIKVGREWVTKGQNVEQVSFSVGALAKALYERLFLWLVKRINKTLDTKQ-QRAYFIGVLDIAGFEIFDFNSFEQLCIN 398 (693)
T ss_pred ceEEEECCeeEeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCceEEEEecccccccCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999998753 4568999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhhhhhHhhhhhcCCceeeeccc-ChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHhCC
Q 001346 592 YANERLQQHFNRHLFKLEQEEYELDGVDWTRVEFE-DNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGS 670 (1095)
Q Consensus 592 yaNEkLQ~~f~~~~F~~eq~eY~~EgI~~~~i~f~-dN~~~ldLie~~p~Gll~lLDeE~~~p~~sd~~f~~kl~~~~~~ 670 (1095)
||||+||++|++++|+.||++|.+|||+|+.|+|. ||++|||||+++|.|||++|||||.+|++||++|++||++++++
T Consensus 399 yaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lLdee~~~~~~tD~~~~~kl~~~~~~ 478 (693)
T cd01377 399 YTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLLDEECVFPKATDKTFVEKLYDNHLG 478 (693)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhhhHHhcCCCCCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999995 99999999999999999999999999999999999999999999
Q ss_pred CCcccc--C--CCCCeEEeccCccccccccchhhhccCcchHHHHHHHhhchHHHH-HHhhcccCCCCCCCCCCCCCCCC
Q 001346 671 NSCFKG--E--RGRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSPKPAASSQPGAL 745 (1095)
Q Consensus 671 ~~~f~~--~--~~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l~-~lf~~~~~~~~~~~~~~~~~~~~ 745 (1095)
|++|.. + .+..|+|+||||+|+|+++||++||+|.++++++++|++|+++++ .+|.......+.. .........
T Consensus 479 ~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~-~~~~~~~~~ 557 (693)
T cd01377 479 KSKFKKPKKGKAKAHFSLVHYAGTVDYNIDGWLEKNKDPLNDNVVGLLKKSSDKLVAELFKDYAEASGDG-GGGGGKKKK 557 (693)
T ss_pred CCcccccCCCCCCCcEEEEeeceeEeeccccHHHhccccccHHHHHHHHhCchHHHHHHhhhhccccccc-ccccCCCCc
Confidence 988732 2 257899999999999999999999999999999999999999864 6776443211100 000011111
Q ss_pred CcCccchHHHHHHHHHHHHHHHhccCCeeeEeccCCCCCCCcccchhHHHHhhhhhchhHHHHHHhhCCCcccchhhHHH
Q 001346 746 DTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAG 825 (1095)
Q Consensus 746 ~~~~~tv~~~fk~qL~~L~~~L~~t~~hfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~ 825 (1095)
..+..||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|||+|.|||+|++|.+|++
T Consensus 558 ~~~~~tv~~~F~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlEtvrirr~Gyp~R~~f~~F~~ 637 (693)
T cd01377 558 GGSFRTVSQLYKEQLNKLMTTLRSTNPHFVRCIIPNEEKKPGKLDAHLVLDQLRCNGVLEGIRICRKGFPNRILYAEFRQ 637 (693)
T ss_pred CCccccHHHHHHHHHHHHHHHHhccCCeEEEEeCcCccCCCCccCHHHHHHHHHhcchHHHHHHHHcCCCccccHHHHHH
Confidence 23457999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccccc--CCChHHHHHHHHHhcCCCCcceeeceeeeeeccchhHHhhhhh
Q 001346 826 RYGVLLSEKQL--SQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRR 879 (1095)
Q Consensus 826 RY~~L~~~~~~--~~d~~~~~~~iL~~~~l~~~~yqiGkTKVFLr~g~l~~LE~~R 879 (1095)
||++|++.... ..|++..|+.||+.+++++..|++|+||||||.+++..||.+|
T Consensus 638 rY~~L~~~~~~~~~~d~k~~~~~iL~~~~~~~~~~~~G~TKVFlk~~~~~~LE~~R 693 (693)
T cd01377 638 RYEILAPNAIPKGFMDSKKASEKILKSLELDPEQYRFGHTKVFFRAGVLAHLEEMR 693 (693)
T ss_pred HHHHhCcccccccCCCHHHHHHHHHHhcCCCcccEEecCCeEeECccHHHHHhhcC
Confidence 99999987643 4688999999999999999999999999999999999999876
No 7
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=100.00 E-value=3.6e-184 Score=1749.47 Aligned_cols=769 Identities=42% Similarity=0.701 Sum_probs=713.2
Q ss_pred CcEEEEEcCCCCEEEEEEEEeeCCeEEEEecCCeEEE-EeCCCcccCCCCcccCcCCccccccCCchhHHHHHHHHhhcC
Q 001346 158 KLRVWCRLEDGKWESGMIQSTSGDEAFVLLSNGNVVK-VSTGELLPANPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRD 236 (1095)
Q Consensus 158 ~~~vW~~~~~~~~~~~~v~~~~~~~~~v~~~~g~~~~-v~~~~~~~~np~~~~~~~Dl~~L~~LnE~svL~~L~~Ry~~~ 236 (1095)
+.+||||+++++|+.|.|++..|++|+|.+.+|.+++ |+.++++|+|||.++.++||+.|+|||||||||||++||.++
T Consensus 30 kk~vWvpd~~e~fv~~~i~~~~~~~v~v~~~~~~~~~~v~~~~v~~~NPPkfdk~eDMa~LT~lNeasVL~nL~~RY~~~ 109 (1930)
T KOG0161|consen 30 KKWVWVPDPKEGFVKAEIKSEEGEKVTVETEEGGTLTQVKEDDVQKMNPPKFDKVEDMAELTFLNEASVLHNLKQRYASD 109 (1930)
T ss_pred cceeeecCCCCCeeeeeeeccCCCceEEEEcCCceeEEecHHHcCcCCCCCccccccHHHhcccChHHHHhhHHHHHHhC
Confidence 4599999999999999999998888999998777776 999999999999999999999999999999999999999999
Q ss_pred ccccccCCcEEEEcCCCCCCCCChHHHHHHcccCCC--CCchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHHHHHH
Q 001346 237 MIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAM 314 (1095)
Q Consensus 237 ~iYT~~G~iLiavNP~k~l~~Y~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il 314 (1095)
+||||.|.+||+||||+++|||+++++.+|+++... ||||||||+.||++|+.++.||||+|+|||||||||+||.||
T Consensus 110 lIyTYSGLFcVviNPyk~lpiYt~~v~~~ykgkrr~e~pPHIfavad~AYr~mL~~renQSiLiTGESGAGKTeNTKkVI 189 (1930)
T KOG0161|consen 110 LIYTYSGLFCVVINPYKRLPIYTESVVRMYKGKKREEMPPHIFAVADEAYRNMLQDRENQSILITGESGAGKTENTKKVI 189 (1930)
T ss_pred hHHHcccceeEEecCCcCCCCCCHHHHHHhcccccccCCchHHHHHHHHHHHHHhcCCCceEeeecCCCCCcchhHHHHH
Confidence 999999999999999999999999999999998654 899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCC-------cchHHHHHhhhHHHHHhcccccCCCCCCCccccEEEEEEcCCCceeeeEeeeeeccccccccc
Q 001346 315 QYLAALGGGS-------EGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLEKSRVVQL 387 (1095)
Q Consensus 315 ~yLa~~~~~~-------~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~~~g~i~Ga~i~~yLLEksRVv~~ 387 (1095)
+|||.++++. +.++++|+++||||||||||+|++|+|||||||||+|+|+.+|.|+||.|++||||||||++|
T Consensus 190 qyla~va~~~~~~~~~~~~le~qi~q~npvLeaFGNa~tvrn~NssRFgkfirI~F~~~G~i~~a~Ie~yLLEKsRv~~Q 269 (1930)
T KOG0161|consen 190 QYLASVASSSTKKVKIEGTLEDQILQANPVLEAFGNAKTVRNDNSSRFGKFIRIHFDATGKIAGADIETYLLEKSRVIRQ 269 (1930)
T ss_pred HHHHHHhhccccCCCCCCChHHHHHHhCchHHHhcChhhhcCCCCcccceeEEEecCCCCccchhhHHHHHHHHhHhhcc
Confidence 9999998753 579999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccchhhhhcCCChhhHHhcCCCC-CCCCCcccCCCccccCCcchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 001346 388 AAGERSYHIFYQLCAGAPSFLKERLNLKV-ANDYNYLNQSECLTIDGVDDAQNFHNLMEALDIVLIRKEDREQTFAMLAA 466 (1095)
Q Consensus 388 ~~gERnfHIFYqLl~G~~~~~~~~l~L~~-~~~y~yL~~~~~~~~~~~dD~~~f~~l~~Al~~lG~~~~e~~~i~~iLaA 466 (1095)
+++||||||||||++|.++.++..|.|++ +.+|.|+.++.. .++|+||+++|..+..||++|||+++++.+||+|+||
T Consensus 270 ~~~Er~yhiFyqlls~~~~~l~~~l~L~~~~~~Y~f~~~~~~-~i~g~dd~eef~~t~~a~~ilgfs~~E~~~~~~i~sa 348 (1930)
T KOG0161|consen 270 APGERNYHIFYQLLSGADPELKEELLLSDNVKDYKFLSNGES-TIPGVDDAEEFQETDEAMDILGFSEEEKISIFRIVSA 348 (1930)
T ss_pred CcchhHHHHHHHHHhCCCHHHHHHHhhcccchhhhhhccccC-CCCCcchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999965 899999999877 8999999999999999999999999999999999999
Q ss_pred HHHhcCceEEEecCCCceeecChHHHHHHHHhcCCCHHHHHHhHhhcEEeeCCceEEecCCHHHHHHHHHHHHHHHHHHH
Q 001346 467 VLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKDSIAKKLTLQQAIDSRDALAKFIYGSL 546 (1095)
Q Consensus 467 ILhLGni~F~~~~~~~~~~~~~~~~l~~aa~LLgv~~~~L~~~L~~~~~~~~~e~i~~~l~~~qA~~~rDalak~LY~~L 546 (1095)
||||||+.|....+.+.+.+.+.++++.+|.||||+.++|.++++++++++|++.+.+..+.+|+..+..||||++|++|
T Consensus 349 ilhlGn~~f~~~~~~~qa~~~~~~~a~ka~~llg~~~~~~~~al~~priKvg~e~v~k~q~~~q~~~~v~alAk~lYerl 428 (1930)
T KOG0161|consen 349 ILHLGNIKFKQEPREEQAEFDNTEVADKACHLLGINVEEFLKALLRPRIKVGREWVSKAQNVEQVLFAVEALAKALYERL 428 (1930)
T ss_pred HHHhcchhhhccccccccCCCCchHHHHHHHHcCCCHHHHHHHhcccceeccchhhhhcchHHHHHHHHHHHHHHHHHHH
Confidence 99999999998766778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccccCCCCccceeEeecccCcccCCCCChhHHHhhhhhHHHHHHHHHhhhhhhHhhhhhcCCceeeeccc
Q 001346 547 FDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVEFE 626 (1095)
Q Consensus 547 F~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~eY~~EgI~~~~i~f~ 626 (1095)
|.|||.+||.+|... .+..+|||||||+|||+|..||||||||||+||+||||||+|+|.+||++|.+|||.|++|+|.
T Consensus 429 F~wlV~riN~sld~~-~~~~~fIgvLDiaGFEIfe~nSFEQLciNytnEkLQqfFnh~mFvlEqeeY~~EgIew~fidfG 507 (1930)
T KOG0161|consen 429 FGWLVKRINKSLDSK-QQRDYFIGVLDIAGFEIFEFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWDFIDFG 507 (1930)
T ss_pred HHHHHHHHHHHhhhc-cccCCcceeeeeccccccCcCCHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHhCCceeeeccc
Confidence 999999999999986 5667899999999999999999999999999999999999999999999999999999999996
Q ss_pred -ChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHh-CCCCccccCC----CCCeEEeccCccccccccchhh
Q 001346 627 -DNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHL-GSNSCFKGER----GRAFSIRHYAGEVPYDTNGFLE 700 (1095)
Q Consensus 627 -dN~~~ldLie~~p~Gll~lLDeE~~~p~~sd~~f~~kl~~~~-~~~~~f~~~~----~~~F~I~HyaG~V~Y~~~gfle 700 (1095)
|-++|||||++ |.||||+|||||.+|++||.+|+.||...| ++||.|.+++ +.+|.|.||||+|.|+++||++
T Consensus 508 ~Dlq~~idLIEk-p~Gi~slLdEEc~~PkAtd~tf~~kL~~~~~gk~~~f~~~k~~~~~~~F~l~HyaG~V~Y~~~~WL~ 586 (1930)
T KOG0161|consen 508 LDLQPTIDLIEK-PMGILSLLDEECVVPKATDKTFLEKLCDQHLGKHPKFQKPKGKKAEAHFALVHYAGTVDYNVDGWLE 586 (1930)
T ss_pred cchhhhHHHHhc-hhhHHHHHHHHHhcCCCccchHHHHHHHHhhccCccccCcccccchhhhheeeecceeccCccchhh
Confidence 89999999997 689999999999999999999999999877 8999998873 5799999999999999999999
Q ss_pred hccCcchHHHHHHHhhchHH-HHHHhhcccCCCCCCCCCCCC-CCCCCcCccchHHHHHHHHHHHHHHHhccCCeeeEec
Q 001346 701 KNRDPLQTDIIQLLSSCTCQ-VLQLFASKMLKPSPKPAASSQ-PGALDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCI 778 (1095)
Q Consensus 701 KN~D~l~~d~~~ll~~S~~~-l~~lf~~~~~~~~~~~~~~~~-~~~~~~~~~tv~~~fk~qL~~L~~~L~~t~~hfIrCI 778 (1095)
||+|+++..++.+|..|+++ +..+|.+....... ...+.. ..+..+.+.||+..|+.||+.||.+|++|+|||||||
T Consensus 587 Knkdpln~~v~~ll~~s~~~~v~~l~~~~~~~~~~-~~~~~~~~~~K~g~F~Tvs~~~keql~~Lm~~l~~T~phFvRCi 665 (1930)
T KOG0161|consen 587 KNKDPLNDNVVSLLKQSTNKLVSSLFQDYAGAAAA-AKGGEALKKTKKGSFRTVSQLYKEQLNKLMTTLRSTHPHFVRCI 665 (1930)
T ss_pred cCCCCchHHHHHHHHhcccHHHHHHhhhhhccchh-hhhhhhhcccCCcchhhHHHHHHHHHHHHHHHhccCCCceeEEe
Confidence 99999999999999998877 46788762211100 000000 1122345689999999999999999999999999999
Q ss_pred cCCCCCCCcccchhHHHHhhhhhchhHHHHHHhhCCCcccchhhHHHhhhcccccccc--CCChHHHHHHHHHhcCCCCc
Q 001346 779 KPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQL--SQDPLSISVAVLQQFNVLPE 856 (1095)
Q Consensus 779 kPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~--~~d~~~~~~~iL~~~~l~~~ 856 (1095)
.||..|.|+.+|.++|+.||||.||||+|||+|.|||.|++|.+|..||.++.+...+ ..|.+..|+.++..+.++..
T Consensus 666 IPn~~K~~g~ld~~lvl~QLrcngVLEgIRicR~GfPnr~~~~eFrqRy~lla~~~~~~~~~d~k~~~~~~~~~l~~d~~ 745 (1930)
T KOG0161|consen 666 IPNEEKKPGKLDAPLVLNQLRCNGVLEGIRICRQGFPNRMPFQEFRQRYELLAADEPKKGFSDGKKACEKILEELLLDKN 745 (1930)
T ss_pred ccCccccccccCHHHHHHHhhccCcHHHHHHHHhhCccccchHHHHHhHHhhhhhhccccccccchhHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999999999999999944444333 35778899999999999999
Q ss_pred ceeeceeeeeeccchhHHhhhhhhhHHHH-HHHHHHHHhhhhhhhhhhhh---hhHHHHHHHHHHHHHHHHHHHHHhh
Q 001346 857 MYQVGYTKLYLRSGQLAALEDRRKQVLQA-IIRLQKCFRGYQARSRFREL---CNGVITLQSFARGENTRRRHASLGK 930 (1095)
Q Consensus 857 ~yqiGkTKVFLr~g~l~~LE~~R~~~l~a-ai~IQa~~Rg~~aRr~y~~l---r~aai~IQs~~Rg~~aRr~y~~lr~ 930 (1095)
-|++|.||||||.|+++.||.+|...+.. ++.+|+.+|||++|+.|.+. ..++..||..+|.|...+.+...+.
T Consensus 746 lyriG~tKvFfkaGvla~LEe~Rd~~ls~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w~W~~L 823 (1930)
T KOG0161|consen 746 LYRIGHTKVFFKAGVLAHLEEMRDEKLSQIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRTWPWWRL 823 (1930)
T ss_pred eEeecceeeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHH
Confidence 99999999999999999999999988875 56899999999999999877 4588999999999988777665543
No 8
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=6.5e-184 Score=1663.42 Aligned_cols=659 Identities=48% Similarity=0.811 Sum_probs=619.9
Q ss_pred cCcCCccccccCCchhHHHHHHHHhhcCccccccCCcEEEEcCCCCCC-CCChHHHHHHcccCCC--CCchhHHHHHHHH
Q 001346 209 EGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVP-IYGNKFITAYRQKVMD--SPHVYAIADTAYN 285 (1095)
Q Consensus 209 ~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~-~Y~~~~~~~y~~~~~~--~PHiyavA~~Ay~ 285 (1095)
+|||||+.|++|||++|||+|+.||.+++||||+|+||||||||+++| +|+++++..|+++... |||||+||++||+
T Consensus 1 ~gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~~iy~~~~~~~y~~~~~~~~pPHifaiA~~Ay~ 80 (674)
T cd01384 1 EGVDDMTKLSYLHEPGVLQNLKTRYELNEIYTYTGNILIAVNPFQRLPHLYDVHMMEQYKGAALGELSPHVFAIADAAYR 80 (674)
T ss_pred CCcchHhhCCCCCHHHHHHHHHHHHhcCCCeeeECCEEEEECCCCcCCcCCCHHHHHHhcCCCcCCCCCCHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999 9999999999988654 8999999999999
Q ss_pred HHhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHhcCCC----cchHHHHHhhhHHHHHhcccccCCCCCCCccccEEEE
Q 001346 286 EMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGS----EGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEI 361 (1095)
Q Consensus 286 ~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~~~~----~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l 361 (1095)
+|...++||||||||||||||||++|++|+||+.+++.. ..|+++|+++||||||||||||++|+||||||||++|
T Consensus 81 ~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~~~~~~~i~~~il~~npiLEAFGNAkT~~N~NSSRFGK~~~l 160 (674)
T cd01384 81 AMINEGKSQSILVSGESGAGKTETTKMLMRYLAYMGGRAGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEI 160 (674)
T ss_pred HHHHcCCCceEEEECCCCCCchhHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHHHHHhhCCCCCCCCCcchhheeEEE
Confidence 999999999999999999999999999999999997643 3699999999999999999999999999999999999
Q ss_pred EEcCCCceeeeEeeeeeccccccccccCCCCcccchhhhhcCCChhhHHhcCCCCCCCCCcccCCCccccCCcchHHHHH
Q 001346 362 HFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFH 441 (1095)
Q Consensus 362 ~f~~~g~i~Ga~i~~yLLEksRVv~~~~gERnfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~ 441 (1095)
+|+.+|+|+||+|.+||||||||+.|++||||||||||||+| ++++|++|+|.++.+|+||++++|..++++||+++|.
T Consensus 161 ~f~~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g-~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~D~~~f~ 239 (674)
T cd01384 161 QFDDYGRISGAAIRTYLLERSRVCQISDPERNYHCFYQLCAA-PPEDVKKYKLGDPKEFHYLNQSNCFELDGVDDAEEYL 239 (674)
T ss_pred EECCCCcEEEEEEEEEecccCceeecCCCCCchhHHHHHHcC-CHHHHHHcCCCChHhCccccCCCCccccccchHHHHH
Confidence 999999999999999999999999999999999999999999 8999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCceEEEecCCCceeecC---hHHHHHHHHhcCCCHHHHHHhHhhcEEeeC
Q 001346 442 NLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIA---DEAVTTAAMLMGCSSDELMLALSTHKIQAG 518 (1095)
Q Consensus 442 ~l~~Al~~lG~~~~e~~~i~~iLaAILhLGni~F~~~~~~~~~~~~~---~~~l~~aa~LLgv~~~~L~~~L~~~~~~~~ 518 (1095)
.++.||+.|||+++++..||+|||||||||||+|...++.+.+.+.+ .+.++.||.||||++++|.++|+++++.++
T Consensus 240 ~~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~ 319 (674)
T cd01384 240 ATRRAMDVVGISEEEQDAIFRVVAAILHLGNIEFAKGEEIDSSVLKDEKSEFHLKTAAELLMCDEKALEDALCKRVMVTP 319 (674)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCCCCcccccCcccHHHHHHHHHHhCCCHHHHHHHhcccEEEeC
Confidence 99999999999999999999999999999999998765444444443 589999999999999999999999999999
Q ss_pred CceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccceeEeecccCcccCCCCChhHHHhhhhhHHHH
Q 001346 519 KDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQ 598 (1095)
Q Consensus 519 ~e~i~~~l~~~qA~~~rDalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNEkLQ 598 (1095)
++.+.++++++||.++||||||+||++||+|||.+||.+|.+.. ....+||||||||||+|+.|||||||||||||+||
T Consensus 320 ~e~i~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~-~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ 398 (674)
T cd01384 320 EEVITKPLDPDSAELSRDALAKTIYSRLFDWLVNKINSSIGQDP-DSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQ 398 (674)
T ss_pred CceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCeEEEEEecccccccCcCCHHHHHhhhhHHHHH
Confidence 99999999999999999999999999999999999999998753 34689999999999999999999999999999999
Q ss_pred HHHHHhhhhhhHhhhhhcCCceeeecccChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCccccCC
Q 001346 599 QHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGER 678 (1095)
Q Consensus 599 ~~f~~~~F~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~~p~Gll~lLDeE~~~p~~sd~~f~~kl~~~~~~~~~f~~~~ 678 (1095)
++|++++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||.+|++||++|++||++++++|++|..++
T Consensus 399 ~~f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~~~~ 478 (674)
T cd01384 399 QHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKDHKRFEKPK 478 (674)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred --CCCeEEeccCccccccccchhhhccCcchHHHHHHHhhchHHH-HHHhhcccCCCCCCCCCCCCCCCCCcCccchHHH
Q 001346 679 --GRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQV-LQLFASKMLKPSPKPAASSQPGALDTQKQSVGTK 755 (1095)
Q Consensus 679 --~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l-~~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~ 755 (1095)
+..|+|+||||+|+|+++||++||+|.++++++++|++|++++ ..+|....... +...+..||+++
T Consensus 479 ~~~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~-----------~~~~k~~tv~~~ 547 (674)
T cd01384 479 LSRTAFTIDHYAGDVTYQTDQFLDKNKDYVVAEHQALLNASNCSFVAGLFPPLPEET-----------SKSSKFSSIGSR 547 (674)
T ss_pred CCCCeeEEEEecceeeecCCCHHHhcCCcccHHHHHHHHhCchHHHHHHhccccccc-----------ccccccccHHHH
Confidence 5789999999999999999999999999999999999999986 46776432111 012345799999
Q ss_pred HHHHHHHHHHHHhccCCeeeEeccCCCCCCCcccchhHHHHhhhhhchhHHHHHHhhCCCcccchhhHHHhhhccccccc
Q 001346 756 FKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQ 835 (1095)
Q Consensus 756 fk~qL~~L~~~L~~t~~hfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~ 835 (1095)
|+.||+.||++|++|+||||||||||+.+.|+.||.++|++||||+||||+|||+|.|||+|++|.+|++||++|++...
T Consensus 548 fk~~L~~L~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~ry~~L~~~~~ 627 (674)
T cd01384 548 FKQQLQSLMETLSTTEPHYIRCIKPNNVLKPGIFENENVLQQLRCGGVLEAIRISCAGYPTRRTFDEFLDRFGILAPEVL 627 (674)
T ss_pred HHHHHHHHHHHHhccCCeEEEEeCCCcccCCCccCHHHHHHHHHHcchHHHHHHHhcCCCccccHHHHHHHHHHhCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred c-CCChHHHHHHHHHhcCCCCcceeeceeeeeeccchhHHhhhhhhhH
Q 001346 836 L-SQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRKQV 882 (1095)
Q Consensus 836 ~-~~d~~~~~~~iL~~~~l~~~~yqiGkTKVFLr~g~l~~LE~~R~~~ 882 (1095)
. ..+++..|+.||+.+++ +.|++|+||||||.+++..||..|.+.
T Consensus 628 ~~~~~~~~~~~~il~~~~~--~~~~~GktkVFlr~~~~~~LE~~R~~~ 673 (674)
T cd01384 628 KGSSDDKAACKKILDKMGL--KGYQIGKTKVFLRAGQMAELDARRTEV 673 (674)
T ss_pred cCCCcHHHHHHHHHHhCCC--CCEEecCeeEEEcCCHHHHHHHHHHhc
Confidence 4 45778899999998765 579999999999999999999999764
No 9
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=1.6e-183 Score=1664.57 Aligned_cols=657 Identities=44% Similarity=0.734 Sum_probs=621.6
Q ss_pred CcCCccccccCCchhHHHHHHHHhhcCccccccCCcEEEEcCCCCCCCCChHHHHHHcccCCC--CCchhHHHHHHHHHH
Q 001346 210 GVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNEM 287 (1095)
Q Consensus 210 ~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~~Y~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m 287 (1095)
|||||+.|++|||++|||+|+.||.+|+||||+|++|||||||+++|+|++++++.|+++... |||||+||++||+.|
T Consensus 1 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~ly~~~~~~~Y~~~~~~~~~PHifaiA~~Ay~~m 80 (674)
T cd01378 1 GVDDLVLLSKISEEAIVENLKKRFQNDLIYTYIGPVLISVNPFKQLPIYTDETIELYKGKSRYELPPHIYALADNAYRSM 80 (674)
T ss_pred CcchhhhCCCCCHHHHHHHHHHHHhcCCCeeccCCcEEEEcCCCCCCCCCHHHHHHHhCCCCCCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999988654 899999999999999
Q ss_pred hhCCCceEEEEcCCCCCChhhHHHHHHHHHHHhcCCC---cchHHHHHhhhHHHHHhcccccCCCCCCCccccEEEEEEc
Q 001346 288 MGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGS---EGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFS 364 (1095)
Q Consensus 288 ~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~~~~---~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~ 364 (1095)
+.+++||||||||||||||||++|++|+||+.++++. ..++++|+++||||||||||||++|+||||||||++|+|+
T Consensus 81 ~~~~~~QsIiisGESGaGKTe~~K~il~yL~~~~~~~~~~~~i~~~i~~~npiLEAFGNAkT~~N~NSSRFgk~~~l~f~ 160 (674)
T cd01378 81 KSENENQCVIISGESGAGKTEAAKKIMQYIAAVSGGGQKVERVKDVILQSNPLLEAFGNAKTLRNNNSSRFGKYMEIQFD 160 (674)
T ss_pred HHcCCCceEEEEcCCCCCcchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHhhccccCCCCCcchhheeEEEEEC
Confidence 9999999999999999999999999999999998764 3599999999999999999999999999999999999999
Q ss_pred CCCceeeeEeeeeeccccccccccCCCCcccchhhhhcCCChhhHHhcCCCCCCCCCcccCCCccccCCcchHHHHHHHH
Q 001346 365 AFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLM 444 (1095)
Q Consensus 365 ~~g~i~Ga~i~~yLLEksRVv~~~~gERnfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~l~ 444 (1095)
.+|.|+||+|++||||||||+.|++||||||||||||+|+++++|++|+|.++.+|+||++++|..++++||+++|..++
T Consensus 161 ~~g~i~ga~i~~yLLEksRVv~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~ 240 (674)
T cd01378 161 FKGDPVGGKITNYLLEKSRVVSQNKGERNFHIFYQLLAGASEQLLRELGLQKPEYYYYLNQSQCYTVDGIDDKKDFKETQ 240 (674)
T ss_pred CCCCEeeEEEEEeecCCCceeecCCCCchhHHHHHHHcCCCHHHHHHhCCCChhhCeeecCCCccCCCCccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHhcCceEEEecCCCceeecChHHHHHHHHhcCCCHHHHHHhHhhcEEeeCC----c
Q 001346 445 EALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGK----D 520 (1095)
Q Consensus 445 ~Al~~lG~~~~e~~~i~~iLaAILhLGni~F~~~~~~~~~~~~~~~~l~~aa~LLgv~~~~L~~~L~~~~~~~~~----e 520 (1095)
.||+.|||+++++..||+|||||||||||+|...++ +.+.+.+.+.++.||.||||++++|.++|+++++.+++ |
T Consensus 241 ~al~~lG~s~~e~~~i~~ilaaILhLGni~f~~~~~-~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~~~~~e 319 (674)
T cd01378 241 NAMKVIGFSEDEQDEIFRIVAAILHLGNVQFAENGD-GAAVISDKDVLDFAAYLLGVDPSELEKALTSRTIETGGGGRGE 319 (674)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeccCC-CccccCChHHHHHHHHHcCCCHHHHHHHhcccEEEeCCCCCce
Confidence 999999999999999999999999999999986543 33678899999999999999999999999999999998 9
Q ss_pred eEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccceeEeecccCcccCCCCChhHHHhhhhhHHHHHH
Q 001346 521 SIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQH 600 (1095)
Q Consensus 521 ~i~~~l~~~qA~~~rDalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNEkLQ~~ 600 (1095)
.+.++++++||.++||+|||+||++||+|||.+||.+|.+.......+||||||||||+|+.|||||||||||||+||++
T Consensus 320 ~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~ 399 (674)
T cd01378 320 VYDVPLNVEQAAYTRDALAKAIYSRLFDWLVSRINKALQVKSPGKNKVIGVLDIYGFEIFQKNSFEQFCINYVNEKLQQI 399 (674)
T ss_pred eEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcceEEEEecccccccccccHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999986445678999999999999999999999999999999999
Q ss_pred HHHhhhhhhHhhhhhcCCceeeecccChHHHHHHHhc-CCCccccccccccCCC-CCChHHHHHHHHHHhCCCCccccC-
Q 001346 601 FNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEK-KPLGVLSLLDEESNFP-KATDLTFANKLKQHLGSNSCFKGE- 677 (1095)
Q Consensus 601 f~~~~F~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~-~p~Gll~lLDeE~~~p-~~sd~~f~~kl~~~~~~~~~f~~~- 677 (1095)
||+++|+.||++|.+|||+|+.|+|.||++|||||++ +|.|||++|||||.+| ++||++|++||++++++|+++..+
T Consensus 400 f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~lLdee~~~p~~~tD~~~~~kl~~~~~~~~~~~~~~ 479 (674)
T cd01378 400 FIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSILDDVCATPHEGTDQTFLEKLNKKFSSHPHSDHFS 479 (674)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHHHHHHHcCCCCCChHHHHHHHHHHhccCCCCCCCC
Confidence 9999999999999999999999999999999999999 8999999999999999 999999999999999999986543
Q ss_pred -CCCCeEEeccCccccccccchhhhccCcchHHHHHHHhhchHHHH-HHhhcccCCCCCCCCCCCCCCCCCcCccchHHH
Q 001346 678 -RGRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSPKPAASSQPGALDTQKQSVGTK 755 (1095)
Q Consensus 678 -~~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~ 755 (1095)
.+..|+|+||||+|+|+++||++||+|.++++++++|++|+++++ .+|++.....+ ..+..||+++
T Consensus 480 ~~~~~F~I~HyAG~V~Y~~~gfleKNrD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~------------~~~~~tv~~~ 547 (674)
T cd01378 480 SGSDEFRIKHYAGDVTYSVEGFCDKNKDTLFKDLIELMQSSSNPFLRSLFPEKSDADS------------KKRPTTAGFK 547 (674)
T ss_pred CCCCcEEEEEeceeeeecCcCHHHhhcchhhHHHHHHHHhCchHHHHHHhcccccccc------------cCCCCcHHHH
Confidence 367999999999999999999999999999999999999999864 67764321110 1234799999
Q ss_pred HHHHHHHHHHHHhccCCeeeEeccCCCCCCCcccchhHHHHhhhhhchhHHHHHHhhCCCcccchhhHHHhhhccccccc
Q 001346 756 FKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQ 835 (1095)
Q Consensus 756 fk~qL~~L~~~L~~t~~hfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~ 835 (1095)
|+.||+.||++|++|+||||||||||+.+.|+.||.++|++||||+||||+|||+|.|||+|++|.+|++||++|++...
T Consensus 548 fk~qL~~Lm~~L~~t~phfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~~~~F~~rY~~L~~~~~ 627 (674)
T cd01378 548 IKTSANALVETLMKCTPHYIRCIKPNETKSPNDFDESRVLHQVKYLGLLENVRVRRAGFAYRQTFDKFLQRYKLLSPKTW 627 (674)
T ss_pred HHHHHHHHHHHHHccCCeEEEEECCCccCCchhcCHHHHHHHHHhcChHHHHHHHhcCCCccccHHHHHHHHHHhCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred c--CCChHHHHHHHHHhcCCCCcceeeceeeeeeccc-hhHHhhhhh
Q 001346 836 L--SQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSG-QLAALEDRR 879 (1095)
Q Consensus 836 ~--~~d~~~~~~~iL~~~~l~~~~yqiGkTKVFLr~g-~l~~LE~~R 879 (1095)
. ..|++..|+.||+.+++++++|++|+||||||+| ++..||.+|
T Consensus 628 ~~~~~~~k~~~~~iL~~~~~~~~~~~~GkTkVFlr~~~~l~~le~~R 674 (674)
T cd01378 628 PTWPGDAKSGVEVILKDLNIDPEEYQMGKTKIFIRNPETLFALEEMR 674 (674)
T ss_pred cccCCCHHHHHHHHHHHcCCCcccEEecCceEEEeCchhHHHHHhcC
Confidence 2 4688999999999999999999999999999997 799999876
No 10
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=4.9e-183 Score=1658.79 Aligned_cols=668 Identities=41% Similarity=0.727 Sum_probs=618.8
Q ss_pred cCcCCccccccCCchhHHHHHHHHhhcCccccccCCcEEEEcCCCCCCCCChHHHHHHcccCCC--CCchhHHHHHHHHH
Q 001346 209 EGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNE 286 (1095)
Q Consensus 209 ~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~~Y~~~~~~~y~~~~~~--~PHiyavA~~Ay~~ 286 (1095)
+|||||+.|++|||++|||+|+.||.+|+||||+|+||||||||+.+|+|+++.+..|+++... |||||+||++||+.
T Consensus 1 ~gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~ly~~~~~~~Y~~~~~~~~~PHifavA~~Ay~~ 80 (677)
T cd01387 1 DGVEDMTQLEDLQETTVLWNLKLRFERNLIYTYIGSILVSVNPYKMFPIYGPEQVQQYAGRALGENPPHLFAIANLAFAK 80 (677)
T ss_pred CCcchhhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999999999999999987654 89999999999999
Q ss_pred HhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHhcCC-CcchHHHHHhhhHHHHHhcccccCCCCCCCccccEEEEEEcC
Q 001346 287 MMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGG-SEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSA 365 (1095)
Q Consensus 287 m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~~~-~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~~ 365 (1095)
|+.+++||||||||||||||||++|++|+||+.++++ +..|+++|+++||||||||||||++||||||||||++|+|+
T Consensus 81 m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~~~l~f~- 159 (677)
T cd01387 81 MLDAKQNQCVIISGESGSGKTEATKLILRYLAAMNQGGSAVITEQILEATPLLEAFGNAKTVRNDNSSRFGKFVEIFLE- 159 (677)
T ss_pred HHhcCCCceEEEEcCCCCCeehHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhCcCCCCCCCccccceEEEEEec-
Confidence 9999999999999999999999999999999998743 35799999999999999999999999999999999999996
Q ss_pred CCceeeeEeeeeeccccccccccCCCCcccchhhhhcCCChhhHHhcCCCCCCCCCcccCCCccccCCcchHHHHHHHHH
Q 001346 366 FGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLME 445 (1095)
Q Consensus 366 ~g~i~Ga~i~~yLLEksRVv~~~~gERnfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~l~~ 445 (1095)
+|.|+||+|++||||||||+.|++||||||||||||+|+++++|++|+|.++.+|+||++++|..+++.+|+++|..++.
T Consensus 160 ~g~i~Ga~i~~yLLEksRvv~q~~gErnfHIFYqll~g~~~~~~~~~~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~ 239 (677)
T cd01387 160 GGVIVGAITSQYLLEKSRIVFQAKNERNYHIFYELLAGLPAQLRQAFSLQEAETYYYLNQGGNCEIAGKSDADDFRRLLA 239 (677)
T ss_pred CCcEeEEEEEEEecCCCceeecCCCCchHHHHHHHHhCCCHHHHHHhcCCCHHhCchhcCCCcccCCCcCHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999988889999999999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHHhcCceEEEecC--CCceeecChHHHHHHHHhcCCCHHHHHHhHhhcEEeeCCceEE
Q 001346 446 ALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDN--ENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKDSIA 523 (1095)
Q Consensus 446 Al~~lG~~~~e~~~i~~iLaAILhLGni~F~~~~~--~~~~~~~~~~~l~~aa~LLgv~~~~L~~~L~~~~~~~~~e~i~ 523 (1095)
||+.|||+++++..||+|||||||||||+|...++ .+.+.+.+++.++.||+||||++++|.++||++++.+++|.+.
T Consensus 240 al~~lg~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~lt~~~~~~~~e~i~ 319 (677)
T cd01387 240 AMEVLGFSSEDQDSIFRILASILHLGNVYFEKRETDAQEVASVVSAREIQAVAELLQISPEGLQKAITFKVTETRREKIF 319 (677)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhhcCeEEeeccCCCCcccccCCHHHHHHHHHHhCCCHHHHHHHhccCeEEeCCceEe
Confidence 99999999999999999999999999999987542 2346788999999999999999999999999999999999999
Q ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccceeEeecccCcccCCCCChhHHHhhhhhHHHHHHHHH
Q 001346 524 KKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNR 603 (1095)
Q Consensus 524 ~~l~~~qA~~~rDalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNEkLQ~~f~~ 603 (1095)
++++++||.++||+|||+||++||+|||.+||.+|.+. ....+||||||||||+|+.|||||||||||||+||++||+
T Consensus 320 ~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~--~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~ 397 (677)
T cd01387 320 TPLTVESAVDARDAIAKVLYALLFNWLITRVNALVSPT--QDTLSIAILDIYGFEDLSFNSFEQLCINYANENLQYLFNK 397 (677)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCceEEEEecCccccCCCCCHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999874 3467999999999999999999999999999999999999
Q ss_pred hhhhhhHhhhhhcCCceeeecccChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCccccCC--CCC
Q 001346 604 HLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGER--GRA 681 (1095)
Q Consensus 604 ~~F~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~~p~Gll~lLDeE~~~p~~sd~~f~~kl~~~~~~~~~f~~~~--~~~ 681 (1095)
++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||.+|+++|++|++|++..+++|+.|..++ ...
T Consensus 398 ~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lLdee~~~p~~td~~~~~kl~~~~~~~~~~~~~~~~~~~ 477 (677)
T cd01387 398 IVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRILDDQCCFPQATDHTFLQKCHYHHGANPLYSKPKMPLPE 477 (677)
T ss_pred HHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHHHHHhcCCCCchHHHHHHHHHhccCCccccCCCCCCCe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998764 468
Q ss_pred eEEeccCccccccccchhhhccCcchHHHHHHHhhchHHHH-HHhhcccCCCCCCCCCCCCCCCCCcCccchHHHHHHHH
Q 001346 682 FSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSPKPAASSQPGALDTQKQSVGTKFKGQL 760 (1095)
Q Consensus 682 F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~fk~qL 760 (1095)
|+|+||||+|+|+++||++||+|.++++++++|++|+++++ .+|.......+.++......++...+.+||+++|+.||
T Consensus 478 F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~s~~~~~~~~~tv~~~f~~sL 557 (677)
T cd01387 478 FTIKHYAGKVTYQVHKFLDKNHDQVRQDVLDLFVSSRTRVVAHLFSSHAAQRAPKRLGKSSSGTRLYKAHTVAAKFQQSL 557 (677)
T ss_pred eEEEEeCceeeecCCChHHhccchhhHHHHHHHHhCCcHHHHHHHhhhhcccccccccCCCccccccCCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999865 56754322111111111111222334579999999999
Q ss_pred HHHHHHHhccCCeeeEeccCCCCCCCcccchhHHHHhhhhhchhHHHHHHhhCCCcccchhhHHHhhhccccccccCCCh
Q 001346 761 FKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQLSQDP 840 (1095)
Q Consensus 761 ~~L~~~L~~t~~hfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~~d~ 840 (1095)
+.||++|++|+||||||||||..+.|+.||.++|++||||+||||+|||+|.|||+|++|.+|++||++|++......++
T Consensus 558 ~~L~~~l~~t~phfIRCIKPN~~k~~~~Fd~~~V~~QLr~~GvlE~vri~r~Gyp~r~~~~~F~~rY~~L~~~~~~~~~~ 637 (677)
T cd01387 558 LDLVEKMERCNPLFVRCLKPNHKKEPGLFEPDVVMAQLRYSGVLETVRIRKEGFPVRLPFQHFIDRYRCLVALKLARPAP 637 (677)
T ss_pred HHHHHHHhcCCCeEEEEECCCCcCCccccChHHHHHHHHHhchHHHHHHHHccCCccccHHHHHHHHHHhCcccccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876544444
Q ss_pred HHH-HHHHHHhcCCCCcceeeceeeeeeccchhHHhhhhh
Q 001346 841 LSI-SVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRR 879 (1095)
Q Consensus 841 ~~~-~~~iL~~~~l~~~~yqiGkTKVFLr~g~l~~LE~~R 879 (1095)
... +..+++.++++++.|++|+||||||.++...||..|
T Consensus 638 ~~~~~~~ll~~~~~~~~~~~iG~TkVFlk~~~~~~LE~~r 677 (677)
T cd01387 638 GDMCVSELSRLCGVEPPMYRVGASKLFLKEHLHQLLESMR 677 (677)
T ss_pred HHHHHHHHHHHcCCCcccEEecceeEEEcCCHHHHHHhcC
Confidence 444 467888889999999999999999999999999876
No 11
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=7.2e-182 Score=1651.93 Aligned_cols=669 Identities=41% Similarity=0.681 Sum_probs=619.2
Q ss_pred ccCcCCccccccCCchhHHHHHHHHhhcCccccccCCcEEEEcCCCCCCCCChHHHHHHcccC-C--CCCchhHHHHHHH
Q 001346 208 LEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKV-M--DSPHVYAIADTAY 284 (1095)
Q Consensus 208 ~~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~~Y~~~~~~~y~~~~-~--~~PHiyavA~~Ay 284 (1095)
..++|||+.|++|||++|||+|+.||.+++||||+|++|||||||+++|+|++++++.|+++. . .|||||+||++||
T Consensus 6 ~~~~~Dl~~L~~lnE~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~~y~~~~~~~Y~~~~~~~~lpPHiy~iA~~Ay 85 (692)
T cd01385 6 QREYDDLCNLPELTEGTLLKNLRHRFLQGHIYTYAGSILVAVNPFKFLPIYNPKYVRLYENQQRLGKLPPHIFAIADVAY 85 (692)
T ss_pred cCCCChhhhCCCCCHHHHHHHHHHHHhcCCCeEeECCEEEEECCCcCCCCCCHHHHHHHhcCCCcCCCCCCHHHHHHHHH
Confidence 357899999999999999999999999999999999999999999999999999999998875 2 3899999999999
Q ss_pred HHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHhcCC---CcchHHHHHhhhHHHHHhcccccCCCCCCCccccEEEE
Q 001346 285 NEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGG---SEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEI 361 (1095)
Q Consensus 285 ~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~~~---~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l 361 (1095)
+.|+.+++||||||||||||||||++|++|+||+.+++. ..+|+++|+++||||||||||||++|+||||||||++|
T Consensus 86 ~~m~~~~~~QsIiisGESGAGKTet~K~il~yL~~~s~~~~~~~~i~~~i~~snpiLEAFGNAkT~~N~NSSRFGK~i~l 165 (692)
T cd01385 86 YNMLRKKVNQCIVISGESGSGKTESTNFLIHHLTALSQKGYAGSGVEQTILSAGPVLEAFGNAKTAHNNNSSRFGKFIQV 165 (692)
T ss_pred HHHHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhccCCccCCcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEE
Confidence 999999999999999999999999999999999998753 24799999999999999999999999999999999999
Q ss_pred EEcCCCceeeeEeeeeeccccccccccCCCCcccchhhhhcCCChhhHHhcCCCCCCCCCcccCCCccccCCcchHHHHH
Q 001346 362 HFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFH 441 (1095)
Q Consensus 362 ~f~~~g~i~Ga~i~~yLLEksRVv~~~~gERnfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~ 441 (1095)
+|+.+|.|+||+|++||||||||+.|++||||||||||||+|+++++|++++|.+..+|+||++++|...+++||+.+|.
