Query 001346
Match_columns 1095
No_of_seqs 401 out of 2315
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 23:24:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001346.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001346hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dfs_A Myosin-5A; myosin-V, in 100.0 1E-214 5E-219 2028.5 84.9 810 155-967 7-863 (1080)
2 1kk8_A Myosin heavy chain, str 100.0 6E-206 2E-210 1894.6 76.1 764 158-928 31-827 (837)
3 1w7j_A Myosin VA; motor protei 100.0 1E-203 4E-208 1865.7 72.0 751 156-909 8-794 (795)
4 4anj_A Unconventional myosin-V 100.0 5E-203 2E-207 1897.3 68.6 764 157-927 3-818 (1052)
5 1i84_S Smooth muscle myosin he 100.0 1E-201 5E-206 1946.8 75.6 771 158-929 31-841 (1184)
6 4db1_A Myosin-7; S1DC, cardiac 100.0 6E-200 2E-204 1824.4 68.5 727 150-883 28-781 (783)
7 2ycu_A Non muscle myosin 2C, a 100.0 1E-198 4E-203 1869.8 69.5 769 158-928 8-809 (995)
8 1g8x_A Myosin II heavy chain f 100.0 7E-196 3E-200 1840.8 83.1 721 158-891 32-771 (1010)
9 1w9i_A Myosin II heavy chain; 100.0 1E-197 4E-202 1798.5 62.2 716 157-886 31-765 (770)
10 2v26_A Myosin VI; calmodulin-b 100.0 4E-197 1E-201 1807.9 66.4 731 160-897 2-784 (784)
11 1lkx_A Myosin IE heavy chain; 100.0 2E-190 7E-195 1726.5 58.2 663 208-883 7-696 (697)
12 2dfs_A Myosin-5A; myosin-V, in 99.2 1.1E-10 3.8E-15 150.2 19.8 204 867-1070 797-1038(1080)
13 2ix7_C Myosin-5A; contractIle 99.0 4.4E-10 1.5E-14 94.7 6.9 52 882-933 4-56 (58)
14 1n2d_C IQ2 and IQ3 motifs from 98.7 2.7E-08 9.1E-13 80.5 7.0 46 905-963 2-47 (48)
15 2ix7_C Myosin-5A; contractIle 98.7 4.1E-08 1.4E-12 82.6 7.9 52 904-970 3-55 (58)
16 1n2d_C IQ2 and IQ3 motifs from 98.6 3.7E-08 1.3E-12 79.6 5.5 42 884-925 4-47 (48)
17 1i84_S Smooth muscle myosin he 98.6 4.5E-07 1.5E-11 118.9 16.6 56 897-964 783-838 (1184)
18 1wdc_A Scallop myosin; calcium 97.3 0.00037 1.3E-08 59.6 6.7 47 906-964 6-52 (64)
19 2bl0_A Major plasmodial myosin 97.3 0.0003 1E-08 60.0 5.6 47 906-964 4-50 (63)
20 1kk8_A Myosin heavy chain, str 97.2 0.00036 1.2E-08 87.6 7.5 59 898-968 771-830 (837)
21 1wdc_A Scallop myosin; calcium 97.2 0.00037 1.3E-08 59.6 5.2 47 881-927 3-53 (64)
22 2bl0_A Major plasmodial myosin 97.0 0.00053 1.8E-08 58.4 4.3 44 884-927 5-51 (63)
23 3gn4_A Myosin-VI; unconvention 96.9 0.0035 1.2E-07 61.8 10.1 53 891-964 13-65 (148)
24 1jbk_A CLPB protein; beta barr 95.1 0.01 3.6E-07 59.3 3.2 32 288-319 38-69 (195)
25 2p65_A Hypothetical protein PF 94.6 0.035 1.2E-06 55.4 5.8 64 255-319 5-69 (187)
26 4eun_A Thermoresistant glucoki 93.5 0.038 1.3E-06 57.1 3.5 33 285-317 21-53 (200)
27 3uie_A Adenylyl-sulfate kinase 93.4 0.056 1.9E-06 55.8 4.6 30 289-318 21-50 (200)
28 3c8u_A Fructokinase; YP_612366 93.4 0.039 1.3E-06 57.5 3.3 30 290-319 19-48 (208)
29 1ex7_A Guanylate kinase; subst 93.3 0.036 1.2E-06 57.4 2.8 22 296-317 4-25 (186)
30 1kgd_A CASK, peripheral plasma 92.7 0.047 1.6E-06 55.5 2.7 25 293-317 5-29 (180)
31 3ec2_A DNA replication protein 92.7 0.085 2.9E-06 53.2 4.7 28 292-319 37-64 (180)
32 2w58_A DNAI, primosome compone 92.5 0.1 3.5E-06 53.6 5.0 28 293-320 54-81 (202)
33 3bos_A Putative DNA replicatio 92.3 0.12 4.2E-06 53.8 5.4 37 283-319 42-78 (242)
34 1lvg_A Guanylate kinase, GMP k 92.3 0.058 2E-06 55.9 2.8 26 293-318 4-29 (198)
35 1qhx_A CPT, protein (chloramph 92.2 0.06 2E-06 54.0 2.7 25 293-317 3-27 (178)
36 3a00_A Guanylate kinase, GMP k 92.2 0.048 1.7E-06 55.7 2.0 25 294-318 2-26 (186)
37 1zp6_A Hypothetical protein AT 92.1 0.065 2.2E-06 54.4 2.9 29 287-315 3-31 (191)
38 2eyu_A Twitching motility prot 92.0 0.14 4.7E-06 55.7 5.4 37 283-320 16-52 (261)
39 2kxw_B Sodium channel protein 92.0 0.073 2.5E-06 37.4 2.0 21 881-901 4-24 (27)
40 2l53_B CAM, voltage-gated sodi 91.7 0.09 3.1E-06 38.1 2.3 22 882-903 5-26 (31)
41 2qor_A Guanylate kinase; phosp 91.7 0.067 2.3E-06 55.4 2.4 27 291-317 10-36 (204)
42 3tau_A Guanylate kinase, GMP k 91.5 0.07 2.4E-06 55.6 2.4 27 291-317 6-32 (208)
43 3tr0_A Guanylate kinase, GMP k 91.4 0.086 2.9E-06 54.0 2.9 26 292-317 6-31 (205)
44 3kb2_A SPBC2 prophage-derived 91.4 0.097 3.3E-06 51.9 3.2 24 295-318 3-26 (173)
45 2kjq_A DNAA-related protein; s 91.3 0.13 4.5E-06 50.9 4.1 28 292-319 35-62 (149)
46 3t61_A Gluconokinase; PSI-biol 91.3 0.096 3.3E-06 53.9 3.1 24 294-317 19-42 (202)
47 1zuh_A Shikimate kinase; alpha 91.3 0.11 3.6E-06 51.9 3.3 26 293-318 7-32 (168)
48 3vaa_A Shikimate kinase, SK; s 91.2 0.11 3.8E-06 53.5 3.5 26 292-317 24-49 (199)
49 2l53_B CAM, voltage-gated sodi 91.1 0.1 3.6E-06 37.8 2.2 21 944-964 6-26 (31)
50 1rz3_A Hypothetical protein rb 91.1 0.17 5.7E-06 52.3 4.8 32 291-322 20-51 (201)
51 1knq_A Gluconate kinase; ALFA/ 90.9 0.14 4.9E-06 51.1 3.9 26 292-317 7-32 (175)
52 1kht_A Adenylate kinase; phosp 90.9 0.11 3.9E-06 52.3 3.1 26 293-318 3-28 (192)
53 1znw_A Guanylate kinase, GMP k 90.8 0.11 3.6E-06 54.1 2.8 27 291-317 18-44 (207)
54 2j41_A Guanylate kinase; GMP, 90.7 0.093 3.2E-06 53.8 2.4 26 292-317 5-30 (207)
55 3asz_A Uridine kinase; cytidin 90.7 0.12 4.3E-06 53.3 3.3 27 291-317 4-30 (211)
56 1m7g_A Adenylylsulfate kinase; 90.6 0.19 6.5E-06 52.2 4.6 31 288-318 20-50 (211)
57 3iij_A Coilin-interacting nucl 90.5 0.13 4.3E-06 51.9 3.1 26 292-317 10-35 (180)
58 2pez_A Bifunctional 3'-phospho 90.5 0.16 5.4E-06 51.2 3.8 28 292-319 4-31 (179)
59 1s96_A Guanylate kinase, GMP k 90.5 0.11 3.9E-06 54.9 2.8 27 291-317 14-40 (219)
60 2kxw_B Sodium channel protein 90.5 0.14 4.7E-06 36.0 2.2 20 943-962 5-24 (27)
61 1np6_A Molybdopterin-guanine d 90.4 0.15 5.2E-06 52.0 3.6 28 294-321 7-34 (174)
62 1odf_A YGR205W, hypothetical 3 90.4 0.26 8.9E-06 54.4 5.7 30 290-319 28-57 (290)
63 3ney_A 55 kDa erythrocyte memb 90.3 0.15 5E-06 53.3 3.3 27 292-318 18-44 (197)
64 1gvn_B Zeta; postsegregational 90.2 0.17 5.6E-06 55.8 3.9 27 291-317 31-57 (287)
65 2rhm_A Putative kinase; P-loop 90.1 0.16 5.4E-06 51.4 3.4 26 292-317 4-29 (193)
66 1p9r_A General secretion pathw 90.1 0.22 7.6E-06 57.9 5.0 36 282-318 157-192 (418)
67 1ye8_A Protein THEP1, hypothet 89.8 0.16 5.4E-06 51.9 3.1 23 295-317 2-24 (178)
68 2chg_A Replication factor C sm 89.8 0.25 8.4E-06 50.4 4.6 35 284-318 29-63 (226)
69 1nks_A Adenylate kinase; therm 89.8 0.14 4.7E-06 51.7 2.6 25 295-319 3-27 (194)
70 1z6g_A Guanylate kinase; struc 89.7 0.12 4.2E-06 54.3 2.2 26 292-317 22-47 (218)
71 1njg_A DNA polymerase III subu 89.7 0.32 1.1E-05 50.1 5.4 30 290-319 42-71 (250)
72 1htw_A HI0065; nucleotide-bind 89.7 0.18 6.2E-06 50.5 3.4 27 291-317 31-57 (158)
73 3jvv_A Twitching mobility prot 89.6 0.23 8E-06 56.4 4.7 37 283-320 114-150 (356)
74 1xjc_A MOBB protein homolog; s 89.5 0.22 7.5E-06 50.7 3.9 28 294-321 5-32 (169)
75 3e70_C DPA, signal recognition 89.5 0.26 8.8E-06 55.5 4.8 34 289-322 125-158 (328)
76 3cr8_A Sulfate adenylyltranfer 89.5 0.27 9.4E-06 59.1 5.3 31 291-321 367-397 (552)
77 3lw7_A Adenylate kinase relate 89.4 0.15 5E-06 50.3 2.4 19 295-313 3-21 (179)
78 2f1r_A Molybdopterin-guanine d 89.4 0.09 3.1E-06 53.5 0.9 27 294-320 3-29 (171)
79 3trf_A Shikimate kinase, SK; a 89.3 0.2 6.8E-06 50.5 3.4 25 293-317 5-29 (185)
80 3tqf_A HPR(Ser) kinase; transf 89.3 0.16 5.6E-06 51.8 2.7 24 292-315 15-38 (181)
81 1kag_A SKI, shikimate kinase I 89.2 0.16 5.5E-06 50.6 2.6 24 294-317 5-28 (173)
82 1l8q_A Chromosomal replication 89.2 0.27 9.2E-06 54.5 4.6 45 274-320 18-64 (324)
83 2yvu_A Probable adenylyl-sulfa 89.1 0.27 9.4E-06 49.7 4.3 30 292-321 12-41 (186)
84 2bdt_A BH3686; alpha-beta prot 89.1 0.2 6.8E-06 50.8 3.3 22 294-315 3-24 (189)
85 2z0h_A DTMP kinase, thymidylat 89.0 0.22 7.6E-06 50.5 3.6 25 296-320 3-27 (197)
86 2bbw_A Adenylate kinase 4, AK4 89.0 0.21 7.2E-06 53.2 3.5 27 292-318 26-52 (246)
87 3cm0_A Adenylate kinase; ATP-b 88.9 0.24 8.1E-06 49.9 3.7 26 292-317 3-28 (186)
88 2jaq_A Deoxyguanosine kinase; 88.9 0.2 6.9E-06 51.0 3.1 24 295-318 2-25 (205)
89 1gtv_A TMK, thymidylate kinase 88.8 0.094 3.2E-06 54.1 0.5 25 295-319 2-26 (214)
90 4gp7_A Metallophosphoesterase; 88.8 0.26 8.7E-06 49.6 3.7 21 292-312 8-28 (171)
91 1e6c_A Shikimate kinase; phosp 88.8 0.21 7.2E-06 49.6 3.1 23 295-317 4-26 (173)
92 2pt5_A Shikimate kinase, SK; a 88.7 0.21 7.3E-06 49.4 3.1 23 295-317 2-24 (168)
93 3aez_A Pantothenate kinase; tr 88.6 0.25 8.5E-06 55.1 3.9 30 290-319 87-116 (312)
94 2ewv_A Twitching motility prot 88.5 0.25 8.5E-06 56.5 3.9 31 290-320 133-163 (372)
95 1cke_A CK, MSSA, protein (cyti 88.5 0.23 8E-06 51.7 3.4 25 293-317 5-29 (227)
96 1sq5_A Pantothenate kinase; P- 88.5 0.35 1.2E-05 53.6 5.0 28 291-318 78-105 (308)
97 1d2n_A N-ethylmaleimide-sensit 88.4 0.43 1.5E-05 51.5 5.5 28 290-317 61-88 (272)
98 3b9q_A Chloroplast SRP recepto 88.3 0.33 1.1E-05 53.9 4.6 31 292-322 99-129 (302)
99 2iyv_A Shikimate kinase, SK; t 88.3 0.24 8.3E-06 49.9 3.2 24 295-318 4-27 (184)
100 1rj9_A FTSY, signal recognitio 88.2 0.31 1E-05 54.2 4.2 31 292-322 101-131 (304)
101 3oja_B Anopheles plasmodium-re 88.1 3.5 0.00012 49.5 13.9 79 1000-1078 507-588 (597)
102 3lnc_A Guanylate kinase, GMP k 88.1 0.2 6.7E-06 52.8 2.4 26 292-317 26-52 (231)
103 2vp4_A Deoxynucleoside kinase; 88.0 0.15 5.1E-06 53.9 1.5 37 280-316 2-43 (230)
104 1via_A Shikimate kinase; struc 88.0 0.25 8.7E-06 49.4 3.1 23 295-317 6-28 (175)
105 1ly1_A Polynucleotide kinase; 87.7 0.28 9.7E-06 48.8 3.3 22 294-315 3-24 (181)
106 1fnn_A CDC6P, cell division co 87.7 0.47 1.6E-05 53.4 5.5 37 282-318 31-69 (389)
107 3fb4_A Adenylate kinase; psych 87.7 0.27 9.2E-06 51.0 3.2 22 296-317 3-24 (216)
108 3n70_A Transport activator; si 87.7 0.21 7.3E-06 48.7 2.3 24 291-314 22-45 (145)
109 1qf9_A UMP/CMP kinase, protein 87.6 0.24 8.1E-06 49.9 2.7 25 293-317 6-30 (194)
110 2qby_B CDC6 homolog 3, cell di 87.6 0.43 1.5E-05 53.7 5.1 40 281-320 33-72 (384)
111 2jeo_A Uridine-cytidine kinase 87.4 0.35 1.2E-05 51.5 3.9 27 291-317 23-49 (245)
112 2pbr_A DTMP kinase, thymidylat 87.4 0.29 9.9E-06 49.4 3.1 25 295-319 2-26 (195)
113 1svm_A Large T antigen; AAA+ f 87.3 0.56 1.9E-05 53.7 5.8 45 273-317 148-193 (377)
114 2plr_A DTMP kinase, probable t 87.3 0.29 1E-05 50.1 3.1 26 293-318 4-29 (213)
115 3tlx_A Adenylate kinase 2; str 87.2 0.65 2.2E-05 49.5 5.9 27 291-317 27-53 (243)
116 2w0m_A SSO2452; RECA, SSPF, un 87.1 0.41 1.4E-05 49.5 4.2 40 283-322 11-52 (235)
117 3te6_A Regulatory protein SIR3 87.1 0.4 1.4E-05 53.7 4.3 39 282-320 34-72 (318)
118 4e22_A Cytidylate kinase; P-lo 87.1 0.29 9.9E-06 52.6 3.1 28 291-318 25-52 (252)
119 1m8p_A Sulfate adenylyltransfe 87.1 0.58 2E-05 56.6 6.0 49 271-320 370-423 (573)
120 1iqp_A RFCS; clamp loader, ext 87.0 0.37 1.3E-05 52.8 4.0 35 284-318 37-71 (327)
121 2bwj_A Adenylate kinase 5; pho 87.0 0.27 9.1E-06 50.0 2.6 26 293-318 12-37 (199)
122 3ake_A Cytidylate kinase; CMP 87.0 0.31 1.1E-05 49.8 3.2 23 295-317 4-26 (208)
123 1ofh_A ATP-dependent HSL prote 86.9 0.4 1.4E-05 52.2 4.2 27 291-317 48-74 (310)
124 2og2_A Putative signal recogni 86.8 0.45 1.5E-05 54.1 4.6 31 292-322 156-186 (359)
125 2cdn_A Adenylate kinase; phosp 86.8 0.39 1.3E-05 49.2 3.7 28 290-317 17-44 (201)
126 2p5t_B PEZT; postsegregational 86.7 0.3 1E-05 52.5 2.9 27 291-317 30-56 (253)
127 2wwf_A Thymidilate kinase, put 86.6 0.29 9.8E-06 50.3 2.7 27 293-319 10-36 (212)
128 1tev_A UMP-CMP kinase; ploop, 86.6 0.39 1.3E-05 48.3 3.6 25 293-317 3-27 (196)
129 2c95_A Adenylate kinase 1; tra 86.6 0.33 1.1E-05 49.1 3.1 26 292-317 8-33 (196)
130 3a4m_A L-seryl-tRNA(SEC) kinas 86.6 0.37 1.3E-05 51.9 3.6 28 293-320 4-31 (260)
131 2vli_A Antibiotic resistance p 86.4 0.24 8.3E-06 49.6 1.9 25 293-317 5-29 (183)
132 2gks_A Bifunctional SAT/APS ki 86.4 0.52 1.8E-05 56.7 5.1 50 270-319 345-398 (546)
133 3dl0_A Adenylate kinase; phosp 86.4 0.29 9.8E-06 50.8 2.5 22 296-317 3-24 (216)
134 1zd8_A GTP:AMP phosphotransfer 86.3 0.26 8.9E-06 51.7 2.2 26 292-317 6-31 (227)
135 1lv7_A FTSH; alpha/beta domain 86.3 0.39 1.3E-05 51.2 3.6 26 292-317 44-69 (257)
136 2v9p_A Replication protein E1; 86.3 0.38 1.3E-05 53.5 3.6 36 282-317 114-150 (305)
137 2qt1_A Nicotinamide riboside k 86.3 0.23 7.8E-06 51.3 1.7 26 291-316 19-44 (207)
138 2gza_A Type IV secretion syste 86.3 0.17 5.6E-06 57.7 0.6 28 292-319 174-201 (361)
139 1uf9_A TT1252 protein; P-loop, 86.2 0.35 1.2E-05 49.3 3.0 26 291-316 6-31 (203)
140 3vkg_A Dynein heavy chain, cyt 86.2 47 0.0016 47.8 24.6 54 995-1048 2014-2067(3245)
141 1vma_A Cell division protein F 86.1 0.53 1.8E-05 52.4 4.6 47 276-322 79-133 (306)
142 1a7j_A Phosphoribulokinase; tr 86.1 0.28 9.7E-06 54.0 2.4 26 293-318 5-30 (290)
143 2qz4_A Paraplegin; AAA+, SPG7, 86.1 0.41 1.4E-05 50.9 3.6 27 291-317 37-63 (262)
144 2yhs_A FTSY, cell division pro 86.1 0.51 1.7E-05 55.9 4.6 49 274-322 265-322 (503)
145 1zak_A Adenylate kinase; ATP:A 86.0 0.32 1.1E-05 50.8 2.7 25 294-318 6-30 (222)
146 3tif_A Uncharacterized ABC tra 85.9 0.32 1.1E-05 51.9 2.6 25 291-315 29-53 (235)
147 2ehv_A Hypothetical protein PH 85.9 0.52 1.8E-05 49.6 4.2 27 292-318 29-55 (251)
148 3nwj_A ATSK2; P loop, shikimat 85.8 0.35 1.2E-05 52.2 2.9 25 293-317 48-72 (250)
149 2i3b_A HCR-ntpase, human cance 85.7 0.39 1.3E-05 49.6 3.0 25 294-318 2-26 (189)
150 1nn5_A Similar to deoxythymidy 85.7 0.4 1.4E-05 49.3 3.2 29 292-320 8-36 (215)
151 3oja_B Anopheles plasmodium-re 85.7 4.2 0.00014 48.9 12.7 79 995-1073 509-587 (597)
152 4a74_A DNA repair and recombin 85.6 0.35 1.2E-05 50.1 2.8 27 292-318 24-50 (231)
153 2z4s_A Chromosomal replication 85.5 0.61 2.1E-05 54.4 4.9 40 281-320 117-157 (440)
154 1y63_A LMAJ004144AAA protein; 85.4 0.48 1.6E-05 48.0 3.6 25 292-316 9-33 (184)
155 2v1u_A Cell division control p 85.4 0.37 1.3E-05 54.0 3.0 31 289-319 40-70 (387)
156 2qby_A CDC6 homolog 1, cell di 85.4 0.34 1.2E-05 54.2 2.6 35 285-319 37-71 (386)
157 1g8f_A Sulfate adenylyltransfe 85.3 0.43 1.5E-05 56.9 3.5 45 273-319 377-421 (511)
158 1ukz_A Uridylate kinase; trans 85.3 0.44 1.5E-05 48.7 3.3 26 292-317 14-39 (203)
159 2v54_A DTMP kinase, thymidylat 85.1 0.31 1E-05 49.8 1.9 25 293-317 4-28 (204)
160 3syl_A Protein CBBX; photosynt 85.1 0.75 2.6E-05 50.2 5.2 31 290-320 64-94 (309)
161 4fcw_A Chaperone protein CLPB; 85.0 0.52 1.8E-05 51.5 3.9 26 293-318 47-72 (311)
162 2ze6_A Isopentenyl transferase 84.9 0.45 1.5E-05 51.2 3.1 23 295-317 3-25 (253)
163 3uk6_A RUVB-like 2; hexameric 84.7 0.66 2.3E-05 52.0 4.6 26 293-318 70-95 (368)
164 1zu4_A FTSY; GTPase, signal re 84.7 0.68 2.3E-05 51.8 4.6 31 292-322 104-134 (320)
165 3a7p_A Autophagy protein 16; c 84.6 10 0.00035 37.4 12.1 68 995-1062 68-135 (152)
166 3hnw_A Uncharacterized protein 84.5 7.1 0.00024 38.2 11.2 14 1021-1034 87-100 (138)
167 4edh_A DTMP kinase, thymidylat 84.3 0.53 1.8E-05 49.5 3.3 28 293-320 6-33 (213)
168 1nij_A Hypothetical protein YJ 84.2 0.42 1.4E-05 53.3 2.7 24 293-316 4-27 (318)
169 1sxj_E Activator 1 40 kDa subu 84.2 0.52 1.8E-05 52.6 3.4 37 282-318 24-61 (354)
170 1ixz_A ATP-dependent metallopr 84.2 0.45 1.5E-05 50.7 2.8 25 293-317 49-73 (254)
171 1vht_A Dephospho-COA kinase; s 84.1 0.41 1.4E-05 49.7 2.4 23 293-315 4-26 (218)
172 1r6b_X CLPA protein; AAA+, N-t 84.1 1.3 4.4E-05 55.2 7.3 66 253-319 167-233 (758)
173 1e4v_A Adenylate kinase; trans 84.0 0.45 1.5E-05 49.4 2.7 22 296-317 3-24 (214)
174 2bjv_A PSP operon transcriptio 83.9 0.59 2E-05 50.1 3.6 26 292-317 28-53 (265)
175 3r20_A Cytidylate kinase; stru 83.9 0.53 1.8E-05 50.3 3.1 26 293-318 9-34 (233)
176 1jjv_A Dephospho-COA kinase; P 83.8 0.44 1.5E-05 49.0 2.5 21 295-315 4-24 (206)
177 3b9p_A CG5977-PA, isoform A; A 83.8 0.49 1.7E-05 51.5 3.0 27 291-317 52-78 (297)
178 2chq_A Replication factor C sm 83.8 0.66 2.3E-05 50.6 4.0 36 283-318 28-63 (319)
179 3pvs_A Replication-associated 83.7 0.58 2E-05 54.8 3.7 37 282-318 39-75 (447)
180 1sxj_C Activator 1 40 kDa subu 83.7 0.78 2.7E-05 51.2 4.6 35 284-318 37-71 (340)
181 2fxo_A Myosin heavy chain, car 83.6 14 0.00049 35.5 12.9 81 995-1075 41-124 (129)
182 2xb4_A Adenylate kinase; ATP-b 83.6 0.55 1.9E-05 49.3 3.1 23 295-317 2-24 (223)
183 1hqc_A RUVB; extended AAA-ATPa 83.4 1.2 4.2E-05 48.8 6.0 27 291-317 36-62 (324)
184 3co5_A Putative two-component 83.4 0.24 8.1E-06 48.3 0.2 24 292-315 26-49 (143)
185 2oap_1 GSPE-2, type II secreti 83.4 0.25 8.7E-06 58.9 0.5 25 293-317 260-284 (511)
186 2if2_A Dephospho-COA kinase; a 83.3 0.41 1.4E-05 49.1 1.9 21 295-315 3-23 (204)
187 1aky_A Adenylate kinase; ATP:A 83.3 0.65 2.2E-05 48.3 3.5 26 293-318 4-29 (220)
188 2px0_A Flagellar biosynthesis 83.2 1.7 5.7E-05 48.0 7.0 29 291-319 103-131 (296)
189 1jr3_A DNA polymerase III subu 83.2 1 3.5E-05 50.3 5.4 30 290-319 35-64 (373)
190 3b85_A Phosphate starvation-in 83.1 0.78 2.7E-05 48.0 4.0 32 282-316 14-45 (208)
191 4eaq_A DTMP kinase, thymidylat 83.0 0.74 2.5E-05 48.8 3.9 28 292-319 25-52 (229)
192 2cbz_A Multidrug resistance-as 83.0 0.51 1.7E-05 50.4 2.6 27 291-317 29-55 (237)
193 2ff7_A Alpha-hemolysin translo 82.9 0.5 1.7E-05 50.8 2.5 25 292-316 34-58 (247)
194 1sxj_D Activator 1 41 kDa subu 82.8 0.78 2.7E-05 50.9 4.1 36 283-318 48-83 (353)
195 4tmk_A Protein (thymidylate ki 82.8 0.62 2.1E-05 49.0 3.1 27 294-320 4-30 (213)
196 2ghi_A Transport protein; mult 82.7 0.53 1.8E-05 51.0 2.6 26 291-316 44-69 (260)
197 3tqc_A Pantothenate kinase; bi 82.6 0.78 2.7E-05 51.4 4.0 28 292-319 91-118 (321)
198 1mv5_A LMRA, multidrug resista 82.6 0.64 2.2E-05 49.7 3.2 27 291-317 26-52 (243)
199 2onk_A Molybdate/tungstate ABC 82.6 0.61 2.1E-05 49.9 3.0 25 291-316 23-47 (240)
200 3h4m_A Proteasome-activating n 82.5 0.61 2.1E-05 50.3 3.0 26 291-316 49-74 (285)
201 2d2e_A SUFC protein; ABC-ATPas 82.4 0.62 2.1E-05 50.1 3.0 25 292-316 28-52 (250)
202 3lv8_A DTMP kinase, thymidylat 82.3 0.65 2.2E-05 49.7 3.1 29 293-321 27-55 (236)
203 3ol1_A Vimentin; structural ge 82.2 15 0.00051 34.9 12.2 75 996-1070 42-116 (119)
204 2jee_A YIIU; FTSZ, septum, coi 82.2 17 0.00057 32.2 11.3 32 1006-1037 10-41 (81)
205 3cf0_A Transitional endoplasmi 82.1 0.64 2.2E-05 51.1 3.1 27 291-317 47-73 (301)
206 3v9p_A DTMP kinase, thymidylat 82.1 0.69 2.3E-05 49.2 3.2 29 292-320 24-52 (227)
207 1ko7_A HPR kinase/phosphatase; 82.0 0.6 2E-05 52.1 2.8 24 293-316 144-167 (314)
208 3gfo_A Cobalt import ATP-bindi 82.0 0.54 1.8E-05 51.5 2.4 25 292-316 33-57 (275)
209 3llm_A ATP-dependent RNA helic 82.0 1.1 3.6E-05 47.3 4.6 36 276-314 62-97 (235)
210 2zu0_C Probable ATP-dependent 82.0 0.67 2.3E-05 50.4 3.1 26 291-316 44-69 (267)
211 1uj2_A Uridine-cytidine kinase 82.0 0.71 2.4E-05 49.3 3.3 27 292-318 21-47 (252)
212 3pxg_A Negative regulator of g 82.0 1.6 5.3E-05 51.4 6.5 31 289-319 197-227 (468)
213 4g1u_C Hemin import ATP-bindin 81.9 0.56 1.9E-05 51.0 2.4 26 292-317 36-61 (266)
214 2ixe_A Antigen peptide transpo 81.9 0.59 2E-05 51.0 2.6 27 291-317 43-69 (271)
215 2qgz_A Helicase loader, putati 81.9 1.1 3.8E-05 49.7 4.9 29 293-321 152-181 (308)
216 1iy2_A ATP-dependent metallopr 81.8 0.64 2.2E-05 50.4 2.9 25 293-317 73-97 (278)
217 1b0u_A Histidine permease; ABC 81.8 0.66 2.3E-05 50.3 2.9 25 291-315 30-54 (262)
218 1in4_A RUVB, holliday junction 81.7 1.2 4E-05 49.8 5.1 28 290-317 48-75 (334)
219 1knx_A Probable HPR(Ser) kinas 81.6 0.55 1.9E-05 52.4 2.2 24 292-315 146-169 (312)
220 2pcj_A ABC transporter, lipopr 81.3 0.58 2E-05 49.4 2.3 23 292-314 29-51 (224)
221 2olj_A Amino acid ABC transpor 81.2 0.71 2.4E-05 50.2 2.9 25 291-315 48-72 (263)
222 2r62_A Cell division protease 81.1 0.5 1.7E-05 50.6 1.7 27 291-317 42-68 (268)
223 3pfi_A Holliday junction ATP-d 81.0 1.1 3.6E-05 49.8 4.4 28 290-317 52-79 (338)
224 3kl4_A SRP54, signal recogniti 81.0 1.9 6.4E-05 50.3 6.5 31 292-322 96-126 (433)
225 3ld9_A DTMP kinase, thymidylat 81.0 1.1 3.9E-05 47.4 4.4 30 290-319 18-47 (223)
226 3gn4_A Myosin-VI; unconvention 81.0 2 6.8E-05 42.4 5.7 20 907-926 46-65 (148)
227 3vkg_A Dynein heavy chain, cyt 81.0 64 0.0022 46.4 22.5 23 292-314 1303-1325(3245)
228 1cr0_A DNA primase/helicase; R 80.8 0.94 3.2E-05 49.5 3.8 29 291-319 33-61 (296)
229 3u61_B DNA polymerase accessor 80.7 1.8 6E-05 47.7 6.0 52 262-317 16-72 (324)
230 2ga8_A Hypothetical 39.9 kDa p 80.7 1.7 5.7E-05 49.4 5.8 41 278-318 6-49 (359)
231 3na7_A HP0958; flagellar bioge 80.7 13 0.00043 40.1 12.6 70 995-1064 90-159 (256)
232 1sgw_A Putative ABC transporte 80.7 0.57 1.9E-05 49.3 1.9 25 292-316 34-58 (214)
233 1g6h_A High-affinity branched- 80.7 0.74 2.5E-05 49.7 2.8 25 292-316 32-56 (257)
234 2pze_A Cystic fibrosis transme 80.6 0.67 2.3E-05 49.1 2.4 26 292-317 33-58 (229)
235 2qmh_A HPR kinase/phosphorylas 80.6 0.78 2.7E-05 47.9 2.8 26 292-317 33-58 (205)
236 3sop_A Neuronal-specific septi 80.6 0.68 2.3E-05 50.4 2.5 27 295-321 4-30 (270)
237 1sxj_B Activator 1 37 kDa subu 80.5 1.1 3.9E-05 48.7 4.4 35 284-318 33-67 (323)
238 2cvh_A DNA repair and recombin 80.5 0.83 2.8E-05 46.9 3.1 33 283-315 8-42 (220)
239 3foz_A TRNA delta(2)-isopenten 80.5 0.86 2.9E-05 50.8 3.3 30 287-316 4-33 (316)
240 2pt7_A CAG-ALFA; ATPase, prote 80.4 0.32 1.1E-05 54.6 -0.1 28 292-319 170-197 (330)
241 2yz2_A Putative ABC transporte 80.4 0.79 2.7E-05 49.8 3.0 25 291-315 31-55 (266)
242 1um8_A ATP-dependent CLP prote 80.2 0.83 2.9E-05 51.7 3.2 26 292-317 71-96 (376)
243 1w5s_A Origin recognition comp 80.1 1.5 5.2E-05 49.6 5.4 37 282-318 36-77 (412)
244 1a5t_A Delta prime, HOLB; zinc 80.1 1.7 5.8E-05 48.5 5.7 31 289-319 20-50 (334)
245 1ls1_A Signal recognition part 80.1 1.3 4.3E-05 48.9 4.5 31 292-322 97-127 (295)
246 1vpl_A ABC transporter, ATP-bi 80.1 0.82 2.8E-05 49.4 2.9 24 291-314 39-62 (256)
247 2eqb_B RAB guanine nucleotide 80.1 11 0.00038 34.5 9.8 35 998-1032 29-63 (97)
248 3rlf_A Maltose/maltodextrin im 80.0 0.84 2.9E-05 52.3 3.1 26 291-316 27-52 (381)
249 2grj_A Dephospho-COA kinase; T 79.9 0.93 3.2E-05 46.8 3.2 52 293-344 12-65 (192)
250 1ak2_A Adenylate kinase isoenz 79.9 0.9 3.1E-05 47.9 3.1 26 293-318 16-41 (233)
251 3be4_A Adenylate kinase; malar 79.7 0.8 2.7E-05 47.7 2.6 24 294-317 6-29 (217)
252 1ji0_A ABC transporter; ATP bi 79.6 0.84 2.9E-05 48.7 2.8 25 292-316 31-55 (240)
253 3hws_A ATP-dependent CLP prote 79.3 1.3 4.5E-05 49.9 4.4 26 292-317 50-75 (363)
254 2dr3_A UPF0273 protein PH0284; 79.2 1.2 3.9E-05 46.7 3.7 30 292-321 22-51 (247)
255 1g8p_A Magnesium-chelatase 38 78.9 0.86 3E-05 50.5 2.7 26 292-317 44-69 (350)
256 1n0w_A DNA repair protein RAD5 78.8 0.95 3.3E-05 47.3 2.9 25 292-316 23-47 (243)
257 1ojl_A Transcriptional regulat 78.8 0.87 3E-05 50.3 2.7 27 291-317 23-49 (304)
258 1q3t_A Cytidylate kinase; nucl 78.7 1.2 4.2E-05 46.9 3.7 27 291-317 14-40 (236)
259 2qi9_C Vitamin B12 import ATP- 78.7 0.84 2.9E-05 49.1 2.4 25 292-316 25-49 (249)
260 2ihy_A ABC transporter, ATP-bi 78.6 0.83 2.8E-05 50.0 2.4 25 292-316 46-70 (279)
261 2nq2_C Hypothetical ABC transp 78.6 0.93 3.2E-05 48.9 2.8 26 292-317 30-55 (253)
262 3tmk_A Thymidylate kinase; pho 78.4 0.92 3.2E-05 47.8 2.6 27 292-318 4-30 (216)
263 4anj_A Unconventional myosin-V 78.1 2.7 9.4E-05 54.0 7.3 45 904-964 773-817 (1052)
264 3d3q_A TRNA delta(2)-isopenten 78.1 0.93 3.2E-05 51.1 2.7 24 294-317 8-31 (340)
265 1ltq_A Polynucleotide kinase; 78.0 1.1 3.8E-05 48.8 3.3 23 294-316 3-25 (301)
266 3dm5_A SRP54, signal recogniti 78.0 2.2 7.4E-05 49.9 5.8 30 292-321 99-128 (443)
267 3nh6_A ATP-binding cassette SU 77.8 0.66 2.3E-05 51.6 1.3 27 291-317 78-104 (306)
268 3tui_C Methionine import ATP-b 77.6 1.1 3.8E-05 51.0 3.1 25 291-315 52-76 (366)
269 2h92_A Cytidylate kinase; ross 77.4 1 3.5E-05 46.5 2.6 24 294-317 4-27 (219)
270 3kta_A Chromosome segregation 77.3 0.98 3.3E-05 45.3 2.4 24 294-317 27-50 (182)
271 1sxj_A Activator 1 95 kDa subu 77.3 1.3 4.4E-05 52.8 3.7 26 292-317 76-101 (516)
272 3fvq_A Fe(3+) IONS import ATP- 77.2 1 3.4E-05 51.3 2.6 25 292-316 29-53 (359)
273 2pjz_A Hypothetical protein ST 77.2 0.97 3.3E-05 49.1 2.4 23 293-315 30-52 (263)
274 2ocp_A DGK, deoxyguanosine kin 76.9 1 3.5E-05 47.6 2.5 26 293-318 2-27 (241)
275 1lw7_A Transcriptional regulat 76.9 0.98 3.3E-05 51.1 2.5 27 293-319 170-196 (365)
276 2yyz_A Sugar ABC transporter, 76.9 1.2 4.1E-05 50.7 3.1 26 291-316 27-52 (359)
277 3t15_A Ribulose bisphosphate c 76.8 1.2 4.1E-05 48.9 3.0 27 291-317 34-60 (293)
278 3eie_A Vacuolar protein sortin 76.8 1.4 4.8E-05 48.9 3.6 26 292-317 50-75 (322)
279 3d8b_A Fidgetin-like protein 1 76.6 1.2 4E-05 50.4 3.0 27 291-317 115-141 (357)
280 3m6a_A ATP-dependent protease 76.3 1.7 5.7E-05 52.2 4.3 34 285-318 100-133 (543)
281 3pxi_A Negative regulator of g 76.3 2.7 9.4E-05 52.3 6.5 31 289-319 197-227 (758)
282 2it1_A 362AA long hypothetical 76.2 1.3 4.3E-05 50.5 3.1 26 291-316 27-52 (362)
283 2bbs_A Cystic fibrosis transme 76.1 0.98 3.3E-05 49.8 2.1 27 291-317 62-88 (290)
284 3cvf_A Homer-3, homer protein 75.9 8.8 0.0003 33.9 7.6 49 1015-1063 12-60 (79)
285 2ffh_A Protein (FFH); SRP54, s 75.9 1.7 6E-05 50.4 4.2 31 292-322 97-127 (425)
286 3exa_A TRNA delta(2)-isopenten 75.8 1 3.4E-05 50.3 2.1 23 294-316 4-26 (322)
287 1z47_A CYSA, putative ABC-tran 75.7 1.3 4.4E-05 50.3 3.0 24 292-315 40-63 (355)
288 4ag6_A VIRB4 ATPase, type IV s 75.6 1.4 4.6E-05 50.4 3.2 28 292-319 34-61 (392)
289 2f6r_A COA synthase, bifunctio 75.5 1.2 4.3E-05 48.5 2.8 24 292-315 74-97 (281)
290 1v43_A Sugar-binding transport 75.5 1.4 4.6E-05 50.5 3.1 26 291-316 35-60 (372)
291 2hf9_A Probable hydrogenase ni 75.4 2.1 7.1E-05 44.2 4.3 34 285-318 30-63 (226)
292 1nlf_A Regulatory protein REPA 75.4 1.4 4.7E-05 47.7 3.1 27 292-318 29-55 (279)
293 1j8m_F SRP54, signal recogniti 75.4 2.1 7.1E-05 47.3 4.5 30 293-322 98-127 (297)
294 1vec_A ATP-dependent RNA helic 75.3 3.6 0.00012 41.7 6.1 56 251-312 4-59 (206)
295 2qm8_A GTPase/ATPase; G protei 75.3 2.3 8E-05 47.7 5.0 42 281-322 42-84 (337)
296 2x8a_A Nuclear valosin-contain 75.3 1.2 4.2E-05 48.4 2.6 25 293-317 44-68 (274)
297 3sr0_A Adenylate kinase; phosp 75.0 1.5 5.3E-05 45.7 3.2 23 296-318 3-25 (206)
298 1x6v_B Bifunctional 3'-phospho 74.8 2.3 7.9E-05 51.8 5.1 29 292-320 51-79 (630)
299 3zvl_A Bifunctional polynucleo 74.8 1 3.5E-05 52.1 1.9 28 290-317 255-282 (416)
300 3ice_A Transcription terminati 74.8 2.8 9.4E-05 48.2 5.3 47 274-320 155-201 (422)
301 1ic2_A Tropomyosin alpha chain 74.7 41 0.0014 29.5 11.9 52 1003-1054 7-58 (81)
302 1g29_1 MALK, maltose transport 74.6 1.4 4.8E-05 50.3 3.0 24 292-315 28-51 (372)
303 3pey_A ATP-dependent RNA helic 74.6 3.7 0.00013 45.7 6.5 62 249-314 4-65 (395)
304 2wsm_A Hydrogenase expression/ 74.6 1.9 6.5E-05 44.4 3.7 28 291-318 28-55 (221)
305 3tnu_B Keratin, type II cytosk 74.5 17 0.00057 35.0 10.1 33 1000-1032 34-66 (129)
306 1xwi_A SKD1 protein; VPS4B, AA 74.5 1.5 5E-05 48.9 3.0 26 292-317 44-69 (322)
307 3a7p_A Autophagy protein 16; c 74.5 25 0.00085 34.7 11.2 65 995-1059 75-139 (152)
308 3hjn_A DTMP kinase, thymidylat 74.3 1.9 6.5E-05 44.5 3.6 26 296-321 3-28 (197)
309 3gd7_A Fusion complex of cysti 73.9 1.4 4.6E-05 50.8 2.6 27 291-317 45-71 (390)
310 1w7j_A Myosin VA; motor protei 73.9 2.2 7.5E-05 53.4 4.7 21 490-510 306-326 (795)
311 3d31_A Sulfate/molybdate ABC t 73.9 1.1 3.8E-05 50.7 1.8 25 291-315 24-48 (348)
312 3ch4_B Pmkase, phosphomevalona 73.9 1.5 5.1E-05 45.8 2.6 24 294-317 12-35 (202)
313 3eph_A TRNA isopentenyltransfe 73.8 1.4 4.7E-05 50.9 2.6 22 295-316 4-25 (409)
314 2equ_A PHD finger protein 20-l 73.8 8.1 0.00028 33.7 6.9 51 156-206 11-62 (74)
315 2qp9_X Vacuolar protein sortin 73.7 1.6 5.4E-05 49.3 3.1 26 292-317 83-108 (355)
316 3crm_A TRNA delta(2)-isopenten 73.7 1.3 4.6E-05 49.5 2.4 24 293-316 5-28 (323)
317 2jee_A YIIU; FTSZ, septum, coi 73.4 49 0.0017 29.3 11.8 23 1015-1037 26-48 (81)
318 4hcz_A PHD finger protein 1; p 73.1 13 0.00043 30.8 7.3 49 156-204 5-55 (58)
319 3cve_A Homer protein homolog 1 73.1 24 0.00081 30.6 9.4 49 1015-1063 6-54 (72)
320 2yv5_A YJEQ protein; hydrolase 72.9 2 6.8E-05 47.5 3.5 29 286-314 158-186 (302)
321 2npi_A Protein CLP1; CLP1-PCF1 72.8 1.2 4E-05 52.5 1.7 32 291-322 136-167 (460)
322 2v71_A Nuclear distribution pr 72.6 36 0.0012 34.9 12.4 42 1018-1059 90-131 (189)
323 3tnu_A Keratin, type I cytoske 72.5 15 0.00051 35.4 9.3 24 1038-1061 85-108 (131)
324 1t6n_A Probable ATP-dependent 72.5 7.7 0.00026 39.7 7.8 63 248-316 12-74 (220)
325 2v71_A Nuclear distribution pr 72.3 68 0.0023 32.9 14.4 34 1015-1048 94-127 (189)
326 3upu_A ATP-dependent DNA helic 72.2 3.1 0.0001 48.6 5.1 29 294-322 46-74 (459)
327 2obl_A ESCN; ATPase, hydrolase 72.2 1.5 5.2E-05 49.5 2.5 37 281-317 59-95 (347)
328 1mhn_A SurviVal motor neuron p 72.1 16 0.00054 30.1 8.0 48 158-205 7-58 (59)
329 1tue_A Replication protein E1; 72.0 1.7 5.8E-05 45.6 2.5 36 282-317 46-82 (212)
330 1qde_A EIF4A, translation init 71.6 4.2 0.00014 41.9 5.5 61 251-317 15-76 (224)
331 3fdi_A Uncharacterized protein 71.6 1.5 5.2E-05 45.4 2.1 24 294-317 7-30 (201)
332 3umf_A Adenylate kinase; rossm 71.5 2.6 9E-05 44.4 3.9 28 291-318 27-54 (217)
333 2dpy_A FLII, flagellum-specifi 71.2 2.2 7.5E-05 49.8 3.5 38 281-318 145-182 (438)
334 3ber_A Probable ATP-dependent 70.9 4.1 0.00014 43.2 5.4 63 251-319 44-107 (249)
335 1oxx_K GLCV, glucose, ABC tran 70.9 1.2 4E-05 50.6 1.1 26 291-316 29-54 (353)
336 3vfd_A Spastin; ATPase, microt 70.9 2 6.7E-05 49.0 3.0 25 292-316 147-171 (389)
337 2v4h_A NF-kappa-B essential mo 70.8 68 0.0023 29.9 12.6 14 1024-1037 63-76 (110)
338 3euj_A Chromosome partition pr 70.8 2 6.9E-05 50.7 3.1 29 294-322 30-58 (483)
339 3hdt_A Putative kinase; struct 69.8 2 6.9E-05 45.4 2.6 26 293-318 14-39 (223)
340 1qvr_A CLPB protein; coiled co 69.6 2.5 8.7E-05 53.4 3.9 31 289-319 187-217 (854)
341 3hu3_A Transitional endoplasmi 69.0 2.2 7.4E-05 50.6 2.9 27 290-316 235-261 (489)
342 3b5x_A Lipid A export ATP-bind 68.7 1.7 5.7E-05 52.6 1.9 28 291-318 367-394 (582)
343 2xau_A PRE-mRNA-splicing facto 68.5 4.9 0.00017 50.3 6.1 59 249-313 71-129 (773)
344 1pzn_A RAD51, DNA repair and r 68.4 2.2 7.6E-05 48.1 2.8 35 282-316 118-154 (349)
345 2axn_A 6-phosphofructo-2-kinas 68.3 3 0.0001 49.8 3.9 29 292-320 34-62 (520)
346 3k1j_A LON protease, ATP-depen 68.3 1.6 5.6E-05 52.9 1.7 25 294-318 61-85 (604)
347 2c9o_A RUVB-like 1; hexameric 68.3 4.7 0.00016 47.0 5.6 26 293-318 63-88 (456)
348 2qen_A Walker-type ATPase; unk 67.8 3.2 0.00011 45.5 3.8 23 294-316 32-54 (350)
349 2w83_C C-JUN-amino-terminal ki 67.6 22 0.00074 31.0 7.9 44 1012-1055 33-76 (77)
350 2xxa_A Signal recognition part 67.5 3.8 0.00013 47.7 4.5 30 291-320 98-127 (433)
351 2gxq_A Heat resistant RNA depe 67.5 6 0.0002 40.0 5.6 55 259-318 9-64 (207)
352 3u1c_A Tropomyosin alpha-1 cha 67.4 61 0.0021 29.7 11.8 39 1002-1040 30-68 (101)
353 1tf7_A KAIC; homohexamer, hexa 67.4 2.1 7.2E-05 51.0 2.4 37 283-319 27-66 (525)
354 2b8t_A Thymidine kinase; deoxy 67.3 3.9 0.00014 43.2 4.2 28 292-319 11-38 (223)
355 3bas_A Myosin heavy chain, str 67.0 71 0.0024 28.6 12.2 50 995-1044 14-63 (89)
356 2m0o_A PHD finger protein 1; t 67.0 15 0.00051 32.0 6.8 47 157-203 29-77 (79)
357 2yl4_A ATP-binding cassette SU 67.0 2.2 7.7E-05 51.6 2.5 26 291-316 368-393 (595)
358 3qf4_B Uncharacterized ABC tra 66.9 2.3 7.8E-05 51.6 2.6 27 291-317 379-405 (598)
359 1ry6_A Internal kinesin; kines 66.8 3.3 0.00011 47.0 3.7 35 276-310 67-102 (360)
360 4hlc_A DTMP kinase, thymidylat 66.7 3 0.0001 43.3 3.1 25 294-318 3-27 (205)
361 2f9l_A RAB11B, member RAS onco 66.7 2.7 9.4E-05 42.5 2.8 20 295-314 7-26 (199)
362 1yqt_A RNAse L inhibitor; ATP- 66.6 2.7 9.1E-05 50.4 3.0 27 292-318 46-72 (538)
363 3a8t_A Adenylate isopentenyltr 66.4 2.2 7.7E-05 48.0 2.2 24 292-315 39-62 (339)
364 2xk0_A Polycomb protein PCL; t 66.3 21 0.00073 30.4 7.5 46 158-203 19-64 (69)
365 1bif_A 6-phosphofructo-2-kinas 65.8 3.4 0.00012 48.4 3.8 30 291-320 37-66 (469)
366 3u1c_A Tropomyosin alpha-1 cha 65.7 77 0.0026 29.1 12.1 17 1021-1037 42-58 (101)
367 3fht_A ATP-dependent RNA helic 65.6 4.5 0.00016 45.4 4.6 65 249-317 24-89 (412)
368 3na7_A HP0958; flagellar bioge 65.6 48 0.0016 35.5 12.5 55 998-1052 100-154 (256)
369 3b60_A Lipid A export ATP-bind 65.5 2.2 7.6E-05 51.5 2.1 27 291-317 367-393 (582)
370 2ce7_A Cell division protein F 65.3 3.4 0.00012 48.7 3.6 25 291-315 47-71 (476)
371 3e1s_A Exodeoxyribonuclease V, 65.3 4.8 0.00016 48.5 5.0 29 293-321 204-232 (574)
372 1oix_A RAS-related protein RAB 65.2 2.6 9E-05 42.5 2.3 20 295-314 31-50 (191)
373 2zts_A Putative uncharacterize 65.1 3.9 0.00013 42.6 3.7 25 292-316 29-53 (251)
374 2qag_B Septin-6, protein NEDD5 65.1 3 0.0001 48.4 3.0 26 291-316 38-65 (427)
375 1w36_D RECD, exodeoxyribonucle 65.1 5 0.00017 48.7 5.1 28 293-320 164-191 (608)
376 2fna_A Conserved hypothetical 65.0 4.5 0.00016 44.3 4.4 24 294-317 31-54 (357)
377 1hv8_A Putative ATP-dependent 64.9 8.7 0.0003 42.1 6.7 61 251-316 7-67 (367)
378 1qvr_A CLPB protein; coiled co 64.8 5.9 0.0002 50.0 5.9 25 294-318 589-613 (854)
379 3gbj_A KIF13B protein; kinesin 64.8 4.4 0.00015 45.9 4.2 35 276-310 76-110 (354)
380 2efr_A General control protein 64.7 1.2E+02 0.0039 30.2 14.2 44 995-1038 77-120 (155)
381 1bg2_A Kinesin; motor protein, 64.5 4.6 0.00016 45.2 4.3 22 289-310 74-95 (325)
382 2zan_A Vacuolar protein sortin 64.4 3 0.0001 48.6 2.8 26 292-317 166-191 (444)
383 1p5z_B DCK, deoxycytidine kina 64.4 1.5 5.1E-05 47.1 0.2 27 291-317 22-48 (263)
384 1t9h_A YLOQ, probable GTPase E 64.2 2.1 7.1E-05 47.6 1.4 30 288-317 168-197 (307)
385 3qii_A PHD finger protein 20; 64.1 9.1 0.00031 34.2 5.2 43 160-205 30-73 (85)
386 1wt6_A Myotonin-protein kinase 64.0 61 0.0021 28.6 10.1 36 1020-1055 28-63 (81)
387 2d9t_A Tudor domain-containing 64.0 29 0.00099 30.3 8.5 56 153-208 8-67 (78)
388 2pl3_A Probable ATP-dependent 63.9 6.9 0.00024 40.7 5.3 64 250-319 25-89 (236)
389 2rcn_A Probable GTPase ENGC; Y 63.4 3.3 0.00011 47.0 2.9 26 292-317 214-239 (358)
390 1q0u_A Bstdead; DEAD protein, 63.3 6 0.00021 40.7 4.7 62 250-317 4-66 (219)
391 3dc4_A Kinesin-like protein NO 63.2 4.3 0.00015 45.8 3.7 21 290-310 92-112 (344)
392 1wt6_A Myotonin-protein kinase 63.2 59 0.002 28.7 9.9 41 1015-1055 30-70 (81)
393 3j16_B RLI1P; ribosome recycli 63.2 3.4 0.00011 50.3 3.0 28 291-318 101-128 (608)
394 4a14_A Kinesin, kinesin-like p 63.1 4.9 0.00017 45.3 4.2 22 289-310 80-101 (344)
395 4i1u_A Dephospho-COA kinase; s 63.1 2.6 8.8E-05 44.2 1.8 47 294-344 10-64 (210)
396 3s9g_A Protein hexim1; cyclin 63.1 59 0.002 29.6 10.1 54 1005-1058 33-86 (104)
397 1z2a_A RAS-related protein RAB 63.0 3.7 0.00013 39.5 2.8 20 295-314 7-26 (168)
398 3ozx_A RNAse L inhibitor; ATP 62.9 3.6 0.00012 49.3 3.2 28 291-318 23-50 (538)
399 1u0l_A Probable GTPase ENGC; p 62.9 3.2 0.00011 45.6 2.6 24 292-315 168-191 (301)
400 2ycu_A Non muscle myosin 2C, a 62.9 4 0.00014 52.5 3.7 36 884-919 788-825 (995)
401 2gno_A DNA polymerase III, gam 62.9 5.6 0.00019 43.9 4.6 34 283-316 8-41 (305)
402 2p67_A LAO/AO transport system 62.8 7.3 0.00025 43.6 5.6 43 280-322 42-85 (341)
403 2y65_A Kinesin, kinesin heavy 62.7 5.1 0.00017 45.6 4.3 22 289-310 81-102 (365)
404 3nwn_A Kinesin-like protein KI 62.7 4.4 0.00015 46.0 3.7 27 283-310 96-122 (359)
405 2v66_B Nuclear distribution pr 62.7 83 0.0028 29.5 11.6 31 1000-1030 40-70 (111)
406 1yrb_A ATP(GTP)binding protein 62.5 5.2 0.00018 42.3 4.1 28 291-318 12-39 (262)
407 1goj_A Kinesin, kinesin heavy 62.4 5.2 0.00018 45.3 4.3 36 274-310 62-98 (355)
408 2va8_A SSO2462, SKI2-type heli 62.4 6.5 0.00022 48.4 5.5 63 252-319 10-73 (715)
409 4a82_A Cystic fibrosis transme 62.4 2.1 7.2E-05 51.7 1.1 26 291-316 365-390 (578)
410 3lre_A Kinesin-like protein KI 62.3 4.8 0.00016 45.6 3.9 22 289-310 102-123 (355)
411 3pxi_A Negative regulator of g 62.3 3.8 0.00013 51.0 3.4 23 295-317 523-545 (758)
412 2qag_C Septin-7; cell cycle, c 62.2 3.1 0.0001 48.3 2.4 25 290-314 28-52 (418)
413 2dhr_A FTSH; AAA+ protein, hex 62.1 3.7 0.00013 48.7 3.1 25 293-317 64-88 (499)
414 3qf4_A ABC transporter, ATP-bi 62.1 2.5 8.4E-05 51.2 1.6 27 291-317 367-393 (587)
415 1ypw_A Transitional endoplasmi 62.0 3.2 0.00011 52.2 2.6 27 291-317 236-262 (806)
416 2v3c_C SRP54, signal recogniti 61.9 3.9 0.00014 47.5 3.2 29 293-321 99-127 (432)
417 2zj8_A DNA helicase, putative 61.8 5.7 0.00019 49.0 4.8 63 252-319 3-66 (720)
418 3eiq_A Eukaryotic initiation f 61.6 9.2 0.00031 42.9 6.2 61 251-317 41-102 (414)
419 3hr8_A Protein RECA; alpha and 61.6 4.9 0.00017 45.5 3.9 39 282-320 47-88 (356)
420 3lda_A DNA repair protein RAD5 61.5 3.3 0.00011 47.7 2.4 33 282-314 165-199 (400)
421 2owm_A Nckin3-434, related to 61.5 6.1 0.00021 46.1 4.7 35 276-310 120-154 (443)
422 2j37_W Signal recognition part 61.4 8.6 0.00029 45.6 6.0 30 292-321 100-129 (504)
423 2zej_A Dardarin, leucine-rich 61.3 3.2 0.00011 41.4 2.1 20 295-314 4-23 (184)
424 2wbe_C Bipolar kinesin KRP-130 61.2 5.7 0.0002 45.3 4.3 35 275-310 83-118 (373)
425 2dyk_A GTP-binding protein; GT 61.1 4.2 0.00014 38.9 2.8 20 295-314 3-22 (161)
426 2zfi_A Kinesin-like protein KI 60.8 5.8 0.0002 45.1 4.3 22 289-310 86-107 (366)
427 1e9r_A Conjugal transfer prote 60.7 3.8 0.00013 47.3 2.8 29 292-320 52-80 (437)
428 2fxo_A Myosin heavy chain, car 60.6 1.1E+02 0.0036 29.3 12.6 53 997-1049 50-102 (129)
429 1r6b_X CLPA protein; AAA+, N-t 60.6 4.9 0.00017 49.9 4.0 24 294-317 489-512 (758)
430 1x88_A Kinesin-like protein KI 60.4 5.8 0.0002 45.0 4.2 22 289-310 85-106 (359)
431 2orw_A Thymidine kinase; TMTK, 60.4 4.5 0.00016 41.1 3.0 25 293-317 3-28 (184)
432 3q8t_A Beclin-1; autophagy, AT 60.4 1E+02 0.0034 28.1 12.7 49 999-1047 22-70 (96)
433 2zr9_A Protein RECA, recombina 60.4 5.1 0.00017 45.2 3.7 30 292-321 60-89 (349)
434 3t0q_A AGR253WP; kinesin, alph 60.3 6.5 0.00022 44.4 4.5 35 275-310 69-103 (349)
435 2nr8_A Kinesin-like protein KI 60.1 5.2 0.00018 45.3 3.7 34 276-310 87-121 (358)
436 3p32_A Probable GTPase RV1496/ 60.1 8.7 0.0003 43.2 5.6 43 278-320 63-106 (355)
437 2wji_A Ferrous iron transport 60.1 4.2 0.00014 39.7 2.7 21 294-314 4-24 (165)
438 1tq4_A IIGP1, interferon-induc 60.0 4 0.00014 47.3 2.7 25 293-317 69-93 (413)
439 2qnr_A Septin-2, protein NEDD5 59.9 3.3 0.00011 45.6 2.0 25 291-315 16-40 (301)
440 1s2m_A Putative ATP-dependent 59.9 11 0.00036 42.3 6.3 60 249-314 20-79 (400)
441 2ce2_X GTPase HRAS; signaling 59.8 3.9 0.00013 39.0 2.3 20 295-314 5-24 (166)
442 1u8z_A RAS-related protein RAL 59.7 4.6 0.00016 38.6 2.8 20 295-314 6-25 (168)
443 1tf7_A KAIC; homohexamer, hexa 59.6 4.4 0.00015 48.2 3.2 35 284-318 270-306 (525)
444 2fz4_A DNA repair protein RAD2 59.6 4.8 0.00016 42.5 3.1 33 282-317 100-132 (237)
445 3swk_A Vimentin; cytoskeleton, 59.3 47 0.0016 29.7 9.1 58 996-1053 22-79 (86)
446 2wjg_A FEOB, ferrous iron tran 59.0 4.5 0.00015 40.0 2.7 21 294-314 8-28 (188)
447 3bk7_A ABC transporter ATP-bin 58.7 4.3 0.00015 49.3 2.9 27 292-318 116-142 (607)
448 1t5c_A CENP-E protein, centrom 58.7 5 0.00017 45.4 3.2 22 289-310 74-95 (349)
449 2vvg_A Kinesin-2; motor protei 58.6 5.8 0.0002 44.8 3.7 21 290-310 87-107 (350)
450 2r44_A Uncharacterized protein 58.5 3 0.0001 46.1 1.3 24 294-317 47-70 (331)
451 4dck_A Sodium channel protein 58.5 5.7 0.00019 40.1 3.2 25 880-904 127-151 (168)
452 2ged_A SR-beta, signal recogni 58.4 4.9 0.00017 40.0 2.8 21 294-314 49-69 (193)
453 1ek0_A Protein (GTP-binding pr 58.2 5.1 0.00017 38.5 2.8 19 295-313 5-23 (170)
454 3b6u_A Kinesin-like protein KI 58.1 5.9 0.0002 45.1 3.7 21 290-310 99-119 (372)
455 2q6q_A Spindle POLE BODY compo 58.1 69 0.0024 27.1 9.0 59 1013-1075 7-65 (74)
456 3l0o_A Transcription terminati 58.0 9.6 0.00033 43.8 5.4 59 246-319 143-201 (427)
457 3bh0_A DNAB-like replicative h 58.0 6.1 0.00021 43.7 3.8 27 291-317 66-92 (315)
458 1ky3_A GTP-binding protein YPT 57.9 5.1 0.00017 39.1 2.8 22 293-314 8-29 (182)
459 2www_A Methylmalonic aciduria 57.8 11 0.00039 42.2 6.0 29 293-321 74-102 (349)
460 2lw1_A ABC transporter ATP-bin 57.7 49 0.0017 29.6 9.0 19 997-1015 24-42 (89)
461 3ozx_A RNAse L inhibitor; ATP 57.6 4.1 0.00014 48.8 2.4 27 292-318 293-319 (538)
462 1kao_A RAP2A; GTP-binding prot 57.4 5.3 0.00018 38.2 2.8 20 295-314 5-24 (167)
463 3fmp_B ATP-dependent RNA helic 57.2 7.5 0.00026 45.2 4.6 32 279-311 118-149 (479)
464 1v8k_A Kinesin-like protein KI 57.2 5.3 0.00018 46.1 3.2 22 289-310 151-172 (410)
465 3ly5_A ATP-dependent RNA helic 57.2 11 0.00037 40.2 5.5 36 281-319 82-118 (262)
466 3bas_A Myosin heavy chain, str 57.2 99 0.0034 27.7 10.9 56 997-1052 23-78 (89)
467 1c1y_A RAS-related protein RAP 56.9 5.5 0.00019 38.2 2.8 20 295-314 5-24 (167)
468 1z08_A RAS-related protein RAB 56.6 5.5 0.00019 38.4 2.8 19 295-313 8-26 (170)
469 1v5w_A DMC1, meiotic recombina 56.6 6 0.0002 44.3 3.4 34 282-315 109-144 (343)
470 3fe2_A Probable ATP-dependent 56.5 14 0.00046 38.7 6.0 64 249-318 28-92 (242)
471 1z0j_A RAB-22, RAS-related pro 56.4 5.6 0.00019 38.3 2.8 19 295-313 8-26 (170)
472 3szr_A Interferon-induced GTP- 56.3 4.3 0.00015 49.3 2.3 21 296-316 48-68 (608)
473 1x79_B RAB GTPase binding effe 56.3 54 0.0018 30.8 9.1 48 1024-1071 46-93 (112)
474 1f9v_A Kinesin-like protein KA 56.2 7.3 0.00025 44.0 4.0 22 289-310 81-102 (347)
475 3thx_A DNA mismatch repair pro 56.2 6.9 0.00024 49.9 4.2 30 292-321 661-692 (934)
476 1wms_A RAB-9, RAB9, RAS-relate 56.2 5.6 0.00019 38.7 2.8 19 295-313 9-27 (177)
477 1pui_A ENGB, probable GTP-bind 56.1 3.3 0.00011 42.0 1.1 25 290-314 23-47 (210)
478 3b6e_A Interferon-induced heli 56.1 4.8 0.00016 40.8 2.4 35 281-318 39-73 (216)
479 3bor_A Human initiation factor 55.9 9.8 0.00033 39.7 4.8 27 282-311 59-85 (237)
480 2erx_A GTP-binding protein DI- 55.9 5.5 0.00019 38.4 2.6 21 294-314 4-24 (172)
481 1u94_A RECA protein, recombina 55.7 7.8 0.00027 43.8 4.2 29 292-320 62-90 (356)
482 2heh_A KIF2C protein; kinesin, 55.6 6.7 0.00023 44.9 3.6 21 290-310 132-152 (387)
483 3ux8_A Excinuclease ABC, A sub 55.6 3.5 0.00012 50.7 1.4 23 292-314 347-369 (670)
484 3p8d_A Medulloblastoma antigen 55.5 30 0.001 29.5 6.7 40 166-205 18-58 (67)
485 3lxx_A GTPase IMAP family memb 55.4 5.4 0.00018 41.8 2.6 22 293-314 29-50 (239)
486 2r2a_A Uncharacterized protein 55.4 5.5 0.00019 41.2 2.6 18 295-312 7-24 (199)
487 2fn4_A P23, RAS-related protei 55.4 5 0.00017 39.1 2.3 21 294-314 10-30 (181)
488 2r6a_A DNAB helicase, replicat 55.0 7 0.00024 45.5 3.8 29 291-319 201-229 (454)
489 4emc_A Monopolin complex subun 54.9 36 0.0012 34.7 8.3 18 1020-1037 38-55 (190)
490 3mq7_A Bone marrow stromal ant 54.8 1.3E+02 0.0045 28.2 11.3 17 1018-1034 73-89 (121)
491 1qhl_A Protein (cell division 54.7 3 0.0001 44.3 0.5 24 296-319 30-53 (227)
492 1nrj_B SR-beta, signal recogni 54.7 6 0.00021 40.3 2.8 22 293-314 12-33 (218)
493 1u0j_A DNA replication protein 54.6 13 0.00044 40.4 5.5 36 282-317 91-128 (267)
494 1m2o_B GTP-binding protein SAR 54.6 5.6 0.00019 39.9 2.5 33 282-314 12-44 (190)
495 2fh5_B SR-beta, signal recogni 54.6 6.4 0.00022 40.0 3.0 25 290-314 4-28 (214)
496 2h58_A Kinesin-like protein KI 54.5 7 0.00024 43.8 3.5 34 276-310 65-98 (330)
497 2e5p_A Protein PHF1, PHD finge 54.3 67 0.0023 27.3 8.4 52 155-206 10-63 (68)
498 1z0f_A RAB14, member RAS oncog 54.1 6.4 0.00022 38.2 2.8 20 296-315 18-37 (179)
499 2a9k_A RAS-related protein RAL 54.1 6.4 0.00022 38.5 2.8 20 296-315 21-40 (187)
500 3cio_A ETK, tyrosine-protein k 53.9 10 0.00035 41.6 4.6 48 274-321 78-133 (299)
No 1
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=100.00 E-value=1.4e-214 Score=2028.51 Aligned_cols=810 Identities=42% Similarity=0.702 Sum_probs=738.7
Q ss_pred ccCCcEEEEEcCCCCEEEEEEEEe---eCCeEEEEecCCeEEEEeC----CCccc-CCCCcccCcCCccccccCCchhHH
Q 001346 155 IKKKLRVWCRLEDGKWESGMIQST---SGDEAFVLLSNGNVVKVST----GELLP-ANPDILEGVDDLIQLSYLNEPSVL 226 (1095)
Q Consensus 155 ~~~~~~vW~~~~~~~~~~~~v~~~---~~~~~~v~~~~g~~~~v~~----~~~~~-~np~~~~~~~Dl~~L~~LnE~svL 226 (1095)
..+|.+||+|+++++|.+|+|++. +++.++|.+++|++++|+. +++.| +||+.++++|||+.|++|||++||
T Consensus 7 ~~~g~~vwv~~~~~~~~~~~v~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~np~~~~~~~Dl~~L~~l~e~~vl 86 (1080)
T 2dfs_A 7 YTKYARVWIPDPEEVWKSAELLKDYKPGDKVLQLRLEEGKDLEYCLDPKTKELPPLRNPDILVGENDLTALSYLHEPAVL 86 (1080)
T ss_dssp CCTTCEEEEEETTTEEEEEECSSCCCTTCSEEECCCSSSSCCEEECCTTTCCCCCBCCCGGGSSCSBSTTCSSCSHHHHH
T ss_pred cccCCEEEEECCCCceEEEEEEeeecCCCceEEEEECCCCEEEEecCCcccccccccCcccccchhhhhhhhhcchHHHH
Confidence 345899999999999999999873 3446888888999888876 45777 699999999999999999999999
Q ss_pred HHHHHHh-hcCccccccCCcEEEEcCCCCCCCCChHHHHHHcccCCC--CCchhHHHHHHHHHHhhCCCceEEEEcCCCC
Q 001346 227 NNIQYRY-SRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNEMMGDGVNQSIIISGESG 303 (1095)
Q Consensus 227 ~~L~~Ry-~~~~iYT~~G~iLiavNP~k~l~~Y~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m~~~~~~QsIiisGESG 303 (1095)
|||+.|| .++.||||+|+||||||||+++|+|+++++..|+++... ||||||||+.||++|+.+++|||||||||||
T Consensus 87 ~nL~~Ry~~~~~iYTy~G~iLiavNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESG 166 (1080)
T 2dfs_A 87 HNLKVRFIDSKLIYTYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESG 166 (1080)
T ss_dssp HHHHHHHHTTCCCEEEETTEEEEECCSSCCSCSSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTT
T ss_pred HHHHHHHHhcCCchhccCceeEEecCCcccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCC
Confidence 9999999 999999999999999999999999999999999988654 8999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHhcCCC--cchHHHHHhhhHHHHHhcccccCCCCCCCccccEEEEEEcCCCceeeeEeeeeeccc
Q 001346 304 AGKTETAKFAMQYLAALGGGS--EGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLEK 381 (1095)
Q Consensus 304 AGKTe~~K~il~yLa~~~~~~--~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~~~g~i~Ga~i~~yLLEk 381 (1095)
|||||++|+||+|||+++++. ..|+++|+++||||||||||||++|||||||||||+|+||.+|.|+||+|.+|||||
T Consensus 167 AGKTe~~K~i~~yla~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~i~F~~~g~i~Ga~i~~yLLEK 246 (1080)
T 2dfs_A 167 AGKTVSAKYAMRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEK 246 (1080)
T ss_dssp SSHHHHHHHHHHHHHHTTTCCTTTCTHHHHHHHHHHHHHHHEEEETTEEEEECSEEEEEEEECTTCCEEEEEEEEECCCC
T ss_pred CCccchHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHhcCCcCCCCCCccccceeEEEEECCCCCEeeecceeEeecC
Confidence 999999999999999998764 489999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCcccchhhhhcCCChhhHHhcCCCCCCCCCcccCCCccccCCcchHHHHHHHHHHHhhcCCCHHHHHHHH
Q 001346 382 SRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLMEALDIVLIRKEDREQTF 461 (1095)
Q Consensus 382 sRVv~~~~gERnfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~l~~Al~~lG~~~~e~~~i~ 461 (1095)
||||.|++||||||||||||+|+++++++.|+|.++.+|+||++++|..++++||+++|..++.||++|||+++++.+||
T Consensus 247 sRVv~q~~~ERnfHIFYqllag~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~dD~~~f~~~~~A~~~lg~~~~e~~~i~ 326 (1080)
T 2dfs_A 247 SRVVFQAEEERNYHIFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIF 326 (1080)
T ss_dssp GGGTCCCTTCCSBHHHHHHHHTTTSSGGGGTCCCCTTTCTTTSTTSCCSCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred ceeeccCCCCCcchhHHHHHcCCChHHHHHccCCCHHhcCcccCCCCCCCCCccHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCceEEEecCCCceee-cChHHHHHHHHhcCCCHHHHHHhHhhcEEeeCCceEEecCCHHHHHHHHHHHHH
Q 001346 462 AMLAAVLWLGNISFQVIDNENHVEV-IADEAVTTAAMLMGCSSDELMLALSTHKIQAGKDSIAKKLTLQQAIDSRDALAK 540 (1095)
Q Consensus 462 ~iLaAILhLGni~F~~~~~~~~~~~-~~~~~l~~aa~LLgv~~~~L~~~L~~~~~~~~~e~i~~~l~~~qA~~~rDalak 540 (1095)
+|||||||||||+|...++ +.+.+ .+++.++.||.||||++++|.++||++++.+++|.+++++|++||.++||||||
T Consensus 327 ~ilaaILhLGni~F~~~~~-~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~i~~~~~~~qa~~~rdalak 405 (1080)
T 2dfs_A 327 RILAGILHLGNVEFASRDS-DSCAIPPKHDPLTIFCDLMGVDYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAK 405 (1080)
T ss_dssp HHHHHHHHHTTCCCEEETT-TEEECCSSCHHHHHHHHHHTCCHHHHHHHHHEEEECC----EEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCceEEecCC-cceeecCChHHHHHHHHHhCCCHHHHHHHhcccEEEeCCceEEeCCCHHHHHHHHHHHHH
Confidence 9999999999999987654 33444 678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccccCCCCccceeEeecccCcccCCCCChhHHHhhhhhHHHHHHHHHhhhhhhHhhhhhcCCce
Q 001346 541 FIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDW 620 (1095)
Q Consensus 541 ~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~eY~~EgI~~ 620 (1095)
+||++||+|||.+||.+|.+.. ....+||||||||||+|+.|||||||||||||+|||+||+|+|+.||+||.+|||+|
T Consensus 406 ~lY~~LF~wlV~~iN~~l~~~~-~~~~~IgvLDI~GFE~f~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w 484 (1080)
T 2dfs_A 406 HIYANLFNWIVDHVNKALHSTV-KQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPW 484 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSS-CCCEEEEEEEECCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHHHHHhhcccc-ccCceEEeeccCCccccCcCCHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhcCCcc
Confidence 9999999999999999998754 346899999999999999999999999999999999999999999999999999999
Q ss_pred eeecccChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHh-CCCCccccCC--CCCeEEeccCccccccccc
Q 001346 621 TRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHL-GSNSCFKGER--GRAFSIRHYAGEVPYDTNG 697 (1095)
Q Consensus 621 ~~i~f~dN~~~ldLie~~p~Gll~lLDeE~~~p~~sd~~f~~kl~~~~-~~~~~f~~~~--~~~F~I~HyaG~V~Y~~~g 697 (1095)
+.|+|.||++|||||+++ .|||+||||||.+|++||.+|++||+++| ++|++|.+++ ..+|+|+||||+|+|+++|
T Consensus 485 ~~i~f~dn~~~idlie~~-~Gil~lLdee~~~p~~tD~~f~~kl~~~~~~~~~~f~~p~~~~~~F~I~HyAG~V~Y~~~g 563 (1080)
T 2dfs_A 485 TLIDFYDNQPCINLIEAK-MGVLDLLDEECKMPKGSDDTWAQKLYNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQCEG 563 (1080)
T ss_dssp TCCCCCCCHHHHHHHHST-TSHHHHHHHHTTSTTCCHHHHHHHHHHHHBTTBSSEECCTTCSSEEEEECSSCEEEEECTT
T ss_pred ccccccccHHHHHHHhcC-CceeeeccccccCCCCChHHHHHHHHHHhhcCCCCccCCCCCCCceEEEecceEEEEehhh
Confidence 999999999999999987 99999999999999999999999999988 9999998775 5799999999999999999
Q ss_pred hhhhccCcchHHHHHHHhhc-hHHH-HHHhhcccCCCC---CC-------------CCCCCCCCCCCcCccchHHHHHHH
Q 001346 698 FLEKNRDPLQTDIIQLLSSC-TCQV-LQLFASKMLKPS---PK-------------PAASSQPGALDTQKQSVGTKFKGQ 759 (1095)
Q Consensus 698 fleKN~D~l~~d~~~ll~~S-~~~l-~~lf~~~~~~~~---~~-------------~~~~~~~~~~~~~~~tv~~~fk~q 759 (1095)
||+||+|+|++|++++|++| ++++ ..+|.......+ .. +..+...++...+++||+++|+.|
T Consensus 564 fleKN~D~l~~~~~~ll~~S~~~~~v~~lf~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~fk~s 643 (1080)
T 2dfs_A 564 FLEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKAISPTSATPSGRVPLSRTPVKPAKARPGQTSKEHKKTVGHQFRNS 643 (1080)
T ss_dssp HHHHHBCCCCHHHHHHHHTCSSCSHHHHSCC-------------------------------------CCCBHHHHHHHH
T ss_pred HHHhccccccHHHHHHHHcccccHHHHHHhcccccccccccccccccccccccccccccccccccccCCCCcHHHHHHHH
Confidence 99999999999999999999 8876 567764321110 00 000000012244578999999999
Q ss_pred HHHHHHHHhccCCeeeEeccCCCCCCCcccchhHHHHhhhhhchhHHHHHHhhCCCcccchhhHHHhhhccccccccCCC
Q 001346 760 LFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQLSQD 839 (1095)
Q Consensus 760 L~~L~~~L~~t~~hfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~~d 839 (1095)
|+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|||+|.|||+|++|.+|+.||++|++......|
T Consensus 644 L~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~eF~~RY~~L~~~~~~~~d 723 (1080)
T 2dfs_A 644 LHLLMETLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLRACGVLETIRISAAGFPSRWTYQEFFSRYRVLMKQKDVLSD 723 (1080)
T ss_dssp HHHHHHHHHSSEEEEEEEECCCSSCCTTCCCHHHHHHHHHTTTHHHHHHHHTTSCCEEEEHHHHHHHHTTTSCGGGCCSS
T ss_pred HHHHHHHHHhcCCeeEEEecCCCCCCchhcCHHhhHHHHhhcccHHHHhHHhcCCCchhhHHHHHHHHHHHCCccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987665558
Q ss_pred hHHHHHHHHHhcCCCCcceeeceeeeeeccchhHHhhhhhhhHHH-HHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHH
Q 001346 840 PLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRKQVLQ-AIIRLQKCFRGYQARSRFRELCNGVITLQSFARG 918 (1095)
Q Consensus 840 ~~~~~~~iL~~~~l~~~~yqiGkTKVFLr~g~l~~LE~~R~~~l~-aai~IQa~~Rg~~aRr~y~~lr~aai~IQs~~Rg 918 (1095)
++..|+.||..++++++.|++|+||||||.+.+..||+.|...+. +|+.||++||||++|++|++++.+++.||++|||
T Consensus 724 ~k~~~~~il~~~~~~~~~~~~G~TKVF~r~g~l~~LE~~R~~~l~~aa~~IQa~~Rg~l~Rk~~~~~r~aai~IQ~~~Rg 803 (1080)
T 2dfs_A 724 RKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYLEKIRADKLRAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRG 803 (1080)
T ss_dssp HHHHHHHHHTTTSCCGGGEEECSSEEEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCChhhheeccccchhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987765 7899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhh-hhccchhhH---------HhhhHHHHHHHHHHHHHHHHHHHH-HHH
Q 001346 919 ENTRRRHASLGKS-CSAVVPEIR---------DEQLREIICLQSAIRGWLVRKQLK-MHK 967 (1095)
Q Consensus 919 ~~aRr~y~~lr~~-AA~~IQ~~~---------~~~~~Aai~IQs~~Rg~laRr~~~-l~~ 967 (1095)
+++|+.|..+++. ||++||++| ...+.+++.||++|||+++|+.++ ++.
T Consensus 804 ~~aR~~~~~lr~~~AAi~IQs~~Rg~~~Rk~y~~lr~aai~IQs~~Rg~laRr~~~~lr~ 863 (1080)
T 2dfs_A 804 HQARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLR 863 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcccccccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888766 899999988 345677888888888888888777 543
No 2
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=100.00 E-value=5.7e-206 Score=1894.57 Aligned_cols=764 Identities=40% Similarity=0.685 Sum_probs=690.9
Q ss_pred CcEEEEEcCCCCEEEEEEEEeeCCeEEEEec-CCeEEEEeCCCcccCCCCcccCcCCccccccCCchhHHHHHHHHhhcC
Q 001346 158 KLRVWCRLEDGKWESGMIQSTSGDEAFVLLS-NGNVVKVSTGELLPANPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRD 236 (1095)
Q Consensus 158 ~~~vW~~~~~~~~~~~~v~~~~~~~~~v~~~-~g~~~~v~~~~~~~~np~~~~~~~Dl~~L~~LnE~svL~~L~~Ry~~~ 236 (1095)
+.+||+|+++++|.+|+|++.+++.++|.+. +|++++|+.+++.|+||+.++++|||+.|++|||++|||||+.||.++
T Consensus 31 ~~~vWv~~~~~~~~~~~v~~~~~~~~~v~~~~~g~~~~v~~~~~~~~np~~~~~~~Dl~~L~~l~E~svL~nL~~Ry~~~ 110 (837)
T 1kk8_A 31 KKNCWVPDEKEGFASAEIQSSKGDEITVKIVADSSTRTVKKDDIQSMNPPKFEKLEDMANMTYLNEASVLYNLRSRYTSG 110 (837)
T ss_dssp TTEEEEEETTTEEEEEEEEEEETTEEEEEETTTCCEEEEEGGGCEECCCGGGTTCSBGGGSSCCSHHHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCeeEEEEEeecCCeEEEEEcCCCceEEeeHHHccccCchhhcchhhhhhhhcccHHHHHHHHHHHHhcC
Confidence 6799999999999999999999999999974 789999999999999999999999999999999999999999999999
Q ss_pred ccccccCCcEEEEcCCCCCCCCChHHHHHHcccCCC--CCchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHHHHHH
Q 001346 237 MIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAM 314 (1095)
Q Consensus 237 ~iYT~~G~iLiavNP~k~l~~Y~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il 314 (1095)
+||||+|++|||||||+++|+|+++++..|+++... ||||||||+.||++|+++++||||||||||||||||++|+||
T Consensus 111 ~IYTy~G~iLiavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~i~ 190 (837)
T 1kk8_A 111 LIYTYSGLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVI 190 (837)
T ss_dssp CCEEEETTEEEEECCSSCCSTTSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTSEEEEEEECSTTSSHHHHHHHHH
T ss_pred CceeeccceeEEeCCCcCCCCCCHHHHHHhcCCCcCCCCCcHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCchhhHHHHH
Confidence 999999999999999999999999999999988654 899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCC------------cchHHHHHhhhHHHHHhcccccCCCCCCCccccEEEEEEcCCCceeeeEeeeeecccc
Q 001346 315 QYLAALGGGS------------EGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLEKS 382 (1095)
Q Consensus 315 ~yLa~~~~~~------------~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~~~g~i~Ga~i~~yLLEks 382 (1095)
+|||+++++. +.|+++|+++||||||||||||+||||||||||||+|+||.+|.|+||+|++||||||
T Consensus 191 ~yla~~~~~~~~~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~YLLEKS 270 (837)
T 1kk8_A 191 MYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAGADIETYLLEKS 270 (837)
T ss_dssp HHHHHHSCCCCCC--------CCCHHHHHHHHHHHHHHHHEECCSSCTTEESSEEEEEEEECTTSSEEEEEEEEECCCGG
T ss_pred HHHHHhcccCCcccccccccccccHHHHHHHHHHHHHHhcCccCCCCCCCCCceeEEEEEECCCCCEeeeEEEEEeccCc
Confidence 9999998643 4689999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCcccchhhhhcCCChhhHHhcCC-CCCCCCCcccCCCccccCCcchHHHHHHHHHHHhhcCCCHHHHHHHH
Q 001346 383 RVVQLAAGERSYHIFYQLCAGAPSFLKERLNL-KVANDYNYLNQSECLTIDGVDDAQNFHNLMEALDIVLIRKEDREQTF 461 (1095)
Q Consensus 383 RVv~~~~gERnfHIFYqLl~G~~~~~~~~l~L-~~~~~y~yL~~~~~~~~~~~dD~~~f~~l~~Al~~lG~~~~e~~~i~ 461 (1095)
|||.|++||||||||||||+|+++++|+.|+| .++.+|+||+++. ..++++||+++|..++.||++|||+++|+..||
T Consensus 271 RVv~q~~gERNfHIFYqLlaG~~~~~~~~l~L~~~~~~y~yL~~g~-~~~~~~dD~~~f~~~~~Am~~lGfs~~e~~~i~ 349 (837)
T 1kk8_A 271 RVTYQQSAERNYHIFYQICSNAIPELNDVMLVTPDSGLYSFINQGC-LTVDNIDDVEEFKLCDEAFDILGFTKEEKQSMF 349 (837)
T ss_dssp GGTCCCTTCCSBHHHHHHTSCSSGGGHHHHTCCSCGGGCTTTCSSC-SCBTTBCHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred eeeeecCCCCceeehHHHHcCCCHHHHHHhCCCCChhhcccccCCC-cccCCcChHHHHHHHHHHHHhcCcCHHHHHHHH
Confidence 99999999999999999999999999999999 7899999999975 788999999999999999999999999999999
Q ss_pred HHHHHHHHhcCceEEEecCCCceeecChHHHHHHHHhcCCCHHHHHHhHhhcEEeeCCceEEecCCHHHHHHHHHHHHHH
Q 001346 462 AMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKDSIAKKLTLQQAIDSRDALAKF 541 (1095)
Q Consensus 462 ~iLaAILhLGni~F~~~~~~~~~~~~~~~~l~~aa~LLgv~~~~L~~~L~~~~~~~~~e~i~~~l~~~qA~~~rDalak~ 541 (1095)
+|||||||||||+|...++++.+++.+.+.++.||.||||++++|.++|++|++.+++|.+++++|++||.++||||||+
T Consensus 350 ~ilAaILhLGNi~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~aL~~~~~~~~~e~v~~~~~~~qA~~~rdalaK~ 429 (837)
T 1kk8_A 350 KCTASILHMGEMKFKQRPREEQAESDGTAEAEKVAFLCGINAGDLLKALLKPKVKVGTEMVTKGQNMNQVVNSVGALAKS 429 (837)
T ss_dssp HHHHHHHHHTTCCEEC----CCCEESCSHHHHHHHHHHTSCHHHHHHHHHSCEEC----CEECCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccceEEecCCCCccccCCHHHHHHHHHHHCCCHHHHHHHhcCcEEEcCCceEEeCCCHHHHHHHHHHHHHH
Confidence 99999999999999976666778889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccccCCCCccceeEeecccCcccCCCCChhHHHhhhhhHHHHHHHHHhhhhhhHhhhhhcCCcee
Q 001346 542 IYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWT 621 (1095)
Q Consensus 542 LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~eY~~EgI~~~ 621 (1095)
||++||+|||.+||.+|... .....+||||||||||+|+.|||||||||||||+|||+||+|+|+.||+||.+|||+|+
T Consensus 430 lY~rLF~wlV~~IN~~l~~~-~~~~~~IGvLDI~GFE~f~~NsFEQlcINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~ 508 (837)
T 1kk8_A 430 LYDRMFNWLVRRVNKTLDTK-AKRNYYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWE 508 (837)
T ss_dssp HHHHHHHHHHHHHHHHHCCC-CCCCEEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHhccCC-CCCcceEEEEecCCccccccccHHHHHHHHhhHHHHHHHHHhhhHHHHHHhhhcCCcee
Confidence 99999999999999999853 34568999999999999999999999999999999999999999999999999999999
Q ss_pred eecc-cChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHH-HHHhCCCCccccCC--------CCCeEEeccCccc
Q 001346 622 RVEF-EDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKL-KQHLGSNSCFKGER--------GRAFSIRHYAGEV 691 (1095)
Q Consensus 622 ~i~f-~dN~~~ldLie~~p~Gll~lLDeE~~~p~~sd~~f~~kl-~~~~~~~~~f~~~~--------~~~F~I~HyaG~V 691 (1095)
.|+| .||++|||||++ |.|||+||||||.+|++||.+|++|| .+++++|++|..++ ..+|+|+||||+|
T Consensus 509 ~i~f~~dn~~~idLiek-p~GIlslLDEec~~p~~tD~tf~~kl~~~~~~~~~~f~~p~~~~~k~~~~~~F~I~HyAG~V 587 (837)
T 1kk8_A 509 FIDFGMDLQMCIDLIEK-PMGILSILEEECMFPKADDKSFQDKLYQNHMGKNRMFTKPGKPTRPNQGPAHFELHHYAGNV 587 (837)
T ss_dssp SCCCCHHHHHHHHHHHS-TTSHHHHHHHHTTCTTCCHHHHHHHHHHHHTTTCSSEECCCSCSSTTCCCCSEEEEETTEEE
T ss_pred ecccccCHHHHHHHHhc-CCcHHHHHHHHhcCCCCChHHHHHHHHHHhcCCCcCccCCCccccccccCCceEEeeccCcc
Confidence 9999 599999999997 89999999999999999999999996 56789999997654 5689999999999
Q ss_pred cccccchhhhccCcchHHHHHHHhhchHHH-HHHhhcccCCCCCCCCCCCCCCCCCcCccchHHHHHHHHHHHHHHHhcc
Q 001346 692 PYDTNGFLEKNRDPLQTDIIQLLSSCTCQV-LQLFASKMLKPSPKPAASSQPGALDTQKQSVGTKFKGQLFKLMHQLENT 770 (1095)
Q Consensus 692 ~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l-~~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~fk~qL~~L~~~L~~t 770 (1095)
+|+++|||+||+|+|++|++++|++|++++ ..+|.......+ .+.+..+.....+||+++||.||+.||++|++|
T Consensus 588 ~Y~~~gfleKNkD~l~~~~~~ll~~S~~~~v~~Lf~~~~~~~g----~~~~~k~~~~~~~Tv~~~fk~sL~~Lm~~L~~t 663 (837)
T 1kk8_A 588 PYSITGWLEKNKDPINENVVALLGASKEPLVAELFKAPEEPAG----GGKKKKGKSSAFQTISAVHRESLNKLMKNLYST 663 (837)
T ss_dssp EECCSSHHHHHSCCCCHHHHHHHHTCSSHHHHHHTCC----------------------CCHHHHHHHHHHHHHHHHTTE
T ss_pred cccHHHHHHhccccccHHHHHHHHhchHHHHHHHhcccccccC----CCCCCCCCCCCCCchHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999999886 568865321100 011111111346899999999999999999999
Q ss_pred CCeeeEeccCCCCCCCcccchhHHHHhhhhhchhHHHHHHhhCCCcccchhhHHHhhhcccccccc--CCChHHHHHHHH
Q 001346 771 RPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQL--SQDPLSISVAVL 848 (1095)
Q Consensus 771 ~~hfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~--~~d~~~~~~~iL 848 (1095)
+||||||||||+.+.|+.||..+|++||||+||||+|||+|.|||+|++|.+|++||++|.+...+ ..|+++.|+.||
T Consensus 664 ~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~R~~f~eF~~RY~~L~~~~~~~~~~d~k~~~~~ll 743 (837)
T 1kk8_A 664 HPHFVRCIIPNELKQPGLVDAELVLHQLQCNGVLEGIRICRKGFPSRLIYSEFKQRYSILAPNAIPQGFVDGKTVSEKIL 743 (837)
T ss_dssp EEEEEEEECCCSSCCTTCCCHHHHHHHHTTSSSCC-----CCCSCEEEEHHHHHHHHGGGSGGGCCC---CHHHHHHHHH
T ss_pred CCeeeeeeCCCccCCcccccchheeeeccccCccHHHHHHHHhccccccHHHHHHHHHHhcccccccCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999988665 358999999999
Q ss_pred HhcCCCCcceeeceeeeeeccchhHHhhhhhhhHHH-HHHHHHHHHhhhhhhhhhhhh---hhHHHHHHHHHHHHHHHHH
Q 001346 849 QQFNVLPEMYQVGYTKLYLRSGQLAALEDRRKQVLQ-AIIRLQKCFRGYQARSRFREL---CNGVITLQSFARGENTRRR 924 (1095)
Q Consensus 849 ~~~~l~~~~yqiGkTKVFLr~g~l~~LE~~R~~~l~-aai~IQa~~Rg~~aRr~y~~l---r~aai~IQs~~Rg~~aRr~ 924 (1095)
+.+++++++|++|+||||||.+++..||++|...+. .++.||++||||++|++|+++ +.++++||+.||++++||.