T Consensus 166 ~F~~~g~i~Ga~i~~yLLEksRV~~q~~gERNfHIFYqll~G~~~~~~~~~~l~~~~~y~yL~~~~~~~~~~~dd~~~f~ 245 (692)
T cd01385 166 NYRENGMVRGAVVEKYLLEKSRIVSQEKDERNYHVFYYLLLGASEEERKQEFLLKQPDYFYLNQHNLKIEDGEDEKHEFE 245 (692)
T ss_pred EECCCCCEEEEEEEEeecccceeeecCCCCchhHHHHHHHcCCCHHHHHHhcCCChhcCCeeCCCCCccCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888899999999887778999999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCceEEEec---CCCceeecChHHHHHHHHhcCCCHHHHHHhHhhcEEeeC
Q 001346 442 NLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVID---NENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAG 518 (1095)
Q Consensus 442 ~l~~Al~~lG~~~~e~~~i~~iLaAILhLGni~F~~~~---~~~~~~~~~~~~l~~aa~LLgv~~~~L~~~L~~~~~~~~ 518 (1095)
.++.||+.|||+++++..||+|||||||||||+|...+ .++.+.+.+.+.+..||.||||++++|.++|+++++.++
T Consensus 246 ~~~~al~~lG~~~~~~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~ 325 (692)
T cd01385 246 RLKQAMEMVGFLAATQKQIFAVLSAVLLLGNVTYKKRATYHRDESLEVGNPEVVDLLSQLLKVKRETLMEALTKKRTVTV 325 (692)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceeeecccCCCCCceecCCHHHHHHHHHHhCCCHHHHHHHhccCeEEeC
Confidence 99999999999999999999999999999999998753 245678889999999999999999999999999999999
Q ss_pred CceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCC--CccceeEeecccCcccCCC-CChhHHHhhhhhH
Q 001346 519 KDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQ--CTGRSINILDIYGFESFKK-NSFEQFCINYANE 595 (1095)
Q Consensus 519 ~e~i~~~l~~~qA~~~rDalak~LY~~LF~wlV~~IN~~L~~~~~--~~~~~IgILDi~GFE~f~~-NsfEQLcINyaNE 595 (1095)
+|.++++++++||.++||+|||+||++||+|||++||.+|.+... ....+||||||||||+|+. |||||||||||||
T Consensus 326 ~e~i~~~~~~~qa~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~~NsfEQLcINyaNE 405 (692)
T cd01385 326 NETLILPYSLSEAITARDAMAKCLYSALFDWIVLRINHALLNKDDVAVSGLSIGVLDIFGFEDFGRCNSFEQLCINYANE 405 (692)
T ss_pred CCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecCccccCCCCCCHHHHhhHHHHH
Confidence 999999999999999999999999999999999999999987542 2467999999999999999 9999999999999
Q ss_pred HHHHHHHHhhhhhhHhhhhhcCCceeeecccChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCccc
Q 001346 596 RLQQHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFK 675 (1095)
Q Consensus 596 kLQ~~f~~~~F~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~~p~Gll~lLDeE~~~p~~sd~~f~~kl~~~~~~~~~f~ 675 (1095)
+||++|++++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|++||++|++||++++++|++|.
T Consensus 406 kLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~lLdee~~~p~~td~~~l~kl~~~~~~~~~~~ 485 (692)
T cd01385 406 QLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLLDEESNFPHATSQTLLAKFNQQHKDNKYYE 485 (692)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHhcCCCCCHHHHHHHHHHHhCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCC--CCCeEEeccCccccccccchhhhccCcchHHHHHHHhhchHHH-HHHhhcccCCCCCCCCCCCCCCCCCcCccch
Q 001346 676 GER--GRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQV-LQLFASKMLKPSPKPAASSQPGALDTQKQSV 752 (1095)
Q Consensus 676 ~~~--~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l-~~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv 752 (1095)
+++ ...|+|+||||+|+|+++||++||+|.|+++++++|++|++++ ..+|............ .+.........||
T Consensus 486 ~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~--~~~~~~~~~~~tV 563 (692)
T cd01385 486 GPQVKEPAFIIQHYAGKVKYQIKDFREKNMDLMRQDIVALLKGSDSSYVRELIGMDPVAVFRWAV--LRAAFRAMAAPSV 563 (692)
T ss_pred CCCCCCCeEEEEEecceeeecCCCHHHhccccccHHHHHHHHhCccHHHHHHhccCccccccccc--ccccccCccCCcH
Confidence 653 5789999999999999999999999999999999999999986 4677543211100000 0111112234799
Q ss_pred HHHHHHHHHHHHHHHhccCCeeeEeccCCCCCCCcccchhHHHHhhhhhchhHHHHHHhhCCCcccchhhHHHhhhcccc
Q 001346 753 GTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLS 832 (1095)
Q Consensus 753 ~~~fk~qL~~L~~~L~~t~~hfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~ 832 (1095)
+++|+.||++||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|||+|.|||+|++|.+|++||++|++
T Consensus 564 ~~~f~~~L~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~~F~~rY~~L~~ 643 (692)
T cd01385 564 SAQFQTSLNKLMETLGKAEPFFIRCIKSNAEKIENCFDDELVLRQLRYTGMLETVRIRRAGYSVRYTYQDFTQQYRILLP 643 (692)
T ss_pred HHHHHHHHHHHHHHHhccCCeEEEEeCCCCccCcCccCHHHHHHHHHhhchHHHHHHHhccCCccccHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccCCChHHHHHHHHHhcCCCCcceeeceeeeeeccchhHHhhhhhh
Q 001346 833 EKQLSQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRK 880 (1095)
Q Consensus 833 ~~~~~~d~~~~~~~iL~~~~l~~~~yqiGkTKVFLr~g~l~~LE~~R~ 880 (1095)
... .+.++.|+.||+.+++++.+|++|+||||||.+....||+.-.
T Consensus 644 ~~~--~~~~~~~~~il~~~~~~~~~~~iGkTkVFlr~~~~~~Le~~~~ 689 (692)
T cd01385 644 KGA--QSCREDISTLLSKMKIDKRNYQIGKTKIFMRETEKQALDETLH 689 (692)
T ss_pred ccc--cchHHHHHHHHHhcCCCcccEEeeCceEEEcccHHHHHHHHHh
Confidence 653 2345679999999999999999999999999999999998754
No 12
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=2.5e-181 Score=1652.65 Aligned_cols=664 Identities=39% Similarity=0.662 Sum_probs=616.7
Q ss_pred ccCcCCccccccCCchhHHHHHHHHhhcCccccccCCcEEEEcCCCCCC-CCChHHHHHHcccCCC--CCchhHHHHHHH
Q 001346 208 LEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVP-IYGNKFITAYRQKVMD--SPHVYAIADTAY 284 (1095)
Q Consensus 208 ~~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~-~Y~~~~~~~y~~~~~~--~PHiyavA~~Ay 284 (1095)
.+++|||+.|++|||++|||+|+.||.+++||||+|+||||||||+++| +|+++++..|+++... |||||+||++||
T Consensus 3 ~~~v~Dl~~L~~lnE~~vL~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~Ay 82 (717)
T cd01382 3 KKDVEDNCSLMYLNEATLLNNIRVRYSKDKIYTYVANILIAVNPYFDIPKLYSSDTIKKYQGKSLGTLPPHVFAIADKAY 82 (717)
T ss_pred CCCcchhhcCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEECCCCcccccCCHHHHHHhhCCCcCcCCCcHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999998 9999999999988654 799999999999
Q ss_pred HHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHhcCCCcchHHHHHhhhHHHHHhcccccCCCCCCCccccEEEEEEc
Q 001346 285 NEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFS 364 (1095)
Q Consensus 285 ~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~ 364 (1095)
+.|..+++||||||||||||||||++|++|+||+.++++...|+++|+++||||||||||||++|+||||||||++|+||
T Consensus 83 ~~m~~~~~~QsIiisGESGaGKTes~K~il~yLa~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~f~ 162 (717)
T cd01382 83 RDMKVLKMSQSIIVSGESGAGKTENTKFVLRYLTESYGSGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFN 162 (717)
T ss_pred HHHHhcCCCCeEEEecCCCCChhHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHhhccccCCCCCcccceeEEEEEEC
Confidence 99999999999999999999999999999999999987777899999999999999999999999999999999999999
Q ss_pred CCCceeeeEeeeeeccccccccccCCCCcccchhhhhcCCChhhHHhcCCCCCCCCCcccCCC-----------------
Q 001346 365 AFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSE----------------- 427 (1095)
Q Consensus 365 ~~g~i~Ga~i~~yLLEksRVv~~~~gERnfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~----------------- 427 (1095)
.+|+|+||+|++||||||||+.|++||||||||||||+|+++++|++|+|.++.+|+||+++.
T Consensus 163 ~~g~i~Ga~i~~yLLEksRVv~~~~gErNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~~~~~~~~~~ 242 (717)
T cd01382 163 EKNSVVGGFVSHYLLEKSRICVQSAEERNYHIFYRLCAGASEDIREKLHLSSPDDFRYLNRGCTRYFANKETDKQILQNR 242 (717)
T ss_pred CCCCEeEEEEEEEeccCCceEecCCCCCchHHHHHHHhCCCHHHHHHhcCCChhhCeeecCCcccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999752
Q ss_pred ---------ccccCCcchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCceEEEecCC-Cce--eecChHHHHHH
Q 001346 428 ---------CLTIDGVDDAQNFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNE-NHV--EVIADEAVTTA 495 (1095)
Q Consensus 428 ---------~~~~~~~dD~~~f~~l~~Al~~lG~~~~e~~~i~~iLaAILhLGni~F~~~~~~-~~~--~~~~~~~l~~a 495 (1095)
|..++++||+.+|..++.||++|||+++++..||+|||||||||||+|...++. +.+ ...+.+.+..|
T Consensus 243 ~s~~~~~~~~~~~~~~dD~~~f~~~~~Al~~lg~s~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~ 322 (717)
T cd01382 243 KSPEHLKKGALKDPLLDDYGDFQRMCVALKKIGLDDTEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNVKNQSEQSLEYC 322 (717)
T ss_pred cccccccccccCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCceeEeccCCCCCcceecCCCHHHHHHH
Confidence 224577899999999999999999999999999999999999999999875432 223 33467899999
Q ss_pred HHhcCCCHHHHHHhHhhcEEe-----eCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccceeE
Q 001346 496 AMLMGCSSDELMLALSTHKIQ-----AGKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSIN 570 (1095)
Q Consensus 496 a~LLgv~~~~L~~~L~~~~~~-----~~~e~i~~~l~~~qA~~~rDalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~Ig 570 (1095)
|.||||++++|.++|++|++. ++++.+.++++++||.++||+|||+||++||+|||.+||.+|.... ...+||
T Consensus 323 a~LLgv~~~~L~~~l~~r~~~~~~g~~~~~~i~~~l~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~--~~~~Ig 400 (717)
T cd01382 323 AELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKAVYSHLFDHVVSRVNQCFPFET--SSNFIG 400 (717)
T ss_pred HHHcCCCHHHHHHHHhheEEecccccCCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CCcEEE
Confidence 999999999999999999998 7789999999999999999999999999999999999999998643 467999
Q ss_pred eecccCcccCCCCChhHHHhhhhhHHHHHHHHHhhhhhhHhhhhhcCCceeeecccChHHHHHHHhcCCCcccccccccc
Q 001346 571 ILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEES 650 (1095)
Q Consensus 571 ILDi~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~~p~Gll~lLDeE~ 650 (1095)
||||||||+|+.||||||||||||||||++|++++|..||++|.+|||+|++|+|.||++|||||+++|.|||++|||||
T Consensus 401 iLDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~lLDee~ 480 (717)
T cd01382 401 VLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDILDEEN 480 (717)
T ss_pred EEeccccccCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHHHhHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHhCCCCccccCC------------CCCeEEeccCccccccccchhhhccCcchHHHHHHHhhch
Q 001346 651 NFPKATDLTFANKLKQHLGSNSCFKGER------------GRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCT 718 (1095)
Q Consensus 651 ~~p~~sd~~f~~kl~~~~~~~~~f~~~~------------~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~ 718 (1095)
.+|++||.+|++||++.+++|++|..++ +..|+|+||||+|+|+++||++||+|.|+++++++|++|+
T Consensus 481 ~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNkD~l~~~~~~ll~~S~ 560 (717)
T cd01382 481 RLPQPSDQHFTSVVHQKHKDHFRLTIPRKSKLAVHRNLRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESK 560 (717)
T ss_pred cCCCCCHHHHHHHHHHHhcCCcCccCCCccccccccccCCCCCEEEEecceeEeecCCChHHhcCccccHHHHHHHHhCc
Confidence 9999999999999999999988875432 2579999999999999999999999999999999999999
Q ss_pred HHHH-HHhhcccCCCCCCCCCCCCCCCCCcCccchHHHHHHHHHHHHHHHhccCCeeeEeccCCCCCCCcccchhHHHHh
Q 001346 719 CQVL-QLFASKMLKPSPKPAASSQPGALDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQ 797 (1095)
Q Consensus 719 ~~l~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~fk~qL~~L~~~L~~t~~hfIrCIkPN~~k~p~~fd~~~V~~Q 797 (1095)
++++ .+|.......... .+....+..||+++||.||+.||++|++|+||||||||||..+.|+.||..+|++|
T Consensus 561 n~~i~~lf~~~~~~~~~~------~~~~k~~~~tv~~~fk~qL~~Lm~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~Q 634 (717)
T cd01382 561 DKFLRSLFESSTNNNDTK------QKAGKLSFISVGNKFKTQLNLLLEKLRSTGSSFIRCIKPNLKMVSHQFEGAQILSQ 634 (717)
T ss_pred hHHHHHHhcccccccccc------ccccCccCccHHHHHHHHHHHHHHHHhccCCeeeeeeCCCcccCCCCCChHHHHHH
Confidence 9865 6776432111000 00012345799999999999999999999999999999999999999999999999
Q ss_pred hhhhchhHHHHHHhhCCCcccchhhHHHhhhccccccccCCChHHHHHHHHHhcCCCCcceeeceeeeeeccchhHHhhh
Q 001346 798 FRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQLSQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALED 877 (1095)
Q Consensus 798 Lr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~~d~~~~~~~iL~~~~l~~~~yqiGkTKVFLr~g~l~~LE~ 877 (1095)
|||+||||+|||+|.|||+|++|.+|++||+.|++......|++..|++||+.+++++++|++|+||||||.|+++.||+
T Consensus 635 Lr~~GvLE~vri~r~Gyp~R~~f~~F~~ry~~l~~~~~~~~~~~~~~~~iL~~~~~~~~~~~~GkTKVFlr~g~~~~le~ 714 (717)
T cd01382 635 LQCSGMVSVLDLMQGGFPSRASFHELYNMYKKYMPPKLVRLDPRLFCKALFKALGLNENDYKFGLTKVFFRPGKFAEFDQ 714 (717)
T ss_pred HHhcchHHHHHHHHccCchhhhHHHHHHHHHHhCCcccCCCCHHHHHHHHHHHcCCCcccEEecceeEEecccHHHHHHH
Confidence 99999999999999999999999999999999998777677899999999999999999999999999999999999997
Q ss_pred hh
Q 001346 878 RR 879 (1095)
Q Consensus 878 ~R 879 (1095)
..
T Consensus 715 ~~ 716 (717)
T cd01382 715 IM 716 (717)
T ss_pred Hh
Confidence 64
No 13
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.5e-179 Score=1519.76 Aligned_cols=701 Identities=38% Similarity=0.656 Sum_probs=649.0
Q ss_pred ccCcCCccccccCCchhHHHHHHHHhhcCccccccCCcEEEEcCCCCCCCCChHHHHHHcccCCC--CCchhHHHHHHHH
Q 001346 208 LEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYN 285 (1095)
Q Consensus 208 ~~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~~Y~~~~~~~y~~~~~~--~PHiyavA~~Ay~ 285 (1095)
--|++|++-|+.++|++++.|||.||.++.||||+|++||+||||+.++||++++++.|++...- |||+||||+.||+
T Consensus 7 ~~Gv~DfVLle~~~~~~f~~NLrlRf~~g~IYTyIGeV~VsvNPYrql~IYg~~ti~kYkgre~yE~~PHlfAiad~aYr 86 (1001)
T KOG0164|consen 7 EVGVQDFVLLETVSEESFMENLRLRFENGRIYTYIGEVLVSVNPYRQLNIYGPETIEKYKGREFYERPPHLFAIADAAYR 86 (1001)
T ss_pred ccCceeeEeeccccHHHHHHHHHHHHhcCceEEEEccEEEEecchhhcCccCHHHHHHhCCeeecccCchHHHhHHHHHH
Confidence 35899999999999999999999999999999999999999999999999999999999998765 8999999999999
Q ss_pred HHhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHhcCCC-----cchHHHHHhhhHHHHHhcccccCCCCCCCccccEEE
Q 001346 286 EMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGS-----EGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIE 360 (1095)
Q Consensus 286 ~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~~~~-----~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~ 360 (1095)
.|.+..+||||+|||||||||||++|+||+|+|++.+.+ ..+.+.+|+|||||||||||||.||||||||||||.
T Consensus 87 slk~r~rDtcI~ISGESGAGKTEASK~iMqYiAAvtn~~qq~eierVKn~LLqSN~VLEAFGNAKT~RNdNSSRFGKYMD 166 (1001)
T KOG0164|consen 87 SLKRRSRDTCILISGESGAGKTEASKIIMQYIAAVTNASQQGEIERVKNVLLQSNCVLEAFGNAKTNRNDNSSRFGKYMD 166 (1001)
T ss_pred HHHhccCCeEEEEecCCCCCccHHHHHHHHHHHHhcCccccchHHHHHHHHHhcchHHHHhcccccccCCchhhhhccee
Confidence 999999999999999999999999999999999998754 356778999999999999999999999999999999
Q ss_pred EEEcCCCceeeeEeeeeeccccccccccCCCCcccchhhhhcCCChhhHHhcCC-CCCCCCCcccCCCccccCCcchHHH
Q 001346 361 IHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNL-KVANDYNYLNQSECLTIDGVDDAQN 439 (1095)
Q Consensus 361 l~f~~~g~i~Ga~i~~yLLEksRVv~~~~gERnfHIFYqLl~G~~~~~~~~l~L-~~~~~y~yL~~~~~~~~~~~dD~~~ 439 (1095)
|.||-+|..+|+.|.+|||||||||.|.+||||||||||||.|+++.+..+|+| +++..|+||+++ |..+.+++|+.+
T Consensus 167 InFDfKGdPvGG~I~nYLLEKSRVv~Q~~GERNFH~FYQLL~G~~e~~Lr~l~Ler~~~~Y~ylnqg-~~~v~sinD~~d 245 (1001)
T KOG0164|consen 167 INFDFKGDPVGGHITNYLLEKSRVVKQQPGERNFHIFYQLLRGGEEQLLRQLGLERNPQSYNYLNQG-SAKVSSINDASD 245 (1001)
T ss_pred eeccccCCcccchHhHHHHhhhhhhhcCcCcchHHHHHHHHcCCcHHHHHHhccccCcchhhhhhhh-hhhhcccccHHH
Confidence 999999999999999999999999999999999999999999999999999999 589999999998 888999999999
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCceEEEecCCCceeecChHHHHHHHHhcCCCHHHHHHhHhhcEEeeCC
Q 001346 440 FHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGK 519 (1095)
Q Consensus 440 f~~l~~Al~~lG~~~~e~~~i~~iLaAILhLGni~F~~~~~~~~~~~~~~~~l~~aa~LLgv~~~~L~~~L~~~~~~~~~ 519 (1095)
|..+..||.++||+++|++++|+|+|||||||||.|...+ +..-+++...+..+|+||++.+++|.++|+.|++.+++
T Consensus 246 fk~V~~Am~vIgFs~eEVe~v~~iiAavLhLGNv~f~~~e--d~~~~~~~~~l~~~aell~v~~del~~aL~~Rtvaa~~ 323 (1001)
T KOG0164|consen 246 FKAVQKAMRVIGFSEEEVESVLSIIAAVLHLGNVEFADNE--DSSGIVNGAQLKYIAELLSVTGDELERALTSRTVAAGG 323 (1001)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceEEeecC--cccccchhHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999998543 33344555889999999999999999999999999999
Q ss_pred ceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCC----CccceeEeecccCcccCCCCChhHHHhhhhhH
Q 001346 520 DSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQ----CTGRSINILDIYGFESFKKNSFEQFCINYANE 595 (1095)
Q Consensus 520 e~i~~~l~~~qA~~~rDalak~LY~~LF~wlV~~IN~~L~~~~~----~~~~~IgILDi~GFE~f~~NsfEQLcINyaNE 595 (1095)
|.+.+++|++||..+||||||++|+|||+|||.+||+++..... .....||+|||||||+|+.||||||||||+||
T Consensus 324 e~v~k~hn~~qA~YaRDAlAKaiY~RlF~Wiv~rIn~~i~~~~~~~~~~~~~Vigvldiygfeif~~NSFEQfcINYCNE 403 (1001)
T KOG0164|consen 324 EIVLKQHNVEQASYARDALAKAIYSRLFTWIVNRINRSIEVKGVITLRKGNTVIGVLDIYGFEIFQDNSFEQFCINYCNE 403 (1001)
T ss_pred chhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheecccccccccCceEEEEEEeeeEEeecCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987532 12368999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhHhhhhhcCCceeeecccChHHHHHHHhcCCCccccccccccCCCC-CChHHHHHHHHHHhCCCCcc
Q 001346 596 RLQQHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPK-ATDLTFANKLKQHLGSNSCF 674 (1095)
Q Consensus 596 kLQ~~f~~~~F~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~~p~Gll~lLDeE~~~p~-~sd~~f~~kl~~~~~~~~~f 674 (1095)
||||.|++-+++.|||||.+|||+|+.|+|.+|.-++||+|.+..|||+||||||..|+ .||.+|+++|.+++++|++|
T Consensus 404 KLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlailDe~Cl~~G~vtD~tfL~~l~~~~~~H~Hy 483 (1001)
T KOG0164|consen 404 KLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAILDEACLRPGTVTDETFLEKLNQKLKKHPHY 483 (1001)
T ss_pred HHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhhhHHhcCCCccchHHHHHHHHHHhhhCCcc
Confidence 99999999999999999999999999999999999999999999999999999999886 59999999999999999999
Q ss_pred ccCC---------CCCeEEeccCccccccccchhhhccCcchHHHHHHHhhchHHH-HHHhhcccCCCCCCCCCCCCCCC
Q 001346 675 KGER---------GRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQV-LQLFASKMLKPSPKPAASSQPGA 744 (1095)
Q Consensus 675 ~~~~---------~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l-~~lf~~~~~~~~~~~~~~~~~~~ 744 (1095)
.+.. -.+|.|.||||+|+|+|.||++||+|.|.+|+-.+|..|++++ ..+|.........
T Consensus 484 ~sr~~~~~dksl~~~~Fri~HYAG~V~YsV~gFidKN~D~Lf~dlk~~m~~s~~~~l~~~fpeG~~~~~~---------- 553 (1001)
T KOG0164|consen 484 TSRKLKQTDKSLGFSDFRITHYAGDVTYSVEGFIDKNNDLLFQDLKRLMYNSKNPLLKSLFPEGNPDIAE---------- 553 (1001)
T ss_pred hhhhccccccccCccceeEEEeccceEEEEEeeeccCccHHHHHHHHHHHhcCCchHHHhCCCCChhHHh----------
Confidence 6421 2689999999999999999999999999999999999999986 5677532210000
Q ss_pred CCcCccchHHHHHHHHHHHHHHHhccCCeeeEeccCCCCCCCcccchhHHHHhhhhhchhHHHHHHhhCCCcccchhhHH
Q 001346 745 LDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFA 824 (1095)
Q Consensus 745 ~~~~~~tv~~~fk~qL~~L~~~L~~t~~hfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~ 824 (1095)
...+..|++++||.++..||..|.+-+|+||||||||+.+.|+.||...|.+|.+|+|+||.+|++|+||.+|++|+.|+
T Consensus 554 ~tkRP~Tagt~Fk~Sm~~Lv~nL~sKeP~YvRcikPNe~k~~~~fd~e~~~hqv~ylGLleNvrVrrAgfahRq~Y~~FL 633 (1001)
T KOG0164|consen 554 VTKRPPTAGTLFKNSMAALVKNLASKEPNYVRCIKPNEHKQPGQFDEERVRHQVRYLGLLENVRVRRAGFAHRQPYERFL 633 (1001)
T ss_pred hhcCCCcHHHHHHHHHHHHHHHHhhcCCCeEEeeccccccCccccchhhhHHHHHHHHHHhhhhhhhcccccccchHHHH
Confidence 02234799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccccccccC---CChHHHHHHHHHhcCCCCcceeeceeeeeeccc-hhHHhhhhhhhHHHH-HHHHHHHHhhhhhh
Q 001346 825 GRYGVLLSEKQLS---QDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSG-QLAALEDRRKQVLQA-IIRLQKCFRGYQAR 899 (1095)
Q Consensus 825 ~RY~~L~~~~~~~---~d~~~~~~~iL~~~~l~~~~yqiGkTKVFLr~g-~l~~LE~~R~~~l~a-ai~IQa~~Rg~~aR 899 (1095)
.||+++++.+|+. .+.++.|..+++..++. .++.+|+||||+|.. ++..||++|..++.. ++.||+.||||++|
T Consensus 634 ~RYKmi~~~TWPn~~~g~dkd~v~vL~e~~g~~-~d~a~G~TKIFIRsPrTLF~lEe~r~~~l~~lvtllQK~~RG~~~R 712 (1001)
T KOG0164|consen 634 LRYKMICESTWPNWRGGSDKDGVKVLLEHLGLA-GDVAFGRTKIFIRSPRTLFALEEQRAERLPSLVTLLQKAWRGWLAR 712 (1001)
T ss_pred HHHHhhCcccCCCCCCCCchhHHHHHHHHhccc-hhhhcCceeEEEecchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998874 45577888899998887 789999999999984 799999999988764 67899999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHH
Q 001346 900 SRFRELCNGVITLQSFARGENTRR 923 (1095)
Q Consensus 900 r~y~~lr~aai~IQs~~Rg~~aRr 923 (1095)
.+|++|++++++|+ |||.+..+-
T Consensus 713 ~ry~rmka~~~ii~-wyR~~K~ks 735 (1001)
T KOG0164|consen 713 QRYRRMKASATIIR-WYRRYKLKS 735 (1001)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHH
Confidence 99999999999998 888555443
No 14
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=8.3e-179 Score=1630.19 Aligned_cols=665 Identities=54% Similarity=0.870 Sum_probs=629.4
Q ss_pred CCCcccCcCCccccccCCchhHHHHHHHHhhcCccccccCCcEEEEcCCCCCCCCChHHHHHHcccCCC--CCchhHHHH
Q 001346 204 NPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIAD 281 (1095)
Q Consensus 204 np~~~~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~~Y~~~~~~~y~~~~~~--~PHiyavA~ 281 (1095)
||+..++++||+.|++|||++||++|+.||.+++||||+|++|||||||+++|+|+++++..|+++... |||||+||+
T Consensus 1 np~~~~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~y~~~~~~~y~~~~~~~~~PHifavA~ 80 (677)
T smart00242 1 NPPKFEGVEDLVLLTYLNEPAVLHNLKKRYLKDLIYTYIGLVLVAVNPYKQLPIYTDEVIKKYRGKSRGELPPHVFAIAD 80 (677)
T ss_pred CCcccCCcchhhcCCCCCHHHHHHHHHHHHhhCCccccccceEEEecCCccCCCCCHHHHHHccCCCCCCCCCCHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999999999988643 899999999
Q ss_pred HHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHhcCC---CcchHHHHHhhhHHHHHhcccccCCCCCCCccccE
Q 001346 282 TAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGG---SEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKL 358 (1095)
Q Consensus 282 ~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~~~---~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~ 358 (1095)
+||+.|+.+++||||||||||||||||++|++|+||+.++++ ...|+++|+++||||||||||||++|+||||||||
T Consensus 81 ~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~~~~~i~~~i~~~n~iLEAFGNAkT~~N~NSSRfgk~ 160 (677)
T smart00242 81 NAYRNMLNDKENQSIIISGESGAGKTENTKKIMQYLAAVSGSNTSVGSVEDQILESNPILEAFGNAKTVRNNNSSRFGKF 160 (677)
T ss_pred HHHHHHHhcCCCceEEEecCCCCcchHHHHHHHHHHHhhcCCCCccccHHHHHHHHHHHHHHhhccccCCCCCccchhee
Confidence 999999999999999999999999999999999999999875 35799999999999999999999999999999999
Q ss_pred EEEEEcCCCceeeeEeeeeeccccccccccCCCCcccchhhhhcCCChhhHHhcCCCCCCCCCcccCCCccccCCcchHH
Q 001346 359 IEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQ 438 (1095)
Q Consensus 359 i~l~f~~~g~i~Ga~i~~yLLEksRVv~~~~gERnfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~ 438 (1095)
++|+|+.+|+|+||+|.+||||||||+.|++||||||||||||+|++++++++|+|.++.+|+||++++|..++++||++
T Consensus 161 ~~l~f~~~g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~ 240 (677)
T smart00242 161 IEIHFDAKGKIVGAKIETYLLEKSRVVSQAKGERNYHIFYQLLAGASEELKKELGLKSPEDYRYLNQGGCLSVDGIDDAE 240 (677)
T ss_pred EEEEECCCCcEeEEEEEEeecCCceEEecCCCCCchHHHHHHHcCCCHHHHHhcCCCChhhCceeCCCCCccCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCceEEEecCCCc-eeecChHHHHHHHHhcCCCHHHHHHhHhhcEEee
Q 001346 439 NFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENH-VEVIADEAVTTAAMLMGCSSDELMLALSTHKIQA 517 (1095)
Q Consensus 439 ~f~~l~~Al~~lG~~~~e~~~i~~iLaAILhLGni~F~~~~~~~~-~~~~~~~~l~~aa~LLgv~~~~L~~~L~~~~~~~ 517 (1095)
+|..++.||+.|||+++++..||+|||||||||||+|...++++. ..+.+.+.++.||.||||++++|.++|+++++.+
T Consensus 241 ~f~~~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 320 (677)
T smart00242 241 EFKETLNAMRVLGFSEEEQESIFKILAAILHLGNIEFEEGRNDNAASTVKDKEELENAAELLGVDPEELEKALTKRKIKT 320 (677)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceeEEecCCCCcccccCCHHHHHHHHHHhCCCHHHHHHHhcccEEEe
Confidence 999999999999999999999999999999999999997654332 3478899999999999999999999999999999
Q ss_pred CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccceeEeecccCcccCCCCChhHHHhhhhhHHH
Q 001346 518 GKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERL 597 (1095)
Q Consensus 518 ~~e~i~~~l~~~qA~~~rDalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNEkL 597 (1095)
++|.+.+++++++|.++||+|||+||++||+|||.+||.+|.+.. ....+||||||||||+|+.|||||||||||||+|
T Consensus 321 ~~e~~~~~~~~~~a~~~rd~lak~lY~~lF~wiV~~iN~~l~~~~-~~~~~IgiLDifGFE~f~~NsfEQLcINyaNEkL 399 (677)
T smart00242 321 GGEVITKPLNVEQALDARDALAKALYSRLFDWLVKRINKSLSFKD-GSTYFIGVLDIYGFEIFEVNSFEQLCINYANEKL 399 (677)
T ss_pred CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCceEEEEEecccccccccCCHHHHHhHhhHHHH
Confidence 999999999999999999999999999999999999999998754 4578999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhHhhhhhcCCceeeecccChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCccccC
Q 001346 598 QQHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGE 677 (1095)
Q Consensus 598 Q~~f~~~~F~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~~p~Gll~lLDeE~~~p~~sd~~f~~kl~~~~~~~~~f~~~ 677 (1095)
|++|++++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||.+|++||++|++||++++++|++|..+
T Consensus 400 q~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLdee~~~~~~td~~~~~kl~~~~~~~~~~~~~ 479 (677)
T smart00242 400 QQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLDEECRFPKATDQTFLEKLNQTHEKHPHFSKP 479 (677)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred ---CCCCeEEeccCccccccccchhhhccCcchHHHHHHHhhchHHHH-HHhhcccCCCCCCCCCCCCCCCCCcCccchH
Q 001346 678 ---RGRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSPKPAASSQPGALDTQKQSVG 753 (1095)
Q Consensus 678 ---~~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~ 753 (1095)
.+..|+|+||||+|+|+++||++||+|.++++++++|++|+++++ .+|+...... +...+..||+
T Consensus 480 ~~~~~~~F~I~H~AG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~-----------~~~~~~~tv~ 548 (677)
T smart00242 480 RKKGRTEFIIKHYAGDVTYDVTGFLEKNKDTLFKDLIELLQSSKNPLIASLFPSGESNA-----------GSKKRFRTVG 548 (677)
T ss_pred CCCCCCeEEEEecceeEeecCccHHHHccchhhHHHHHHHHhCCcHHHHHHhccccccc-----------cccCCCCcHH
Confidence 367899999999999999999999999999999999999999864 6776433110 0123457999
Q ss_pred HHHHHHHHHHHHHHhccCCeeeEeccCCCCCCCcccchhHHHHhhhhhchhHHHHHHhhCCCcccchhhHHHhhhccccc
Q 001346 754 TKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSE 833 (1095)
Q Consensus 754 ~~fk~qL~~L~~~L~~t~~hfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~ 833 (1095)
++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|||+|.|||+|++|.+|+.||++|++.
T Consensus 549 ~~fk~~L~~L~~~l~~t~~hfIRCIKPN~~k~~~~Fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~ry~~L~~~ 628 (677)
T smart00242 549 SQFKESLNKLMDTLNSTNPHFIRCIKPNEEKKPGDFDSSLVLHQLRYLGVLETIRIRRAGFPYRLPFDEFLQRYRVLLPD 628 (677)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEeCCCcccCcccccHHHHHHHHHhcccHHHHHHHHccccceecHHHHHHHHHHhCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccc--CCChHHHHHHHHHhcCCCCcceeeceeeeeeccchhHHhhhhhh
Q 001346 834 KQL--SQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRK 880 (1095)
Q Consensus 834 ~~~--~~d~~~~~~~iL~~~~l~~~~yqiGkTKVFLr~g~l~~LE~~R~ 880 (1095)
... ..|+++.|+.||+.++++...|++|+||||||.+++..||+.|+
T Consensus 629 ~~~~~~~~~k~~~~~iL~~~~~~~~~~~iGkTkVFlk~~~~~~Le~~R~ 677 (677)
T smart00242 629 TWPPWGGDAKEACEALLQSLGLDEDEYQLGKTKVFLRPGQLAELEELRE 677 (677)
T ss_pred cccccCCCHHHHHHHHHHhcCCCcccEEecCceEeECccHHHHHHhhcC
Confidence 654 34689999999999999999999999999999999999999874
No 15
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=1.1e-177 Score=1603.82 Aligned_cols=635 Identities=40% Similarity=0.670 Sum_probs=595.7
Q ss_pred CcCCccccccCCchhHHHHHHHHhhcCccccccCCcEEEEcCCCCCCCCChHHHHHHcccCCC--CCchhHHHHHHHHHH
Q 001346 210 GVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNEM 287 (1095)
Q Consensus 210 ~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~~Y~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m 287 (1095)
++|||+.|++|||++|||+|+.||.+++||||+|++|||||||+++|+|+++++..|+++... |||||+||+.||+.|
T Consensus 1 ~~~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m 80 (653)
T cd01379 1 DMDDLATLEVLDEDTIVEQLQKRYETNQIYTYVGDILIAVNPFQQLGLYTTQHSRLYTGQKRSSNPPHIFAIADAAYQSL 80 (653)
T ss_pred CcchhhcCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCCCCCHHHHHhhcCCCCCCCCCcHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999999999999999999999886543 899999999999999
Q ss_pred hhCCCceEEEEcCCCCCChhhHHHHHHHHHHHhcCC-CcchHHHHHhhhHHHHHhcccccCCCCCCCccccEEEEEEcCC
Q 001346 288 MGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGG-SEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAF 366 (1095)
Q Consensus 288 ~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~~~-~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~~~ 366 (1095)
...++||||||||||||||||++|++|+||+.++++ ...|+++|+++||||||||||||++||||||||||++|+|+.+
T Consensus 81 ~~~~~~QsIiisGESGsGKTet~K~l~~yL~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~f~~~ 160 (653)
T cd01379 81 VTYNQDQCIVISGESGSGKTESAHLLVQQLTVLGKANNRTLQEKILQVNSLVEAFGNARTGINDNSSRFGKYLEMKFTRS 160 (653)
T ss_pred HhcCCCceEEEecCCCCCchHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhccCcCCCCCcccceeEEEEEECCC
Confidence 999999999999999999999999999999998754 3479999999999999999999999999999999999999999
Q ss_pred CceeeeEeeeeeccccccccccCCCCcccchhhhhcCCChhhH-HhcCCCCCCCCCcccCCCccccCCcc----hHHHHH
Q 001346 367 GKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLK-ERLNLKVANDYNYLNQSECLTIDGVD----DAQNFH 441 (1095)
Q Consensus 367 g~i~Ga~i~~yLLEksRVv~~~~gERnfHIFYqLl~G~~~~~~-~~l~L~~~~~y~yL~~~~~~~~~~~d----D~~~f~ 441 (1095)
|+|+||+|++||||||||+.|++||||||||||||+|++++++ +.|+|.+..+|+||++++|..+++++ |+.+|.
T Consensus 161 g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~~~~L~~~~~~~yL~~~~~~~~~~~~~~~~~~~~f~ 240 (653)
T cd01379 161 GAVVGARISEYLLEKSRVVHQAEGEKNFHIFYYIYAGLAEEKKLAEYKLPESKTPRYLQNEATRVVQDITSNKFYKDQFE 240 (653)
T ss_pred CcEEEEEEEEEeccCCceeccCCCCCceeeHHHHHhCCCHHHHHHhcCCCCccccCccCCCCccccCCCccchhHHHHHH
Confidence 9999999999999999999999999999999999999998776 78999999999999999887666654 578999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCceEEEecC---CCceeecChHHHHHHHHhcCCCHHHHHHhHhhcEEeeC
Q 001346 442 NLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDN---ENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAG 518 (1095)
Q Consensus 442 ~l~~Al~~lG~~~~e~~~i~~iLaAILhLGni~F~~~~~---~~~~~~~~~~~l~~aa~LLgv~~~~L~~~L~~~~~~~~ 518 (1095)
.++.||..|||+++++..||+|||||||||||+|...++ .+.+.+.+.+.++.||+||||+.++|.++|+++++.++
T Consensus 241 ~~~~al~~lg~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~i~~~~~l~~~A~LLgv~~~~L~~~L~~~~~~~~ 320 (653)
T cd01379 241 QIEQCFRVIGFTDEEVGSVYRILAAILNLGDIEFGSVASEHQTDKSRVSNVAALENAASLLCIRSDELQEALTSHCVVTR 320 (653)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEeccccCCCcccccCCHHHHHHHHHHhCCCHHHHHHHhcccEEEeC
Confidence 999999999999999999999999999999999987543 23567889999999999999999999999999999999
Q ss_pred CceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCC----CccceeEeecccCcccCCCCChhHHHhhhhh
Q 001346 519 KDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQ----CTGRSINILDIYGFESFKKNSFEQFCINYAN 594 (1095)
Q Consensus 519 ~e~i~~~l~~~qA~~~rDalak~LY~~LF~wlV~~IN~~L~~~~~----~~~~~IgILDi~GFE~f~~NsfEQLcINyaN 594 (1095)
++.+.++++++||.++||||||+||++||+|||.+||.+|.+... ....+||||||||||+|+.||||||||||||
T Consensus 321 ge~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaN 400 (653)
T cd01379 321 GETIVRHNTVEKATDARDAMAKALYGRLFSWIVNRINSLLKHDRNASNSSDQLNVGILDIFGFENFKKNSFEQLCINIAN 400 (653)
T ss_pred CceeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccceEEEEeccccccCCCCCHHHHHhhhhH
Confidence 999999999999999999999999999999999999999987532 2457999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhHhhhhhcCCceeeecccChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCcc
Q 001346 595 ERLQQHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCF 674 (1095)
Q Consensus 595 EkLQ~~f~~~~F~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~~p~Gll~lLDeE~~~p~~sd~~f~~kl~~~~~~~~~f 674 (1095)
||||++|++++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||.+|+|||++|++||+..+++ +.|
T Consensus 401 EkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~lLdee~~~~~~td~~~~~kl~~~~~~-~~~ 479 (653)
T cd01379 401 EQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALLDEESRFPQATDQTLVEKFEDNLKS-KFF 479 (653)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHHHHHHhcCCCCCHHHHHHHHHHhcCC-CCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988865 445
Q ss_pred ccC--CCCCeEEeccCccccccccchhhhccCcchHHHHHHHhhchHHHHHHhhcccCCCCCCCCCCCCCCCCCcCccch
Q 001346 675 KGE--RGRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVLQLFASKMLKPSPKPAASSQPGALDTQKQSV 752 (1095)
Q Consensus 675 ~~~--~~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l~~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv 752 (1095)
..+ ....|+|+||||+|+|+++||++||+|.++++++++|++| +||
T Consensus 480 ~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S--------------------------------~tv 527 (653)
T cd01379 480 WRPKRVELSFGIHHYAGKVLYNASGFLEKNRDFLPADIVLLLRSS--------------------------------QTV 527 (653)
T ss_pred cCCCCCCCceEEEEeceeEeecCCCHHHhccccccHHHHHHHHhC--------------------------------cHH
Confidence 443 2568999999999999999999999999999999999766 379
Q ss_pred HHHHHHHHHHHHHHHhccCCeeeEeccCCCCCCCcccchhHHHHhhhhhchhHHHHHHhhCCCcccchhhHHHhhhcccc
Q 001346 753 GTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLS 832 (1095)
Q Consensus 753 ~~~fk~qL~~L~~~L~~t~~hfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~ 832 (1095)
+++||.||++||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|||+|.|||+|++|.+|+.||++|++
T Consensus 528 ~~~fr~~l~~L~~~l~~t~~hfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~rY~~l~~ 607 (653)
T cd01379 528 ASYFRYSLMDLLSKMVVGQPHFVRCIKPNEDRQAKKFDAEKVLKQLRYTGILETARIRRQGFSHRILFANFIRRYCFLAY 607 (653)
T ss_pred HHHHHHHHHHHHHHHhccCCceEEeeCCCcccCccccCHHHHHHHHHHcchHHHHHHHHcCCCccccHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cccc-CCChHHHHHHHHHhcCCCCcceeeceeeeeeccchhHHhhhhh
Q 001346 833 EKQL-SQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRR 879 (1095)
Q Consensus 833 ~~~~-~~d~~~~~~~iL~~~~l~~~~yqiGkTKVFLr~g~l~~LE~~R 879 (1095)
.... ..+.+..|..||+.+++ ++|++|+||||||.+++..||.+|
T Consensus 608 ~~~~~~~~~~~~~~~il~~~~~--~~~~~GktkvFlk~~~~~~le~~~ 653 (653)
T cd01379 608 RFEEEPVSSPESCALILEKAKL--DNWALGKTKVFLKYYHVEQLNLMR 653 (653)
T ss_pred ccccccCChHHHHHHHHHhCCC--CCEEecceEEEEecCHHHHHHhcC
Confidence 6543 34678899999998776 579999999999999999999865
No 16
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=100.00 E-value=6.4e-177 Score=1617.76 Aligned_cols=669 Identities=50% Similarity=0.813 Sum_probs=621.2
Q ss_pred CcCCccccccCCchhHHHHHHHHhhcCccccccCCcEEEEcCCCCCCCCChHHHHHHcccCCC--CCchhHHHHHHHHHH
Q 001346 210 GVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNEM 287 (1095)
Q Consensus 210 ~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~~Y~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m 287 (1095)
+++||+.|++|||++||++|+.||.+++||||+|++|||||||+++|+|++++++.|+++... |||||+||++||+.|
T Consensus 1 ~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~~y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m 80 (679)
T cd00124 1 GVDDLASLPHLNEATVLNNLRQRYKKDLIYTYAGPILIAVNPYKDLPNYGPETIRKYRGKSRSELPPHVFAIADRAYRNM 80 (679)
T ss_pred CCcchhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCCCCCHHHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999999999987654 899999999999999
Q ss_pred hhCCCceEEEEcCCCCCChhhHHHHHHHHHHHhcCC-CcchHHHHHhhhHHHHHhcccccCCCCCCCccccEEEEEEcCC
Q 001346 288 MGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGG-SEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAF 366 (1095)
Q Consensus 288 ~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~~~-~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~~~ 366 (1095)
+.+++||||||||||||||||++|++|+||+.++++ ...|+++|+++||||||||||||++|+||||||||++|+|+.+
T Consensus 81 ~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~~~i~~~i~~~n~iLEaFGNAkT~~N~NSSRfGk~~~l~f~~~ 160 (679)
T cd00124 81 LRDRRNQSIIISGESGAGKTENTKLIMKYLASLAGSNDTGIEEKILAANPILEAFGNAKTVRNNNSSRFGKFIELQFDET 160 (679)
T ss_pred HhcCCCceEEEecCCCCCchHHHHHHHHHHHhccCCCcchHHHHHHHHhHHHHHhcccccCCCCCcccceeEEEEEECCC
Confidence 999999999999999999999999999999999875 4579999999999999999999999999999999999999999
Q ss_pred CceeeeEeeeeeccccccccccCCCCcccchhhhhcCCChhhHHhcCCCCCCCCCcccCCCccccCCcchHHHHHHHHHH
Q 001346 367 GKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLMEA 446 (1095)
Q Consensus 367 g~i~Ga~i~~yLLEksRVv~~~~gERnfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~l~~A 446 (1095)
|+|+||+|.+||||||||+.|++||||||||||||+|+++++|++|+|+++.+|+||++++|..++++||+++|..++.|
T Consensus 161 g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~a 240 (679)
T cd00124 161 GKISGAKITTYLLEKSRVVSQEPGERNFHIFYQLLAGASPEERKKLGLKRPESYRYLNQGGCNDVDGIDDAEEFEELKEA 240 (679)
T ss_pred CcEeEEEEEEEEcccceeeccCCCCCchhHHHHHHcCCCHHHHHhcCCCCcccCeeeCCCCcccCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHhcCceEEEecCCCc--eeecChHHHHHHHHhcCCCHHHHHHhHhhcEEeeCCceEEe
Q 001346 447 LDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENH--VEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKDSIAK 524 (1095)
Q Consensus 447 l~~lG~~~~e~~~i~~iLaAILhLGni~F~~~~~~~~--~~~~~~~~l~~aa~LLgv~~~~L~~~L~~~~~~~~~e~i~~ 524 (1095)
|+.|||+++++..||+|||||||||||+|...++++. +.+.+.+.++.||.||||+.++|.++|+++++.++++.+.+
T Consensus 241 l~~lg~~~~e~~~i~~iLaaILhLGni~f~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~~~~~~ 320 (679)
T cd00124 241 LKSLGFSEEEIESIFRILAAILHLGNIEFKSVGGEGQEAAEVKNTEVLSKAAELLGLDPEELEEALTYKVTKVGGEVITI 320 (679)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCcceeecCCHHHHHHHHHHhCCCHHHHHHHhhccEEEeCCceEEe
Confidence 9999999999999999999999999999997655443 77889999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccceeEeecccCcccCCCCChhHHHhhhhhHHHHHHHHHh
Q 001346 525 KLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNRH 604 (1095)
Q Consensus 525 ~l~~~qA~~~rDalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~ 604 (1095)
+++++||.++||+|||+||++||+|||.+||.+|.+.. ....+||||||||||+|+.|||||||||||||+||++|+++
T Consensus 321 ~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~-~~~~~IgiLDi~GFE~f~~NsfEQLcINy~NEkLq~~f~~~ 399 (679)
T cd00124 321 PLTKEEAVDSRDSLAKALYSRLFDWIVSRINSSLKPKD-GRSLFIGILDIFGFEIFEKNSFEQLCINYANEKLQQFFNQH 399 (679)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCceeeEEeccccccCCCCCHHHHhcccchHHHHHHHHHH
Confidence 99999999999999999999999999999999998753 35679999999999999999999999999999999999999
Q ss_pred hhhhhHhhhhhcCCceeeecccChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCcccc---CCCCC
Q 001346 605 LFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKG---ERGRA 681 (1095)
Q Consensus 605 ~F~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~~p~Gll~lLDeE~~~p~~sd~~f~~kl~~~~~~~~~f~~---~~~~~ 681 (1095)
+|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||.+|+++|.+|++||++.+++|++|.. ..+..