T Consensus 744 ~~~~~~~~~~~~G~TKVF~r~~~~~~LE~~r~~~l~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~ 823 (837)
T 1kk8_A 744 AGLQMDPAEYRLGTTKVFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN 823 (837)
T ss_dssp HHHTCCGGGEEECSSEEEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCccceeecCEEEEehhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999988775 567889988888888888877 4566666666666666665
Q ss_pred HHHH
Q 001346 925 HASL 928 (1095)
Q Consensus 925 y~~l 928 (1095)
|..+
T Consensus 824 ~~w~ 827 (837)
T 1kk8_A 824 WQWW 827 (837)
T ss_dssp CHHH
T ss_pred hHHH
Confidence 5433
No 3
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=100.00 E-value=1.1e-203 Score=1865.67 Aligned_cols=751 Identities=43% Similarity=0.719 Sum_probs=691.4
Q ss_pred cCCcEEEEEcCCCCEEEEEEEEe---eCCeEEEEecCCeEEEEeC----CCccc-CCCCcccCcCCccccccCCchhHHH
Q 001346 156 KKKLRVWCRLEDGKWESGMIQST---SGDEAFVLLSNGNVVKVST----GELLP-ANPDILEGVDDLIQLSYLNEPSVLN 227 (1095)
Q Consensus 156 ~~~~~vW~~~~~~~~~~~~v~~~---~~~~~~v~~~~g~~~~v~~----~~~~~-~np~~~~~~~Dl~~L~~LnE~svL~ 227 (1095)
.+|.+||+|+++++|.+|+|++. +++.++|.+++|++++|+. +++.| +||+.++++|||+.|++|||++|||
T Consensus 8 ~~g~~vwv~~~~~~~~~~~v~~~~~~~~~~~~v~~~~g~~~~v~~~~~~~~~~~~~np~~~~~~~Dl~~L~~l~E~svL~ 87 (795)
T 1w7j_A 8 TKYARVWIPDPEEVWKSAELLKDYKPGDKVLQLRLEEGKDLEYCLDPKTKELPPLRNPDILVGENDLTALSYLHEPAVLH 87 (795)
T ss_dssp CTTCEEEEEETTTEEEEEEESSCCCTTCSEEEEECSSSSEEEEECCTTTTCCCCBCCCGGGTTCSSSTTCSCCSHHHHHH
T ss_pred ccCCEEEEECCCCceEEEEEEeeccCCCceEEEEECCCCEEEEeccCcccccccccCcchhccccchhhhhcccHHHHHH
Confidence 35889999999999999999873 3456899999999999887 45777 6999999999999999999999999
Q ss_pred HHHHHh-hcCccccccCCcEEEEcCCCCCCCCChHHHHHHcccCCC--CCchhHHHHHHHHHHhhCCCceEEEEcCCCCC
Q 001346 228 NIQYRY-SRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNEMMGDGVNQSIIISGESGA 304 (1095)
Q Consensus 228 ~L~~Ry-~~~~iYT~~G~iLiavNP~k~l~~Y~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m~~~~~~QsIiisGESGA 304 (1095)
||+.|| .+++||||+|++|||||||+++|+|+++++..|+++... ||||||||+.||++|+++++||||||||||||
T Consensus 88 nL~~Ry~~~~~IYTy~G~iLiavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGA 167 (795)
T 1w7j_A 88 NLKVRFIDSKLIYTYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGA 167 (795)
T ss_dssp HHHHHHHHHCCCEEEETTEEEEECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTS
T ss_pred HHHHHHHhcccchhccCcceEEecCccccCcCCHHHHHHHcCCCccCCCccHhHHHHHHHHHhHhcCCCeEEEEeCCCCC
Confidence 999999 999999999999999999999999999999999988654 89999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHhcCCC--cchHHHHHhhhHHHHHhcccccCCCCCCCccccEEEEEEcCCCceeeeEeeeeecccc
Q 001346 305 GKTETAKFAMQYLAALGGGS--EGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLEKS 382 (1095)
Q Consensus 305 GKTe~~K~il~yLa~~~~~~--~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~~~g~i~Ga~i~~yLLEks 382 (1095)
||||++|++|+|||+++++. ..|+++|+++||||||||||||+||||||||||||+|+||.+|.|+||+|++||||||
T Consensus 168 GKTe~tK~i~~yla~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~YLLEKS 247 (795)
T 1w7j_A 168 GKTVSAKYAMRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKS 247 (795)
T ss_dssp SHHHHHHHHHHHHHHHTCCSSSSCHHHHHHHHHHHHHHHHEECCSSCTTEECSEEEEEEEECTTSCEEEEEEEEECCCGG
T ss_pred CcchHHHHHHHHHHhhcCCCCccchHHHHHHHHHHHHHhcCccCCCCCCccccceEEEEEECCCCCEeeeeceEEecccc
Confidence 99999999999999998764 4899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCcccchhhhhcCCChhhHHhcCCCCCCCCCcccCCCccccCCcchHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 001346 383 RVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLMEALDIVLIRKEDREQTFA 462 (1095)
Q Consensus 383 RVv~~~~gERnfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~l~~Al~~lG~~~~e~~~i~~ 462 (1095)
|||.|++||||||||||||+|+++++++.|+|.++.+|+||++++|..++++||+++|..++.||++|||+++++..||+
T Consensus 248 RVv~q~~gERNfHIFYqLlag~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~dD~~~f~~~~~Am~~lG~s~~e~~~i~~ 327 (795)
T 1w7j_A 248 RVVFQAEEERNYHIFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFR 327 (795)
T ss_dssp GGTCCCTTCCSBHHHHHHHHTTTSGGGGGGCCCCTTTSHHHHTTSCCCCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred eEeccCCCCCchHhHHHHHcCCCHHHHHHccCCChHhCccccCCCCCcCCCccHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCceEEEecCCCceee-cChHHHHHHHHhcCCCHHHHHHhHhhcEEeeCCceEEecCCHHHHHHHHHHHHHH
Q 001346 463 MLAAVLWLGNISFQVIDNENHVEV-IADEAVTTAAMLMGCSSDELMLALSTHKIQAGKDSIAKKLTLQQAIDSRDALAKF 541 (1095)
Q Consensus 463 iLaAILhLGni~F~~~~~~~~~~~-~~~~~l~~aa~LLgv~~~~L~~~L~~~~~~~~~e~i~~~l~~~qA~~~rDalak~ 541 (1095)
|||||||||||+|...++ +.+.+ .+++.++.||.||||++++|.++|++|++.+++|.++++++++||.++||||||+
T Consensus 328 ilaaILhLGNi~F~~~~~-~~~~v~~~~~~l~~~a~LLgv~~~~L~~aL~~~~~~~~~e~v~~~~~~~qA~~~rdalaK~ 406 (795)
T 1w7j_A 328 ILAGILHLGNVEFASRDS-DSCAIPPKHDPLTIFCDLMGVDYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKH 406 (795)
T ss_dssp HHHHHHHHHTCCCEEEET-TEEECCTTCHHHHHHHHHHTCCHHHHHHHHSEEEEECSSCEEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCceEeecCC-cceeecCChHHHHHHHHHhCCCHHHHHHHhcccEEEeCCceecCCCCHHHHHHHHHHHHHH
Confidence 999999999999987654 33444 6789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccccCCCCccceeEeecccCcccCCCCChhHHHhhhhhHHHHHHHHHhhhhhhHhhhhhcCCcee
Q 001346 542 IYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWT 621 (1095)
Q Consensus 542 LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~eY~~EgI~~~ 621 (1095)
||++||+|||.+||.+|.+.. ....+||||||||||+|+.|||||||||||||||||+||+|+|+.||+||.+|||+|+
T Consensus 407 lY~rLF~wlV~~IN~~l~~~~-~~~~~IGvLDI~GFE~f~~NsFEQlcINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~ 485 (795)
T 1w7j_A 407 IYANLFNWIVDHVNKALHSTV-KQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWT 485 (795)
T ss_dssp HHHHHHHHHHHHHHHHHCCSS-CCSEEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHHHHHHhhcCCc-cccceEEeeccCcccccCcCCHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 999999999999999998754 3468999999999999999999999999999999999999999999999999999999
Q ss_pred eecccChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHh-CCCCccccCC--CCCeEEeccCccccccccch
Q 001346 622 RVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHL-GSNSCFKGER--GRAFSIRHYAGEVPYDTNGF 698 (1095)
Q Consensus 622 ~i~f~dN~~~ldLie~~p~Gll~lLDeE~~~p~~sd~~f~~kl~~~~-~~~~~f~~~~--~~~F~I~HyaG~V~Y~~~gf 698 (1095)
.|+|.||++|||||+++ .|||+||||||.+|++||.+|++||++++ ++|++|.+++ ..+|+|+||||+|+|+++||
T Consensus 486 ~i~f~DN~~~idLie~~-~GIlslLDEec~~p~~tD~~f~~kl~~~~~~~~~~f~~p~~~~~~F~I~HyAG~V~Y~~~gf 564 (795)
T 1w7j_A 486 LIDFYDNQPCINLIEAK-MGVLDLLDEECKMPKGSDDTWAQKLYNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQCEGF 564 (795)
T ss_dssp GCCCCCCHHHHHHHHST-TSHHHHHHHHHTSTTCCHHHHHHHHHHHHTTTCTTEECCTTCSSEEEEECSSCEEEEECTTH
T ss_pred ccCccccHHHHHHHHhc-CCHHHhhhhhccCCCCChHHHHHHHHHHhhccCCccccCCCCCCceEEEecceEEEEechhH
Confidence 99999999999999997 99999999999999999999999999987 9999998775 57999999999999999999
Q ss_pred hhhccCcchHHHHHHHhhch-HHH-HHHhhcccCCCC---C----------CCCC---CCCCCCCCcCccchHHHHHHHH
Q 001346 699 LEKNRDPLQTDIIQLLSSCT-CQV-LQLFASKMLKPS---P----------KPAA---SSQPGALDTQKQSVGTKFKGQL 760 (1095)
Q Consensus 699 leKN~D~l~~d~~~ll~~S~-~~l-~~lf~~~~~~~~---~----------~~~~---~~~~~~~~~~~~tv~~~fk~qL 760 (1095)
|+||+|+|+++++++|++|+ +++ ..+|.......+ . ...+ +...++...+++||+++||.||
T Consensus 565 leKNkD~l~~~~~~ll~~S~~~~~v~~lf~~~~~~~~~~~~~~s~~~~~s~~~~~~~~~~~~~~~~~~~~Tv~~~fk~sL 644 (795)
T 1w7j_A 565 LEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKAISPTSATPSGRVPLSRTPVKPAKARPGQTSKEHKKTVGHQFRNSL 644 (795)
T ss_dssp HHHHHCCCCHHHHHHHHTCSSCSHHHHTTC---------------------------------------CCHHHHHHHHH
T ss_pred HhhccccccHHHHHHHHhccccHHHHHHhccccccccccccccccccccccccccccccccccccCCCCCcHHHHHHHHH
Confidence 99999999999999999999 876 567865331100 0 0000 0000122345689999999999
Q ss_pred HHHHHHHhccCCeeeEeccCCCCCCCcccchhHHHHhhhhhchhHHHHHHhhCCCcccchhhHHHhhhccccccccCCCh
Q 001346 761 FKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQLSQDP 840 (1095)
Q Consensus 761 ~~L~~~L~~t~~hfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~~d~ 840 (1095)
+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|||+|+|||+|++|.+|++||++|++......|+
T Consensus 645 ~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~f~eF~~RY~~L~~~~~~~~d~ 724 (795)
T 1w7j_A 645 HLLMETLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLRACGVLETIRISAAGFPSRWTYQEFFSRYRVLMKQKDVLSDR 724 (795)
T ss_dssp HHHHHHHHTSEEEEEEEECCCTTCCTTCCCHHHHHHHHHHTTHHHHHHHHHHSCCEEEEHHHHHHHHGGGSCGGGCCSCH
T ss_pred HHHHHHHhcCCCeEEEEeCCCCcCChhhcCcccccchhhhCChHHHHHHHHcCCCccccHHHHHHHHHHhCCcccCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876655599
Q ss_pred HHHHHHHHHhcCCCCcceeeceeeeeeccchhHHhhhhhhhHHH-HHHHHHHHHhhhhhhhhhhhhhhHH
Q 001346 841 LSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRKQVLQ-AIIRLQKCFRGYQARSRFRELCNGV 909 (1095)
Q Consensus 841 ~~~~~~iL~~~~l~~~~yqiGkTKVFLr~g~l~~LE~~R~~~l~-aai~IQa~~Rg~~aRr~y~~lr~aa 909 (1095)
++.|+.||+.+++++++|++|+||||||.+++..||.+|...+. +++.||++||||++|++|+++|.++
T Consensus 725 k~~~~~il~~~~~~~~~~~~G~TKVF~r~~~~~~LE~~r~~~l~~~~~~iQ~~~Rg~l~R~~~~~~r~a~ 794 (795)
T 1w7j_A 725 KQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYLEKIRADKLRAACIRIQKTIRGWLMRKKYMRMRRGD 794 (795)
T ss_dssp HHHHHHHHHHHCCCGGGEEECSSEEEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhCCCccceEEcCceEEEchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999988775 6889999999999999999988764
No 4
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=100.00 E-value=5e-203 Score=1897.27 Aligned_cols=764 Identities=36% Similarity=0.596 Sum_probs=694.9
Q ss_pred CCcEEEEEcCCCCEEEEEEEEeeCCeEEEEec--CCeEEEEeCCCcccCCCCcccCcCCccccccCCchhHHHHHHHHhh
Q 001346 157 KKLRVWCRLEDGKWESGMIQSTSGDEAFVLLS--NGNVVKVSTGELLPANPDILEGVDDLIQLSYLNEPSVLNNIQYRYS 234 (1095)
Q Consensus 157 ~~~~vW~~~~~~~~~~~~v~~~~~~~~~v~~~--~g~~~~v~~~~~~~~np~~~~~~~Dl~~L~~LnE~svL~~L~~Ry~ 234 (1095)
+|.+||+||++++|.+|+|++..++.++|.+. +|++++++.+++.|+||+.++++|||+.|++|||++|||||+.||.
T Consensus 3 ~G~~VWv~d~~~~~~~a~v~~~~~~~~~v~~~~~~g~~~~~~~~~v~~~n~~~~~~veDl~~L~~LnE~svL~nL~~Ry~ 82 (1052)
T 4anj_A 3 DGKPVWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYS 82 (1052)
T ss_dssp -CCCEEEEETTTEEEEEEEEEECSSEEEEEEC----CCEEEEGGGCEECCSCSSCCCSBGGGSSSCSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCEEEEEEEEEcCCcEEEEEeCCCCcEEEecHHHcCCCCCCccCCCcccccCCCCCHHHHHHHHHHHHc
Confidence 57899999999999999999999999998764 6889999999999999999999999999999999999999999999
Q ss_pred cCccccccCCcEEEEcCCCCCC-CCChHHHHHHcccCCC--CCchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHHH
Q 001346 235 RDMIYSKAGPVLIAVNPFKAVP-IYGNKFITAYRQKVMD--SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAK 311 (1095)
Q Consensus 235 ~~~iYT~~G~iLiavNP~k~l~-~Y~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K 311 (1095)
+++||||+|+||||||||+++| ||++++++.|+++... ||||||||+.||+.|+++++||||||||||||||||++|
T Consensus 83 ~~~IYTy~G~iLIaVNPyk~lp~iY~~~~~~~Y~g~~~~~lpPHIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTestK 162 (1052)
T 4anj_A 83 KDRIYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTK 162 (1052)
T ss_dssp TTCCEEEETTEEEEECCSSCCTTTTSHHHHHHHTTCCBTTBCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHH
T ss_pred CCCcEEeECCEEEEECCCCCccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHHH
Confidence 9999999999999999999998 9999999999998765 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCcchHHHHHhhhHHHHHhcccccCCCCCCCccccEEEEEEcCCCceeeeEeeeeeccccccccccCCC
Q 001346 312 FAMQYLAALGGGSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGE 391 (1095)
Q Consensus 312 ~il~yLa~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~~~g~i~Ga~i~~yLLEksRVv~~~~gE 391 (1095)
+||+|||+++++...++++|+++||||||||||||++|||||||||||+|+||.+|+|+||+|++|||||||||.|++||
T Consensus 163 ~im~yLa~~~~~~~~ie~~Il~snpiLEAFGNAKT~rNdNSSRFGK~iel~F~~~G~i~Ga~I~~YLLEKSRVv~q~~gE 242 (1052)
T 4anj_A 163 FVLRYLTESYGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEE 242 (1052)
T ss_dssp HHHHHHHHHHCC---CTTHHHHTHHHHHHHHEECCSSCTTEESSEEEEEEEECTTSCEEEEEEEEECCCSGGGTCCCTTC
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHhccCCCCCCCCCcCCceeEEEEEECCCCCEEEEEEeccccccCceeecCCCC
Confidence 99999999998888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccchhhhhcCCChhhHHhcCCCCCCCCCcccCC--------------------------CccccCCcchHHHHHHHHH
Q 001346 392 RSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQS--------------------------ECLTIDGVDDAQNFHNLME 445 (1095)
Q Consensus 392 RnfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~--------------------------~~~~~~~~dD~~~f~~l~~ 445 (1095)
||||||||||+|+++++|++|+|.++++|+||+++ +|..++++||+++|..++.
T Consensus 243 RNfHIFYqLlaGa~~~~r~~l~L~~~~~y~yL~qg~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dD~~~f~~~~~ 322 (1052)
T 4anj_A 243 RNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCT 322 (1052)
T ss_dssp CSBHHHHHHHHHCCHHHHHHHTCCCGGGCHHHHTSCCCCBCCHHHHTTSCGGGCCHHHHHHCCBCCSSCCHHHHHHHHHH
T ss_pred CCcccHHHHhcCCCHHHHHHcCCCChHhCchhcCCCccccccccchhhhcccccchhhccCCCccCCCcchHHHHHHHHH
Confidence 99999999999999999999999999999999985 4667889999999999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHHhcCceEEEecCCC---ceeecChHHHHHHHHhcCCCHHHHHHhHhhcEEe-----e
Q 001346 446 ALDIVLIRKEDREQTFAMLAAVLWLGNISFQVIDNEN---HVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQ-----A 517 (1095)
Q Consensus 446 Al~~lG~~~~e~~~i~~iLaAILhLGni~F~~~~~~~---~~~~~~~~~l~~aa~LLgv~~~~L~~~L~~~~~~-----~ 517 (1095)
||++|||+++|+..||+|||||||||||+|...++.+ .+.+.+.+.++.||.||||++++|.++||++++. +
T Consensus 323 Am~~lGfs~~e~~~I~~iLAaILhLGNi~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~aLt~r~~~~~~~~~ 402 (1052)
T 4anj_A 323 AMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGA 402 (1052)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHTCCEEC-------CEECGGGHHHHHHHHHHTTCCHHHHHHHHHEEC--------
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhhcceeEEecCCCCCCcccccCChHHHHHHHHHhCCCHHHHHHHHhhceeeeccccc
Confidence 9999999999999999999999999999998644322 2455677899999999999999999999998874 5
Q ss_pred CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccceeEeecccCcccCCCCChhHHHhhhhhHHH
Q 001346 518 GKDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERL 597 (1095)
Q Consensus 518 ~~e~i~~~l~~~qA~~~rDalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNEkL 597 (1095)
++|.++++++++||.++||||||+||++||+|||++||.+|... ....+||||||||||+|+.|||||||||||||+|
T Consensus 403 ~~e~i~~~l~~~qA~~~rDaLAK~LY~rLF~wiV~~IN~~l~~~--~~~~~IGILDI~GFE~f~~NsFEQLCINyaNEkL 480 (1052)
T 4anj_A 403 KGTVIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFE--TSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKL 480 (1052)
T ss_dssp -----CEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCS--CCSEEEEEEECCCCCCCSSCCHHHHHHHHHHHHH
T ss_pred CceEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc--cccceEEEEecCCCcccccCcHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999864 3467999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhHhhhhhcCCceeeecccChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCccccC
Q 001346 598 QQHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGE 677 (1095)
Q Consensus 598 Q~~f~~~~F~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~~p~Gll~lLDeE~~~p~~sd~~f~~kl~~~~~~~~~f~~~ 677 (1095)
||+||+|+|+.||+||.+|||+|+.|+|.||++|||||+++|.|||++|||||.+|++||.+|++||++.+++|++|..+
T Consensus 481 Qq~Fn~~vF~~EqeeY~~EgI~w~~I~f~DN~~~idLie~kp~GIl~lLDEe~~~p~~tD~~f~~kl~~~~~~~~~~~~~ 560 (1052)
T 4anj_A 481 QQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIP 560 (1052)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHHHHHSSSCCHHHHHHHHHHTTTTCTTEECG
T ss_pred HHHHHHhhhHHHHHHHHhcCCCcccCCcCCcHHHHHHHHcCcccHHHHHHHHhcCCCCcHHHHHHHHHHHhccCccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988643
Q ss_pred C------------CCCeEEeccCccccccccchhhhccCcchHHHHHHHhhchHHH-HHHhhcccCCCCCCCCCCCCCCC
Q 001346 678 R------------GRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQV-LQLFASKMLKPSPKPAASSQPGA 744 (1095)
Q Consensus 678 ~------------~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l-~~lf~~~~~~~~~~~~~~~~~~~ 744 (1095)
+ ...|+|+||||+|+|+++|||+||+|+|++++++||++|++++ ..+|.+........ +.++
T Consensus 561 ~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNrD~l~~~~~~ll~~S~~~~i~~Lf~~~~~~~~~~-----~~~~ 635 (1052)
T 4anj_A 561 RKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESRDKFIRELFESSTNNNKDT-----KQKA 635 (1052)
T ss_dssp GGCSCSTTTTCCTTSEEEEEETTEEEEEECTTHHHHHBCCCCHHHHHHHHTCSCHHHHHTTCC-----------------
T ss_pred cccccccccccCCCCCeEEEcCCccEEEecCChhhhccccccHHHHHHHHhCCcHHHHHhhhccccccccc-----cCCC
Confidence 2 3469999999999999999999999999999999999999886 56886543211110 0111
Q ss_pred CCcCccchHHHHHHHHHHHHHHHhccCCeeeEeccCCCCCCCcccchhHHHHhhhhhchhHHHHHHhhCCCcccchhhHH
Q 001346 745 LDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFA 824 (1095)
Q Consensus 745 ~~~~~~tv~~~fk~qL~~L~~~L~~t~~hfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~ 824 (1095)
....+.||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|||+|+|||+|++|.+|+
T Consensus 636 ~~~~~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvLE~irI~r~Gyp~R~~f~eF~ 715 (1052)
T 4anj_A 636 GKLSFISVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHELY 715 (1052)
T ss_dssp ----CCBHHHHHHHHHHHHHHHHHTSEEEEEEEECCCSSCCSSCCCHHHHHHHHHHHTHHHHHHHTTTCCCEEEEHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHHHHcCcCCEEEEEECCCccCCCCcCCHHHHHHHHHHhhHHHHHHHHhcCCCCcCcHHHHH
Confidence 13346799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccccccccCCChHHHHHHHHHhcCCCCcceeeceeeeeeccchhHHhhhhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 001346 825 GRYGVLLSEKQLSQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRKQVLQAIIRLQKCFRGYQARSRFRE 904 (1095)
Q Consensus 825 ~RY~~L~~~~~~~~d~~~~~~~iL~~~~l~~~~yqiGkTKVFLr~g~l~~LE~~R~~~l~aai~IQa~~Rg~~aRr~y~~ 904 (1095)
+||++|++......|+++.|+.||+.+++++++|++|+||||||++++..||++|...+..++.+|..+|||++|++|++
T Consensus 716 ~RY~~L~~~~~~~~d~k~~~~~iL~~l~l~~~~y~iG~TKVFlr~~~~~~LE~~r~~~~~~~~~~iq~~r~~l~r~~~~k 795 (1052)
T 4anj_A 716 NMYKKYMPDKLARLDPRLFCKALFKALGLNEIDYKFGLTKVFFRPGKFAEFDQIMKSDPDHLAELVKRVNHWLICSRWKK 795 (1052)
T ss_dssp HHHHTTSCSSGGGSCHHHHHHHHHHHTSCCGGGEEECSSEEEECTTCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCcccccCCCHHHHHHHHHHHcCcCcccEEecCCEEeeCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888999999999999999999999999999999999999999998877655444446899999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 001346 905 LCNGVITLQSFARGENTRRRHAS 927 (1095)
Q Consensus 905 lr~aai~IQs~~Rg~~aRr~y~~ 927 (1095)
++++++.||..+|+++.|+.+..
T Consensus 796 ~~~~a~~i~~~~r~~~~r~~~~~ 818 (1052)
T 4anj_A 796 VQWCSLSVIKLKNKIKYRAEAVS 818 (1052)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcch
Confidence 99999999999999887776544
No 5
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=100.00 E-value=1.5e-201 Score=1946.84 Aligned_cols=771 Identities=40% Similarity=0.657 Sum_probs=711.6
Q ss_pred CcEEEEEcCCCCEEEEEEEEeeCCeEEEEe-cCCeEEEEeCCCcccCCCCcccCcCCccccccCCchhHHHHHHHHhhcC
Q 001346 158 KLRVWCRLEDGKWESGMIQSTSGDEAFVLL-SNGNVVKVSTGELLPANPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRD 236 (1095)
Q Consensus 158 ~~~vW~~~~~~~~~~~~v~~~~~~~~~v~~-~~g~~~~v~~~~~~~~np~~~~~~~Dl~~L~~LnE~svL~~L~~Ry~~~ 236 (1095)
+.+||||+++++|.+|+|++..++.++|.+ ++|++++|+.+++.|+||+.+++++||+.|++|||++|||||+.||..+
T Consensus 31 ~~~vw~~~~~~~~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~~~~~~n~~~~~~~~Dl~~l~~l~e~~vl~~L~~Ry~~~ 110 (1184)
T 1i84_S 31 KKLVWVPSEKHGFEAASIKEEKGDEVTVELQENGKKVTLSKDDIQKMNPPKFSKVEDMAELTCLNEASVLHNLRERYFSG 110 (1184)
T ss_dssp TTEEEECCTTTSSEEEEEEEEETTEEEEEETTTCCEEEEETTSCEECCCGGGTTCSBTTSSSCCCTTHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCeEEEEEEEecCCeEEEEEcCCCcEEEeeHHHccCCCCccccccchhhhhccccHHHHHHHHHHHhcCC
Confidence 679999999999999999999999999996 5899999999999999999999999999999999999999999999999
Q ss_pred ccccccCCcEEEEcCCCCCCCCChHHHHHHcccCCC--CCchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHHHHHH
Q 001346 237 MIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAM 314 (1095)
Q Consensus 237 ~iYT~~G~iLiavNP~k~l~~Y~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il 314 (1095)
.||||+|+||||||||+++|+|+++++..|+++... ||||||||+.||++|+.+++||||||||||||||||++|+||
T Consensus 111 ~iyT~~g~~li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~aia~~ay~~m~~~~~~Q~i~isGeSGaGKTe~~k~~~ 190 (1184)
T 1i84_S 111 LIYTYSGLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVI 190 (1184)
T ss_dssp CCEEEETTEEEEECCCSCCSCCSHHHHHHHSSCCSSSSCCCHHHHHHHHHHHHHHHTCCEEEECCCSTTSSTTHHHHHHH
T ss_pred CcEEecCcceeeeCCCcCCCCCCHHHHHHhcCcccccCCccHhhhHHHHHHHHHhcCCCcEEEEecCCCCCccHHHHHHH
Confidence 999999999999999999999999999999998765 899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC----------------CcchHHHHHhhhHHHHHhcccccCCCCCCCccccEEEEEEcCCCceeeeEeeeee
Q 001346 315 QYLAALGGG----------------SEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQTFL 378 (1095)
Q Consensus 315 ~yLa~~~~~----------------~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~~~g~i~Ga~i~~yL 378 (1095)
+|||+++++ .+.|+++|+++||||||||||||+||||||||||||+|+||.+|.|+||+|.+||
T Consensus 191 ~yla~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~npileaFGnAkT~rN~NSSRfgk~~~i~f~~~g~i~ga~i~~yl 270 (1184)
T 1i84_S 191 QYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYL 270 (1184)
T ss_dssp HHHHHHSSCCSCC------CTTCCCCCSHHHHHHHHHHHHTTTTEEEETTEEEEECSCEEEEEEECSSSCEEEEEEEECC
T ss_pred HHHHHHhcCCCcccccccccccccccchHHHHHHHHHHHHHHhcCCcCCCCccccccceeEEEEECCCCCEeeeEEeEee
Confidence 999999875 2478999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCcccchhhhhcCCChhhHHhcCCCCCCCCCcccCCCccccCCcchHHHHHHHHHHHhhcCCCHHHHH
Q 001346 379 LEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLMEALDIVLIRKEDRE 458 (1095)
Q Consensus 379 LEksRVv~~~~gERnfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~l~~Al~~lG~~~~e~~ 458 (1095)
|||||||.|++||||||||||||+|+++++++.|+|.++.+|+||+++ |..++++||+++|..++.||++|||+++++.
T Consensus 271 LEksRv~~q~~~ErnfhiFYqll~g~~~~~~~~l~l~~~~~~~yl~~~-~~~~~~~~d~~~f~~~~~a~~~lg~~~~e~~ 349 (1184)
T 1i84_S 271 LEKSRAIRQAKDERTFHIFYYLIAGASEQMRNDLLLEGFNNYTFLSNG-HVPIPAQQDDEMFQETLEAMTIMGFTEEEQT 349 (1184)
T ss_dssp CCCGGGSCCCTTCCCCTHHHHHHHHCCHHHHHHTTCCCTTSCSSCTTS-SCCCTTCCHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred cCCceeeeecCCCCchhhHHHHHcCCCHHHHHHcCCCChHhCCccCCC-CcCCCCCChHHHHHHHHHHHHhceeCHHHHH
Confidence 999999999999999999999999999999999999999999999997 4588999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCceEEEecCCCceeecChHHHHHHHHhcCCCHHHHHHhHhhcEEeeCCceEEecCCHHHHHHHHHHH
Q 001346 459 QTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKDSIAKKLTLQQAIDSRDAL 538 (1095)
Q Consensus 459 ~i~~iLaAILhLGni~F~~~~~~~~~~~~~~~~l~~aa~LLgv~~~~L~~~L~~~~~~~~~e~i~~~l~~~qA~~~rDal 538 (1095)
.||+|||||||||||+|...++++.+.+.+.+.++.||.||||++++|.++||++++.+|++.+++++|++||.++||||
T Consensus 350 ~i~~ilaaiLhlGni~f~~~~~~~~~~~~~~~~~~~~a~lLg~~~~~l~~~l~~~~~~~~~e~~~~~~~~~~a~~~rdal 429 (1184)
T 1i84_S 350 SILRVVSSVLQLGNIVFKKERNTDQASMPDNTAAQKVCHLMGINVTDFTRSILTPRIKVGRDVVQKAQTKEQADFAIEAL 429 (1184)
T ss_dssp HHHHHHHHHHHTTTCCCBCCTTTSCCBCCCSHHHHHHHHHTTSCHHHHHHHHHSCCCCCTTSCCCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCceeeccCCCcCcccCChHHHHHHHHHHCCCHHHHHHHhcCcEEEeCCceEecCCCHHHHHHHHHHH
Confidence 99999999999999999976666678888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccccCCCCccceeEeecccCcccCCCCChhHHHhhhhhHHHHHHHHHhhhhhhHhhhhhcCC
Q 001346 539 AKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGV 618 (1095)
Q Consensus 539 ak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~eY~~EgI 618 (1095)
||+||++||+|||.+||.+|.+.......+||||||||||+|+.|||||||||||||+||||||+|+|+.||++|.+|||
T Consensus 430 ak~lY~~lF~wlv~~iN~~l~~~~~~~~~~IgvLDi~GFE~f~~NsfeQlciNy~nEkLq~~f~~~~f~~eq~ey~~Egi 509 (1184)
T 1i84_S 430 AKAKFERLFRWILTRVNKALDKTKRQGASFLGILDIAGFEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGI 509 (1184)
T ss_dssp HHHHHHHHHHHHHHHHTTTCC------CEEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCccCCcceEEEeecCCcCCCCcchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCC
Confidence 99999999999999999999875344568999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeccc-ChHHHHHHHhcC--CCccccccccccCCCCCChHHHHHHHHHHhCCCCccccCC----CCCeEEeccCccc
Q 001346 619 DWTRVEFE-DNEECLNLIEKK--PLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGER----GRAFSIRHYAGEV 691 (1095)
Q Consensus 619 ~~~~i~f~-dN~~~ldLie~~--p~Gll~lLDeE~~~p~~sd~~f~~kl~~~~~~~~~f~~~~----~~~F~I~HyaG~V 691 (1095)
+|+.|+|. ||++|||||+++ |.|||+||||||.+|++||.+|++||+++|++||+|..++ ..+|+|+||||+|
T Consensus 510 ~~~~i~~~~dn~~~~~lie~~~~~~Gil~lLdee~~~p~~td~~~~~kl~~~~~~~~~~~~~~~~~~~~~F~i~Hyag~V 589 (1184)
T 1i84_S 510 EWNFIDFGLDLQPCIELIERPTNPPGVLALLDEECWFPKATDTSFVEKLIQEQGNHAKFQKSKQLKDKTEFCILHYAGKV 589 (1184)
T ss_dssp SCCCCCCCCCCHHHHHTTSCCSSSCCHHHHHHHTTSCTTCCHHHHHHHHHHHTSSCTTEEECSSCTTTCEEEEECSSCEE
T ss_pred CccccccCCCcHHHHHHHhCCCCCCCchhhhhhhhCCCCCChHHHHHHHHHHhCCCCCccCCCCCCCCCcEEEECCCceE
Confidence 99999995 999999999973 3499999999999999999999999999999999998764 4789999999999
Q ss_pred cccccchhhhccCcchHHHHHHHhhchHHH-HHHhhcccCCCCC-CCC------CCCCCCCCCcCccchHHHHHHHHHHH
Q 001346 692 PYDTNGFLEKNRDPLQTDIIQLLSSCTCQV-LQLFASKMLKPSP-KPA------ASSQPGALDTQKQSVGTKFKGQLFKL 763 (1095)
Q Consensus 692 ~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l-~~lf~~~~~~~~~-~~~------~~~~~~~~~~~~~tv~~~fk~qL~~L 763 (1095)
+|+++|||+||+|+|+++++.||++|++++ ..+|.......+. ++. .|..+.+..+..+||+++|+.||+.|
T Consensus 590 ~Y~~~gfl~kN~d~l~~~~~~ll~~s~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~l~~L 669 (1184)
T 1i84_S 590 TYNASAWLTKNMDPLNDNVTSLLNQSSDKFVADLWKDVDRIVGLDQMAKMTESSLPSASKTKKGMFRTVGQLYKEQLTKL 669 (1184)
T ss_dssp EEECTTHHHHHHCCCCHHHHHHHHTCSCHHHHHHHSCCTTCCCC---------------------CCCHHHHHHHHHHHH
T ss_pred EeccCCchhhccCcccHHHHHHHHhCchHHHHHHhccccccccccccccccccccCccccccCCCCCcHHHHHHHHHHHH
Confidence 999999999999999999999999999886 5688754321110 000 00000111234589999999999999
Q ss_pred HHHHhccCCeeeEeccCCCCCCCcccchhHHHHhhhhhchhHHHHHHhhCCCcccchhhHHHhhhccccccccC--CChH
Q 001346 764 MHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQLS--QDPL 841 (1095)
Q Consensus 764 ~~~L~~t~~hfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~--~d~~ 841 (1095)
|++|++|+||||||||||+.+.|+.||..+|++||||+||||+|||+|.|||+|++|.+|+.||++|.|...+. .|++
T Consensus 670 ~~~l~~t~phfvRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~R~~~~~F~~ry~~L~~~~~~~~~~d~k 749 (1184)
T 1i84_S 670 MTTLRNTNPNFVRCIIPNHEKRAGKLDAHLVLEQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILAANAIPKGFMDGK 749 (1184)
T ss_dssp HHHHTTSEEEECCEECCCSSCCSSCCCHHHHHHHHHHTTHHHHHHHHHHSCCEEEEHHHHHHHTTTTCTTTSCSSCCCHH
T ss_pred HHHHHhcCCCceeeeCCCCcCCCCcccHHHHHHHHhhcCchHHHHhHhhcCcccccHHHHHHHHHHhccccCCcCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998876553 4889
Q ss_pred HHHHHHHHhcCCCCcceeeceeeeeeccchhHHhhhhhhhHHH-HHHHHHHHHhhhhhhhhhhhhh---hHHHHHHHHHH
Q 001346 842 SISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRKQVLQ-AIIRLQKCFRGYQARSRFRELC---NGVITLQSFAR 917 (1095)
Q Consensus 842 ~~~~~iL~~~~l~~~~yqiGkTKVFLr~g~l~~LE~~R~~~l~-aai~IQa~~Rg~~aRr~y~~lr---~aai~IQs~~R 917 (1095)
..|..||..++++++.|++|+||||||.|++..||..|...+. .++.||++||||++|++|.+++ .++++||+.||
T Consensus 750 ~~~~~lL~~l~l~~~~~~iG~TKVF~r~g~l~~LE~~r~~~l~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r 829 (1184)
T 1i84_S 750 QACILMIKALELDPNLYRIGQSKIFFRTGVLAHLEEERDLKITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVR 829 (1184)
T ss_dssp HHHHHHHHTTTCCTTTCCBCSSEEEECTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCccceeEcCeEEEEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988775 5789999999999999999874 68899999999
Q ss_pred HHHHHHHHHHHh
Q 001346 918 GENTRRRHASLG 929 (1095)
Q Consensus 918 g~~aRr~y~~lr 929 (1095)
+|.+|+.|..++
T Consensus 830 ~~~~~k~~~~~r 841 (1184)
T 1i84_S 830 SFMNVXHWPWMX 841 (1184)
T ss_dssp HHHHHTTCHHHH
T ss_pred HHHHHhhhHHHH
Confidence 999998765443
No 6
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=100.00 E-value=5.9e-200 Score=1824.39 Aligned_cols=727 Identities=39% Similarity=0.663 Sum_probs=646.0
Q ss_pred cccccccCCcEEEEEcCCCCEEEEEEEEeeCCeEEEEecCCeEEEEeCCCcccCCCCcccCcCCccccccCCchhHHHHH
Q 001346 150 NLGYFIKKKLRVWCRLEDGKWESGMIQSTSGDEAFVLLSNGNVVKVSTGELLPANPDILEGVDDLIQLSYLNEPSVLNNI 229 (1095)
Q Consensus 150 ~~~~~~~~~~~vW~~~~~~~~~~~~v~~~~~~~~~v~~~~g~~~~v~~~~~~~~np~~~~~~~Dl~~L~~LnE~svL~~L 229 (1095)
+.+|.. |.+||+|+++++|..|+|++.+++.++|++++|++++|+.+++.|+||+.++++|||+.|++|||++|||||
T Consensus 28 ~~~~~~--~~~vWv~d~~~~~~~~~v~~~~~~~~~v~~~~g~~~~v~~~~v~~~np~~~~~~eDl~~L~~LnE~svL~nL 105 (783)
T 4db1_A 28 TRPFDL--KKDVFVPDDKQEFVKAKIVSREGGKVTAETEYGKTVTVKEDQVMQQNPPKFDKIEDMAMLTFLHEPAVLYNL 105 (783)
T ss_dssp HSCCCT--TTEEEEECSSSSEEEEEEEEECSSEEEEEETTTEEEEEEGGGCEECCCGGGTTCSBGGGCSCCSHHHHHHHH
T ss_pred ccCCcC--CCEEEEECCCCCEEEEEEEEecCCEEEEEECCCCEEeCCHHHcccCCCCccCCcchhhccccccHHHHHHHH
Confidence 445554 679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCccccccCCcEEEEcCCCCCCCCChHHHHHHcccCCC--CCchhHHHHHHHHHHhhCCCceEEEEcCCCCCChh
Q 001346 230 QYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKT 307 (1095)
Q Consensus 230 ~~Ry~~~~iYT~~G~iLiavNP~k~l~~Y~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKT 307 (1095)
+.||.+++||||+|+||||||||+++|||+++++..|+++... ||||||||+.||++|+++++|||||||||||||||
T Consensus 106 ~~Ry~~~~IYTy~G~iLvavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKT 185 (783)
T 4db1_A 106 KDRYGSWMIYTYSGLFCVTVNPYKWLPVYTPEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRENQSILITGESGAGKT 185 (783)
T ss_dssp HHHHHTTCCEEEETTEEEEECCSSCCSCSSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHH
T ss_pred HHHhcCCceEEecCceeEecCCCccCCCCCHHHHHHhcCCCcCCCCchhhHHHHHHHHHHHhhCCCceEEEeCCCCCCCc
Confidence 9999999999999999999999999999999999999987654 89999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCC-----------cchHHHHHhhhHHHHHhcccccCCCCCCCccccEEEEEEcCCCceeeeEeee
Q 001346 308 ETAKFAMQYLAALGGGS-----------EGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQT 376 (1095)
Q Consensus 308 e~~K~il~yLa~~~~~~-----------~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~~~g~i~Ga~i~~ 376 (1095)
|++|+||+|||+++++. ..|+++|+++||||||||||||+||||||||||||+|+||.+|+|+||+|++
T Consensus 186 e~tK~im~yla~v~~~~~~~~~~~~~~~~~ve~~il~snpiLEAFGNAkT~rNdNSSRFGK~i~i~F~~~g~i~Ga~I~~ 265 (783)
T 4db1_A 186 VNTKRVIQYFAVIAAIGDRSKKDQSPGKGTLEDQIIQANPALEAFGNAKTVRNDNSSRFGKFIRIHFGATGKLASADIET 265 (783)
T ss_dssp HHHHHHHHHHHHHSBCCCC-------CCSCHHHHHHHHHHHHHHHHEECCSSCTTEECSEEEEEEEECTTSBEEEEEEEE
T ss_pred hHHHHHHHhhhhhccCCCccccccccccccHHHHHHHhHHHHHhccCcccCCCCCCCccceeEEEEECCCCCEeeeEEEE
Confidence 99999999999987532 4699999999999999999999999999999999999999999999999999
Q ss_pred eeccccccccccCCCCcccchhhhhcCCChhhHHhcCCC-CCCCCCcccCCCccccCCcchHHHHHHHHHHHhhcCCCHH
Q 001346 377 FLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLK-VANDYNYLNQSECLTIDGVDDAQNFHNLMEALDIVLIRKE 455 (1095)
Q Consensus 377 yLLEksRVv~~~~gERnfHIFYqLl~G~~~~~~~~l~L~-~~~~y~yL~~~~~~~~~~~dD~~~f~~l~~Al~~lG~~~~ 455 (1095)
|||||||||.|++||||||||||||+|+++++|+.|+|. ++.+|+||+++ +..++++||+++|..++.||++|||+++
T Consensus 266 YLLEKSRVv~q~~gERnfHIFYqLlaG~~~~~~~~l~L~~~~~~y~yl~~g-~~~~~~~dD~~~f~~~~~Am~~lGfs~~ 344 (783)
T 4db1_A 266 YLLEKSRVIFQLKAERDYHIFYQILSNKKPELLDMLLITNNPYDYAFISQG-ETTVASIDDAEELMATDNAFDVLGFTSE 344 (783)
T ss_dssp ECCCGGGGTCCCTTCCSBHHHHHHHTCSSHHHHHHTTCCSCGGGCGGGCSS-CCCCTTCCHHHHHHHHHHHHHHTTCCHH
T ss_pred eecccceeeccCCCCCcchhHHHHHcCCCHHHHHHhccCCCHHHCccccCC-CcccCCCCcHHHHHHHHHHHHHcCCCHH
Confidence 999999999999999999999999999999999999994 79999999997 5678999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCceEEEecCCCceeecChHHHHHHHHhcCCCHHHHHHhHhhcEEeeCCceEEecCCHHHHHHHH
Q 001346 456 DREQTFAMLAAVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKDSIAKKLTLQQAIDSR 535 (1095)
Q Consensus 456 e~~~i~~iLaAILhLGni~F~~~~~~~~~~~~~~~~l~~aa~LLgv~~~~L~~~L~~~~~~~~~e~i~~~l~~~qA~~~r 535 (1095)
++..||+|||||||||||+|...++++.+.+.+.+.++.||.||||++++|.++|++|++.+++|.++++++++||.++|
T Consensus 345 e~~~i~~ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~aL~~~~i~~~~e~v~~~~~~~qA~~~r 424 (783)
T 4db1_A 345 EKNSMYKLTGAIMHFGNMKFKLKQREEQAEPDGTEEADKSAYLMGLNSADLLKGLCHPRVKVGNEYVTKGQNVQQVIYAT 424 (783)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEECTTSSCEEESCCHHHHHHHHHTTCCHHHHHHHHHSCC------CCCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccceeeccCCCcccccCChHHHHHHHHHhCCCHHHHHHhhcceEEEeCCeeEeeCCCHHHHHHHH
Confidence 99999999999999999999987767778889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccCCCCccceeEeecccCcccCCCCChhHHHhhhhhHHHHHHHHHhhhhhhHhhhhh
Q 001346 536 DALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEEYEL 615 (1095)
Q Consensus 536 Dalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~eY~~ 615 (1095)
|||||+||++||+|||.+||.+|.+. .....+||||||||||+|+.|||||||||||||||||+||+|+|+.||+||.+
T Consensus 425 dalAK~lY~rLF~wlV~~IN~~l~~~-~~~~~~IGvLDI~GFE~f~~NsFEQlCINyaNEkLQq~Fn~~~F~~EqeeY~~ 503 (783)
T 4db1_A 425 GALAKAVYERMFNWMVTRINATLETK-QPRQYFIGVLDIAGFEIFDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKK 503 (783)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCS-CCCSEEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCceEEEeccccccccccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Confidence 99999999999999999999999864 34467999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeeccc-ChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHh-CCCCccccCC------CCCeEEecc
Q 001346 616 DGVDWTRVEFE-DNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHL-GSNSCFKGER------GRAFSIRHY 687 (1095)
Q Consensus 616 EgI~~~~i~f~-dN~~~ldLie~~p~Gll~lLDeE~~~p~~sd~~f~~kl~~~~-~~~~~f~~~~------~~~F~I~Hy 687 (1095)
|||+|+.|+|. ||++|||||++ |.|||+||||||.+|++||.+|++||++.+ ++|++|..++ ..+|+|+||
T Consensus 504 EgI~w~~i~f~~Dn~~~idLiek-p~Gil~lLDEec~~p~~tD~tf~~kl~~~~~~~~~~f~~~~~~k~~~~~~F~I~Hy 582 (783)
T 4db1_A 504 EGIEWTFIDFGMDLQACIDLIEK-PMGIMSILEEECMFPKATDMTFKAKLFDNHLGKSANFQKPRNIKGKPEAHFSLIHY 582 (783)
T ss_dssp HTCCCCCCCGGGGGHHHHHHHHS-TTSHHHHHCC-TTCTTCCHHHHHHHHHHHHTTTCTTEECCCC----C-CCEEEEET
T ss_pred cCCCcccccccCChHHHHHHHhC-CCchHhhhhHHhcCCCCCHHHHHHHHHHHhcCCCCCccCCCCCCCCCCCCeEEeCc
Confidence 99999999995 99999999997 899999999999999999999999998765 8999997654 368999999
Q ss_pred CccccccccchhhhccCcchHHHHHHHhhchHHH-HHHhhcccCCCCCCCCCCCCC-CCCCcCccchHHHHHHHHHHHHH
Q 001346 688 AGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQV-LQLFASKMLKPSPKPAASSQP-GALDTQKQSVGTKFKGQLFKLMH 765 (1095)
Q Consensus 688 aG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l-~~lf~~~~~~~~~~~~~~~~~-~~~~~~~~tv~~~fk~qL~~L~~ 765 (1095)
||+|+|+++|||+||+|+|+++++++|++|++++ ..+|.......+ +..+.+. ....+..+||+++||.||+.||+
T Consensus 583 AG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~~~~v~~lf~~~~~~~~--~~~~~~~~~~~~~~~~Tv~~~fk~sL~~Lm~ 660 (783)
T 4db1_A 583 AGIVDYNIIGWLQKNKDPLNETVVGLYQKSSLKLLSTLFANYAGADA--PIEKGKGKAKKGSSFQTVSALHRENLNKLMT 660 (783)
T ss_dssp TEEEEECCTTHHHHHHCCCCHHHHHHHHTCSSHHHHHHHHSCC--------------------CCCHHHHHHHHHHHHHH
T ss_pred CCceEEeCcChhhhccccccHHHHHHHHHCccHHHHHHhhccccccc--cccCccCCCCcCCCCccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999885 578976432211 0000000 01123458999999999999999
Q ss_pred HHhccCCeeeEeccCCCCCCCcccchhHHHHhhhhhchhHHHHHHhhCCCcccchhhHHHhhhccccccccC---CChHH
Q 001346 766 QLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQLS---QDPLS 842 (1095)
Q Consensus 766 ~L~~t~~hfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~---~d~~~ 842 (1095)
+|++|+||||||||||+.|.|+.||..+|++||||+||||+|||+|+|||+|++|.+|++||++|.+...+. .|+++
T Consensus 661 ~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~f~eF~~RY~~L~~~~~~~~~~~d~k~ 740 (783)
T 4db1_A 661 NLRSTHPHFVRCIIPNETKSPGVMDNPLVMHQLRCNGVLEGIRICRKGFPNRILYGDFRQRYRILNPAAIPEGQFIDSRK 740 (783)
T ss_dssp HHHTSEEEEEEEECCCSSCCTTCCCHHHHHHHHHHSSHHHHHHHHHTSCCEEEEC-------------------------
T ss_pred HHHccCCEEEEeeCCCcccCCCcccchhhheeccccChHhheeehhcCCCccCcHHHHHHHHHHhCccccCCCCCCCHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999886643 47889
Q ss_pred HHHHHHHhcCCCCcceeeceeeeeeccchhHHhhhhhhhHH
Q 001346 843 ISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRKQVL 883 (1095)
Q Consensus 843 ~~~~iL~~~~l~~~~yqiGkTKVFLr~g~l~~LE~~R~~~l 883 (1095)
.|+.||+.++++++.|++|+||||||.++++.||.+|.+.+
T Consensus 741 ~~~~ll~~~~~~~~~~~~G~TKVFlr~g~~~~LE~~R~~~l 781 (783)
T 4db1_A 741 GAEKLLSSLDIDHNQYKFGHTKVFFKAGLLGLLEEMRDERL 781 (783)
T ss_dssp -CCHHHHSSSSCGGGEEECSSEEEECTTHHHHHHHHC----
T ss_pred HHHHHHHhCCCCcCeEEECCEEEEECcCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998765
No 7
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=100.00 E-value=1e-198 Score=1869.82 Aligned_cols=769 Identities=38% Similarity=0.628 Sum_probs=712.7
Q ss_pred CcEEEEEcCCCCEEEEEEEEeeCCeEEEEec-CCeEEEEeCCCcccCCCCcccCcCCccccccCCchhHHHHHHHHhhcC
Q 001346 158 KLRVWCRLEDGKWESGMIQSTSGDEAFVLLS-NGNVVKVSTGELLPANPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRD 236 (1095)
Q Consensus 158 ~~~vW~~~~~~~~~~~~v~~~~~~~~~v~~~-~g~~~~v~~~~~~~~np~~~~~~~Dl~~L~~LnE~svL~~L~~Ry~~~ 236 (1095)
+.+||+|+++++|.+|+|++.+++.++|.+. +|++++|+.+++.|+||+.++++|||+.|++|||++|||||+.||.++
T Consensus 8 ~~~vwv~~~~~~~~~~~v~~~~~~~~~v~~~~~~~~~~v~~~~~~~~np~~~~~~~Dl~~L~~l~e~~vl~nL~~Ry~~~ 87 (995)
T 2ycu_A 8 RRLVWVPSELHGFEAAALRDEGEEEAEVELAESGRRLRLPRDQIQRMNPPKFSKAEDMAELTCLNEASVLHNLRERYYSG 87 (995)
T ss_dssp GCEEEEEETTTEEEEEEEEEECSSEEEEEETTTCCEEEEEGGGCEECCCGGGTTCSBGGGCSSCSHHHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCceEEEEEEEecCCeEEEEECCCCeEEEeeHHHcccCCCccccccchhhhhccccHHHHHHHHHHHHhcC
Confidence 5799999999999999999999999999986 556999999999999999999999999999999999999999999999
Q ss_pred ccccccCCcEEEEcCCCCCCCCChHHHHHHcccCCC--CCchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHHHHHH
Q 001346 237 MIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAM 314 (1095)
Q Consensus 237 ~iYT~~G~iLiavNP~k~l~~Y~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il 314 (1095)
+||||+|+||||||||+++|+|+++++..|+++... ||||||||+.||++|+++++||||||||||||||||++|+||
T Consensus 88 ~iYTy~G~ilvavNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i~ 167 (995)
T 2ycu_A 88 LIYTYSGLFCVVINPYKQLPIYTEAIVEMYRGKKRHEVPPHVYAVTEGAYRSMLQDREDQSILCTGESGAGKTENTKKVI 167 (995)
T ss_dssp CCEEEETTEEEEECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECBTTSSHHHHHHHHH
T ss_pred ceeeecCceeeeeCCccccCCCCHHHHHHhcCCccCCCCchHHHHhHHHHHHHHhcCCCcEEEecCCCCCCchhhHHHHH
Confidence 999999999999999999999999999999998654 899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCC---------cchHHHHHhhhHHHHHhcccccCCCCCCCccccEEEEEEcCCCceeeeEeeeeeccccccc
Q 001346 315 QYLAALGGGS---------EGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLEKSRVV 385 (1095)
Q Consensus 315 ~yLa~~~~~~---------~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~~~g~i~Ga~i~~yLLEksRVv 385 (1095)
+|||+++++. +.|+++|+++||||||||||||+||||||||||||+|+||.+|.|+||+|.+|||||||||
T Consensus 168 ~yla~~~~~~~~~~~~~~~~~ie~~il~~npiLEAFGNAkT~rN~NSSRFGK~i~i~F~~~g~i~Ga~i~~yLLEksRvv 247 (995)
T 2ycu_A 168 QYLAHVASSPKGRKEPGVPGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIVGANIETYLLEKSRAI 247 (995)
T ss_dssp HHHHHHSCCSSSCSSSCCCC-CCSTTTSHHHHHHHHHEECCSSCTTEESSEEEEEEEECTTSCEEEEEEEEECCCGGGGT
T ss_pred HHHHHhcccCCccccccccccHHHHHHHHHHHHHHhcCccCCCCCCCCccceEEEEEECCCCCEeeeEEEEEeccCCeee
Confidence 9999998753 4689999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcccchhhhhcCCChhhHHhcCCCCCCCCCcccCCCccccCCcchHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 001346 386 QLAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLMEALDIVLIRKEDREQTFAMLA 465 (1095)
Q Consensus 386 ~~~~gERnfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~l~~Al~~lG~~~~e~~~i~~iLa 465 (1095)
.|++||||||||||||+|+++++++.|+|.++.+|+||++++ ..+++ ||+++|..++.||++|||+++++..||+|||
T Consensus 248 ~q~~~ERnfHIFYqll~g~~~~~~~~l~L~~~~~y~yl~~~~-~~~~~-dD~~~f~~~~~A~~~lg~~~~e~~~i~~ila 325 (995)
T 2ycu_A 248 RQAKDECSFHIFYQLLGGAGEQLKADLLLEPCSHYRFLTNGP-SSSPG-QERELFQETLESLRVLGFSHEEIISMLRMVS 325 (995)
T ss_dssp CCCTTCCCBHHHHHHHHHCCHHHHHHTTCCCGGGCTTSTTCS-CSSTT-THHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred ccCCCCCcchhHHHHHcCCCHHHHHHcCCCChHHcccccCCc-cccCC-cHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999986 57788 9999999999999999999999999999999
Q ss_pred HHHHhcCceEEEecCCCceeecChHHHHHHHHhcCCCHHHHHHhHhhcEEeeCCceEEecCCHHHHHHHHHHHHHHHHHH
Q 001346 466 AVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKDSIAKKLTLQQAIDSRDALAKFIYGS 545 (1095)
Q Consensus 466 AILhLGni~F~~~~~~~~~~~~~~~~l~~aa~LLgv~~~~L~~~L~~~~~~~~~e~i~~~l~~~qA~~~rDalak~LY~~ 545 (1095)
||||||||+|...++++.+.+.+.+.++.||.||||++++|.++|+++++.+++|.+++++|++||.++||||||+||++
T Consensus 326 aILhlGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~v~~~~~~~qa~~~rdalak~lY~~ 405 (995)
T 2ycu_A 326 AVLQFGNIALKRERNTDQATMPDNTAAQKLCRLLGLGVTDFSRALLTPRIKVGRDYVQKAQTKEQADFALEALAKATYER 405 (995)
T ss_dssp HHHHGGGCCCEECSSSCCEECSCCHHHHHHHHHTTCCHHHHHHHHHSCEEESSSSEEECCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhccceEeecCCCcccccCChHHHHHHHHHHCCCHHHHHHHhcCcEEEcCCceecCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999876667788889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccccCCCCccceeEeecccCcccCCCCChhHHHhhhhhHHHHHHHHHhhhhhhHhhhhhcCCceeeecc
Q 001346 546 LFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVEF 625 (1095)
Q Consensus 546 LF~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~eY~~EgI~~~~i~f 625 (1095)
||+|||.+||.+|.........+||||||||||+|+.|||||||||||||+|||+||+|+|+.||+||.+|||+|+.|+|
T Consensus 406 LF~wlV~~iN~~l~~~~~~~~~~IgvLDI~GFE~f~~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f 485 (995)
T 2ycu_A 406 LFRWLVLRLNRALDRSPRQGASFLGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDF 485 (995)
T ss_dssp HHHHHHHHHHHHHCCCSCCCSEEEEEEECCCBCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCC
T ss_pred HHHHHHHHHHHHhcCCCCCccceEEEeccccccccccchHHHHHHHhhHHHHHHHHHHhhhHHHHHHHhccCCCcccccc
Confidence 99999999999998654325689999999999999999999999999999999999999999999999999999999999
Q ss_pred -cChHHHHHHHhc--CCCccccccccccCCCCCChHHHHHHHHHHhCCCCccccCC----CCCeEEeccCccccccccch
Q 001346 626 -EDNEECLNLIEK--KPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGER----GRAFSIRHYAGEVPYDTNGF 698 (1095)
Q Consensus 626 -~dN~~~ldLie~--~p~Gll~lLDeE~~~p~~sd~~f~~kl~~~~~~~~~f~~~~----~~~F~I~HyaG~V~Y~~~gf 698 (1095)
.||++|||||++ +|.|||+||||||.+|++||.+|++||++.+++|++|..++ ..+|+|+||||+|+|+++||
T Consensus 486 ~~dn~~~idlie~~~~p~Gil~lLdee~~~p~~tD~~f~~kl~~~~~~~~~f~~~~~~~~~~~F~i~HyAG~V~Y~~~gf 565 (995)
T 2ycu_A 486 GLDLQPCIDLIERPANPPGLLALLDEECWFPKATDKSFVEKVAQEQGGHPKFQRPRHLRDQADFSVLHYAGKVDYKANEW 565 (995)
T ss_dssp SCCCHHHHHHHHCCSSSCCHHHHHHHSSSSTTCCHHHHHHHHHHHHTTSTTEECCCTTTCCSSEEEEETTEEEEECCTTH
T ss_pred ccChHHHHHHHhccCCCCchhhhhHHHhcCCCCchHHHHHHHHHhcCCCCCcccCCccCCCCeeEEECCCCCccccccch
Confidence 699999999998 48999999999999999999999999999889999998764 47999999999999999999
Q ss_pred hhhccCcchHHHHHHHhhchHHH-HHHhhcccCCCCCCCCCC--CCC-C--CCCcCccchHHHHHHHHHHHHHHHhccCC
Q 001346 699 LEKNRDPLQTDIIQLLSSCTCQV-LQLFASKMLKPSPKPAAS--SQP-G--ALDTQKQSVGTKFKGQLFKLMHQLENTRP 772 (1095)
Q Consensus 699 leKN~D~l~~d~~~ll~~S~~~l-~~lf~~~~~~~~~~~~~~--~~~-~--~~~~~~~tv~~~fk~qL~~L~~~L~~t~~ 772 (1095)
|+||+|+|+++++.+|++|++++ ..+|.......+..+..| ..+ | +...+.+||+++||.||+.||++|++|+|
T Consensus 566 leKN~D~l~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~tv~~~fk~sL~~Lm~~L~~t~p 645 (995)
T 2ycu_A 566 LMKNMDPLNDNVAALLHQSTDRLTAEIWKDVEGIVGLEQVSSLGDGPPGGRPRRGMFRTVGQLYKESLSRLMATLSNTNP 645 (995)
T ss_dssp HHHHHCCCCHHHHHHHHTCSSHHHHHHTSSCCSSCSCCC-------------CCCSSCCHHHHHHHHHHHHHHHHHTSEE
T ss_pred hhhccccccHHHHHHHHhCcHHHHHHHhhcccccccccccccccccccccCcCCCCCCchHHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999886 568875431111000000 000 1 11234689999999999999999999999
Q ss_pred eeeEeccCCCCCCCcccchhHHHHhhhhhchhHHHHHHhhCCCcccchhhHHHhhhccccccccC--CChHHHHHHHHHh
Q 001346 773 HFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQLS--QDPLSISVAVLQQ 850 (1095)
Q Consensus 773 hfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~--~d~~~~~~~iL~~ 850 (1095)
|||||||||+.+.|+.||..+|++||||+||||+|||+|.|||+|++|.+|+.||++|.+...+. .|+++.|+.||..
T Consensus 646 hfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~r~~~~~F~~RY~~L~~~~~~~~~~d~~~~~~~ll~~ 725 (995)
T 2ycu_A 646 SFVRCIVPNHEKRAGKLEPRLVLDQLRCNGVLEGIRICRQGFPNRILFQEFRQRYEILTPNAIPKGFMDGKQACEKMIQA 725 (995)
T ss_dssp EEEEEECCCSSCCTTCCCTTTHHHHHHHHTHHHHHHHHHHSCCEEEEHHHHHHHHGGGSTTTSCSCCCCSCCSCCCSCCC
T ss_pred ceeeeecCCccccccccCHHHHHHHhcccchHHHHHHHHhcCCccccHHHHHHHHHHhCcccccccCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999876553 4788899999999
Q ss_pred cCCCCcceeeceeeeeeccchhHHhhhhhhhHHH------HHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 001346 851 FNVLPEMYQVGYTKLYLRSGQLAALEDRRKQVLQ------AIIRLQKCFRGYQARSRFRELCNGVITLQSFARGENTRRR 924 (1095)
Q Consensus 851 ~~l~~~~yqiGkTKVFLr~g~l~~LE~~R~~~l~------aai~IQa~~Rg~~aRr~y~~lr~aai~IQs~~Rg~~aRr~ 924 (1095)
++++++.|++|+||||||.+++..||.+|...+. -+..+++|+|+..++..++..+.+++.+|++||++.+++.
T Consensus 726 ~~~~~~~~~~G~tkVF~r~~~~~~LE~~R~~~l~~~eYe~~a~~Ll~WIr~k~a~l~~r~~~~sl~~IQ~~ir~f~~fr~ 805 (995)
T 2ycu_A 726 LELDPNLYRVGQSKIFFRAGVLAQLEEERASEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKK 805 (995)
T ss_dssp SSEEESSEEEESSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCCSCHHHHHHHHHHHHHHHHHTTHHH
T ss_pred cCCChhheeecceEEEEecchhhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988774 2446788999999999999999999999999999988887
Q ss_pred HHHH
Q 001346 925 HASL 928 (1095)
Q Consensus 925 y~~l 928 (1095)
....
T Consensus 806 ~ekp 809 (995)
T 2ycu_A 806 TEKP 809 (995)
T ss_dssp HTHH
T ss_pred Hhcc
Confidence 7543
No 8
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=100.00 E-value=7.4e-196 Score=1840.76 Aligned_cols=721 Identities=44% Similarity=0.729 Sum_probs=682.9
Q ss_pred CcEEE---EEcCCCCEEEEEEEEeeCCeEEEEecCCeEEEEeCCCcccCCCCcccCcCCccccccCCchhHHHHHHHHhh
Q 001346 158 KLRVW---CRLEDGKWESGMIQSTSGDEAFVLLSNGNVVKVSTGELLPANPDILEGVDDLIQLSYLNEPSVLNNIQYRYS 234 (1095)
Q Consensus 158 ~~~vW---~~~~~~~~~~~~v~~~~~~~~~v~~~~g~~~~v~~~~~~~~np~~~~~~~Dl~~L~~LnE~svL~~L~~Ry~ 234 (1095)
+.+|| +|+++++|.+|+|++.+++.++|.+++|++++|+.+++.|+||+.+++++||+.|++|||++|||||+.||.
T Consensus 32 ~~~vW~~~v~~~~~~~~~~~v~~~~~~~~~v~~~~g~~~~v~~~~~~~~np~~~~~~~Dl~~L~~l~e~~vl~nL~~Ry~ 111 (1010)
T 1g8x_A 32 KRYIWYNPDPDERDSYECGEIVSETSDSFTFKTVDGQDRQVKKDDANQRNPIKFDGVEDMSELSYLNEPAVFHNLRVRYN 111 (1010)
T ss_dssp CCEEEECSSTTCTTCCEEEEEEEEETTEEEEECSSSSEEEEETTTCCBCCCGGGTTCSBGGGCSSCCHHHHHHHHHHHHT
T ss_pred CCceeCccCcCcccCeeEEEEEEecCCeEEEEecCCcEEEecHHhccccCcchhcchhhhhhhhcccHHHHHHHHHHHHh
Confidence 67999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccccCCcEEEEcCCCCCCCCChHHHHHHcccCCC--CCchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHHHH
Q 001346 235 RDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKF 312 (1095)
Q Consensus 235 ~~~iYT~~G~iLiavNP~k~l~~Y~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~ 312 (1095)
+++||||+|++|||||||+++|+|+++++..|+++... ||||||||+.||++|+.+++||||||||||||||||++|+
T Consensus 112 ~~~iYTy~G~ilvavNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~ 191 (1010)
T 1g8x_A 112 QDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKK 191 (1010)
T ss_dssp TTCCEEEETTEEEEECCSSCCSCCSHHHHHHHTTCCTTTSCCCHHHHHHHHHHHHHHHTCCEEEEEEESTTSSHHHHHHH
T ss_pred hCCceeccCceeEEecCCccccCCCHHHHHHhcCCCccCCCccHHHHHHHHHHHHHhcCCCeEEEEeCCCCCCcchHHHH
Confidence 99999999999999999999999999999999998765 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCC-----cchHHHHHhhhHHHHHhcccccCCCCCCCccccEEEEEEcCCCceeeeEeeeeeccccccccc
Q 001346 313 AMQYLAALGGGS-----EGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLEKSRVVQL 387 (1095)
Q Consensus 313 il~yLa~~~~~~-----~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~~~g~i~Ga~i~~yLLEksRVv~~ 387 (1095)
||+|||+++++. +.|+++|+++||||||||||||+||||||||||||+|+||.+|.|+||+|.+|||||||||.|
T Consensus 192 i~~yla~~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~i~F~~~g~i~Ga~i~~yLLEksRvv~q 271 (1010)
T 1g8x_A 192 VIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSEFGKFIEIQFNNAGFISGASIQSYLLEKSRVVFQ 271 (1010)
T ss_dssp HHHHHHHHHCCCCTTTSSHHHHHHHHHHHHHHHHHEECCSSCTTEECSEEEEEEEECTTSCEEEEEEEEECCCGGGGTCC
T ss_pred HHHHHHHhcccCCCcccchHHHHHHHHHHHHHHhCCCcCCCCCCccccceEEEEEECCCCCCcceEEEEEEcCCceeeee
Confidence 999999998753 479999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccchhhhhcCCChhhHHhcCCCCCCCCCcccCCCccccCCcchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 001346 388 AAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNYLNQSECLTIDGVDDAQNFHNLMEALDIVLIRKEDREQTFAMLAAV 467 (1095)
Q Consensus 388 ~~gERnfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~l~~Al~~lG~~~~e~~~i~~iLaAI 467 (1095)
++||||||||||||+|+++++|+.|+|.++.+|+||++++|..++++||+++|..++.||++|||+++++..||+|||||
T Consensus 272 ~~~ERnfHIFYqll~g~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~dD~~~f~~~~~A~~~lg~~~~e~~~i~~ilaaI 351 (1010)
T 1g8x_A 272 SETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDEDEFKITRQAMDIVGFSQEEQMSIFKIIAGI 351 (1010)
T ss_dssp CTTCCCBHHHHHHHHHCCHHHHHHHTCCCGGGCGGGSSSSCCCCBTCCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cCCCCcchhHHHHHcCCCHHHHHHhCCCChHhcchhcCCCccccCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCceEEEecCCCceeecChHHHHHHHHhcCCCHHHHHHhHhhcEEeeCCceEEecCCHHHHHHHHHHHHHHHHHHHH
Q 001346 468 LWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKDSIAKKLTLQQAIDSRDALAKFIYGSLF 547 (1095)
Q Consensus 468 LhLGni~F~~~~~~~~~~~~~~~~l~~aa~LLgv~~~~L~~~L~~~~~~~~~e~i~~~l~~~qA~~~rDalak~LY~~LF 547 (1095)
||||||+|...++ +.+.+.+.+.++.||.||||++++|.++||++++.+++|.+++++|++||.++||||||+||++||
T Consensus 352 LhLGni~F~~~~~-~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~v~~~~~~~qa~~~rdalak~lY~~LF 430 (1010)
T 1g8x_A 352 LHLGNIKFEKGAG-EGAVLKDKTALNAASTVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLF 430 (1010)
T ss_dssp HHHTTCCCBCCTT-SSCBCSCCHHHHHHHHHHTSCHHHHHHHHHSCEEESSSSEEECCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccceEEecCC-CccccCChHHHHHHHHHHCCCHHHHHHHHhCcEEEeCCeeEEeCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999987654 667888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccccccCCCCccceeEeecccCcccCCCCChhHHHhhhhhHHHHHHHHHhhhhhhHhhhhhcCCceeeeccc-
Q 001346 548 DWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVEFE- 626 (1095)
Q Consensus 548 ~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~eY~~EgI~~~~i~f~- 626 (1095)
+|||.+||.+|.+.. ...+||||||||||+|+.|||||||||||||+|||+||+|+|+.||+||.+|||+|+.|+|.
T Consensus 431 ~wlV~~IN~~l~~~~--~~~~IgvLDI~GFE~f~~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~ 508 (1010)
T 1g8x_A 431 LWLVKKINNVLCSER--KAYFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGL 508 (1010)
T ss_dssp HHHHHHHHHHHCCSS--CSEEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCC
T ss_pred HHHHHHHHHHhcCCC--cCceeeeccCcccccCCcCcHHHHHHHhhhHHHHHHHHHHhhHHHHHHhhccCCCcccccccc
Confidence 999999999998654 57899999999999999999999999999999999999999999999999999999999995
Q ss_pred ChHHHHHHHhc-CCCccccccccccCCCCCChHHHHHHHHHHhC-CCCccccCC--CCCeEEeccCccccccccchhhhc
Q 001346 627 DNEECLNLIEK-KPLGVLSLLDEESNFPKATDLTFANKLKQHLG-SNSCFKGER--GRAFSIRHYAGEVPYDTNGFLEKN 702 (1095)
Q Consensus 627 dN~~~ldLie~-~p~Gll~lLDeE~~~p~~sd~~f~~kl~~~~~-~~~~f~~~~--~~~F~I~HyaG~V~Y~~~gfleKN 702 (1095)
||++|||||++ +|.|||+||||||.+|++||.+|++||+++++ +|++|.+++ ...|+|+||||+|+|+++|||+||
T Consensus 509 dn~~~idlie~~~~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~f~~~~~~~~~F~i~HyAG~V~Y~~~gfleKN 588 (1010)
T 1g8x_A 509 DSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKN 588 (1010)
T ss_dssp CSHHHHHHHHCTTTTCHHHHHHHHTTSSSCCHHHHHHHHHHHHTTTCTTEECCTTCSSEEEEEETTEEEEEECTTHHHHH
T ss_pred ChHHHHHHHhcCCCCeeehhhhHHhCCCCCChHHHHHHHHHHhcCCCCCcccCCCCCCCEEEeeeceEEEEeecCccccc
Confidence 99999999998 59999999999999999999999999999999 999998765 369999999999999999999999
Q ss_pred cCcchHHHHHHHhhchHHH-HHHhhcccCCCCCCCCCCCCCCCCCcCccchHHHHHHHHHHHHHHHhccCCeeeEeccCC
Q 001346 703 RDPLQTDIIQLLSSCTCQV-LQLFASKMLKPSPKPAASSQPGALDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPN 781 (1095)
Q Consensus 703 ~D~l~~d~~~ll~~S~~~l-~~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~fk~qL~~L~~~L~~t~~hfIrCIkPN 781 (1095)
+|+|+++++++|++|++++ ..+|..... .+ + ++.....+||+++|+.||+.||++|++|+||||||||||
T Consensus 589 ~D~l~~~~~~ll~~S~~~~~~~lf~~~~~-~~-~-------~~k~~~~~tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN 659 (1010)
T 1g8x_A 589 KDPLQQDLELCFKDSSDNVVTKLFNDPNI-AS-R-------AKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPN 659 (1010)
T ss_dssp HCCCCHHHHHHHTTCSCHHHHHHHHCHHH-HS-C-------CCCSSSCCCHHHHHHHHHHHHHHHHTTSEEEEEEEECSC
T ss_pred cccccHHHHHHHHhCcHHHHHHHhccccc-cc-C-------CCCCCCCCchHHHHHHHHHHHHHHHHhcCCeeeeeecCC
Confidence 9999999999999999886 578875420 00 0 001224589999999999999999999999999999999
Q ss_pred CCCCCcccchhHHHHhhhhhchhHHHHHHhhCCCcccchhhHHHhhhcccccccc--CCChHHHHHHHHHhcCCCCccee
Q 001346 782 SKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQL--SQDPLSISVAVLQQFNVLPEMYQ 859 (1095)
Q Consensus 782 ~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~--~~d~~~~~~~iL~~~~l~~~~yq 859 (1095)
+.+.|+.||..+|++||||+||||+|||+|.|||+|++|.+|+.||++|.+. .+ ..|+++.|+.||..++++++.|+
T Consensus 660 ~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~r~~~~~F~~RY~~L~~~-~~~~~~d~~~~~~~ll~~~~~~~~~~~ 738 (1010)
T 1g8x_A 660 NKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADFVKRYYLLAPN-VPRDAEDSQKATDAVLKHLNIDPEQYR 738 (1010)
T ss_dssp SSCCTTCCCHHHHHHHHHHSSHHHHHHHHTTSCCEEEEHHHHHHHHGGGSTT-CCTTCSCHHHHHHHHHHHTTCCGGGEE
T ss_pred cccccCCcChhhcchhcccCccHHHHHHHHhCCcccccHHHHHHHHHHhCCC-CCcCCCCHHHHHHHHHHHcCCCcccee
Confidence 9999999999999999999999999999999999999999999999999987 44 35889999999999999999999
Q ss_pred eceeeeeeccchhHHhhhhhhhHHHH-HHHHHH
Q 001346 860 VGYTKLYLRSGQLAALEDRRKQVLQA-IIRLQK 891 (1095)
Q Consensus 860 iGkTKVFLr~g~l~~LE~~R~~~l~a-ai~IQa 891 (1095)
+|+||||||.+++..||.+|...+.. ++.||-
T Consensus 739 ~G~tkVF~r~~~l~~LE~~R~~~l~~~~~~iQY 771 (1010)
T 1g8x_A 739 FGITKIFFRAGQLARIEEAREQRLGSEQTKSDY 771 (1010)
T ss_dssp ECSSEEEECTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ehhhhhhhcccchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988864 555663
No 9
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=100.00 E-value=1.2e-197 Score=1798.47 Aligned_cols=716 Identities=43% Similarity=0.726 Sum_probs=635.4
Q ss_pred CCcEEEEEcC---CCCEEEEEEEEeeCCeEEEEecCCeEEEEeCCCcccCCCCcccCcCCccccccCCchhHHHHHHHHh
Q 001346 157 KKLRVWCRLE---DGKWESGMIQSTSGDEAFVLLSNGNVVKVSTGELLPANPDILEGVDDLIQLSYLNEPSVLNNIQYRY 233 (1095)
Q Consensus 157 ~~~~vW~~~~---~~~~~~~~v~~~~~~~~~v~~~~g~~~~v~~~~~~~~np~~~~~~~Dl~~L~~LnE~svL~~L~~Ry 233 (1095)
.+.+||+|++ +++|.+|+|++.+++.++|..++|++++|+.+++.|+||+.+++++||+.|++|||++|||||+.||
T Consensus 31 ~~~~vWv~~~~~~~~~~~~~~v~~~~~~~~~v~~~~g~~~~v~~~~v~~~np~~~~~~~Dl~~L~~l~E~svL~nL~~Ry 110 (770)
T 1w9i_A 31 DKRYIWYNPDPKERDSYECGEIVSETSDSFTFKTVDGQDRQVKKDDANQRNPIKFDGVEDMSELSYLNEPAVFHNLRVRY 110 (770)
T ss_dssp -CCEEEECSSTTCTTCCEEEEEEEECSSEEEEECTTSCEEEEETTTCEECCCGGGTTCSBGGGCSCCCHHHHHHHHHHHH
T ss_pred CCCEEEeeCCcccccCceEEEEEEecCCeEEeecCCCcEEEEchHhccccCcccccchhhhhhhccCCHHHHHHHHHHHH
Confidence 4789999999 8899999999999999999988999999999999999999999999999999999999999999999
Q ss_pred hcCccccccCCcEEEEcCCCCCCCCChHHHHHHcccCCC--CCchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHHH
Q 001346 234 SRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAK 311 (1095)
Q Consensus 234 ~~~~iYT~~G~iLiavNP~k~l~~Y~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K 311 (1095)
.+++||||+|++|||||||+++|+|+++++..|+++... ||||||||+.||++|+++++||||||||||||||||++|
T Consensus 111 ~~~~IYTy~G~iLvavNPyk~l~iY~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK 190 (770)
T 1w9i_A 111 NQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTK 190 (770)
T ss_dssp HTTCCEEEETTEEEEECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHH
T ss_pred hcCCceeccCceeEEecCCccccCCCHHHHHHhcCCCcCCCCccHHHHHHHHHHHHHhhcCCcEEEEecCCCCcchHHHH
Confidence 999999999999999999999999999999999988654 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCC-----cchHHHHHhhhHHHHHhcccccCCCCCCCccccEEEEEEcCCCceeeeEeeeeecccccccc
Q 001346 312 FAMQYLAALGGGS-----EGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLEKSRVVQ 386 (1095)
Q Consensus 312 ~il~yLa~~~~~~-----~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~~~g~i~Ga~i~~yLLEksRVv~ 386 (1095)
+||+|||+++++. ..|+++|+++||||||||||||+||||||||||||+|+||.+|.|+||+|.+|||||||||.
T Consensus 191 ~i~~yla~~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~yLLEKSRVv~ 270 (770)
T 1w9i_A 191 KVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVF 270 (770)
T ss_dssp HHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHEECCSSCTTEESSEEEEEEEECTTSCEEEEEEEEECCCGGGGTC
T ss_pred HHHHHHHHhccccCCcccCcHHHHHHHHHHHHHHhCCCcCCCCCCcCCcceEEEEEECCCCCEeeeEEEEEeccCceeec
Confidence 9999999998753 47999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcccchhhhhcCCChhhHHhcCCCCCCCCCc-ccCCCccccCCcchHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 001346 387 LAAGERSYHIFYQLCAGAPSFLKERLNLKVANDYNY-LNQSECLTIDGVDDAQNFHNLMEALDIVLIRKEDREQTFAMLA 465 (1095)
Q Consensus 387 ~~~gERnfHIFYqLl~G~~~~~~~~l~L~~~~~y~y-L~~~~~~~~~~~dD~~~f~~l~~Al~~lG~~~~e~~~i~~iLa 465 (1095)
|++||||||||||||+|+++++|+.|+|.++.+|+| |+++ |..++++||+++|..++.||++|||+++++..||+|||
T Consensus 271 q~~gERnfHIFYqLlaG~~~~~~~~l~L~~~~~y~yll~~g-~~~~~~~dD~~~f~~~~~Am~~lGf~~~e~~~i~~ila 349 (770)
T 1w9i_A 271 QSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSG-CVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIFKIIA 349 (770)
T ss_dssp CCTTCCSBHHHHHHHHHCCHHHHHHHTCCCGGGCTTTSSSS-CCCCTTCCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred ccCCCCcchhHHHHhcCCCHHHHHHhCCCChhhccccccCC-ccccCCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 7775 67899999999999999999999999999999999999
Q ss_pred HHHHhcCceEEEecCCCceeecChHHHHHHHHhcCCCHHHHHHhHhhcEEeeCCceEEecCCHHHHHHHHHHHHHHHHHH
Q 001346 466 AVLWLGNISFQVIDNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQAGKDSIAKKLTLQQAIDSRDALAKFIYGS 545 (1095)
Q Consensus 466 AILhLGni~F~~~~~~~~~~~~~~~~l~~aa~LLgv~~~~L~~~L~~~~~~~~~e~i~~~l~~~qA~~~rDalak~LY~~ 545 (1095)
||||||||+|. .++++.+.+.+.+.++.||.||||++++|.++|++|++.+++|.++++++++||.++||||||+||++
T Consensus 350 aILhLGNi~F~-~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~aL~~~~~~~~~e~v~~~~~~~qA~~~rdalaK~lY~r 428 (770)
T 1w9i_A 350 GILHLGNIKFE-KGAGEGAVLKDKTALNAASTVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGR 428 (770)
T ss_dssp HHHHHHTCCCE-ECSSSSEECSCCHHHHHHHHHHTCCHHHHHHHHHSCEEEETTEEEECCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCceEe-cCCCCccccCChHHHHHHHHHhCCCHHHHHHHhhCcEEEeCCeeEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999 55567788899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccccCCCCccceeEeecccCcccCCCCChhHHHhhhhhHHHHHHHHHhhhhhhHhhhhhcCCceeeecc
Q 001346 546 LFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNRHLFKLEQEEYELDGVDWTRVEF 625 (1095)
Q Consensus 546 LF~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~eY~~EgI~~~~i~f 625 (1095)
||+|||.+||.+|..... ..+||||||||||+|+.|||||||||||||||||+||+|+|+.||+||.+|||+|+.|+|
T Consensus 429 LF~wlV~~IN~~l~~~~~--~~~IGvLDI~GFE~F~~NsFEQlCINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f 506 (770)
T 1w9i_A 429 LFLWLVKKINNVLCQERK--AYFIGVLDIYGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDF 506 (770)
T ss_dssp HHHHHHHHHHHHHCCSCC--SEEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCG
T ss_pred HHHHHHHHHHHHhcCCCC--CCeeeeccCccccccccCCHHHHHHHhhHHHHHHHHHhhhhHHHHHHhhccCCCceeecc
Confidence 999999999999986433 789999999999999999999999999999999999999999999999999999999999
Q ss_pred c-ChHHHHHHHhcC-CCccccccccccCCCCCChHHHHHHH-HHHhCCCCccccCCC--CCeEEeccCccccccccchhh
Q 001346 626 E-DNEECLNLIEKK-PLGVLSLLDEESNFPKATDLTFANKL-KQHLGSNSCFKGERG--RAFSIRHYAGEVPYDTNGFLE 700 (1095)
Q Consensus 626 ~-dN~~~ldLie~~-p~Gll~lLDeE~~~p~~sd~~f~~kl-~~~~~~~~~f~~~~~--~~F~I~HyaG~V~Y~~~gfle 700 (1095)
. ||++|||||+++ |.|||+||||||.+|++||.+|++|| .+++++|++|.+++. ..|+|+||||+|+|+++|||+
T Consensus 507 ~~dn~~~idLiek~~p~GilslLDEec~~p~~tD~~f~~kL~~~~~~~~~~f~~p~~~~~~F~I~HyAG~V~Y~~~gfle 586 (770)
T 1w9i_A 507 GLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEIQDWLE 586 (770)
T ss_dssp GGGGHHHHHHHHCTTTTCHHHHHHHHHSSSSCCHHHHHHHHHHHHTTTSTTEECCSSCSSEEEEEETTEEEEEECTTHHH
T ss_pred ccCcHHHHHHHhCCCCCchhhhhhhhhCCCCCChHHHHHHHHHHhcCCCCCccCCCCCCCceEeeccCccccccccChhh
Confidence 5 999999999984 99999999999999999999999996 567889999987653 799999999999999999999
Q ss_pred hccCcchHHHHHHHhhchHHH-HHHhhcccCCCCCCCCCCCCCCCCCcCccchHHHHHHHHHHHHHHHhccCCeeeEecc
Q 001346 701 KNRDPLQTDIIQLLSSCTCQV-LQLFASKMLKPSPKPAASSQPGALDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIK 779 (1095)
Q Consensus 701 KN~D~l~~d~~~ll~~S~~~l-~~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~fk~qL~~L~~~L~~t~~hfIrCIk 779 (1095)
||+|+|+++++++|++|++++ ..+|..... .+. ++.....+||+++||.||+.||++|++|+||||||||
T Consensus 587 KNkD~l~~~~~~ll~~S~~~~v~~Lf~~~~~-~~~--------~~k~~~~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIk 657 (770)
T 1w9i_A 587 KNKDPLQQDLELCFKDSSDNVVTKLFNDPNI-ASR--------AKKGANFITVAAQYKEQLASLMATLETTNPHFVRCII 657 (770)
T ss_dssp HHHCCCCHHHHHHHHTCSSTTHHHHHHCHHH-HCC--------CEETTEECCHHHHHHHHHHHHHHHHHTSEEEEEEEEC
T ss_pred hccCcccHHHHHHHHhchHHHHHHHhhccCC-CCC--------CCCCCCCcchhHHHHHHHHHHHHHHHhcCceeeeeec
Confidence 999999999999999999885 678875321 000 0012235899999999999999999999999999999
Q ss_pred CCCCCCCcccchhHHHHhhhhhchhHHHHHHhhCCCcccchhhHHHhhhcccccccc--CCChHHHHHHHHHhcCCCCcc
Q 001346 780 PNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRYGVLLSEKQL--SQDPLSISVAVLQQFNVLPEM 857 (1095)
Q Consensus 780 PN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~--~~d~~~~~~~iL~~~~l~~~~ 857 (1095)
||+.+.|+.||..+|++||||+||||+|||+|+|||+|++|.+|++||++|++ ..+ ..|+++.|+.||+.++++++.
T Consensus 658 PN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~f~eF~~RY~~L~~-~~~~~~~d~k~~~~~lL~~~~~~~~~ 736 (770)
T 1w9i_A 658 PNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADFVKRYYLLAP-NVPRDAEDSQKATDAVLKHLNIDPEQ 736 (770)
T ss_dssp SCSSCCSSCCCHHHHHHHHHHSSHHHHHHHTTSSCCEEEESCC------------------------------------C
T ss_pred CCcccccCccCchhhHhHhcccchHHHHHHHHhcCcccccHHHHHHHHHHhcc-ccccCCCCHHHHHHHHHHhcCCCccc
Confidence 99999999999999999999999999999999999999999999999999998 444 247889999999999999999
Q ss_pred eeeceeeeeeccchhHHhhhhhhhHHHHH
Q 001346 858 YQVGYTKLYLRSGQLAALEDRRKQVLQAI 886 (1095)
Q Consensus 858 yqiGkTKVFLr~g~l~~LE~~R~~~l~aa 886 (1095)
|++|+||||||.+++..||++|.+.+..+
T Consensus 737 ~~~G~TKVF~r~~~l~~LE~~R~~~l~~~ 765 (770)
T 1w9i_A 737 FRFGITKIFFRAGQLARIEEARELRGDYK 765 (770)
T ss_dssp CCCCSSEEEECTTTTTC------------
T ss_pred EEeCCeeEEecccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887644
No 10
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=100.00 E-value=3.7e-197 Score=1807.88 Aligned_cols=731 Identities=37% Similarity=0.614 Sum_probs=662.8
Q ss_pred EEEEEcCCCCEEEEEEEEeeCCeEEEEec--CCeEEEEeCCCcccCCCCcccCcCCccccccCCchhHHHHHHHHhhcCc
Q 001346 160 RVWCRLEDGKWESGMIQSTSGDEAFVLLS--NGNVVKVSTGELLPANPDILEGVDDLIQLSYLNEPSVLNNIQYRYSRDM 237 (1095)
Q Consensus 160 ~vW~~~~~~~~~~~~v~~~~~~~~~v~~~--~g~~~~v~~~~~~~~np~~~~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~ 237 (1095)
+||+|+++++|..|+|++..++.++|.+. +|++++|+.+++.|+||+..+++|||+.|++|||++|||||+.||.+++
T Consensus 2 ~vWv~~~~~~~~~~~v~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~Dl~~L~~L~E~svL~nL~~Ry~~~~ 81 (784)
T 2v26_A 2 PVWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDR 81 (784)
T ss_dssp CEEEEETTTEEEEEEEEEECSSEEEEEC----CCCEEEEGGGCEECCSCSSCCCSBGGGSSSCSHHHHHHHHHHHHHTTC
T ss_pred eEEEEcCCCcEEEEEEEEecCCeEEEEEECCCCCEEEEehhhccccccccccccchhhhhhhccHHHHHHHHHHHHhcCc
Confidence 69999999999999999999999999863 6889999999999999999999999999999999999999999999999
Q ss_pred cccccCCcEEEEcCCCCC-CCCChHHHHHHcccCCC--CCchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHHHHHH
Q 001346 238 IYSKAGPVLIAVNPFKAV-PIYGNKFITAYRQKVMD--SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAM 314 (1095)
Q Consensus 238 iYT~~G~iLiavNP~k~l-~~Y~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il 314 (1095)
||||+|++|||||||+++ |+|+++++..|+++... ||||||||++||++|+++++||||||||||||||||++|+||
T Consensus 82 IYTy~G~iLiaVNPyk~l~~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~i~ 161 (784)
T 2v26_A 82 IYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVL 161 (784)
T ss_dssp CEEEETTEEEEECCSSCCTTTTSHHHHHHHTTCCTTSSCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHH
T ss_pred eeeeccceEEEecCCcCcCCCCCHHHHHHHhCCCcccCCchHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCceehHHHHH
Confidence 999999999999999999 69999999999998765 899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCcchHHHHHhhhHHHHHhcccccCCCCCCCccccEEEEEEcCCCceeeeEeeeeeccccccccccCCCCcc
Q 001346 315 QYLAALGGGSEGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEIHFSAFGKICGAKIQTFLLEKSRVVQLAAGERSY 394 (1095)
Q Consensus 315 ~yLa~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~~~g~i~Ga~i~~yLLEksRVv~~~~gERnf 394 (1095)
+|||+++++...|+++|+++||||||||||||+||||||||||||+|+||.+|+|+||+|++|||||||||.|++|||||
T Consensus 162 ~yla~~~~~~~~ie~~il~snpiLEAFGNAKT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~YLLEKSRVv~q~~gERNf 241 (784)
T 2v26_A 162 RYLTESYGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNY 241 (784)
T ss_dssp HHHHHHHC------CHHHHTHHHHHHHHEECCSSCTTEECSEEEEEEEECTTSCEEEEEEEEECCCCGGGTCCCTTCCSB
T ss_pred HHHHhhcCCCCcHHHHHHHHHHHHHHhCCCcCCCCCCcchhheEEEEEEecCCcEeeeeeeeeeccCCeEeeecCCCCcc
Confidence 99999987766899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhcCCChhhHHhcCCCCCCCCCcccCCCc--------------------------cccCCcchHHHHHHHHHHHh
Q 001346 395 HIFYQLCAGAPSFLKERLNLKVANDYNYLNQSEC--------------------------LTIDGVDDAQNFHNLMEALD 448 (1095)
Q Consensus 395 HIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~--------------------------~~~~~~dD~~~f~~l~~Al~ 448 (1095)
|||||||+|+++++|+.|+|.++.+|+||+++.+ ..++++||+++|..++.||+
T Consensus 242 HIFYqLlaG~~~~~~~~l~L~~~~~y~yL~~g~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~dD~~~f~~~~~Am~ 321 (784)
T 2v26_A 242 HIFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMK 321 (784)
T ss_dssp HHHHHHHHHSCHHHHHHTTCCCGGGCHHHHTSCCCCBCCHHHHTTSCGGGCCHHHHHHCCBCCSSCCHHHHHHHHHHHHH
T ss_pred hhhHHHHcCCCHHHHHHcCCCChhhCccccCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999753 23567899999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHHHHhcCceEEEecC-CCceee--cChHHHHHHHHhcCCCHHHHHHhHhhcEEe-----eCCc
Q 001346 449 IVLIRKEDREQTFAMLAAVLWLGNISFQVIDN-ENHVEV--IADEAVTTAAMLMGCSSDELMLALSTHKIQ-----AGKD 520 (1095)
Q Consensus 449 ~lG~~~~e~~~i~~iLaAILhLGni~F~~~~~-~~~~~~--~~~~~l~~aa~LLgv~~~~L~~~L~~~~~~-----~~~e 520 (1095)
+|||+++|+..||+|||||||||||+|...++ ++.+.+ .+.+.++.||.||||++++|.++|++|++. ++++
T Consensus 322 ~lG~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~~v~~~~~~~l~~~a~LLgv~~~~L~~aL~~r~~~t~~g~~~ge 401 (784)
T 2v26_A 322 KIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGT 401 (784)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHTCCEEECTTTTSSEEECGGGHHHHHHHHHHHTCCHHHHHHHHHEEEC----------
T ss_pred HcCCCHHHHHHHHHHHHHHHhcccceeeeccCCCCccccccCCHHHHHHHHHHhCCCHHHHHHHHhhcEEeccccCCCCC
Confidence 99999999999999999999999999997432 233444 467899999999999999999999999987 6789
Q ss_pred eEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccceeEeecccCcccCCCCChhHHHhhhhhHHHHHH
Q 001346 521 SIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINYANERLQQH 600 (1095)
Q Consensus 521 ~i~~~l~~~qA~~~rDalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNEkLQ~~ 600 (1095)
.++++++++||.++||||||+||++||+|||.+||.+|... ....+||||||||||+|+.|||||||||||||||||+
T Consensus 402 ~i~~~l~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~--~~~~~IGvLDI~GFE~f~~NsFEQlcINyaNEkLQq~ 479 (784)
T 2v26_A 402 VIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFE--TSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQF 479 (784)
T ss_dssp -CEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCS--CCSEEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHH
T ss_pred eEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc--cccceeeecccCCcccCCcCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999754 3467999999999999999999999999999999999
Q ss_pred HHHhhhhhhHhhhhhcCCceeeecccChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCccccCC--
Q 001346 601 FNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNSCFKGER-- 678 (1095)
Q Consensus 601 f~~~~F~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~~p~Gll~lLDeE~~~p~~sd~~f~~kl~~~~~~~~~f~~~~-- 678 (1095)
||+|+|+.||+||.+|||+|+.|+|.||++|||||+++|.|||+||||||.+|++||.+|++||++++++|++|..++
T Consensus 480 F~~~~f~~EqeeY~~EgI~w~~i~f~DN~~~idLie~kp~GIlslLDEe~~~p~~tD~~f~~kl~~~~~~~~~~~~p~~~ 559 (784)
T 2v26_A 480 FNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKS 559 (784)
T ss_dssp HHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHHHHHSSSCCHHHHHHHHHHHTTTCTTEECGGGC
T ss_pred HHHhhhhhHHHHHHhcCCCcccccccChHHHHHHHhhccccHHHHHHHHhcCCCCChHHHHHHHHHHhCCCcccccCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999885442
Q ss_pred ----------CCCeEEeccCccccccccchhhhccCcchHHHHHHHhhchHHH-HHHhhcccCCCCCCCCCCCCCCCCCc
Q 001346 679 ----------GRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQV-LQLFASKMLKPSPKPAASSQPGALDT 747 (1095)
Q Consensus 679 ----------~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l-~~lf~~~~~~~~~~~~~~~~~~~~~~ 747 (1095)
...|+|+||||+|+|+++|||+||+|+|+++++++|++|++++ ..+|.......+. + +.++...