T Consensus 400 ~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lLdee~~~~~~~d~~~~~kl~~~~~~~~~~~~~~~~~~~~ 479 (679)
T cd00124 400 VFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLDEECLFPKGTDETFLEKLNNKLKSNNAFYPAKKNAPTE 479 (679)
T ss_pred HHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCcccccCCCCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999998632 23579
Q ss_pred eEEeccCccccccccchhhhccCcchHHHHHHHhhchHHH-HHHhhcccCCCCCCCCCCCCCCCCCcCccchHHHHHHHH
Q 001346 682 FSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQV-LQLFASKMLKPSPKPAASSQPGALDTQKQSVGTKFKGQL 760 (1095)
Q Consensus 682 F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l-~~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~fk~qL 760 (1095)
|+|+||||+|+|+++||++||+|.++++++++|++|++++ ..+|.......+..+......+....+..||+++|+.||
T Consensus 480 F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~qL 559 (679)
T cd00124 480 FTIKHYAGDVTYDARGFLEKNKDVLSPELVSLLKSSSNPFIRELFESELSKTGNSSTGSTSSKGKKKKGQTVGSQFRTSL 559 (679)
T ss_pred eEEEeeceeEEecCCCHHHhcCCcccHHHHHHHHhCCcHHHHHHhccccccccccccccccccccccCCCcHHHHHHHHH
Confidence 9999999999999999999999999999999999999986 467765332111100000111112345689999999999
Q ss_pred HHHHHHHhccCCeeeEeccCCCCCCCcccchhHHHHhhhhhchhHHHHHHhhCCCcccchhhHHHhhhccccccccCCC-
Q 001346 761 FKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQLSQD- 839 (1095)
Q Consensus 761 ~~L~~~L~~t~~hfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~~d- 839 (1095)
+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|||+|.|||+|++|.+|++||++|++......+
T Consensus 560 ~~L~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~eF~~rY~~L~~~~~~~~~~ 639 (679)
T cd00124 560 DALMATLNSTEPHFIRCIKPNEEKKPNAFDSGKVLQQLRYLGILETIRIRRLGFSVRIPFDEFLSRYRFLAPDLLEKVSL 639 (679)
T ss_pred HHHHHHHhcCCCeEEEEECCCcccCCCccChHHHHHHHHHhchHHHHHHHHccCCceeeHHHHHHHHHHhCcccccccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987765332
Q ss_pred hHHHHHHHHHhcCCCCcceeeceeeeeeccchhHHhhhhh
Q 001346 840 PLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRR 879 (1095)
Q Consensus 840 ~~~~~~~iL~~~~l~~~~yqiGkTKVFLr~g~l~~LE~~R 879 (1095)
....|..+|..+++++++|++|+||||||.+++..||.+|
T Consensus 640 ~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~r 679 (679)
T cd00124 640 TKKQVECLLELLGLPKDEWQVGKTKVFLKEGQLSELEKMR 679 (679)
T ss_pred cHHHHHHHHHhcCCCccCEEecCCeEEECcCHHHHHhccC
Confidence 2334999999999999999999999999999999999875
No 17
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=100.00 E-value=7.3e-176 Score=1606.85 Aligned_cols=666 Identities=30% Similarity=0.474 Sum_probs=594.0
Q ss_pred cCCccccccCCchhHHHHHHHHhhcCccccccCCcEEEEcCCCCCCCCChHHHHHHcccCCC--CCchhHHHHHHHHHHh
Q 001346 211 VDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNEMM 288 (1095)
Q Consensus 211 ~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~~Y~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m~ 288 (1095)
||||+.|++|||++|||+|+.||.+++||||+|++|||||||+.+|+|+++++..|+++... |||||+||+.||+.|+
T Consensus 2 v~Dl~~L~~l~E~~il~~L~~Ry~~~~IYT~~G~iLIavNPyk~l~iY~~~~~~~y~~~~~~~~pPHifaiA~~Ay~~m~ 81 (767)
T cd01386 2 VEDLASLVYLNESSVLHTLRQRYAANLIHTCAGPDLLVLNPMAPLALYSEKVPSMFRGCKAEDMPPHIYSLAQTAYRALL 81 (767)
T ss_pred cchhhcCCCCCHHHHHHHHHHHHcCCCCeEeECCeEEEECCCCCCCCCCHHHHHHHhcCCcCCCCCCHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999988654 8999999999999999
Q ss_pred hCCCceEEEEcCCCCCChhhHHHHHHHHHHHhcCCCc--chHHHHHhhhHHHHHhcccccCCCCCCCccccEEEEEEcCC
Q 001346 289 GDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGSE--GIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAF 366 (1095)
Q Consensus 289 ~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~~~~~--~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~~~ 366 (1095)
.+++||||||||||||||||++|+||+||+.++++.+ ...++|+++||||||||||||++||||||||||++|+|+.+
T Consensus 82 ~~~~~QsIiiSGESGAGKTe~tK~i~~yla~~~~~~~~~~~~e~i~~~npiLEAFGNAkT~rNdNSSRFGK~i~l~F~~~ 161 (767)
T cd01386 82 ETRRDQSIIFLGRSGAGKTTSCKHALEYLALAAGSVDGRVSVEKVRALFTILEAFGNVSTALNGNATRFTQILSLDFDQT 161 (767)
T ss_pred HcCCCceEEEecCCCCCcHHHHHHHHHHHHhccCCCCcccHHHHHHhhchHHHHhhccCcCCCCCcCcceeEEEEEECCC
Confidence 9999999999999999999999999999999987532 23468999999999999999999999999999999999999
Q ss_pred CceeeeEeeeeeccccccccccCCCCcccchhhhhcCCChhhHHhcCCCCCCCCCcccCCC-ccccCCcchHHHHHHHHH
Q 001346 367 GKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSE-CLTIDGVDDAQNFHNLME 445 (1095)
Q Consensus 367 g~i~Ga~i~~yLLEksRVv~~~~gERnfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~-~~~~~~~dD~~~f~~l~~ 445 (1095)
|.|+||+|++|||||||||.|++||||||||||||+|+++++|++|+|.+..++.++.... +...++++|+++|..++.
T Consensus 162 g~i~Ga~i~~yLLEKSRVv~q~~gERNFHIFYqLlaG~~~~~~~~l~L~~~~~~~~~~~~~~~~~~d~~~D~~~f~~~~~ 241 (767)
T cd01386 162 GQIASASLQTMLLERSRVARRPNGETNFVVFSQLLAGVDGDLRTELHLEQMAESSSFGMGGLSKPEDKQKAAIDFSRLQQ 241 (767)
T ss_pred CcEeEEEEEEEecccCceeecCCCCCcchhHHHHHhCCCHHHHHHhcCCCccccchhhcCCCCCCcCcccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998755543333322 334567899999999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHHhcCceEEEecCCCceeecChHHHHHHHHhcCCCHHHHHHhHhhcEEeeCCc-----
Q 001346 446 ALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKD----- 520 (1095)
Q Consensus 446 Al~~lG~~~~e~~~i~~iLaAILhLGni~F~~~~~~~~~~~~~~~~l~~aa~LLgv~~~~L~~~L~~~~~~~~~e----- 520 (1095)
||+.|||+++++..||+|||||||||||+|... .+.+.+.+.+.++.||.||||+.++|.++|+++++..+.+
T Consensus 242 Al~~lGfs~~e~~~If~iLaaILhLGNi~f~~~--~~~~~~~~~~~~~~vA~LLgv~~~~L~~al~~~~~~~~~~~~~~~ 319 (767)
T cd01386 242 AMEVLGISEGEQRAIWRVLAAIYHLGAAGATKV--AGRKQFARPEWAQKAAELLGCPLEELSSATFKHTLRGGINQMTTG 319 (767)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhccCceeeec--CCccccCCHHHHHHHHHHhCCCHHHHHHHhcccEEeecceeeecc
Confidence 999999999999999999999999999999862 3456788899999999999999999999999998876643
Q ss_pred --------eEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccceeEeecccCcccCCC------CChh
Q 001346 521 --------SIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKK------NSFE 586 (1095)
Q Consensus 521 --------~i~~~l~~~qA~~~rDalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~------NsfE 586 (1095)
.+..++++.||.++||||||+||++||+|||.+||.+|.+.. ....+||||||||||+|+. ||||
T Consensus 320 ~~~~~~~~~~~~~~~~~~A~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~-~~~~~IgiLDIfGFE~f~~n~~~~~NsfE 398 (767)
T cd01386 320 PQRPGLSDTETSSGLKMTAVECLEGMASGLYSELFAAVVSLINRSISSSH-HSIASIMLVDTPGFQNPASQGKDRAATFE 398 (767)
T ss_pred ccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCcEEEEEecccccccccccccCCCCHH
Confidence 233467889999999999999999999999999999998754 3457999999999999974 8999
Q ss_pred HHHhhhhhHHHHHHHHHhhhhhhHhhhhhcCCceeeecc-cChHHHHHHHhcCC--------------CccccccccccC
Q 001346 587 QFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVEF-EDNEECLNLIEKKP--------------LGVLSLLDEESN 651 (1095)
Q Consensus 587 QLcINyaNEkLQ~~f~~~~F~~eq~eY~~EgI~~~~i~f-~dN~~~ldLie~~p--------------~Gll~lLDeE~~ 651 (1095)
|||||||||+|||+||+++|+.||++|.+|||+|+.+.+ .||++|||||+++| .|||++|||||+
T Consensus 399 QLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~~~~~~~~~~~~~~~GIl~lLDEec~ 478 (767)
T cd01386 399 ELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQQVVVPAGLRAEDARGLLWLLDEEAL 478 (767)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhcccccccccchhhccCCCchhhhhhHhhc
Confidence 999999999999999999999999999999999987655 69999999999865 599999999999
Q ss_pred CCCCChHHHHHHHHHHhCCCCcccc--------CCCCCeEEeccCcc--ccccccchhhhccCcc-hHHHHHHHhhchHH
Q 001346 652 FPKATDLTFANKLKQHLGSNSCFKG--------ERGRAFSIRHYAGE--VPYDTNGFLEKNRDPL-QTDIIQLLSSCTCQ 720 (1095)
Q Consensus 652 ~p~~sd~~f~~kl~~~~~~~~~f~~--------~~~~~F~I~HyaG~--V~Y~~~gfleKN~D~l-~~d~~~ll~~S~~~ 720 (1095)
+|++||++|++||++++++|++|.. ..+..|+|+||||+ |+|+++||++||||.+ +.+++++|++|+++
T Consensus 479 ~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~~~V~Y~~~gfleKNkD~~~~~~~~~ll~~S~~~ 558 (767)
T cd01386 479 VPGSSDDTFLERLFAAYGDRETRETGLSRLRTCEGPLQFVLFHLLGTNPVLYDVTGWLRRAKPNPAALNAPQLLQDSKRE 558 (767)
T ss_pred CCCCcHHHHHHHHHHHhccCCCcccCccccccCCCCCcEEEEEcCCCCceEecCCCHHHhcCCCCChHHHHHHHHhCCcH
Confidence 9999999999999999998888754 12468999999995 9999999999999965 68999999999987
Q ss_pred H-HHHhhcccCC------C-------CCCC---CCC-CC---CCCCCcCccchHHHHHHHHHHHHHHHhccCCeeeEecc
Q 001346 721 V-LQLFASKMLK------P-------SPKP---AAS-SQ---PGALDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIK 779 (1095)
Q Consensus 721 l-~~lf~~~~~~------~-------~~~~---~~~-~~---~~~~~~~~~tv~~~fk~qL~~L~~~L~~t~~hfIrCIk 779 (1095)
+ ..+|...... . +..+ ... ++ .++...++.||+++||.||+.||++|++|+||||||||
T Consensus 559 ~i~~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~tv~~qFk~qL~~Lm~~L~~t~phfIRCIK 638 (767)
T cd01386 559 EINSLFQGRAGLAPVCLGAGAGLEGTSQQALRRSSSIRRTFTSSTAAVKRKSPCVQVKLQVDALIDTLRRSGLHFVHCYL 638 (767)
T ss_pred HHHHHHhcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHhccCCeeEEEeC
Confidence 5 6788543210 0 0000 000 00 00112346799999999999999999999999999999
Q ss_pred CCCCCC----------------------CcccchhHHHHhhhhhchhHHHHHHhhCCCcccchhhHHHhhhcccccccc-
Q 001346 780 PNSKQL----------------------PGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQL- 836 (1095)
Q Consensus 780 PN~~k~----------------------p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~- 836 (1095)
||+.|. |+.||.++|++||||+||||+|||+|.|||+|++|.+|+.||++|.+...+
T Consensus 639 PN~~k~~~~~~~~~~~~~~~~~~~~~~~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~R~~~~~F~~RY~~L~~~~~~~ 718 (767)
T cd01386 639 PQHNGGKAMARTASPSPQQSEDNGVAAEPLALDIPLLRSQLRGSQILEAARLHRLGFPISVPLGEFVRRFGLLAEGLTKK 718 (767)
T ss_pred ccccccccccccccccccccccccccccccccCHHHHHHHHHhcccHHHHHHHhcCCcccccHHHHHHHHHhhChhhccc
Confidence 999874 789999999999999999999999999999999999999999999876432
Q ss_pred ------CCChHHHHHHHHHhcCCCCcceeeceeeeeeccchhHHhhhhh
Q 001346 837 ------SQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRR 879 (1095)
Q Consensus 837 ------~~d~~~~~~~iL~~~~l~~~~yqiGkTKVFLr~g~l~~LE~~R 879 (1095)
..|++..|..||+.+++++++|++|+||||||.+++..||+.|
T Consensus 719 ~~~~~~~~d~r~~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R 767 (767)
T cd01386 719 VGGAGGGADERAAVEEILENLELDKSSYRIGHSQVFFRAGVLSRLEAQR 767 (767)
T ss_pred ccccccCCCHHHHHHHHHHHcCCCcceEEeecceEEecccHHHHHhccC
Confidence 3588999999999999999999999999999999999999876
No 18
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.2e-175 Score=1486.19 Aligned_cols=706 Identities=39% Similarity=0.659 Sum_probs=660.1
Q ss_pred cccCcCCccccccCCchhHHHHHHHHhhcCccccccCCcEEEEcCCCCCCCCChHHHHHHcccCCC--CCchhHHHHHHH
Q 001346 207 ILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAY 284 (1095)
Q Consensus 207 ~~~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~~Y~~~~~~~y~~~~~~--~PHiyavA~~Ay 284 (1095)
...|||||+-|+-++|.+|..||+.||..+.||||+|++||+||||+.+|+|+++.+..|+++... ||||||+|+.+|
T Consensus 16 k~vGVdDm~LLsKiteesI~eNLkkRf~n~~IfTYIG~VLISVNPFk~m~~ft~~~~~~YqG~~q~E~pPHiyAladnmY 95 (1106)
T KOG0162|consen 16 KHVGVDDMVLLSKITEESINENLKKRFMNGYIFTYIGHVLISVNPFKQMPYFTEKEMELYQGAAQYENPPHIYALADNMY 95 (1106)
T ss_pred eeccccceeehhhccHHHHHHHHHHHhhcCceEEEeeeEEEeecchhccccchHHHHHHhhchhhccCCchhhhhHHHHH
Confidence 356899999999999999999999999999999999999999999999999999999999998754 899999999999
Q ss_pred HHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHhcCCC---cchHHHHHhhhHHHHHhcccccCCCCCCCccccEEEE
Q 001346 285 NEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGS---EGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEI 361 (1095)
Q Consensus 285 ~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~~~~---~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l 361 (1095)
++|.-+.+|||||||||||||||+++|.||+|++.++++. ..|.+-||++||+|||||||||+||+||||||||++|
T Consensus 96 ~nM~~~~EnQCVIISGESGAGKT~aAK~IM~YIs~vS~~g~kvq~vkdiiL~sNPLLEaFG~akTvRNnNSSR~GKY~Ei 175 (1106)
T KOG0162|consen 96 RNMKIDNENQCVIISGESGAGKTVAAKRIMQYISRVSGGGEKVQHVKDIILQSNPLLEAFGNAKTVRNNNSSRFGKYLEI 175 (1106)
T ss_pred HHhhhccccceEEEecCCCCCchHHHHHHHHHHHHhccCCcchhhhhhHhhccchHHHHhcchhhhccCCcccccceEEE
Confidence 9999999999999999999999999999999999998754 3577889999999999999999999999999999999
Q ss_pred EEcCCCceeeeEeeeeeccccccccccCCCCcccchhhhhcCCChhhHHhcCCCCCCCCCcccCCCccccCCcchHHHHH
Q 001346 362 HFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFH 441 (1095)
Q Consensus 362 ~f~~~g~i~Ga~i~~yLLEksRVv~~~~gERnfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~ 441 (1095)
+|+..|..+|++|.+|||||+|||.|.+|||||||||||+.||+.+.|..||+..++.|.||+.++|+.++++||..+|+
T Consensus 176 ~Fs~ggeP~ggkisNfLLEKsRVV~q~~neRnFHIfYQ~~kgAs~~~r~t~Gi~~pe~Y~Y~~~sg~~s~D~idd~kdfq 255 (1106)
T KOG0162|consen 176 QFSRGGEPDGGKISNFLLEKSRVVMQNENERNFHIFYQLTKGASQEYRQTFGIQEPEYYVYLNASGCYSVDDIDDRKDFQ 255 (1106)
T ss_pred EecCCCCcCcchhhHHHHhhhhhhhccCCccceeeehhhhcCccHHHHhhhCcCCchheeeeccccceeccccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCceEEEecCCCceeecChHHHHHHHHhcCCCHHHHHHhHhhcEEeeC---
Q 001346 442 NLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAG--- 518 (1095)
Q Consensus 442 ~l~~Al~~lG~~~~e~~~i~~iLaAILhLGni~F~~~~~~~~~~~~~~~~l~~aa~LLgv~~~~L~~~L~~~~~~~~--- 518 (1095)
.++.||+++|+.++||+.||++||+|||||||.|.+. ++.+.+.+.+.++-.|.|||||...|.+.||.|.+...
T Consensus 256 ~Tl~AM~vIGi~~~eQ~~v~rmva~IL~lGNIsF~Ee--~~~a~V~~~~~~~f~ayLlgi~s~~l~~~Lt~R~M~s~~G~ 333 (1106)
T KOG0162|consen 256 ETLHAMKVIGINQEEQDEVLRMVAGILHLGNISFIEE--GNYAAVSDKSVLEFPAYLLGIDSARLEEKLTSRIMESKWGG 333 (1106)
T ss_pred HHHHHheeccCChHHHHHHHHHHHHHHhccceeEEee--CCcceeccchHHHhHHHHhcCCHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999999999999999999973 45577888889999999999999999999999998763
Q ss_pred -CceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccceeEeecccCcccCCCCChhHHHhhhhhHHH
Q 001346 519 -KDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERL 597 (1095)
Q Consensus 519 -~e~i~~~l~~~qA~~~rDalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNEkL 597 (1095)
.+.+..+|+++||...||||||+||.+||||||++||.++...+.+...+||||||||||+|++||||||||||.||||
T Consensus 334 kr~~~~v~LNv~QA~~~RDAlakaiy~~lFD~lV~rvNkam~~~~~~~~~sIGiLDIYGFEIFe~N~FEQ~CINfVNEKL 413 (1106)
T KOG0162|consen 334 KREVIHVPLNVEQASYTRDALAKAIYARLFDWLVERVNKAMQAFKGSEEYSIGILDIYGFEIFENNGFEQFCINFVNEKL 413 (1106)
T ss_pred cceeEEecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeeeeeecccCCHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999965555678999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhHhhhhhcCCceeeecccChHHHHHHHhc-CCCccccccccccCCC----CCChHHHHHHHHHHhCCCC
Q 001346 598 QQHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEK-KPLGVLSLLDEESNFP----KATDLTFANKLKQHLGSNS 672 (1095)
Q Consensus 598 Q~~f~~~~F~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~-~p~Gll~lLDeE~~~p----~~sd~~f~~kl~~~~~~~~ 672 (1095)
||.|++-+++.|||||.+|||.|++|+|.||.-++||||. .|.||+++|||-|... .|-|.+|+.+|+..+++||
T Consensus 414 QQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ldD~~At~Ha~~~~aDqa~~qrLn~~~~s~p 493 (1106)
T KOG0162|consen 414 QQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSALDDVCATAHADSEGADQALLQRLNKLFGSHP 493 (1106)
T ss_pred HHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHHHHHHHHHHHhccccchhHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999985 5899999999999753 4679999999999999999
Q ss_pred ccccCCCCCeEEeccCccccccccchhhhccCcchHHHHHHHhhchHHHH-HHhhcccCCCCCCCCCCCCCCCCCcCccc
Q 001346 673 CFKGERGRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVL-QLFASKMLKPSPKPAASSQPGALDTQKQS 751 (1095)
Q Consensus 673 ~f~~~~~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~t 751 (1095)
+|.. +...|+|+||||+|+||++||.+||||.|..|++.|+++|+++|. .+|......++.+ +-+|
T Consensus 494 hF~~-~s~~FvIkHYAGdVtYdi~G~~drNrD~L~~DlieLm~ts~~~Fl~slFPe~v~~dskr------------RP~T 560 (1106)
T KOG0162|consen 494 HFES-RSNGFVIKHYAGDVTYDIDGFCDRNRDVLFKDLIELMQTSENPFLKSLFPENVDADSKR------------RPPT 560 (1106)
T ss_pred cccc-ccCceEEEEeccceeeecccccccchhHHHHHHHHHHhccchHHHHHhCchhhcccccC------------CCCC
Confidence 9975 367899999999999999999999999999999999999999875 5776544332221 2368
Q ss_pred hHHHHHHHHHHHHHHHhccCCeeeEeccCCCCCCCcccchhHHHHhhhhhchhHHHHHHhhCCCcccchhhHHHhhhccc
Q 001346 752 VGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLL 831 (1095)
Q Consensus 752 v~~~fk~qL~~L~~~L~~t~~hfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~ 831 (1095)
.+.+.+.|-++|+++|..|+||||||||||..|.|+.||...|++|+.|+|+-|.|||+|+||.+|..|+.|++||.+|.
T Consensus 561 ag~kIkkqANdLVeTLmKc~P~YIR~IKPNeTK~pnD~ee~~V~HQveYLGLqENiRvRRAGfAYRr~F~kF~qRyails 640 (1106)
T KOG0162|consen 561 AGDKIKKQANDLVETLMKCQPHYIRCIKPNETKSPNDWEESRVKHQVEYLGLQENIRVRRAGFAYRRAFDKFAQRYAILS 640 (1106)
T ss_pred chhhHHhhHHHHHHHHHhcCcceeEeeCCCCCCCCccHHHHHHHHHHHhcchhhheeehhhhhHHHHHHHHHHHHheecC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccC--CChHHHHHHHHHhcCCCCcceeeceeeeeecc-chhHHhhhhhhhHHHH-HHHHHHHHhhhhhhhhhhhhhh
Q 001346 832 SEKQLS--QDPLSISVAVLQQFNVLPEMYQVGYTKLYLRS-GQLAALEDRRKQVLQA-IIRLQKCFRGYQARSRFRELCN 907 (1095)
Q Consensus 832 ~~~~~~--~d~~~~~~~iL~~~~l~~~~yqiGkTKVFLr~-g~l~~LE~~R~~~l~a-ai~IQa~~Rg~~aRr~y~~lr~ 907 (1095)
|..+++ .|.+.+|+.||+..++++++||+|.|+||++. ..+..||++|++.... |.+||++||.|.+|++|.++|.
T Consensus 641 p~t~~twqGD~~~av~~il~~~~m~~~qyQmG~tkVFiKnPEsLF~LEemRer~~d~~A~~IQkAWRrfv~rrky~k~re 720 (1106)
T KOG0162|consen 641 PQTWPTWQGDEKQAVEHILRDVNMPSDQYQMGVTKVFIKNPESLFLLEEMRERKWDGMARRIQKAWRRFVARRKYEKMRE 720 (1106)
T ss_pred cccccccccchHHHHHHHHHhcCCChhHhhccceeEEecChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999875 57889999999999999999999999999997 4799999999998874 7899999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 001346 908 GVITLQSFARGENTRRRHASLGK 930 (1095)
Q Consensus 908 aai~IQs~~Rg~~aRr~y~~lr~ 930 (1095)
-+..| .-|...||+|--+|.
T Consensus 721 e~t~l---l~gKKeRRr~Si~R~ 740 (1106)
T KOG0162|consen 721 EATKL---LLGKKERRRYSINRN 740 (1106)
T ss_pred HHHHH---hcchHHHHHHHHHHH
Confidence 77754 457888888866654
No 19
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=100.00 E-value=3e-172 Score=1458.12 Aligned_cols=759 Identities=39% Similarity=0.628 Sum_probs=683.3
Q ss_pred CcEEEEEcCCCCEEEEEEEEeeCCeEEEEec--CCeEEEEeCCCcccCCCCcccCcCCccccccCCchhHHHHHHHHhhc
Q 001346 158 KLRVWCRLEDGKWESGMIQSTSGDEAFVLLS--NGNVVKVSTGELLPANPDILEGVDDLIQLSYLNEPSVLNNIQYRYSR 235 (1095)
Q Consensus 158 ~~~vW~~~~~~~~~~~~v~~~~~~~~~v~~~--~g~~~~v~~~~~~~~np~~~~~~~Dl~~L~~LnE~svL~~L~~Ry~~ 235 (1095)
+..||++|+.++|..|.|+....++.+++.- .|.+++---+++.++..+...+|||-|.|-||||+++|+|++.||.+
T Consensus 4 gr~VWi~d~tdGf~~~rI~di~~~~ftl~~~d~k~~t~~~~~edv~a~eeD~~k~veDNC~Lm~LNEATlL~Nik~RY~k 83 (1259)
T KOG0163|consen 4 GRLVWIRDATDGFIAGRITDIGAKGFTLTPLDRKGPTVTRHFEDVHACEEDSPKDVEDNCELMHLNEATLLNNIKLRYYK 83 (1259)
T ss_pred CceEeecccccchhheeeeeecCCceEEeecccCCcceeehhhhccccccccccccccccceeeccHHHHhhhhhhhhcc
Confidence 5689999999999999999999999988653 67888888899999988888899999999999999999999999999
Q ss_pred CccccccCCcEEEEcCCCCCC-CCChHHHHHHcccCCC--CCchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHHHH
Q 001346 236 DMIYSKAGPVLIAVNPFKAVP-IYGNKFITAYRQKVMD--SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKF 312 (1095)
Q Consensus 236 ~~iYT~~G~iLiavNP~k~l~-~Y~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~ 312 (1095)
|.||||+.+||||||||+.++ +|+++.+..|++++.. ||||||||+.|||.|..-+.+||||+||||||||||++|.
T Consensus 84 ~kIYtYVANILIavNPY~~I~~lYs~etIK~Y~GkSLGq~~PHvFAIADKa~RdMr~~k~SQSIIVSGESGAGKTEstK~ 163 (1259)
T KOG0163|consen 84 DKIYTYVANILIAVNPYQEIDGLYSPETIKEYRGKSLGQLPPHVFAIADKAYRDMRVYKLSQSIIVSGESGAGKTESTKA 163 (1259)
T ss_pred CchhhhhhhhheeccchhhcccccCHHHHHHhcCCcccCCCCceeeechHHHHHHHHHhhcccEEEecCCCCCcchhHHH
Confidence 999999999999999999997 9999999999999876 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCcchHHHHHhhhHHHHHhcccccCCCCCCCccccEEEEEEcCCCceeeeEeeeeeccccccccccCCCC
Q 001346 313 AMQYLAALGGGSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGER 392 (1095)
Q Consensus 313 il~yLa~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~~~g~i~Ga~i~~yLLEksRVv~~~~gER 392 (1095)
+|+||+.--|+.+.|+.+||.+||||||||||||+||+||||||||++|||+.+|.++|+-|.+||||||||+.|+.+||
T Consensus 164 vLrYLces~gsag~Iq~rileaNPiLEAFGNAKT~RNNNSSRFGKFveiHf~dk~~VvGGyvSHYLLEkSRiC~Qaa~ER 243 (1259)
T KOG0163|consen 164 VLRYLCESWGSAGPIQTRILEANPILEAFGNAKTLRNNNSSRFGKFVEIHFDDKGQVVGGYVSHYLLEKSRICRQAAEER 243 (1259)
T ss_pred HHHHHHhccCCCCcHHHHHhccChHHHHhccchhhccCChhhccceEEEEEcCCCceechhhhHHHHHHhHHHHhhhccc
Confidence 99999998777789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhhcCCChhhHHhcCCCCCCCCCcccCCCcc---------------------------ccCCcchHHHHHHHHH
Q 001346 393 SYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECL---------------------------TIDGVDDAQNFHNLME 445 (1095)
Q Consensus 393 nfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~---------------------------~~~~~dD~~~f~~l~~ 445 (1095)
||||||||++|+++++++.|.|..+++|+||+.+ |. .-+-+||..+|..+..
T Consensus 244 NYHiFY~LiAGas~dl~~kL~L~~pd~f~YL~rG-~t~yFan~~t~~ki~~nr~S~~~~~~~~~kD~iidD~~dF~rl~~ 322 (1259)
T KOG0163|consen 244 NYHIFYQLIAGASPDLRKKLSLGKPDDFRYLKRG-CTQYFANAKTEQKIPGNRKSKNHQQKGSLKDPIIDDYQDFHRLEK 322 (1259)
T ss_pred chhHHHHHHcCCCHHHHHHhccCCchhhhHHhcc-hhhhccCcchhhcCcccccCccccccCcccCcccccHHHHHHHHH
Confidence 9999999999999999999999999999999854 31 1123689999999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHHhcCceEEEecC--CCceeec--ChHHHHHHHHhcCCCHHHHHHhHhhcEEee----
Q 001346 446 ALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDN--ENHVEVI--ADEAVTTAAMLMGCSSDELMLALSTHKIQA---- 517 (1095)
Q Consensus 446 Al~~lG~~~~e~~~i~~iLaAILhLGni~F~~~~~--~~~~~~~--~~~~l~~aa~LLgv~~~~L~~~L~~~~~~~---- 517 (1095)
||+.+|++++|...||+++|||||||||+|++..+ .+.|.+. +..+|..+|+|||+|.++|...|+.|.+.+
T Consensus 323 Al~~~Glsd~Ekl~i~s~vA~vLHLGNieFEE~~ddsrGGC~v~n~seqsL~~~a~LLGld~~elr~~L~aRvMqtt~GG 402 (1259)
T KOG0163|consen 323 ALKLLGLSDTEKLFIWSTVAAVLHLGNIEFEEIPDDSRGGCQVSNGSEQSLTIAAELLGLDQTELRTGLCARVMQTTKGG 402 (1259)
T ss_pred HHHhcCCChHHHHHHHHHHHHHHHccccchhcccCcCCCceecccCchhhHHHHHHHhCCCHHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999997543 3446554 567899999999999999999999998865
Q ss_pred -CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccceeEeecccCcccCCCCChhHHHhhhhhHH
Q 001346 518 -GKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANER 596 (1095)
Q Consensus 518 -~~e~i~~~l~~~qA~~~rDalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNEk 596 (1095)
.|..|.+||.+.+|..+||||||++|++||||||.+||+++-.. .+..+||||||.|||-|..||||||||||+||+
T Consensus 403 ~kGTvIrVPLK~~eA~n~RDALaKaiYSkLFD~lV~~iNqsiPFe--~St~fiGVLDiAGFEyf~~NSFEQFCINyCNEK 480 (1259)
T KOG0163|consen 403 FKGTVIRVPLKIHEASNARDALAKAIYSKLFDWLVGRINQSIPFE--KSTFFIGVLDIAGFEYFAVNSFEQFCINYCNEK 480 (1259)
T ss_pred ccceEEEeeccHHhhcchHHHHHHHHHHHHHHHHHHHhhcccccc--cccceeEEEeeccceeeecccHHHHHHHHHHHH
Confidence 24678899999999999999999999999999999999999753 356799999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhHhhhhhcCCceeeecccChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCcccc
Q 001346 597 LQQHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKG 676 (1095)
Q Consensus 597 LQ~~f~~~~F~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~~p~Gll~lLDeE~~~p~~sd~~f~~kl~~~~~~~~~f~~ 676 (1095)
||+|||+.|++.||+.|..||+....|+|.||++||+|||.|..|||.|||||..+|+.++..|..+.++.+.+|-....
T Consensus 481 LQ~FFNerILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~K~~GifdlLDEEaklP~~s~qhFT~~vHe~~k~HfRL~~ 560 (1259)
T KOG0163|consen 481 LQKFFNERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEAKSNGIFDLLDEEAKLPKPSYQHFTARVHESNKNHFRLDL 560 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHHhccchhhhhhhhccCCCcchHHHHHHHHHhhhcceeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988877654432
Q ss_pred CC------------CCCeEEeccCccccccccchhhhccCcchHHHHHHHhhchHHH-HHHhhcccCCCCCCCCCCCCCC
Q 001346 677 ER------------GRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQV-LQLFASKMLKPSPKPAASSQPG 743 (1095)
Q Consensus 677 ~~------------~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l-~~lf~~~~~~~~~~~~~~~~~~ 743 (1095)
|| ...|.|+||||.|.|++.-|+|||.|.|+..+-.|+..|++++ +.||.+...+. .++. +
T Consensus 561 PRkSklksHR~lRDdEG~liRHfAGaVCYeT~~FvEKNnD~LH~SLe~Li~es~~~ll~sLF~S~s~t~-a~~~-----~ 634 (1259)
T KOG0163|consen 561 PRKSKLKSHRELRDDEGFLIRHFAGAVCYETEQFVEKNNDALHNSLEGLIEESDNPLLVSLFPSGSSTS-AKQT-----R 634 (1259)
T ss_pred CchhhhhhhhhhccccceeeeecccceeechHHHHHhccHHHHHHHHHHHHhccchHHHHHccCCCCCc-cccc-----c
Confidence 21 3579999999999999999999999999999999999999885 67897643221 1111 1
Q ss_pred CCCcCccchHHHHHHHHHHHHHHHhccCCeeeEeccCCCCCCCcccchhHHHHhhhhhchhHHHHHHhhCCCcccchhhH
Q 001346 744 ALDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEF 823 (1095)
Q Consensus 744 ~~~~~~~tv~~~fk~qL~~L~~~L~~t~~hfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF 823 (1095)
...+..||+++|+.||..||+.|++|..|||||||||....+..||...++.||.|+|++-++++.+.|||.|..|.+.
T Consensus 635 -gkL~~iSVGaKFKtQL~~LldKL~stGt~FiRCiKPN~kM~~~~FeGs~iLsQLqCsGm~SVL~LMq~GyPSR~~F~dL 713 (1259)
T KOG0163|consen 635 -GKLKFISVGAKFKTQLSELLDKLESTGTHFIRCIKPNSKMIDRHFEGSAILSQLQCSGMISVLELMQHGYPSRTSFADL 713 (1259)
T ss_pred -ceeeEEehhHHHHHHHHHHHHHHHhcCCeeEEeecCccccccccccHHHHHHHhhhccHHHHHHHHhcCCCccccHHHH
Confidence 1345679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccccccccCCChHHHHHHHHHhcCCCCcceeeceeeeeeccchhHHhhhhhhhHHHHHHHHHHHHhhhhhhhhhh
Q 001346 824 AGRYGVLLSEKQLSQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRKQVLQAIIRLQKCFRGYQARSRFR 903 (1095)
Q Consensus 824 ~~RY~~L~~~~~~~~d~~~~~~~iL~~~~l~~~~yqiGkTKVFLr~g~l~~LE~~R~~~l~aai~IQa~~Rg~~aRr~y~ 903 (1095)
+.-|.-.+|+.....||+-.|.++.+.++++..+|++|.|||||+.|..+..++..+.--...+.|-+.+--|+.|.+++
T Consensus 714 YamYkk~lPpkLarLdpRlFck~lF~aLgL~q~DfkFGlTKVFFr~GKFaEFDqiMksDPe~m~~lv~kVn~WLv~sRWk 793 (1259)
T KOG0163|consen 714 YAMYKKVLPPKLARLDPRLFCKALFQALGLDQNDFKFGLTKVFFRPGKFAEFDQIMKSDPETMLELVAKVNKWLVRSRWK 793 (1259)
T ss_pred HHHHHhhCCHhhhcCChHHHHHHHHHHhCCCcccccccceeEeecCcchHHHHHHHhcCHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999888776654444444444455566666665
Q ss_pred hhhh-----------------HHHHHHHHHHHHHHHHHHH
Q 001346 904 ELCN-----------------GVITLQSFARGENTRRRHA 926 (1095)
Q Consensus 904 ~lr~-----------------aai~IQs~~Rg~~aRr~y~ 926 (1095)
+... +++++|+++|||++|+++.
T Consensus 794 k~q~~a~sVIKLkNkI~yRae~v~k~Q~~~Rg~L~rkr~~ 833 (1259)
T KOG0163|consen 794 KSQYGALSVIKLKNKIIYRAECVLKAQRIARGYLARKRHR 833 (1259)
T ss_pred HhhhhhhheeehhhHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 5433 3455566666666555553
No 20
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=100.00 E-value=5.4e-171 Score=1580.16 Aligned_cols=658 Identities=50% Similarity=0.832 Sum_probs=579.7
Q ss_pred cCCccccccCCchhHHHHHHHHhhcCccccccCCcEEEEcCCCCCCCCChHHHHHHcccCC--CCCchhHHHHHHHHHHh
Q 001346 211 VDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVM--DSPHVYAIADTAYNEMM 288 (1095)
Q Consensus 211 ~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~~Y~~~~~~~y~~~~~--~~PHiyavA~~Ay~~m~ 288 (1095)
||||+.|++|||++||++|+.||.++.||||+|++||+||||+++|+|+++++..|+++.. .|||||++|++||+.|+
T Consensus 1 veDl~~l~~l~e~~il~~L~~R~~~~~iyT~~G~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHif~~a~~A~~~m~ 80 (689)
T PF00063_consen 1 VEDLASLSHLNEASILHNLRQRYKKDLIYTYIGPILIAVNPYKPLPLYSDEVMEKYRGKRRQDLPPHIFAVAQRAYRQML 80 (689)
T ss_dssp -SBGGGSSS-SHHHHHHHHHHHHHTT--EEEETTEEEEE--SS--STSSHHHHHHHTTS-GGGS-SSHHHHHHHHHHHHH
T ss_pred CChhhhCCCCCHHHHHHHHHHHHccCCccccCCCeEEEECCchhhhhhhhhhhhhhhhhccccccCccchhhhccccccc
Confidence 7999999999999999999999999999999999999999999999999999999998754 38999999999999999
Q ss_pred hCCCceEEEEcCCCCCChhhHHHHHHHHHHHhcCCCc-----chHHHHHhhhHHHHHhcccccCCCCCCCccccEEEEEE
Q 001346 289 GDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGSE-----GIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHF 363 (1095)
Q Consensus 289 ~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~~~~~-----~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f 363 (1095)
++++||||||||||||||||++|++|+||+.++.+.. .++++|+++||||||||||||++|+||||||||++|+|
T Consensus 81 ~~~~~Q~IiisGeSGsGKTe~~k~il~~L~~~~~~~~~~~~~~i~~~i~~~~~iLeaFGnAkT~~N~nSSRfgk~~~l~f 160 (689)
T PF00063_consen 81 RTRQNQSIIISGESGSGKTETSKLILRYLASLSSSSSSSKSSSIEKKILAANPILEAFGNAKTPRNDNSSRFGKFIELQF 160 (689)
T ss_dssp HHTSEEEEEEEESTTSSHHHHHHHHHHHHHHHSSSSSSTCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEEE
T ss_pred ccccccceeeccccccccccchHHHHHHHhhhcccccccccccccceEEeccchhhhhcccccccCCcccccceEEEEEe
Confidence 9999999999999999999999999999999987653 79999999999999999999999999999999999999
Q ss_pred cCCCceeeeEeeeeeccccccccccCCCCcccchhhhhcCCChhhHHhcCCCCCCCCCcccCCCccccCCcchHHHHHHH
Q 001346 364 SAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNL 443 (1095)
Q Consensus 364 ~~~g~i~Ga~i~~yLLEksRVv~~~~gERnfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~l 443 (1095)
+.+|.++||+|.+||||||||+.+++||||||||||||+|+++++|++|+|.++.+|+||+++++..+++.||+.+|..+
T Consensus 161 ~~~~~~~g~~i~~ylLEksRv~~~~~~ErnfhiFYqll~G~~~~~~~~l~L~~~~~~~yL~~~~~~~~~~~~d~~~f~~l 240 (689)
T PF00063_consen 161 DDSGQIVGAKIETYLLEKSRVVRQPPGERNFHIFYQLLAGADDEERKELRLNDASDYRYLNQSGCSTIPGIDDAEEFQEL 240 (689)
T ss_dssp ETTSSEEEEEEEEEEE-GGGGT---TTS-SBHHHHHHHHTSSHHHHHHTT-S-GGGSTTCCTTSSSSBTTCTHHHHHHHH
T ss_pred cccccccccceecccccccceeeccccccccchhhhhhhccchhhhhcccccccccccceecccccccCCccCHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHHhcCceEEEecCCCceeecChHHHHHHHHhcCCCHHHHHHhHhhcEEeeCCceEE
Q 001346 444 MEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKDSIA 523 (1095)
Q Consensus 444 ~~Al~~lG~~~~e~~~i~~iLaAILhLGni~F~~~~~~~~~~~~~~~~l~~aa~LLgv~~~~L~~~L~~~~~~~~~e~i~ 523 (1095)
+.||++|||+++++..||+|||||||||||+|...++++.+.+.+.+.++.||.||||++++|.++|+++++.++++.++
T Consensus 241 ~~al~~lg~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~~~ 320 (689)
T PF00063_consen 241 KDALKTLGFSDEEIDDIFRILAAILHLGNIEFVEDESDESAEVENSEELQKAAELLGVDSEELEKALTTRTIKVGGETVT 320 (689)
T ss_dssp HHHHHHTT--HHHHHHHHHHHHHHHHHTTSSEEEETTSSSEEESTSHHHHHHHHHTTS-HHHHHHHHHSEEEESTTSEEE
T ss_pred hhhhccccCchhHHHHHHHHHHHHhhhccccccccccccceeechHHHHHHhhhhcCCCHHHHHHHHhhccccccccccc
Confidence 99999999999999999999999999999999988867778889999999999999999999999999999999999999
Q ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccceeEeecccCcccCCCCChhHHHhhhhhHHHHHHHHH
Q 001346 524 KKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNR 603 (1095)
Q Consensus 524 ~~l~~~qA~~~rDalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNEkLQ~~f~~ 603 (1095)
++++++||.++||+|||+||++||+|||.+||.+|++.......+||||||||||+|..||||||||||||||||++|++
T Consensus 321 ~~~~~~~a~~~rdalak~LY~~LF~wIV~~iN~~L~~~~~~~~~~IgILDi~GFE~~~~N~fEQLciNyanErLq~~f~~ 400 (689)
T PF00063_consen 321 KPLSVEQASDARDALAKALYSRLFDWIVERINSALSPSESENSSSIGILDIFGFENFSVNSFEQLCINYANERLQQFFNQ 400 (689)
T ss_dssp EE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS-S-SEEEEEEEEE-B---SSB-HHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhhhhhhHHHHHHHHhhhhccccccccccccCcccCccccccccccccccceeeeccccccceeee
Confidence 99999999999999999999999999999999999987645678999999999999999999999999999999999999
Q ss_pred hhhhhhHhhhhhcCCceeeecc-cChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHh-CCCCccccC----
Q 001346 604 HLFKLEQEEYELDGVDWTRVEF-EDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHL-GSNSCFKGE---- 677 (1095)
Q Consensus 604 ~~F~~eq~eY~~EgI~~~~i~f-~dN~~~ldLie~~p~Gll~lLDeE~~~p~~sd~~f~~kl~~~~-~~~~~f~~~---- 677 (1095)
++|+.||++|.+|||+|..++| .||++|||||+++|.|||++|||||.+|+++|++|+++|.+.+ ++|+.|.++
T Consensus 401 ~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~lLdee~~~~~~sd~~fl~kl~~~~~~~~~~~~~~~~~~ 480 (689)
T PF00063_consen 401 HIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSLLDEECLLPRGSDESFLEKLLKRHSGKHPSFVKPRFSR 480 (689)
T ss_dssp HHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHHHHHHCTSTTS-HHHHHHHHHHHHTTTSTTEECTSSST
T ss_pred ecccccccccccccccccccccccCchhhhhhhccccCCHHHHhhhhhhcccchhhHHHHHHHhhcccCCCccccccccc
Confidence 9999999999999999999999 9999999999999999999999999999999999999999999 888888654
Q ss_pred --CCCCeEEeccCccccccccchhhhccCcchHHHHHHHhhchHHH-HHHhhcccCCCC----------CCCCCCCCCCC
Q 001346 678 --RGRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQV-LQLFASKMLKPS----------PKPAASSQPGA 744 (1095)
Q Consensus 678 --~~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l-~~lf~~~~~~~~----------~~~~~~~~~~~ 744 (1095)
.+..|+|+||||+|+|+++||++||+|.++++++++|++|++.+ ..+|+....... .....+....+
T Consensus 481 ~~~~~~F~I~HyaG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~n~~v~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (689)
T PF00063_consen 481 STSKSSFTIKHYAGDVTYDVEGFLEKNRDPLSQDFVSLLRSSTNSFVSSLFSSEATATSSSSSSLSRRSSSSSTQSRSSG 560 (689)
T ss_dssp SSTTSCEEEEETTEEEEEE-TTHHHHHHE-S-HHHHHHHHTSSSHHHHHHTHSHHH---S-S-S-BTTTTCCCTTSSCCC
T ss_pred ccCCCceEeecccCcceeccccccccccchHHHHHHHHHHhCcCcccccccccccccccccccccccccccccccccccc
Confidence 36899999999999999999999999999999999999999886 578865542000 00000011122
Q ss_pred CCcCccchHHHHHHHHHHHHHHHhccCCeeeEeccCCCCCCCcccchhHHHHhhhhhchhHHHHHHhhCCCcccchhhHH
Q 001346 745 LDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFA 824 (1095)
Q Consensus 745 ~~~~~~tv~~~fk~qL~~L~~~L~~t~~hfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~ 824 (1095)
...+..||+++|+.||+.||+.|++|+||||||||||+.+.|+.||..+|++||||+||+|+++|++.|||+|++|.+|+
T Consensus 561 ~~~~~~tv~~qf~~sL~~L~~~L~~t~~hfIrCIkPN~~~~~~~FD~~~V~~QLr~~gile~vri~~~Gyp~r~~~~eF~ 640 (689)
T PF00063_consen 561 SKKKKSTVSSQFRSSLDELMDTLRSTQPHFIRCIKPNDQKKPNQFDSKLVLRQLRYSGILETVRIRRQGYPVRLTFDEFL 640 (689)
T ss_dssp GGTCSSBHHHHHHHHHHHHHHHHCTSEEEEEEEE-SSSS--TT---HHHHHHHHHHTTHHHHHHHHHCSSSEEEEHHHHH
T ss_pred cccccccccccccccHHHHHhhhhhcccceEEEeccccccccccccchheehhhhhhhhhhhhhhhhcccceecchhhhh
Confidence 24456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhcccccccc-----CCChHHHHHHHHHhcCCCCcceeeceeeeeec
Q 001346 825 GRYGVLLSEKQL-----SQDPLSISVAVLQQFNVLPEMYQVGYTKLYLR 868 (1095)
Q Consensus 825 ~RY~~L~~~~~~-----~~d~~~~~~~iL~~~~l~~~~yqiGkTKVFLr 868 (1095)
+||++|++.... ..++++.|+.||+.++++...|++|+||||||
T Consensus 641 ~RY~~L~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFLk 689 (689)
T PF00063_consen 641 RRYKCLLPSSSSSSDSSKEDDKEACEALLEQLDLESSDYQIGKTKVFLK 689 (689)
T ss_dssp HHHGGGSTTCSHSS--HCSSHHHHHHHHHHHTTSEGTCEEEESSEEEEC
T ss_pred hhhceechhhcccccccCCCHHHHHHHHHHhCCCCccCEEECCcEEEEC
Confidence 999999998764 36899999999999999999999999999996
No 21
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=100.00 E-value=2.3e-170 Score=1527.08 Aligned_cols=741 Identities=52% Similarity=0.847 Sum_probs=694.3
Q ss_pred CCCCcccCcCCccccccCCchhHHHHHHHHhhcCccccccCCcEEEEcCCCCCC-CCChHHHHHHcc-cCCCCCchhHHH
Q 001346 203 ANPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVP-IYGNKFITAYRQ-KVMDSPHVYAIA 280 (1095)
Q Consensus 203 ~np~~~~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~-~Y~~~~~~~y~~-~~~~~PHiyavA 280 (1095)
.||+. .++|||+.|+|||||+||+||+.||..+.||||.|.+|||||||+++| +|+++.+..|+. .....||+|++|
T Consensus 3 ~~~~~-~~~dDlt~lsyl~epaVL~~L~~Ry~~~~IYty~G~vLiAiNPf~~~~~ly~~~~i~~y~~~~~~l~ph~favA 81 (862)
T KOG0160|consen 3 PNPPP-MGVDDLTTLSYLHEPAVLHNLAKRYEQNQIYTYKGIVLIAINPFKRLPHLYGKKMISAYQAIQGELSPHLFAVA 81 (862)
T ss_pred CCCCC-CCccccccCCccCcHHHHHHHHHhhhhcccchhhceeeeeeccccccchhccHHHHHhhcccccccCcchhhHH
Confidence 45666 799999999999999999999999999999999999999999999999 999999999992 223369999999
Q ss_pred HHHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHhcCC--CcchHHHHHhhhHHHHHhcccccCCCCCCCccccE
Q 001346 281 DTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGG--SEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKL 358 (1095)
Q Consensus 281 ~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~~~--~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~ 358 (1095)
+.||+.|..+..||+||||||||||||+++|++|+||+.++++ ...||++|+.+|||+||||||||++||||||||||
T Consensus 82 ~~ay~~m~~~~~~QsIivsGESGAgkT~~aK~~m~yla~v~~~~~~~~vE~~vL~snpi~EafgNakT~rndnsSrFgK~ 161 (862)
T KOG0160|consen 82 EEAYRDMTPDGVNQSIIVSGESGAGKTETAKYLMEYLASVGGSVEGRSIENKVLASNPILEAFGNAKTTRNDNSSRFGKV 161 (862)
T ss_pred HHHHHHhhhccCCceeeeeCCCCCchhHHHHHHHHHHHHHhccchhhHHHHHHHhcCCcchhhccchhhhcccHHHhhhH
Confidence 9999999999999999999999999999999999999999998 66899999999999999999999999999999999
Q ss_pred EEEEEcCCCceeeeEeeeeeccccccccccCCCCcccchhhhhcCCChhhHHhcCCCCCCCCCcccCCCccccCCcchHH
Q 001346 359 IEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQ 438 (1095)
Q Consensus 359 i~l~f~~~g~i~Ga~i~~yLLEksRVv~~~~gERnfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~ 438 (1095)
++|+||..|+|.||+|.|||||||||+.++++|||||||||+|+|.+ +++++|+|..+..|.|++|++|..+++++|+.