T Consensus 560 ~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~l~~Lf~~~~~~~~~----~-~~~~~~~ 634 (784)
T 2v26_A 560 KLAIHRNIRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESRDKFIRELFESSTNNNKD----T-KQKAGKL 634 (784)
T ss_dssp SSGGGTTSCTTSEEEEEETTEEEEEECTTHHHHTBCCCCHHHHHHHHTCSCHHHHHHC---------------------C
T ss_pred cccccccccCCCceEeeecCccEeeeccCHHHhccchhhHHHHHHHHhchhhHHHHHcccccccccC----c-ccCCCCC
Confidence 2489999999999999999999999999999999999999886 5688754211110 0 0011123
Q ss_pred CccchHHHHHHHHHHHHHHHhccCCeeeEeccCCCCCCCcccchhHHHHhhhhhchhHHHHHHhhCCCcccchhhHHHhh
Q 001346 748 QKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEFAGRY 827 (1095)
Q Consensus 748 ~~~tv~~~fk~qL~~L~~~L~~t~~hfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY 827 (1095)
...||+++||.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|||+|+|||+|++|.+|++||
T Consensus 635 ~~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~f~eF~~RY 714 (784)
T 2v26_A 635 SFISVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHELYNMY 714 (784)
T ss_dssp CCCBHHHHHHHHHHHHHHHHHTSEEEEEEEECCCSSCCSSCCCHHHHHHHHHHTTHHHHHHHHTSCCSEEEEHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHccCCeeEEEecCCcccccCccccccccccccccccHHHHHHHHhcCCccccHHHHHHHH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccccCCChHHHHHHHHHhcCCCCcceeeceeeeeeccchhHHhhhhhhhHHHHHHHHHHHHhhhh
Q 001346 828 GVLLSEKQLSQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSGQLAALEDRRKQVLQAIIRLQKCFRGYQ 897 (1095)
Q Consensus 828 ~~L~~~~~~~~d~~~~~~~iL~~~~l~~~~yqiGkTKVFLr~g~l~~LE~~R~~~l~aai~IQa~~Rg~~ 897 (1095)
++|++......|++..|+.||+.+++++++|++|+||||||.++++.||+.+.........|++.+|+|+
T Consensus 715 ~~L~~~~~~~~d~~~~~~~ll~~~~~~~~~~~~G~TKVF~r~g~~~~le~~~~~~~~~~~~ii~~v~~wl 784 (784)
T 2v26_A 715 KKYMPDKLARLDPRLFCKALFKALGLNEIDYKFGLTKVFFRPGKFAEFDQIMKSDPDHLAELVKRVNHWL 784 (784)
T ss_dssp GGGCCHHHHTSCHHHHHHHHHHHTTCCGGGEEECSSEEEECTTCHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_pred hhcCCcccCCCCHHHHHHHHHHHcCCCcCcEEeCCceEEEcCCHHHHHHHHHhhCHHHHHHHHHHHHhhC
Confidence 9999887667799999999999999999999999999999999999999987655555555668888874
No 11
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=100.00 E-value=2.1e-190 Score=1726.51 Aligned_cols=663 Identities=39% Similarity=0.646 Sum_probs=609.0
Q ss_pred ccCcCCccccccCCchhHHHHHHHHhhcCccccccCCcEEEEcCCCCCCCCChHHHHHHcccCCC--CCchhHHHHHHHH
Q 001346 208 LEGVDDLIQLSYLNEPSVLNNIQYRYSRDMIYSKAGPVLIAVNPFKAVPIYGNKFITAYRQKVMD--SPHVYAIADTAYN 285 (1095)
Q Consensus 208 ~~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~~Y~~~~~~~y~~~~~~--~PHiyavA~~Ay~ 285 (1095)
.+++|||+.|++|||++|||||+.||.+++||||+|++|||||||+++|+|+++++..|+++... ||||||||++||+
T Consensus 7 ~~~~~Dl~~L~~l~E~~vl~nL~~Ry~~~~IYTy~G~iLiavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~ 86 (697)
T 1lkx_A 7 AEGVPDFVLLNQITENAFIENLTMRHKSDNIYTYIGDVVISTNPFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYR 86 (697)
T ss_dssp --CCSSGGGCSSCSHHHHHHHHHHHHHTTCCEEESSSCEEEECCSSCCSCCSHHHHHHHSSCCGGGSCCCHHHHHHHHHH
T ss_pred ccCCcccccCCCCCHHHHHHHHHHHHhcCCcEEeeCCeEEEEcCCcCCCCCCHHHHHHHhCCCCCCCCchHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999988654 8999999999999
Q ss_pred HHhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHhcC-CC---cchHHHHHhhhHHHHHhcccccCCCCCCCccccEEEE
Q 001346 286 EMMGDGVNQSIIISGESGAGKTETAKFAMQYLAALGG-GS---EGIEYEILQTNHILEAFGNAKTSRNDNSSRFGKLIEI 361 (1095)
Q Consensus 286 ~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~~-~~---~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l 361 (1095)
+|+++++||||||||||||||||++|+||+|||++++ +. ..|+++|+++||||||||||||+||||||||||||+|
T Consensus 87 ~m~~~~~nQsIiisGESGAGKTe~tK~i~~yla~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i 166 (697)
T 1lkx_A 87 SMRQSQENQCVIISGESGAGKTEASKKIMQFLTFVSSNQSPNGERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEM 166 (697)
T ss_dssp HHHHHCCCEEEEEECSTTSSHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHBBCCSSCSSCBCSEEEEEE
T ss_pred HHHhcCCCcEEEecCCCCCCchhhHHHHHHHHHhhcCCCCCccccHHHHHHhcchHHHHhcCcccCCCCCcchhheeEEE
Confidence 9999999999999999999999999999999999987 32 2689999999999999999999999999999999999
Q ss_pred EEcCCCceeeeEeeeeeccccccccccCCCCcccchhhhhcCCChhhHHhcCCC-CCCCCCcccCCCccccCCcchHHHH
Q 001346 362 HFSAFGKICGAKIQTFLLEKSRVVQLAAGERSYHIFYQLCAGAPSFLKERLNLK-VANDYNYLNQSECLTIDGVDDAQNF 440 (1095)
Q Consensus 362 ~f~~~g~i~Ga~i~~yLLEksRVv~~~~gERnfHIFYqLl~G~~~~~~~~l~L~-~~~~y~yL~~~~~~~~~~~dD~~~f 440 (1095)
+||.+|.|+||+|++|||||||||.|++||||||||||||+|+++++++.|+|. ++.+|+||++++|..++++||+++|
T Consensus 167 ~F~~~g~i~Ga~I~~yLLEKSRVv~q~~gERnfHIFYqllaG~~~~~~~~l~L~~~~~~y~yL~~~~~~~~~~~dD~~~f 246 (697)
T 1lkx_A 167 QFNAVGSPIGGKITNYLLEKSRVVGRTQGERSFHIFYQMLKGLSQSKLDELGLTPNAPAYEYLKKSGCFDVSTIDDSGEF 246 (697)
T ss_dssp EECTTCCEEEEEEEEECCCGGGGTCCCTTCCCBHHHHHHHTTSCHHHHHHHTCCSCGGGSHHHHHTTCCCCTTCCHHHHH
T ss_pred EECCCCCEeeeeeeeeeccCceeeeecCCCCceeehhHHhcCCCHHHHHHhcCCCChhhCccccCCCCcccCCCchHHHH
Confidence 999999999999999999999999999999999999999999999999999998 8999999999999999999999999
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCceEEEe----cCCCceeecChHHHHHHHHhcCCCHHHHHHhHhhcEEe
Q 001346 441 HNLMEALDIVLIRKEDREQTFAMLAAVLWLGNISFQVI----DNENHVEVIADEAVTTAAMLMGCSSDELMLALSTHKIQ 516 (1095)
Q Consensus 441 ~~l~~Al~~lG~~~~e~~~i~~iLaAILhLGni~F~~~----~~~~~~~~~~~~~l~~aa~LLgv~~~~L~~~L~~~~~~ 516 (1095)
..++.||++|||+++|+..||+|||||||||||+|... ++.+.+++.+.+.++.||.||||++++|.++|++|++.
T Consensus 247 ~~~~~Am~~lG~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~~~~~v~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~ 326 (697)
T 1lkx_A 247 KIIVKAMETLGLKESDQNSIWRILAAILHIGNITFAEAAEQRTGTTTVKVSDTKSLAAAASCLKTDQQSLSIALCYRSIS 326 (697)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCEEEETTC----CEEEESSHHHHHHHHHHHTSCHHHHHHHHHBCC--
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccceEeecccccCCCCcceeCCHHHHHHHHHhhCCCHHHHHHHHhccEEe
Confidence 99999999999999999999999999999999999872 22357888999999999999999999999999999999
Q ss_pred eC----CceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccceeEeecccCcccCCCCChhHHHhhh
Q 001346 517 AG----KDSIAKKLTLQQAIDSRDALAKFIYGSLFDWIVEQINKSLEVGKQCTGRSINILDIYGFESFKKNSFEQFCINY 592 (1095)
Q Consensus 517 ~~----~e~i~~~l~~~qA~~~rDalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINy 592 (1095)
++ +|.++++++++||.++||||||+||++||+|||.+||.+|.+.. ....+||||||||||+|+.||||||||||
T Consensus 327 ~~~g~~~e~i~~~l~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~~-~~~~~IGvLDI~GFE~f~~NsFEQlcINy 405 (697)
T 1lkx_A 327 TGVGKRCSVISVPMDCNQAAYSRDALAKALYERLFNWLVSKINTIINCTT-EKGPVIGILDIYGFEVFQNNSFEQLNINF 405 (697)
T ss_dssp --------CCCCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS-CCCCEEEEEECCCCCCCSSBCHHHHHHHH
T ss_pred eccCCCCCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CCceeEEeeccccccccCcCCHHHHHHHh
Confidence 99 99999999999999999999999999999999999999998643 34689999999999999999999999999
Q ss_pred hhHHHHHHHHHhhhhhhHhhhhhcCCceeeecccChHHHHHHHhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCC
Q 001346 593 ANERLQQHFNRHLFKLEQEEYELDGVDWTRVEFEDNEECLNLIEKKPLGVLSLLDEESNFPKATDLTFANKLKQHLGSNS 672 (1095)
Q Consensus 593 aNEkLQ~~f~~~~F~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~~p~Gll~lLDeE~~~p~~sd~~f~~kl~~~~~~~~ 672 (1095)
|||||||+||+|+|+.||+||.+|||+|+.|+|.||++|||||+++|.|||+||||||.+|++||.+|++||++++++|+
T Consensus 406 ~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dN~~~idLie~kp~GilslLDEec~~p~~tD~~f~~kl~~~~~~~~ 485 (697)
T 1lkx_A 406 CNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLDEACLIAKSTDQTFLDSICKQFEKNP 485 (697)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHTTSSSSSHHHHHHHHHHSTTCCHHHHHHHHHHHSSSST
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCHHHHHHHhcccCChhhhhHHhhCCCCCChHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCC--------CCCeEEeccCccccccccchhhhccCcchHHHHHHHhhchHHH-HHHhhcccCCCCCCCCCCCCCC
Q 001346 673 CFKGER--------GRAFSIRHYAGEVPYDTNGFLEKNRDPLQTDIIQLLSSCTCQV-LQLFASKMLKPSPKPAASSQPG 743 (1095)
Q Consensus 673 ~f~~~~--------~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l-~~lf~~~~~~~~~~~~~~~~~~ 743 (1095)
+|.+++ ..+|+|+||||+|+|+++|||+||+|+|+++++++|++|++++ ..+|......
T Consensus 486 ~f~~~~~~~~k~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~~~~l~~lf~~~~~~------------ 553 (697)
T 1lkx_A 486 HLQSYVVSKDRSIGDTCFRLKHYAGDVTYDVRGFLDKNKDTLFGDLISSMQSSSDPLVQGLFPPTRPE------------ 553 (697)
T ss_dssp TEECTTTSCCTTSCTTEEEEEETTEEEEEECTTHHHHHHCCCCHHHHHHHHTCCSHHHHHHCC-----------------
T ss_pred ccccCCCCCCCccccCceeeeeeeeEEEEccCChhhhhcccccHHHHHHHhccchHHHHHhccccccc------------
Confidence 997532 4789999999999999999999999999999999999999886 5688643210
Q ss_pred CCCcCccchHHHHHHHHHHHHHHHhccCCeeeEeccCCCCCCCcccchhHHHHhhhhhchhHHHHHHhhCCCcccchhhH
Q 001346 744 ALDTQKQSVGTKFKGQLFKLMHQLENTRPHFIRCIKPNSKQLPGIYEEDLVLQQFRCCGVLEIVRISRSGYPTRMRHQEF 823 (1095)
Q Consensus 744 ~~~~~~~tv~~~fk~qL~~L~~~L~~t~~hfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF 823 (1095)
+...+.+||+++||.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|||+|+|||+|++|.+|
T Consensus 554 ~~~~r~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~eF 633 (697)
T 1lkx_A 554 DSKKRPETAGSQFRNAMNALITTLLACSPHYVRCIKSNDNKQAGVIDEDRVRHQVRYLGLLENVRVRRAGFAGRIEYTRF 633 (697)
T ss_dssp ------CCHHHHHHHHHHHHHHHHTTSEEEEEEEECCCTTCCTTCCCHHHHHHHHHHHTSHHHHHHHHHSCSBCCBSHHH
T ss_pred cccCCCCcHHHHHHHHHHHHHHHHHccCCcceEeecCCCcCCCCCcChhhccccCcccccHHHHHHHhcCCCccccHHHH
Confidence 01223579999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccccccc--CCChHHHHHHHHHhcCCCCcceeeceeeeeeccc-hhHHhhhhhhhHH
Q 001346 824 AGRYGVLLSEKQL--SQDPLSISVAVLQQFNVLPEMYQVGYTKLYLRSG-QLAALEDRRKQVL 883 (1095)
Q Consensus 824 ~~RY~~L~~~~~~--~~d~~~~~~~iL~~~~l~~~~yqiGkTKVFLr~g-~l~~LE~~R~~~l 883 (1095)
++||++|++...+ ..|+++.|+.||+.+++++++|++|+||||||.+ ++..||++|..++
T Consensus 634 ~~RY~~L~~~~~~~~~~~~k~~~~~ll~~~~~~~~~~~~G~TKVF~r~~~~l~~LE~~R~~~l 696 (697)
T 1lkx_A 634 YNRYKMLCKKTWPSFNGTAKQATELILQQHNIDKEEIRMGKTKVFIRNPTTLFYFEEKRELEM 696 (697)
T ss_dssp HTTSCSSSCC---------CHHHHHHHHTTCCCGGGEEECSSBEEESSSHHHHHHHTCC----
T ss_pred HHHHHHhCcccccccCCCHHHHHHHHHHHcCCCcCcEEeCCeeEEEeCCchHHHHHHHHHhhC
Confidence 9999999987654 3578899999999999999999999999999996 7899999998654
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=99.23 E-value=1.1e-10 Score=150.18 Aligned_cols=204 Identities=19% Similarity=0.191 Sum_probs=127.7
Q ss_pred eccchhHHhhhhhh---hHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh-hhccchhhH--
Q 001346 867 LRSGQLAALEDRRK---QVLQAIIRLQKCFRGYQARSRFRELCNGVITLQSFARGENTRRRHASLGKS-CSAVVPEIR-- 940 (1095)
Q Consensus 867 Lr~g~l~~LE~~R~---~~l~aai~IQa~~Rg~~aRr~y~~lr~aai~IQs~~Rg~~aRr~y~~lr~~-AA~~IQ~~~-- 940 (1095)
++....+.+.+.+. +..+||+.||++||||++|+.|..++.+++.||++|||+.+|+.|..+++. ||+.||++|
T Consensus 797 IQ~~~Rg~~aR~~~~~lr~~~AAi~IQs~~Rg~~~Rk~y~~lr~aai~IQs~~Rg~laRr~~~~lr~~~aav~IQ~~~Rg 876 (1080)
T 2dfs_A 797 IQRYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRG 876 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhcccccccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444332 234589999999999999999999999999999999999999999998876 899999999
Q ss_pred -------HhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhcCchHHHHHHHhhchhhccccC--------------------
Q 001346 941 -------DEQLREIICLQSAIRGWLVRKQLK-MHKLKQSNPVNAKVKRRSGRKSSDMKDV-------------------- 992 (1095)
Q Consensus 941 -------~~~~~Aai~IQs~~Rg~laRr~~~-l~~~~~~~~~~~~~k~k~~~k~~el~~~-------------------- 992 (1095)
.+.++|++.||++|||+++||.++ ++.+++......+...+++.++.+++..
T Consensus 877 ~l~R~~y~~~~~aai~iQs~~R~~laRr~~~~Lk~ear~~~~l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~ 956 (1080)
T 2dfs_A 877 WLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEI 956 (1080)
T ss_dssp THHHHHTTTTHHHHHHHHHHHHHHHHHHHTTTC-----------------------------------------CHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 334689999999999999999999 8877765554444444444444443110
Q ss_pred -cHHHHHhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001346 993 -PQEQVQALPTAL---AELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQVSFTCFY 1068 (1095)
Q Consensus 993 -~~e~~~~l~~~l---~elq~~~~eae~~l~~leeE~~~Lkeel~~~e~~~~e~e~k~~~~ee~~~k~~~~Lq~~l~~~k 1068 (1095)
..++..+|+.++ +.++.+..++++++.++++|++.|+++++...++..++|.+.+.++++++..+..|+.+....+
T Consensus 957 ~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~ 1036 (1080)
T 2dfs_A 957 TYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLK 1036 (1080)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 012233333222 2233334444566677777777777777777777777777766666666655555555544444
Q ss_pred hh
Q 001346 1069 TD 1070 (1095)
Q Consensus 1069 ks 1070 (1095)
.+
T Consensus 1037 qq 1038 (1080)
T 2dfs_A 1037 TE 1038 (1080)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 13
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=99.01 E-value=4.4e-10 Score=94.73 Aligned_cols=52 Identities=31% Similarity=0.471 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh-hh
Q 001346 882 VLQAIIRLQKCFRGYQARSRFRELCNGVITLQSFARGENTRRRHASLGKS-CS 933 (1095)
Q Consensus 882 ~l~aai~IQa~~Rg~~aRr~y~~lr~aai~IQs~~Rg~~aRr~y~~lr~~-AA 933 (1095)
...+|+.||++||||++|+.|..++.+++.||++|||+.+|+.|..+++. ||
T Consensus 4 ~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~~r~~~aA 56 (58)
T 2ix7_C 4 LRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKFLRRTKAA 56 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 34678999999999999999999999999999999999999999998876 44
No 14
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.70 E-value=2.7e-08 Score=80.46 Aligned_cols=46 Identities=26% Similarity=0.263 Sum_probs=29.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHhhhHHHHHHHHHHHHHHHHHHH
Q 001346 905 LCNGVITLQSFARGENTRRRHASLGKSCSAVVPEIRDEQLREIICLQSAIRGWLVRKQL 963 (1095)
Q Consensus 905 lr~aai~IQs~~Rg~~aRr~y~~lr~~AA~~IQ~~~~~~~~Aai~IQs~~Rg~laRr~~ 963 (1095)
++.+++.||++|||+++|+.|..+++. +|+++||+.||||++|+.|
T Consensus 2 ~r~a~i~iQ~~~Rg~l~R~~~~~~~~~-------------~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 2 ISQAIKYLQNNIKGFIIRQRVNDEMKV-------------NCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHhHHHHHhh
Confidence 345666666666666666666655442 4667777777777777654
No 15
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=98.68 E-value=4.1e-08 Score=82.63 Aligned_cols=52 Identities=29% Similarity=0.382 Sum_probs=45.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHhhhHHHHHHHHHHHHHHHHHHHH-HHHhhh
Q 001346 904 ELCNGVITLQSFARGENTRRRHASLGKSCSAVVPEIRDEQLREIICLQSAIRGWLVRKQLK-MHKLKQ 970 (1095)
Q Consensus 904 ~lr~aai~IQs~~Rg~~aRr~y~~lr~~AA~~IQ~~~~~~~~Aai~IQs~~Rg~laRr~~~-l~~~~~ 970 (1095)
++..+++.||++|||+.+|+.|..++ .|++.||++|||+++|+.+. ++...+
T Consensus 3 ~~~~aai~IQ~~~Rg~~~Rk~~~~~r---------------~aai~IQ~~~Rg~~aR~~~~~~r~~~a 55 (58)
T 2ix7_C 3 KLRAACIRIQKTIRGWLLRKRYLCMQ---------------RAAITVQRYVRGYQARCYAKFLRRTKA 55 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 35678999999999999999999876 48999999999999999999 766543
No 16
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.61 E-value=3.7e-08 Score=79.58 Aligned_cols=42 Identities=31% Similarity=0.377 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhh--HHHHHHHHHHHHHHHHHH
Q 001346 884 QAIIRLQKCFRGYQARSRFRELCN--GVITLQSFARGENTRRRH 925 (1095)
Q Consensus 884 ~aai~IQa~~Rg~~aRr~y~~lr~--aai~IQs~~Rg~~aRr~y 925 (1095)
.+++.||++|||+++|+.|..++. +++.||++|||+.+|+.|
T Consensus 4 ~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 4 QAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 578999999999999999999988 999999999999999987
No 17
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.56 E-value=4.5e-07 Score=118.86 Aligned_cols=56 Identities=21% Similarity=0.351 Sum_probs=46.6
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHhhhHHHHHHHHHHHHHHHHHHHH
Q 001346 897 QARSRFRELCNGVITLQSFARGENTRRRHASLGKSCSAVVPEIRDEQLREIICLQSAIRGWLVRKQLK 964 (1095)
Q Consensus 897 ~aRr~y~~lr~aai~IQs~~Rg~~aRr~y~~lr~~AA~~IQ~~~~~~~~Aai~IQs~~Rg~laRr~~~ 964 (1095)
+...+-..+...++.||++|||+++|++|.+++.+ +.|+++||+.||+|++||.+.
T Consensus 783 LE~~r~~~l~~~~~~iQ~~~Rg~l~R~~~~k~~~~------------~~a~~~iQ~~~r~~~~~k~~~ 838 (1184)
T 1i84_S 783 LEEERDLKITDVIIAFQAQCRGYLARKAFAKRQQQ------------LESIFCIQYNVRSFMNVXHWP 838 (1184)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHhhhH
Confidence 34444556667899999999999999999988753 578999999999999998765
No 18
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=97.32 E-value=0.00037 Score=59.57 Aligned_cols=47 Identities=23% Similarity=0.333 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHhhhHHHHHHHHHHHHHHHHHHHH
Q 001346 906 CNGVITLQSFARGENTRRRHASLGKSCSAVVPEIRDEQLREIICLQSAIRGWLVRKQLK 964 (1095)
Q Consensus 906 r~aai~IQs~~Rg~~aRr~y~~lr~~AA~~IQ~~~~~~~~Aai~IQs~~Rg~laRr~~~ 964 (1095)
...++.+|+.+||+++|+.|..+..+ +.|+.+||..+|+|+++|.+.
T Consensus 6 ~~i~t~~Qa~~RG~l~R~~~~k~~~~------------~~A~~iIQrn~R~~~~l~~w~ 52 (64)
T 1wdc_A 6 SKIISMFQAHIRGYLIRKAYKKLQDQ------------RIGLSVIQRNIRKWLVLRNWQ 52 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHhhcCCh
Confidence 34566666666666666666665442 346667777777777776655
No 19
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=97.28 E-value=0.0003 Score=60.01 Aligned_cols=47 Identities=23% Similarity=0.181 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHhhhHHHHHHHHHHHHHHHHHHHH
Q 001346 906 CNGVITLQSFARGENTRRRHASLGKSCSAVVPEIRDEQLREIICLQSAIRGWLVRKQLK 964 (1095)
Q Consensus 906 r~aai~IQs~~Rg~~aRr~y~~lr~~AA~~IQ~~~~~~~~Aai~IQs~~Rg~laRr~~~ 964 (1095)
...++.+|+.+||+++|+.|..+..+ +.|+.+||..+|+|+++|.+.
T Consensus 4 ~~i~t~~Qa~~RG~l~R~~~~k~~~~------------~~A~~iIQrn~R~~~~lr~w~ 50 (63)
T 2bl0_A 4 GEIVKVVQAAARGWVERKHFRQAREK------------SVSARIIQDNIRAYLEFKNWA 50 (63)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHhhccCh
Confidence 34567777777777777777776553 456778888888888877655
No 20
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=97.20 E-value=0.00036 Score=87.56 Aligned_cols=59 Identities=22% Similarity=0.274 Sum_probs=48.7
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHhhhHHHHHHHHHHHHHHHHHHHH-HHHh
Q 001346 898 ARSRFRELCNGVITLQSFARGENTRRRHASLGKSCSAVVPEIRDEQLREIICLQSAIRGWLVRKQLK-MHKL 968 (1095)
Q Consensus 898 aRr~y~~lr~aai~IQs~~Rg~~aRr~y~~lr~~AA~~IQ~~~~~~~~Aai~IQs~~Rg~laRr~~~-l~~~ 968 (1095)
...+-..+...++.||++|||+++|++|.+++.+ +.|+++||+.||+|++||.|. ++..
T Consensus 771 E~~r~~~l~~~~~~iQa~~Rg~l~R~~~~k~~~~------------r~a~~~IQ~~~R~~~~~r~~~w~~l~ 830 (837)
T 1kk8_A 771 EEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQ------------RIGLSVIQRNIRKWLVLRNWQWWKLY 830 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHcchHHHHHH
Confidence 3344455667899999999999999999988763 578999999999999999887 5544
No 21
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=97.19 E-value=0.00037 Score=59.59 Aligned_cols=47 Identities=26% Similarity=0.280 Sum_probs=40.2
Q ss_pred hHHH-HHHHHHHHHhhhhhhhhhhhh---hhHHHHHHHHHHHHHHHHHHHH
Q 001346 881 QVLQ-AIIRLQKCFRGYQARSRFREL---CNGVITLQSFARGENTRRRHAS 927 (1095)
Q Consensus 881 ~~l~-aai~IQa~~Rg~~aRr~y~~l---r~aai~IQs~~Rg~~aRr~y~~ 927 (1095)
..+. .++.||+.+|||++|+.|.++ +.|+..||+.+|++..++.+.-
T Consensus 3 ~~l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~w~W 53 (64)
T 1wdc_A 3 ERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQW 53 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChH
Confidence 3443 568999999999999999999 7788899999999999886644
No 22
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=96.99 E-value=0.00053 Score=58.42 Aligned_cols=44 Identities=20% Similarity=0.219 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhhhhhhhhhhhh---hhHHHHHHHHHHHHHHHHHHHH
Q 001346 884 QAIIRLQKCFRGYQARSRFREL---CNGVITLQSFARGENTRRRHAS 927 (1095)
Q Consensus 884 ~aai~IQa~~Rg~~aRr~y~~l---r~aai~IQs~~Rg~~aRr~y~~ 927 (1095)
..++.||+.+|||++|+.|.++ +.|+..||+.+|++..++.+.-
T Consensus 5 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~w~W 51 (63)
T 2bl0_A 5 EIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKNWAW 51 (63)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChH
Confidence 3467999999999999999999 7788899999999999876543
No 23
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=96.94 E-value=0.0035 Score=61.85 Aligned_cols=53 Identities=19% Similarity=0.305 Sum_probs=34.7
Q ss_pred HHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHhhhHHHHHHHHHHHHHHHHHHHH
Q 001346 891 KCFRGYQARSRFRELCNGVITLQSFARGENTRRRHASLGKSCSAVVPEIRDEQLREIICLQSAIRGWLVRKQLK 964 (1095)
Q Consensus 891 a~~Rg~~aRr~y~~lr~aai~IQs~~Rg~~aRr~y~~lr~~AA~~IQ~~~~~~~~Aai~IQs~~Rg~laRr~~~ 964 (1095)
+.+..|+.|.++++...+++.+=..=.-. .| ...++++||+.+|||++||.++
T Consensus 13 ~kV~~WLi~sRWrK~q~~~lsvIKLknKI----~y-----------------R~~~~i~iQktvR~~L~rkkhk 65 (148)
T 3gn4_A 13 KRVNHWLICSRWKKVQWCSLSVIKLKNKI----KY-----------------RAEACIKMQKTIRMWLCKRRHK 65 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH-----------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH-----------------HHHHHHHHHHHHHHHHHHHhhh
Confidence 44556777777777766554322211111 11 1368999999999999999998
No 24
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.05 E-value=0.01 Score=59.33 Aligned_cols=32 Identities=22% Similarity=0.316 Sum_probs=26.9
Q ss_pred hhCCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 288 MGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 288 ~~~~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
+..+....|+|+|++|+|||..++.+.+.+..
T Consensus 38 l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 38 LQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp HTSSSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HhcCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34466789999999999999999999887754
No 25
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.61 E-value=0.035 Score=55.37 Aligned_cols=64 Identities=14% Similarity=0.161 Sum_probs=39.5
Q ss_pred CCCCChHHHHHHcccCCCC-CchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 255 VPIYGNKFITAYRQKVMDS-PHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 255 l~~Y~~~~~~~y~~~~~~~-PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
+.-|..+..+.|+.....+ ..--... ......+.......|+|+|++|+|||+.++.+.+.+..
T Consensus 5 l~~~~~~l~~~~~~~~~~~~~g~~~~~-~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 5 LEKYSRDLTALARAGKLDPVIGRDTEI-RRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp TTTTEEEHHHHHHTTCSCCCCSCHHHH-HHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccccchhhcchHHH-HHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 4445555666666544332 0000111 22233334466789999999999999999999888764
No 26
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.48 E-value=0.038 Score=57.05 Aligned_cols=33 Identities=27% Similarity=0.364 Sum_probs=23.7
Q ss_pred HHHhhCCCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 285 NEMMGDGVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 285 ~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
..|+.......|+|.|.||||||+.+|.+...+
T Consensus 21 ~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 21 QSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 345555677899999999999999999997765
No 27
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.39 E-value=0.056 Score=55.78 Aligned_cols=30 Identities=33% Similarity=0.260 Sum_probs=26.7
Q ss_pred hCCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 289 GDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 289 ~~~~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
.......|+|.|.||||||+.++.+...|.
T Consensus 21 ~~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 21 LDQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp HTSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345678999999999999999999998886
No 28
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.37 E-value=0.039 Score=57.45 Aligned_cols=30 Identities=27% Similarity=0.336 Sum_probs=26.8
Q ss_pred CCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 290 DGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 290 ~~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
.+..+.|.|.|.||||||+.++.+...+..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 356789999999999999999999998874
No 29
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.29 E-value=0.036 Score=57.39 Aligned_cols=22 Identities=41% Similarity=0.530 Sum_probs=19.7
Q ss_pred EEEcCCCCCChhhHHHHHHHHH
Q 001346 296 IIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 296 IiisGESGAGKTe~~K~il~yL 317 (1095)
|||||.||||||+.++.+++-+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 9999999999999999887654
No 30
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.73 E-value=0.047 Score=55.53 Aligned_cols=25 Identities=12% Similarity=0.367 Sum_probs=22.2
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
..-|+|+|.||||||+.++.++..+
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4679999999999999999988764
No 31
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.73 E-value=0.085 Score=53.25 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=25.3
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
..+.|+|.|++|+|||+.++.+...+..
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 64 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYE 64 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999998873
No 32
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=92.52 E-value=0.1 Score=53.59 Aligned_cols=28 Identities=25% Similarity=0.237 Sum_probs=24.8
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
++.|+|.|++|+|||+.++.+..++...
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3899999999999999999998887643
No 33
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.31 E-value=0.12 Score=53.81 Aligned_cols=37 Identities=19% Similarity=0.139 Sum_probs=29.9
Q ss_pred HHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 283 AYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 283 Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
....+......+.|+|+|++|+|||+.++.+.+.+..
T Consensus 42 ~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 42 ALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp HHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3444455557899999999999999999999887764
No 34
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.26 E-value=0.058 Score=55.86 Aligned_cols=26 Identities=35% Similarity=0.484 Sum_probs=22.7
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
.+.|+|.|.||||||+..+.++..+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 46799999999999999999988764
No 35
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=92.20 E-value=0.06 Score=54.01 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=21.7
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
+..|+|+|-||||||+.++.+-+.|
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3579999999999999999887654
No 36
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.18 E-value=0.048 Score=55.67 Aligned_cols=25 Identities=36% Similarity=0.496 Sum_probs=22.0
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 294 QSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
..|+|+|.||||||+.++.++..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4589999999999999999987764
No 37
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=92.14 E-value=0.065 Score=54.38 Aligned_cols=29 Identities=28% Similarity=0.421 Sum_probs=22.8
Q ss_pred HhhCCCceEEEEcCCCCCChhhHHHHHHH
Q 001346 287 MMGDGVNQSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 287 m~~~~~~QsIiisGESGAGKTe~~K~il~ 315 (1095)
|..-.....|+|.|.||||||+.+|.+..
T Consensus 3 m~~i~~g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 3 MTDDLGGNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp ---CCTTEEEEEEECTTSCHHHHHHHHHT
T ss_pred ccCCCCCeEEEEECCCCCCHHHHHHHHHh
Confidence 45556678999999999999999998854
No 38
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.97 E-value=0.14 Score=55.72 Aligned_cols=37 Identities=22% Similarity=0.373 Sum_probs=30.0
Q ss_pred HHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 283 AYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 283 Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
+++.+. -...+.|+|+|.||||||++.+.++.++...
T Consensus 16 vl~~i~-i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~ 52 (261)
T 2eyu_A 16 KVLELC-HRKMGLILVTGPTGSGKSTTIASMIDYINQT 52 (261)
T ss_dssp HHHHGG-GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH
T ss_pred HHHHHh-hCCCCEEEEECCCCccHHHHHHHHHHhCCCC
Confidence 344444 4677899999999999999999999987654
No 39
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=91.95 E-value=0.073 Score=37.38 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHhhhhhhhh
Q 001346 881 QVLQAIIRLQKCFRGYQARSR 901 (1095)
Q Consensus 881 ~~l~aai~IQa~~Rg~~aRr~ 901 (1095)
+.-.+|+.||++||+|+.|+.
T Consensus 4 ~Ee~aA~vIQrA~R~yl~~~~ 24 (27)
T 2kxw_B 4 QEEVSAIVIQRAYRRYLLKQK 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 334578899999999988764
No 40
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=91.68 E-value=0.09 Score=38.09 Aligned_cols=22 Identities=14% Similarity=0.226 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhhh
Q 001346 882 VLQAIIRLQKCFRGYQARSRFR 903 (1095)
Q Consensus 882 ~l~aai~IQa~~Rg~~aRr~y~ 903 (1095)
.--+|+.||++||+|+.|+...
T Consensus 5 Ee~aA~vIQrA~R~yl~rr~~~ 26 (31)
T 2l53_B 5 EEVSAMVIQRAFRRHLLQRSLK 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3457889999999999887643
No 41
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.66 E-value=0.067 Score=55.40 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
....-|+|+|.||||||+.++.+.+.+
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 356789999999999999999987765
No 42
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.54 E-value=0.07 Score=55.59 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
....-|+|+|.||||||+.++.++..+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 456789999999999999999887654
No 43
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=91.44 E-value=0.086 Score=54.05 Aligned_cols=26 Identities=38% Similarity=0.442 Sum_probs=22.2
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
..+.|.|.|.||||||+.++.+...+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 35789999999999999999887654
No 44
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=91.40 E-value=0.097 Score=51.86 Aligned_cols=24 Identities=25% Similarity=0.167 Sum_probs=21.1
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHH
Q 001346 295 SIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il~yLa 318 (1095)
-|+|+|-||||||+.++.+.+.|-
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999877653
No 45
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=91.34 E-value=0.13 Score=50.86 Aligned_cols=28 Identities=29% Similarity=0.274 Sum_probs=25.1
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
..+.++|.|++|+|||+.++.+..++..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6789999999999999999999887763
No 46
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=91.33 E-value=0.096 Score=53.93 Aligned_cols=24 Identities=29% Similarity=0.446 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHH
Q 001346 294 QSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~yL 317 (1095)
--|+|+|.||||||+.++.+.+.|
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999988775
No 47
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.26 E-value=0.11 Score=51.86 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=22.7
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
-|-|+|+|.+|||||+.++.+-+.|-
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 38999999999999999999877653
No 48
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=91.18 E-value=0.11 Score=53.47 Aligned_cols=26 Identities=35% Similarity=0.382 Sum_probs=23.3
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
....|+|.|.||||||+.++.+.+.|
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999998876
No 49
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=91.13 E-value=0.1 Score=37.76 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 001346 944 LREIICLQSAIRGWLVRKQLK 964 (1095)
Q Consensus 944 ~~Aai~IQs~~Rg~laRr~~~ 964 (1095)
..+|++||.+||+++.||.++
T Consensus 6 e~aA~vIQrA~R~yl~rr~~~ 26 (31)
T 2l53_B 6 EVSAMVIQRAFRRHLLQRSLK 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 468999999999999987643
No 50
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=91.13 E-value=0.17 Score=52.33 Aligned_cols=32 Identities=31% Similarity=0.183 Sum_probs=27.3
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHHhcC
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yLa~~~~ 322 (1095)
.....|.|+|.||||||+.++.+...|...++
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~ 51 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGI 51 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCC
Confidence 45689999999999999999999998865443
No 51
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=90.91 E-value=0.14 Score=51.13 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=22.3
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
....|+|.|.||||||+.++.+...+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 45789999999999999999887654
No 52
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=90.87 E-value=0.11 Score=52.30 Aligned_cols=26 Identities=31% Similarity=0.663 Sum_probs=22.7
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
+.-|+|+|.+|||||+.++.+-+.|.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999887765
No 53
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=90.77 E-value=0.11 Score=54.08 Aligned_cols=27 Identities=22% Similarity=0.469 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.+.|.|+||||||+..|.++..+
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 456789999999999999999998765
No 54
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=90.74 E-value=0.093 Score=53.80 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=22.6
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
....|+|.|.||||||+.++.+..++
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 35689999999999999999987765
No 55
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=90.66 E-value=0.12 Score=53.30 Aligned_cols=27 Identities=30% Similarity=0.247 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
.....|.|.|.||||||+.++.+...+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998776
No 56
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.60 E-value=0.19 Score=52.23 Aligned_cols=31 Identities=23% Similarity=0.244 Sum_probs=26.7
Q ss_pred hhCCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 288 MGDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 288 ~~~~~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
........|+|.|.+|||||+.++.+.++|.
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3445678999999999999999999988886
No 57
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=90.53 E-value=0.13 Score=51.90 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=23.0
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
....|+|+|.||||||+.++.+-+.|
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999988776
No 58
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=90.48 E-value=0.16 Score=51.21 Aligned_cols=28 Identities=32% Similarity=0.461 Sum_probs=24.8
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
+...|+|+|.+|||||+.++.+..+|..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999888754
No 59
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.48 E-value=0.11 Score=54.87 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
.....|+|+|+||||||+..|.++..+
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 456799999999999999999987654
No 60
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=90.46 E-value=0.14 Score=35.99 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 001346 943 QLREIICLQSAIRGWLVRKQ 962 (1095)
Q Consensus 943 ~~~Aai~IQs~~Rg~laRr~ 962 (1095)
...||++||.+||+++.++.
T Consensus 5 Ee~aA~vIQrA~R~yl~~~~ 24 (27)
T 2kxw_B 5 EEVSAIVIQRAYRRYLLKQK 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 35789999999999998753
No 61
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.44 E-value=0.15 Score=51.99 Aligned_cols=28 Identities=32% Similarity=0.325 Sum_probs=25.2
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001346 294 QSIIISGESGAGKTETAKFAMQYLAALG 321 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~yLa~~~ 321 (1095)
..|+|+|.||||||+.++.++..|...+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g 34 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARG 34 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccC
Confidence 5799999999999999999999987654
No 62
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=90.35 E-value=0.26 Score=54.41 Aligned_cols=30 Identities=27% Similarity=0.280 Sum_probs=26.6
Q ss_pred CCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 290 DGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 290 ~~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
.++...|.|+|.||||||+.++.+..+|..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 456789999999999999999999988864
No 63
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=90.26 E-value=0.15 Score=53.26 Aligned_cols=27 Identities=15% Similarity=0.353 Sum_probs=23.7
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
....|+|+|.||||||+.++.+++.+-
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 467899999999999999999987754
No 64
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=90.21 E-value=0.17 Score=55.80 Aligned_cols=27 Identities=19% Similarity=0.356 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
.....|||+|.||||||+.++.+.+.+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999987754
No 65
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=90.08 E-value=0.16 Score=51.45 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=22.8
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...-|+|.|.+|||||+.++.+.++|
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 35689999999999999999988776
No 66
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.06 E-value=0.22 Score=57.87 Aligned_cols=36 Identities=22% Similarity=0.452 Sum_probs=29.6
Q ss_pred HHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 282 TAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 282 ~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
.++..++ ......|+|+|++|||||++.+.++.++.
T Consensus 157 ~~L~~l~-~~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 157 DNFRRLI-KRPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp HHHHHHH-TSSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred HHHHHHH-HhcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 3566664 36678899999999999999999988875
No 67
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=89.84 E-value=0.16 Score=51.89 Aligned_cols=23 Identities=48% Similarity=0.674 Sum_probs=21.0
Q ss_pred EEEEcCCCCCChhhHHHHHHHHH
Q 001346 295 SIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il~yL 317 (1095)
.|.|.|++|||||+..|.++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998877
No 68
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=89.81 E-value=0.25 Score=50.35 Aligned_cols=35 Identities=26% Similarity=0.264 Sum_probs=26.8
Q ss_pred HHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 284 YNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 284 y~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
....+..+....++|+|++|+|||+.++.+.+.+.
T Consensus 29 l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 29 LKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp HHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 33344444445599999999999999999988774
No 69
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=89.76 E-value=0.14 Score=51.68 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=22.8
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 295 SIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
-|+|.|-+|||||+.++.+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5999999999999999999998863
No 70
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=89.73 E-value=0.12 Score=54.31 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=23.1
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
..+.+.|.|+||||||+..+.++..+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 46789999999999999999998765
No 71
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=89.71 E-value=0.32 Score=50.06 Aligned_cols=30 Identities=27% Similarity=0.476 Sum_probs=25.1
Q ss_pred CCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 290 DGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 290 ~~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
.+.+..++|+|++|+|||+.++.+.+.+..
T Consensus 42 ~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 42 GRIHHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp TCCCSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 444568999999999999999999877653
No 72
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=89.67 E-value=0.18 Score=50.52 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=25.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.+.|.|++|||||+..|.+...+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 567899999999999999999999887
No 73
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=89.65 E-value=0.23 Score=56.42 Aligned_cols=37 Identities=19% Similarity=0.427 Sum_probs=29.1
Q ss_pred HHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 283 AYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 283 Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
.+..+.. .....|+|+|.||||||++.+.++.++...
T Consensus 114 ~l~~l~~-~~~g~i~I~GptGSGKTTlL~~l~g~~~~~ 150 (356)
T 3jvv_A 114 VFKRVSD-VPRGLVLVTGPTGSGKSTTLAAMLDYLNNT 150 (356)
T ss_dssp HHHHHHH-CSSEEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHh-CCCCEEEEECCCCCCHHHHHHHHHhcccCC
Confidence 3445543 344599999999999999999999998764
No 74
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=89.52 E-value=0.22 Score=50.67 Aligned_cols=28 Identities=18% Similarity=0.093 Sum_probs=24.9
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001346 294 QSIIISGESGAGKTETAKFAMQYLAALG 321 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~yLa~~~ 321 (1095)
..|.|+|.||||||+.+..++.+|...+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g 32 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREG 32 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcC
Confidence 4689999999999999999999998654
No 75
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=89.51 E-value=0.26 Score=55.46 Aligned_cols=34 Identities=26% Similarity=0.259 Sum_probs=29.4
Q ss_pred hCCCceEEEEcCCCCCChhhHHHHHHHHHHHhcC
Q 001346 289 GDGVNQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1095)
Q Consensus 289 ~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~~ 322 (1095)
...+...|.|.|+||||||++++.+..++...++
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g 158 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGF 158 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 3467899999999999999999999999876554
No 76
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=89.50 E-value=0.27 Score=59.14 Aligned_cols=31 Identities=29% Similarity=0.430 Sum_probs=26.6
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yLa~~~ 321 (1095)
.+.+.|+|.|.||||||+.++.+...|...+
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~ 397 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMG 397 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTC
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccC
Confidence 4568999999999999999999998886443
No 77
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=89.42 E-value=0.15 Score=50.31 Aligned_cols=19 Identities=47% Similarity=0.756 Sum_probs=17.9
Q ss_pred EEEEcCCCCCChhhHHHHH
Q 001346 295 SIIISGESGAGKTETAKFA 313 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~i 313 (1095)
-|+|+|.+|||||+.++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999988
No 78
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.36 E-value=0.09 Score=53.53 Aligned_cols=27 Identities=30% Similarity=0.266 Sum_probs=24.8
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 294 QSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
+.|.|.|+||||||+.++.++.++...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 578999999999999999999999865
No 79
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=89.34 E-value=0.2 Score=50.54 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=22.2
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...|+|+|.+|||||+.++.+-+.|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999997766
No 80
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=89.33 E-value=0.16 Score=51.84 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCCChhhHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~ 315 (1095)
....|+|+|+||||||+++-.+++
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999988877
No 81
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=89.25 E-value=0.16 Score=50.56 Aligned_cols=24 Identities=33% Similarity=0.518 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHH
Q 001346 294 QSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~yL 317 (1095)
..|+|.|.||||||+.++.+-..|
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999886654
No 82
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=89.18 E-value=0.27 Score=54.55 Aligned_cols=45 Identities=22% Similarity=0.190 Sum_probs=32.3
Q ss_pred CchhHHHHHHHHHHhhCC--CceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 274 PHVYAIADTAYNEMMGDG--VNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 274 PHiyavA~~Ay~~m~~~~--~~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
.|..+. .+.+.+.... ...+++|.|++|+|||+.++.+.+++...