T Consensus 162 iei~Fd~~~~I~GA~~~TYLLekSRv~~~~~~ernyhiFyQlca~~~-~~~~~l~L~~~~~f~yl~q~~~~~i~~v~d~~ 240 (862)
T KOG0160|consen 162 IEITFDQQGRISGAKIRTYLLEKSRVVQLSAPERNYHIFYQLCAGAP-EELEKLKLGTLRRFSYLNQSACVLISGVSDAE 240 (862)
T ss_pred HHHhhhhhcccccceeeeEEeecceeeecCccccchHHHHHHhcCCc-hhhhccCcCccccceecccccchhhcccccHH
Confidence 99999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCceEEEecCCCceeecChHHHHHHHHhcCCCHHHHHHhHhhcEEeeC
Q 001346 439 NFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAG 518 (1095)
Q Consensus 439 ~f~~l~~Al~~lG~~~~e~~~i~~iLaAILhLGni~F~~~~~~~~~~~~~~~~l~~aa~LLgv~~~~L~~~L~~~~~~~~ 518 (1095)
+|..++.||..+||+.++|+.||++|||||||||++|...++++.+...++ .+..+|.||||+.+.|...|+.|.+.++
T Consensus 241 e~~~t~~A~~~vgi~~~~q~~if~lla~ilhlGni~f~~~~~~~~~~~~~~-~~~~~a~Llg~~~~~l~~~L~~r~i~~~ 319 (862)
T KOG0160|consen 241 EFLSTTEAMLFVGISESHQELIFRLLAAILHLGNIQFSSGVEETSSSPVDD-HLWTAAELLGCDEEALEQWLSKRKILTA 319 (862)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHhccCceEeecccccccccccch-HHHHHHHHhCCCHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999997665544444444 8999999999999999999999999999
Q ss_pred CceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccceeEeecccCcccCCCCChhHHHhhhhhHHHH
Q 001346 519 KDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQ 598 (1095)
Q Consensus 519 ~e~i~~~l~~~qA~~~rDalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNEkLQ 598 (1095)
++.+.++++..||...||++||.||++||+|+|..||.+|..+......+||||||||||.|..|||||||||||||+||
T Consensus 320 ~e~i~k~l~~~qa~~~rD~lak~iys~LFdwlV~~in~sL~~~~~~~~~~igVLDiYgFEsF~~nsfeQfcINyanEkLq 399 (862)
T KOG0160|consen 320 RESIVKPLTLSQAVKRRDALAKQLYSLLFDWLVAKINGSLGANDPKAERFIGVLDIYGFESFEVNSFEQFCINYANEKLQ 399 (862)
T ss_pred cceeecccCHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccCCCCccceeeeehcccccccccCcHHHhhhhhHHHHhh
Confidence 99999999999999999999999999999999999999999877667789999999999999999999999999999999
Q ss_pred HHHHHhhhhhhHhhhhhcCCceeeecccChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCccccCC
Q 001346 599 QHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGER 678 (1095)
Q Consensus 599 ~~f~~~~F~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~~p~Gll~lLDeE~~~p~~sd~~f~~kl~~~~~~~~~f~~~~ 678 (1095)
|+||+|+|+.||++|..|||+|..|+|.||++|+++|++ |.|+++||||||.+|.++|++|..||.+.+.+|++|.+++
T Consensus 400 q~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~Llde~c~lp~~t~~~~a~KL~~~~~~~~~f~kpr 478 (862)
T KOG0160|consen 400 QQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILALLDEECMLPKGTDETLAQKLYQTLKRNKRFTKPR 478 (862)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhccchhccCCCCCcchHHHHHHHHhccCCccCCCC
Confidence 999999999999999999999999999999999999998 8999999999999999999999999999999999999886
Q ss_pred C--CCeEEeccCccccccccchhhhccCcchHHHHHHHhhchHHHHHHhhcccCCCCCCCCCCCCCCCCCcCccchHHHH
Q 001346 679 G--RAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVLQLFASKMLKPSPKPAASSQPGALDTQKQSVGTKF 756 (1095)
Q Consensus 679 ~--~~F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l~~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f 756 (1095)
. ..|+|.||||+|+|++.|||+||||+++++.++++..|++.+...+......++. +.+++.||+++|
T Consensus 479 ~~~~~f~v~hyAg~v~y~~~~fL~knrd~v~~el~~ll~~s~~~~~~~~~~~~~~~~~----------~~~~~~tv~s~f 548 (862)
T KOG0160|consen 479 LSRTDFRVAHYAGDVTYDTEGFLEKNRDYVSDELIDLLLASDCHFVAGLAPPLRADSS----------AKSKRSTVGSQF 548 (862)
T ss_pred CCcCCcccccccCccccchhhhccCCccccCHHHHhhhhhcccchHHHhccchhcchh----------hhhhcccHHHHH
Confidence 4 5899999999999999999999999999999999999999876655442221111 255778999999
Q ss_pred HHHHHHHHHHHhccCCeeeEeccCCCCCCCcccchhHHHHhhhhhchhHHHHHHhhCCCcccchhhHHHhhhcccccccc
Q 001346 757 KGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQL 836 (1095)
Q Consensus 757 k~qL~~L~~~L~~t~~hfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~ 836 (1095)
+.+|..||.+|++|+||||||||||..+.|..|+..+|++||||+||||+|||++.|||.|++|.||+.||++|+| ...
T Consensus 549 k~~l~~Lm~~l~~t~phyircikPn~~~~p~~fe~~~v~~Qlr~~GvLetiRiS~~g~P~r~~~~Ef~~r~~~L~~-~~~ 627 (862)
T KOG0160|consen 549 KLQLISLMETLNSTPPHYIRCIKPNAEKKPQIFENNLVLQQLRCCGVLETIRISCAGFPTRWTFIEFVNRYGILMP-NDS 627 (862)
T ss_pred HHHHHHHHHHhcCCCCCCceeeCcchhcccccccccceeeeccccceehhheeccccCCccccHHHHHHHHhhcCc-chh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 555
Q ss_pred CCChHHHHHHHHHhcCCCCcceeeceeeeeeccchhHHhhhhhhhHHHH-HHHHHHHHhhhhhhhhhhhhhhHHHHHHHH
Q 001346 837 SQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRKQVLQA-IIRLQKCFRGYQARSRFRELCNGVITLQSF 915 (1095)
Q Consensus 837 ~~d~~~~~~~iL~~~~l~~~~yqiGkTKVFLr~g~l~~LE~~R~~~l~a-ai~IQa~~Rg~~aRr~y~~lr~aai~IQs~ 915 (1095)
..|++..|..||+.++++ .||+|+||||++.|.++.|+.+|...+.+ ++.||+.+|+|+.|++|..++++++.||+.
T Consensus 628 ~~~~~~~~~~il~~~~~~--~yq~g~tkif~r~gq~~~le~~R~~vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~ 705 (862)
T KOG0160|consen 628 ASDDLSLCKVILEKLGLE--LYQIGKTKIFLRAGQIAVLEARRSDVLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAY 705 (862)
T ss_pred cccchHHHHHHHHHhchh--ceeeeeeeeeeccchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 677799999999999887 99999999999999999999999988875 567999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhccchhhH---------HhhhHHHHHHHHHHHHHHHHHH
Q 001346 916 ARGENTRRRHASLGKSCSAVVPEIR---------DEQLREIICLQSAIRGWLVRKQ 962 (1095)
Q Consensus 916 ~Rg~~aRr~y~~lr~~AA~~IQ~~~---------~~~~~Aai~IQs~~Rg~laRr~ 962 (1095)
+||+.+|+ ..++..||+.||..| ...+.+++.||+.+|++++|++
T Consensus 706 ~rG~~~r~--~~~~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~qs~~r~~~~r~e 759 (862)
T KOG0160|consen 706 SRGVLARR--ETEREAAAIGIQKECRSYLNRRRYRALIPASITIQSGVRAMLARNE 759 (862)
T ss_pred hhHHHHHH--hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999 333444888898888 3455788899999999998873
No 22
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=100.00 E-value=3.5e-113 Score=1055.18 Aligned_cols=747 Identities=37% Similarity=0.534 Sum_probs=630.8
Q ss_pred CCCCcccCcCCccccccCCchhHHHHHHHHhhcCccccccCCcEEEEcCCCCCC-CCChHHHHHHcccCCC--CCchhHH
Q 001346 203 ANPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVP-IYGNKFITAYRQKVMD--SPHVYAI 279 (1095)
Q Consensus 203 ~np~~~~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~-~Y~~~~~~~y~~~~~~--~PHiyav 279 (1095)
..+....+++||++|.+++|+.+++||..||..+.||||+|.+|++||||+.++ +|.++++..|.++... |||||++
T Consensus 55 ~~~~~~~~~~Dl~~l~~l~e~~~~~nl~~R~~~~~Iy~y~gsil~~lnp~~~~~fiy~~~~~~ly~~~~~ge~~phifa~ 134 (1062)
T KOG4229|consen 55 LHRPQVEDVEDLAQLEDLSEATILENLLVRYKRNPIYEYLGSILVALNPLQPIPFLYLPRFSKLYSGKPLGEDPPHIFAI 134 (1062)
T ss_pred ccccccccHHHHhhccccchhhhhHHHHHHHccCCceeeechhhhhcCccccccccccHHhhccccccccCCCCcchhhh
Confidence 355567899999999999999999999999999999999999999999999999 9999999999966544 7999999
Q ss_pred HHHHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHhc-CCCcchHHHHHhhhHHHHHhcccccCCCCCCCccccE
Q 001346 280 ADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALG-GGSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKL 358 (1095)
Q Consensus 280 A~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~-~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~ 358 (1095)
|+.||+.|++...||||+|||||||||||+|+++++||+.++ +..+.++..|+.++|+|||||||+|.+||||||||||
T Consensus 135 ad~~y~~m~~~~~~QcivisGesgsGktest~l~~~~Ls~Lsq~~~~~~e~~il~a~~llEafgnA~t~~ndnssrfgk~ 214 (1062)
T KOG4229|consen 135 ADLAYQDMLREKEDQCIVISGESGSGKTESTKLLWQFLSILSQGNNSPVEQLILSANPLLEAFGNAKTPRNDNSSRFGKY 214 (1062)
T ss_pred hhhHHHhhhhhccceeEEEecccCCCCchhhHHHHHHHHHHhcCCCCchhhhhhcchHHHHHhcccCCcccCchhhhhhe
Confidence 999999999999999999999999999999999999999999 7777899999999999999999999999999999999
Q ss_pred EEEEEcCCCceeeeEeeeeeccccccccccCCCCcccchhhhhcCCChhhHHhcCCCCCCCCCcccCCCcccc-CCcchH
Q 001346 359 IEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTI-DGVDDA 437 (1095)
Q Consensus 359 i~l~f~~~g~i~Ga~i~~yLLEksRVv~~~~gERnfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~-~~~dD~ 437 (1095)
|++.|..+|.|.||+|..|||||+||+.|+.+||||||||++++|++.+++..+.|..+.+|.||+++.+..+ ++.++.
T Consensus 215 i~~~~~~~g~i~Gaki~~yllEKsr~~~q~~~e~nyhify~~~agl~~~e~~~~~l~~~e~y~yL~~~~~~~~~d~~~~~ 294 (1062)
T KOG4229|consen 215 IKVNFRKTGIIEGAKIVEYLLEKSRLVIQAGGERNYHIFYYLLAGLSENELKAFVLGEAENYEYLEQGALFTISDGEDDV 294 (1062)
T ss_pred EEeccccCCCCCcchHHHHHHHHHHHHHhcCCCcccccchhheeccchhhhhHHhhcCCCCHHHhhccccccccchHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCceEEEecC--CCceeecChHHHHHHHHhcCCCHHHHHHhHhhcEE
Q 001346 438 QNFHNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDN--ENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKI 515 (1095)
Q Consensus 438 ~~f~~l~~Al~~lG~~~~e~~~i~~iLaAILhLGni~F~~~~~--~~~~~~~~~~~l~~aa~LLgv~~~~L~~~L~~~~~ 515 (1095)
.+|..+..||..+||+..++..||+++|||||+|||+|..... .+...+.+.+.++.+|.||+++.+.|..++|.++.
T Consensus 295 ~~~~~l~~~m~v~~f~~~~~~si~~~la~il~~gni~~~~~~~~~~d~~~v~~~~~v~~vA~lL~~~~~~l~~alt~~~~ 374 (1062)
T KOG4229|consen 295 AQFIRLEAAMSVVGFTDKVLGSIFKSLAAILHIGNISYIKFALDQQDSAEVENEEAVERVACLLLIKEKLLQEALTARVN 374 (1062)
T ss_pred HhHHHHHHHHHHhccchhHHHHHHHhcccceeecceeHHhhhcccccchhcccchHHHHHHHHhhcCHHHhhhhhcccce
Confidence 9999999999999999999999999999999999999975432 34467888999999999999999999999999999
Q ss_pred eeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCC-ccceeEeecccCcccCCCCChhHHHhhhhh
Q 001346 516 QAGKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQC-TGRSINILDIYGFESFKKNSFEQFCINYAN 594 (1095)
Q Consensus 516 ~~~~e~i~~~l~~~qA~~~rDalak~LY~~LF~wlV~~IN~~L~~~~~~-~~~~IgILDi~GFE~f~~NsfEQLcINyaN 594 (1095)
...++.+..+++.++|.++||++||.||++||.|||.+||..+.+.... ...+||||||||||+|..||||||||||||
T Consensus 375 ~~~ge~~~~~l~~~~A~d~rda~ak~ly~~lf~~iv~rIn~~~~~~~~~~~~~~IgiLdiFgfE~f~~nsfEq~~in~An 454 (1062)
T KOG4229|consen 375 VTRGELLLAPLLVERAVDVRDAMAKTLYGRLFDWIVLRINAALSPESDISDILSIGILDIFGFENFERNSFEQLCINLAN 454 (1062)
T ss_pred eeehhhhhhhhhHHHhccCchHHHHHHHHHHHHHHHhhHHhccCccccccccceeehhhhhcccchhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999864321 358999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhHhhhhhcCCceeeecccChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCcc
Q 001346 595 ERLQQHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCF 674 (1095)
Q Consensus 595 EkLQ~~f~~~~F~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~~p~Gll~lLDeE~~~p~~sd~~f~~kl~~~~~~~~~f 674 (1095)
|+||.+||+|||..||+||..|+|+|..|.|.||..|+|+|..+|.|||.+||||+.+|+++|.+++.|++..++.+..|
T Consensus 455 e~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~liDees~fP~~td~tl~~k~~~q~~~~~~y 534 (1062)
T KOG4229|consen 455 EQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLIDEESRFPKATDQTLLLKLNMQHGSNNLY 534 (1062)
T ss_pred HHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhheecccCcCCchHHHHHHHHhhhhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876655
Q ss_pred ccC---CCCCeEEeccCccccccccchhhhccCcchHHHHHHHhhchHHHHHHh-hcccCCCC----------CCCC---
Q 001346 675 KGE---RGRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQVLQLF-ASKMLKPS----------PKPA--- 737 (1095)
Q Consensus 675 ~~~---~~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l~~lf-~~~~~~~~----------~~~~--- 737 (1095)
..+ ....|+|.||||.|.|++.||++||+|.++.|+..++.+|.+.+...+ .......+ ..+.
T Consensus 535 ~~~k~~~e~~f~I~Hyagkv~y~~~~flekNrD~~~~d~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ra~~~~~~~~~~ 614 (1062)
T KOG4229|consen 535 VFPKSRVETVFGITHYAGKVQYNIRGFLEKNRDTVRNDLVNLLRSSDESLLRQLVNGDPTAVSRWFELRALKVAMPVPLE 614 (1062)
T ss_pred ccccccccceeeeeeecceehhhhhhHHHhhhhhhhhhHHhhcccccchhhcccCCCCCccCCcchhhhhhcccccccch
Confidence 433 357899999999999999999999999999999999999887765433 21111110 0000
Q ss_pred CCCCC-----CCCCc----------CccchHHHHHHHHHHHHHHHhccCCeeeEeccCCCCCCCcccchh-HHHHhhhhh
Q 001346 738 ASSQP-----GALDT----------QKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEED-LVLQQFRCC 801 (1095)
Q Consensus 738 ~~~~~-----~~~~~----------~~~tv~~~fk~qL~~L~~~L~~t~~hfIrCIkPN~~k~p~~fd~~-~V~~QLr~~ 801 (1095)
+.... +..++ ...+++.+++-++....+.|.+..+||.|||++|+.-.+..++.. .+..++...
T Consensus 615 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~s~l~rg~~~~~~~i~~~~~~~~~q~~~~~~~~~~~~~~ 694 (1062)
T KOG4229|consen 615 VTLRRPVRKTLTADSSRSAPETTNCLPDKVLPEDRPSLFEELSALARGQDHFMRAISQNPRYALEQGSQERKGPRRLSSR 694 (1062)
T ss_pred hhhccccccccccccccchHHHHHhhhccccccCChhhhcchhhcCCCccchhhhhhcCchhhhhhcCcccCchhhhhhc
Confidence 00111 11111 134567777778999999999999999999999999888888877 889999999
Q ss_pred chhHHHHHHhhCCCcccchhhHHHhhhccccccccCCChH-HHHHHHHHhcCCCCcceeeceeeeeeccchhHHhhhhhh
Q 001346 802 GVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQLSQDPL-SISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRK 880 (1095)
Q Consensus 802 gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~~d~~-~~~~~iL~~~~l~~~~yqiGkTKVFLr~g~l~~LE~~R~ 880 (1095)
|..++....+.|+..+..|++++++++..........+.. ..|..++... ..+++..+.+.++.+..--..+.-.+.
T Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~ 772 (1062)
T KOG4229|consen 695 GSTATPSHDRPGRKTNLLYSEVVNGRKNSEYLCSPRPDLAERARVQLLEKN--AINMKSERLTTLLPRYIPDPCLDPVRR 772 (1062)
T ss_pred ccccCCCCCCccccccccchhhhcccccccccCCCCHHHHHHHHHHHHhhc--cccchhhhhcccccccCccccCCcccc
Confidence 9999999999999999999999988876554432211211 2344444433 336788888888876543333332233
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhhhhh----HHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHhhhHHHHHHHHHHHH
Q 001346 881 QVLQAIIRLQKCFRGYQARSRFRELCN----GVITLQSFARGENTRRRHASLGKSCSAVVPEIRDEQLREIICLQSAIRG 956 (1095)
Q Consensus 881 ~~l~aai~IQa~~Rg~~aRr~y~~lr~----aai~IQs~~Rg~~aRr~y~~lr~~AA~~IQ~~~~~~~~Aai~IQs~~Rg 956 (1095)
......+..|..++.|..++++...+. ..+.+|.-++....+..++.+-. +.-.+++.+|..|-|
T Consensus 773 e~~t~~~l~~~~kk~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~-----------~~~~~~v~~~~~~t~ 841 (1062)
T KOG4229|consen 773 ERVTQLRLHQHKKKAFPQPLRSPQVRKSKLESYLAIAKELFVRRFLENQKKIGL-----------RFPDNVVLRQVSYTG 841 (1062)
T ss_pred chhhhHHHHHhhccccCccccccchhhccchhhhhhhhHHHHHHHHHhhhhhcc-----------CCChHHHHHhhhchh
Confidence 334445566777777777666554432 45667776666666655433322 122445555555555
Q ss_pred HHHHHH
Q 001346 957 WLVRKQ 962 (1095)
Q Consensus 957 ~laRr~ 962 (1095)
.+.+.+
T Consensus 842 ~~~~~~ 847 (1062)
T KOG4229|consen 842 ELDQEQ 847 (1062)
T ss_pred hhccch
Confidence 444333
No 23
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=98.71 E-value=1.6e-08 Score=106.81 Aligned_cols=90 Identities=24% Similarity=0.267 Sum_probs=68.1
Q ss_pred hhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHhcCCCcchHHHHHhhhHHHHHhc-ccccCCCCCCCc
Q 001346 276 VYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGSEGIEYEILQTNHILEAFG-NAKTSRNDNSSR 354 (1095)
Q Consensus 276 iyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~~~~~~ie~~il~snpiLEAFG-NAkT~rN~NSSR 354 (1095)
||+.+..++..|+ ++.|+||+..|+||||||+|+.--. ...|-....-+.+++.....+++. +|.|.+|++|||
T Consensus 8 vf~~~~~~v~~~~-~G~n~~i~~yG~tGsGKT~Tm~G~~----~~~Giip~~~~~~~~ll~~g~~~R~~~~t~~N~~SSR 82 (186)
T cd01363 8 VFRDVGPLLQSAL-DGYNVCIFAYGQTGSGKTYTMEGKR----EGAGIIPRTVTDVIDLMDKGNANRTTAATAMNEHSSR 82 (186)
T ss_pred HHHHHHHHHHHHh-CCcceeEEEECCCCCcceEecCCCC----CCCCcchHHHHHHHHHHhhccccccccccCCCCccCc
Confidence 8888889999998 5799999999999999998865211 000000112233677788888999 999999999999
Q ss_pred cccEEEEEEcCCCcee
Q 001346 355 FGKLIEIHFSAFGKIC 370 (1095)
Q Consensus 355 FGK~i~l~f~~~g~i~ 370 (1095)
+..+++|++.......
T Consensus 83 sH~i~~i~v~~~~~~~ 98 (186)
T cd01363 83 SHSVFRIHFGGKNALA 98 (186)
T ss_pred ccEEEEEEEEEeecCC
Confidence 9999999998654433
No 24
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.60 E-value=7.8e-06 Score=109.19 Aligned_cols=375 Identities=12% Similarity=0.061 Sum_probs=175.0
Q ss_pred eeeccccccccccCCCCcccchhhhhcCCChhhH----HhcCCCCCCCCCcccCCCccccCCcchHHHHHHHHHHHhhcC
Q 001346 376 TFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLK----ERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLMEALDIVL 451 (1095)
Q Consensus 376 ~yLLEksRVv~~~~gERnfHIFYqLl~G~~~~~~----~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~l~~Al~~lG 451 (1095)
.+....+..+.+.++..+|+-|+.+.-+.++..- +.|.| ..++.+.|. ++..+..-|-.+..+.
T Consensus 219 vLeaFGNa~tvrn~NssRFgkfirI~F~~~G~i~~a~Ie~yLL---EKsRv~~Q~-----~~Er~yhiFyqlls~~---- 286 (1930)
T KOG0161|consen 219 VLEAFGNAKTVRNDNSSRFGKFIRIHFDATGKIAGADIETYLL---EKSRVIRQA-----PGERNYHIFYQLLSGA---- 286 (1930)
T ss_pred hHHHhcChhhhcCCCCcccceeEEEecCCCCccchhhHHHHHH---HHhHhhccC-----cchhHHHHHHHHHhCC----
Confidence 4455578888899999999999999887654321 12211 122333333 2323333444443322
Q ss_pred CCHHHHHHHH--HHHHHHHHhcCceEEEecCCCceeecChHHHHHHHHhcCCCHHHHHHhHhh--cEEeeCCceEEecCC
Q 001346 452 IRKEDREQTF--AMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALST--HKIQAGKDSIAKKLT 527 (1095)
Q Consensus 452 ~~~~e~~~i~--~iLaAILhLGni~F~~~~~~~~~~~~~~~~l~~aa~LLgv~~~~L~~~L~~--~~~~~~~e~i~~~l~ 527 (1095)
++......+ .-+.--.+++|... ..++-+ .......+..|-..||+++++...++.- -.+..|+=.+...-.
T Consensus 287 -~~~l~~~l~L~~~~~~Y~f~~~~~~-~i~g~d--d~eef~~t~~a~~ilgfs~~E~~~~~~i~sailhlGn~~f~~~~~ 362 (1930)
T KOG0161|consen 287 -DPELKEELLLSDNVKDYKFLSNGES-TIPGVD--DAEEFQETDEAMDILGFSEEEKISIFRIVSAILHLGNIKFKQEPR 362 (1930)
T ss_pred -CHHHHHHHhhcccchhhhhhccccC-CCCCcc--hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcchhhhcccc
Confidence 222111110 00111112222222 111000 0011234667888999999998877632 122233322222113
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHhcccccccCCCCccceeEeecccCcccCCCCChhHHHhhhhhHHHHHHHH
Q 001346 528 LQQAIDSRDALAKFI-----YGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFN 602 (1095)
Q Consensus 528 ~~qA~~~rDalak~L-----Y~~LF~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNEkLQ~~f~ 602 (1095)
.+||.-.....|-.+ |...+-|-.-.+++ ....+-.++.|+.. +| .+++=+-|...-.
T Consensus 363 ~~qa~~~~~~~a~ka~~llg~~~~~~~~al~~pr---------iKvg~e~v~k~q~~------~q--~~~~v~alAk~lY 425 (1930)
T KOG0161|consen 363 EEQAEFDNTEVADKACHLLGINVEEFLKALLRPR---------IKVGREWVSKAQNV------EQ--VLFAVEALAKALY 425 (1930)
T ss_pred ccccCCCCchHHHHHHHHcCCCHHHHHHHhcccc---------eeccchhhhhcchH------HH--HHHHHHHHHHHHH
Confidence 334432222222211 22222222222211 12333445555533 33 6777777777777
Q ss_pred HhhhhhhHhhhhhcCCceeeecccChHHHHHHHhcCCCccccccccccCCCCCChHH----H-HHHHHHHhCCCCccccC
Q 001346 603 RHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLT----F-ANKLKQHLGSNSCFKGE 677 (1095)
Q Consensus 603 ~~~F~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~~p~Gll~lLDeE~~~p~~sd~~----f-~~kl~~~~~~~~~f~~~ 677 (1095)
..+|. .+-.+...+++|. .+-..+|.+++-...=||.. .|=+- | .+||++.|+.|-.+.-.
T Consensus 426 erlF~-wlV~riN~sld~~----~~~~~fIgvLDiaGFEIfe~---------nSFEQLciNytnEkLQqfFnh~mFvlEq 491 (1930)
T KOG0161|consen 426 ERLFG-WLVKRINKSLDSK----QQRDYFIGVLDIAGFEIFEF---------NSFEQLCINYTNEKLQQFFNHHMFVLEQ 491 (1930)
T ss_pred HHHHH-HHHHHHHHHhhhc----cccCCcceeeeeccccccCc---------CCHHHHHHHHHHHHHHhhhcchhhhhhH
Confidence 77774 4667778888887 34444555554321112211 11111 1 35666666655432211
Q ss_pred -----CCCCeEEeccCccccccccchhhhccCcch---HHHHHHHh-------hchH-HHHHHhhcccCCCCCCCCCCCC
Q 001346 678 -----RGRAFSIRHYAGEVPYDTNGFLEKNRDPLQ---TDIIQLLS-------SCTC-QVLQLFASKMLKPSPKPAASSQ 741 (1095)
Q Consensus 678 -----~~~~F~I~HyaG~V~Y~~~gfleKN~D~l~---~d~~~ll~-------~S~~-~l~~lf~~~~~~~~~~~~~~~~ 741 (1095)
-+-++..-|| |+-..+...|- ..++.+|. +++. .+-+++.... + ..|
T Consensus 492 eeY~~EgIew~fidf---------G~Dlq~~idLIEkp~Gi~slLdEEc~~PkAtd~tf~~kL~~~~~-g--k~~----- 554 (1930)
T KOG0161|consen 492 EEYQREGIEWDFIDF---------GLDLQPTIDLIEKPMGILSLLDEECVVPKATDKTFLEKLCDQHL-G--KHP----- 554 (1930)
T ss_pred HHHHHhCCceeeecc---------ccchhhhHHHHhchhhHHHHHHHHHhcCCCccchHHHHHHHHhh-c--cCc-----
Confidence 1456777777 33333222111 12333331 1111 1122322211 0 000
Q ss_pred CCCCCcCccchHHHHHHHHHHHHHHHhccCCeeeEeccCCCCCCCcccchhHHHHhhhhhchhHHHHHHhhCCCcccchh
Q 001346 742 PGALDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQ 821 (1095)
Q Consensus 742 ~~~~~~~~~tv~~~fk~qL~~L~~~L~~t~~hfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~ 821 (1095)
..+++. ..+....+....-+.+ |+|.-+|--.++..-....|+.+|+|++ .+.|.....| +..+.
T Consensus 555 ----~f~~~k-----~~~~~~~F~l~HyaG~--V~Y~~~~WL~Knkdpln~~v~~ll~~s~-~~~v~~l~~~---~~~~~ 619 (1930)
T KOG0161|consen 555 ----KFQKPK-----GKKAEAHFALVHYAGT--VDYNVDGWLEKNKDPLNDNVVSLLKQST-NKLVSSLFQD---YAGAA 619 (1930)
T ss_pred ----cccCcc-----cccchhhhheeeecce--eccCccchhhcCCCCchHHHHHHHHhcc-cHHHHHHhhh---hhccc
Confidence 001111 1122223333333333 9999999888888888889999999999 8888777555 55555
Q ss_pred hHHHhhhc
Q 001346 822 EFAGRYGV 829 (1095)
Q Consensus 822 eF~~RY~~ 829 (1095)
.+..++..
T Consensus 620 ~~~~~~~~ 627 (1930)
T KOG0161|consen 620 AAAKGGEA 627 (1930)
T ss_pred hhhhhhhh
Confidence 55555543
No 25
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=98.04 E-value=1.4e-05 Score=63.66 Aligned_cols=42 Identities=26% Similarity=0.377 Sum_probs=38.9
Q ss_pred CcEEEEEcCCCCEEEEEEEEeeCCeEEEEecCCeEEEEeCCC
Q 001346 158 KLRVWCRLEDGKWESGMIQSTSGDEAFVLLSNGNVVKVSTGE 199 (1095)
Q Consensus 158 ~~~vW~~~~~~~~~~~~v~~~~~~~~~v~~~~g~~~~v~~~~ 199 (1095)
|..||+|+++++|..|+|++..++.++|.+.+|+..+|+.++
T Consensus 1 K~~vWvpD~~egfv~g~I~~~~g~~vtV~~~~G~~~tv~~dd 42 (42)
T PF02736_consen 1 KKWVWVPDPKEGFVKGEIIEEEGDKVTVKTEDGKEVTVKKDD 42 (42)
T ss_dssp TTEEEEEESSSSEEEEEEEEEESSEEEEEETTTEEEEEEGGG
T ss_pred CCEEEEeCCcccEEEEEEEEEcCCEEEEEECCCCEEEeCCCC
Confidence 458999999999999999999999999999999999998754
No 26
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=97.58 E-value=1.7e-05 Score=101.21 Aligned_cols=165 Identities=19% Similarity=0.194 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHHhccCCeeeEeccCCCCCCCcccchhHHHHhhhhhchhHHHHHHhhCCCcccchhhHHHhhhcccccc
Q 001346 755 KFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEK 834 (1095)
Q Consensus 755 ~fk~qL~~L~~~L~~t~~hfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~ 834 (1095)
++......++..+....|.|++||+-|..+....|+...|..|+++.|+++..++.+.+|+..+++..|...+.++.+..
T Consensus 794 ~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~t~~~~~~~v~~~~~~~~i~~~~~~~~~~i~~~~~ 873 (1062)
T KOG4229|consen 794 SPQVRKSKLESYLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSYTGELDQEQVRRSLYFAEISPQDSVNQSRIGLPET 873 (1062)
T ss_pred ccchhhccchhhhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhchhhhccchheeccccccccchhccccccccCCcc
Confidence 55566778999999999999999999988888899999999999999999999999999999999999999999988732
Q ss_pred ccCCChHHHHHHHHHhcCCCCcceeeceeeeeeccchhHHhhhhhh-hHHH-HHHHHHHHHhhhhhhhhhhhhhhHHHHH
Q 001346 835 QLSQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRK-QVLQ-AIIRLQKCFRGYQARSRFRELCNGVITL 912 (1095)
Q Consensus 835 ~~~~d~~~~~~~iL~~~~l~~~~yqiGkTKVFLr~g~l~~LE~~R~-~~l~-aai~IQa~~Rg~~aRr~y~~lr~aai~I 912 (1095)
. ..........+....+.++.|.+++|+...-...++..-. .... .+...|++++-...|+.+..+..+.+.+
T Consensus 874 ~-----~~v~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~v~~ 948 (1062)
T KOG4229|consen 874 V-----DTVADEEFSTLSCNADTIRLGVHVVFLLLNERSRTEVALKDEANDELSFFKQKWFRLTLERKGLLRLSEGSVLI 948 (1062)
T ss_pred c-----hhhchhheeecccCccchhccceEEeecccchHHHHHHHhHhhHHHHHHHHHHHHHhhhccccchhhcchhHHH
Confidence 1 1111122233344667899999999988766555544332 2222 2567899999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 001346 913 QSFARGENTRRRHA 926 (1095)
Q Consensus 913 Qs~~Rg~~aRr~y~ 926 (1095)
| |++++.|+...
T Consensus 949 ~--~~~~~~~~~~~ 960 (1062)
T KOG4229|consen 949 Q--RLELLGRRTCP 960 (1062)
T ss_pred H--HHHHhcccCCc
Confidence 9 78887776433
No 27
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=97.51 E-value=0.0025 Score=80.11 Aligned_cols=70 Identities=17% Similarity=0.250 Sum_probs=58.1
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhH-----Hh---hhHHHHHHHHHHHHHHHHHHHH-HHH
Q 001346 897 QARSRFRELCNGVITLQSFARGENTRRRHASLGKSCSAVVPEIR-----DE---QLREIICLQSAIRGWLVRKQLK-MHK 967 (1095)
Q Consensus 897 ~aRr~y~~lr~aai~IQs~~Rg~~aRr~y~~lr~~AA~~IQ~~~-----~~---~~~Aai~IQs~~Rg~laRr~~~-l~~ 967 (1095)
+..++-..+..+++.||+.+|++..|+.|..+|. +++.||+.+ ++ ...|++.||+.||+++.||.|+ ++.
T Consensus 664 le~~R~~vl~~~~~~iq~~~r~~~~r~~f~~~r~-~~~~~Q~~~rG~~~r~~~~~~~aai~~q~~~r~~~~r~~y~~~~~ 742 (862)
T KOG0160|consen 664 LEARRSDVLSAAKVLIQRQIRGYLARKKFLQLRS-AVIIIQAYSRGVLARRETEREAAAIGIQKECRSYLNRRRYRALIP 742 (862)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3444445566788899999999999999998876 789999998 44 6678999999999999999999 554
No 28
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=97.14 E-value=0.00055 Score=46.29 Aligned_cols=20 Identities=45% Similarity=0.677 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001346 945 REIICLQSAIRGWLVRKQLK 964 (1095)
Q Consensus 945 ~Aai~IQs~~Rg~laRr~~~ 964 (1095)
+|++.||+.||||++|+.|+
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 57788888888888887764
No 29
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=97.04 E-value=0.00059 Score=85.69 Aligned_cols=81 Identities=25% Similarity=0.399 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh-------------------------------h-
Q 001346 884 QAIIRLQKCFRGYQARSRFRELCNGVITLQSFARGENTRRRHASLGK-------------------------------S- 931 (1095)
Q Consensus 884 ~aai~IQa~~Rg~~aRr~y~~lr~aai~IQs~~Rg~~aRr~y~~lr~-------------------------------~- 931 (1095)
.++..||.++|||..|+.|..++..++.||+.+||+..|+.|..+-. .
T Consensus 811 ~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~ 890 (975)
T KOG0520|consen 811 AAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQET 890 (975)
T ss_pred hHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhcccc
Confidence 46788999999999999999999999999999999998888866411 0
Q ss_pred hhccchhhH-----------HhhhHHHHHHHHHHHHHHHHHHHH
Q 001346 932 CSAVVPEIR-----------DEQLREIICLQSAIRGWLVRKQLK 964 (1095)
Q Consensus 932 AA~~IQ~~~-----------~~~~~Aai~IQs~~Rg~laRr~~~ 964 (1095)
|++.||..+ ++..+|+++||+.+|-+.+|.+++
T Consensus 891 a~t~~e~~yd~yKq~~~~~~~r~~~A~~~VQsm~rs~~a~qqyr 934 (975)
T KOG0520|consen 891 AATVIEDCYDFYKQLRKQTEERLTRAVVRVQSMFRSPKAQQQYR 934 (975)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 455555544 334567777777777777776666
No 30
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.40 E-value=0.0041 Score=42.02 Aligned_cols=18 Identities=50% Similarity=0.859 Sum_probs=9.5
Q ss_pred HHHHHHHHHhhhhhhhhh
Q 001346 885 AIIRLQKCFRGYQARSRF 902 (1095)
Q Consensus 885 aai~IQa~~Rg~~aRr~y 902 (1095)
+++.||++||||++|++|
T Consensus 3 aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 3 AAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 445555555555555554
No 31
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=96.14 E-value=0.063 Score=69.83 Aligned_cols=135 Identities=19% Similarity=0.225 Sum_probs=85.9
Q ss_pred HHHHHHHHHhhhhh----hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHhhhHHHHHHHHHHHHHHHH
Q 001346 885 AIIRLQKCFRGYQA----RSRFRELCNGVITLQSFARGENTRRRHASLGKSCSAVVPEIRDEQLREIICLQSAIRGWLVR 960 (1095)
Q Consensus 885 aai~IQa~~Rg~~a----Rr~y~~lr~aai~IQs~~Rg~~aRr~y~~lr~~AA~~IQ~~~~~~~~Aai~IQs~~Rg~laR 960 (1095)
...-||+.|||++. ...+.....-++.+|++.||.++|+.|....+ .++....+++.||+.+|+...|
T Consensus 567 ~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q--------~~~~~~~~~i~iqs~~r~f~~r 638 (1401)
T KOG2128|consen 567 FVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQ--------YFKDNMTKIIKIQSKIRKFPNR 638 (1401)
T ss_pred hHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHH--------HHHHhhhhHHHHHHHHHhcccc
Confidence 57789999999983 33444557789999999999999999987654 2344567899999999999999
Q ss_pred HHHH-HHHhhh-cCchHHHHHHHhhchhhccccCcHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001346 961 KQLK-MHKLKQ-SNPVNAKVKRRSGRKSSDMKDVPQEQVQALPTALAELQRRVLKAEATLGQKEEENAALR 1029 (1095)
Q Consensus 961 r~~~-l~~~~~-~~~~~~~~k~k~~~k~~el~~~~~e~~~~l~~~l~elq~~~~eae~~l~~leeE~~~Lk 1029 (1095)
..|+ +.-..- .....++..-.+.....+ -..+-++.+++.++...-+..++.++.+.++.+++.-|-
T Consensus 639 ~~y~~L~~s~npsl~~vrkFV~lld~~~~d--f~~e~~le~lr~eIsrk~~sne~Lekdi~~md~kIgLLv 707 (1401)
T KOG2128|consen 639 KDYKLLFTSENPSLETVRKFVHLLDQTDVD--FEEELELEKLREEISRKIRSNEQLEKDINEMDEKIGLLV 707 (1401)
T ss_pred hHHHHHhcCCCCchhhHHhhhhhcCCccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 9999 443211 111111221111100000 011233555666666666666666666666666665543
No 32
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.96 E-value=0.0055 Score=71.46 Aligned_cols=64 Identities=25% Similarity=0.410 Sum_probs=46.6
Q ss_pred EcCCCCCCCCChHHHHHHcccCCCCCchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHH-HHHHHHHH
Q 001346 249 VNPFKAVPIYGNKFITAYRQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETA-KFAMQYLA 318 (1095)
Q Consensus 249 vNP~k~l~~Y~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~-K~il~yLa 318 (1095)
+|||...| |+..+-..++.+...|-|-| -+.-|..-..||+||++||.|||||+-. +.++.|-.
T Consensus 24 ~Npf~~~p-~s~rY~~ilk~R~~LPvw~~-----k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~ 88 (699)
T KOG0925|consen 24 INPFNGKP-YSQRYYDILKKRRELPVWEQ-----KEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYEL 88 (699)
T ss_pred cCCCCCCc-CcHHHHHHHHHHhcCchHHh-----HHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHH
Confidence 99999998 78888777776665564433 3445555678999999999999999754 33444443
No 33
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=95.69 E-value=0.011 Score=42.08 Aligned_cols=21 Identities=48% Similarity=0.711 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 001346 944 LREIICLQSAIRGWLVRKQLK 964 (1095)
Q Consensus 944 ~~Aai~IQs~~Rg~laRr~~~ 964 (1095)
.++++.||+.|||+++|+.|+
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 568889999999999998874
No 34
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=95.54 E-value=0.021 Score=69.17 Aligned_cols=58 Identities=21% Similarity=0.125 Sum_probs=47.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHH--hhhHHHHHHHHHHHHHHHHHHHH
Q 001346 905 LCNGVITLQSFARGENTRRRHASLGKSCSAVVPEIRD--EQLREIICLQSAIRGWLVRKQLK 964 (1095)
Q Consensus 905 lr~aai~IQs~~Rg~~aRr~y~~lr~~AA~~IQ~~~~--~~~~Aai~IQs~~Rg~laRr~~~ 964 (1095)
+..-++.||+.|||+++|.+|++++. ++++|+ +|+ +.+..+..||..+||+..+|.+.
T Consensus 695 l~~lvtllQK~~RG~~~R~ry~rmka-~~~ii~-wyR~~K~ks~v~el~~~~rg~k~~r~yg 754 (1001)
T KOG0164|consen 695 LPSLVTLLQKAWRGWLARQRYRRMKA-SATIIR-WYRRYKLKSYVQELQRRFRGAKQMRDYG 754 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHhhhhccccC
Confidence 34567889999999999999999886 344454 774 45567889999999999999887
No 35
>PTZ00014 myosin-A; Provisional
Probab=95.42 E-value=0.025 Score=72.42 Aligned_cols=42 Identities=17% Similarity=0.166 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHhhhHHHHHHHHHHHHHHHHHH
Q 001346 906 CNGVITLQSFARGENTRRRHASLGKSCSAVVPEIRDEQLREIICLQSAIRGWLVRKQ 962 (1095)
Q Consensus 906 r~aai~IQs~~Rg~~aRr~y~~lr~~AA~~IQ~~~~~~~~Aai~IQs~~Rg~laRr~ 962 (1095)
...+..||++|||+++|++|..++ .++++||+.||+|+++|.
T Consensus 777 ~~~~~~iq~~~r~~~~r~~~~~~~---------------~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 777 EPLVSVLEALILKIKKKRKVRKNI---------------KSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHhc
Confidence 456889999999999999998765 479999999999999875
No 36
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=95.38 E-value=1.4 Score=54.21 Aligned_cols=32 Identities=28% Similarity=0.579 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHH
Q 001346 884 QAIIRLQKCFRGYQARSRFRELCNGVITLQSF 915 (1095)
Q Consensus 884 ~aai~IQa~~Rg~~aRr~y~~lr~aai~IQs~ 915 (1095)
.+++++|++.|||++|++++....++..+-+.
T Consensus 814 e~v~k~Q~~~Rg~L~rkr~~~ri~~~~K~~~l 845 (1259)
T KOG0163|consen 814 ECVLKAQRIARGYLARKRHRPRIAGIRKINAL 845 (1259)
T ss_pred HHHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Confidence 35789999999999999998876655544443
No 37
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.74 E-value=0.022 Score=55.29 Aligned_cols=23 Identities=48% Similarity=0.595 Sum_probs=21.2
Q ss_pred EEEEcCCCCCChhhHHHHHHHHH
Q 001346 295 SIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il~yL 317 (1095)
.|+|+|.||||||+.++.+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999998875
No 38
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=94.65 E-value=0.035 Score=39.55 Aligned_cols=20 Identities=30% Similarity=0.345 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 001346 906 CNGVITLQSFARGENTRRRH 925 (1095)
Q Consensus 906 r~aai~IQs~~Rg~~aRr~y 925 (1095)
..+++.||++|||+++|+.|
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34566666667777766666
No 39
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=93.52 E-value=0.052 Score=53.17 Aligned_cols=29 Identities=34% Similarity=0.447 Sum_probs=20.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
+...+++|+|++|+|||..++.+++-+..
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~ 30 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNA 30 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHH
Confidence 35678999999999999999999887764
No 40
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=93.49 E-value=0.057 Score=56.04 Aligned_cols=33 Identities=30% Similarity=0.518 Sum_probs=22.7
Q ss_pred hhCCCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 288 MGDGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 288 ~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
...+....|+|.|++|+|||...+.+++++...
T Consensus 19 ~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 19 AQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp TSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred HHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 456778999999999999999999998888764
No 41
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=93.49 E-value=2.2 Score=56.65 Aligned_cols=70 Identities=24% Similarity=0.116 Sum_probs=52.6
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh--hhccchhhH--------HhhhHHHHHHHHHHHHHHHHHHHH
Q 001346 895 GYQARSRFRELCNGVITLQSFARGENTRRRHASLGKS--CSAVVPEIR--------DEQLREIICLQSAIRGWLVRKQLK 964 (1095)
Q Consensus 895 g~~aRr~y~~lr~aai~IQs~~Rg~~aRr~y~~lr~~--AA~~IQ~~~--------~~~~~Aai~IQs~~Rg~laRr~~~ 964 (1095)
+.+.-+|-..+...++.||+.|||+..|++|....++ +...+|.-+ ....++++.+|..||....|..++
T Consensus 734 ~~LE~~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~ 813 (1463)
T COG5022 734 AALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYR 813 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccchHHHhHHHhhHHhHHHhhHHHHH
Confidence 3445556666778899999999999999999876554 444444444 223478999999999999998887
No 42
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=93.44 E-value=0.052 Score=52.71 Aligned_cols=22 Identities=50% Similarity=0.501 Sum_probs=21.0
Q ss_pred EEEcCCCCCChhhHHHHHHHHH
Q 001346 296 IIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 296 IiisGESGAGKTe~~K~il~yL 317 (1095)
|+|+|-+|||||+.++.+.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999986
No 43
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=93.27 E-value=0.1 Score=50.82 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=25.8
Q ss_pred hCCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 289 GDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 289 ~~~~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
.......++|.|++|+|||..++.+.+.+.
T Consensus 15 ~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 15 ELPPPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred hCCCCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 344567999999999999999999988875
No 44
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.04 E-value=0.069 Score=55.75 Aligned_cols=25 Identities=40% Similarity=0.534 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 294 QSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
+.|+|+|.||||||+.++.+...+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999998876653
No 45
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=93.01 E-value=0.092 Score=58.36 Aligned_cols=28 Identities=36% Similarity=0.469 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
.....++|+|++|+|||+.++.+...+.
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 3456899999999999999999877654
No 46
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=92.85 E-value=0.74 Score=58.93 Aligned_cols=61 Identities=26% Similarity=0.370 Sum_probs=50.3
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHhhhHHHHHHHHHHHHHHHHHHHH
Q 001346 885 AIIRLQKCFRGYQARSRFRELCNGVITLQSFARGENTRRRHASLGKSCSAVVPEIRDEQLREIICLQSAIRGWLVRKQLK 964 (1095)
Q Consensus 885 aai~IQa~~Rg~~aRr~y~~lr~aai~IQs~~Rg~~aRr~y~~lr~~AA~~IQ~~~~~~~~Aai~IQs~~Rg~laRr~~~ 964 (1095)
..+.++..++++..|. .-.++..||.++|||+.|+.|..+|+. ++.||+++||+-.|+.|+
T Consensus 793 ~~m~~~~a~~~~~~r~----~~~aa~~iq~~f~~yk~r~~~l~tr~p---------------~v~iqa~~rg~q~r~dy~ 853 (975)
T KOG0520|consen 793 VSMKASSAFSMCDDRS----DPAAASRIQKKFRGYKQRKEFLSTRQP---------------IVKIQAAVRGYQVRKDYR 853 (975)
T ss_pred hhhhcccchhcCcccc----chhHHHHhhhhhhhHHhhhhhcccCCc---------------cccchhhhhchhHhhhhh
Confidence 3456777777555544 346789999999999999999988864 889999999999999999
No 47
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=92.71 E-value=0.096 Score=46.25 Aligned_cols=22 Identities=45% Similarity=0.607 Sum_probs=20.8
Q ss_pred EEEcCCCCCChhhHHHHHHHHH
Q 001346 296 IIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 296 IiisGESGAGKTe~~K~il~yL 317 (1095)
|.|+|.+|||||+.++.+.+.|
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999888
No 48
>PRK05480 uridine/cytidine kinase; Provisional
Probab=92.11 E-value=0.13 Score=55.21 Aligned_cols=27 Identities=37% Similarity=0.340 Sum_probs=23.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
++.--|.|+|.||||||+.++.|.+.|
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998876
No 49
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=92.11 E-value=1.9 Score=56.83 Aligned_cols=67 Identities=30% Similarity=0.442 Sum_probs=51.1
Q ss_pred HHHHHHHhhhhhhhhhhhhhh-------HHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHhhhHHHHHHHHHHHHHHH
Q 001346 887 IRLQKCFRGYQARSRFRELCN-------GVITLQSFARGENTRRRHASLGKSCSAVVPEIRDEQLREIICLQSAIRGWLV 959 (1095)
Q Consensus 887 i~IQa~~Rg~~aRr~y~~lr~-------aai~IQs~~Rg~~aRr~y~~lr~~AA~~IQ~~~~~~~~Aai~IQs~~Rg~la 959 (1095)
.++|+..||+..|..+..... .+.-||+.|||++. |.-... +|....+-++.+|++.||.++
T Consensus 539 ~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~---~~~~~~--------~~~~~~~evv~~qs~~R~~ls 607 (1401)
T KOG2128|consen 539 LRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQ---YIPRDV--------YLDSAKKEVVKFQSLTRGALS 607 (1401)
T ss_pred hhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhh---hchHHH--------HHHHhhHHHHHHHHHHHHHHH
Confidence 355999999998888765432 57889999999986 322111 344556889999999999999
Q ss_pred HHHHH
Q 001346 960 RKQLK 964 (1095)
Q Consensus 960 Rr~~~ 964 (1095)
|+.+.
T Consensus 608 rk~~~ 612 (1401)
T KOG2128|consen 608 RKKYS 612 (1401)
T ss_pred HhhHH
Confidence 99988
No 50
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=92.07 E-value=0.1 Score=50.86 Aligned_cols=23 Identities=43% Similarity=0.723 Sum_probs=21.6
Q ss_pred EEEcCCCCCChhhHHHHHHHHHH
Q 001346 296 IIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 296 IiisGESGAGKTe~~K~il~yLa 318 (1095)
|+|.|++|+|||+.++.+.+++-
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 79999999999999999999974
No 51
>PRK06696 uridine kinase; Validated
Probab=91.99 E-value=0.2 Score=54.49 Aligned_cols=39 Identities=18% Similarity=0.147 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 279 IADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 279 vA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
+|+..+.. ..+..--|.|+|.||||||+.++.|.+.|..
T Consensus 10 la~~~~~~--~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 10 LAEHILTL--NLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred HHHHHHHh--CCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45554442 3556788999999999999999999998864
No 52
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=91.93 E-value=0.11 Score=55.52 Aligned_cols=25 Identities=24% Similarity=0.615 Sum_probs=22.4
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 295 SIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
.|+|+|.+|||||++.+.++.++..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 5899999999999999999888764
No 53
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=91.83 E-value=0.18 Score=52.04 Aligned_cols=29 Identities=38% Similarity=0.412 Sum_probs=25.6
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYLAALG 321 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yLa~~~ 321 (1095)
.-.|.|+|.||||||+.++.+-+.|-..+
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g 30 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARG 30 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 45799999999999999999999998764
No 54
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=91.62 E-value=0.14 Score=49.43 Aligned_cols=23 Identities=39% Similarity=0.543 Sum_probs=20.4
Q ss_pred CceEEEEcCCCCCChhhHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAM 314 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il 314 (1095)
..+.+.|.|+||||||+.++.++
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 45889999999999999999875
No 55
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=91.61 E-value=0.12 Score=49.84 Aligned_cols=28 Identities=32% Similarity=0.456 Sum_probs=24.6
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
.+.|+|.|.+|+|||+.++.+...+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 5789999999999999999998877654
No 56
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=91.61 E-value=0.19 Score=57.96 Aligned_cols=35 Identities=29% Similarity=0.469 Sum_probs=28.3
Q ss_pred HHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 283 AYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 283 Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
....++..+. .|||+|..|||||++.+.++.++..
T Consensus 136 ~L~~~v~~~~--nilI~G~tGSGKTTll~aL~~~i~~ 170 (323)
T PRK13833 136 VIRSAIDSRL--NIVISGGTGSGKTTLANAVIAEIVA 170 (323)
T ss_pred HHHHHHHcCC--eEEEECCCCCCHHHHHHHHHHHHhc
Confidence 3455566554 5999999999999999999998764
No 57
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=91.61 E-value=0.14 Score=52.35 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=21.6
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
....|+|.|+||||||+.+..+++.
T Consensus 13 ~g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 13 GGIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3689999999999999999877664
No 58
>PRK00300 gmk guanylate kinase; Provisional
Probab=91.59 E-value=0.12 Score=55.03 Aligned_cols=26 Identities=35% Similarity=0.418 Sum_probs=23.2
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
..+.|+|.|.||||||+.++.+...+
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 56889999999999999999988764
No 59
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=91.51 E-value=0.12 Score=54.91 Aligned_cols=26 Identities=50% Similarity=0.535 Sum_probs=23.5
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHHhc
Q 001346 296 IIISGESGAGKTETAKFAMQYLAALG 321 (1095)
Q Consensus 296 IiisGESGAGKTe~~K~il~yLa~~~ 321 (1095)
|-|+|.||||||+.++.+...|...+
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~~~ 27 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNKRG 27 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTTCT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCccC
Confidence 77999999999999999999998644
No 60
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=91.47 E-value=0.2 Score=56.19 Aligned_cols=36 Identities=25% Similarity=0.466 Sum_probs=27.5
Q ss_pred HHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 283 AYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 283 Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
++..+.... .-.|+|+|++|||||++.+.++.++..
T Consensus 71 ~l~~~~~~~-~GlilisG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 71 IFRKLLEKP-HGIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred HHHHHHhcC-CCEEEEECCCCCcHHHHHHHHHhhhCC
Confidence 345555432 346999999999999999999988753
No 61
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=91.40 E-value=0.14 Score=54.50 Aligned_cols=22 Identities=45% Similarity=0.575 Sum_probs=20.0
Q ss_pred EEEcCCCCCChhhHHHHHHHHH
Q 001346 296 IIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 296 IiisGESGAGKTe~~K~il~yL 317 (1095)
|.|+|.||||||+.++.+...|
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999988776
No 62
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=91.40 E-value=0.12 Score=58.74 Aligned_cols=28 Identities=39% Similarity=0.443 Sum_probs=25.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
++.+.+=|.||||||||.+++.||..|-
T Consensus 29 ~~GE~lgiVGESGsGKS~~~~aim~llp 56 (316)
T COG0444 29 KKGEILGIVGESGSGKSVLAKAIMGLLP 56 (316)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHhccC
Confidence 4568889999999999999999999875
No 63
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=91.39 E-value=0.17 Score=54.39 Aligned_cols=28 Identities=36% Similarity=0.364 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
.+...|.|+|.||||||+.++.+...|.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567888999999999999988876653
No 64
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=91.34 E-value=0.28 Score=49.29 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
.....|+++|+.|||||+.+|.+.+.|
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 446689999999999999999988776
No 65
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=91.22 E-value=0.14 Score=53.95 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=21.8
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
-.-|||||.||+|||+.+|.++.-.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4569999999999999999988755
No 66
>PRK05541 adenylylsulfate kinase; Provisional
Probab=91.19 E-value=0.17 Score=52.80 Aligned_cols=29 Identities=34% Similarity=0.346 Sum_probs=25.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
.+...|+|.|.||||||+.++.+...|..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~ 33 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKL 33 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 45678999999999999999999888864
No 67
>PRK08233 hypothetical protein; Provisional
Probab=91.14 E-value=0.13 Score=53.45 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 294 QSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
.-|.|+|.||||||+.++.+..+|.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5689999999999999988877653
No 68
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=90.90 E-value=0.57 Score=51.26 Aligned_cols=35 Identities=29% Similarity=0.300 Sum_probs=29.9
Q ss_pred hCCCceEEEEcCCCCCChhhHHHHHHHHHHHhcCC
Q 001346 289 GDGVNQSIIISGESGAGKTETAKFAMQYLAALGGG 323 (1095)
Q Consensus 289 ~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~~~ 323 (1095)
...+..-|.|+|.||||||+.++.+...|...++.
T Consensus 29 ~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~ 63 (229)
T PRK09270 29 EPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGEL 63 (229)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCC
Confidence 34678899999999999999999999998876553
No 69
>PRK06762 hypothetical protein; Provisional
Probab=90.89 E-value=0.2 Score=51.61 Aligned_cols=25 Identities=48% Similarity=0.586 Sum_probs=22.8
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...|+|+|.+|||||+.++.+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999887
No 70
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=90.81 E-value=0.33 Score=52.39 Aligned_cols=38 Identities=21% Similarity=0.284 Sum_probs=30.8
Q ss_pred HHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 282 TAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 282 ~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
.+.+.+........|+|.|++|+|||..++.+.+++..
T Consensus 27 ~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~ 64 (226)
T TIGR03420 27 AALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEE 64 (226)
T ss_pred HHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 44455544567889999999999999999999988764
No 71
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=90.81 E-value=0.16 Score=52.22 Aligned_cols=23 Identities=48% Similarity=0.616 Sum_probs=20.8
Q ss_pred EEEEcCCCCCChhhHHHHHHHHH
Q 001346 295 SIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il~yL 317 (1095)
-|+|+|++|||||+.++.+.+.|
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999998765
No 72
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=90.77 E-value=0.18 Score=50.28 Aligned_cols=22 Identities=41% Similarity=0.650 Sum_probs=20.3
Q ss_pred EEEcCCCCCChhhHHHHHHHHH
Q 001346 296 IIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 296 IiisGESGAGKTe~~K~il~yL 317 (1095)
|+|+|.+|||||+.++.+...+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998765
No 73
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=90.72 E-value=29 Score=39.70 Aligned_cols=57 Identities=19% Similarity=0.255 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhhhh
Q 001346 1017 TLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEE----MWQKQMASLQVSFTCFYTDIIM 1073 (1095)
Q Consensus 1017 ~l~~leeE~~~Lkeel~~~e~~~~e~e~k~~~~ee----~~~k~~~~Lq~~l~~~kksla~ 1073 (1095)
.+..++.+...++..++++..+..++|..++..++ .+.++|+.|...-...+..+..
T Consensus 143 ~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 143 KIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQ 203 (310)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 33344444444555566666666666665555433 3677777777776666666654
No 74
>PRK06547 hypothetical protein; Provisional
Probab=90.61 E-value=0.35 Score=50.70 Aligned_cols=28 Identities=32% Similarity=0.392 Sum_probs=24.5
Q ss_pred CCCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 290 DGVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 290 ~~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
.....-|+|+|.||||||+.++.+.+.+
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 5677899999999999999999987764
No 75
>PTZ00301 uridine kinase; Provisional
Probab=90.59 E-value=0.19 Score=54.49 Aligned_cols=24 Identities=38% Similarity=0.433 Sum_probs=20.6
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHH
Q 001346 295 SIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il~yLa 318 (1095)
-|-|+|.||||||+.++.|.+.|.
T Consensus 5 iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 5 VIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred EEEEECCCcCCHHHHHHHHHHHHH
Confidence 367999999999999998887664
No 76
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=90.38 E-value=0.2 Score=52.72 Aligned_cols=24 Identities=42% Similarity=0.444 Sum_probs=22.0
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHH
Q 001346 296 IIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 296 IiisGESGAGKTe~~K~il~yLa~ 319 (1095)
|.|+|.||||||+.++.+...|..
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999988864
No 77
>PRK07261 topology modulation protein; Provisional
Probab=90.33 E-value=0.2 Score=52.40 Aligned_cols=22 Identities=41% Similarity=0.439 Sum_probs=19.2
Q ss_pred EEEEcCCCCCChhhHHHHHHHH
Q 001346 295 SIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il~y 316 (1095)
-|+|.|.||||||+.++.+.+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999987544
No 78
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=90.26 E-value=0.2 Score=54.59 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=21.1
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHH
Q 001346 296 IIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 296 IiisGESGAGKTe~~K~il~yLa~ 319 (1095)
|-|+|.||||||+.++.|...|..
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhh
Confidence 568999999999999999888764
No 79
>PRK00131 aroK shikimate kinase; Reviewed
Probab=90.18 E-value=0.24 Score=50.89 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=23.6
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
....|+|.|.+|||||+.++.+-+.|
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998876
No 80
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=90.05 E-value=0.24 Score=51.66 Aligned_cols=25 Identities=36% Similarity=0.497 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
.+-|+++|-||||||+.+|.+.+-+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3579999999999999999887654
No 81
>PRK08118 topology modulation protein; Reviewed
Probab=89.94 E-value=0.24 Score=51.59 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=21.8
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 294 QSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
+-|+|.|.+|||||+.++.+-+.+-
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999999987654
No 82
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=89.94 E-value=0.26 Score=51.63 Aligned_cols=24 Identities=42% Similarity=0.598 Sum_probs=22.7
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHH
Q 001346 295 SIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il~yLa 318 (1095)
++++.|.||.|||++++.+-++|-
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~ 28 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLF 28 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999999987
No 83
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=89.93 E-value=0.4 Score=57.28 Aligned_cols=42 Identities=21% Similarity=0.287 Sum_probs=34.3
Q ss_pred chhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 275 HVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 275 HiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
.++.+.-+|...++.-.+.|.+.|.|.||+|||+..+.|+.+
T Consensus 137 ~~l~TGi~aID~ll~I~~GQ~igI~G~sGaGKSTLl~~I~g~ 178 (434)
T PRK07196 137 TPLDVGVNAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRY 178 (434)
T ss_pred cccccceeeccceEeEecceEEEEECCCCCCccHHHHHHhcc
Confidence 345566678888877788999999999999999998877654
No 84
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=89.93 E-value=0.21 Score=52.88 Aligned_cols=26 Identities=31% Similarity=0.622 Sum_probs=23.0
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
...|+|+|++|||||++.+.++.++-
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 46799999999999999999888764
No 85
>PRK08084 DNA replication initiation factor; Provisional
Probab=89.87 E-value=0.46 Score=52.27 Aligned_cols=40 Identities=18% Similarity=0.168 Sum_probs=31.2
Q ss_pred HHHHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 280 ADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 280 A~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
|-.+.+.+.......+++|.|++|+|||+.+..+.+++..
T Consensus 32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~ 71 (235)
T PRK08084 32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQ 71 (235)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4455555555556679999999999999999988887764
No 86
>PF12846 AAA_10: AAA-like domain
Probab=89.85 E-value=0.26 Score=55.15 Aligned_cols=30 Identities=33% Similarity=0.460 Sum_probs=26.3
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHHhcC
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yLa~~~~ 322 (1095)
|..++|.|.||||||++++.++..++..+.
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g~ 30 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRGP 30 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcCC
Confidence 456899999999999999999998887663
No 87
>PF13245 AAA_19: Part of AAA domain
Probab=89.84 E-value=0.37 Score=43.62 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=24.0
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
.+...+|.|..|||||++...++.++..
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~~ 36 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELLA 36 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4667788999999999999888888885
No 88
>PF05729 NACHT: NACHT domain
Probab=89.79 E-value=0.27 Score=49.73 Aligned_cols=27 Identities=37% Similarity=0.427 Sum_probs=23.8
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001346 295 SIIISGESGAGKTETAKFAMQYLAALG 321 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il~yLa~~~ 321 (1095)
-++|+|+.|+|||+.++.++..++...
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 489999999999999999998888644
No 89
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=89.50 E-value=0.35 Score=56.33 Aligned_cols=37 Identities=27% Similarity=0.508 Sum_probs=30.1
Q ss_pred HHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 283 AYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 283 Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
+++.......+.+++|+|++|+|||.+++.+++.|..
T Consensus 30 ~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 30 ALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred HHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3444445677889999999999999999999988754
No 90
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=89.47 E-value=5.8 Score=42.56 Aligned_cols=53 Identities=25% Similarity=0.317 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001346 999 ALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEE 1051 (1095)
Q Consensus 999 ~l~~~l~elq~~~~eae~~l~~leeE~~~Lkeel~~~e~~~~e~e~k~~~~ee 1051 (1095)
+++.+.++.+.++...+.+..+++++...|-.+...++.+|.+++.+.+..++
T Consensus 160 ele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~e~ 212 (290)
T COG4026 160 ELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPEE 212 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccchHH
Confidence 33333344444333333333334444443433444444444444444444333
No 91
>PRK00889 adenylylsulfate kinase; Provisional
Probab=89.38 E-value=0.41 Score=49.84 Aligned_cols=29 Identities=31% Similarity=0.363 Sum_probs=25.7
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
....|+|.|.+|||||+.++.+..+|...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~ 31 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREA 31 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45689999999999999999999999753
No 92
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=89.34 E-value=0.24 Score=55.62 Aligned_cols=20 Identities=40% Similarity=0.617 Sum_probs=17.8
Q ss_pred eEEEEcCCCCCChhhHHHHH
Q 001346 294 QSIIISGESGAGKTETAKFA 313 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~i 313 (1095)
+-|||||-||||||++.+.+
T Consensus 2 ~~vIiTGlSGaGKs~Al~~l 21 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRAL 21 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHH
Confidence 56999999999999988776
No 93
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=89.30 E-value=0.25 Score=57.52 Aligned_cols=35 Identities=23% Similarity=0.460 Sum_probs=26.9
Q ss_pred HHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 284 YNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 284 y~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
+..+.. .....|+|+|++|||||++.+.++.++..
T Consensus 114 l~~~~~-~~~g~ili~G~tGSGKTT~l~al~~~i~~ 148 (343)
T TIGR01420 114 LRELAE-RPRGLILVTGPTGSGKSTTLASMIDYINK 148 (343)
T ss_pred HHHHHh-hcCcEEEEECCCCCCHHHHHHHHHHhhCc
Confidence 344442 23578999999999999999999888653
No 94
>PRK14737 gmk guanylate kinase; Provisional
Probab=89.25 E-value=0.25 Score=52.47 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
.--|||+|.||||||+.++.+++.+
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 4569999999999999999887753
No 95
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=89.24 E-value=0.22 Score=52.56 Aligned_cols=23 Identities=30% Similarity=0.317 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCChhhHHHHHHHH
Q 001346 294 QSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~y 316 (1095)
+.|+|+|.||||||+..+.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 57999999999999999888443
No 96
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=89.10 E-value=0.3 Score=46.91 Aligned_cols=24 Identities=38% Similarity=0.382 Sum_probs=21.8
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHH
Q 001346 296 IIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 296 IiisGESGAGKTe~~K~il~yLa~ 319 (1095)
|.|.|++|.|||..++.+.++|..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999888775
No 97
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=89.08 E-value=0.22 Score=51.08 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.3
Q ss_pred EEEcCCCCCChhhHHHHHHHHHH
Q 001346 296 IIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 296 IiisGESGAGKTe~~K~il~yLa 318 (1095)
|+|.|.||||||+.++.+-+.|-
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 68999999999999999888763
No 98
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=89.05 E-value=0.29 Score=55.91 Aligned_cols=34 Identities=26% Similarity=0.400 Sum_probs=27.4
Q ss_pred HHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 284 YNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 284 y~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
...+++.+ ..|+|+|.+|||||+..+.++.++..
T Consensus 125 L~~~v~~~--~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 125 LREAVLAR--KNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred HHHHHHcC--CeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 34444433 57999999999999999999999875
No 99
>PRK10884 SH3 domain-containing protein; Provisional
Probab=89.01 E-value=2.1 Score=46.34 Aligned_cols=53 Identities=21% Similarity=0.261 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001346 1000 LPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEM 1052 (1095)
Q Consensus 1000 l~~~l~elq~~~~eae~~l~~leeE~~~Lkeel~~~e~~~~e~e~k~~~~ee~ 1052 (1095)
......+++..+.+.+..+.+++++|++|+++++....+...++.+...++..
T Consensus 116 ~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 116 WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666677777788888888888888777777666666655544
No 100
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=88.96 E-value=0.24 Score=49.81 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=19.8
Q ss_pred EEEcCCCCCChhhHHHHHHHHH
Q 001346 296 IIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 296 IiisGESGAGKTe~~K~il~yL 317 (1095)
|+|.|.||||||+.++.+++.+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 7899999999999999888765
No 101
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=88.93 E-value=0.33 Score=56.55 Aligned_cols=26 Identities=23% Similarity=0.511 Sum_probs=22.9
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
...|+|+|.+|||||+..+.++.++-
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcccC
Confidence 45699999999999999999988764
No 102
>PRK14738 gmk guanylate kinase; Provisional
Probab=88.92 E-value=0.31 Score=52.54 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
....-|||+|.||||||+.++.+++.
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 45788999999999999988777654
No 103
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=88.89 E-value=0.27 Score=52.29 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=19.3
Q ss_pred EEEcCCCCCChhhHHHHHHHHH
Q 001346 296 IIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 296 IiisGESGAGKTe~~K~il~yL 317 (1095)
|.|+|-||||||+.++.+.+.|
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999998886653
No 104
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.78 E-value=0.55 Score=55.15 Aligned_cols=53 Identities=19% Similarity=0.394 Sum_probs=38.3
Q ss_pred HHHHcccCCC----CCchhHHHHHHHHHHhh-CCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 263 ITAYRQKVMD----SPHVYAIADTAYNEMMG-DGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 263 ~~~y~~~~~~----~PHiyavA~~Ay~~m~~-~~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
.++|+-...+ .+|+-.. +.++.. .+-+++++++|+.|+|||+.++.+.+.|-+
T Consensus 7 ~~kyrP~~~~~iiGq~~~~~~----l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 7 ARKWRPQYFRDIIGQKHIVTA----ISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred HHHhCCCchhhccChHHHHHH----HHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 4566655443 4676543 444444 456899999999999999999999988853
No 105
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=88.60 E-value=0.34 Score=49.38 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=22.0
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHH
Q 001346 296 IIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 296 IiisGESGAGKTe~~K~il~yLa~ 319 (1095)
|+|+|.||||||+.++.+..++..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999998864
No 106
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=88.53 E-value=0.34 Score=50.65 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=21.3
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHH
Q 001346 296 IIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 296 IiisGESGAGKTe~~K~il~yLa~ 319 (1095)
|+|+|++|+|||+..+.++++|..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 899999999999999999998864
No 107
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=88.53 E-value=0.31 Score=57.03 Aligned_cols=29 Identities=24% Similarity=0.389 Sum_probs=25.8
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
...-|+|+|++|||||++.+.++.++...
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~~~ 161 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELAEA 161 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 46789999999999999999999998653
No 108
>PRK03846 adenylylsulfate kinase; Provisional
Probab=88.48 E-value=0.6 Score=49.84 Aligned_cols=33 Identities=27% Similarity=0.315 Sum_probs=28.0
Q ss_pred hCCCceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001346 289 GDGVNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1095)
Q Consensus 289 ~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~ 321 (1095)
...+...|+|+|.||||||+.++.+...|...+
T Consensus 20 ~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~ 52 (198)
T PRK03846 20 HGHKGVVLWFTGLSGSGKSTVAGALEEALHELG 52 (198)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 345678999999999999999999999886543
No 109
>PRK06217 hypothetical protein; Validated
Probab=88.42 E-value=0.31 Score=51.31 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=20.4
Q ss_pred EEEEcCCCCCChhhHHHHHHHHH
Q 001346 295 SIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il~yL 317 (1095)
-|+|+|-||||||+.++.+-+.|
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 39999999999999999887655
No 110
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=88.38 E-value=0.44 Score=55.29 Aligned_cols=31 Identities=29% Similarity=0.402 Sum_probs=24.8
Q ss_pred HHhhCCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 286 EMMGDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 286 ~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
.+++.+ ..|+|+|++|||||+..+.++.++.
T Consensus 155 ~~v~~~--~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 155 HAVISK--KNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred HHHHcC--CcEEEECCCCCCHHHHHHHHHhhCC
Confidence 344444 4599999999999999999888764
No 111
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=88.38 E-value=0.41 Score=48.02 Aligned_cols=25 Identities=32% Similarity=0.399 Sum_probs=22.8
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 296 IIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 296 IiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
++|+|++|+|||+.++.++..++..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~ 26 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATK 26 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhc
Confidence 6899999999999999999988764
No 112
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=88.35 E-value=0.27 Score=54.93 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=24.7
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
....|+|+|+.|||||++.+.++.++-.
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~ 153 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPP 153 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHT
T ss_pred cceEEEEECCCccccchHHHHHhhhccc
Confidence 4688999999999999999999888664
No 113
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=88.31 E-value=0.6 Score=53.11 Aligned_cols=31 Identities=26% Similarity=0.348 Sum_probs=25.1
Q ss_pred CCCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 290 DGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 290 ~~~~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
.+.+.-|-|+|.||||||++++.+...|...
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~ 89 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRW 89 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 3556778899999999999999887766543
No 114
>PRK12377 putative replication protein; Provisional
Probab=88.25 E-value=0.7 Score=51.39 Aligned_cols=46 Identities=26% Similarity=0.301 Sum_probs=34.2
Q ss_pred CchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001346 274 PHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1095)
Q Consensus 274 PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~ 321 (1095)
-|+++.|..-...... ..++|+|+|.+|+|||+.+..|.++|..-+
T Consensus 84 ~~a~~~a~~~a~~~~~--~~~~l~l~G~~GtGKThLa~AIa~~l~~~g 129 (248)
T PRK12377 84 RYALSQAKSIADELMT--GCTNFVFSGKPGTGKNHLAAAIGNRLLAKG 129 (248)
T ss_pred HHHHHHHHHHHHHHHh--cCCeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3456655554444432 357999999999999999999999998643
No 115
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=88.14 E-value=0.39 Score=50.44 Aligned_cols=28 Identities=36% Similarity=0.361 Sum_probs=24.5
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001346 294 QSIIISGESGAGKTETAKFAMQYLAALG 321 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~yLa~~~ 321 (1095)
--|.|+|.||||||+..+.++..|...+
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~~l~~~g 34 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIPALCARG 34 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHhhcC
Confidence 3688999999999999999999997643
No 116
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=88.11 E-value=0.35 Score=56.87 Aligned_cols=27 Identities=30% Similarity=0.322 Sum_probs=24.3
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
+--|+|+|++|||||++.+.+++|+..
T Consensus 149 ~GlilI~G~TGSGKTT~l~al~~~i~~ 175 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLAASIYQHCGE 175 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 447999999999999999999999875
No 117
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=88.05 E-value=0.28 Score=48.79 Aligned_cols=23 Identities=39% Similarity=0.576 Sum_probs=20.4
Q ss_pred EEEcCCCCCChhhHHHHHHHHHH
Q 001346 296 IIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 296 IiisGESGAGKTe~~K~il~yLa 318 (1095)
|++.|.+|||||+.++.+.+.+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 89999999999999999876654
No 118
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=88.00 E-value=76 Score=39.05 Aligned_cols=29 Identities=17% Similarity=0.110 Sum_probs=16.8
Q ss_pred HHHHHH-hhCCCcccchhhHHHhhhcccccccc
Q 001346 805 EIVRIS-RSGYPTRMRHQEFAGRYGVLLSEKQL 836 (1095)
Q Consensus 805 e~vri~-r~Gyp~r~~~~eF~~RY~~L~~~~~~ 836 (1095)
|+++|. -.|||+-.+-. ..+.+-.|+.|+
T Consensus 129 EV~~ilK~L~YPf~~siS---s~~a~gspH~WP 158 (581)
T KOG0995|consen 129 EVVQILKNLKYPFLLSIS---SLQAAGSPHNWP 158 (581)
T ss_pred HHHHHHHhCCCCcccchh---hhccCCCCCccH
Confidence 345555 45888877766 344445555554
No 119
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=87.97 E-value=0.28 Score=51.12 Aligned_cols=24 Identities=38% Similarity=0.447 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHH
Q 001346 294 QSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~yL 317 (1095)
+-|+|.|.||||||+.++.+++.+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 569999999999999999988754
No 120
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=87.96 E-value=0.31 Score=53.71 Aligned_cols=24 Identities=33% Similarity=0.627 Sum_probs=19.1
Q ss_pred EEEEcCCCCCChhhHHHHH--HHHHH
Q 001346 295 SIIISGESGAGKTETAKFA--MQYLA 318 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~i--l~yLa 318 (1095)
-|||||-||||||.+.+.+ |-|+|
T Consensus 3 lvIVTGlSGAGKsvAl~~lEDlGyyc 28 (286)
T COG1660 3 LVIVTGLSGAGKSVALRVLEDLGYYC 28 (286)
T ss_pred EEEEecCCCCcHHHHHHHHHhcCeee
Confidence 4899999999999988766 33544
No 121
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=87.93 E-value=0.32 Score=53.66 Aligned_cols=26 Identities=31% Similarity=0.535 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 294 QSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
--+++-|.||||||++.|+|-+-+.-
T Consensus 28 ef~vliGpSGsGKTTtLkMINrLiep 53 (309)
T COG1125 28 EFLVLIGPSGSGKTTTLKMINRLIEP 53 (309)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCC
Confidence 34688999999999999999665543
No 122
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=87.70 E-value=11 Score=33.99 Aligned_cols=48 Identities=17% Similarity=0.270 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001346 1005 AELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEM 1052 (1095)
Q Consensus 1005 ~elq~~~~eae~~l~~leeE~~~Lkeel~~~e~~~~e~e~k~~~~ee~ 1052 (1095)
++|+.++..+-..+..++.|++.|+++...+.....+++.....+.++
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e 54 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQE 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444443333
No 123
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=87.66 E-value=0.91 Score=49.32 Aligned_cols=31 Identities=16% Similarity=0.235 Sum_probs=26.2
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yLa~~~ 321 (1095)
..+..++|.|++|+|||+.++.+.+.+...+
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~ 70 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASYGG 70 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 4568999999999999999999988776543
No 124
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=87.57 E-value=0.39 Score=48.42 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=21.6
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHH
Q 001346 295 SIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il~yLa 318 (1095)
+|++.|.+|||||+.+|.+-++|-
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999988763
No 125
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=87.50 E-value=0.46 Score=48.11 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=24.6
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001346 295 SIIISGESGAGKTETAKFAMQYLAALG 321 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il~yLa~~~ 321 (1095)
.|.|.|-+|||||+.++.++++|...+
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g 28 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRG 28 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcC
Confidence 478999999999999999999999755
No 126
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=87.36 E-value=0.44 Score=49.79 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=21.0
Q ss_pred EEEEcCCCCCChhhHHHHHHHHH
Q 001346 295 SIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il~yL 317 (1095)
.|+|.|.+|||||+.++.+.+++
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998775
No 127
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=87.24 E-value=0.65 Score=54.76 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=29.5
Q ss_pred HHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 284 YNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 284 y~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
+........+.+++|+|.+|+|||.+++.+++.+..
T Consensus 46 l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~ 81 (394)
T PRK00411 46 LRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEE 81 (394)
T ss_pred HHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 334445667789999999999999999999988754
No 128
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=87.05 E-value=0.81 Score=52.05 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=28.1
Q ss_pred HHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 282 TAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 282 ~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
...+.....+..-.++|+|+.|+|||+.++.+.+.+.
T Consensus 27 ~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 27 ERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 3444555555444689999999999999999988774
No 129
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=86.94 E-value=0.46 Score=51.51 Aligned_cols=23 Identities=48% Similarity=0.524 Sum_probs=19.7
Q ss_pred EEEcCCCCCChhhHHHHHHHHHH
Q 001346 296 IIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 296 IiisGESGAGKTe~~K~il~yLa 318 (1095)
|-|+|-||||||+.++.+..-|-
T Consensus 11 IgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 11 IGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred EEEeCCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999887765
No 130
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=86.91 E-value=0.86 Score=47.77 Aligned_cols=43 Identities=23% Similarity=0.293 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001346 278 AIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1095)
Q Consensus 278 avA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~ 321 (1095)
++...+...| ...+.-.|-++|-||||||+.+..+-+.|-..|
T Consensus 9 ~v~~~~r~~~-~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G 51 (197)
T COG0529 9 SVTKQEREAL-KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKG 51 (197)
T ss_pred ccCHHHHHHH-hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcC
Confidence 3433333333 345578999999999999999999999988765
No 131
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=86.89 E-value=0.49 Score=48.84 Aligned_cols=23 Identities=43% Similarity=0.537 Sum_probs=21.3
Q ss_pred EEEcCCCCCChhhHHHHHHHHHH
Q 001346 296 IIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 296 IiisGESGAGKTe~~K~il~yLa 318 (1095)
|.|||.+|||||+.++.+-.+|-
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhC
Confidence 88999999999999999988875
No 132
>PRK07667 uridine kinase; Provisional
Probab=86.84 E-value=0.94 Score=48.24 Aligned_cols=27 Identities=22% Similarity=0.104 Sum_probs=23.5
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 294 QSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
--|-|+|-||||||+.++.+.+.|...
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 467899999999999999999988753
No 133
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=86.79 E-value=0.44 Score=48.13 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=18.8
Q ss_pred EEEcCCCCCChhhHHHHHHHH
Q 001346 296 IIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 296 IiisGESGAGKTe~~K~il~y 316 (1095)
|+|+|.+|||||+.++.+.+-
T Consensus 2 i~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhh
Confidence 789999999999999988664
No 134
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=86.78 E-value=0.65 Score=53.07 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=26.1
Q ss_pred HHHHHhh-CCCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 283 AYNEMMG-DGVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 283 Ay~~m~~-~~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
....... .+-+..++++|++|+|||+.++.+.+.+
T Consensus 32 ~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 32 TFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred HHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 3344333 3446788889999999999999997765
No 135
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=86.71 E-value=0.79 Score=52.61 Aligned_cols=33 Identities=18% Similarity=0.305 Sum_probs=26.4
Q ss_pred HhhCCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 287 MMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 287 m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
+...+....++|+|++|+|||+.++.+.+++..
T Consensus 30 ~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~ 62 (337)
T PRK12402 30 AVDSPNLPHLLVQGPPGSGKTAAVRALARELYG 62 (337)
T ss_pred HHhCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 334444457999999999999999999888763
No 136
>PRK04182 cytidylate kinase; Provisional
Probab=86.67 E-value=0.45 Score=49.23 Aligned_cols=23 Identities=43% Similarity=0.624 Sum_probs=20.5
Q ss_pred EEEEcCCCCCChhhHHHHHHHHH
Q 001346 295 SIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il~yL 317 (1095)
-|+|+|.+|||||+.++.+-+.|
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999997654
No 137
>PRK13764 ATPase; Provisional
Probab=86.57 E-value=0.59 Score=58.09 Aligned_cols=27 Identities=33% Similarity=0.585 Sum_probs=23.8
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
...|+|+|.+|||||++++.++.|+..
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~ 283 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYAD 283 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345999999999999999999998864
No 138
>PRK08727 hypothetical protein; Validated
Probab=86.54 E-value=0.97 Score=49.66 Aligned_cols=32 Identities=25% Similarity=0.283 Sum_probs=26.7
Q ss_pred CCCceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001346 290 DGVNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1095)
Q Consensus 290 ~~~~QsIiisGESGAGKTe~~K~il~yLa~~~ 321 (1095)
....+.|+|.|.||+|||+.+..+...+...+
T Consensus 38 ~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~ 69 (233)
T PRK08727 38 GQSSDWLYLSGPAGTGKTHLALALCAAAEQAG 69 (233)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 44567899999999999999999988877643
No 139
>PRK06893 DNA replication initiation factor; Validated
Probab=86.36 E-value=1.2 Score=48.80 Aligned_cols=46 Identities=15% Similarity=0.086 Sum_probs=32.6
Q ss_pred CchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001346 274 PHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1095)
Q Consensus 274 PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~ 321 (1095)
+|.. .+..+.+.+ ....+.+++|.|.||+|||+.+..+-+.++..+
T Consensus 22 ~~~~-~~~~~~~~~-~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~ 67 (229)
T PRK06893 22 NNLL-LLDSLRKNF-IDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQ 67 (229)
T ss_pred ChHH-HHHHHHHHh-hccCCCeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 4543 333333333 345667899999999999999999988876543
No 140
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=86.33 E-value=0.46 Score=52.96 Aligned_cols=32 Identities=22% Similarity=0.413 Sum_probs=26.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHHhcC
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yLa~~~~ 322 (1095)
.+..++-|-||||+|||++.|.++.-+--.+|
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G 68 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEPTSG 68 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCCCCc
Confidence 45678889999999999999999987765444
No 141
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=86.21 E-value=0.54 Score=49.62 Aligned_cols=22 Identities=45% Similarity=0.575 Sum_probs=20.4
Q ss_pred EEEcCCCCCChhhHHHHHHHHH
Q 001346 296 IIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 296 IiisGESGAGKTe~~K~il~yL 317 (1095)
|+|.|.||||||+-++.+.+.+
T Consensus 3 iiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998873
No 142
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=86.20 E-value=0.63 Score=56.78 Aligned_cols=35 Identities=26% Similarity=0.472 Sum_probs=26.5
Q ss_pred HHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 283 AYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 283 Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
.+..+... ..--|+|+|++|||||++...++.++.
T Consensus 233 ~l~~~~~~-~~GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 233 RFERLIRR-PHGIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred HHHHHHhc-CCCEEEEEcCCCCCHHHHHHHHHhccC
Confidence 44555532 334689999999999999998888764
No 143
>PRK14527 adenylate kinase; Provisional
Probab=86.16 E-value=0.61 Score=49.41 Aligned_cols=28 Identities=36% Similarity=0.413 Sum_probs=24.2
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
.+.+-|+|.|.+|||||+.++.+.+.+.
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4568899999999999999999877664
No 144
>PRK04040 adenylate kinase; Provisional
Probab=86.00 E-value=0.62 Score=49.57 Aligned_cols=25 Identities=28% Similarity=0.534 Sum_probs=22.7
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 294 QSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
.-|+|+|.+|||||+.++.+.+.|.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5699999999999999999988883
No 145
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=85.99 E-value=0.58 Score=48.94 Aligned_cols=25 Identities=32% Similarity=0.508 Sum_probs=22.1
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
++.|+|.|.+|||||+.++.+.+.|
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 5679999999999999999987765
No 146
>PHA00729 NTP-binding motif containing protein
Probab=85.62 E-value=1.2 Score=48.89 Aligned_cols=38 Identities=24% Similarity=0.183 Sum_probs=28.1
Q ss_pred HHHHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 280 ADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 280 A~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
|....+.+... .-..|+|+|.+|+|||+.+..+.+.+.
T Consensus 5 ~k~~~~~l~~~-~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 5 AKKIVSAYNNN-GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred HHHHHHHHhcC-CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34444444333 346899999999999999999988764
No 147
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=85.58 E-value=0.77 Score=47.65 Aligned_cols=27 Identities=41% Similarity=0.540 Sum_probs=23.9
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001346 295 SIIISGESGAGKTETAKFAMQYLAALG 321 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il~yLa~~~ 321 (1095)
.|++.|++|+|||+.+..+...++..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g 28 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKG 28 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 488999999999999999999888654
No 148
>PRK12608 transcription termination factor Rho; Provisional
Probab=85.56 E-value=0.7 Score=54.15 Aligned_cols=42 Identities=21% Similarity=0.119 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 278 AIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 278 avA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
.+..++...|.--++-|-++|.|++|+|||+.++.+.+.+..