T Consensus 18 ~~~~a~--~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 18 GNRLAY--EVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp TTHHHH--HHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred cHHHHH--HHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 454433 3344444433 46799999999999999999999888653
No 83
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=89.14 E-value=0.27 Score=49.73 Aligned_cols=30 Identities=27% Similarity=0.339 Sum_probs=26.1
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yLa~~~ 321 (1095)
....|+|.|.+|||||+.++.+..+|...+
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~ 41 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEG 41 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 467899999999999999999999887543
No 84
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=89.12 E-value=0.2 Score=50.84 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCChhhHHHHHHH
Q 001346 294 QSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~ 315 (1095)
+.|+|.|.||||||+.++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999865
No 85
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=89.03 E-value=0.22 Score=50.48 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=22.8
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 296 IIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 296 IiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
|+|.|-+|||||+.++.+.++|...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~ 27 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKR 27 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 8999999999999999999988654
No 86
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=89.01 E-value=0.21 Score=53.18 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=24.1
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
+...|+|.|.+|||||+.+|.+.+.|-
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 367999999999999999999998773
No 87
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=88.93 E-value=0.24 Score=49.91 Aligned_cols=26 Identities=42% Similarity=0.502 Sum_probs=22.9
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
+...|+|.|.+|||||+.++.+.+.|
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999998766
No 88
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=88.85 E-value=0.2 Score=50.97 Aligned_cols=24 Identities=33% Similarity=0.392 Sum_probs=21.4
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHH
Q 001346 295 SIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il~yLa 318 (1095)
-|+|.|.+|||||+.++.+.++|-
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999988763
No 89
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=88.79 E-value=0.094 Score=54.14 Aligned_cols=25 Identities=32% Similarity=0.318 Sum_probs=22.6
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 295 SIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
-|+|.|.||||||+.++.+.++|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4899999999999999999988864
No 90
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=88.77 E-value=0.26 Score=49.64 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=19.1
Q ss_pred CceEEEEcCCCCCChhhHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKF 312 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~ 312 (1095)
....+.|.|+||||||+.+|.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 457899999999999999996
No 91
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=88.77 E-value=0.21 Score=49.60 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.8
Q ss_pred EEEEcCCCCCChhhHHHHHHHHH
Q 001346 295 SIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il~yL 317 (1095)
.|+|+|.+|||||+.++.+-+.|
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 49999999999999999987765
No 92
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=88.67 E-value=0.21 Score=49.35 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=20.9
Q ss_pred EEEEcCCCCCChhhHHHHHHHHH
Q 001346 295 SIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il~yL 317 (1095)
.|+|+|.+|||||+.++.+-+.|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 49999999999999999998866
No 93
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=88.64 E-value=0.25 Score=55.14 Aligned_cols=30 Identities=30% Similarity=0.319 Sum_probs=25.9
Q ss_pred CCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 290 DGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 290 ~~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
-.....|.|.|.||||||+.++.|...+..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 356789999999999999999999887754
No 94
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=88.55 E-value=0.25 Score=56.51 Aligned_cols=31 Identities=23% Similarity=0.434 Sum_probs=27.1
Q ss_pred CCCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 290 DGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 290 ~~~~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
-...+.|+|+|.||||||++.+.++.++...
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~ 163 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQT 163 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 3567899999999999999999999988754
No 95
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=88.53 E-value=0.23 Score=51.70 Aligned_cols=25 Identities=40% Similarity=0.461 Sum_probs=22.3
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...|.|.|.||||||+.++.+...+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998765
No 96
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=88.49 E-value=0.35 Score=53.60 Aligned_cols=28 Identities=29% Similarity=0.394 Sum_probs=25.1
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
.....|-|+|.||||||+.++.+...+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5668999999999999999999988775
No 97
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=88.44 E-value=0.43 Score=51.48 Aligned_cols=28 Identities=21% Similarity=0.177 Sum_probs=24.3
Q ss_pred CCCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 290 DGVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 290 ~~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
.....+|+|.|++|+|||..++.+.+.+
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 5567899999999999999999887763
No 98
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=88.34 E-value=0.33 Score=53.88 Aligned_cols=31 Identities=29% Similarity=0.324 Sum_probs=26.9
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHhcC
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yLa~~~~ 322 (1095)
..+.|.|.|++|||||++++.+..++..-+|
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g 129 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGT 129 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 5689999999999999999999988876444
No 99
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=88.25 E-value=0.24 Score=49.91 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=21.1
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHH
Q 001346 295 SIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il~yLa 318 (1095)
.|+|+|.+|||||+.++.+-+.|-
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 499999999999999999987653
No 100
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=88.16 E-value=0.31 Score=54.23 Aligned_cols=31 Identities=29% Similarity=0.467 Sum_probs=26.9
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHhcC
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yLa~~~~ 322 (1095)
..+.|.|.|.||||||++++.+..++..-++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g 131 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGK 131 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCC
Confidence 5689999999999999999999988875443
No 101
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.12 E-value=3.5 Score=49.53 Aligned_cols=79 Identities=8% Similarity=0.057 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhhhccc
Q 001346 1000 LPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEM---WQKQMASLQVSFTCFYTDIIMESL 1076 (1095)
Q Consensus 1000 l~~~l~elq~~~~eae~~l~~leeE~~~Lkeel~~~e~~~~e~e~k~~~~ee~---~~k~~~~Lq~~l~~~kksla~~~~ 1076 (1095)
+.+++.+++.+.+..+..+.+.+++.++.+++++.++++..++|.+.+++++. ++++++.+..++.+....+..+++
T Consensus 507 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~ 586 (597)
T 3oja_B 507 LNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPD 586 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 33344444444444444444444444444444444444444444433333222 333444455555555555555554
Q ss_pred cc
Q 001346 1077 LG 1078 (1095)
Q Consensus 1077 ~~ 1078 (1095)
++
T Consensus 587 ~~ 588 (597)
T 3oja_B 587 TR 588 (597)
T ss_dssp --
T ss_pred cc
Confidence 43
No 102
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=88.06 E-value=0.2 Score=52.85 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=16.7
Q ss_pred CceEEEEcCCCCCChhhHHHHHH-HHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAM-QYL 317 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il-~yL 317 (1095)
..+.|.|.|.||||||+.++.+. ..+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 35789999999999999999987 654
No 103
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.04 E-value=0.15 Score=53.94 Aligned_cols=37 Identities=27% Similarity=0.376 Sum_probs=22.0
Q ss_pred HHHHHHHHhhC-----CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 280 ADTAYNEMMGD-----GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 280 A~~Ay~~m~~~-----~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
|+.|...|..+ .+...|.|.|.+|||||+.++.+..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 2 AEAASCARKGTKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp ----------CCBTTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred cccccchhhCCccCCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34444445433 34689999999999999988877554
No 104
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=87.98 E-value=0.25 Score=49.44 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=20.7
Q ss_pred EEEEcCCCCCChhhHHHHHHHHH
Q 001346 295 SIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il~yL 317 (1095)
.|+|.|.+|||||+.++.+-+.|
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 49999999999999999997765
No 105
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=87.75 E-value=0.28 Score=48.79 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCChhhHHHHHHH
Q 001346 294 QSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~ 315 (1095)
..|+|.|-+|||||+.++.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5699999999999999998876
No 106
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=87.74 E-value=0.47 Score=53.35 Aligned_cols=37 Identities=16% Similarity=0.217 Sum_probs=28.7
Q ss_pred HHHHHHhhCCCce--EEEEcCCCCCChhhHHHHHHHHHH
Q 001346 282 TAYNEMMGDGVNQ--SIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 282 ~Ay~~m~~~~~~Q--sIiisGESGAGKTe~~K~il~yLa 318 (1095)
.+.........+. +++|+|++|+|||+.++.+.+.+.
T Consensus 31 ~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 31 ILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp HHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 3444455556667 999999999999999998877654
No 107
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=87.69 E-value=0.27 Score=50.95 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=20.2
Q ss_pred EEEcCCCCCChhhHHHHHHHHH
Q 001346 296 IIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 296 IiisGESGAGKTe~~K~il~yL 317 (1095)
|+|+|.+|||||+.++.+.+.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999997765
No 108
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=87.68 E-value=0.21 Score=48.74 Aligned_cols=24 Identities=17% Similarity=0.448 Sum_probs=20.4
Q ss_pred CCceEEEEcCCCCCChhhHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAM 314 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il 314 (1095)
..+..|+|.||+|+|||..++.+-
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~ 45 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLH 45 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999988763
No 109
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=87.65 E-value=0.24 Score=49.91 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=22.3
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
..-|+|+|.+|||||+.++.+.+.|
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998876
No 110
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=87.56 E-value=0.43 Score=53.68 Aligned_cols=40 Identities=23% Similarity=0.321 Sum_probs=32.3
Q ss_pred HHHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 281 DTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 281 ~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
..+...+...+...+|+|+|++|+|||..++.+.+.+...
T Consensus 33 ~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~ 72 (384)
T 2qby_B 33 AIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEV 72 (384)
T ss_dssp HHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3455566667778899999999999999999999887543
No 111
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=87.38 E-value=0.35 Score=51.53 Aligned_cols=27 Identities=26% Similarity=0.266 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
.....|-|.|.+|||||+.+|.+...|
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999988766
No 112
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=87.38 E-value=0.29 Score=49.36 Aligned_cols=25 Identities=40% Similarity=0.539 Sum_probs=22.2
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 295 SIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
-|+|+|-+|||||+.++.+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4899999999999999999888754
No 113
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=87.33 E-value=0.56 Score=53.73 Aligned_cols=45 Identities=16% Similarity=0.129 Sum_probs=36.1
Q ss_pred CCchhHHHHHHHHHHhh-CCCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 273 SPHVYAIADTAYNEMMG-DGVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 273 ~PHiyavA~~Ay~~m~~-~~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
-|++......+++.+.. -...+.|+|.|.+|||||+.++.+...+
T Consensus 148 ~~~~~~~~~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 148 LPKMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp STTHHHHHHHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 36777777778888753 4567899999999999999999998753
No 114
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=87.30 E-value=0.29 Score=50.10 Aligned_cols=26 Identities=23% Similarity=0.443 Sum_probs=22.5
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
..-|+|.|-+|||||+.++.+.+.|-
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 45799999999999999999877664
No 115
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=87.20 E-value=0.65 Score=49.54 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=23.7
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...=-|+|+|.+|||||+.++.+.+.+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 456689999999999999999998766
No 116
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=87.14 E-value=0.41 Score=49.54 Aligned_cols=40 Identities=20% Similarity=0.256 Sum_probs=29.8
Q ss_pred HHHHHhhC--CCceEEEEcCCCCCChhhHHHHHHHHHHHhcC
Q 001346 283 AYNEMMGD--GVNQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1095)
Q Consensus 283 Ay~~m~~~--~~~QsIiisGESGAGKTe~~K~il~yLa~~~~ 322 (1095)
+...+... ...+.++|.|++|||||+.++.++..++..++
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~ 52 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGD 52 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCC
Confidence 34444432 35678999999999999999999977775443
No 117
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=87.10 E-value=0.4 Score=53.71 Aligned_cols=39 Identities=13% Similarity=0.079 Sum_probs=33.0
Q ss_pred HHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 282 TAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 282 ~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
.+.+..+..+.+-+|+|+|.+|+|||.+++.+++-|...
T Consensus 34 ~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~ 72 (318)
T 3te6_A 34 LPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITS 72 (318)
T ss_dssp HHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 445555677899999999999999999999999998643
No 118
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=87.10 E-value=0.29 Score=52.60 Aligned_cols=28 Identities=32% Similarity=0.438 Sum_probs=23.7
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
.....|.|.|.||||||+.+|.+.+.|-
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3456899999999999999999986653
No 119
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=87.05 E-value=0.58 Score=56.58 Aligned_cols=49 Identities=16% Similarity=0.204 Sum_probs=34.5
Q ss_pred CCCCchhH---HHHHHHHHHh--hCCCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 271 MDSPHVYA---IADTAYNEMM--GDGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 271 ~~~PHiya---vA~~Ay~~m~--~~~~~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
..+||-|. |+. ..+... ...+...|+|+|-||||||+.++.+-+.|...
T Consensus 370 ~~~p~w~~~~eVsr-~lRe~~~~~gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~ 423 (573)
T 1m8p_A 370 AHIPEWFSYPEVVK-ILRESNPPRATQGFTIFLTGYMNSGKDAIARALQVTLNQQ 423 (573)
T ss_dssp CCCCTTTSCHHHHH-HHHTTSCCTTTCCEEEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCcccccccccH-HHHHhcccccccceEEEeecCCCCCHHHHHHHHHHHhccc
Confidence 34555554 553 333333 34556789999999999999999998887753
No 120
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=87.02 E-value=0.37 Score=52.83 Aligned_cols=35 Identities=23% Similarity=0.333 Sum_probs=27.1
Q ss_pred HHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 284 YNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 284 y~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
...++..+....++|+|++|+|||+.++.+.+.+.
T Consensus 37 l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 37 LKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp HHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 33444445544699999999999999999988874
No 121
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=87.00 E-value=0.27 Score=49.96 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=23.1
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
..-|+|+|-+|||||+.++.+.++|-
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999988774
No 122
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=87.00 E-value=0.31 Score=49.82 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.8
Q ss_pred EEEEcCCCCCChhhHHHHHHHHH
Q 001346 295 SIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il~yL 317 (1095)
.|.|+|.+|||||+.++.+-+.|
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 69999999999999999987765
No 123
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=86.93 E-value=0.4 Score=52.15 Aligned_cols=27 Identities=30% Similarity=0.441 Sum_probs=23.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
..+.+|+|.|++|+|||+.++.+.+.+
T Consensus 48 ~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 48 VTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999887766
No 124
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=86.80 E-value=0.45 Score=54.14 Aligned_cols=31 Identities=29% Similarity=0.324 Sum_probs=26.8
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHhcC
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yLa~~~~ 322 (1095)
....|.|.|.+|||||++++.+..++..-++
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G 186 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGT 186 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCC
Confidence 4689999999999999999999988875443
No 125
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=86.76 E-value=0.39 Score=49.23 Aligned_cols=28 Identities=29% Similarity=0.419 Sum_probs=24.4
Q ss_pred CCCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 290 DGVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 290 ~~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+..|+|.|.+|||||+.++.+-++|
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456689999999999999999998876
No 126
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=86.67 E-value=0.3 Score=52.46 Aligned_cols=27 Identities=30% Similarity=0.484 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
..+..|+|.|.||||||+.++.+.+.|
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 456789999999999999998876543
No 127
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=86.64 E-value=0.29 Score=50.35 Aligned_cols=27 Identities=26% Similarity=0.525 Sum_probs=23.9
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
..-|+|+|-+|||||+.++.+.++|-.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 467999999999999999999888764
No 128
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=86.63 E-value=0.39 Score=48.33 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=22.0
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
+--|+|.|-+|||||+.++.+.+.|
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999988765
No 129
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=86.59 E-value=0.33 Score=49.10 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=23.0
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
+...|+|.|.+|||||+.++.+-+.|
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999998876
No 130
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=86.59 E-value=0.37 Score=51.94 Aligned_cols=28 Identities=29% Similarity=0.336 Sum_probs=24.4
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
..-|+|.|-+|||||+.++.+-++|...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~ 31 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKN 31 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhC
Confidence 3579999999999999999998887654
No 131
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=86.38 E-value=0.24 Score=49.62 Aligned_cols=25 Identities=40% Similarity=0.446 Sum_probs=17.3
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
..-|+|.|.+|||||+.++.+-+.|
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999886654
No 132
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=86.37 E-value=0.52 Score=56.67 Aligned_cols=50 Identities=18% Similarity=0.235 Sum_probs=34.7
Q ss_pred CCCCCchhH---HHHHHHHHHh-hCCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 270 VMDSPHVYA---IADTAYNEMM-GDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 270 ~~~~PHiya---vA~~Ay~~m~-~~~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
...+||-|. |+......+. +.+....|+++|-+|||||+.++.+-+.|..
T Consensus 345 g~~~p~~~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 345 GRKLPEWFTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp TCCCCTTTSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCccccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 334677766 5533333331 2344578999999999999999999888764
No 133
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=86.36 E-value=0.29 Score=50.81 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=20.0
Q ss_pred EEEcCCCCCChhhHHHHHHHHH
Q 001346 296 IIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 296 IiisGESGAGKTe~~K~il~yL 317 (1095)
|+|+|.+|||||+.++.+.+.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999987754
No 134
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=86.35 E-value=0.26 Score=51.73 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=22.3
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
+..-|+|.|-+|||||+.++.+.+.|
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34679999999999999999988765
No 135
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=86.34 E-value=0.39 Score=51.24 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=22.3
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
.+..|+|.|++|+|||+.++.+...+
T Consensus 44 ~~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 44 IPKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 45679999999999999999887654
No 136
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=86.33 E-value=0.38 Score=53.55 Aligned_cols=36 Identities=14% Similarity=0.214 Sum_probs=29.3
Q ss_pred HHHHHHhh-CCCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 282 TAYNEMMG-DGVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 282 ~Ay~~m~~-~~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
.+.+.+-. -...+.|.|.|+||||||+.++.|+.++
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34554433 3567999999999999999999999988
No 137
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=86.32 E-value=0.23 Score=51.27 Aligned_cols=26 Identities=35% Similarity=0.242 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
....-|.|+|.||||||+.++.+...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34578999999999999999887654
No 138
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=86.29 E-value=0.17 Score=57.71 Aligned_cols=28 Identities=36% Similarity=0.583 Sum_probs=24.1
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
..+.|+|+|+||||||+..+.++.++-.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 3578999999999999999999887643
No 139
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=86.24 E-value=0.35 Score=49.26 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
.+...|.|+|.+|||||+.++.+-+.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34578999999999999999988764
No 140
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=86.15 E-value=47 Score=47.77 Aligned_cols=54 Identities=20% Similarity=0.177 Sum_probs=30.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001346 995 EQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKS 1048 (1095)
Q Consensus 995 e~~~~l~~~l~elq~~~~eae~~l~~leeE~~~Lkeel~~~e~~~~e~e~k~~~ 1048 (1095)
++++++++++++.+.++.++++++.+++++++.|+++.+...++...++.+++.
T Consensus 2014 ~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~ 2067 (3245)
T 3vkg_A 2014 EEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSK 2067 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666666666666666666666665555554444444444443
No 141
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=86.13 E-value=0.53 Score=52.36 Aligned_cols=47 Identities=17% Similarity=0.185 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHhhC--------CCceEEEEcCCCCCChhhHHHHHHHHHHHhcC
Q 001346 276 VYAIADTAYNEMMGD--------GVNQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1095)
Q Consensus 276 iyavA~~Ay~~m~~~--------~~~QsIiisGESGAGKTe~~K~il~yLa~~~~ 322 (1095)
+..+.......++.. .....|.|.|.+|||||++++.+..+++..++
T Consensus 79 ~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~ 133 (306)
T 1vma_A 79 ALESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGK 133 (306)
T ss_dssp HHHHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCC
Confidence 555555555555432 34678999999999999999999999886543
No 142
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=86.12 E-value=0.28 Score=54.04 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
.--|.|+|.||||||+.++.+.+.|-
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34699999999999999999887665
No 143
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=86.09 E-value=0.41 Score=50.85 Aligned_cols=27 Identities=30% Similarity=0.330 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
..+..|+|.|++|+|||..++.+-+.+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999987765
No 144
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=86.09 E-value=0.51 Score=55.88 Aligned_cols=49 Identities=20% Similarity=0.335 Sum_probs=38.1
Q ss_pred CchhHHHHHHHHHHhhC---------CCceEEEEcCCCCCChhhHHHHHHHHHHHhcC
Q 001346 274 PHVYAIADTAYNEMMGD---------GVNQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1095)
Q Consensus 274 PHiyavA~~Ay~~m~~~---------~~~QsIiisGESGAGKTe~~K~il~yLa~~~~ 322 (1095)
-.++.+-......++.. ...+.|.|.|.||||||++++.|..++...+|
T Consensus 265 ~~~~~~l~~~l~~~l~~~~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G 322 (503)
T 2yhs_A 265 EALYGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGK 322 (503)
T ss_dssp GGHHHHHHHHHHHHHHTTBCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCCCCCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCC
Confidence 35677766777666642 35689999999999999999999998876544
No 145
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=85.98 E-value=0.32 Score=50.75 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=22.5
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 294 QSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
.-|+|.|.+|||||+.++.+.++|-
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999988774
No 146
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=85.91 E-value=0.32 Score=51.89 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=21.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~ 315 (1095)
...+.+.|.|+||||||+..|.+.-
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhc
Confidence 3568899999999999998887753
No 147
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=85.85 E-value=0.52 Score=49.55 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=23.5
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
..+.+.|.|++|||||+.++.++....
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~ 55 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGA 55 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 568999999999999999999986544
No 148
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=85.80 E-value=0.35 Score=52.20 Aligned_cols=25 Identities=32% Similarity=0.504 Sum_probs=22.5
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...|+|.|.||||||+.++.+...|
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999998755
No 149
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=85.73 E-value=0.39 Score=49.57 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=22.8
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 294 QSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
+.|.|.|.+|||||++.+.+..++.
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 4588999999999999999998887
No 150
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=85.70 E-value=0.4 Score=49.30 Aligned_cols=29 Identities=24% Similarity=0.347 Sum_probs=25.0
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
++--|+|+|-+|||||+.++.+.+.|-..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45689999999999999999998887643
No 151
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=85.69 E-value=4.2 Score=48.88 Aligned_cols=79 Identities=10% Similarity=-0.025 Sum_probs=54.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 001346 995 EQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQVSFTCFYTDIIM 1073 (1095)
Q Consensus 995 e~~~~l~~~l~elq~~~~eae~~l~~leeE~~~Lkeel~~~e~~~~e~e~k~~~~ee~~~k~~~~Lq~~l~~~kksla~ 1073 (1095)
++.+++++..+.+.++....++.+.+++++.+.++++....+.+..+.+++..++.+++.....+++..++....+..+
T Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~~ 587 (597)
T 3oja_B 509 KVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDT 587 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 3444555566666667777777777777888888888888888888888888888888777777777777665555443
No 152
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=85.63 E-value=0.35 Score=50.14 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=23.1
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
..+.+.|.|+||||||+.++.++-.+.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 568999999999999999998876443
No 153
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=85.47 E-value=0.61 Score=54.44 Aligned_cols=40 Identities=23% Similarity=0.174 Sum_probs=30.2
Q ss_pred HHHHHHHhhCCC-ceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 281 DTAYNEMMGDGV-NQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 281 ~~Ay~~m~~~~~-~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
..+...+..... ..+++|.|++|+|||+.++.+.+++...
T Consensus 117 ~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~ 157 (440)
T 2z4s_A 117 YHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQN 157 (440)
T ss_dssp HHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 344444544432 7899999999999999999999887653
No 154
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=85.44 E-value=0.48 Score=48.02 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=21.8
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
+...|+|+|-+|||||+.++.+-+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999988776
No 155
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=85.41 E-value=0.37 Score=53.97 Aligned_cols=31 Identities=26% Similarity=0.438 Sum_probs=26.7
Q ss_pred hCCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 289 GDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 289 ~~~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
..+...+|+|+|++|+|||..++.+.+.+..
T Consensus 40 ~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 40 RGEKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp SSCCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred cCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3567789999999999999999999887654
No 156
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=85.36 E-value=0.34 Score=54.24 Aligned_cols=35 Identities=29% Similarity=0.455 Sum_probs=28.2
Q ss_pred HHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 285 NEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 285 ~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
..+...+..++|+|+|++|+|||+.++.+.+.+..
T Consensus 37 ~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 37 APLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp GGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 33334667889999999999999999998877654
No 157
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=85.32 E-value=0.43 Score=56.87 Aligned_cols=45 Identities=11% Similarity=0.079 Sum_probs=35.6
Q ss_pred CCchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 273 SPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 273 ~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
.|+|..+..++|..-. +....|+++|-||||||+.++.+-+.|-.
T Consensus 377 rpeV~~vLr~~~~~~~--~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 377 YPEVVKILRESNPPRP--KQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CHHHHHHHHHHSCCGG--GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ChhhHHHHHHhccccc--ccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3778777777764322 33478999999999999999999998875
No 158
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=85.32 E-value=0.44 Score=48.73 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=22.5
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
+..-|+|+|-+|||||+.++.+.+.|
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 44679999999999999999988765
No 159
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=85.12 E-value=0.31 Score=49.81 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=21.9
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
..-|+|.|-+|||||+.++.+.+.|
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999887765
No 160
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=85.06 E-value=0.75 Score=50.19 Aligned_cols=31 Identities=26% Similarity=0.326 Sum_probs=26.4
Q ss_pred CCCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 290 DGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 290 ~~~~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
.+....|+|.|++|+|||+.++.+.+++...
T Consensus 64 ~~~~~~vll~G~~GtGKT~la~~la~~l~~~ 94 (309)
T 3syl_A 64 ETPTLHMSFTGNPGTGKTTVALKMAGLLHRL 94 (309)
T ss_dssp SCCCCEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3456689999999999999999998888653
No 161
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=85.04 E-value=0.52 Score=51.48 Aligned_cols=26 Identities=38% Similarity=0.400 Sum_probs=23.1
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
...++|.|++|+|||+.++.+.+.+.
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHc
Confidence 46899999999999999998888764
No 162
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=84.85 E-value=0.45 Score=51.22 Aligned_cols=23 Identities=30% Similarity=0.242 Sum_probs=19.8
Q ss_pred EEEEcCCCCCChhhHHHHHHHHH
Q 001346 295 SIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il~yL 317 (1095)
-|+|+|.+|||||+.++.+.+.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 58999999999999998886654
No 163
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=84.66 E-value=0.66 Score=52.01 Aligned_cols=26 Identities=35% Similarity=0.526 Sum_probs=23.8
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
...++|+|++|+|||..++.+.+.+.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 37999999999999999999988875
No 164
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=84.66 E-value=0.68 Score=51.79 Aligned_cols=31 Identities=29% Similarity=0.398 Sum_probs=27.4
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHhcC
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yLa~~~~ 322 (1095)
..+.|.|.|.+|+|||+++..+..+|+..++
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~ 134 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGY 134 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 4678999999999999999999999987654
No 165
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=84.56 E-value=10 Score=37.44 Aligned_cols=68 Identities=10% Similarity=0.135 Sum_probs=47.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001346 995 EQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQV 1062 (1095)
Q Consensus 995 e~~~~l~~~l~elq~~~~eae~~l~~leeE~~~Lkeel~~~e~~~~e~e~k~~~~ee~~~k~~~~Lq~ 1062 (1095)
..+..|+.++..++.++.+.+..+..+..-++.++.++..+.-+...++.++..++++.+..++.|-.
T Consensus 68 ~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~ 135 (152)
T 3a7p_A 68 NTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLK 135 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777777777777777777777777777777777777777776666655533
No 166
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=84.55 E-value=7.1 Score=38.19 Aligned_cols=14 Identities=29% Similarity=0.385 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q 001346 1021 KEEENAALREQLQQ 1034 (1095)
Q Consensus 1021 leeE~~~Lkeel~~ 1034 (1095)
+++|+..|+.++..
T Consensus 87 ~~kE~~~lK~el~~ 100 (138)
T 3hnw_A 87 KDKEIYDLKHELIA 100 (138)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 167
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=84.27 E-value=0.53 Score=49.49 Aligned_cols=28 Identities=21% Similarity=0.391 Sum_probs=24.8
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
..-|+|.|.+|||||+.++.+.++|...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4579999999999999999999998754
No 168
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=84.22 E-value=0.42 Score=53.25 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~y 316 (1095)
=..++|+|.||||||+..++++..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 357899999999999999888765
No 169
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.22 E-value=0.52 Score=52.61 Aligned_cols=37 Identities=11% Similarity=0.187 Sum_probs=26.6
Q ss_pred HHHHHHh-hCCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 282 TAYNEMM-GDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 282 ~Ay~~m~-~~~~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
.+.+... ..++-..++|+|++|+|||+.++.+...|.
T Consensus 24 ~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 24 NFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp HHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHS
T ss_pred HHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 3444444 433322399999999999999999988664
No 170
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=84.21 E-value=0.45 Score=50.69 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=21.8
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
+..|+|.|++|+|||+.++.+...+
T Consensus 49 ~~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 49 PKGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4559999999999999999987765
No 171
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=84.15 E-value=0.41 Score=49.70 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCCChhhHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~ 315 (1095)
+-.|+|+|.+|||||+.++.+-.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999888755
No 172
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=84.10 E-value=1.3 Score=55.19 Aligned_cols=66 Identities=15% Similarity=0.112 Sum_probs=41.9
Q ss_pred CCCCCCChHHHHHHcccCCCC-CchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 253 KAVPIYGNKFITAYRQKVMDS-PHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 253 k~l~~Y~~~~~~~y~~~~~~~-PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
..+.-|+.+..+.|+....++ ..-=....+ ...++..+....++|.|++|+|||..++.+.+.+..
T Consensus 167 ~~l~~~~~~l~~~~~~~~~d~~iGr~~~i~~-l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~ 233 (758)
T 1r6b_X 167 ERLENFTTNLNQLARVGGIDPLIGREKELER-AIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_dssp --CCSSSCBHHHHHHTTCSCCCCSCHHHHHH-HHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred hHHHHHhHhHHHHHhcCCCCCccCCHHHHHH-HHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHh
Confidence 345567777777776654443 100011112 333444556788999999999999999999988854
No 173
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=84.03 E-value=0.45 Score=49.38 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=20.6
Q ss_pred EEEcCCCCCChhhHHHHHHHHH
Q 001346 296 IIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 296 IiisGESGAGKTe~~K~il~yL 317 (1095)
|+|+|-+|||||+.++.+.+.|
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998876
No 174
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=83.95 E-value=0.59 Score=50.09 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=22.1
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
.+..|+|.||+|+|||+.++.+-+++
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 45789999999999999998886654
No 175
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=83.89 E-value=0.53 Score=50.33 Aligned_cols=26 Identities=19% Similarity=0.394 Sum_probs=22.9
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
+-.|.|.|.||||||+.++.+.+.|-
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999988763
No 176
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=83.84 E-value=0.44 Score=48.96 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=18.8
Q ss_pred EEEEcCCCCCChhhHHHHHHH
Q 001346 295 SIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il~ 315 (1095)
.|.|.|.+|||||+.++.+-.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999988865
No 177
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=83.83 E-value=0.49 Score=51.49 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
..+.+|+|.|++|+|||..++.+.+.+
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 346899999999999999999886643
No 178
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=83.79 E-value=0.66 Score=50.57 Aligned_cols=36 Identities=25% Similarity=0.252 Sum_probs=27.8
Q ss_pred HHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 283 AYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 283 Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
....++..+....++|+|++|+|||+.++.+.+.+.
T Consensus 28 ~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 28 RLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp HHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhc
Confidence 344444455544599999999999999999998874
No 179
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=83.75 E-value=0.58 Score=54.80 Aligned_cols=37 Identities=27% Similarity=0.417 Sum_probs=29.7
Q ss_pred HHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 282 TAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 282 ~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
...+.++..++-.+++|.|++|+|||+.++.+-+.+.
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3455566666668999999999999999999988753
No 180
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.69 E-value=0.78 Score=51.20 Aligned_cols=35 Identities=20% Similarity=0.325 Sum_probs=26.8
Q ss_pred HHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 284 YNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 284 y~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
....+..++-..+++.|++|+|||+.++.+.+.|.
T Consensus 37 L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 37 VRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp HHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 34444444433399999999999999999999875
No 181
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=83.64 E-value=14 Score=35.52 Aligned_cols=81 Identities=23% Similarity=0.205 Sum_probs=52.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhh
Q 001346 995 EQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQ---KQMASLQVSFTCFYTDI 1071 (1095)
Q Consensus 995 e~~~~l~~~l~elq~~~~eae~~l~~leeE~~~Lkeel~~~e~~~~e~e~k~~~~ee~~~---k~~~~Lq~~l~~~kksl 1071 (1095)
.....+..+...++..+......+...++....|......++..+.+++.++...++.+. .....++..+...++.+
T Consensus 41 ~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~l 120 (129)
T 2fxo_A 41 EKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDI 120 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666667776666666666777777777777777777777777777777666533 34444566666666665
Q ss_pred hhcc
Q 001346 1072 IMES 1075 (1095)
Q Consensus 1072 a~~~ 1075 (1095)
...+
T Consensus 121 ed~e 124 (129)
T 2fxo_A 121 DDLE 124 (129)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 182
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=83.58 E-value=0.55 Score=49.26 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=21.0
Q ss_pred EEEEcCCCCCChhhHHHHHHHHH
Q 001346 295 SIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il~yL 317 (1095)
-|+|.|-+|||||+.++.+.++|
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999998876
No 183
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=83.43 E-value=1.2 Score=48.77 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=23.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
..+..|+|+|++|+|||..++.+.+.+
T Consensus 36 ~~~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 36 EPLEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp SCCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 456889999999999999999998765
No 184
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=83.42 E-value=0.24 Score=48.34 Aligned_cols=24 Identities=17% Similarity=0.411 Sum_probs=19.7
Q ss_pred CceEEEEcCCCCCChhhHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~ 315 (1095)
.+..|+|.||+|+|||..++.+-+
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCC
T ss_pred CCCcEEEECCCCccHHHHHHHHHH
Confidence 456799999999999988876643
No 185
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=83.41 E-value=0.25 Score=58.90 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=21.8
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
.+.|+|+|++|||||++.+.++.++
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3559999999999999999887765
No 186
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=83.33 E-value=0.41 Score=49.07 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=19.3
Q ss_pred EEEEcCCCCCChhhHHHHHHH
Q 001346 295 SIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il~ 315 (1095)
.|.|+|.+|||||+.++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999877
No 187
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=83.25 E-value=0.65 Score=48.33 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=22.7
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
.--|+|.|-+|||||+.++.+-++|-
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45699999999999999999988763
No 188
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=83.23 E-value=1.7 Score=47.99 Aligned_cols=29 Identities=28% Similarity=0.248 Sum_probs=25.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
...+.|+|.|.+|||||+++..+..+++.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35679999999999999999999998885
No 189
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=83.22 E-value=1 Score=50.34 Aligned_cols=30 Identities=27% Similarity=0.476 Sum_probs=25.7
Q ss_pred CCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 290 DGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 290 ~~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
.+.+.+++|+|++|+|||+.++.+.+.+..
T Consensus 35 ~~~~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 35 GRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp TCCCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 445678999999999999999999887753
No 190
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=83.09 E-value=0.78 Score=47.99 Aligned_cols=32 Identities=22% Similarity=0.193 Sum_probs=25.6
Q ss_pred HHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 282 TAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 282 ~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
.++..+ ...+.+.|.|+||||||+..|.+.-.
T Consensus 14 ~~l~~i---~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 14 HYVDAI---DTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHHHHH---HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred HHHHhc---cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 345554 34678999999999999999998766
No 191
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=83.04 E-value=0.74 Score=48.76 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=25.1
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
...-|+|.|.+|||||+.++.+.++|..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4578999999999999999999998865
No 192
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=83.01 E-value=0.51 Score=50.36 Aligned_cols=27 Identities=15% Similarity=0.270 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.+.|.|+||||||+..|.+.-.+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356889999999999999999886543
No 193
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=82.90 E-value=0.5 Score=50.82 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
..+.+.|.|+||||||+..|.+.-.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999987544
No 194
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.81 E-value=0.78 Score=50.91 Aligned_cols=36 Identities=19% Similarity=0.236 Sum_probs=27.4
Q ss_pred HHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 283 AYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 283 Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
.....+..+....++|.|++|+|||+.++.+.+.+.
T Consensus 48 ~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 48 VLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp HHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344444444333499999999999999999998875
No 195
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=82.76 E-value=0.62 Score=49.01 Aligned_cols=27 Identities=37% Similarity=0.572 Sum_probs=24.1
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 294 QSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
.-|+|.|-+|||||+.++.+.++|...
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 469999999999999999999998754
No 196
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=82.70 E-value=0.53 Score=51.00 Aligned_cols=26 Identities=23% Similarity=0.498 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...+.+.|.|+||||||+..|.++-.
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45689999999999999999988644
No 197
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=82.65 E-value=0.78 Score=51.39 Aligned_cols=28 Identities=29% Similarity=0.350 Sum_probs=23.9
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
..-.|-|+|.||||||+.++.+...|..
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3447999999999999999999888764
No 198
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=82.61 E-value=0.64 Score=49.73 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.+.|.|+||||||+..|.+.-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456889999999999999999886554
No 199
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=82.61 E-value=0.61 Score=49.93 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=21.1
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
.. +.+.|.|+||||||+..|.+.-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCC
Confidence 35 78899999999999999987544
No 200
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=82.45 E-value=0.61 Score=50.35 Aligned_cols=26 Identities=31% Similarity=0.360 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
.....|+|.|++|+|||..++.+.+.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 45678999999999999999888654
No 201
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=82.41 E-value=0.62 Score=50.11 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=21.4
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
..+.+.|.|+||||||+..|.+.-.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578899999999999999988653
No 202
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=82.33 E-value=0.65 Score=49.68 Aligned_cols=29 Identities=31% Similarity=0.507 Sum_probs=25.4
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYLAALG 321 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yLa~~~ 321 (1095)
..-|+|.|.+|||||+.++.+.++|...+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~ 55 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNG 55 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 46899999999999999999999887543
No 203
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=82.24 E-value=15 Score=34.91 Aligned_cols=75 Identities=12% Similarity=0.149 Sum_probs=55.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001346 996 QVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQVSFTCFYTD 1070 (1095)
Q Consensus 996 ~~~~l~~~l~elq~~~~eae~~l~~leeE~~~Lkeel~~~e~~~~e~e~k~~~~ee~~~k~~~~Lq~~l~~~kks 1070 (1095)
++..++..+++++.+.++........+.++..|++.+...-..+.++|.+++.+.+++.=....-+.++.+.+..
T Consensus 42 eldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~heeEl~eLq~q 116 (119)
T 3ol1_A 42 ERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEEEIQELQAQ 116 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777666677788888889999988888888899999888888665444445555555443
No 204
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=82.17 E-value=17 Score=32.23 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001346 1006 ELQRRVLKAEATLGQKEEENAALREQLQQYDA 1037 (1095)
Q Consensus 1006 elq~~~~eae~~l~~leeE~~~Lkeel~~~e~ 1037 (1095)
+|+.++..+-..+.-++.|++.|+++...+..
T Consensus 10 qLE~KIq~avdtI~lLqmEieELKekN~~L~~ 41 (81)
T 2jee_A 10 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQ 41 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334433333333333333333333333333
No 205
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=82.12 E-value=0.64 Score=51.14 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
..+..|+|.|++|+|||..++.+...+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 456789999999999999999887654
No 206
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=82.09 E-value=0.69 Score=49.19 Aligned_cols=29 Identities=28% Similarity=0.328 Sum_probs=22.4
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
+..-|+|.|.+|||||+.++.+.++|...
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 45689999999999999999999988753
No 207
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=82.02 E-value=0.6 Score=52.11 Aligned_cols=24 Identities=38% Similarity=0.595 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...|+|.|+||+|||+++-.+++.
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc
Confidence 589999999999999999888774
No 208
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=82.02 E-value=0.54 Score=51.46 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
..+.+.|.|+||||||+..|.+.-.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 4578999999999999999887543
No 209
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=82.01 E-value=1.1 Score=47.33 Aligned_cols=36 Identities=25% Similarity=0.380 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHHHHHH
Q 001346 276 VYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAM 314 (1095)
Q Consensus 276 iyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il 314 (1095)
+|.+-+.++..+.. ++.+++.|++|||||+....++
T Consensus 62 ~~~~q~~~i~~i~~---g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 62 VKKFESEILEAISQ---NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp GGGGHHHHHHHHHH---CSEEEEECCTTSSHHHHHHHHH
T ss_pred hHHHHHHHHHHHhc---CCEEEEEeCCCCCcHHhHHHHH
Confidence 45555666666654 4789999999999998776554
No 210
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=81.98 E-value=0.67 Score=50.37 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...+.+.|.|+||||||+..|.+.-.
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999999988654
No 211
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=81.98 E-value=0.71 Score=49.33 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=22.2
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
..-.|.|+|-+|||||+.++.+-+.|-
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 345799999999999999998866543
No 212
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=81.98 E-value=1.6 Score=51.37 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=26.0
Q ss_pred hCCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 289 GDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 289 ~~~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
..+....++|.|++|.|||..++.+.+.+..
T Consensus 197 ~r~~~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 197 SRRTKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp HCSSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred hccCCCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 3355668999999999999999999988753
No 213
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=81.88 E-value=0.56 Score=51.04 Aligned_cols=26 Identities=31% Similarity=0.547 Sum_probs=21.9
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
..+.+.|.|+||||||+..|.+.-.+
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45788999999999999999886544
No 214
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=81.87 E-value=0.59 Score=50.96 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.+.|.|+||||||+..|.|+-.+
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456889999999999999999885543
No 215
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=81.86 E-value=1.1 Score=49.65 Aligned_cols=29 Identities=21% Similarity=0.335 Sum_probs=25.8
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH-Hhc
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYLA-ALG 321 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yLa-~~~ 321 (1095)
.+.|+|.|++|+|||..++.+...+. ..+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g 181 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKG 181 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcC
Confidence 68999999999999999999999888 543
No 216
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=81.84 E-value=0.64 Score=50.37 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=21.6
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
+..|+|.|++|+|||+.++.+...+
T Consensus 73 ~~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 73 PKGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCcChHHHHHHHHHHHc
Confidence 3459999999999999999987765
No 217
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=81.77 E-value=0.66 Score=50.29 Aligned_cols=25 Identities=28% Similarity=0.330 Sum_probs=20.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~ 315 (1095)
...+.+.|.|+||||||+..|.+.-
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3567889999999999999887743
No 218
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=81.75 E-value=1.2 Score=49.81 Aligned_cols=28 Identities=29% Similarity=0.442 Sum_probs=24.5
Q ss_pred CCCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 290 DGVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 290 ~~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
......++|.|++|+|||+.++.+...+
T Consensus 48 ~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 48 GEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp TCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3445789999999999999999999887
No 219
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=81.60 E-value=0.55 Score=52.38 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=20.5
Q ss_pred CceEEEEcCCCCCChhhHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~ 315 (1095)
....|+|+|+||+|||+++-.+++
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999977654
No 220
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=81.33 E-value=0.58 Score=49.44 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=19.8
Q ss_pred CceEEEEcCCCCCChhhHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAM 314 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il 314 (1095)
..+.+.|.|+||||||+..|.+.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~ 51 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILG 51 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 45788999999999999988774
No 221
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=81.24 E-value=0.71 Score=50.17 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=21.2
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~ 315 (1095)
...+.+.|.|+||||||+..|.+.-
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHc
Confidence 3568899999999999999988743
No 222
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=81.07 E-value=0.5 Score=50.60 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
..+..|+|.|++|+|||..++.+.+.+
T Consensus 42 ~~~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 42 KIPKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 345679999999999999999887765
No 223
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=81.04 E-value=1.1 Score=49.79 Aligned_cols=28 Identities=29% Similarity=0.394 Sum_probs=23.1
Q ss_pred CCCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 290 DGVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 290 ~~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
......|+|+|++|+|||..++.+-+.+
T Consensus 52 ~~~~~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 52 NECLDHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp TSCCCCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 3456789999999999999999885553
No 224
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=81.02 E-value=1.9 Score=50.31 Aligned_cols=31 Identities=29% Similarity=0.337 Sum_probs=27.4
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHhcC
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yLa~~~~ 322 (1095)
....|++.|.+|||||+++..+..+|+..+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~ 126 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGY 126 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 4679999999999999999999999987544
No 225
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=80.97 E-value=1.1 Score=47.37 Aligned_cols=30 Identities=27% Similarity=0.419 Sum_probs=26.0
Q ss_pred CCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 290 DGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 290 ~~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
..+..-|+|.|-+|||||+.++.+.++|..
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345678999999999999999999998875
No 226
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=80.96 E-value=2 Score=42.39 Aligned_cols=20 Identities=30% Similarity=0.322 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 001346 907 NGVITLQSFARGENTRRRHA 926 (1095)
Q Consensus 907 ~aai~IQs~~Rg~~aRr~y~ 926 (1095)
.+++.||+.+|||++|+++.
T Consensus 46 ~~~i~iQktvR~~L~rkkhk 65 (148)
T 3gn4_A 46 EACIKMQKTIRMWLCKRRHK 65 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 34555555556655555554
No 227
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=80.96 E-value=64 Score=46.45 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=17.1
Q ss_pred CceEEEEcCCCCCChhhHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAM 314 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il 314 (1095)
..+.|++.|++|+|||.+.+..+
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L 1325 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTL 1325 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHG
T ss_pred CCCcEEEECCCCCCHHHHHHHHH
Confidence 35679999999999997654433
No 228
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=80.80 E-value=0.94 Score=49.45 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=25.2
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
...+.++|.|++|||||+.++.+.-.++.