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 577788888888788999999999999999999999888765
No 149
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.46 E-value=0.94 Score=55.13 Aligned_cols=56 Identities=27% Similarity=0.373 Sum_probs=39.0
Q ss_pred HHHHcccCCC----CCchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001346 263 ITAYRQKVMD----SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1095)
Q Consensus 263 ~~~y~~~~~~----~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~ 321 (1095)
..+|+-+... .+|+-..-..|+ ..++-+|+++++|..|.|||++++++-+.|-+..
T Consensus 4 a~KyRP~~f~dliGQe~vv~~L~~a~---~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~ 63 (491)
T PRK14964 4 ALKYRPSSFKDLVGQDVLVRILRNAF---TLNKIPQSILLVGASGVGKTTCARIISLCLNCSN 63 (491)
T ss_pred hHHhCCCCHHHhcCcHHHHHHHHHHH---HcCCCCceEEEECCCCccHHHHHHHHHHHHcCcC
Confidence 3456554443 467654333332 2456789999999999999999999988886543
No 150
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=85.45 E-value=0.7 Score=51.79 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=21.1
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHH
Q 001346 296 IIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 296 IiisGESGAGKTe~~K~il~yLa~ 319 (1095)
|.|+|-||||||+.++.+.+.|..
T Consensus 2 IgItG~SGSGKTTv~~~l~~~l~~ 25 (277)
T cd02029 2 IAVTGSSGAGTTTVKRAFEHIFAR 25 (277)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 789999999999999988877754
No 151
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=85.34 E-value=0.67 Score=48.73 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=22.7
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
...|+|.|.||||||+.++.+...+.
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999988664
No 152
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=84.86 E-value=0.66 Score=53.51 Aligned_cols=27 Identities=22% Similarity=0.470 Sum_probs=23.6
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
...|+|+|.+|||||+..+.++.++..
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~ 174 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVI 174 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhh
Confidence 467999999999999999999987653
No 153
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.82 E-value=0.99 Score=54.60 Aligned_cols=53 Identities=19% Similarity=0.317 Sum_probs=38.2
Q ss_pred HHHcccCCC----CCchhHHHHHHHHHHhhC-CCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 264 TAYRQKVMD----SPHVYAIADTAYNEMMGD-GVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 264 ~~y~~~~~~----~PHiyavA~~Ay~~m~~~-~~~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
+.|+-+... ..|+... .+.+... +..+++|++|+.|.|||++++.+.++|-+.
T Consensus 10 ~KyRP~~f~dvVGQe~iv~~----L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 10 RKYRPQFFRDVIHQDLAIGA----LQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred HHhCCCCHHHHhChHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 456544433 4777653 4444444 457899999999999999999999988753
No 154
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=84.81 E-value=0.67 Score=48.39 Aligned_cols=23 Identities=17% Similarity=0.407 Sum_probs=20.7
Q ss_pred EEEcCCCCCChhhHHHHHHHHHH
Q 001346 296 IIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 296 IiisGESGAGKTe~~K~il~yLa 318 (1095)
|+|.|.+|||||+.++.+.+.+-
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999988764
No 155
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.79 E-value=7.9 Score=43.25 Aligned_cols=68 Identities=10% Similarity=0.288 Sum_probs=48.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001346 995 EQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQV 1062 (1095)
Q Consensus 995 e~~~~l~~~l~elq~~~~eae~~l~~leeE~~~Lkeel~~~e~~~~e~e~k~~~~ee~~~k~~~~Lq~ 1062 (1095)
.+...++.+++.|..++.+...++.+.++++.+++.++..++.++.+++..+.+..+.+.++.+.++.
T Consensus 45 ~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~ 112 (265)
T COG3883 45 KEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQV 112 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666777777777777777777777777777777777777777777777777776666665544
No 156
>PRK00698 tmk thymidylate kinase; Validated
Probab=84.77 E-value=0.94 Score=48.03 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=24.3
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
+-.|+|.|.+|||||+.++.+-++|...
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~ 30 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQ 30 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4579999999999999999999888543
No 157
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=84.76 E-value=0.83 Score=47.07 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=23.4
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHHhc
Q 001346 296 IIISGESGAGKTETAKFAMQYLAALG 321 (1095)
Q Consensus 296 IiisGESGAGKTe~~K~il~yLa~~~ 321 (1095)
|.|.|.+|||||+.+..++..|...+
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G 27 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARG 27 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 67899999999999999999998654
No 158
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=84.76 E-value=0.96 Score=48.38 Aligned_cols=49 Identities=22% Similarity=0.276 Sum_probs=32.7
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHHhcCCCcchHHHHHhh-----hHHHHHhccc
Q 001346 296 IIISGESGAGKTETAKFAMQYLAALGGGSEGIEYEILQT-----NHILEAFGNA 344 (1095)
Q Consensus 296 IiisGESGAGKTe~~K~il~yLa~~~~~~~~ie~~il~s-----npiLEAFGNA 344 (1095)
|.|+|..|||||+.++++-+.+-..-=+.+.+-..++.. ..+.+.||..
T Consensus 4 i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~ 57 (195)
T PRK14730 4 IGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNK 57 (195)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHH
Confidence 889999999999999988765321111233555555542 4577888874
No 159
>PRK11637 AmiB activator; Provisional
Probab=84.74 E-value=8.7 Score=46.19 Aligned_cols=61 Identities=20% Similarity=0.218 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001346 1005 AELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQVSFT 1065 (1095)
Q Consensus 1005 ~elq~~~~eae~~l~~leeE~~~Lkeel~~~e~~~~e~e~k~~~~ee~~~k~~~~Lq~~l~ 1065 (1095)
.+++.++...+.++...+.++..++.++...+.++.+++.++...++.+.+....+...+.
T Consensus 71 ~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlr 131 (428)
T PRK11637 71 ASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLD 131 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333344444444444444444444443333333333333
No 160
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=84.72 E-value=0.97 Score=39.38 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=17.5
Q ss_pred EEEEcCCCCCChhhHHHHHHH
Q 001346 295 SIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il~ 315 (1095)
..+|+|++|||||+..-.+.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999988766543
No 161
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=84.70 E-value=0.42 Score=49.59 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
+++.+++.|.||+|||+....++..
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3589999999999999988877654
No 162
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=84.57 E-value=18 Score=32.55 Aligned_cols=49 Identities=20% Similarity=0.256 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001346 1000 LPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKS 1048 (1095)
Q Consensus 1000 l~~~l~elq~~~~eae~~l~~leeE~~~Lkeel~~~e~~~~e~e~k~~~ 1048 (1095)
+-..+..|+.++++.+.+...+.++++.|+++.+++..+...+..++..
T Consensus 16 aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~ 64 (72)
T PF06005_consen 16 AVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRS 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444445555555555444444444444333
No 163
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.48 E-value=61 Score=40.98 Aligned_cols=11 Identities=27% Similarity=0.486 Sum_probs=5.4
Q ss_pred HHHHHHHhcCc
Q 001346 463 MLAAVLWLGNI 473 (1095)
Q Consensus 463 iLaAILhLGni 473 (1095)
|||-|..|.++
T Consensus 50 VLaqIWALsDl 60 (1118)
T KOG1029|consen 50 VLAQIWALSDL 60 (1118)
T ss_pred HHHHHHHhhhc
Confidence 44555555444
No 164
>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller [].; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 2QMH_C 1KKM_B 1KKL_C 1JB1_A 3TQF_B 1KNX_B 1KO7_A.
Probab=84.46 E-value=0.67 Score=48.38 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCCChhhHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~ 315 (1095)
...|+|.|+||+||||++=.+++
T Consensus 18 G~GVLi~G~SG~GKS~lAl~Li~ 40 (171)
T PF07475_consen 18 GVGVLITGPSGIGKSELALELIK 40 (171)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999887765
No 165
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=84.43 E-value=0.72 Score=50.65 Aligned_cols=29 Identities=28% Similarity=0.385 Sum_probs=24.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
.+..++=|.||||||||+.++.++-+..-
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p 59 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLEKP 59 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcccCC
Confidence 45688899999999999999998776554
No 166
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=84.43 E-value=0.89 Score=51.50 Aligned_cols=45 Identities=20% Similarity=0.200 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHHhhC--------CCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 276 VYAIADTAYNEMMGD--------GVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 276 iyavA~~Ay~~m~~~--------~~~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
++.....+...++.. .+...|+|.|.+|+|||+++..+..|++..
T Consensus 169 ~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 169 AWRWLREALEKMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred HHHHHHHHHHHHhccCCccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 444455555555531 245689999999999999999999998764
No 167
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=84.35 E-value=0.67 Score=52.67 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=19.3
Q ss_pred ceEEEEcCCCCCChhhHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFA 313 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~i 313 (1095)
.+-|+|+|.||||||+.++.+
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l 26 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRAL 26 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHH
Confidence 468999999999999999988
No 168
>PRK06761 hypothetical protein; Provisional
Probab=84.32 E-value=0.66 Score=52.49 Aligned_cols=26 Identities=42% Similarity=0.548 Sum_probs=23.5
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 294 QSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
.-|+|+|.+|||||+.++.+.++|..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 46999999999999999999998864
No 169
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=84.25 E-value=0.78 Score=45.51 Aligned_cols=27 Identities=33% Similarity=0.426 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
+....|+++|+=|||||+-+|.+.+.|
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 556899999999999999999888776
No 170
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=84.21 E-value=12 Score=44.18 Aligned_cols=70 Identities=21% Similarity=0.284 Sum_probs=44.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001346 996 QVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQVSFT 1065 (1095)
Q Consensus 996 ~~~~l~~~l~elq~~~~eae~~l~~leeE~~~Lkeel~~~e~~~~e~e~k~~~~ee~~~k~~~~Lq~~l~ 1065 (1095)
+.+.+...+.+++.++.+...++...+|++..|.+.+..-..+..+++.+.++.....+.++.+|+.++.
T Consensus 376 ~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlr 445 (493)
T KOG0804|consen 376 EKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLR 445 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556666666666666666777777777777666666666666666655555566666666554
No 171
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=84.19 E-value=1.2 Score=54.48 Aligned_cols=45 Identities=16% Similarity=0.325 Sum_probs=33.8
Q ss_pred CCchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 273 SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 273 ~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
.+|+...-..| +..++..|+++++|+.|.|||++++++.+.|-+.
T Consensus 26 q~~vv~~L~~a---i~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 26 QEVLVKVLSYT---ILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred cHHHHHHHHHH---HHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 36655433332 2345668999999999999999999999988653
No 172
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=84.04 E-value=0.75 Score=45.79 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=20.1
Q ss_pred EEEcCCCCCChhhHHHHHHHHH
Q 001346 296 IIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 296 IiisGESGAGKTe~~K~il~yL 317 (1095)
|++.|++|+|||+.++.+.+-+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7999999999999999888777
No 173
>PRK14974 cell division protein FtsY; Provisional
Probab=84.02 E-value=1.7 Score=50.54 Aligned_cols=31 Identities=35% Similarity=0.459 Sum_probs=27.2
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yLa~~~ 321 (1095)
+++..|++.|..|+|||+++..+..+|...+
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g 168 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNG 168 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 4578999999999999999999999887643
No 174
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=83.97 E-value=1.7 Score=47.32 Aligned_cols=43 Identities=19% Similarity=0.179 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhCC--CceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001346 279 IADTAYNEMMGDG--VNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1095)
Q Consensus 279 vA~~Ay~~m~~~~--~~QsIiisGESGAGKTe~~K~il~yLa~~~ 321 (1095)
.|-.|...+.... .-..++|.|+||+|||+..+.+..++....
T Consensus 18 ~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~ 62 (219)
T PF00308_consen 18 LAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQH 62 (219)
T ss_dssp HHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 3344555555443 235799999999999999888888877643
No 175
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=83.95 E-value=0.57 Score=54.63 Aligned_cols=28 Identities=32% Similarity=0.489 Sum_probs=24.6
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
--++-+.||||||||.|+..+|+-|..-
T Consensus 36 GEtlAlVGESGSGKSvTa~sim~LLp~~ 63 (534)
T COG4172 36 GETLALVGESGSGKSVTALSILGLLPSP 63 (534)
T ss_pred CCEEEEEecCCCCccHHHHHHHHhcCCC
Confidence 3567888999999999999999999863
No 176
>PRK08356 hypothetical protein; Provisional
Probab=83.93 E-value=0.68 Score=49.30 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCChhhHHHHHHH
Q 001346 294 QSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~ 315 (1095)
--|+|+|.+|||||+.++.+-+
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~ 27 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEE 27 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999988843
No 177
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=83.82 E-value=0.64 Score=54.25 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=26.4
Q ss_pred CCCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 290 DGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 290 ~~~~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
-++.|++=|.||||||||+.-..+++-+.+-
T Consensus 310 L~~gqTlGlVGESGSGKsTlG~allrL~~s~ 340 (534)
T COG4172 310 LRRGQTLGLVGESGSGKSTLGLALLRLIPSQ 340 (534)
T ss_pred ecCCCeEEEEecCCCCcchHHHHHHhhcCcC
Confidence 3578999999999999999999888776643
No 178
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=83.80 E-value=0.59 Score=56.92 Aligned_cols=29 Identities=34% Similarity=0.344 Sum_probs=25.7
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
.-+..=|-||||||||+++..+|.+|-.-
T Consensus 34 ~GE~lgIvGESGsGKSt~a~~i~gll~~~ 62 (539)
T COG1123 34 PGEILGIVGESGSGKSTLALALMGLLPEG 62 (539)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHhccCCCC
Confidence 45788899999999999999999998754
No 179
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=83.74 E-value=1.1 Score=55.91 Aligned_cols=37 Identities=24% Similarity=0.387 Sum_probs=30.3
Q ss_pred HHHHh-hCCCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 284 YNEMM-GDGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 284 y~~m~-~~~~~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
..+++ .++..|++|++|.+|.|||++++.+.+.|-+.
T Consensus 36 L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 36 LTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred HHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 44443 35568999999999999999999999988754
No 180
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=83.71 E-value=1.3 Score=46.51 Aligned_cols=29 Identities=28% Similarity=0.318 Sum_probs=25.3
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
...-.|+|+|.||||||+.++.+..+|..
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45568999999999999999999988864
No 181
>PRK08116 hypothetical protein; Validated
Probab=83.69 E-value=1.6 Score=49.02 Aligned_cols=48 Identities=25% Similarity=0.278 Sum_probs=34.2
Q ss_pred CchhHHHHHHHHHHhhC-CCceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001346 274 PHVYAIADTAYNEMMGD-GVNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1095)
Q Consensus 274 PHiyavA~~Ay~~m~~~-~~~QsIiisGESGAGKTe~~K~il~yLa~~~ 321 (1095)
.+.|+.|..--...... ..+..++|.|.+|+|||..+..|.++|...+
T Consensus 94 ~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~ 142 (268)
T PRK08116 94 EKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEKG 142 (268)
T ss_pred HHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 33555555444443322 3456799999999999999999999998653
No 182
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=83.59 E-value=0.88 Score=47.85 Aligned_cols=25 Identities=36% Similarity=0.570 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 294 QSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
.-|||+|.||||||+.++.+++-+-
T Consensus 3 r~ivl~Gpsg~GK~~l~~~L~~~~~ 27 (183)
T PF00625_consen 3 RPIVLVGPSGSGKSTLAKRLIQEFP 27 (183)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcc
Confidence 4699999999999999998887653
No 183
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=83.57 E-value=1.9 Score=44.16 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=25.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
..+=.|+++|+=|||||+-+|-+++.|..
T Consensus 23 ~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 23 KAGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred CCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 45678999999999999999999998874
No 184
>PRK15453 phosphoribulokinase; Provisional
Probab=83.54 E-value=0.91 Score=51.25 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=20.8
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
+.=-|.|+|-||||||+.++.+.+-|
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34569999999999999988776443
No 185
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=83.52 E-value=0.79 Score=53.08 Aligned_cols=27 Identities=30% Similarity=0.229 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.+.|.|+||||||+..+.|+..+
T Consensus 31 ~~Ge~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 31 TEGEIRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 467899999999999999999886543
No 186
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=83.49 E-value=0.79 Score=49.56 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...+.+.|.|+||||||+..|.++-.
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999998888644
No 187
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=83.49 E-value=0.61 Score=56.84 Aligned_cols=28 Identities=29% Similarity=0.472 Sum_probs=23.6
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
+-.++=|.||||||||+.+|.++..+.-
T Consensus 316 ~GE~lglVGeSGsGKSTlar~i~gL~~P 343 (539)
T COG1123 316 EGETLGLVGESGSGKSTLARILAGLLPP 343 (539)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4467778899999999999999887665
No 188
>PRK14528 adenylate kinase; Provisional
Probab=83.42 E-value=0.94 Score=47.97 Aligned_cols=24 Identities=42% Similarity=0.591 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHH
Q 001346 294 QSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~yL 317 (1095)
+-|+|.|.+|||||+.++.+-+.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 459999999999999999987765
No 189
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=83.40 E-value=0.82 Score=50.51 Aligned_cols=27 Identities=37% Similarity=0.527 Sum_probs=23.7
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
+=.|+|-|.||||||+..+.++.++..
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~~ 39 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLRH 39 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcc
Confidence 346899999999999999999998765
No 190
>PRK14531 adenylate kinase; Provisional
Probab=83.39 E-value=0.96 Score=47.65 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.7
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHH
Q 001346 294 QSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~yL 317 (1095)
|-|+|.|.+|||||+.++.+-+.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 569999999999999999997775
No 191
>PRK03839 putative kinase; Provisional
Probab=83.38 E-value=0.87 Score=47.60 Aligned_cols=23 Identities=39% Similarity=0.590 Sum_probs=20.3
Q ss_pred EEEEcCCCCCChhhHHHHHHHHH
Q 001346 295 SIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il~yL 317 (1095)
-|+|.|-+|||||+.++.+-+.|
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999987765
No 192
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.28 E-value=1.4 Score=54.34 Aligned_cols=55 Identities=20% Similarity=0.341 Sum_probs=38.7
Q ss_pred HHHHcccCCC----CCchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 263 ITAYRQKVMD----SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 263 ~~~y~~~~~~----~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
.++|+-.... .+|+...-..++. ..+-.+++|++|+.|+|||+.++.+.++|-+.
T Consensus 7 a~KyRP~~f~diiGq~~~v~~L~~~i~---~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~ 65 (546)
T PRK14957 7 ARKYRPQSFAEVAGQQHALNSLVHALE---TQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCK 65 (546)
T ss_pred HHHHCcCcHHHhcCcHHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3556554433 4777654333332 34567889999999999999999999998753
No 193
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=83.26 E-value=1.2 Score=40.40 Aligned_cols=26 Identities=38% Similarity=0.546 Sum_probs=23.5
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHHhc
Q 001346 296 IIISGESGAGKTETAKFAMQYLAALG 321 (1095)
Q Consensus 296 IiisGESGAGKTe~~K~il~yLa~~~ 321 (1095)
|+++|..|+|||+.+..+...|+..+
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g 27 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRG 27 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 78999999999999999999999743
No 194
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=83.25 E-value=0.87 Score=48.05 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=21.1
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~ 315 (1095)
...+.+.|.|++|||||+..+.+.-
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G 40 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNG 40 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3568899999999999998887753
No 195
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=83.25 E-value=1.2 Score=46.21 Aligned_cols=28 Identities=36% Similarity=0.385 Sum_probs=24.6
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001346 294 QSIIISGESGAGKTETAKFAMQYLAALG 321 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~yLa~~~ 321 (1095)
+.|.|.|.||||||+.++.++..|...+
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g 29 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARG 29 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 4688999999999999999999987654
No 196
>PRK13342 recombination factor protein RarA; Reviewed
Probab=83.24 E-value=1.2 Score=53.10 Aligned_cols=42 Identities=26% Similarity=0.383 Sum_probs=32.9
Q ss_pred CchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 274 PHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 274 PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
.|+... ....+.++..+...+|+|.|++|+|||+.++.+-+.
T Consensus 18 ~~~v~~-~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~ 59 (413)
T PRK13342 18 EHLLGP-GKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGA 59 (413)
T ss_pred HHHhCc-chHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 555443 355677777777889999999999999999988664
No 197
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=83.19 E-value=0.86 Score=48.96 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...+.+.|.|+||||||+..|.++-.
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999887644
No 198
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=83.11 E-value=0.83 Score=52.87 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.+.|.||||||||+..+.|+..+
T Consensus 39 ~~Ge~~~IvG~sGsGKSTLl~~l~gl~ 65 (327)
T PRK11308 39 ERGKTLAVVGESGCGKSTLARLLTMIE 65 (327)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 456899999999999999998886543
No 199
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=83.09 E-value=0.87 Score=49.06 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...+.+.|.|+||||||+..|.+.-.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999988887654
No 200
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=83.09 E-value=1.3 Score=54.41 Aligned_cols=113 Identities=27% Similarity=0.330 Sum_probs=62.3
Q ss_pred hhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHhcCCCcch-----HHHHH---hhhHHHHHhcccccC
Q 001346 276 VYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGGGSEGI-----EYEIL---QTNHILEAFGNAKTS 347 (1095)
Q Consensus 276 iyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~~~~~~i-----e~~il---~snpiLEAFGNAkT~ 347 (1095)
||++-+.-..- -+.||.|||.||+|||||+ .+-|||..-|-..+++ -.++. -|-.+-|-.|----.
T Consensus 357 vf~~R~~ll~~---ir~n~vvvivgETGSGKTT---Ql~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~ 430 (1042)
T KOG0924|consen 357 VFACRDQLLSV---IRENQVVVIVGETGSGKTT---QLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGD 430 (1042)
T ss_pred hHHHHHHHHHH---HhhCcEEEEEecCCCCchh---hhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCcccc
Confidence 66665554333 3679999999999999996 5678888765332211 11221 133344444221100
Q ss_pred CCCCCCcc----ccEEEEEEcCCCceeeeEeeeeecccccccc-ccCCCCcc
Q 001346 348 RNDNSSRF----GKLIEIHFSAFGKICGAKIQTFLLEKSRVVQ-LAAGERSY 394 (1095)
Q Consensus 348 rN~NSSRF----GK~i~l~f~~~g~i~Ga~i~~yLLEksRVv~-~~~gERnf 394 (1095)
.=.-|=|| +.-+.|-|-.+|-+.--++..-+|+|-.||- -...||+-
T Consensus 431 ~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERsl 482 (1042)
T KOG0924|consen 431 TVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSL 482 (1042)
T ss_pred ccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhccc
Confidence 01123333 2334566666676666666677777766654 33456654
No 201
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=83.08 E-value=0.68 Score=53.13 Aligned_cols=26 Identities=38% Similarity=0.549 Sum_probs=22.9
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
...|+|+|.+|||||+..+.++.++.
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCC
Confidence 46899999999999999999887764
No 202
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=83.05 E-value=1.2 Score=49.78 Aligned_cols=31 Identities=23% Similarity=0.388 Sum_probs=26.2
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yLa~~~ 321 (1095)
...-.+++.|++|+|||+.++.+-+.|...+
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l~~~~ 70 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLFKEMN 70 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 3456899999999999999999998886543
No 203
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=83.04 E-value=0.89 Score=50.32 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=22.1
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHH
Q 001346 296 IIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 296 IiisGESGAGKTe~~K~il~yLa~ 319 (1095)
|+++|-+|||||+.++.+-++|..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 899999999999999999988863
No 204
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=82.95 E-value=1.1 Score=47.01 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=22.4
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHH
Q 001346 296 IIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 296 IiisGESGAGKTe~~K~il~yLa~ 319 (1095)
|+|.|..|||||+.++.+-++|..
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 899999999999999999999865
No 205
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=82.91 E-value=0.78 Score=45.38 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
..+.+.|.|++|||||+..+.+...+
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEccCCCccccceeeecccc
Confidence 46789999999999999888765443
No 206
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=82.88 E-value=0.86 Score=51.66 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=21.7
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHH
Q 001346 294 QSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~yL 317 (1095)
+.||++|.+|||||+.++.+.+.+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 679999999999999999987765
No 207
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=82.79 E-value=0.85 Score=48.40 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~y 316 (1095)
---+.+.|.||||||+..|+|+.-
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~ 51 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGE 51 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 345789999999999999988643
No 208
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=82.79 E-value=1.3 Score=51.20 Aligned_cols=32 Identities=28% Similarity=0.278 Sum_probs=27.7
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHHhcC
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yLa~~~~ 322 (1095)
+..+.|.+.|.+|||||+++..+..++...++
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~ 143 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGK 143 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCC
Confidence 45789999999999999999999999886543
No 209
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=82.76 E-value=0.85 Score=48.90 Aligned_cols=45 Identities=20% Similarity=0.404 Sum_probs=30.4
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHHhcC---CCcchHHHHHhhh-----HHHHHhccc
Q 001346 296 IIISGESGAGKTETAKFAMQYLAALGG---GSEGIEYEILQTN-----HILEAFGNA 344 (1095)
Q Consensus 296 IiisGESGAGKTe~~K~il~yLa~~~~---~~~~ie~~il~sn-----piLEAFGNA 344 (1095)
|.|+|.+|||||+.++++-.+ +. +.+.+...+++-+ .|.+.||..
T Consensus 2 i~itG~~gsGKst~~~~l~~~----g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~ 54 (196)
T PRK14732 2 IGITGMIGGGKSTALKILEEL----GAFGISADRLAKRYTEPDSPILSELVSLLGPS 54 (196)
T ss_pred EEEECCCCccHHHHHHHHHHC----CCEEEecchHHHHHHhcCcHHHHHHHHHhChh
Confidence 789999999999999866543 22 2345666666533 266677763
No 210
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=82.70 E-value=0.92 Score=49.04 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
...+.+.|.|+||||||+..|.++-.+.
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 38 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGLDA 38 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 3568899999999999999999876543
No 211
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.65 E-value=1.4 Score=53.50 Aligned_cols=52 Identities=25% Similarity=0.441 Sum_probs=36.5
Q ss_pred HHHcccCCC----CCchhHHHHHHHHHHhh-CCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 264 TAYRQKVMD----SPHVYAIADTAYNEMMG-DGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 264 ~~y~~~~~~----~PHiyavA~~Ay~~m~~-~~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
+.||-+..+ .+|+- ...+.+.. .+-++++|++|+.|.|||+.++.+.+.|-.
T Consensus 6 ~kyRP~~~~divGq~~i~----~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHVK----KLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred HHHCCCCHHHccCcHHHH----HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 455554433 47763 34445544 445688999999999999999999887653
No 212
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=82.65 E-value=1.1 Score=48.48 Aligned_cols=51 Identities=25% Similarity=0.325 Sum_probs=32.1
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHHHhcCCCcchHHHHHhh----hHHHHHhccc
Q 001346 294 QSIIISGESGAGKTETAKFAMQYLAALGGGSEGIEYEILQT----NHILEAFGNA 344 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~yLa~~~~~~~~ie~~il~s----npiLEAFGNA 344 (1095)
=.|.|+|..|||||+.++++.+.|-..--..+.+-.+++.. .-|.+.||..
T Consensus 7 ~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~~~~~~~i~~~fG~~ 61 (204)
T PRK14733 7 YPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKKPSVIKKIAEKFGDE 61 (204)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCchHHHHHHHHHhCHH
Confidence 35899999999999998887654321100123444455443 2467788875
No 213
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=82.61 E-value=0.97 Score=48.43 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.+.|.|+||||||+..+.+.-.+
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 356889999999999999988886543
No 214
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=82.58 E-value=0.98 Score=51.01 Aligned_cols=74 Identities=24% Similarity=0.412 Sum_probs=47.4
Q ss_pred hcCccccccCCcEEEEcCCCCCCCCChHHHHHHcccC--------CCCCchhHHHHHHHHHHhhCCCceEEEEcCCCCCC
Q 001346 234 SRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKV--------MDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAG 305 (1095)
Q Consensus 234 ~~~~iYT~~G~iLiavNP~k~l~~Y~~~~~~~y~~~~--------~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAG 305 (1095)
.-|-=||..|--=+-||-|+...-|+- .++--+ ..-|-|+ +. +-...+--|+++|.+|||
T Consensus 70 E~Dfs~~~~~~~RfRvN~f~qr~~~a~----vlR~Ip~~i~~~e~LglP~i~-------~~-~~~~~~GLILVTGpTGSG 137 (353)
T COG2805 70 ELDFSYTLPGVARFRVNAFKQRGGYAL----VLRLIPSKIPTLEELGLPPIV-------RE-LAESPRGLILVTGPTGSG 137 (353)
T ss_pred ceeEEEecCCcceEEeehhhhcCCcEE----EEeccCccCCCHHHcCCCHHH-------HH-HHhCCCceEEEeCCCCCc
Confidence 346668888888888888876533321 011000 0114333 22 123456789999999999
Q ss_pred hhhHHHHHHHHHHH
Q 001346 306 KTETAKFAMQYLAA 319 (1095)
Q Consensus 306 KTe~~K~il~yLa~ 319 (1095)
||+|.-.++.|+-.
T Consensus 138 KSTTlAamId~iN~ 151 (353)
T COG2805 138 KSTTLAAMIDYINK 151 (353)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999864
No 215
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.58 E-value=0.97 Score=48.58 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.+.|.|+||||||+..|.+.-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999988886543
No 216
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=82.57 E-value=2.3 Score=48.05 Aligned_cols=46 Identities=24% Similarity=0.318 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHHhh---------CCCceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001346 276 VYAIADTAYNEMMG---------DGVNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1095)
Q Consensus 276 iyavA~~Ay~~m~~---------~~~~QsIiisGESGAGKTe~~K~il~yLa~~~ 321 (1095)
++.+..++++.++. .+..+.|++.|.+|+|||+++-.+..+|+..+
T Consensus 46 ~~~~~~e~l~~~~~~~~~~~~~~~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g 100 (272)
T TIGR00064 46 LKEILKEYLKEILKETDLELIVEENKPNVILFVGVNGVGKTTTIAKLANKLKKQG 100 (272)
T ss_pred HHHHHHHHHHHHHcccchhhcccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 44555555555542 23468999999999999999998888887654
No 217
>PRK10436 hypothetical protein; Provisional
Probab=82.52 E-value=0.88 Score=55.07 Aligned_cols=37 Identities=27% Similarity=0.426 Sum_probs=27.7
Q ss_pred HHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 282 TAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 282 ~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
..+..+.. ...=-|+|+|.+|||||+|...++.++..
T Consensus 208 ~~l~~~~~-~~~GliLvtGpTGSGKTTtL~a~l~~~~~ 244 (462)
T PRK10436 208 AQFRQALQ-QPQGLILVTGPTGSGKTVTLYSALQTLNT 244 (462)
T ss_pred HHHHHHHH-hcCCeEEEECCCCCChHHHHHHHHHhhCC
Confidence 34555542 23457999999999999999988888753
No 218
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=82.50 E-value=0.85 Score=52.88 Aligned_cols=27 Identities=41% Similarity=0.525 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.+.|.||||||||+..+.|+..+
T Consensus 40 ~~Ge~~~ivG~sGsGKSTL~~~l~Gl~ 66 (330)
T PRK09473 40 RAGETLGIVGESGSGKSQTAFALMGLL 66 (330)
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 356899999999999999999886554
No 219
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=82.48 E-value=1.1 Score=46.69 Aligned_cols=27 Identities=37% Similarity=0.351 Sum_probs=22.7
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001346 295 SIIISGESGAGKTETAKFAMQYLAALG 321 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il~yLa~~~ 321 (1095)
+++|.|++|+|||..+-.++...+..+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g 27 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARG 27 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCC
Confidence 489999999999998888887777544
No 220
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=82.47 E-value=1.5 Score=54.16 Aligned_cols=30 Identities=30% Similarity=0.465 Sum_probs=25.7
Q ss_pred hhCCCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 288 MGDGVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 288 ~~~~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
+....+|.|+|.||+|+|||..++.+.++.
T Consensus 81 l~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 81 LCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 445678999999999999999999997764
No 221
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=82.38 E-value=0.92 Score=52.64 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.+.|.|+||||||+..|.|+..+
T Consensus 45 ~~Ge~~~lvG~sGsGKSTLlk~i~Gl~ 71 (331)
T PRK15079 45 YEGETLGVVGESGCGKSTFARAIIGLV 71 (331)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 457899999999999999999886543
No 222
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=82.30 E-value=1.3 Score=43.46 Aligned_cols=26 Identities=46% Similarity=0.737 Sum_probs=23.9
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHHhc
Q 001346 296 IIISGESGAGKTETAKFAMQYLAALG 321 (1095)
Q Consensus 296 IiisGESGAGKTe~~K~il~yLa~~~ 321 (1095)
|+++|.+|+|||..+..+.++|+..+
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g 27 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKG 27 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 89999999999999999999998744
No 223
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=82.26 E-value=0.99 Score=48.65 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.+.|.|+||||||+..|.+.-.+
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 356899999999999999988886543
No 224
>PRK13768 GTPase; Provisional
Probab=82.25 E-value=1.2 Score=49.78 Aligned_cols=27 Identities=30% Similarity=0.498 Sum_probs=24.4
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001346 295 SIIISGESGAGKTETAKFAMQYLAALG 321 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il~yLa~~~ 321 (1095)
.|+|+|.+|+|||+.+..+..+|+..+
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g 30 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQG 30 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcC
Confidence 589999999999999999999998654
No 225
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=82.19 E-value=1 Score=48.90 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=23.7
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.+.|.|+||||||+..+.|+-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 356899999999999999999988665
No 226
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=82.15 E-value=1.7 Score=50.80 Aligned_cols=41 Identities=15% Similarity=0.272 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhC-CCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 279 IADTAYNEMMGD-GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 279 vA~~Ay~~m~~~-~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
-|...+..+... +-+++++|+|+.|.|||+.++.+.++|.+
T Consensus 30 ~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 30 EAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred HHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 344566666554 45899999999999999999999998876
No 227
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=82.02 E-value=1 Score=48.35 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...+.+.|.|+||||||+..+.+.-.
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45788999999999999988887544
No 228
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=82.00 E-value=1.6 Score=46.04 Aligned_cols=37 Identities=16% Similarity=0.219 Sum_probs=29.9
Q ss_pred HHHHhh-CCCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 284 YNEMMG-DGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 284 y~~m~~-~~~~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
++++.. .+-++++++.|+.|.|||+.++.+.+.|...
T Consensus 4 l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~ 41 (188)
T TIGR00678 4 LKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCE 41 (188)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 344444 4567999999999999999999999888753
No 229
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=81.96 E-value=0.66 Score=57.11 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=24.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
++.+.|.|.|+||||||+..|.++.++.
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5789999999999999999999987654
No 230
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=81.94 E-value=1 Score=48.00 Aligned_cols=24 Identities=29% Similarity=0.338 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCCChhhHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~ 315 (1095)
..+.+.|.|++|||||+..+.++-
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G 46 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGL 46 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 568899999999999998888864
No 231
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=81.93 E-value=0.96 Score=52.33 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.+-|.||||||||+..+.|+..+
T Consensus 31 ~~Ge~~~lvG~sGsGKSTL~~~l~Gll 57 (326)
T PRK11022 31 KQGEVVGIVGESGSGKSVSSLAIMGLI 57 (326)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 456889999999999999999987654
No 232
>PLN03025 replication factor C subunit; Provisional
Probab=81.90 E-value=1.8 Score=49.86 Aligned_cols=36 Identities=28% Similarity=0.372 Sum_probs=29.2
Q ss_pred HHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 283 AYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 283 Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
..+.+...+.-..++++|++|+|||++++.+.+.|.
T Consensus 24 ~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 24 RLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 345556666666799999999999999999988874
No 233
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=81.88 E-value=1.6 Score=49.84 Aligned_cols=28 Identities=29% Similarity=0.273 Sum_probs=25.2
Q ss_pred CCCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 290 DGVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 290 ~~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
.+.+=.|+|+|.||||||+.+..+-++|
T Consensus 89 ~~~p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 89 SKEPIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567899999999999999999999888
No 234
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.84 E-value=1 Score=49.34 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...+.+.|.|++|||||+..|.+.-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45788999999999999988888654
No 235
>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]
Probab=81.84 E-value=1.1 Score=50.56 Aligned_cols=25 Identities=36% Similarity=0.462 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
-.-|+|+|+||+||||++=-+++-=
T Consensus 145 GvGVLItG~SG~GKSElALeLi~rg 169 (308)
T COG1493 145 GVGVLITGPSGAGKSELALELIKRG 169 (308)
T ss_pred eeEEEEECCCCCCHhHHHHHHHHhc
Confidence 3679999999999999987776643
No 236
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=81.80 E-value=26 Score=38.17 Aligned_cols=55 Identities=15% Similarity=0.169 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001346 1001 PTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQK 1055 (1095)
Q Consensus 1001 ~~~l~elq~~~~eae~~l~~leeE~~~Lkeel~~~e~~~~e~e~k~~~~ee~~~k 1055 (1095)
+..+++++..+.+...+-+.+..||+.|++..+.+-.+..++...+..+.+++..
T Consensus 89 KaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~ 143 (292)
T KOG4005|consen 89 KARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAE 143 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444444444444444444445555544444444333
No 237
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.79 E-value=1.1 Score=46.90 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.+.|.|++|||||+..|.+.-.+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457889999999999999988886543
No 238
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=81.75 E-value=1.2 Score=50.65 Aligned_cols=27 Identities=37% Similarity=0.509 Sum_probs=24.5
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001346 295 SIIISGESGAGKTETAKFAMQYLAALG 321 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il~yLa~~~ 321 (1095)
-|+|.|++|+|||+.++.+-+++...+
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g 86 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLG 86 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 599999999999999999999988754
No 239
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.64 E-value=0.75 Score=50.17 Aligned_cols=27 Identities=26% Similarity=0.225 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.+.|.|+||||||+..|.+...+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999888876544
No 240
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=81.61 E-value=18 Score=36.92 Aligned_cols=65 Identities=25% Similarity=0.399 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Q 001346 1004 LAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEM---WQKQMASLQVSFTCFY 1068 (1095)
Q Consensus 1004 l~elq~~~~eae~~l~~leeE~~~Lkeel~~~e~~~~e~e~k~~~~ee~---~~k~~~~Lq~~l~~~k 1068 (1095)
.+.+.+++...+..+...+..+....+.+.+...+..+++.+++.++.. |.+.++.+...+.+++
T Consensus 75 ~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~~k 142 (143)
T PF12718_consen 75 AEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKEAK 142 (143)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhc
Confidence 3455555555555555555555555555555556666666666665554 6666666777766655
No 241
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.59 E-value=1.5 Score=53.73 Aligned_cols=45 Identities=24% Similarity=0.340 Sum_probs=33.5
Q ss_pred CCchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 273 SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 273 ~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
..|+...-..++. ..+-.++++++|++|+|||++++.+.+.|-+.
T Consensus 19 q~~v~~~L~~~i~---~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~ 63 (504)
T PRK14963 19 QEHVKEVLLAALR---QGRLGHAYLFSGPRGVGKTTTARLIAMAVNCS 63 (504)
T ss_pred hHHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 3666544433333 34567899999999999999999999988754
No 242
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.55 E-value=1.7 Score=53.63 Aligned_cols=52 Identities=21% Similarity=0.407 Sum_probs=37.0
Q ss_pred HHHcccCCC----CCchhHHHHHHHHHHhh-CCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 264 TAYRQKVMD----SPHVYAIADTAYNEMMG-DGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 264 ~~y~~~~~~----~PHiyavA~~Ay~~m~~-~~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
.+|+-+... .+|+-.. ..++.. .+-.+++|++|++|.|||+.++.+.+.|-+
T Consensus 8 ~k~rP~~f~divGq~~v~~~----L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 8 RKWRPKSFSELVGQEHVVRA----LTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred HHhCCCcHHHhcCcHHHHHH----HHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 455544332 4666543 444443 456789999999999999999999998864
No 243
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=81.52 E-value=1 Score=47.45 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.0
Q ss_pred EEEEcCCCCCChhhHHHHHHHHH
Q 001346 295 SIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il~yL 317 (1095)
-|||+|.|||||++.++.+++..
T Consensus 4 ~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999888887663
No 244
>PRK06620 hypothetical protein; Validated
Probab=81.51 E-value=1.8 Score=47.00 Aligned_cols=20 Identities=35% Similarity=0.466 Sum_probs=18.0
Q ss_pred eEEEEcCCCCCChhhHHHHH
Q 001346 294 QSIIISGESGAGKTETAKFA 313 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~i 313 (1095)
.+++|.|++|+|||+.++.+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~ 64 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIW 64 (214)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 78999999999999888864
No 245
>PRK09087 hypothetical protein; Validated
Probab=81.47 E-value=1.7 Score=47.56 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=20.0
Q ss_pred CceEEEEcCCCCCChhhHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~ 315 (1095)
.+..++|.|+||+|||+.+..+.+
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~ 66 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWRE 66 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 466799999999999988886554
No 246
>PRK02496 adk adenylate kinase; Provisional
Probab=81.46 E-value=1.1 Score=46.87 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=20.3
Q ss_pred EEEcCCCCCChhhHHHHHHHHH
Q 001346 296 IIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 296 IiisGESGAGKTe~~K~il~yL 317 (1095)
|+|.|.+|||||+.++.+-+.+
T Consensus 4 i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998765
No 247
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=81.44 E-value=2.1 Score=45.21 Aligned_cols=30 Identities=23% Similarity=0.257 Sum_probs=24.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
...+.|+|.|.+|.|||..+..+.+.++..
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~ 74 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRK 74 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccC
Confidence 356889999999999999999999888863
No 248
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=81.41 E-value=1.5 Score=52.83 Aligned_cols=64 Identities=30% Similarity=0.478 Sum_probs=40.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHHhcCCC------cchHHHHHhhhHHHHHhcccccC-CCCCCCccccEE
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYLAALGGGS------EGIEYEILQTNHILEAFGNAKTS-RNDNSSRFGKLI 359 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yLa~~~~~~------~~ie~~il~snpiLEAFGNAkT~-rN~NSSRFGK~i 359 (1095)
..|=+|+|+||||+||-..++.|=++ ....++. ..|-..+++| |-||..|-. .-.+.+|-|+|-
T Consensus 162 ~s~a~VLI~GESGtGKElvAr~IH~~-S~R~~~PFVavNcaAip~~l~ES----ELFGhekGAFTGA~~~r~G~fE 232 (464)
T COG2204 162 PSDASVLITGESGTGKELVARAIHQA-SPRAKGPFIAVNCAAIPENLLES----ELFGHEKGAFTGAITRRIGRFE 232 (464)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHhh-CcccCCCceeeecccCCHHHHHH----HhhcccccCcCCcccccCccee
Confidence 45678999999999998888766333 3322211 2343333333 459988821 235678999986
No 249
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=81.35 E-value=1.1 Score=48.24 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=21.2
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~ 315 (1095)
...+.+.|.|+||||||+..+.+.-
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIMG 48 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhC
Confidence 3578999999999999998887743
No 250
>PRK09039 hypothetical protein; Validated
Probab=81.25 E-value=1.2e+02 Score=35.60 Aligned_cols=51 Identities=24% Similarity=0.203 Sum_probs=23.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001346 998 QALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKS 1048 (1095)
Q Consensus 998 ~~l~~~l~elq~~~~eae~~l~~leeE~~~Lkeel~~~e~~~~e~e~k~~~ 1048 (1095)
..+..++.+.+....++...+..+..+++.|+.++..++..+...|.+.++
T Consensus 119 ~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~ 169 (343)
T PRK09039 119 GELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRE 169 (343)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444333
No 251
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=81.22 E-value=1.1 Score=50.60 Aligned_cols=22 Identities=27% Similarity=0.455 Sum_probs=19.1
Q ss_pred EEEcCCCCCChhhHHHHHHHHH
Q 001346 296 IIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 296 IiisGESGAGKTe~~K~il~yL 317 (1095)
|.|.|.||||||+.++.+...|
T Consensus 2 igI~G~sGsGKSTl~~~L~~ll 23 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSLF 23 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 6789999999999998887665
No 252
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=81.21 E-value=1 Score=48.30 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...+.+.|.|+||||||+..|.+.-.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 35688999999999999998887543
No 253
>PRK00023 cmk cytidylate kinase; Provisional
Probab=81.17 E-value=1.2 Score=48.85 Aligned_cols=26 Identities=35% Similarity=0.470 Sum_probs=23.1
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
+-.|.|+|.+|||||+.++.+.+.|-
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~ 29 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLG 29 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999988874
No 254
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=81.10 E-value=15 Score=32.42 Aligned_cols=56 Identities=18% Similarity=0.176 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001346 1006 ELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQ 1061 (1095)
Q Consensus 1006 elq~~~~eae~~l~~leeE~~~Lkeel~~~e~~~~e~e~k~~~~ee~~~k~~~~Lq 1061 (1095)
.+..+++..-....++..||..|+.+......+...+..++.........+++.|.
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk 59 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLK 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444444445556677778888877777777777777777666666666555543
No 255
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=80.94 E-value=83 Score=36.51 Aligned_cols=75 Identities=21% Similarity=0.332 Sum_probs=41.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Q 001346 994 QEQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMW-------QKQMASLQVSFTC 1066 (1095)
Q Consensus 994 ~e~~~~l~~~l~elq~~~~eae~~l~~leeE~~~Lkeel~~~e~~~~e~e~k~~~~ee~~-------~k~~~~Lq~~l~~ 1066 (1095)
.+++..++.++.+....++..++.+.+++.+.+.++..++....+..+++.++.+.+... ..++..|+.++..