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~ 61 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGT 61 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999998877664
No 229
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=80.71 E-value=1.8 Score=47.75 Aligned_cols=52 Identities=21% Similarity=0.323 Sum_probs=34.7
Q ss_pred HHHHHcccCCC----CCchhHHHHHHHHHHhh-CCCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 262 FITAYRQKVMD----SPHVYAIADTAYNEMMG-DGVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 262 ~~~~y~~~~~~----~PHiyavA~~Ay~~m~~-~~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
..+.|+-.... ..|+. ...+.++. .+.+..+++.|++|+|||+.++.+.+.+
T Consensus 16 ~~~k~rP~~~~~ivg~~~~~----~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 16 LEQKYRPSTIDECILPAFDK----ETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp HHHHSCCCSTTTSCCCHHHH----HHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred HHHhhCCCCHHHHhCcHHHH----HHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 35667655443 23443 33333433 4456789999999999999999997766
No 230
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=80.68 E-value=1.7 Score=49.36 Aligned_cols=41 Identities=24% Similarity=0.374 Sum_probs=30.6
Q ss_pred HHHHHHHHHHh---hCCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 278 AIADTAYNEMM---GDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 278 avA~~Ay~~m~---~~~~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
.+++.+...+. ..++-..|+|.|.+|||||+.++.+...|.
T Consensus 6 ~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 6 KLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 45666666553 344556799999999999999998877554
No 231
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=80.66 E-value=13 Score=40.05 Aligned_cols=70 Identities=13% Similarity=0.175 Sum_probs=42.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001346 995 EQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQVSF 1064 (1095)
Q Consensus 995 e~~~~l~~~l~elq~~~~eae~~l~~leeE~~~Lkeel~~~e~~~~e~e~k~~~~ee~~~k~~~~Lq~~l 1064 (1095)
.+...+..+++.++++...++..+.++.++.+.+++.+...+....+.+..+...+.++...+..++.++
T Consensus 90 kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~ 159 (256)
T 3na7_A 90 RELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQ 159 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666666666666666666666666665555555555554444444443
No 232
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=80.66 E-value=0.57 Score=49.33 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=20.7
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
..+.+.|.|+||||||+..|.+.-.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4577899999999999999887443
No 233
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=80.65 E-value=0.74 Score=49.71 Aligned_cols=25 Identities=20% Similarity=0.407 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
..+.+.|.|+||||||+..|.+.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578899999999999999987543
No 234
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=80.58 E-value=0.67 Score=49.11 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=21.9
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
..+.+.|.|+||||||+..|.++-.+
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46789999999999999999886543
No 235
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=80.57 E-value=0.78 Score=47.94 Aligned_cols=26 Identities=38% Similarity=0.493 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
....|+|+|.||||||+.+..+.+.+
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 35789999999999999887776543
No 236
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=80.56 E-value=0.68 Score=50.44 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=21.4
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001346 295 SIIISGESGAGKTETAKFAMQYLAALG 321 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il~yLa~~~ 321 (1095)
.|.|.|+||||||+..+.+...+...+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~ 30 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRK 30 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 578999999999999999987765433
No 237
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=80.49 E-value=1.1 Score=48.73 Aligned_cols=35 Identities=31% Similarity=0.440 Sum_probs=26.4
Q ss_pred HHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 284 YNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 284 y~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
...++..+....++|+|++|+|||+.++.+.+.+.
T Consensus 33 l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 33 LQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp HHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 33344444433399999999999999999998874
No 238
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=80.47 E-value=0.83 Score=46.94 Aligned_cols=33 Identities=18% Similarity=0.157 Sum_probs=25.0
Q ss_pred HHHHHhh--CCCceEEEEcCCCCCChhhHHHHHHH
Q 001346 283 AYNEMMG--DGVNQSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 283 Ay~~m~~--~~~~QsIiisGESGAGKTe~~K~il~ 315 (1095)
++..++. -...+.++|.|++|||||+.++.++.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3444543 23567899999999999999988865
No 239
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=80.46 E-value=0.86 Score=50.79 Aligned_cols=30 Identities=20% Similarity=0.274 Sum_probs=22.0
Q ss_pred HhhCCCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 287 MMGDGVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 287 m~~~~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
|.....+..|+|+|.||||||+.+..+.+.
T Consensus 4 ~~~~~~~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 4 ISKASLPKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp ---CCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccCCCCcEEEEECCCccCHHHHHHHHHHh
Confidence 334445678999999999999888776554
No 240
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=80.41 E-value=0.32 Score=54.62 Aligned_cols=28 Identities=29% Similarity=0.644 Sum_probs=23.8
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
..+.|.|.|+||||||+..+.++.++..
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~ 197 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPK 197 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 3568999999999999999999887643
No 241
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=80.38 E-value=0.79 Score=49.75 Aligned_cols=25 Identities=16% Similarity=0.492 Sum_probs=20.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~ 315 (1095)
...+.+.|.|+||||||+..|.+.-
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhC
Confidence 3567889999999999999888743
No 242
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=80.24 E-value=0.83 Score=51.74 Aligned_cols=26 Identities=31% Similarity=0.462 Sum_probs=22.5
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
....|+|.|++|+|||+.++.+-+.+
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999887654
No 243
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=80.14 E-value=1.5 Score=49.61 Aligned_cols=37 Identities=30% Similarity=0.518 Sum_probs=28.6
Q ss_pred HHH-HHHhhC--CCceEEEE--cCCCCCChhhHHHHHHHHHH
Q 001346 282 TAY-NEMMGD--GVNQSIII--SGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 282 ~Ay-~~m~~~--~~~QsIii--sGESGAGKTe~~K~il~yLa 318 (1095)
.++ ...... ...+.++| +|++|.|||+.++.+.+.+.
T Consensus 36 ~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~ 77 (412)
T 1w5s_A 36 RIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVS 77 (412)
T ss_dssp HHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred HHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHH
Confidence 344 455545 56789999 99999999999998877654
No 244
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=80.13 E-value=1.7 Score=48.52 Aligned_cols=31 Identities=16% Similarity=0.262 Sum_probs=27.1
Q ss_pred hCCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 289 GDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 289 ~~~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
.++-+.+++++|+.|.|||+.++.+.+.|..
T Consensus 20 ~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 20 AGRGHHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp TTCCCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred cCCcceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 3456889999999999999999999988864
No 245
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=80.12 E-value=1.3 Score=48.92 Aligned_cols=31 Identities=29% Similarity=0.324 Sum_probs=27.3
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHhcC
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yLa~~~~ 322 (1095)
..+.|.|.|.+|+|||+++..+..+++..++
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~ 127 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGR 127 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 4678999999999999999999999987554
No 246
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=80.09 E-value=0.82 Score=49.44 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=20.6
Q ss_pred CCceEEEEcCCCCCChhhHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAM 314 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il 314 (1095)
...+.+.|.|+||||||+..|.+.
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~ 62 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIIS 62 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHh
Confidence 356789999999999999988874
No 247
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=80.09 E-value=11 Score=34.47 Aligned_cols=35 Identities=23% Similarity=0.206 Sum_probs=14.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001346 998 QALPTALAELQRRVLKAEATLGQKEEENAALREQL 1032 (1095)
Q Consensus 998 ~~l~~~l~elq~~~~eae~~l~~leeE~~~Lkeel 1032 (1095)
..|...+.+-+.....++.....++.|++.|...|
T Consensus 29 ~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 29 KRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444333343444444444444444444333
No 248
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=80.01 E-value=0.84 Score=52.34 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=21.6
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...+.+.|.|+||||||+..|.|.-.
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcC
Confidence 34578899999999999999888544
No 249
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=79.95 E-value=0.93 Score=46.80 Aligned_cols=52 Identities=23% Similarity=0.380 Sum_probs=32.6
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHHhcCCCcchHHHHHh--hhHHHHHhccc
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYLAALGGGSEGIEYEILQ--TNHILEAFGNA 344 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yLa~~~~~~~~ie~~il~--snpiLEAFGNA 344 (1095)
.--|.|+|-+|||||+.++.+-+.|-..-=..+.+-.++.. ...|.+.||..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~~~~~i~~~fG~~ 65 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEEVKEKLVELFGGS 65 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTHHHHHHHHCGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHHHHHHHHHHhChh
Confidence 45689999999999999999887642100011223233332 24577888864
No 250
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=79.94 E-value=0.9 Score=47.85 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=23.0
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
..-|+|.|-+|||||+.++.+-++|-
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999988763
No 251
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=79.66 E-value=0.8 Score=47.66 Aligned_cols=24 Identities=25% Similarity=0.535 Sum_probs=21.9
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHH
Q 001346 294 QSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~yL 317 (1095)
..|+|.|-+|||||+.++.+-++|
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999998877
No 252
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=79.63 E-value=0.84 Score=48.73 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=20.9
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
..+.+.|.|+||||||+..|.+.-.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578899999999999998887543
No 253
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=79.30 E-value=1.3 Score=49.89 Aligned_cols=26 Identities=31% Similarity=0.448 Sum_probs=22.9
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
.+..|+|.|++|+|||+.++.+-+.+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999987765
No 254
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=79.24 E-value=1.2 Score=46.68 Aligned_cols=30 Identities=23% Similarity=0.330 Sum_probs=24.8
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yLa~~~ 321 (1095)
....++|.|++|||||+.+..++..++..+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~ 51 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMG 51 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 467899999999999999888877766543
No 255
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=78.88 E-value=0.86 Score=50.55 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=21.7
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
....|+|.|++|+|||+.++.+.+.+
T Consensus 44 ~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred CCceEEEECCCCccHHHHHHHHHHhC
Confidence 34569999999999999998877654
No 256
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=78.78 E-value=0.95 Score=47.28 Aligned_cols=25 Identities=20% Similarity=0.125 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
..+.++|.|++|||||+.++.++..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 5678999999999999998887643
No 257
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=78.76 E-value=0.87 Score=50.35 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
..+..|+|.||+|+|||..++.+-+++
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 456789999999999999998887654
No 258
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=78.68 E-value=1.2 Score=46.89 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
.....|.|+|.+|||||+.++.+...|
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345689999999999999999887754
No 259
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=78.66 E-value=0.84 Score=49.15 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=20.9
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
..+.+.|.|+||||||+..|.+.-.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4578899999999999998887543
No 260
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=78.62 E-value=0.83 Score=50.03 Aligned_cols=25 Identities=32% Similarity=0.431 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
..+.+.|.|+||||||+..|.+.-.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4578899999999999998887543
No 261
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=78.56 E-value=0.93 Score=48.85 Aligned_cols=26 Identities=15% Similarity=0.339 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
..+.+.|.|+||||||+..|.+.-.+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45788999999999999998875443
No 262
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=78.44 E-value=0.92 Score=47.82 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=23.3
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
+..-|+|.|.+|||||+.++.+.++|.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 356899999999999999999887764
No 263
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=78.14 E-value=2.7 Score=54.04 Aligned_cols=45 Identities=4% Similarity=-0.205 Sum_probs=32.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHhhhHHHHHHHHHHHHHHHHHHHH
Q 001346 904 ELCNGVITLQSFARGENTRRRHASLGKSCSAVVPEIRDEQLREIICLQSAIRGWLVRKQLK 964 (1095)
Q Consensus 904 ~lr~aai~IQs~~Rg~~aRr~y~~lr~~AA~~IQ~~~~~~~~Aai~IQs~~Rg~laRr~~~ 964 (1095)
.+...++.|| .+||+++|++|+++++ +++.||..+|++..|+...
T Consensus 773 ~~~~~~~~iq-~~r~~l~r~~~~k~~~---------------~a~~i~~~~r~~~~r~~~~ 817 (1052)
T 4anj_A 773 DPDHLAELVK-RVNHWLICSRWKKVQW---------------CSLSVIKLKNKIKYRAEAV 817 (1052)
T ss_dssp CHHHHHHHHH-HHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHcc
Confidence 3445566566 5899999999987754 6777888888777665443
No 264
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=78.08 E-value=0.93 Score=51.15 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHH
Q 001346 294 QSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~yL 317 (1095)
-.|+|+|.||||||+.++.+.+.|
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 479999999999999998876654
No 265
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=78.03 E-value=1.1 Score=48.77 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCChhhHHHHHHHH
Q 001346 294 QSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~y 316 (1095)
..|+|+|-||||||+.++.+.+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46999999999999999988763
No 266
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=78.00 E-value=2.2 Score=49.86 Aligned_cols=30 Identities=27% Similarity=0.432 Sum_probs=26.8
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yLa~~~ 321 (1095)
.+..|+++|.+|+|||+++-.+..||+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G 128 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRG 128 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCC
Confidence 468999999999999999999999998643
No 267
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=77.78 E-value=0.66 Score=51.61 Aligned_cols=27 Identities=26% Similarity=0.513 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.+.|.|+||||||+..|.++.++
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 456899999999999999999887654
No 268
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=77.55 E-value=1.1 Score=51.04 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=20.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~ 315 (1095)
...+.+.|.|+||||||+..|.+.-
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhc
Confidence 3457889999999999999888753
No 269
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=77.39 E-value=1 Score=46.54 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHH
Q 001346 294 QSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~yL 317 (1095)
..|+|+|.+|||||+.++.+-+.|
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 469999999999999999886654
No 270
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=77.34 E-value=0.98 Score=45.26 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHH
Q 001346 294 QSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+|.|++|||||+..+.|.--|
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 378999999999999888765433
No 271
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=77.25 E-value=1.3 Score=52.75 Aligned_cols=26 Identities=35% Similarity=0.501 Sum_probs=23.3
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+++|+|++|+|||+.++.+.+.+
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35799999999999999999998876
No 272
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=77.18 E-value=1 Score=51.27 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
..+.+.|.|+||||||+..|.|.-.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcC
Confidence 4578899999999999998887544
No 273
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=77.17 E-value=0.97 Score=49.06 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCCChhhHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~ 315 (1095)
.+.+.|.|+||||||+..|.+.-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 57889999999999999988754
No 274
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=76.95 E-value=1 Score=47.63 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=22.7
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
..-|+|.|-+|||||+.++.+.++|.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 35699999999999999999988773
No 275
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=76.90 E-value=0.98 Score=51.15 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=23.5
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
.+-+.|.|+||||||+.+|.+..++..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 578999999999999999999887643
No 276
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=76.86 E-value=1.2 Score=50.66 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...+.+.|.|+||||||+..|.|.-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCC
Confidence 34678899999999999999887543
No 277
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=76.81 E-value=1.2 Score=48.90 Aligned_cols=27 Identities=22% Similarity=0.301 Sum_probs=23.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
+.+-.|++.|++|+|||..++.+-+.+
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998876
No 278
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=76.81 E-value=1.4 Score=48.87 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=22.6
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
....|+|.|++|+|||..++.+.+.+
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 45789999999999999999887664
No 279
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=76.58 E-value=1.2 Score=50.38 Aligned_cols=27 Identities=30% Similarity=0.409 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
..+..|+|.|++|+|||..++.+.+.+
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456799999999999999999886543
No 280
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=76.28 E-value=1.7 Score=52.22 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=27.1
Q ss_pred HHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 285 NEMMGDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 285 ~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
..+........++|.|++|+|||+.++.+-..+.
T Consensus 100 ~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 100 QKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp HHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred HHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3333344677999999999999999999988873
No 281
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=76.27 E-value=2.7 Score=52.30 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=25.8
Q ss_pred hCCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 289 GDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 289 ~~~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
..+..-.|+|.|++|+|||..++.+.+.+..
T Consensus 197 ~~~~~~~vLL~G~pGtGKT~la~~la~~l~~ 227 (758)
T 3pxi_A 197 SRRTKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (758)
T ss_dssp HCSSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred hCCCCCCeEEECCCCCCHHHHHHHHHHHHhc
Confidence 3355567999999999999999999988753
No 282
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=76.23 E-value=1.3 Score=50.52 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=21.3
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...+.+.|.|+||||||+..|.|.-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcC
Confidence 34678899999999999998887543
No 283
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=76.12 E-value=0.98 Score=49.79 Aligned_cols=27 Identities=33% Similarity=0.442 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.+.|.|+||||||+..|.++-.+
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 356889999999999999999886543
No 284
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=75.92 E-value=8.8 Score=33.86 Aligned_cols=49 Identities=22% Similarity=0.216 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001346 1015 EATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQVS 1063 (1095)
Q Consensus 1015 e~~l~~leeE~~~Lkeel~~~e~~~~e~e~k~~~~ee~~~k~~~~Lq~~ 1063 (1095)
..+++.++.+|..|++++..++..+.+...+-.....++++.++.|.-+
T Consensus 12 ~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~K 60 (79)
T 3cvf_A 12 QQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVS 60 (79)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3444444555555555555555555544444444444444444444443
No 285
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=75.86 E-value=1.7 Score=50.43 Aligned_cols=31 Identities=29% Similarity=0.324 Sum_probs=27.1
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHhcC
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yLa~~~~ 322 (1095)
....|++.|.+|||||+++..+..+|+..++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~ 127 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGR 127 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 4688999999999999999999999986543
No 286
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=75.80 E-value=1 Score=50.34 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCChhhHHHHHHHH
Q 001346 294 QSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~y 316 (1095)
--|+|+|.||||||+.++.+.+.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 46899999999999887776543
No 287
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=75.69 E-value=1.3 Score=50.31 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=20.6
Q ss_pred CceEEEEcCCCCCChhhHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~ 315 (1095)
..+.+.|.|+||||||+..|.|.-
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 457889999999999999988753
No 288
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=75.64 E-value=1.4 Score=50.38 Aligned_cols=28 Identities=32% Similarity=0.300 Sum_probs=23.6
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
.+..++|.|.||||||+.+|.++..+..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~ 61 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYM 61 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4667899999999999999998876653
No 289
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=75.51 E-value=1.2 Score=48.48 Aligned_cols=24 Identities=25% Similarity=0.248 Sum_probs=20.6
Q ss_pred CceEEEEcCCCCCChhhHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~ 315 (1095)
+.--|+|+|-+|||||+.++.+-+
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999988864
No 290
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=75.51 E-value=1.4 Score=50.46 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...+.+.|.|+||||||+..|.|.-.
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcC
Confidence 34678899999999999998887544
No 291
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=75.41 E-value=2.1 Score=44.23 Aligned_cols=34 Identities=18% Similarity=0.195 Sum_probs=26.4
Q ss_pred HHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 285 NEMMGDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 285 ~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
+.+......--|+|.|.+|+|||+.+..++..+.
T Consensus 30 r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 30 RKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3344445667899999999999999988887754
No 292
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=75.41 E-value=1.4 Score=47.72 Aligned_cols=27 Identities=22% Similarity=0.155 Sum_probs=23.5
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
+.+.++|.|.+|||||+.++.++..++
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 568999999999999999999887554
No 293
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=75.35 E-value=2.1 Score=47.29 Aligned_cols=30 Identities=30% Similarity=0.329 Sum_probs=26.7
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHHhcC
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yLa~~~~ 322 (1095)
...|+++|.+|+|||+++..+..+++..++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~ 127 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGF 127 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 678999999999999999999999987554
No 294
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=75.34 E-value=3.6 Score=41.66 Aligned_cols=56 Identities=11% Similarity=0.229 Sum_probs=35.1
Q ss_pred CCCCCCCCChHHHHHHcccCCCCCchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHHHH
Q 001346 251 PFKAVPIYGNKFITAYRQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKF 312 (1095)
Q Consensus 251 P~k~l~~Y~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~ 312 (1095)
.|..+++ +++..+.........|-.|. ..|+..+... +.+++.+++|||||.+.-.
T Consensus 4 ~f~~~~l-~~~l~~~l~~~g~~~~~~~Q--~~~i~~~~~~---~~~lv~apTGsGKT~~~~~ 59 (206)
T 1vec_A 4 EFEDYCL-KRELLMGIFEMGWEKPSPIQ--EESIPIALSG---RDILARAKNGTGKSGAYLI 59 (206)
T ss_dssp SGGGSCC-CHHHHHHHHTTTCCSCCHHH--HHHHHHHHTT---CCEEEECCSSSTTHHHHHH
T ss_pred ChhhcCC-CHHHHHHHHHCCCCCCCHHH--HHHHHHHccC---CCEEEECCCCCchHHHHHH
Confidence 4555554 45566665554444444443 4566666543 4599999999999976543
No 295
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=75.28 E-value=2.3 Score=47.68 Aligned_cols=42 Identities=24% Similarity=0.312 Sum_probs=32.3
Q ss_pred HHHHHHHh-hCCCceEEEEcCCCCCChhhHHHHHHHHHHHhcC
Q 001346 281 DTAYNEMM-GDGVNQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1095)
Q Consensus 281 ~~Ay~~m~-~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~~ 322 (1095)
..+...+. .-.....|.|.|.+|||||+..+.++.++...++
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g 84 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGH 84 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCC
Confidence 44555553 3467789999999999999999999988765443
No 296
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=75.28 E-value=1.2 Score=48.41 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
+..|+|.|++|+|||+.+|.+...+
T Consensus 44 ~~GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 44 PAGVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHc
Confidence 3449999999999999999887654
No 297
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=75.04 E-value=1.5 Score=45.67 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.8
Q ss_pred EEEcCCCCCChhhHHHHHHHHHH
Q 001346 296 IIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 296 IiisGESGAGKTe~~K~il~yLa 318 (1095)
|||.|..||||++-++.+.+.+-
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 89999999999999999988763
No 298
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=74.85 E-value=2.3 Score=51.81 Aligned_cols=29 Identities=31% Similarity=0.423 Sum_probs=25.6
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
+...|+|+|-||||||+.++.+-++|...
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~ 79 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCH 79 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 56789999999999999999999998543
No 299
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=74.85 E-value=1 Score=52.14 Aligned_cols=28 Identities=18% Similarity=0.195 Sum_probs=23.2
Q ss_pred CCCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 290 DGVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 290 ~~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
.....-|||+|-||||||+.++.+.+.+
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 3456789999999999999999886644
No 300
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=74.76 E-value=2.8 Score=48.21 Aligned_cols=47 Identities=19% Similarity=0.046 Sum_probs=42.7
Q ss_pred CchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 274 PHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 274 PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
|.+..+.-+|..-+.--.+-|.+.|.|.||+|||+.++.|.++++.-
T Consensus 155 ~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~ 201 (422)
T 3ice_A 155 GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYN 201 (422)
T ss_dssp CCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHH
T ss_pred CCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhc
Confidence 56778999999999999999999999999999999999999988753
No 301
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=74.68 E-value=41 Score=29.54 Aligned_cols=52 Identities=19% Similarity=0.219 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001346 1003 ALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQ 1054 (1095)
Q Consensus 1003 ~l~elq~~~~eae~~l~~leeE~~~Lkeel~~~e~~~~e~e~k~~~~ee~~~ 1054 (1095)
.+..++...+.+...+...+.+...........+.....+..+++.+++.+.
T Consensus 7 Km~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld 58 (81)
T 1ic2_A 7 KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELD 58 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444444444443
No 302
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=74.62 E-value=1.4 Score=50.28 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=20.4
Q ss_pred CceEEEEcCCCCCChhhHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~ 315 (1095)
..+.+.|.|+||||||+..|.|.-
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCcHHHHHHHHHHc
Confidence 457889999999999999888743
No 303
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=74.60 E-value=3.7 Score=45.68 Aligned_cols=62 Identities=16% Similarity=0.334 Sum_probs=41.7
Q ss_pred EcCCCCCCCCChHHHHHHcccCCCCCchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHHHHHH
Q 001346 249 VNPFKAVPIYGNKFITAYRQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAM 314 (1095)
Q Consensus 249 vNP~k~l~~Y~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il 314 (1095)
.++|..+++ +++..+.........|..|. ..|+..++.. .++.+|+.+++|+|||.+.-..+
T Consensus 4 ~~~f~~~~l-~~~l~~~l~~~~~~~~~~~Q--~~~i~~~~~~-~~~~~lv~a~TGsGKT~~~~~~~ 65 (395)
T 3pey_A 4 AKSFDELGL-APELLKGIYAMKFQKPSKIQ--ERALPLLLHN-PPRNMIAQSQSGTGKTAAFSLTM 65 (395)
T ss_dssp CCSSTTSCC-CHHHHHHHHHTTCCSCCHHH--HHHHHHHHCS-SCCCEEEECCTTSCHHHHHHHHH
T ss_pred ccCHhhCCC-CHHHHHHHHHCCCCCCCHHH--HHHHHHHHcC-CCCeEEEECCCCCcHHHHHHHHH
Confidence 367888875 45566555555544555544 4667776654 44779999999999998765443
No 304
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=74.58 E-value=1.9 Score=44.36 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
...--|+|.|.+|||||+.+..++..+.
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3456899999999999999998888763
No 305
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=74.55 E-value=17 Score=34.99 Aligned_cols=33 Identities=15% Similarity=0.333 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001346 1000 LPTALAELQRRVLKAEATLGQKEEENAALREQL 1032 (1095)
Q Consensus 1000 l~~~l~elq~~~~eae~~l~~leeE~~~Lkeel 1032 (1095)
.+.++.++++.+...+.++..+...+..|...+
T Consensus 34 ~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l 66 (129)
T 3tnu_B 34 TKHEISEMNRMIQRLRAEIDNVKKQCANLQNAI 66 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344555555555544444444444444443333
No 306
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=74.50 E-value=1.5 Score=48.91 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=22.9
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
....|+|.|++|+|||..++.+.+.+
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 35789999999999999999887765
No 307
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=74.46 E-value=25 Score=34.71 Aligned_cols=65 Identities=6% Similarity=0.097 Sum_probs=45.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001346 995 EQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMAS 1059 (1095)
Q Consensus 995 e~~~~l~~~l~elq~~~~eae~~l~~leeE~~~Lkeel~~~e~~~~e~e~k~~~~ee~~~k~~~~ 1059 (1095)
.+...+...+.++...+.+..+.+..+.+|+..|+-++...+.+...++.+.+.+-+.|=+.+..
T Consensus 75 ~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~q 139 (152)
T 3a7p_A 75 KELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTEK 139 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666667777777777777777777777777777777777776654444
No 308
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=74.32 E-value=1.9 Score=44.51 Aligned_cols=26 Identities=35% Similarity=0.606 Sum_probs=23.6
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHHhc
Q 001346 296 IIISGESGAGKTETAKFAMQYLAALG 321 (1095)
Q Consensus 296 IiisGESGAGKTe~~K~il~yLa~~~ 321 (1095)
|+|-|--|||||+-++.+.++|...+
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g 28 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRG 28 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 88999999999999999999998654
No 309
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=73.93 E-value=1.4 Score=50.76 Aligned_cols=27 Identities=22% Similarity=0.366 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.+.|.|+||||||+..|.|.-++
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 356889999999999999999886554
No 310
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=73.91 E-value=2.2 Score=53.38 Aligned_cols=21 Identities=24% Similarity=0.196 Sum_probs=14.9
Q ss_pred HHHHHHHHhcCCCHHHHHHhH
Q 001346 490 EAVTTAAMLMGCSSDELMLAL 510 (1095)
Q Consensus 490 ~~l~~aa~LLgv~~~~L~~~L 510 (1095)
..+..|-..||++.++....+
T Consensus 306 ~~~~~Am~~lG~s~~e~~~i~ 326 (795)
T 1w7j_A 306 VNTRQACTLLGISDSYQMGIF 326 (795)
T ss_dssp HHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHH
Confidence 346677889999987755443
No 311
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=73.86 E-value=1.1 Score=50.71 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=20.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~ 315 (1095)
...+.+.|.|+||||||+..|.|.-
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHT
T ss_pred cCCCEEEEECCCCccHHHHHHHHHc
Confidence 3457889999999999999888743
No 312
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=73.86 E-value=1.5 Score=45.83 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=21.6
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHH
Q 001346 294 QSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~yL 317 (1095)
=-|+|+|.+||||++.++.+.+.+
T Consensus 12 ~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 12 LVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCChHHHHHHHHHHc
Confidence 378999999999999999998855
No 313
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=73.80 E-value=1.4 Score=50.86 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=18.4
Q ss_pred EEEEcCCCCCChhhHHHHHHHH
Q 001346 295 SIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il~y 316 (1095)
-|+|+|.||||||+.+..+.+.
T Consensus 4 ~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHHHH
Confidence 5899999999999887766544
No 314
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.77 E-value=8.1 Score=33.70 Aligned_cols=51 Identities=16% Similarity=0.154 Sum_probs=40.8
Q ss_pred cCCcEEEEEcCCCCEEEEEEEEeeC-CeEEEEecCCeEEEEeCCCcccCCCC
Q 001346 156 KKKLRVWCRLEDGKWESGMIQSTSG-DEAFVLLSNGNVVKVSTGELLPANPD 206 (1095)
Q Consensus 156 ~~~~~vW~~~~~~~~~~~~v~~~~~-~~~~v~~~~g~~~~v~~~~~~~~np~ 206 (1095)
+.|..|=..-.|+.|-+|+|.++++ +.++|...|+..-+|+..++.|..+.
T Consensus 11 kvGd~clA~wsDg~~Y~A~I~~v~~~~~~~V~f~Dyn~e~v~~~~lrplp~~ 62 (74)
T 2equ_A 11 KAGEEVLARWTDCRYYPAKIEAINKEGTFTVQFYDGVIRCLKRMHIKAMPED 62 (74)
T ss_dssp CTTCEEEEECSSSSEEEEEEEEESTTSSEEEEETTSCEEEECGGGEECCCGG
T ss_pred CCCCEEEEECCCCCEEEEEEEEECCCCEEEEEEecCCeEEecHHHCeeCChh
Confidence 3456666665688999999999976 67899998998888998888887654
No 315
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=73.70 E-value=1.6 Score=49.33 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=22.6
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
....|+|.|++|+|||..++.+.+.+
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh
Confidence 34679999999999999999888765
No 316
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=73.70 E-value=1.3 Score=49.50 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~y 316 (1095)
+..|+|+|.+|||||+.++.+.+.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999988777554
No 317
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=73.37 E-value=49 Score=29.28 Aligned_cols=23 Identities=17% Similarity=0.341 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001346 1015 EATLGQKEEENAALREQLQQYDA 1037 (1095)
Q Consensus 1015 e~~l~~leeE~~~Lkeel~~~e~ 1037 (1095)
+.++.+++++|..|..+.+....
T Consensus 26 qmEieELKekN~~L~~e~~e~~~ 48 (81)
T 2jee_A 26 QMEIEELKEKNNSLSQEVQNAQH 48 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444333
No 318
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=73.15 E-value=13 Score=30.78 Aligned_cols=49 Identities=20% Similarity=0.218 Sum_probs=41.6
Q ss_pred cCCcEEEEEcCCCCEEEEEEEEeeCC--eEEEEecCCeEEEEeCCCcccCC
Q 001346 156 KKKLRVWCRLEDGKWESGMIQSTSGD--EAFVLLSNGNVVKVSTGELLPAN 204 (1095)
Q Consensus 156 ~~~~~vW~~~~~~~~~~~~v~~~~~~--~~~v~~~~g~~~~v~~~~~~~~n 204 (1095)
+.+..|-+...|+.|-+|+|++++.. ...|+..||....+...++.+..
T Consensus 5 ~~GedVLarwsDG~fYlGtI~~V~~~~~~clV~F~D~s~~W~~~kdi~~~~ 55 (58)
T 4hcz_A 5 WEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDISPAA 55 (58)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEEETTTTEEEEEETTSCEEEEEGGGEEECS
T ss_pred ccCCEEEEEecCCCEEeEEEEEEecCCCEEEEEEcCCCeEEEEhHHccccc
Confidence 34778999999999999999997554 78999999999999888887654
No 319
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=73.08 E-value=24 Score=30.60 Aligned_cols=49 Identities=14% Similarity=0.184 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001346 1015 EATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQVS 1063 (1095)
Q Consensus 1015 e~~l~~leeE~~~Lkeel~~~e~~~~e~e~k~~~~ee~~~k~~~~Lq~~ 1063 (1095)
..+++.++.+|..|++++..++..+.+-..+-.....++++.++.|.-+
T Consensus 6 ~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~K 54 (72)
T 3cve_A 6 HMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGK 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3444555555555555555555555555555555555555555444444
No 320
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=72.86 E-value=2 Score=47.45 Aligned_cols=29 Identities=24% Similarity=0.250 Sum_probs=23.8
Q ss_pred HHhhCCCceEEEEcCCCCCChhhHHHHHH
Q 001346 286 EMMGDGVNQSIIISGESGAGKTETAKFAM 314 (1095)
Q Consensus 286 ~m~~~~~~QsIiisGESGAGKTe~~K~il 314 (1095)
.+..--..+.+.|.|+||||||+..+.++
T Consensus 158 ~L~~~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 158 ELVDYLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHhhccCcEEEEECCCCCCHHHHHHHHH
Confidence 33444457899999999999999999988
No 321
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=72.81 E-value=1.2 Score=52.48 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=27.2
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHHhcC
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yLa~~~~ 322 (1095)
...+.+.|.|.||||||+.+|.+..|+...+|
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G 167 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYALKFNA 167 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTTHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcccccCC
Confidence 35688999999999999999999998765544
No 322
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=72.57 E-value=36 Score=34.92 Aligned_cols=42 Identities=17% Similarity=0.125 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001346 1018 LGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMAS 1059 (1095)
Q Consensus 1018 l~~leeE~~~Lkeel~~~e~~~~e~e~k~~~~ee~~~k~~~~ 1059 (1095)
+..++.++..|++....+...+.++|.....+|...+....+
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~S 131 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMS 131 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Confidence 344444455555555555544444554444444444443333
No 323
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=72.50 E-value=15 Score=35.43 Aligned_cols=24 Identities=8% Similarity=0.025 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001346 1038 KWLEYEAKMKSMEEMWQKQMASLQ 1061 (1095)
Q Consensus 1038 ~~~e~e~k~~~~ee~~~k~~~~Lq 1061 (1095)
.+..+|..+..+..++..+..+-+
T Consensus 85 ~i~~lE~eL~~~r~em~~ql~EYq 108 (131)
T 3tnu_A 85 MIGSVEEQLAQLRCEMEQQNQEYK 108 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433
No 324
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=72.50 E-value=7.7 Score=39.75 Aligned_cols=63 Identities=14% Similarity=0.190 Sum_probs=38.9
Q ss_pred EEcCCCCCCCCChHHHHHHcccCCCCCchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 248 AVNPFKAVPIYGNKFITAYRQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 248 avNP~k~l~~Y~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
..++|..+++ +++..+.........|..|. ..|+..+... ..+++.+++|+|||.+.-..+-.
T Consensus 12 ~~~~f~~~~l-~~~l~~~l~~~g~~~~~~~Q--~~~i~~~~~~---~~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 12 HSSGFRDFLL-KPELLRAIVDCGFEHPSEVQ--HECIPQAILG---MDVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp --CCSTTSCC-CHHHHHHHHHTTCCCCCHHH--HHHHHHHHTT---CCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCHhhcCC-CHHHHHHHHHCCCCCCCHHH--HHHHHHHhCC---CCEEEECCCCCchhhhhhHHHHH
Confidence 3456777765 45566555554444455444 3555555553 34999999999999876655433
No 325
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=72.33 E-value=68 Score=32.86 Aligned_cols=34 Identities=15% Similarity=0.199 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001346 1015 EATLGQKEEENAALREQLQQYDAKWLEYEAKMKS 1048 (1095)
Q Consensus 1015 e~~l~~leeE~~~Lkeel~~~e~~~~e~e~k~~~ 1048 (1095)
+..+..+.+.++.|+..+..+|..+..+|.....
T Consensus 94 q~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~ 127 (189)
T 2v71_A 94 EDDLSQTRAIKEQLHKYVRELEQANDDLERAKRA 127 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4445555555555555555555555555444443
No 326
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=72.16 E-value=3.1 Score=48.62 Aligned_cols=29 Identities=31% Similarity=0.586 Sum_probs=26.5
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHHHhcC
Q 001346 294 QSIIISGESGAGKTETAKFAMQYLAALGG 322 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~yLa~~~~ 322 (1095)
..++|.|..|+|||+.++.++.+|...+.
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 49999999999999999999999987654
No 327
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=72.15 E-value=1.5 Score=49.48 Aligned_cols=37 Identities=24% Similarity=0.238 Sum_probs=31.8
Q ss_pred HHHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 281 DTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 281 ~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
..|...++.=.+.|.+.|.|.+|||||+..+.|+..+
T Consensus 59 ~~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 59 VRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3677788666788999999999999999999988774
No 328
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=72.06 E-value=16 Score=30.12 Aligned_cols=48 Identities=21% Similarity=0.144 Sum_probs=38.0
Q ss_pred CcEEEEEc-CCCCEEEEEEEEeeC--CeEEEEec-CCeEEEEeCCCcccCCC
Q 001346 158 KLRVWCRL-EDGKWESGMIQSTSG--DEAFVLLS-NGNVVKVSTGELLPANP 205 (1095)
Q Consensus 158 ~~~vW~~~-~~~~~~~~~v~~~~~--~~~~v~~~-~g~~~~v~~~~~~~~np 205 (1095)
|..|=.+- .++.|-.|+|.++.+ +.+.|... -|..-.|+.++|.|.+|
T Consensus 7 G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~f~DYGn~e~v~~~~Lr~~~~ 58 (59)
T 1mhn_A 7 GDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPIC 58 (59)
T ss_dssp TCEEEEECTTTSCEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGCBCTTC
T ss_pred CCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEcCCCEEEEcHHHeeCCCC
Confidence 55666664 478899999999874 77888876 49999999999988765
No 329
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=71.99 E-value=1.7 Score=45.64 Aligned_cols=36 Identities=11% Similarity=0.295 Sum_probs=27.1
Q ss_pred HHHHHHhhCC-CceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 282 TAYNEMMGDG-VNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 282 ~Ay~~m~~~~-~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
.+...++..- +.-+|+|.|..|+|||..+..+.+++
T Consensus 46 ~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 46 GALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3445555432 23479999999999999999998886
No 330
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=71.60 E-value=4.2 Score=41.89 Aligned_cols=61 Identities=18% Similarity=0.329 Sum_probs=35.0
Q ss_pred CCCCCCCCChHHHHHHcccCCCCCchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhH-HHHHHHHH
Q 001346 251 PFKAVPIYGNKFITAYRQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTET-AKFAMQYL 317 (1095)
Q Consensus 251 P~k~l~~Y~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~-~K~il~yL 317 (1095)
.|..+++ ++.............|..|. ..|+..+... ..+++.+++|+|||.+ .-.+++++
T Consensus 15 ~f~~l~l-~~~l~~~l~~~g~~~~~~~Q--~~~i~~~~~~---~~~lv~~pTGsGKT~~~~~~~l~~l 76 (224)
T 1qde_A 15 KFDDMEL-DENLLRGVFGYGFEEPSAIQ--QRAIMPIIEG---HDVLAQAQSGTGKTGTFSIAALQRI 76 (224)
T ss_dssp CGGGGTC-CHHHHHHHHHHTCCSCCHHH--HHHHHHHHTT---CCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ChhhcCC-CHHHHHHHHHCCCCCCcHHH--HHHHHHHhcC---CCEEEECCCCCcHHHHHHHHHHHHH
Confidence 3444443 34444444443333343333 3556666543 4599999999999987 33444544
No 331
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=71.56 E-value=1.5 Score=45.35 Aligned_cols=24 Identities=29% Similarity=0.192 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHH
Q 001346 294 QSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~yL 317 (1095)
-.|.|+|++|||||+.++.+-+.|
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHh
Confidence 479999999999999999887765
No 332
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=71.47 E-value=2.6 Score=44.36 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
++.--|+|.|..|||||+-++.+.+.+-
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 3456788999999999999999988763
No 333
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=71.16 E-value=2.2 Score=49.80 Aligned_cols=38 Identities=24% Similarity=0.278 Sum_probs=32.6
Q ss_pred HHHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 281 DTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 281 ~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
..|...++.=.+.|.+.|.|.||||||+..+.|..++.
T Consensus 145 ~~vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 145 VRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp CHHHHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred ceEEeeeEEecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 35778886677899999999999999999999988753
No 334
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=70.93 E-value=4.1 Score=43.21 Aligned_cols=63 Identities=22% Similarity=0.235 Sum_probs=34.9
Q ss_pred CCCCCCCCChHHHHHHcccCCCCCchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHHHHH-HHHHHH
Q 001346 251 PFKAVPIYGNKFITAYRQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFA-MQYLAA 319 (1095)
Q Consensus 251 P~k~l~~Y~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i-l~yLa~ 319 (1095)
+|..+++ ++.............|..|. ..|+..+... +.+|+.+++|||||.+.-.. ++.+..
T Consensus 44 ~f~~l~l-~~~l~~~l~~~g~~~~~~~Q--~~~i~~i~~~---~~~lv~a~TGsGKT~~~~~~il~~l~~ 107 (249)
T 3ber_A 44 TFKDLGV-TDVLCEACDQLGWTKPTKIQ--IEAIPLALQG---RDIIGLAETGSGKTGAFALPILNALLE 107 (249)
T ss_dssp CTGGGTC-CHHHHHHHHHTTCCSCCHHH--HHHHHHHHTT---CCEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CHHHcCC-CHHHHHHHHHcCCCCCCHHH--HHHHHHHhCC---CCEEEEcCCCCCchhHhHHHHHHHHhc
Confidence 4444443 33344433333333444433 3455555543 56999999999999885443 444443
No 335
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=70.91 E-value=1.2 Score=50.58 Aligned_cols=26 Identities=31% Similarity=0.323 Sum_probs=21.3
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...+.+.|.|+||||||+..|.|.-.
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 34578899999999999999887543
No 336
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=70.86 E-value=2 Score=49.01 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...+|+|.|++|+|||..++.+.+.
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 4679999999999999999888554
No 337
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=70.84 E-value=68 Score=29.88 Aligned_cols=14 Identities=29% Similarity=0.382 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 001346 1024 ENAALREQLQQYDA 1037 (1095)
Q Consensus 1024 E~~~Lkeel~~~e~ 1037 (1095)
.+..|+.+..-|+.
T Consensus 63 ~I~vLkaQv~IY~~ 76 (110)
T 2v4h_A 63 TVPVLKAQADIYKA 76 (110)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444443
No 338
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=70.78 E-value=2 Score=50.71 Aligned_cols=29 Identities=28% Similarity=0.179 Sum_probs=24.4
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHHHhcC
Q 001346 294 QSIIISGESGAGKTETAKFAMQYLAALGG 322 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~yLa~~~~ 322 (1095)
+.+.|.|+||||||+..+.+.-.+..-+|
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G 58 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIPDLT 58 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCCCTT
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence 78999999999999999999877654333
No 339
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=69.78 E-value=2 Score=45.37 Aligned_cols=26 Identities=31% Similarity=0.271 Sum_probs=22.5
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
+-.|.|+|++|||||+.++.+-+.|-
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999998877663
No 340
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=69.63 E-value=2.5 Score=53.41 Aligned_cols=31 Identities=23% Similarity=0.268 Sum_probs=26.5
Q ss_pred hCCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 289 GDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 289 ~~~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
..+....++|.|++|+|||..++.+.+.+..
T Consensus 187 ~~~~~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 187 LRRTKNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp HCSSCCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred hcCCCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3455667999999999999999999998865
No 341
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=69.04 E-value=2.2 Score=50.57 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=22.8
Q ss_pred CCCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 290 DGVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 290 ~~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
-..+..|+|.|++|+|||..++.+-+.
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHH
Confidence 356778999999999999999888554
No 342
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=68.69 E-value=1.7 Score=52.62 Aligned_cols=28 Identities=21% Similarity=0.483 Sum_probs=24.1
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
...+.+.|.|+||||||+..|.++..+.
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~~ 394 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFYD 394 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4568999999999999999999877654
No 343
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=68.50 E-value=4.9 Score=50.29 Aligned_cols=59 Identities=22% Similarity=0.397 Sum_probs=35.3
Q ss_pred EcCCCCCCCCChHHHHHHcccCCCCCchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHHHHH
Q 001346 249 VNPFKAVPIYGNKFITAYRQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFA 313 (1095)
Q Consensus 249 vNP~k~l~~Y~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i 313 (1095)
+|||..+++ ++............|-.++ ..++...+.. ++.++|.|++|||||+....+
T Consensus 71 ~~~f~~~~l-~~~~~~~l~~r~~lP~~~q---~~~i~~~l~~--~~~vii~gpTGSGKTtllp~l 129 (773)
T 2xau_A 71 INPFTGREF-TPKYVDILKIRRELPVHAQ---RDEFLKLYQN--NQIMVFVGETGSGKTTQIPQF 129 (773)
T ss_dssp BCTTTCSBC-CHHHHHHHHHHTTSGGGGG---HHHHHHHHHH--CSEEEEECCTTSSHHHHHHHH
T ss_pred CCCccccCC-CHHHHHHHHHhhcCChHHH---HHHHHHHHhC--CCeEEEECCCCCCHHHHHHHH
Confidence 478887764 4555555444333332222 2333333333 578999999999999965555
No 344
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=68.45 E-value=2.2 Score=48.08 Aligned_cols=35 Identities=26% Similarity=0.422 Sum_probs=26.6
Q ss_pred HHHHHHhhCC--CceEEEEcCCCCCChhhHHHHHHHH
Q 001346 282 TAYNEMMGDG--VNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 282 ~Ay~~m~~~~--~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
.....++..+ ..+.+.|.|++|||||+.+++++-.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3455555433 6689999999999999999887654
No 345
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=68.32 E-value=3 Score=49.78 Aligned_cols=29 Identities=28% Similarity=0.348 Sum_probs=25.5
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
....|++.|-+|||||+.++.+.++|-..
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~ 62 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWI 62 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 45689999999999999999999998654
No 346
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=68.31 E-value=1.6 Score=52.94 Aligned_cols=25 Identities=24% Similarity=0.512 Sum_probs=22.7
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 294 QSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
..++|.|++|+|||+.++.+...+.
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 6999999999999999999988664
No 347
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=68.29 E-value=4.7 Score=47.00 Aligned_cols=26 Identities=31% Similarity=0.495 Sum_probs=23.4
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
...|++.|++|+|||..++.+-+.+-
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 46899999999999999999988874
No 348
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=67.84 E-value=3.2 Score=45.52 Aligned_cols=23 Identities=13% Similarity=0.166 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCChhhHHHHHHHH
Q 001346 294 QSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~y 316 (1095)
+.++|+|+.|.|||+.++.+++.
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHH
Confidence 79999999999999999888765
No 349
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=67.61 E-value=22 Score=30.96 Aligned_cols=44 Identities=23% Similarity=0.234 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001346 1012 LKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQK 1055 (1095)
Q Consensus 1012 ~eae~~l~~leeE~~~Lkeel~~~e~~~~e~e~k~~~~ee~~~k 1055 (1095)
.+.-+.+.++..|.+.|+.++.....-...++.+.+++|+++++
T Consensus 33 ~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElkr 76 (77)
T 2w83_C 33 NDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELRK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445566677777777777777777777777777777776654
No 350
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=67.55 E-value=3.8 Score=47.72 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=26.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
+....|+++|.+|+|||+++-.+..+|+..
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 346789999999999999999999999876
No 351
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=67.52 E-value=6 Score=39.99 Aligned_cols=55 Identities=18% Similarity=0.221 Sum_probs=32.9
Q ss_pred ChHHHHHHcccCCCCCchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHHH-HHHHHHH
Q 001346 259 GNKFITAYRQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAK-FAMQYLA 318 (1095)
Q Consensus 259 ~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K-~il~yLa 318 (1095)
+++............|..|. ..|+..+... +.+++.+++|+|||.+.- .+++++.