T Consensus 208 ~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~ 287 (325)
T PF08317_consen 208 QEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDA 287 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 455555666666666666555555556666666666666555555555555555544332 2345555555544
Q ss_pred Hh
Q 001346 1067 FY 1068 (1095)
Q Consensus 1067 ~k 1068 (1095)
.+
T Consensus 288 Le 289 (325)
T PF08317_consen 288 LE 289 (325)
T ss_pred HH
Confidence 33
No 256
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=80.92 E-value=1 Score=57.18 Aligned_cols=28 Identities=25% Similarity=0.442 Sum_probs=23.9
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
..|.|-|.|+||||||+.+|+++.++.-
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~gly~p 525 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLGLYKP 525 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3588999999999999999999876553
No 257
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=80.90 E-value=1.4 Score=46.54 Aligned_cols=46 Identities=22% Similarity=0.454 Sum_probs=31.8
Q ss_pred EEEcCCCCCChhhHHHHHHHHH-HHhcCCCcchHHHHHhhh-----HHHHHhc
Q 001346 296 IIISGESGAGKTETAKFAMQYL-AALGGGSEGIEYEILQTN-----HILEAFG 342 (1095)
Q Consensus 296 IiisGESGAGKTe~~K~il~yL-a~~~~~~~~ie~~il~sn-----piLEAFG 342 (1095)
|.|+|-.|||||+.++++-+.. ..+- +.+.+..+++..+ .|.+.||
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i-~~D~~~~~~~~~~~~~~~~i~~~fg 53 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVI-DADKIAHQVVEKGSPAYEKIVDHFG 53 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEE-eCCHHHHHHHhcCChHHHHHHHHHC
Confidence 8899999999999988776543 1111 1245666666543 3788998
No 258
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=80.89 E-value=1.2 Score=48.80 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...+.+.|.|+||||||+..+.+.-.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 25 RPGEFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999988887543
No 259
>PF13479 AAA_24: AAA domain
Probab=80.85 E-value=1 Score=48.77 Aligned_cols=23 Identities=35% Similarity=0.385 Sum_probs=19.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFA 313 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~i 313 (1095)
+++..|+|.|+||+|||..++.+
T Consensus 1 ~~~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 1 KKPIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred CCceEEEEECCCCCCHHHHHHhC
Confidence 35789999999999999766554
No 260
>PLN02796 D-glycerate 3-kinase
Probab=80.84 E-value=1.2 Score=51.84 Aligned_cols=25 Identities=28% Similarity=0.218 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 294 QSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
=-|-|+|.||||||+.++.+...|.
T Consensus 101 liIGI~G~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 101 LVIGISAPQGCGKTTLVFALVYLFN 125 (347)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHhc
Confidence 3488999999999999998876654
No 261
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=80.82 E-value=3.3 Score=52.59 Aligned_cols=54 Identities=20% Similarity=0.354 Sum_probs=38.8
Q ss_pred HHHHcccCCC----CCchhHHHHHHHHHHhhC-CCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 263 ITAYRQKVMD----SPHVYAIADTAYNEMMGD-GVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 263 ~~~y~~~~~~----~PHiyavA~~Ay~~m~~~-~~~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
.++|+-+..+ ..|+-. .+++++.. +-.+++||+|..|.|||++++.+.+.|-+-
T Consensus 7 arKYRPqtFdEVIGQe~Vv~----~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe 65 (830)
T PRK07003 7 ARKWRPKDFASLVGQEHVVR----ALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65 (830)
T ss_pred HHHhCCCcHHHHcCcHHHHH----HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 3556654433 466654 44454544 458999999999999999999999988653
No 262
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.79 E-value=1.2 Score=47.89 Aligned_cols=26 Identities=27% Similarity=0.238 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
.. +.+.|.|++|||||+..+.++-.+
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCC
Confidence 45 899999999999999888876443
No 263
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.74 E-value=1.2 Score=48.77 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.+.|.|+||||||+..|.+.-.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 356889999999999999988886543
No 264
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=80.63 E-value=1.2 Score=46.62 Aligned_cols=25 Identities=28% Similarity=0.504 Sum_probs=20.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~ 315 (1095)
..+..|+|.||+|+||+..++.|-+
T Consensus 20 ~~~~pVlI~GE~GtGK~~lA~~IH~ 44 (168)
T PF00158_consen 20 SSDLPVLITGETGTGKELLARAIHN 44 (168)
T ss_dssp TSTS-EEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHH
Confidence 4568999999999999999988855
No 265
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=80.62 E-value=1.3 Score=45.68 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=22.1
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 294 QSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
+.|+|.|-+|||||+.++.+-+.|-
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999987663
No 266
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=80.61 E-value=1.1 Score=46.56 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=19.7
Q ss_pred CceEEEEcCCCCCChhhHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~ 315 (1095)
.--.|.|+|.||+|||+..|.+..
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~ 51 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVAS 51 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHh
Confidence 346899999999999998777643
No 267
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=80.59 E-value=1.1 Score=47.99 Aligned_cols=34 Identities=32% Similarity=0.498 Sum_probs=26.9
Q ss_pred HHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 284 YNEMMGDGVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 284 y~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
....+..+.++.|+|.|..|+|||...+.+++.+
T Consensus 11 l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 11 LKELLESGPSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp HHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred HHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 3444555678999999999999999999998877
No 268
>PRK09099 type III secretion system ATPase; Provisional
Probab=80.55 E-value=4.7 Score=48.53 Aligned_cols=39 Identities=18% Similarity=0.151 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 278 AIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 278 avA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...-.+...++.-.+.|.+.|.|.||+|||+..+.+..+
T Consensus 148 ~TGi~~ID~l~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~ 186 (441)
T PRK09099 148 PTGVRIVDGLMTLGEGQRMGIFAPAGVGKSTLMGMFARG 186 (441)
T ss_pred CCCceeccceeeecCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344456667766678999999999999999988776543
No 269
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=80.55 E-value=1.2 Score=48.80 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...+.+.|.|+||||||+..|.+.-.
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999988887543
No 270
>PRK11637 AmiB activator; Provisional
Probab=80.54 E-value=26 Score=42.10 Aligned_cols=66 Identities=15% Similarity=0.205 Sum_probs=38.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001346 997 VQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQV 1062 (1095)
Q Consensus 997 ~~~l~~~l~elq~~~~eae~~l~~leeE~~~Lkeel~~~e~~~~e~e~k~~~~ee~~~k~~~~Lq~ 1062 (1095)
...+..++..++.++......+...+.++..++.++...+.++.+++.++...++.+.+++..+..
T Consensus 70 ~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 70 RASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566666666666666666666666666666666666666666655555555444433
No 271
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=80.54 E-value=28 Score=44.50 Aligned_cols=16 Identities=38% Similarity=0.551 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 001346 1020 QKEEENAALREQLQQY 1035 (1095)
Q Consensus 1020 ~leeE~~~Lkeel~~~ 1035 (1095)
+++..|..|++.+-.+
T Consensus 372 qlEqqN~rLKdalVrL 387 (1243)
T KOG0971|consen 372 QLEQQNARLKDALVRL 387 (1243)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566666666555443
No 272
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=80.53 E-value=2.4 Score=54.38 Aligned_cols=38 Identities=34% Similarity=0.398 Sum_probs=28.9
Q ss_pred HHHHHHhh-CCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 282 TAYNEMMG-DGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 282 ~Ay~~m~~-~~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
.+++..+. ...+.++.|+|.+|.|||.+++.+++-|..
T Consensus 769 sfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqe 807 (1164)
T PTZ00112 769 GFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQH 807 (1164)
T ss_pred HHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34444444 444566789999999999999999998864
No 273
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=80.51 E-value=1.3 Score=47.48 Aligned_cols=26 Identities=31% Similarity=0.340 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...+.+.|.|++|||||+..|.+.-.
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999998888543
No 274
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=80.50 E-value=1.9 Score=51.54 Aligned_cols=61 Identities=21% Similarity=0.221 Sum_probs=36.6
Q ss_pred CCChHHHHHHcccC-CC-CCchhHHHHHHHHHHhhCC-----------CceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 257 IYGNKFITAYRQKV-MD-SPHVYAIADTAYNEMMGDG-----------VNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 257 ~Y~~~~~~~y~~~~-~~-~PHiyavA~~Ay~~m~~~~-----------~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
+.++.-+..|-+.. .. ++=+=+++..+|.++.+-. ....|++.|++|+|||+.++.+-+.+
T Consensus 59 ~~~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 59 LPTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred CCCHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 45666665554432 11 2333345555554433221 24789999999999999999886544
No 275
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=80.46 E-value=1.2 Score=53.60 Aligned_cols=40 Identities=23% Similarity=0.295 Sum_probs=29.4
Q ss_pred HHHHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 280 ADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 280 A~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
....++++... ..==|+++|..|||||+|..-++++|-.-
T Consensus 246 ~~~~~~~~~~~-p~GliLvTGPTGSGKTTTLY~~L~~ln~~ 285 (500)
T COG2804 246 QLARLLRLLNR-PQGLILVTGPTGSGKTTTLYAALSELNTP 285 (500)
T ss_pred HHHHHHHHHhC-CCeEEEEeCCCCCCHHHHHHHHHHHhcCC
Confidence 34556666532 23356889999999999999999988753
No 276
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=80.46 E-value=20 Score=40.84 Aligned_cols=38 Identities=26% Similarity=0.201 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001346 1002 TALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKW 1039 (1095)
Q Consensus 1002 ~~l~elq~~~~eae~~l~~leeE~~~Lkeel~~~e~~~ 1039 (1095)
++-..++.++++...+..++++|.+.|..++.+..+-.
T Consensus 141 EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layq 178 (401)
T PF06785_consen 141 EENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQ 178 (401)
T ss_pred HHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Confidence 33334444444444445555555555555554444333
No 277
>PLN02318 phosphoribulokinase/uridine kinase
Probab=80.39 E-value=1.9 Score=53.34 Aligned_cols=44 Identities=18% Similarity=0.220 Sum_probs=33.8
Q ss_pred CchhHHHHHHHHHHhhCC-CceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 274 PHVYAIADTAYNEMMGDG-VNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 274 PHiyavA~~Ay~~m~~~~-~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
-|=|-++-+|-+-+.... ..--|-|.|.||||||+.++.|...+
T Consensus 45 d~g~~~~ira~qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 45 EKGFFVVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred ccchhhhhHHHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 455667777777776533 34577899999999999999998765
No 278
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=80.37 E-value=1.2 Score=48.65 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~ 315 (1095)
...+.+.|.|+||||||+..|.+.-
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G 48 (236)
T cd03219 24 RPGEIHGLIGPNGAGKTTLFNLISG 48 (236)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcC
Confidence 3568899999999999999888854
No 279
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=80.32 E-value=0.98 Score=56.28 Aligned_cols=28 Identities=21% Similarity=0.515 Sum_probs=24.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
++.|.+.|.|+||||||+..|.++..+.
T Consensus 367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~~ 394 (582)
T PRK11176 367 PAGKTVALVGRSGSGKSTIANLLTRFYD 394 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 4679999999999999999999987664
No 280
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=80.26 E-value=1.3 Score=47.23 Aligned_cols=25 Identities=28% Similarity=0.518 Sum_probs=20.6
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 295 SIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
.++|.|.||||||...+.++.-|+.
T Consensus 40 h~li~G~tgsGKS~~l~~ll~~l~~ 64 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRTLLLSLAL 64 (205)
T ss_dssp SEEEE--TTSSHHHHHHHHHHHHHT
T ss_pred eEEEEcCCCCCccHHHHHHHHHHHH
Confidence 5999999999999999988887775
No 281
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=80.21 E-value=1.3 Score=45.83 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
...+.+.|.|++|||||+..+.+.-.+.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4578899999999999999998876543
No 282
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.17 E-value=1.3 Score=47.85 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=21.2
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~ 315 (1095)
...+.+.|.|++|||||+..+.+.-
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G 48 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLTT 48 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3568899999999999999988753
No 283
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.10 E-value=1.9 Score=53.84 Aligned_cols=53 Identities=26% Similarity=0.396 Sum_probs=38.6
Q ss_pred HHHHcccCCC----CCchhHHHHHHHHHHhhC-CCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 263 ITAYRQKVMD----SPHVYAIADTAYNEMMGD-GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 263 ~~~y~~~~~~----~PHiyavA~~Ay~~m~~~-~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
.++|+-+... .+|+-.+ ++++... +-.+++|++|+.|.|||++++.+-++|-+
T Consensus 7 a~KyRP~sf~dIiGQe~v~~~----L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 7 TARYRPQTFAEVAGQETVKAI----LSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred HHHhCCCCHHHhcCCHHHHHH----HHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 4556655433 4777443 4444444 44899999999999999999999998865
No 284
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.10 E-value=2 Score=53.69 Aligned_cols=54 Identities=22% Similarity=0.365 Sum_probs=37.5
Q ss_pred HHHcccCCC----CCchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 264 TAYRQKVMD----SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 264 ~~y~~~~~~----~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
++|+-...+ ..|+...-..++. ..+..+++||+|++|.|||+.++.+.++|-+.
T Consensus 8 ~kyRP~~~~eiiGq~~~~~~L~~~i~---~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~ 65 (585)
T PRK14950 8 RKWRSQTFAELVGQEHVVQTLRNAIA---EGRVAHAYLFTGPRGVGKTSTARILAKAVNCT 65 (585)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHH---hCCCceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 445544433 4666543333332 34568999999999999999999999998653
No 285
>PRK14530 adenylate kinase; Provisional
Probab=80.08 E-value=1.3 Score=47.79 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.5
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHH
Q 001346 295 SIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il~yLa 318 (1095)
-|+|.|.+|||||+.++.+.+.+-
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 499999999999999999987763
No 286
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=80.04 E-value=1.3 Score=48.61 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=21.4
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~ 315 (1095)
...+.+.|.|+||||||+..|.+.-
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLNL 50 (242)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3568999999999999999888753
No 287
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=80.01 E-value=1.3 Score=47.63 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~ 315 (1095)
...+.+.|.|+||||||+..|.+.-
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (218)
T cd03266 29 KPGEVTGLLGPNGAGKTTTLRMLAG 53 (218)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4578999999999999999888853
No 288
>PRK10646 ADP-binding protein; Provisional
Probab=80.00 E-value=3 Score=43.00 Aligned_cols=26 Identities=35% Similarity=0.427 Sum_probs=22.5
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
.-.|++.|+-|||||+-+|.+.+.|.
T Consensus 28 g~vi~L~GdLGaGKTtf~rgl~~~Lg 53 (153)
T PRK10646 28 ATVIYLYGDLGAGKTTFSRGFLQALG 53 (153)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45789999999999999999888763
No 289
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=79.98 E-value=1.3 Score=48.35 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=22.4
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
..+.+.|.|+||||||+..|.+.-.+
T Consensus 10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 10 QGEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56789999999999999999887554
No 290
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=79.97 E-value=1.4 Score=46.96 Aligned_cols=30 Identities=27% Similarity=0.432 Sum_probs=22.2
Q ss_pred hCCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 289 GDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 289 ~~~~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
....+..||+.|.+|||||+....++..+.
T Consensus 11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~ 40 (199)
T PF06414_consen 11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFG 40 (199)
T ss_dssp --SS-EEEEEES-TTSTTHHHHHHHHHHT-
T ss_pred cccCCEEEEEeCCCCCCHHHHHHHhhhhcc
Confidence 346789999999999999999888877653
No 291
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=79.93 E-value=1.3 Score=47.38 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...+.+.|.|+||||||+..|.+.-.
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35788999999999999988887543
No 292
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=79.93 E-value=1.3 Score=47.89 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=18.2
Q ss_pred CceEEEEcCCCCCChhhHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFA 313 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~i 313 (1095)
+-..++|.|.||||||+..+.+
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRcl 48 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCL 48 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4578999999999999876654
No 293
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=79.91 E-value=2.3 Score=53.58 Aligned_cols=34 Identities=29% Similarity=0.447 Sum_probs=27.6
Q ss_pred HHhhCCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 286 EMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 286 ~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
.......++.|+|.|++|+|||+.++.+......
T Consensus 168 ~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~ 201 (615)
T TIGR02903 168 AKVASPFPQHIILYGPPGVGKTTAARLALEEAKK 201 (615)
T ss_pred HHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhh
Confidence 3344567889999999999999999999777543
No 294
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.90 E-value=1.4 Score=47.31 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=21.3
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~ 315 (1095)
...+.+.|.|++|||||+..+.+.-
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G 48 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILG 48 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3567889999999999999988864
No 295
>PF13173 AAA_14: AAA domain
Probab=79.87 E-value=1.6 Score=43.15 Aligned_cols=26 Identities=35% Similarity=0.447 Sum_probs=23.7
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
++.++|.|..|+|||+.++.+++++.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999998776
No 296
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=79.87 E-value=1.2 Score=55.40 Aligned_cols=26 Identities=27% Similarity=0.506 Sum_probs=22.3
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
.=-|+|+|..|||||++...+++++.
T Consensus 316 ~Glilv~G~tGSGKTTtl~a~l~~~~ 341 (564)
T TIGR02538 316 QGMVLVTGPTGSGKTVSLYTALNILN 341 (564)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhC
Confidence 34688999999999999988888774
No 297
>PRK04195 replication factor C large subunit; Provisional
Probab=79.87 E-value=1.7 Score=52.96 Aligned_cols=28 Identities=21% Similarity=0.337 Sum_probs=24.0
Q ss_pred CCCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 290 DGVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 290 ~~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
......++|+|++|+|||+.++.+.+.+
T Consensus 36 g~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 36 GKPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3347899999999999999999987765
No 298
>PRK10908 cell division protein FtsE; Provisional
Probab=79.82 E-value=1.4 Score=47.81 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~ 315 (1095)
...+.+.|.|+||||||+..+.+.-
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICG 50 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4578899999999999999888754
No 299
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=79.79 E-value=1.4 Score=47.35 Aligned_cols=25 Identities=20% Similarity=0.542 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~ 315 (1095)
...+.+.|.|+||||||+..+.+..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIAG 50 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4678899999999999999888754
No 300
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=79.79 E-value=1.3 Score=47.27 Aligned_cols=25 Identities=36% Similarity=0.484 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~ 315 (1095)
...+.+.|.|+||||||+..+.+.-
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAG 48 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3568999999999999999888754
No 301
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=79.78 E-value=1.5 Score=46.91 Aligned_cols=28 Identities=29% Similarity=0.305 Sum_probs=23.5
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
++.|++.|.+|+|||+|+-.+-.|+...
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~ 28 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK 28 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc
Confidence 4679999999999999988777777654
No 302
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=79.71 E-value=1.3 Score=48.71 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...+.+.|.|+||||||+..|.+.-.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (247)
T TIGR00972 25 PKNQVTALIGPSGCGKSTLLRSLNRM 50 (247)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45788999999999999998887633
No 303
>PRK05439 pantothenate kinase; Provisional
Probab=79.70 E-value=2.7 Score=48.31 Aligned_cols=31 Identities=29% Similarity=0.336 Sum_probs=25.7
Q ss_pred CCCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 290 DGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 290 ~~~~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
.+.+--|-|+|-+|||||+.++.+...|...
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~ 113 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRW 113 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 4566788999999999999999888876543
No 304
>PRK13947 shikimate kinase; Provisional
Probab=79.68 E-value=1.5 Score=45.21 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.3
Q ss_pred EEEEcCCCCCChhhHHHHHHHHH
Q 001346 295 SIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il~yL 317 (1095)
.|+|.|-+|||||+.++.+-+-|
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 49999999999999999887654
No 305
>PRK13695 putative NTPase; Provisional
Probab=79.62 E-value=1.5 Score=45.67 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=21.6
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHH
Q 001346 296 IIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 296 IiisGESGAGKTe~~K~il~yLa~ 319 (1095)
|+|+|++|+|||+..+.+...+..
T Consensus 3 i~ltG~~G~GKTTll~~i~~~l~~ 26 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAELLKE 26 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999998887764
No 306
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=79.60 E-value=1.4 Score=47.61 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~ 315 (1095)
...+.+.|.|+||||||+..+.++-
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~i~G 52 (220)
T cd03245 28 RAGEKVAIIGRVGSGKSTLLKLLAG 52 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4678999999999999999888853
No 307
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.51 E-value=1.4 Score=45.77 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=21.4
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...+.+.|.|+||||||+..|.+.-.
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999988877543
No 308
>PRK06526 transposase; Provisional
Probab=79.51 E-value=1.6 Score=48.79 Aligned_cols=30 Identities=23% Similarity=0.241 Sum_probs=25.5
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yLa~~~ 321 (1095)
..+.++|.|.+|+|||..+..+...++..+
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g 126 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAG 126 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCC
Confidence 456799999999999999999988877543
No 309
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=79.45 E-value=1.4 Score=48.14 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=19.0
Q ss_pred CCceEEEEcCCCCCChhhHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKF 312 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~ 312 (1095)
...+.+.|.|+||||||+....
T Consensus 19 ~~Ge~~~l~G~sGsGKSTL~~~ 40 (226)
T cd03270 19 PRNKLVVITGVSGSGKSSLAFD 40 (226)
T ss_pred CCCcEEEEEcCCCCCHHHHHHH
Confidence 4678999999999999999743
No 310
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=79.44 E-value=1.7 Score=44.96 Aligned_cols=53 Identities=30% Similarity=0.355 Sum_probs=39.9
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHHHhcCCCcchHHHHHhhhHHHHHhcccccCCCCCCCccccEEEEEEcCCCceeeeE
Q 001346 294 QSIIISGESGAGKTETAKFAMQYLAALGGGSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAK 373 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~yLa~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~~~g~i~Ga~ 373 (1095)
=.|.|+|..|+|||+.++.+...|...+- .-|-|+.-.....|+-+|-+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~-------------------------------kvgGf~t~EVR~gGkR~GF~ 54 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGY-------------------------------KVGGFITPEVREGGKRIGFK 54 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCc-------------------------------eeeeEEeeeeecCCeEeeeE
Confidence 36999999999999999999888876432 22445655566678888887
Q ss_pred eeee
Q 001346 374 IQTF 377 (1095)
Q Consensus 374 i~~y 377 (1095)
|.+.
T Consensus 55 Ivdl 58 (179)
T COG1618 55 IVDL 58 (179)
T ss_pred EEEc
Confidence 7764
No 311
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=79.42 E-value=2.4 Score=52.74 Aligned_cols=44 Identities=32% Similarity=0.378 Sum_probs=33.8
Q ss_pred CchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 274 PHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 274 PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
|-|.++=.++|.. +.++.-.|+|+|.||||||+.++.+.+.|-.
T Consensus 375 peV~~iL~~~~~~--r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 375 PEVVAELRRTYPP--RHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred HHHHHHHHHHhcc--ccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 6666665555543 3445669999999999999999999888865
No 312
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=79.42 E-value=1.4 Score=48.32 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...+.+.|.|+||||||+..|.+.-.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 24 KKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999998887643
No 313
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=79.41 E-value=1.4 Score=50.40 Aligned_cols=24 Identities=42% Similarity=0.602 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~y 316 (1095)
.-.|+|.|+||+||||++=-+++.
T Consensus 146 G~GvLi~G~SG~GKSelALeLi~r 169 (308)
T PRK05428 146 GIGVLITGESGIGKSETALELIKR 169 (308)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 368999999999999999888775
No 314
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=79.40 E-value=2.2 Score=47.70 Aligned_cols=40 Identities=20% Similarity=0.273 Sum_probs=30.2
Q ss_pred CchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 274 PHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 274 PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
|++=.+-+++...+.. +..|+|.|++|+|||+.++.+-+.
T Consensus 5 ~~~~~l~~~~l~~l~~---g~~vLL~G~~GtGKT~lA~~la~~ 44 (262)
T TIGR02640 5 DAVKRVTSRALRYLKS---GYPVHLRGPAGTGKTTLAMHVARK 44 (262)
T ss_pred HHHHHHHHHHHHHHhc---CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 5555566666665553 578999999999999999887653
No 315
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=79.37 E-value=1.4 Score=47.97 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.+.|.|+||||||+..|.+.-.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 24 PKGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999998876443
No 316
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=79.34 E-value=1.7 Score=45.84 Aligned_cols=27 Identities=37% Similarity=0.512 Sum_probs=23.5
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
..-|+|.|-.|||||+.++.+-++|..
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 356999999999999999999887754
No 317
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.28 E-value=22 Score=39.78 Aligned_cols=78 Identities=9% Similarity=0.157 Sum_probs=60.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001346 994 QEQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQVSFTCFYTDI 1071 (1095)
Q Consensus 994 ~e~~~~l~~~l~elq~~~~eae~~l~~leeE~~~Lkeel~~~e~~~~e~e~k~~~~ee~~~k~~~~Lq~~l~~~kksl 1071 (1095)
+..+..++.+...++.+++.....+.+...+...++++..+...++.+++.+++..++.+..+.+.|...++++..+=
T Consensus 37 ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG 114 (265)
T COG3883 37 DSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNG 114 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 455667777777777777777777778888888888888888888888888888888888887777777777766553
No 318
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=79.27 E-value=2.4 Score=52.71 Aligned_cols=54 Identities=22% Similarity=0.348 Sum_probs=38.8
Q ss_pred HHHHcccCCC----CCchhHHHHHHHHHHh-hCCCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 263 ITAYRQKVMD----SPHVYAIADTAYNEMM-GDGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 263 ~~~y~~~~~~----~PHiyavA~~Ay~~m~-~~~~~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
.+.|+-.... .+|+- ..+.++. ..+..++++++|+.|.|||+.++.+-+.|.+.
T Consensus 7 ~~KyRP~~F~dIIGQe~iv----~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~ 65 (605)
T PRK05896 7 YRKYRPHNFKQIIGQELIK----KILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCL 65 (605)
T ss_pred HHHhCCCCHHHhcCcHHHH----HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3556544433 46654 3444444 44678999999999999999999999998754
No 319
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=79.25 E-value=2.3 Score=48.89 Aligned_cols=42 Identities=19% Similarity=0.189 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 276 VYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 276 iyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
+..+.+.-+.....-.....|++.|-+|||||+.++.+-+.|
T Consensus 116 ~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 116 VRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred HHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 444444444444455678899999999999999999987654
No 320
>PLN02348 phosphoribulokinase
Probab=79.23 E-value=2.4 Score=50.04 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
++.--|-|+|-||||||+.++.|.+.|-.
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 44456669999999999999999888753
No 321
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=79.22 E-value=1.5 Score=47.82 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...+.+.|.|++|||||+..|.+.-.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 24 KQGEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999988887643
No 322
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=79.20 E-value=1.6 Score=47.64 Aligned_cols=24 Identities=46% Similarity=0.573 Sum_probs=21.2
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHH
Q 001346 295 SIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il~yLa 318 (1095)
.|.|.|.||||||+.++.+-+.|-
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~~ 27 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKLG 27 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999987654
No 323
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=79.16 E-value=1.5 Score=47.74 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...+.+.|.|++|||||+..|.+.-.
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 34 KRGETIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999988888644
No 324
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.15 E-value=32 Score=30.53 Aligned_cols=33 Identities=15% Similarity=0.261 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001346 1017 TLGQKEEENAALREQLQQYDAKWLEYEAKMKSM 1049 (1095)
Q Consensus 1017 ~l~~leeE~~~Lkeel~~~e~~~~e~e~k~~~~ 1049 (1095)
++.++.++|..|..+.+.....+..++.+.+.+
T Consensus 26 EieELKEknn~l~~e~q~~q~~reaL~~eneql 58 (79)
T COG3074 26 EIEELKEKNNSLSQEVQNAQHQREALERENEQL 58 (79)
T ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444333
No 325
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=79.11 E-value=1.3 Score=48.55 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=17.0
Q ss_pred CceEEEEcCCCCCChhhHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFA 313 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~i 313 (1095)
+.-.+.|.|+||||||+...++
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLnii 51 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLL 51 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3457899999999999765443
No 326
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=79.09 E-value=1.5 Score=46.18 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=20.3
Q ss_pred CCceEEEEcCCCCCChhhHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAM 314 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il 314 (1095)
....-+.|.|+||||||+..+.++
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 345778999999999999999774
No 327
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=79.09 E-value=1.5 Score=47.39 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=21.3
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~ 315 (1095)
...+.+.|.|+||||||+..|.+.-
T Consensus 29 ~~G~~~~i~G~nGsGKSTLl~~i~G 53 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLHLLGG 53 (221)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3568899999999999998888753
No 328
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=79.08 E-value=3.3 Score=48.11 Aligned_cols=32 Identities=28% Similarity=0.278 Sum_probs=28.4
Q ss_pred CCCceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001346 290 DGVNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1095)
Q Consensus 290 ~~~~QsIiisGESGAGKTe~~K~il~yLa~~~ 321 (1095)
.+..-.|-|+|.+|||||+.+..+..+|...+
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g 84 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQG 84 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 57788999999999999999999999987643
No 329
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=79.03 E-value=1.5 Score=47.04 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.+.|.|++|||||+..|.+.-.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 24 ADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999988886543
No 330
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.98 E-value=1.4 Score=49.29 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...+.+.|.|+||||||+..|.+.-.
T Consensus 48 ~~Ge~~~l~G~nGsGKSTLl~~L~Gl 73 (269)
T cd03294 48 REGEIFVIMGLSGSGKSTLLRCINRL 73 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999998887543
No 331
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=78.95 E-value=1.5 Score=47.93 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=21.4
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~ 315 (1095)
...+.+.|.|+||||||+..+.+.-
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~G 57 (233)
T PRK11629 33 GEGEMMAIVGSSGSGKSTLLHLLGG 57 (233)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3568899999999999999888864
No 332
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=78.93 E-value=0.9 Score=45.50 Aligned_cols=26 Identities=31% Similarity=0.583 Sum_probs=20.3
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
..+..|+|.||+|+||+..++.+-.+
T Consensus 19 ~~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 19 KSSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp CSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 56788999999999999887765443
No 333
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=78.87 E-value=37 Score=39.20 Aligned_cols=75 Identities=16% Similarity=0.228 Sum_probs=40.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Q 001346 994 QEQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMW-------QKQMASLQVSFTC 1066 (1095)
Q Consensus 994 ~e~~~~l~~~l~elq~~~~eae~~l~~leeE~~~Lkeel~~~e~~~~e~e~k~~~~ee~~-------~k~~~~Lq~~l~~ 1066 (1095)
.++...++.++.+....+......+.+++++.+.+...++....+..+++....+.+... ..++..|+.++..
T Consensus 203 ~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~ 282 (312)
T smart00787 203 PTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKL 282 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555555555555555555554432 2455555555544
Q ss_pred Hh
Q 001346 1067 FY 1068 (1095)
Q Consensus 1067 ~k 1068 (1095)
.+
T Consensus 283 Le 284 (312)
T smart00787 283 LQ 284 (312)
T ss_pred HH
Confidence 43
No 334
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=78.87 E-value=1.5 Score=48.85 Aligned_cols=27 Identities=22% Similarity=0.463 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.+.|.|+||||||+..+.++-.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 25 ESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999999887544
No 335
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=78.87 E-value=1.6 Score=49.24 Aligned_cols=40 Identities=18% Similarity=0.159 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 279 IADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 279 vA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
.++.....+...+.-++++|.|.+|||||+..+.+...+.
T Consensus 97 ~~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 97 AADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred cHHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccC
Confidence 4555555666555558999999999999999988876654
No 336
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=78.82 E-value=1.5 Score=48.59 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...+.+.|.|++|||||+..|.+.-.
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 30 EQNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45689999999999999999888653
No 337
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=78.68 E-value=1.6 Score=46.39 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...+.+.|.|++|||||+..+.+.--
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 35788999999999999988887553
No 338
>PRK07952 DNA replication protein DnaC; Validated
Probab=78.65 E-value=2.1 Score=47.58 Aligned_cols=29 Identities=34% Similarity=0.394 Sum_probs=26.2
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYLAALG 321 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yLa~~~ 321 (1095)
.+.++++|.+|+|||+.+..|..+|...+
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g 127 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRG 127 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 46899999999999999999999998754
No 339
>PRK05642 DNA replication initiation factor; Validated
Probab=78.65 E-value=3.2 Score=45.65 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=22.8
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 294 QSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
-.++|.|++|+|||+.+..+..++...
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~ 72 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR 72 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 468999999999999999888777643
No 340
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=78.61 E-value=4.4 Score=48.67 Aligned_cols=40 Identities=23% Similarity=0.243 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHH
Q 001346 276 VYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 276 iyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~ 315 (1095)
++.+.-+|...++.-.+.|-+.|.|.||+|||+..+.++.
T Consensus 145 ~l~TGi~aID~ll~i~~GqrigI~G~sG~GKSTLL~~I~~ 184 (444)
T PRK08972 145 PLDVGVRAINAMLTVGKGQRMGLFAGSGVGKSVLLGMMTR 184 (444)
T ss_pred cccccceeecceEEEcCCCEEEEECCCCCChhHHHHHhcc
Confidence 4556667777777778899999999999999999877764
No 341
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=78.60 E-value=1.5 Score=47.85 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.+.|.|.+|||||+..|.+.-.+
T Consensus 10 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 10 KRGEVLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999888886543
No 342
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=78.59 E-value=2.4 Score=49.45 Aligned_cols=32 Identities=25% Similarity=0.415 Sum_probs=27.0
Q ss_pred hCCCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 289 GDGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 289 ~~~~~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
-+..-..|+|+|++|+|||+.++.+-+||-..
T Consensus 34 ~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~ 65 (350)
T CHL00081 34 IDPKIGGVMIMGDRGTGKSTTIRALVDLLPEI 65 (350)
T ss_pred cCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 34445789999999999999999999998753
No 343
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=78.54 E-value=1.5 Score=48.52 Aligned_cols=26 Identities=35% Similarity=0.359 Sum_probs=22.1
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
..+.+.|.|++|||||+..|.|.-.+
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46889999999999999999886543
No 344
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=78.51 E-value=2.2 Score=45.98 Aligned_cols=37 Identities=27% Similarity=0.369 Sum_probs=27.8
Q ss_pred HHHHHhhCC--CceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 283 AYNEMMGDG--VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 283 Ay~~m~~~~--~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
....|+..+ +...++|+|++|+|||..+..++..++.
T Consensus 7 ~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~ 45 (218)
T cd01394 7 GLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAG 45 (218)
T ss_pred HHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 344555543 4577999999999999998888776654
No 345
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=78.47 E-value=23 Score=39.61 Aligned_cols=79 Identities=13% Similarity=0.156 Sum_probs=55.6
Q ss_pred HHHHHhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001346 994 QEQVQALPTALAELQRRV-------LKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQVSFTC 1066 (1095)
Q Consensus 994 ~e~~~~l~~~l~elq~~~-------~eae~~l~~leeE~~~Lkeel~~~e~~~~e~e~k~~~~ee~~~k~~~~Lq~~l~~ 1066 (1095)
+.++.+|+.+|..++..- .+|+-.|++...|+++|++-++....-+.+--+.++++-..+..|..+|+..|..
T Consensus 88 etEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ekDkGiQKYFvDINiQN~KLEsLLqs 167 (305)
T PF15290_consen 88 ETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEKDKGIQKYFVDINIQNKKLESLLQS 167 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHhhhhhhHhHHHHHHHH
Confidence 445566666655554332 2445567788888999998888888888887778888777777788888888776
Q ss_pred Hhhhhh
Q 001346 1067 FYTDII 1072 (1095)
Q Consensus 1067 ~kksla 1072 (1095)
++....
T Consensus 168 MElAq~ 173 (305)
T PF15290_consen 168 MELAQS 173 (305)
T ss_pred HHHHHh
Confidence 554443
No 346
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=78.45 E-value=1.4 Score=49.80 Aligned_cols=27 Identities=19% Similarity=0.375 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.+.|.|+||||||+..|.++-.+
T Consensus 35 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 61 (289)
T PRK13645 35 KKNKVTCVIGTTGSGKSTMIQLTNGLI 61 (289)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356889999999999999999887544
No 347
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=78.34 E-value=1.7 Score=47.30 Aligned_cols=27 Identities=30% Similarity=0.314 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.+.|.|+||||||+..|.+...+
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 31 ESGQVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCcc
Confidence 467999999999999999999887554
No 348
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=78.34 E-value=1.5 Score=46.66 Aligned_cols=50 Identities=28% Similarity=0.426 Sum_probs=32.0
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHHHhcCCCcchHHHHHhh-----hHHHHHhccc
Q 001346 294 QSIIISGESGAGKTETAKFAMQYLAALGGGSEGIEYEILQT-----NHILEAFGNA 344 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~yLa~~~~~~~~ie~~il~s-----npiLEAFGNA 344 (1095)
.-|.|+|-+|||||+.++++-++=+.+ -..+.+-.+++.. .-|.+.||..
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~~g~~~-i~~D~~~~~~~~~~~~~~~~i~~~fg~~ 57 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAELGAPV-IDADAIAHEVVEPGGPALQAIVEAFGPE 57 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHHcCCEE-EEecHHHHHHhhccHHHHHHHHHHhCHH
Confidence 469999999999999999877631110 0123455555532 3466788864
No 349
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.28 E-value=2.6 Score=50.12 Aligned_cols=37 Identities=24% Similarity=0.329 Sum_probs=31.0
Q ss_pred HHHHHhhC-CCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 283 AYNEMMGD-GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 283 Ay~~m~~~-~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
.+++++.. +-++++|++|+.|.|||+.++.+-++|-+
T Consensus 27 ~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 27 TIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred HHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 45666654 56799999999999999999999988865
No 350
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.26 E-value=1.6 Score=47.69 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=21.6
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...+.+.|.|+||||||+..|.+.-.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999998888543
No 351
>PRK01184 hypothetical protein; Provisional
Probab=78.23 E-value=1.5 Score=45.97 Aligned_cols=18 Identities=39% Similarity=0.518 Sum_probs=16.1
Q ss_pred EEEEcCCCCCChhhHHHH
Q 001346 295 SIIISGESGAGKTETAKF 312 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~ 312 (1095)
-|+|+|.+|||||+.+++
T Consensus 3 ~i~l~G~~GsGKsT~a~~ 20 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSKI 20 (184)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 488999999999999884
No 352
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=78.23 E-value=2 Score=51.75 Aligned_cols=34 Identities=21% Similarity=0.340 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhhC-----CCceEEEEcCCCCCChhhHHH
Q 001346 278 AIADTAYNEMMGD-----GVNQSIIISGESGAGKTETAK 311 (1095)
Q Consensus 278 avA~~Ay~~m~~~-----~~~QsIiisGESGAGKTe~~K 311 (1095)
.-.+.-+...+.+ ...+.|.|.|+||||||+..+
T Consensus 12 r~Ie~~l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 12 RKIQTDLERILVKFNKELPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred hHHHHHHHHHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence 3344445555544 578999999999999999998
No 353
>PRK10884 SH3 domain-containing protein; Provisional
Probab=78.21 E-value=21 Score=38.76 Aligned_cols=39 Identities=13% Similarity=0.184 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001346 1017 TLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQK 1055 (1095)
Q Consensus 1017 ~l~~leeE~~~Lkeel~~~e~~~~e~e~k~~~~ee~~~k 1055 (1095)
++.+.+..+..|+++.+++.++...++.+...++.++..
T Consensus 126 ~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~ 164 (206)
T PRK10884 126 KVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDD 164 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444433
No 354
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.21 E-value=1.6 Score=46.77 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...+.+.|.|++|||||+..|.+...
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~l~gl 47 (211)
T cd03298 22 AQGEITAIVGPSGSGKSTLLNLIAGF 47 (211)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45788999999999999998888644
No 355
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=78.20 E-value=2.4 Score=48.15 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
+..+.++|.|++|+|||..++.+.+.+
T Consensus 28 ~~~~~~ll~Gp~G~GKT~la~~ia~~~ 54 (305)
T TIGR00635 28 EALDHLLLYGPPGLGKTTLAHIIANEM 54 (305)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 456889999999999999999886654
No 356
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.17 E-value=2.6 Score=51.85 Aligned_cols=54 Identities=17% Similarity=0.344 Sum_probs=39.8
Q ss_pred HHHHcccCCC----CCchhHHHHHHHHHHh-hCCCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 263 ITAYRQKVMD----SPHVYAIADTAYNEMM-GDGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 263 ~~~y~~~~~~----~PHiyavA~~Ay~~m~-~~~~~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
.++|+-+... .+||-. +..++. ..+-+++++++|..|.|||++++.+.+.|-+.
T Consensus 7 ~~kyRP~~f~divGq~~v~~----~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 7 ARKWRPRCFQEVIGQAPVVR----ALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred HHHHCCCCHHHhcCCHHHHH----HHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4566655443 477654 444554 45678999999999999999999999988653
No 357
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=78.16 E-value=1.6 Score=46.09 Aligned_cols=28 Identities=32% Similarity=0.364 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
.....+.|.|+||||||+..|.+.-.+.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 4567899999999999999998876554
No 358
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=78.14 E-value=2.3 Score=45.47 Aligned_cols=28 Identities=25% Similarity=0.227 Sum_probs=22.4
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
+.+.+.|+|++|||||..+..+....+.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~ 38 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAAR 38 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5789999999999999888666555443
No 359
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=78.13 E-value=1.9 Score=41.32 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=23.1
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 295 SIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
.++|.|++|+|||.++-.++.++...
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~ 27 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDS 27 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhc
Confidence 37899999999999999999888765
No 360
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=78.11 E-value=1.7 Score=46.39 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=21.6
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~ 315 (1095)
...+.+.|.|+||||||+..+.++-
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~G 49 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKTTLLKLIAG 49 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4568899999999999999988764
No 361
>PRK06921 hypothetical protein; Provisional
Probab=78.09 E-value=3.2 Score=46.72 Aligned_cols=29 Identities=31% Similarity=0.350 Sum_probs=25.0
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
....+++.|.+|+|||+.+..|.+.+...
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~ 144 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRK 144 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhh
Confidence 46899999999999999999888877653
No 362
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=78.06 E-value=1.6 Score=48.13 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...+.+.|.|+||||||+..+.+.-.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 27 PDNTITALMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 35688999999999999988887543
No 363
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=78.06 E-value=1.9 Score=47.52 Aligned_cols=41 Identities=29% Similarity=0.390 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhC-CCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 279 IADTAYNEMMGD-GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 279 vA~~Ay~~m~~~-~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
+.+++|..|... ..+.+-.+.|++|+||||++|.+=+.|..
T Consensus 17 lt~r~~~~l~~al~~~~~~~~~GpagtGKtetik~La~~lG~ 58 (231)
T PF12774_consen 17 LTDRCFLTLTQALSLNLGGALSGPAGTGKTETIKDLARALGR 58 (231)
T ss_dssp HHHHHHHHHHHHHCTTTEEEEESSTTSSHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHHhccCCCCCCcCCCCCCchhHHHHHHHHhCC
Confidence 467777777542 45688899999999999999888665553
No 364
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=78.03 E-value=1.7 Score=47.36 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=21.4
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~ 315 (1095)
...+.+.|.|.+|||||+..+.++-
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G 55 (225)
T PRK10247 31 RAGEFKLITGPSGCGKSTLLKIVAS 55 (225)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3578999999999999998888754
No 365
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=78.02 E-value=1.7 Score=46.52 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=21.6
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
....+.|.|++|||||+..+.++..+
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 46788999999999999988876443
No 366
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=77.88 E-value=1.6 Score=47.82 Aligned_cols=25 Identities=32% Similarity=0.344 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~ 315 (1095)
...+.+.|.|++|||||+..+.|+-
T Consensus 45 ~~Ge~~~i~G~NGsGKSTLl~~i~G 69 (236)
T cd03267 45 EKGEIVGFIGPNGAGKTTTLKILSG 69 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3578999999999999999998854
No 367
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=77.88 E-value=2.7 Score=44.92 Aligned_cols=39 Identities=26% Similarity=0.379 Sum_probs=31.3
Q ss_pred HHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001346 282 TAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1095)
Q Consensus 282 ~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~ 321 (1095)
+|++.++. ..++.++|.|..|+|||++.+.+.+++...+
T Consensus 8 ~a~~~~l~-~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g 46 (196)
T PF13604_consen 8 EAVRAILT-SGDRVSVLQGPAGTGKTTLLKALAEALEAAG 46 (196)
T ss_dssp HHHHHHHH-CTCSEEEEEESTTSTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHh-cCCeEEEEEECCCCCHHHHHHHHHHHHHhCC
Confidence 45555554 4578899999999999999999999888753
No 368
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=77.84 E-value=1.7 Score=48.07 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.+.|.|++|||||+..|.+.-.+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 28 EEKELTALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 356889999999999999998886543
No 369
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=77.83 E-value=1.6 Score=48.65 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.+.|.|+||||||+..|.|+-.+
T Consensus 36 ~~Ge~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 36 PAGQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356889999999999999999887654
No 370
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=77.78 E-value=1.7 Score=48.69 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...+.+.|.|+||||||+..|.+.-.
T Consensus 45 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 70 (268)
T PRK14248 45 EKHAVTALIGPSGCGKSTFLRSINRM 70 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 45789999999999999999988654
No 371
>PRK13946 shikimate kinase; Provisional
Probab=77.76 E-value=1.8 Score=45.73 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=22.9
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
....|++.|-+|||||+.++.+-+.|
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999987766
No 372
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=77.75 E-value=1.6 Score=47.42 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~ 315 (1095)
...+.+.|.|++|||||+..+.+.-
T Consensus 46 ~~Ge~~~i~G~nGsGKSTLl~~l~G 70 (224)
T cd03220 46 PRGERIGLIGRNGAGKSTLLRLLAG 70 (224)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3578999999999999999988864
No 373
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=77.71 E-value=2 Score=46.20 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=22.7
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 294 QSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
.-|.|+|..|||||+..+.+++.|..
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~l~~ 27 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRALRQ 27 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhCc
Confidence 35889999999999999999987764
No 374
>PRK07429 phosphoribulokinase; Provisional
Probab=77.69 E-value=1.6 Score=50.55 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
+.=-|-|+|.||||||+.++.+...|
T Consensus 7 ~~~IIgI~G~SGSGKSTla~~L~~ll 32 (327)
T PRK07429 7 RPVLLGVAGDSGCGKTTFLRGLADLL 32 (327)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHhHh
Confidence 44567899999999999998886554
No 375
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=77.69 E-value=1.9 Score=46.38 Aligned_cols=49 Identities=22% Similarity=0.380 Sum_probs=31.6
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHHHhcCCCcchHHHHHhh-----hHHHHHhccc
Q 001346 295 SIIISGESGAGKTETAKFAMQYLAALGGGSEGIEYEILQT-----NHILEAFGNA 344 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il~yLa~~~~~~~~ie~~il~s-----npiLEAFGNA 344 (1095)
.|.|+|.+|||||+.++++..+=+.+= +.+.+...++.. ..|.+.||..
T Consensus 3 ~igitG~igsGKst~~~~l~~~g~~vi-d~D~i~~~~~~~~~~~~~~l~~~fg~~ 56 (200)
T PRK14734 3 RIGLTGGIGSGKSTVADLLSSEGFLIV-DADQVARDIVEPGQPALAELAEAFGDD 56 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCeEE-eCcHHHHHHHhcCCHHHHHHHHHhCcc
Confidence 589999999999999988875211100 123455555542 3567777764
No 376
>PRK00625 shikimate kinase; Provisional
Probab=77.63 E-value=1.8 Score=45.48 Aligned_cols=24 Identities=29% Similarity=0.456 Sum_probs=21.0
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHH
Q 001346 295 SIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il~yLa 318 (1095)
-|++.|-.|||||+.+|.+-+.|-
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 399999999999999999977653
No 377
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=77.63 E-value=61 Score=36.45 Aligned_cols=12 Identities=17% Similarity=0.135 Sum_probs=5.3
Q ss_pred HHHHHHHHhhhh
Q 001346 1060 LQVSFTCFYTDI 1071 (1095)
Q Consensus 1060 Lq~~l~~~kksl 1071 (1095)
++..+...+..+
T Consensus 138 l~~~l~~~r~~l 149 (302)
T PF10186_consen 138 LQSQLARRRRQL 149 (302)
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
No 378
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=77.55 E-value=1.7 Score=47.10 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...+.+.|.|++|||||+..+.+.-.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 29 KKGETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999988887543
No 379
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=77.52 E-value=81 Score=43.25 Aligned_cols=34 Identities=18% Similarity=0.156 Sum_probs=20.1
Q ss_pred HHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHH
Q 001346 887 IRLQKCFRGYQARSRFRELCNGVITLQSFARGEN 920 (1095)
Q Consensus 887 i~IQa~~Rg~~aRr~y~~lr~aai~IQs~~Rg~~ 920 (1095)
..|..|+|-...-+.+..++..+..++..++...
T Consensus 226 ~~i~~W~~~~~~~~~~~~~r~~~~~l~~~~~~l~ 259 (1201)
T PF12128_consen 226 NDIDDWLRDIRASQGFEKVRPEFDKLQQQYRQLQ 259 (1201)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666655555566666666666666655444
No 380
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=77.51 E-value=1.9 Score=44.28 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=22.4
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 294 QSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
-.|++.|.||||||+..|.+.+-|-
T Consensus 13 ~~i~vmGvsGsGKSTigk~L~~~l~ 37 (191)
T KOG3354|consen 13 YVIVVMGVSGSGKSTIGKALSEELG 37 (191)
T ss_pred eeEEEEecCCCChhhHHHHHHHHhC
Confidence 4799999999999999999987665
No 381
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=77.44 E-value=1.8 Score=46.26 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 29 ~~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 29 PKGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 467899999999999999988876543
No 382
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=77.40 E-value=1.8 Score=49.37 Aligned_cols=24 Identities=38% Similarity=0.576 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...++|.|+||+||||++=-+++.
T Consensus 146 g~gvli~G~sg~GKS~lal~Li~r 169 (304)
T TIGR00679 146 GVGVLITGKSGVGKSETALELINR 169 (304)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 578999999999999998877775
No 383
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=77.39 E-value=1.8 Score=46.71 Aligned_cols=26 Identities=31% Similarity=0.277 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...+.+.|.|+||||||+..|.+.-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 26 YKGEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999988888643
No 384
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=77.35 E-value=1.8 Score=45.22 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.+.|.|.+|||||+..|.+.-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 356889999999999999888876543
No 385
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=77.34 E-value=1.8 Score=45.29 Aligned_cols=27 Identities=30% Similarity=0.334 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
.+.+.+.|.|.||||||+..+.+.-.+
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999888886543
No 386
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=77.33 E-value=31 Score=36.92 Aligned_cols=70 Identities=21% Similarity=0.338 Sum_probs=48.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001346 994 QEQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQVS 1063 (1095)
Q Consensus 994 ~e~~~~l~~~l~elq~~~~eae~~l~~leeE~~~Lkeel~~~e~~~~e~e~k~~~~ee~~~k~~~~Lq~~ 1063 (1095)
...+..+..++..++.++...+..+.++..-++.++.++..+.-+...+|.+...++++.+..++.|-..
T Consensus 115 ~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~ 184 (194)
T PF08614_consen 115 ERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQR 184 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666777777777777777777777777777777777777777777777777777766666555433
No 387
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.31 E-value=1.8 Score=45.97 Aligned_cols=24 Identities=33% Similarity=0.351 Sum_probs=21.1
Q ss_pred CCceEEEEcCCCCCChhhHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAM 314 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il 314 (1095)
...+.+.|.|+||||||+..|.+.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~ 54 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLA 54 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHh
Confidence 456889999999999999988876
No 388
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=77.30 E-value=1.8 Score=47.51 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.+.|.|.+|||||+..|.++-.+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 25 DQGEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999998886543
No 389
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=77.29 E-value=1.7 Score=48.58 Aligned_cols=26 Identities=31% Similarity=0.399 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...+.+.|.|+||||||+..+.|.-.
T Consensus 33 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl 58 (269)
T PRK13648 33 PKGQWTSIVGHNGSGKSTIAKLMIGI 58 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46788999999999999998888643
No 390
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=77.25 E-value=8.2 Score=46.37 Aligned_cols=60 Identities=8% Similarity=0.145 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001346 1009 RRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQVSFTCFYTDII 1072 (1095)
Q Consensus 1009 ~~~~eae~~l~~leeE~~~Lkeel~~~e~~~~e~e~k~~~~ee~~~k~~~~Lq~~l~~~kksla 1072 (1095)
..+.+.+.+..+++++++.|+.+++.+.++..+++.++++++.+++. |+.++++++.+.+
T Consensus 69 SALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~----Lk~Ql~a~~~~~~ 128 (475)
T PRK13729 69 HATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAA----LAEQVKALGANPV 128 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH----HHHHHHhhhcCCC
Confidence 34444455566667777777777776667777777777777777666 4444555555443
No 391
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=77.15 E-value=1.7 Score=48.65 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=20.7
Q ss_pred CCceEEEEcCCCCCChhhHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAM 314 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il 314 (1095)
...+.+.|.|+||||||+..|.|.
T Consensus 36 ~~Ge~~~i~G~nGsGKSTLl~~l~ 59 (268)
T PRK10419 36 KSGETVALLGRSGCGKSTLARLLV 59 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 356899999999999999888774
No 392
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=77.10 E-value=1.7 Score=47.97 Aligned_cols=26 Identities=27% Similarity=0.243 Sum_probs=21.6
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...+.+.|.|+||||||+..+.+.-.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (253)
T TIGR02323 27 YPGEVLGIVGESGSGKSTLLGCLAGR 52 (253)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35689999999999999988877543
No 393
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=77.10 E-value=2.8 Score=51.58 Aligned_cols=37 Identities=30% Similarity=0.476 Sum_probs=26.8
Q ss_pred HHHHHHhhCC-CceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 282 TAYNEMMGDG-VNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 282 ~Ay~~m~~~~-~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
.....+.... ..+-+|++|.+|+|||++.+.+.+-|-
T Consensus 33 ~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg 70 (519)
T PF03215_consen 33 SWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG 70 (519)
T ss_pred HHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3444444433 356778899999999999999877653
No 394
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=77.07 E-value=1.8 Score=47.62 Aligned_cols=26 Identities=31% Similarity=0.336 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...+.+.|.|+||||||+..|.+.-.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (241)
T PRK14250 27 EGGAIYTIVGPSGAGKSTLIKLINRL 52 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999988887643
No 395
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=77.06 E-value=1.8 Score=45.47 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.7
Q ss_pred EEEcCCCCCChhhHHHHHHHHH
Q 001346 296 IIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 296 IiisGESGAGKTe~~K~il~yL 317 (1095)
|+|.|-+|||||+.++.+-+.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 8999999999999999887654
No 396
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=77.05 E-value=1.8 Score=45.42 Aligned_cols=27 Identities=26% Similarity=0.293 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 24 RAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999888775443
No 397
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=76.91 E-value=2.4 Score=47.36 Aligned_cols=28 Identities=25% Similarity=0.172 Sum_probs=22.4
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
+...++|+|++|+|||..+-+++...+.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~ 62 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQAS 62 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 5688999999999999877766555544
No 398
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=76.90 E-value=1.6 Score=46.82 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCCChhhHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAM 314 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il 314 (1095)
...++|+|++|||||+..|.|.
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~ 46 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIG 46 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 3789999999999999999984
No 399
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=76.89 E-value=1.8 Score=46.94 Aligned_cols=26 Identities=31% Similarity=0.580 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...|.+.|.|++|||||+..+.+.-.
T Consensus 27 ~~G~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 27 KPGETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45688999999999999998888544
No 400
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=76.86 E-value=1.8 Score=46.58 Aligned_cols=26 Identities=27% Similarity=0.440 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...+.+.|.|+||||||+..|.+.-.
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (213)
T TIGR01277 22 ADGEIVAIMGPSGAGKSTLLNLIAGF 47 (213)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 35788999999999999999888644
No 401
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=76.82 E-value=1.8 Score=47.30 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.+.|.|+||||||+..|.+.-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 26 KPGEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 467899999999999999988887554
No 402
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=76.82 E-value=3 Score=52.43 Aligned_cols=54 Identities=22% Similarity=0.392 Sum_probs=39.4
Q ss_pred HHHHcccCCC----CCchhHHHHHHHHHHhh-CCCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 263 ITAYRQKVMD----SPHVYAIADTAYNEMMG-DGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 263 ~~~y~~~~~~----~PHiyavA~~Ay~~m~~-~~~~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
.++|+-+... .+|+.. +...++. ++-.+++|++|+.|.|||++++.+.+.|-+.
T Consensus 7 a~KyRP~~f~divGQe~vv~----~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 7 ARKWRPQTFAEVVGQEHVLT----ALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred HHHhCCCCHHHhcCcHHHHH----HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 3556554433 477764 4444444 4567899999999999999999999988763
No 403
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=76.81 E-value=1.4 Score=46.11 Aligned_cols=26 Identities=38% Similarity=0.440 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
-+..=|.||||||||+..+.+--.|+
T Consensus 32 GeVLgiVGESGSGKtTLL~~is~rl~ 57 (258)
T COG4107 32 GEVLGIVGESGSGKTTLLKCISGRLT 57 (258)
T ss_pred CcEEEEEecCCCcHHhHHHHHhcccC
Confidence 36677899999999987766644444
No 404
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=76.79 E-value=1.3 Score=55.37 Aligned_cols=29 Identities=24% Similarity=0.412 Sum_probs=25.1
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
+..+.|.|.|+||||||+..|.++..+.-
T Consensus 359 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~p 387 (588)
T PRK13657 359 KPGQTVAIVGPTGAGKSTLINLLQRVFDP 387 (588)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCcCC
Confidence 46789999999999999999999876653
No 405
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=76.78 E-value=3 Score=51.92 Aligned_cols=45 Identities=24% Similarity=0.393 Sum_probs=34.8
Q ss_pred CCchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 273 SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 273 ~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
.+|+-..=..++. ..+-.++++++|+.|.|||+++|.+.+.|.+.
T Consensus 21 q~~v~~~L~~~i~---~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~ 65 (559)
T PRK05563 21 QEHITKTLKNAIK---QGKISHAYLFSGPRGTGKTSAAKIFAKAVNCL 65 (559)
T ss_pred cHHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 5777654444433 24568999999999999999999999888654
No 406
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=76.77 E-value=1.8 Score=47.76 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...+.+.|.|+||||||+..+.+.-.
T Consensus 28 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 53 (253)
T PRK14267 28 PQNGVFALMGPSGCGKSTLLRTFNRL 53 (253)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45688999999999999988887644
No 407
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=76.70 E-value=1.9 Score=46.57 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=21.6
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~ 315 (1095)
...+.+.|.|+||||||+..+.|.-
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~i~G 49 (218)
T cd03290 25 PTGQLTMIVGQVGCGKSSLLLAILG 49 (218)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4678999999999999998888753
No 408
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=76.69 E-value=1.9 Score=47.67 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...+.+.|.|+||||||+..+.+.-.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (255)
T PRK11300 29 REQEIVSLIGPNGAGKTTVFNCLTGF 54 (255)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999888644
No 409
>PRK00279 adk adenylate kinase; Reviewed
Probab=76.66 E-value=1.9 Score=46.53 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=21.0
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHH
Q 001346 295 SIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il~yLa 318 (1095)
-|+|.|.+|||||+.++.+-+.+-
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 499999999999999998877654
No 410
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=76.63 E-value=2.7 Score=44.87 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=24.0
Q ss_pred HHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 282 TAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 282 ~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
.|...++... ...+|.|..|+|||.+...++.++
T Consensus 8 ~Ai~~~~~~~--~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 8 EAIQSALSSN--GITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHCTSS--E-EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHcCC--CCEEEECCCCCChHHHHHHHHHHh
Confidence 3444444332 268999999999999999998888
No 411
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=76.61 E-value=1.7 Score=44.82 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=19.7
Q ss_pred EEEEcCCCCCChhhHHHHHHHHH
Q 001346 295 SIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il~yL 317 (1095)
-++|+|.+|||||+..+.+++..
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~~ 24 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTEQ 24 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhcc
Confidence 37899999999999999887653
No 412
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=76.61 E-value=1.9 Score=47.74 Aligned_cols=25 Identities=24% Similarity=0.512 Sum_probs=21.1
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~ 315 (1095)
...+.+.|.|+||||||+..|.+.-
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (252)
T TIGR03005 24 AAGEKVALIGPSGSGKSTILRILMT 48 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3568899999999999998888754
No 413
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=76.58 E-value=2 Score=44.71 Aligned_cols=27 Identities=33% Similarity=0.543 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 356889999999999999888886544
No 414
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=76.57 E-value=2.3 Score=48.02 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=24.9
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001346 295 SIIISGESGAGKTETAKFAMQYLAALG 321 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il~yLa~~~ 321 (1095)
.|.|.|.||||||+.+..++..|...+
T Consensus 3 ~i~i~G~~gSGKTTLi~~Li~~L~~~G 29 (274)
T PRK14493 3 VLSIVGYKATGKTTLVERLVDRLSGRG 29 (274)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 588999999999999999999999865
No 415
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=76.52 E-value=2.8 Score=50.02 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHH
Q 001346 294 QSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~yL 317 (1095)
-.|+|.|++|+|||+.++.+-+.|
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhc
Confidence 589999999999999999886543
No 416
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=76.51 E-value=1.4 Score=49.25 Aligned_cols=39 Identities=21% Similarity=0.198 Sum_probs=29.5
Q ss_pred HHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHhcC
Q 001346 284 YNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1095)
Q Consensus 284 y~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~~ 322 (1095)
..++-.-...+.+.|.|+||||||+..|.++-.+...+|
T Consensus 17 l~~i~~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G 55 (255)
T cd03236 17 LHRLPVPREGQVLGLVGPNGIGKSTALKILAGKLKPNLG 55 (255)
T ss_pred hhcCCCCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCc
Confidence 334432356789999999999999999999887764443
No 417
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=76.50 E-value=2 Score=45.64 Aligned_cols=25 Identities=20% Similarity=0.434 Sum_probs=21.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~ 315 (1095)
...+.+.|.|++|||||+..|.+.-
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (198)
T TIGR01189 24 NAGEALQVTGPNGIGKTTLLRILAG 48 (198)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3568899999999999998888754
No 418
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=76.49 E-value=1.3e+02 Score=33.42 Aligned_cols=71 Identities=20% Similarity=0.259 Sum_probs=34.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001346 995 EQVQALPTALAELQRRVLKAEATLG-------QKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQVSFT 1065 (1095)
Q Consensus 995 e~~~~l~~~l~elq~~~~eae~~l~-------~leeE~~~Lkeel~~~e~~~~e~e~k~~~~ee~~~k~~~~Lq~~l~ 1065 (1095)
.+...|..++..++++...++.++. .++++...+++.+...+....+++...........++...+.++..
T Consensus 89 ~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~ 166 (239)
T COG1579 89 RELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKRE 166 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555444444444 4444445555555555555555555555444444444444444433
No 419
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=76.47 E-value=1.9 Score=48.05 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.+.|.|+||||||+..|.+.-.+
T Consensus 37 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 37 AKNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 457899999999999999999886543
No 420
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=76.46 E-value=1.9 Score=47.48 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.+.|.|+||||||+..+.+.-.+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 27 KPGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356889999999999999988876543
No 421
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=76.46 E-value=2.3 Score=49.01 Aligned_cols=38 Identities=26% Similarity=0.428 Sum_probs=28.2
Q ss_pred HHHHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 280 ADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 280 A~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
.+.||-.+.-. ...+|+|+|+.|||||+..+.+|.++-
T Consensus 131 ~~~ayL~~~ie-~~~siii~G~t~sGKTt~lnall~~Ip 168 (312)
T COG0630 131 EQAAYLWLAIE-ARKSIIICGGTASGKTTLLNALLDFIP 168 (312)
T ss_pred HHHHHHHHHHH-cCCcEEEECCCCCCHHHHHHHHHHhCC
Confidence 34455443322 357899999999999999999988765
No 422
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=76.46 E-value=1.9 Score=47.73 Aligned_cols=26 Identities=23% Similarity=0.224 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...+.+.|.|+||||||+..|.+.-.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (254)
T PRK14273 31 LKNSITALIGPSGCGKSTFLRTLNRM 56 (254)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 35689999999999999999888643
No 423
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=76.41 E-value=1.9 Score=47.29 Aligned_cols=25 Identities=32% Similarity=0.512 Sum_probs=21.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~ 315 (1095)
...+.+.|.|+||||||+..+.+.-
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (242)
T cd03295 25 AKGEFLVLIGPSGSGKTTTMKMINR 49 (242)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4568899999999999998887743
No 424
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=76.39 E-value=2 Score=47.19 Aligned_cols=27 Identities=19% Similarity=0.286 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.+.|.|+||||||+..|.++-.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (237)
T TIGR00968 24 PTGSLVALLGPSGSGKSTLLRIIAGLE 50 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999888886443
No 425
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=76.38 E-value=1.9 Score=46.49 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.7
Q ss_pred EEEcCCCCCChhhHHHHHHHHH
Q 001346 296 IIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 296 IiisGESGAGKTe~~K~il~yL 317 (1095)
|+|.|.+|||||+.++.+-+.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 8999999999999999987654
No 426
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=76.36 E-value=1.9 Score=46.61 Aligned_cols=27 Identities=30% Similarity=0.414 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.+.|.|++|||||+..+.++-.+
T Consensus 32 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 32 NAGECVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456889999999999999988886543
No 427
>PRK09183 transposase/IS protein; Provisional
Probab=76.35 E-value=2.3 Score=47.62 Aligned_cols=28 Identities=32% Similarity=0.309 Sum_probs=23.1
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
+.+.++|.|++|+|||+.+..+...++.
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~ 128 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVR 128 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3567999999999999999988665554
No 428
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=76.35 E-value=1.4 Score=55.12 Aligned_cols=27 Identities=37% Similarity=0.518 Sum_probs=24.7
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
++.+.+.|.|+||||||+..+.++.++
T Consensus 374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 374 PAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467999999999999999999999876
No 429
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=76.31 E-value=1.6 Score=47.10 Aligned_cols=44 Identities=32% Similarity=0.456 Sum_probs=31.8
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHHhcCCCcchHHHHHhhhHHHHHhc
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYLAALGGGSEGIEYEILQTNHILEAFG 342 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yLa~~~~~~~~ie~~il~snpiLEAFG 342 (1095)
+=.|+|.|.=|+|||+.++.+=+.|-+ .+..++..=||+|+-|=
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~------~~~~E~vednp~L~~FY 47 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGF------KVFYELVEDNPFLDLFY 47 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCC------ceeeecccCChHHHHHH
Confidence 458999999999999999998887762 22233444556666654
No 430
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=76.28 E-value=1.9 Score=48.40 Aligned_cols=28 Identities=29% Similarity=0.318 Sum_probs=23.7
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
...+.+.|.|.||||||+..|.|.-.+.
T Consensus 48 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 75 (271)
T PRK14238 48 HENEVTAIIGPSGCGKSTYIKTLNRMVE 75 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 3568899999999999999999986553
No 431
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=76.28 E-value=3 Score=49.14 Aligned_cols=41 Identities=32% Similarity=0.434 Sum_probs=33.6
Q ss_pred HHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHhcC
Q 001346 282 TAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1095)
Q Consensus 282 ~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~~ 322 (1095)
.++...+++..+-.|+|.|.+|+|||.++|++++-|-..+.
T Consensus 31 ~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~ 71 (366)
T COG1474 31 SFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSA 71 (366)
T ss_pred HHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhc
Confidence 34666667776667999999999999999999998887544
No 432
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=76.21 E-value=3.1 Score=53.80 Aligned_cols=52 Identities=19% Similarity=0.402 Sum_probs=37.9
Q ss_pred HHHcccCCC----CCchhHHHHHHHHHHhh-CCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 264 TAYRQKVMD----SPHVYAIADTAYNEMMG-DGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 264 ~~y~~~~~~----~PHiyavA~~Ay~~m~~-~~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
++||-.... ..||-.. +++++. .+-.+++||+|+.|.|||++++.+.+.|-+
T Consensus 8 eKyRP~tFddIIGQe~Iv~~----LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnc 64 (944)
T PRK14949 8 RKWRPATFEQMVGQSHVLHA----LTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC 64 (944)
T ss_pred HHhCCCCHHHhcCcHHHHHH----HHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccC
Confidence 456544433 4776643 444444 467888999999999999999999998865
No 433
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=76.20 E-value=1.9 Score=47.75 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.+.|.|+||||||+..+.+.-.+
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 53 (254)
T PRK10418 27 QRGRVLALVGGSGSGKSLTCAAALGIL 53 (254)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999888876543
No 434
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=76.20 E-value=2 Score=46.04 Aligned_cols=27 Identities=15% Similarity=0.238 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 31 KPGEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred CCCcEEEEECCCCCCHHHHHHHhcccC
Confidence 467899999999999999888876544
No 435
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=76.08 E-value=2.1 Score=44.48 Aligned_cols=27 Identities=26% Similarity=0.465 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 457899999999999999888775543
No 436
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=76.08 E-value=2 Score=44.31 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...+.+.|.|.||||||+..+.+.-.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999999888643
No 437
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=76.08 E-value=4.3 Score=42.05 Aligned_cols=34 Identities=21% Similarity=0.275 Sum_probs=26.5
Q ss_pred hCCCceEEEEcCCCCCChhhHHHHHHHHHHHhcC
Q 001346 289 GDGVNQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1095)
Q Consensus 289 ~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~~ 322 (1095)
.++-+|++|+.|.+|+||++.++.+.+.|..-..
T Consensus 15 ~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~ 48 (162)
T PF13177_consen 15 SGRLPHALLFHGPSGSGKKTLALAFARALLCSNP 48 (162)
T ss_dssp CTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-
T ss_pred cCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCC
Confidence 4567999999999999999999999988876543
No 438
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=76.08 E-value=4.3 Score=48.90 Aligned_cols=30 Identities=33% Similarity=0.413 Sum_probs=26.2
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
..+..|++.|..|+|||+++..+..+|...
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 346789999999999999999998888764
No 439
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=76.07 E-value=2 Score=45.63 Aligned_cols=27 Identities=26% Similarity=0.198 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.+.|.|++|||||+..|.+.-.+
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999888875433
No 440
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=76.04 E-value=1.6 Score=54.26 Aligned_cols=28 Identities=21% Similarity=0.491 Sum_probs=25.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
++.+.|.|.|+||||||+..|.++..+.
T Consensus 364 ~~Ge~i~IvG~sGsGKSTLlklL~gl~~ 391 (576)
T TIGR02204 364 RPGETVALVGPSGAGKSTLFQLLLRFYD 391 (576)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 5789999999999999999999987654
No 441
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=76.03 E-value=3.4 Score=47.90 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=31.9
Q ss_pred HHHHHHh--hCCCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 282 TAYNEMM--GDGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 282 ~Ay~~m~--~~~~~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
.+|+.+. .++-+++++++|.+|.|||..++.+-+.|.+.
T Consensus 8 ~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~ 48 (325)
T PRK08699 8 EQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLCE 48 (325)
T ss_pred HHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcCC
Confidence 4455555 45789999999999999999999998887653
No 442
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=76.02 E-value=2 Score=45.83 Aligned_cols=26 Identities=19% Similarity=0.443 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...+.+.|.|++|||||+..+.++..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 24 AAGEALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999998887643
No 443
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=76.01 E-value=2.7 Score=42.94 Aligned_cols=31 Identities=26% Similarity=0.280 Sum_probs=23.1
Q ss_pred HHHHhhCCCceEEEEcCCCCCChhhHHHHHH
Q 001346 284 YNEMMGDGVNQSIIISGESGAGKTETAKFAM 314 (1095)
Q Consensus 284 y~~m~~~~~~QsIiisGESGAGKTe~~K~il 314 (1095)
.+.+....+.-.|+|.|.+|||||+..+.+.
T Consensus 5 ~~~~~~~~~~~~v~i~G~~g~GKStLl~~l~ 35 (173)
T cd04155 5 LRKLRKSSEEPRILILGLDNAGKTTILKQLA 35 (173)
T ss_pred HHHhhccCCccEEEEEccCCCCHHHHHHHHh
Confidence 3444444556779999999999998877663
No 444
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=76.00 E-value=1.6 Score=54.25 Aligned_cols=28 Identities=18% Similarity=0.456 Sum_probs=24.6
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
+..+.|.|.|+||||||+..|.++..+-
T Consensus 356 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~ 383 (571)
T TIGR02203 356 EPGETVALVGRSGSGKSTLVNLIPRFYE 383 (571)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 5679999999999999999999987654
No 445
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=75.98 E-value=33 Score=38.20 Aligned_cols=54 Identities=22% Similarity=0.290 Sum_probs=22.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001346 998 QALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEE 1051 (1095)
Q Consensus 998 ~~l~~~l~elq~~~~eae~~l~~leeE~~~Lkeel~~~e~~~~e~e~k~~~~ee 1051 (1095)
..+..+++.++......+..+...+++++.|+++++..+....++.--|..|.+
T Consensus 59 ~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~ 112 (251)
T PF11932_consen 59 RQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMID 112 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444443333333333
No 446
>PRK06851 hypothetical protein; Provisional
Probab=75.91 E-value=2.9 Score=49.09 Aligned_cols=31 Identities=29% Similarity=0.417 Sum_probs=27.0
Q ss_pred CCCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 290 DGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 290 ~~~~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
...++.+||+|-+|+|||+.+|.+.+.+...
T Consensus 27 ~~~~~~~il~G~pGtGKStl~~~i~~~~~~~ 57 (367)
T PRK06851 27 DGANRIFILKGGPGTGKSTLMKKIGEEFLEK 57 (367)
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4578999999999999999999998887653
No 447
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=75.90 E-value=2.1 Score=46.26 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.+.|.|.+|||||+..+.+.-.+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 28 KPGEKVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 457889999999999999888876543
No 448
>PRK13949 shikimate kinase; Provisional
Probab=75.89 E-value=2.1 Score=44.64 Aligned_cols=24 Identities=38% Similarity=0.443 Sum_probs=21.2
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHH
Q 001346 295 SIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il~yLa 318 (1095)
.|+|.|..|||||+.++.+-+.|-
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 599999999999999998877654
No 449
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=75.86 E-value=2 Score=47.36 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=21.6
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~ 315 (1095)
...+.+.|.|+||||||+..+.|.-
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14240 27 EENQVTALIGPSGCGKSTFLRTLNR 51 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3568899999999999999988864
No 450
>PRK14532 adenylate kinase; Provisional
Probab=75.84 E-value=1.9 Score=45.27 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.5
Q ss_pred EEEEcCCCCCChhhHHHHHHHHH
Q 001346 295 SIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il~yL 317 (1095)
.|+|.|.+|||||+.++.+-+.+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999997655
No 451
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=75.79 E-value=2 Score=48.18 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...+.+.|.|+||||||+..+.+.-.
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (271)
T PRK13632 33 NEGEYVAILGHNGSGKSTISKILTGL 58 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999988877544
No 452
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=75.76 E-value=2 Score=48.71 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...+.+.|.|+||||||+..|.+.-.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~L~Gl 56 (286)
T PRK13646 31 EQGKYYAIVGQTGSGKSTLIQNINAL 56 (286)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999999988644
No 453
>PRK10865 protein disaggregation chaperone; Provisional
Probab=75.72 E-value=2.7 Score=54.90 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=22.8
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 294 QSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
.++++.|++|+|||+.++.+-+++.
T Consensus 599 ~~~Lf~Gp~G~GKT~lA~aLa~~l~ 623 (857)
T PRK10865 599 GSFLFLGPTGVGKTELCKALANFMF 623 (857)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhh
Confidence 6899999999999999999988774
No 454
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=75.71 E-value=2.1 Score=46.34 Aligned_cols=26 Identities=27% Similarity=0.278 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...+.+.|.|++|||||+..+.++-.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 24 PKNSVYGLLGPNGAGKSTLLKMITGI 49 (223)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999988887643
No 455
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=75.71 E-value=2 Score=46.83 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=21.4
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~ 315 (1095)
...+.+.|.|++|||||+..|.+.-
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G 47 (232)
T PRK10771 23 ERGERVAILGPSGAGKSTLLNLIAG 47 (232)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4578999999999999998887753
No 456
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=75.70 E-value=2.4 Score=49.87 Aligned_cols=28 Identities=21% Similarity=0.215 Sum_probs=23.9
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
+...|++.|.+|+|||+++..+..+++.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~ 163 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVM 163 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999998876653
No 457
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=75.69 E-value=3 Score=53.39 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=31.1
Q ss_pred HHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 282 TAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 282 ~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.+...++..+++|.|++|+|||+.++.+-+++
T Consensus 41 ~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~ 76 (725)
T PRK13341 41 RLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT 76 (725)
T ss_pred HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 567777777888899999999999999999998765
No 458
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=75.64 E-value=24 Score=38.08 Aligned_cols=57 Identities=21% Similarity=0.258 Sum_probs=33.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001346 997 VQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMW 1053 (1095)
Q Consensus 997 ~~~l~~~l~elq~~~~eae~~l~~leeE~~~Lkeel~~~e~~~~e~e~k~~~~ee~~ 1053 (1095)
...|..++++++..+.+.+..+.+++.|+..|.+.+..+.-+...++.++.+++...
T Consensus 151 keeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~ 207 (290)
T COG4026 151 KEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGV 207 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccc
Confidence 444555666666666666666666666666666666655555556666666555543
No 459
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=75.64 E-value=8.2 Score=43.89 Aligned_cols=67 Identities=25% Similarity=0.315 Sum_probs=51.3
Q ss_pred HHHHHHHHHHh-hCCCceEEEEcCCCCCChhhHHHHHHHHHHHhcC---------------C------------------
Q 001346 278 AIADTAYNEMM-GDGVNQSIIISGESGAGKTETAKFAMQYLAALGG---------------G------------------ 323 (1095)
Q Consensus 278 avA~~Ay~~m~-~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~~---------------~------------------ 323 (1095)
++|....+.+. .+++.+-|=|+|..|||||+..-.+...|...+- +
T Consensus 35 ~~a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~v 114 (323)
T COG1703 35 ALARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGV 114 (323)
T ss_pred hHHHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCe
Confidence 45666666554 4678899999999999999999999888876421 0
Q ss_pred ----------CcchHHHHHhhhHHHHHhccc
Q 001346 324 ----------SEGIEYEILQTNHILEAFGNA 344 (1095)
Q Consensus 324 ----------~~~ie~~il~snpiLEAFGNA 344 (1095)
.+++......+--+|||+|-=
T Consensus 115 FiRs~~srG~lGGlS~at~~~i~~ldAaG~D 145 (323)
T COG1703 115 FIRSSPSRGTLGGLSRATREAIKLLDAAGYD 145 (323)
T ss_pred EEeecCCCccchhhhHHHHHHHHHHHhcCCC
Confidence 136777888888999999953
No 460
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=75.57 E-value=2.6 Score=42.99 Aligned_cols=27 Identities=37% Similarity=0.428 Sum_probs=23.4
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHHhcC
Q 001346 296 IIISGESGAGKTETAKFAMQYLAALGG 322 (1095)
Q Consensus 296 IiisGESGAGKTe~~K~il~yLa~~~~ 322 (1095)
|.++|.+|||||+.++.+..++...+.
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~ 28 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGK 28 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCC
Confidence 788999999999999999988876543
No 461
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=75.53 E-value=2.1 Score=46.18 Aligned_cols=26 Identities=23% Similarity=0.528 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...+.+.|.|+||||||+..|.+.-.
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 35 DAGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 35688999999999999988887543
No 462
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.50 E-value=3.5 Score=51.68 Aligned_cols=53 Identities=19% Similarity=0.343 Sum_probs=37.8
Q ss_pred HHHcccCCC----CCchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 264 TAYRQKVMD----SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 264 ~~y~~~~~~----~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
++|+-+... ..|+-..-..++ ...+-.+++||+|..|.|||++++.+.+.|-+
T Consensus 8 rKYRPqtFddVIGQe~vv~~L~~al---~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 8 RKWRPRDFTTLVGQEHVVRALTHAL---EQQRLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHH---HhCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 455544433 467664333332 24556789999999999999999999999876
No 463
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=75.49 E-value=3.9 Score=48.66 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=24.3
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 294 QSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
..++|+|.+|+|||..++.+.+++...
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~ 163 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILEN 163 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 579999999999999999999988764
No 464
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=75.49 E-value=1.9 Score=48.12 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...+.+.|.|+||||||+..+.+.-.
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T PRK10575 35 PAGKVTGLIGHNGSGKSTLLKMLGRH 60 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 35688999999999999999888643
No 465
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=75.46 E-value=2.1 Score=47.15 Aligned_cols=25 Identities=24% Similarity=0.314 Sum_probs=21.1
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~ 315 (1095)
...+.+.|.|+||||||+..+.+.-
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (246)
T PRK14269 26 EQNKITALIGASGCGKSTFLRCFNR 50 (246)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3568899999999999998887753
No 466
>PRK08181 transposase; Validated
Probab=75.46 E-value=2.4 Score=47.72 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=25.6
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yLa~~~ 321 (1095)
+.+.++|.|.+|+|||..+..+.+.++..+
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g 134 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENG 134 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcC
Confidence 446799999999999999999988887644
No 467
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=75.42 E-value=2 Score=48.19 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=21.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~ 315 (1095)
...+.+.|.|+||||||+..|.+.-
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (271)
T PRK13638 25 SLSPVTGLVGANGCGKSTLFMNLSG 49 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcC
Confidence 3568899999999999998887753
No 468
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=75.41 E-value=3.6 Score=49.03 Aligned_cols=25 Identities=32% Similarity=0.519 Sum_probs=22.1
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
+..|++.|.+|+|||+.++.+-+.+
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 5899999999999999999886654
No 469
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=75.41 E-value=2.1 Score=47.52 Aligned_cols=27 Identities=19% Similarity=0.404 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.+.|.|++|||||+..|.|.-.+
T Consensus 28 ~~Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 28 KPGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999999886544
No 470
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=75.40 E-value=2.1 Score=48.92 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.+.|.|.+|||||+..|.++-.+
T Consensus 28 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 54 (303)
T TIGR01288 28 ARGECFGLLGPNGAGKSTIARMLLGMI 54 (303)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999999886543
No 471
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=75.38 E-value=4.1 Score=47.20 Aligned_cols=31 Identities=26% Similarity=0.447 Sum_probs=26.6
Q ss_pred hCCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 289 GDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 289 ~~~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
..+.++++++.|++|.|||++++.+.+.|..
T Consensus 32 ~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~ 62 (355)
T TIGR02397 32 NGRIAHAYLFSGPRGTGKTSIARIFAKALNC 62 (355)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3456789999999999999999999888764
No 472
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=75.37 E-value=2.1 Score=47.78 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...+.+.|.|++|||||+..|.+.-.
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (261)
T PRK14263 32 RKNEITGFIGPSGCGKSTVLRSLNRM 57 (261)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcc
Confidence 35689999999999999998887543
No 473
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.37 E-value=3.3 Score=51.62 Aligned_cols=44 Identities=25% Similarity=0.420 Sum_probs=33.7
Q ss_pred CCchhHHHHHHHHHHhh-CCCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 273 SPHVYAIADTAYNEMMG-DGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 273 ~PHiyavA~~Ay~~m~~-~~~~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
..||-.. .++++. .+-++++|++|..|.|||++++.+.+.|-+.
T Consensus 18 q~~i~~~----L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 62 (584)
T PRK14952 18 QEHVTEP----LSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCA 62 (584)
T ss_pred cHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 4666654 334333 4678899999999999999999999887754
No 474
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=75.32 E-value=1.7 Score=48.44 Aligned_cols=37 Identities=19% Similarity=0.122 Sum_probs=29.5
Q ss_pred HHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 282 TAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 282 ~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
+|...|.--++.|-++|.|++|+|||+.++.+.+.+.
T Consensus 5 ~~id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~ 41 (249)
T cd01128 5 RVVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAIT 41 (249)
T ss_pred hheeeecccCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 4444555667889999999999999998888876654
No 475
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=75.28 E-value=2.1 Score=47.25 Aligned_cols=25 Identities=24% Similarity=0.326 Sum_probs=21.4
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~ 315 (1095)
...+.+.|.|.||||||+..+.|.-
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (252)
T PRK14255 29 NQNEITALIGPSGCGKSTYLRTLNR 53 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3578999999999999998888853
No 476
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=75.27 E-value=2.1 Score=46.86 Aligned_cols=27 Identities=19% Similarity=0.458 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.+.|.|++|||||+..+.|.-.+
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 27 PPGKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred cCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 457899999999999999999887544
No 477
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=75.16 E-value=3.6 Score=50.69 Aligned_cols=54 Identities=26% Similarity=0.357 Sum_probs=38.2
Q ss_pred HHHHcccCCC----CCchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 263 ITAYRQKVMD----SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 263 ~~~y~~~~~~----~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
...||-...+ .+|+-..-..++ ...+-.++++++|+.|.|||++++.+.+.|..
T Consensus 5 ~~KyRP~~fdeiiGqe~v~~~L~~~I---~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c 62 (535)
T PRK08451 5 ALKYRPKHFDELIGQESVSKTLSLAL---DNNRLAHAYLFSGLRGSGKTSSARIFARALVC 62 (535)
T ss_pred HHHHCCCCHHHccCcHHHHHHHHHHH---HcCCCCeeEEEECCCCCcHHHHHHHHHHHhcC
Confidence 3556655443 477643333332 34567889999999999999999999999864
No 478
>PRK06835 DNA replication protein DnaC; Validated
Probab=75.16 E-value=3.9 Score=47.45 Aligned_cols=30 Identities=27% Similarity=0.418 Sum_probs=25.9
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yLa~~~ 321 (1095)
....++|.|.+|+|||+.+..|.+.+...+
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~g 211 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDRG 211 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHCC
Confidence 348899999999999999999999887643
No 479
>PRK10867 signal recognition particle protein; Provisional
Probab=75.15 E-value=4.5 Score=48.68 Aligned_cols=30 Identities=37% Similarity=0.417 Sum_probs=26.3
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
..+..|+++|..|||||+++-.+-.||...
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 346789999999999999999998888876
No 480
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=75.14 E-value=2.8 Score=50.35 Aligned_cols=29 Identities=31% Similarity=0.385 Sum_probs=25.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
+.+..|+++|.+|||||+++-.+..||..
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~ 125 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKK 125 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 34678999999999999999999888764
No 481
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=75.13 E-value=2.1 Score=47.56 Aligned_cols=26 Identities=31% Similarity=0.262 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...+.+.|.|+||||||+..|.+.-.
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (258)
T PRK11701 30 YPGEVLGIVGESGSGKTTLLNALSAR 55 (258)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999988887643
No 482
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=75.12 E-value=2.2 Score=46.78 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.+.|.|++|||||+..|.+.-.+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 52 (242)
T TIGR03411 26 DPGELRVIIGPNGAGKTTMMDVITGKT 52 (242)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999888876543
No 483
>PLN02200 adenylate kinase family protein
Probab=75.10 E-value=2.7 Score=46.34 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=22.6
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
..--|+|.|.+|||||+.++.+.+.+
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999987765
No 484
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=75.07 E-value=2.2 Score=47.44 Aligned_cols=27 Identities=30% Similarity=0.298 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.+.|.|++|||||+..+.|.-.+
T Consensus 36 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 36 PENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 357889999999999999988886543
No 485
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=75.07 E-value=2.1 Score=44.67 Aligned_cols=22 Identities=23% Similarity=0.524 Sum_probs=19.1
Q ss_pred CceEEEEcCCCCCChhhHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFA 313 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~i 313 (1095)
.--|+++.|.||||||+..|.+
T Consensus 36 aGECvvL~G~SG~GKStllr~L 57 (235)
T COG4778 36 AGECVVLHGPSGSGKSTLLRSL 57 (235)
T ss_pred CccEEEeeCCCCCcHHHHHHHH
Confidence 4579999999999999887766
No 486
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=75.06 E-value=2.2 Score=46.24 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 38 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 38 HPGEVTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 467899999999999999988886443
No 487
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=75.05 E-value=2.4 Score=44.22 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
+...||+|++|+|||+....|+-.|
T Consensus 19 ~g~~vi~G~Ng~GKStil~ai~~~L 43 (202)
T PF13476_consen 19 PGLNVIYGPNGSGKSTILEAIRYAL 43 (202)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 5678999999999999997775444
No 488
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=75.03 E-value=2.2 Score=46.35 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=22.1
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
..+.+.|.|++|||||+..|.+...+
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 46789999999999999999886543
No 489
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=75.03 E-value=2.2 Score=43.19 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...+.+.|.|++|||||+..+.+...
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 35688899999999999988887543
No 490
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=75.02 E-value=2.2 Score=47.38 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...+.+.|.|+||||||+..+.+.-.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~i~G~ 54 (257)
T PRK10619 29 NAGDVISIIGSSGSGKSTFLRCINFL 54 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35678899999999999998888644
No 491
>CHL00181 cbbX CbbX; Provisional
Probab=75.01 E-value=2.5 Score=48.05 Aligned_cols=27 Identities=33% Similarity=0.463 Sum_probs=23.9
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001346 295 SIIISGESGAGKTETAKFAMQYLAALG 321 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il~yLa~~~ 321 (1095)
.|++.|++|+|||+.++.+-+++...+
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~~~g 87 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYKLG 87 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 489999999999999999988877654
No 492
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=74.98 E-value=3.4 Score=51.82 Aligned_cols=52 Identities=23% Similarity=0.452 Sum_probs=37.1
Q ss_pred HHHcccCCC----CCchhHHHHHHHHHHhh-CCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 264 TAYRQKVMD----SPHVYAIADTAYNEMMG-DGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 264 ~~y~~~~~~----~PHiyavA~~Ay~~m~~-~~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
++||-+... .+|+- ++..++.. .+-.+++|++|..|.|||++++.+-+.|-+
T Consensus 7 rKyRPktFddVIGQe~vv----~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 7 RKYRPRNFNELVGQNHVS----RALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred HHhCCCCHHHhcCcHHHH----HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 455544432 46763 44444444 445789999999999999999999988864
No 493
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=74.96 E-value=4 Score=42.58 Aligned_cols=38 Identities=16% Similarity=0.158 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHHHHH
Q 001346 276 VYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFA 313 (1095)
Q Consensus 276 iyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i 313 (1095)
++.--..++..|--..+.--|+|.|.+|||||+..+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~ki~ilG~~~~GKStLi~~l 39 (190)
T cd00879 2 IFDWFYNVLSSLGLYNKEAKILFLGLDNAGKTTLLHML 39 (190)
T ss_pred hHHHHHHHHHHhhcccCCCEEEEECCCCCCHHHHHHHH
Confidence 33333446666655566778999999999999987755
No 494
>PRK13975 thymidylate kinase; Provisional
Probab=74.87 E-value=2.3 Score=44.81 Aligned_cols=24 Identities=38% Similarity=0.565 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHH
Q 001346 294 QSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~yL 317 (1095)
.-|+|.|-.|||||+.++.+-+.|
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999887766
No 495
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=74.83 E-value=2.3 Score=45.50 Aligned_cols=27 Identities=30% Similarity=0.457 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 32 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 32 KAGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 457899999999999999999887654
No 496
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=74.80 E-value=9.6 Score=31.88 Aligned_cols=48 Identities=29% Similarity=0.389 Sum_probs=37.1
Q ss_pred CcEEEEEcCCCCEEEEEEEEeeC-CeEEEEecC-CeEEEEeCCCcccCCC
Q 001346 158 KLRVWCRLEDGKWESGMIQSTSG-DEAFVLLSN-GNVVKVSTGELLPANP 205 (1095)
Q Consensus 158 ~~~vW~~~~~~~~~~~~v~~~~~-~~~~v~~~~-g~~~~v~~~~~~~~np 205 (1095)
|..|=++..++.|..|+|++..+ +...|...| |....|+.+++.+..+
T Consensus 6 G~~~~a~~~d~~wyra~I~~~~~~~~~~V~f~D~G~~~~v~~~~l~~l~~ 55 (57)
T smart00333 6 GDKVAARWEDGEWYRARIIKVDGEQLYEVFFIDYGNEEVVPPSDLRPLPE 55 (57)
T ss_pred CCEEEEEeCCCCEEEEEEEEECCCCEEEEEEECCCccEEEeHHHeecCCC
Confidence 44454444578899999999988 777888766 9999999888877654
No 497
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=74.78 E-value=2.2 Score=48.67 Aligned_cols=27 Identities=30% Similarity=0.372 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.+.|.|++|||||+..|.++-.+
T Consensus 17 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 43 (302)
T TIGR01188 17 REGEVFGFLGPNGAGKTTTIRMLTTLL 43 (302)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356888999999999999999887544
No 498
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=74.77 E-value=2.8 Score=46.00 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=0.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
.....++|.|++|+|||+.+..++.-++
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~ 49 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFL 49 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH
No 499
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=74.76 E-value=1.6 Score=54.67 Aligned_cols=32 Identities=25% Similarity=0.440 Sum_probs=0.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHHhcC
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yLa~~~~ 322 (1095)
+..|.|.|.|+||||||+..|.++..+.--+|
T Consensus 365 ~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G 396 (592)
T PRK10790 365 PSRGFVALVGHTGSGKSTLASLLMGYYPLTEG 396 (592)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCCCCc
No 500
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=74.72 E-value=2.3 Score=47.63 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=0.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAM 314 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il 314 (1095)
...+.+.|.|+||||||+..+.+.
T Consensus 44 ~~Ge~~~I~G~nGsGKSTLl~~l~ 67 (267)
T PRK14237 44 EKNKITALIGPSGSGKSTYLRSLN 67 (267)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
Done!