T Consensus 9 ~~~l~~~l~~~~~~~~~~~Q--~~~i~~~~~~---~~~li~~~TGsGKT~~~~~~~~~~l~ 64 (207)
T 2gxq_A 9 KPEILEALHGRGLTTPTPIQ--AAALPLALEG---KDLIGQARTGTGKTLAFALPIAERLA 64 (207)
T ss_dssp CHHHHHHHHHTTCCSCCHHH--HHHHHHHHTT---CCEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHcCCCCCCHHH--HHHHHHHcCC---CCEEEECCCCChHHHHHHHHHHHHHh
Confidence 34555555544444444433 4555555543 459999999999998743 3445543
No 352
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=67.41 E-value=61 Score=29.74 Aligned_cols=39 Identities=13% Similarity=0.036 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001346 1002 TALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWL 1040 (1095)
Q Consensus 1002 ~~l~elq~~~~eae~~l~~leeE~~~Lkeel~~~e~~~~ 1040 (1095)
..+..++.+..+.+..+..+...+..+..+++.++..+.
T Consensus 30 ~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ 68 (101)
T 3u1c_A 30 ADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELH 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444444444444444333333
No 353
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=67.39 E-value=2.1 Score=50.96 Aligned_cols=37 Identities=22% Similarity=0.381 Sum_probs=27.2
Q ss_pred HHHHHhhC--CCceEEEEcCCCCCChhhHHHHHH-HHHHH
Q 001346 283 AYNEMMGD--GVNQSIIISGESGAGKTETAKFAM-QYLAA 319 (1095)
Q Consensus 283 Ay~~m~~~--~~~QsIiisGESGAGKTe~~K~il-~yLa~ 319 (1095)
+...+... .+.+.+.|.|+||||||+.++.++ .-+..
T Consensus 27 ~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~ 66 (525)
T 1tf7_A 27 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE 66 (525)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 45555442 367899999999999999999963 44443
No 354
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=67.30 E-value=3.9 Score=43.19 Aligned_cols=28 Identities=25% Similarity=0.166 Sum_probs=22.0
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
+..-++++|+.|+|||+.+-.++.-+..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~ 38 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEY 38 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4578999999999999987666654443
No 355
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=67.02 E-value=71 Score=28.60 Aligned_cols=50 Identities=20% Similarity=0.233 Sum_probs=27.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001346 995 EQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEA 1044 (1095)
Q Consensus 995 e~~~~l~~~l~elq~~~~eae~~l~~leeE~~~Lkeel~~~e~~~~e~e~ 1044 (1095)
++...+..++..++..+...+....++++.+..|-.+...+.....+.+.
T Consensus 14 eEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe 63 (89)
T 3bas_A 14 EEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLED 63 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 44455555666666666666666666666666655555555544333333
No 356
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=66.98 E-value=15 Score=31.98 Aligned_cols=47 Identities=21% Similarity=0.266 Sum_probs=41.0
Q ss_pred CCcEEEEEcCCCCEEEEEEEEee--CCeEEEEecCCeEEEEeCCCcccC
Q 001346 157 KKLRVWCRLEDGKWESGMIQSTS--GDEAFVLLSNGNVVKVSTGELLPA 203 (1095)
Q Consensus 157 ~~~~vW~~~~~~~~~~~~v~~~~--~~~~~v~~~~g~~~~v~~~~~~~~ 203 (1095)
.+.-|-+...||-|-+|+|++++ .+...|..+||....+.-.++.++
T Consensus 29 eGeDVLarwsDGlfYLGTI~kV~~~~e~ClV~F~D~S~~W~~~kdi~~~ 77 (79)
T 2m0o_A 29 EGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDISPA 77 (79)
T ss_dssp TTCEEEBCCTTSCCCEEEEEEEETTTTEEEEEETTSCEEEEETTTBCCC
T ss_pred cCCEEEEEecCCCEEeEEEEEeccCCCEEEEEEcCCCeEEEEeeccccc
Confidence 37789999999999999999875 567899999999999998888765
No 357
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=66.96 E-value=2.2 Score=51.59 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...+.+.|.|+||||||+..|.++..
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45688999999999999999988654
No 358
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=66.95 E-value=2.3 Score=51.59 Aligned_cols=27 Identities=26% Similarity=0.543 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.+.|.|+||||||+..|.++..+
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 456899999999999999999886554
No 359
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=66.84 E-value=3.3 Score=46.99 Aligned_cols=35 Identities=29% Similarity=0.408 Sum_probs=26.4
Q ss_pred hhH-HHHHHHHHHhhCCCceEEEEcCCCCCChhhHH
Q 001346 276 VYA-IADTAYNEMMGDGVNQSIIISGESGAGKTETA 310 (1095)
Q Consensus 276 iya-vA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 310 (1095)
||. ++.......+..+.|-+|+-.|.+|||||.|+
T Consensus 67 Vy~~~~~plv~~~~~~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 67 VYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HHHHHTHHHHHHHHHHCCEEEEEEECCTTSSHHHHH
T ss_pred HHHHHhhhhhhhhccCCceeEEEeeCCCCCCCCEEE
Confidence 454 34444455556688999999999999999886
No 360
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=66.68 E-value=3 Score=43.33 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=22.4
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 294 QSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
.-|+|-|--|||||+.++.+.++|.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3589999999999999999999884
No 361
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=66.68 E-value=2.7 Score=42.49 Aligned_cols=20 Identities=25% Similarity=0.488 Sum_probs=16.9
Q ss_pred EEEEcCCCCCChhhHHHHHH
Q 001346 295 SIIISGESGAGKTETAKFAM 314 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il 314 (1095)
-|+|.|.+|||||+..+.++
T Consensus 7 kv~lvG~~g~GKSTLl~~l~ 26 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFT 26 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHh
Confidence 47899999999998877664
No 362
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=66.63 E-value=2.7 Score=50.40 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=22.9
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
..+.+.|.|+||||||+..|++.-.+.
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~~ 72 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQLI 72 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457899999999999999999876553
No 363
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=66.44 E-value=2.2 Score=47.98 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=19.6
Q ss_pred CceEEEEcCCCCCChhhHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~ 315 (1095)
+..-|+|+|.+|||||+.++.+.+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 445899999999999988776643
No 364
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=66.26 E-value=21 Score=30.41 Aligned_cols=46 Identities=15% Similarity=0.263 Sum_probs=41.4
Q ss_pred CcEEEEEcCCCCEEEEEEEEeeCCeEEEEecCCeEEEEeCCCcccC
Q 001346 158 KLRVWCRLEDGKWESGMIQSTSGDEAFVLLSNGNVVKVSTGELLPA 203 (1095)
Q Consensus 158 ~~~vW~~~~~~~~~~~~v~~~~~~~~~v~~~~g~~~~v~~~~~~~~ 203 (1095)
+..|-+...||.|-+|+|+....+...|+.+|.+...+..+++...
T Consensus 19 geDVL~rw~DG~fYLGtIVd~~~~~ClV~FeD~S~~Wv~~kdi~kl 64 (69)
T 2xk0_A 19 QEDVFIKCNDGRFYLGTIIDQTSDQYLIRFDDQSEQWCEPDKLRKL 64 (69)
T ss_dssp TCEEEEECTTSCEEEEEEEEECSSCEEEEETTCCEEEECTTTEECS
T ss_pred CCeEEEEecCCCEEEEEEEecCCceEEEEecCCcceeeeHHHHHhh
Confidence 7789999999999999999988899999999999999988877654
No 365
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=65.77 E-value=3.4 Score=48.37 Aligned_cols=30 Identities=27% Similarity=0.355 Sum_probs=25.5
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
.....|++.|-+|||||+.++.+.++|-..
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~ 66 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI 66 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 345789999999999999999999988643
No 366
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=65.72 E-value=77 Score=29.08 Aligned_cols=17 Identities=24% Similarity=0.331 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001346 1021 KEEENAALREQLQQYDA 1037 (1095)
Q Consensus 1021 leeE~~~Lkeel~~~e~ 1037 (1095)
.+.++..|+..+..++.
T Consensus 42 ~E~Ei~sL~kk~~~lE~ 58 (101)
T 3u1c_A 42 LEDDIVQLEKQLRVTED 58 (101)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 367
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=65.64 E-value=4.5 Score=45.40 Aligned_cols=65 Identities=18% Similarity=0.340 Sum_probs=38.9
Q ss_pred EcCCCCCCCCChHHHHHHcccCCCCCchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHHHH-HHHHH
Q 001346 249 VNPFKAVPIYGNKFITAYRQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKF-AMQYL 317 (1095)
Q Consensus 249 vNP~k~l~~Y~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~-il~yL 317 (1095)
+.+|..+++ ++...+.........|..+. ..|+..+... .++.+|+.+++|||||.+.-+ +++.+
T Consensus 24 ~~~f~~~~l-~~~l~~~l~~~g~~~~~~~Q--~~~i~~~~~~-~~~~~lv~apTGsGKT~~~~~~~~~~~ 89 (412)
T 3fht_A 24 VKSFEELRL-KPQLLQGVYAMGFNRPSKIQ--ENALPLMLAE-PPQNLIAQSQSGTGKTAAFVLAMLSQV 89 (412)
T ss_dssp SSCTGGGTC-CHHHHHHHHHTTCCSCCHHH--HHHHHHHHSS-SCCCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred cCCHhhCCC-CHHHHHHHHHcCCCCCCHHH--HHHHHHHhcC-CCCeEEEECCCCchHHHHHHHHHHHHh
Confidence 445555554 34444444444444454443 3566666653 457899999999999988643 34444
No 368
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=65.57 E-value=48 Score=35.45 Aligned_cols=55 Identities=13% Similarity=0.200 Sum_probs=23.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001346 998 QALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEM 1052 (1095)
Q Consensus 998 ~~l~~~l~elq~~~~eae~~l~~leeE~~~Lkeel~~~e~~~~e~e~k~~~~ee~ 1052 (1095)
..+...+..++.++.+....+..++++.+.++..+...+..+.+.+........+
T Consensus 100 e~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e 154 (256)
T 3na7_A 100 DIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKN 154 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444333333333333
No 369
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=65.55 E-value=2.2 Score=51.51 Aligned_cols=27 Identities=22% Similarity=0.534 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.+.|.|+||||||+..|.++..+
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 456899999999999999999886543
No 370
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=65.29 E-value=3.4 Score=48.68 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=21.2
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~ 315 (1095)
+.+..|+|.|++|+|||..+|.+..
T Consensus 47 ~~p~gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 47 RMPKGILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp CCCSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998755
No 371
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=65.26 E-value=4.8 Score=48.55 Aligned_cols=29 Identities=28% Similarity=0.581 Sum_probs=26.2
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYLAALG 321 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yLa~~~ 321 (1095)
++.++|+|..|+|||++.+.++.++...+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g 232 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLG 232 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 57899999999999999999999988754
No 372
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=65.23 E-value=2.6 Score=42.51 Aligned_cols=20 Identities=25% Similarity=0.488 Sum_probs=17.1
Q ss_pred EEEEcCCCCCChhhHHHHHH
Q 001346 295 SIIISGESGAGKTETAKFAM 314 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il 314 (1095)
-|+|.|.+|||||+..+.+.
T Consensus 31 kv~lvG~~g~GKSTLl~~l~ 50 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFT 50 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHh
Confidence 57999999999998877654
No 373
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=65.14 E-value=3.9 Score=42.59 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=20.6
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
..+.++|.|++|+|||..+-.++..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 5689999999999999887665543
No 374
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=65.13 E-value=3 Score=48.42 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=20.5
Q ss_pred CCceE--EEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQS--IIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~Qs--IiisGESGAGKTe~~K~il~y 316 (1095)
..... |.|.|+||||||+..+.++..
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 34566 899999999999998887543
No 375
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=65.12 E-value=5 Score=48.73 Aligned_cols=28 Identities=32% Similarity=0.442 Sum_probs=25.7
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
+..++|+|..|+|||++...++..|...
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~~~ 191 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALIQM 191 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999865
No 376
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=64.98 E-value=4.5 Score=44.34 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=21.7
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHH
Q 001346 294 QSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~yL 317 (1095)
+.++|+|++|.|||+.++.+.+.+
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHhc
Confidence 699999999999999999887765
No 377
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=64.91 E-value=8.7 Score=42.14 Aligned_cols=61 Identities=18% Similarity=0.335 Sum_probs=36.6
Q ss_pred CCCCCCCCChHHHHHHcccCCCCCchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 251 PFKAVPIYGNKFITAYRQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 251 P~k~l~~Y~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
+|..+++ ++......+......|..+. ..|+..++..+ +.+++.+++|+|||.+.-..+-.
T Consensus 7 ~f~~~~l-~~~~~~~l~~~g~~~~~~~Q--~~~i~~~~~~~--~~~l~~~~TGsGKT~~~~~~~~~ 67 (367)
T 1hv8_A 7 NFNELNL-SDNILNAIRNKGFEKPTDIQ--MKVIPLFLNDE--YNIVAQARTGSGKTASFAIPLIE 67 (367)
T ss_dssp CGGGSSC-CHHHHHHHHHHTCCSCCHHH--HHHHHHHHHTC--SEEEEECCSSSSHHHHHHHHHHH
T ss_pred chhhcCC-CHHHHHHHHHcCCCCCCHHH--HHHHHHHhCCC--CCEEEECCCCChHHHHHHHHHHH
Confidence 4555553 34444444444444444443 34566666543 67999999999999886554433
No 378
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=64.78 E-value=5.9 Score=50.05 Aligned_cols=25 Identities=40% Similarity=0.453 Sum_probs=22.6
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 294 QSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
.+++|.|++|+|||+.++.+-+++.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 6999999999999999999887764
No 379
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=64.75 E-value=4.4 Score=45.87 Aligned_cols=35 Identities=29% Similarity=0.377 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHH
Q 001346 276 VYAIADTAYNEMMGDGVNQSIIISGESGAGKTETA 310 (1095)
Q Consensus 276 iyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 310 (1095)
||..+..-.-.-.-++.|-||+-.|.+|||||.|+
T Consensus 76 vy~~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 76 VFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHhhHHHHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 55443332222234789999999999999999886
No 380
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=64.70 E-value=1.2e+02 Score=30.21 Aligned_cols=44 Identities=25% Similarity=0.308 Sum_probs=21.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001346 995 EQVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAK 1038 (1095)
Q Consensus 995 e~~~~l~~~l~elq~~~~eae~~l~~leeE~~~Lkeel~~~e~~ 1038 (1095)
+++..|...+.+...+.+.++..+..++.++..|...+.....+
T Consensus 77 eqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek 120 (155)
T 2efr_A 77 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLK 120 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555555544444444333
No 381
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=64.51 E-value=4.6 Score=45.19 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=20.1
Q ss_pred hCCCceEEEEcCCCCCChhhHH
Q 001346 289 GDGVNQSIIISGESGAGKTETA 310 (1095)
Q Consensus 289 ~~~~~QsIiisGESGAGKTe~~ 310 (1095)
-++.|-||+-.|.+|||||.|+
T Consensus 74 l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 74 LEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HTTCCEEEEEECSTTSSHHHHH
T ss_pred hCCCeEEEEEECCCCCCCceEe
Confidence 3689999999999999999886
No 382
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=64.45 E-value=3 Score=48.61 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=22.7
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+|+|.|++|+|||..++.+-+.+
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999887765
No 383
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=64.35 E-value=1.5 Score=47.07 Aligned_cols=27 Identities=26% Similarity=0.251 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
++..-|+|.|-.|||||+.++.+.++|
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 345789999999999999999887776
No 384
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=64.17 E-value=2.1 Score=47.59 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=23.0
Q ss_pred hhCCCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 288 MGDGVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 288 ~~~~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
+.-...+.+.|.|.||||||+..+.++-.+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccc
Confidence 333457899999999999999999886544
No 385
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=64.14 E-value=9.1 Score=34.22 Aligned_cols=43 Identities=14% Similarity=0.206 Sum_probs=35.7
Q ss_pred EEEEEcCCCCEEEEEEEEeeC-CeEEEEecCCeEEEEeCCCcccCCC
Q 001346 160 RVWCRLEDGKWESGMIQSTSG-DEAFVLLSNGNVVKVSTGELLPANP 205 (1095)
Q Consensus 160 ~vW~~~~~~~~~~~~v~~~~~-~~~~v~~~~g~~~~v~~~~~~~~np 205 (1095)
-.| .++.|-+|+|.++.+ +..+|...||.+.+|+..++-|...
T Consensus 30 ArW---~D~~yYPAkI~sV~~~~~YtV~F~DG~~etvk~~~IKp~~~ 73 (85)
T 3qii_A 30 ACW---SDCRFYPAKVTAVNKDGTYTVKFYDGVVQTVKHIHVKAFSK 73 (85)
T ss_dssp EEC---TTSCEEEEEEEEECTTSEEEEEETTSCEEEEEGGGEEECC-
T ss_pred EEe---CCCCEeeEEEEEECCCCeEEEEEeCCCeEEecHHHcccCCh
Confidence 447 788899999999977 4678888899999999999887644
No 386
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=64.00 E-value=61 Score=28.56 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001346 1020 QKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQK 1055 (1095)
Q Consensus 1020 ~leeE~~~Lkeel~~~e~~~~e~e~k~~~~ee~~~k 1055 (1095)
.+.+|+...+..+...+.++.+.+.+.+++..++++
T Consensus 28 ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~ 63 (81)
T 1wt6_A 28 SLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQ 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666666666666666666665555444
No 387
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=63.99 E-value=29 Score=30.33 Aligned_cols=56 Identities=18% Similarity=0.210 Sum_probs=42.8
Q ss_pred ccccCCcEEEEEc-CCCCEEEEEEEEeeC--CeEEEEec-CCeEEEEeCCCcccCCCCcc
Q 001346 153 YFIKKKLRVWCRL-EDGKWESGMIQSTSG--DEAFVLLS-NGNVVKVSTGELLPANPDIL 208 (1095)
Q Consensus 153 ~~~~~~~~vW~~~-~~~~~~~~~v~~~~~--~~~~v~~~-~g~~~~v~~~~~~~~np~~~ 208 (1095)
+..+.+..|=.+- .|+.|-.|+|.++.+ +.+.|..- -|..-.|+.++|.|..+..+
T Consensus 8 ~~~~~G~~c~A~~s~Dg~wYRA~I~~i~~~~~~~~V~fiDYGN~e~V~~~~Lr~l~~~ll 67 (78)
T 2d9t_A 8 KVWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLSNIKPVQTEAW 67 (78)
T ss_dssp CCCCTTCEEEEECTTTCCEEEEEEEEECSSSSEEEEEETTTTEEEEEEGGGEEECCCCCC
T ss_pred cCCCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEcHHHeEeCCHHHh
Confidence 3444566777665 378899999999865 66788764 59999999999998877654
No 388
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=63.86 E-value=6.9 Score=40.65 Aligned_cols=64 Identities=13% Similarity=0.212 Sum_probs=39.3
Q ss_pred cCCCCCCCCChHHHHHHcccCCCCCchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHHHH-HHHHHHH
Q 001346 250 NPFKAVPIYGNKFITAYRQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKF-AMQYLAA 319 (1095)
Q Consensus 250 NP~k~l~~Y~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~-il~yLa~ 319 (1095)
.+|..+++ ++.............|..| =..|+..+... +.+++.+++|+|||.+.-. +++.+..
T Consensus 25 ~~f~~~~l-~~~l~~~l~~~~~~~~~~~--Q~~~i~~~~~~---~~~li~a~TGsGKT~~~~~~~l~~l~~ 89 (236)
T 2pl3_A 25 TRFSDFPL-SKKTLKGLQEAQYRLVTEI--QKQTIGLALQG---KDVLGAAKTGSGKTLAFLVPVLEALYR 89 (236)
T ss_dssp SBGGGSCC-CHHHHHHHHHTTCCBCCHH--HHHHHHHHHTT---CCEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCHhhcCC-CHHHHHHHHHCCCCCCCHH--HHHHHHHHhCC---CCEEEEeCCCCcHHHHHHHHHHHHHHh
Confidence 34555553 4555555554444445443 34566666543 4599999999999998655 4555543
No 389
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=63.44 E-value=3.3 Score=46.96 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=22.1
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
..+.+.|.|.||||||+..+.++-.+
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCCEEEEECCCCccHHHHHHHHhccc
Confidence 46799999999999999998887543
No 390
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=63.25 E-value=6 Score=40.67 Aligned_cols=62 Identities=18% Similarity=0.283 Sum_probs=37.6
Q ss_pred cCCCCCCCCChHHHHHHcccCCCCCchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHHHH-HHHHH
Q 001346 250 NPFKAVPIYGNKFITAYRQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKF-AMQYL 317 (1095)
Q Consensus 250 NP~k~l~~Y~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~-il~yL 317 (1095)
..|..+++ ++...+.........|..|. ..|+..+... +.+++.+++|||||.+.-. +++.+
T Consensus 4 ~~f~~~~l-~~~l~~~l~~~g~~~~~~~Q--~~~i~~~~~~---~~~lv~a~TGsGKT~~~~~~~l~~l 66 (219)
T 1q0u_A 4 TQFTRFPF-QPFIIEAIKTLRFYKPTEIQ--ERIIPGALRG---ESMVGQSQTGTGKTHAYLLPIMEKI 66 (219)
T ss_dssp CCGGGSCC-CHHHHHHHHHTTCCSCCHHH--HHHHHHHHHT---CCEEEECCSSHHHHHHHHHHHHHHC
T ss_pred CCHhhCCC-CHHHHHHHHHCCCCCCCHHH--HHHHHHHhCC---CCEEEECCCCChHHHHHHHHHHHHH
Confidence 45555553 45666666555544454443 3455555543 5689999999999987543 33443
No 391
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=63.23 E-value=4.3 Score=45.77 Aligned_cols=21 Identities=24% Similarity=0.555 Sum_probs=19.6
Q ss_pred CCCceEEEEcCCCCCChhhHH
Q 001346 290 DGVNQSIIISGESGAGKTETA 310 (1095)
Q Consensus 290 ~~~~QsIiisGESGAGKTe~~ 310 (1095)
++.|-||+-.|.+|||||.|+
T Consensus 92 ~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 92 EGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HTCCEEEEEESSTTSSHHHHH
T ss_pred CCCceEEEEecCCCCCCCeEE
Confidence 588999999999999999986
No 392
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=63.23 E-value=59 Score=28.66 Aligned_cols=41 Identities=17% Similarity=0.291 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001346 1015 EATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQK 1055 (1095)
Q Consensus 1015 e~~l~~leeE~~~Lkeel~~~e~~~~e~e~k~~~~ee~~~k 1055 (1095)
..++.+....|..+..+|...+.++.++..+++.+++++..
T Consensus 30 ~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 30 SREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555566666666666666666665555544
No 393
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=63.15 E-value=3.4 Score=50.28 Aligned_cols=28 Identities=21% Similarity=0.245 Sum_probs=23.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
...+.+.|.|+||||||+..|.|.-.+.
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 4578999999999999999998876544
No 394
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=63.14 E-value=4.9 Score=45.31 Aligned_cols=22 Identities=36% Similarity=0.601 Sum_probs=20.1
Q ss_pred hCCCceEEEEcCCCCCChhhHH
Q 001346 289 GDGVNQSIIISGESGAGKTETA 310 (1095)
Q Consensus 289 ~~~~~QsIiisGESGAGKTe~~ 310 (1095)
-++.|-||+-.|.+|||||.|+
T Consensus 80 l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 80 FEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HTTCCEEEEEESSTTSSHHHHH
T ss_pred HhhcCeeEEEecccCCCceEee
Confidence 3688999999999999999986
No 395
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=63.09 E-value=2.6 Score=44.25 Aligned_cols=47 Identities=30% Similarity=0.391 Sum_probs=32.3
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHHHHhcCC---CcchHHHHHh-----hhHHHHHhccc
Q 001346 294 QSIIISGESGAGKTETAKFAMQYLAALGGG---SEGIEYEILQ-----TNHILEAFGNA 344 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~yLa~~~~~---~~~ie~~il~-----snpiLEAFGNA 344 (1095)
=+|-++|-.|||||+.++++-+ +|-. .+.+..++++ -..|.+.||..
T Consensus 10 ~~iglTGgigsGKStv~~~l~~----~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~ 64 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA----RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPA 64 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH----TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGG
T ss_pred eEEEEECCCCCCHHHHHHHHHH----CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChh
Confidence 3699999999999999887644 3321 2234445553 24788899975
No 396
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=63.06 E-value=59 Score=29.59 Aligned_cols=54 Identities=26% Similarity=0.351 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001346 1005 AELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMA 1058 (1095)
Q Consensus 1005 ~elq~~~~eae~~l~~leeE~~~Lkeel~~~e~~~~e~e~k~~~~ee~~~k~~~ 1058 (1095)
.+|-+...+.++.+..+++|+..|+..-...-.+..+++.++..+..+++....
T Consensus 33 qELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~ 86 (104)
T 3s9g_A 33 QELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLT 86 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 456667777778888888888888887777777777777777777666665433
No 397
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=63.05 E-value=3.7 Score=39.52 Aligned_cols=20 Identities=15% Similarity=0.361 Sum_probs=17.0
Q ss_pred EEEEcCCCCCChhhHHHHHH
Q 001346 295 SIIISGESGAGKTETAKFAM 314 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il 314 (1095)
-|++.|.+|+|||+..+.++
T Consensus 7 ~i~v~G~~~~GKssl~~~l~ 26 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYC 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 58999999999998777654
No 398
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=62.93 E-value=3.6 Score=49.28 Aligned_cols=28 Identities=25% Similarity=0.299 Sum_probs=23.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
...+.+-|.|++|||||+..|.+.-.+.
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~~ 50 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEII 50 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 4568899999999999999999876553
No 399
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=62.88 E-value=3.2 Score=45.62 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=20.3
Q ss_pred CceEEEEcCCCCCChhhHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~ 315 (1095)
..+.+.|.|+||||||+..+.+..
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHST
T ss_pred cCCeEEEECCCCCcHHHHHHHhcc
Confidence 457899999999999998887754
No 400
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=62.87 E-value=4 Score=52.48 Aligned_cols=36 Identities=14% Similarity=0.150 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhH--HHHHHHHHHHH
Q 001346 884 QAIIRLQKCFRGYQARSRFRELCNG--VITLQSFARGE 919 (1095)
Q Consensus 884 ~aai~IQa~~Rg~~aRr~y~~lr~a--ai~IQs~~Rg~ 919 (1095)
.++..||+.||++..++++.+.... ...||+.++..
T Consensus 788 ~sl~~IQ~~ir~f~~fr~~ekpp~~~ek~rLeal~~~i 825 (995)
T 2ycu_A 788 DSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSL 825 (995)
T ss_dssp HHHHHHHHHHHHHTTHHHHTHHHHHHHHHHHCSSSCCC
T ss_pred hhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 4678999999999998888765433 56667666543
No 401
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=62.86 E-value=5.6 Score=43.94 Aligned_cols=34 Identities=21% Similarity=0.243 Sum_probs=27.6
Q ss_pred HHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 283 AYNEMMGDGVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 283 Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
..+.++..++..+++++|+.|.|||++++.+.+.
T Consensus 8 ~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 8 TLKRIIEKSEGISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp HHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4455566666889999999999999999988763
No 402
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=62.81 E-value=7.3 Score=43.55 Aligned_cols=43 Identities=21% Similarity=0.199 Sum_probs=32.4
Q ss_pred HHHHHHHHh-hCCCceEEEEcCCCCCChhhHHHHHHHHHHHhcC
Q 001346 280 ADTAYNEMM-GDGVNQSIIISGESGAGKTETAKFAMQYLAALGG 322 (1095)
Q Consensus 280 A~~Ay~~m~-~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~~ 322 (1095)
+..+...+. .......|.|+|.+|||||+.+..+...+...++
T Consensus 42 ~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~ 85 (341)
T 2p67_A 42 STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGL 85 (341)
T ss_dssp HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCC
Confidence 334444433 3466789999999999999999999988876544
No 403
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=62.72 E-value=5.1 Score=45.55 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=20.0
Q ss_pred hCCCceEEEEcCCCCCChhhHH
Q 001346 289 GDGVNQSIIISGESGAGKTETA 310 (1095)
Q Consensus 289 ~~~~~QsIiisGESGAGKTe~~ 310 (1095)
-++.|-||+-.|.+|||||.|+
T Consensus 81 l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 81 LAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HTTCCEEEEEECSTTSSHHHHH
T ss_pred hCCCceEEEeecCCCCCCceEE
Confidence 3688999999999999999885
No 404
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=62.71 E-value=4.4 Score=45.95 Aligned_cols=27 Identities=41% Similarity=0.641 Sum_probs=21.8
Q ss_pred HHHHHhhCCCceEEEEcCCCCCChhhHH
Q 001346 283 AYNEMMGDGVNQSIIISGESGAGKTETA 310 (1095)
Q Consensus 283 Ay~~m~~~~~~QsIiisGESGAGKTe~~ 310 (1095)
.....+ ++.|-||+--|.+|||||.|+
T Consensus 96 lv~~~l-~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQAL-DGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHH-TTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHh-CCCCEEEEEeCCCCCCccEEe
Confidence 333433 688999999999999999885
No 405
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=62.66 E-value=83 Score=29.51 Aligned_cols=31 Identities=16% Similarity=0.161 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001346 1000 LPTALAELQRRVLKAEATLGQKEEENAALRE 1030 (1095)
Q Consensus 1000 l~~~l~elq~~~~eae~~l~~leeE~~~Lke 1030 (1095)
|+.++..++.........+++++-.|+.|..
T Consensus 40 Lq~El~~lr~~~~~l~~~iReLEq~NDDLER 70 (111)
T 2v66_B 40 LEDDLSQTRAIKEQLHKYVRELEQANDDLER 70 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 3444444444444444444444444444333
No 406
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=62.45 E-value=5.2 Score=42.26 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=25.1
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
.+.-.++++|-.|+|||+++..+..+|+
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 4567889999999999999999999988
No 407
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=62.44 E-value=5.2 Score=45.29 Aligned_cols=36 Identities=22% Similarity=0.481 Sum_probs=25.7
Q ss_pred CchhH-HHHHHHHHHhhCCCceEEEEcCCCCCChhhHH
Q 001346 274 PHVYA-IADTAYNEMMGDGVNQSIIISGESGAGKTETA 310 (1095)
Q Consensus 274 PHiya-vA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 310 (1095)
-.||. ++....... -++.|-+|+-.|.+|||||.|+
T Consensus 62 ~~Vy~~~~~plv~~~-l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 62 SDIFDFSIKPTVDDI-LNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHHHHTHHHHHHH-TTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHHHHHH-hCCCcceEEEECCCCCCcceEe
Confidence 34565 333333333 3689999999999999999876
No 408
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=62.42 E-value=6.5 Score=48.38 Aligned_cols=63 Identities=13% Similarity=0.302 Sum_probs=40.2
Q ss_pred CCCCCCCChHHHHHHcccCCCCCchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHHHH-HHHHHHH
Q 001346 252 FKAVPIYGNKFITAYRQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKF-AMQYLAA 319 (1095)
Q Consensus 252 ~k~l~~Y~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~-il~yLa~ 319 (1095)
|..+++ .+.....++.... .+++.+=..|+..+..+ ++.+|++|++|||||..+-. +++.+..
T Consensus 10 ~~~l~l-~~~~~~~l~~~g~--~~l~~~Q~~~i~~~~~~--~~~~lv~apTGsGKT~~~~l~il~~~~~ 73 (715)
T 2va8_A 10 IEDLKL-PSNVIEIIKKRGI--KKLNPPQTEAVKKGLLE--GNRLLLTSPTGSGKTLIAEMGIISFLLK 73 (715)
T ss_dssp GGGSSS-CHHHHHHHHTTSC--CBCCHHHHHHHHTTTTT--TCCEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHcCC-CHHHHHHHHhCCC--CCCCHHHHHHHHHHhcC--CCcEEEEcCCCCcHHHHHHHHHHHHHHH
Confidence 444443 4555555554332 34555566777764433 68899999999999999854 4456553
No 409
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=62.41 E-value=2.1 Score=51.68 Aligned_cols=26 Identities=19% Similarity=0.419 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~y 316 (1095)
...+.+.|.|+||||||+..|.++.+
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcC
Confidence 45689999999999999998877544
No 410
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=62.30 E-value=4.8 Score=45.60 Aligned_cols=22 Identities=41% Similarity=0.622 Sum_probs=20.1
Q ss_pred hCCCceEEEEcCCCCCChhhHH
Q 001346 289 GDGVNQSIIISGESGAGKTETA 310 (1095)
Q Consensus 289 ~~~~~QsIiisGESGAGKTe~~ 310 (1095)
-++.|-||+-.|.+|||||.|+
T Consensus 102 l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 102 LNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp TTTCCEEEEEECCTTSSHHHHH
T ss_pred hCCCceEEEEeCCCCCCceeee
Confidence 4688999999999999999886
No 411
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=62.25 E-value=3.8 Score=50.99 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=21.3
Q ss_pred EEEEcCCCCCChhhHHHHHHHHH
Q 001346 295 SIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il~yL 317 (1095)
+++|.|++|+|||+.++.+-+++
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999887776
No 412
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=62.24 E-value=3.1 Score=48.27 Aligned_cols=25 Identities=28% Similarity=0.520 Sum_probs=19.5
Q ss_pred CCCceEEEEcCCCCCChhhHHHHHH
Q 001346 290 DGVNQSIIISGESGAGKTETAKFAM 314 (1095)
Q Consensus 290 ~~~~QsIiisGESGAGKTe~~K~il 314 (1095)
.+-+=.|+|.|+||||||+..+.++
T Consensus 28 ~~vsf~I~lvG~sGaGKSTLln~L~ 52 (418)
T 2qag_C 28 RGFEFTLMVVGESGLGKSTLINSLF 52 (418)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHT
T ss_pred cCCCEEEEEECCCCCcHHHHHHHHh
Confidence 3445668999999999998777664
No 413
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=62.13 E-value=3.7 Score=48.69 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
+..|+|.|++|+|||..+|.+...+
T Consensus 64 p~GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4459999999999999999887653
No 414
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=62.05 E-value=2.5 Score=51.21 Aligned_cols=27 Identities=19% Similarity=0.389 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
+..+.+.|.|+||||||+..|.++.++
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 457899999999999999999887654
No 415
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=62.00 E-value=3.2 Score=52.24 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
.....|+|.|+||+|||+.++.+...+
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 456789999999999999999886543
No 416
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=61.95 E-value=3.9 Score=47.53 Aligned_cols=29 Identities=34% Similarity=0.555 Sum_probs=25.5
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYLAALG 321 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yLa~~~ 321 (1095)
...|+|.|.+|+|||+++-.+..+++..+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G 127 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRG 127 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 46899999999999999999999988654
No 417
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=61.80 E-value=5.7 Score=49.04 Aligned_cols=63 Identities=13% Similarity=0.204 Sum_probs=40.2
Q ss_pred CCCCCCCChHHHHHHcccCCCCCchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHHH-HHHHHHHH
Q 001346 252 FKAVPIYGNKFITAYRQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAK-FAMQYLAA 319 (1095)
Q Consensus 252 ~k~l~~Y~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K-~il~yLa~ 319 (1095)
|..++ ..+.....++.... .++|.+=..|+.....+ ++.+|++|++|||||..+- .+++.+..
T Consensus 3 f~~l~-l~~~~~~~l~~~g~--~~l~~~Q~~~i~~~~~~--~~~~lv~apTGsGKT~~~~l~il~~~~~ 66 (720)
T 2zj8_A 3 VDELR-VDERIKSTLKERGI--ESFYPPQAEALKSGILE--GKNALISIPTASGKTLIAEIAMVHRILT 66 (720)
T ss_dssp GGGCC-SCHHHHHHHHHTTC--CBCCHHHHHHHTTTGGG--TCEEEEECCGGGCHHHHHHHHHHHHHHH
T ss_pred HhhcC-CCHHHHHHHHHCCC--CCCCHHHHHHHHHHhcC--CCcEEEEcCCccHHHHHHHHHHHHHHHh
Confidence 44455 34556666655333 34455556777763333 6889999999999999884 44566553
No 418
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=61.64 E-value=9.2 Score=42.93 Aligned_cols=61 Identities=18% Similarity=0.306 Sum_probs=32.8
Q ss_pred CCCCCCCCChHHHHHHcccCCCCCchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHHHH-HHHHH
Q 001346 251 PFKAVPIYGNKFITAYRQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKF-AMQYL 317 (1095)
Q Consensus 251 P~k~l~~Y~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~-il~yL 317 (1095)
+|..+++ ++.............|..|. ..|+..+... +.+|+.+++|||||.+.-. +++.+
T Consensus 41 ~f~~~~l-~~~~~~~l~~~~~~~~~~~Q--~~~i~~~~~~---~~~lv~a~TGsGKT~~~~~~~~~~~ 102 (414)
T 3eiq_A 41 SFDDMNL-SESLLRGIYAYGFEKPSAIQ--QRAILPCIKG---YDVIAQAQSGTGKTATFAISILQQI 102 (414)
T ss_dssp CGGGGCC-CHHHHHHHHHTTCCSCCHHH--HHHHHHHHTT---CCEEECCCSCSSSHHHHHHHHHHHC
T ss_pred CHhhCCC-CHHHHHHHHHcCCCCCCHHH--HHHhHHHhCC---CCEEEECCCCCcccHHHHHHHHHHH
Confidence 3444332 33333333333333344433 3555566543 3499999999999987443 34443
No 419
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=61.56 E-value=4.9 Score=45.51 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=29.5
Q ss_pred HHHHHHhh-CC--CceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 282 TAYNEMMG-DG--VNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 282 ~Ay~~m~~-~~--~~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
..+..++. .+ ....++|.|++|+|||+.+..++..++..
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~ 88 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKM 88 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 44555554 33 45789999999999999999888776653
No 420
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=61.54 E-value=3.3 Score=47.75 Aligned_cols=33 Identities=18% Similarity=0.325 Sum_probs=24.9
Q ss_pred HHHHHHhhCC--CceEEEEcCCCCCChhhHHHHHH
Q 001346 282 TAYNEMMGDG--VNQSIIISGESGAGKTETAKFAM 314 (1095)
Q Consensus 282 ~Ay~~m~~~~--~~QsIiisGESGAGKTe~~K~il 314 (1095)
..+..++..+ ....++|.|+||||||+.++.++
T Consensus 165 ~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 165 KNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred hhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHH
Confidence 4455566443 56899999999999999887653
No 421
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=61.53 E-value=6.1 Score=46.08 Aligned_cols=35 Identities=26% Similarity=0.417 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHH
Q 001346 276 VYAIADTAYNEMMGDGVNQSIIISGESGAGKTETA 310 (1095)
Q Consensus 276 iyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 310 (1095)
||.......-.-.-++.|-||+-.|.+|||||.|+
T Consensus 120 Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 120 VYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 55443332222234789999999999999999886
No 422
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=61.40 E-value=8.6 Score=45.61 Aligned_cols=30 Identities=30% Similarity=0.410 Sum_probs=25.3
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yLa~~~ 321 (1095)
....|+|.|..|+|||+++-.+..||+..+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G 129 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKG 129 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 356899999999999999999999998653
No 423
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=61.31 E-value=3.2 Score=41.38 Aligned_cols=20 Identities=35% Similarity=0.614 Sum_probs=16.7
Q ss_pred EEEEcCCCCCChhhHHHHHH
Q 001346 295 SIIISGESGAGKTETAKFAM 314 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il 314 (1095)
-|+|.|.||+|||+..+.++
T Consensus 4 kv~ivG~~gvGKStLl~~l~ 23 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLM 23 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48999999999998777654
No 424
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=61.21 E-value=5.7 Score=45.28 Aligned_cols=35 Identities=31% Similarity=0.638 Sum_probs=24.8
Q ss_pred chhHH-HHHHHHHHhhCCCceEEEEcCCCCCChhhHH
Q 001346 275 HVYAI-ADTAYNEMMGDGVNQSIIISGESGAGKTETA 310 (1095)
Q Consensus 275 Hiyav-A~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 310 (1095)
.||.- +.......+ ++.|-||+-.|.+|||||.|+
T Consensus 83 ~Vy~~~~~plv~~~l-~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 83 DVYSVVVSPLIEEVL-NGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHHHHHHHHHH-HTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHHHHHh-CCceEEEEeecCCCCCcceec
Confidence 35543 333333333 588999999999999999875
No 425
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=61.05 E-value=4.2 Score=38.88 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=16.5
Q ss_pred EEEEcCCCCCChhhHHHHHH
Q 001346 295 SIIISGESGAGKTETAKFAM 314 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il 314 (1095)
-|++.|.+|+|||.....++
T Consensus 3 ki~v~G~~~~GKSsli~~l~ 22 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLL 22 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48999999999998766554
No 426
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=60.76 E-value=5.8 Score=45.12 Aligned_cols=22 Identities=41% Similarity=0.560 Sum_probs=19.9
Q ss_pred hCCCceEEEEcCCCCCChhhHH
Q 001346 289 GDGVNQSIIISGESGAGKTETA 310 (1095)
Q Consensus 289 ~~~~~QsIiisGESGAGKTe~~ 310 (1095)
-++.|-||+-.|.+|||||.|+
T Consensus 86 l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 86 FEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HTTCCEEEEEECSTTSSHHHHH
T ss_pred hcCCeeEEEEeCCCCCCCceEe
Confidence 3688999999999999999875
No 427
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=60.73 E-value=3.8 Score=47.27 Aligned_cols=29 Identities=14% Similarity=0.170 Sum_probs=24.1
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
.++.++|.|.+|||||+..+.++..+...
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~~ 80 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLLR 80 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 46889999999999999988887766543
No 428
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=60.62 E-value=1.1e+02 Score=29.32 Aligned_cols=53 Identities=13% Similarity=0.141 Sum_probs=23.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001346 997 VQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSM 1049 (1095)
Q Consensus 997 ~~~l~~~l~elq~~~~eae~~l~~leeE~~~Lkeel~~~e~~~~e~e~k~~~~ 1049 (1095)
...|+..+..-+..+.+++.....+......|...+..++.+..+.+.....+
T Consensus 50 k~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L 102 (129)
T 2fxo_A 50 KNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAEL 102 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444443
No 429
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=60.60 E-value=4.9 Score=49.93 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHH
Q 001346 294 QSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~yL 317 (1095)
-+++|.|++|+|||+.++.+-+.+
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh
Confidence 589999999999999999886655
No 430
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=60.45 E-value=5.8 Score=44.99 Aligned_cols=22 Identities=41% Similarity=0.462 Sum_probs=19.8
Q ss_pred hCCCceEEEEcCCCCCChhhHH
Q 001346 289 GDGVNQSIIISGESGAGKTETA 310 (1095)
Q Consensus 289 ~~~~~QsIiisGESGAGKTe~~ 310 (1095)
-++.|-||+-.|.+|||||.|+
T Consensus 85 l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 85 IMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HTTCEEEEEEEECTTSSHHHHH
T ss_pred hCCCceEEEEeCCCCCCCceEE
Confidence 3688999999999999999875
No 431
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=60.38 E-value=4.5 Score=41.11 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=19.3
Q ss_pred ceEEEEcCCCCCChhhHHH-HHHHHH
Q 001346 293 NQSIIISGESGAGKTETAK-FAMQYL 317 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K-~il~yL 317 (1095)
.+-++|+|..|||||+.+- .+.+|.
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999984 444443
No 432
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=60.36 E-value=1e+02 Score=28.07 Aligned_cols=49 Identities=16% Similarity=0.287 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001346 999 ALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMK 1047 (1095)
Q Consensus 999 ~l~~~l~elq~~~~eae~~l~~leeE~~~Lkeel~~~e~~~~e~e~k~~ 1047 (1095)
.+..++.++++..+.....+..++.+.+.|..+-..+-........++-
T Consensus 22 ~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~ 70 (96)
T 3q8t_A 22 RLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQL 70 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444333333333333
No 433
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=60.35 E-value=5.1 Score=45.20 Aligned_cols=30 Identities=33% Similarity=0.349 Sum_probs=25.0
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYLAALG 321 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yLa~~~ 321 (1095)
....++|.|++|||||+.+.+++..++..+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g 89 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAG 89 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 567899999999999999999887766543
No 434
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=60.26 E-value=6.5 Score=44.39 Aligned_cols=35 Identities=29% Similarity=0.396 Sum_probs=25.4
Q ss_pred chhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHH
Q 001346 275 HVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETA 310 (1095)
Q Consensus 275 HiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 310 (1095)
.||.-........ -++.|-||+-.|.+|||||.|+
T Consensus 69 ~vf~~v~~lv~~~-l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 69 EIFEEIRQLVQSS-LDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHHHHHHHHHGG-GTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHHHH-HCCcceeEEEeCCCCCCCceEe
Confidence 3554333333333 4789999999999999999997
No 435
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=60.15 E-value=5.2 Score=45.33 Aligned_cols=34 Identities=38% Similarity=0.549 Sum_probs=24.6
Q ss_pred hhHHH-HHHHHHHhhCCCceEEEEcCCCCCChhhHH
Q 001346 276 VYAIA-DTAYNEMMGDGVNQSIIISGESGAGKTETA 310 (1095)
Q Consensus 276 iyavA-~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 310 (1095)
||.-. ....... -++.|-||+-.|.+|||||.|+
T Consensus 87 Vy~~~~~~lv~~~-l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 87 VYETVAKDVVSQA-LDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHTHHHHHHH-HTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHHHHHH-hCCCceEEEEECCCCCCCceEe
Confidence 44433 2333333 3789999999999999999885
No 436
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=60.11 E-value=8.7 Score=43.16 Aligned_cols=43 Identities=19% Similarity=0.204 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhh-CCCceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 278 AIADTAYNEMMG-DGVNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 278 avA~~Ay~~m~~-~~~~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
..+......+.. .+..-.|+|+|..|+|||+.+..+..+|+..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~ 106 (355)
T 3p32_A 63 EQAQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIER 106 (355)
T ss_dssp HHHHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 445555555542 4566789999999999999999998888754
No 437
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=60.10 E-value=4.2 Score=39.70 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=17.3
Q ss_pred eEEEEcCCCCCChhhHHHHHH
Q 001346 294 QSIIISGESGAGKTETAKFAM 314 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il 314 (1095)
--|+|.|.+|+|||+..+.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~ 24 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALT 24 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 358999999999998777653
No 438
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=59.97 E-value=4 Score=47.26 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...|.|.|+||||||+..+.++-.+
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Confidence 4578899999999999999887543
No 439
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=59.90 E-value=3.3 Score=45.63 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=19.9
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~ 315 (1095)
+.+=.|+|.|+||||||+..+.+..
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhC
Confidence 3456789999999999999988754
No 440
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=59.85 E-value=11 Score=42.29 Aligned_cols=60 Identities=15% Similarity=0.258 Sum_probs=36.7
Q ss_pred EcCCCCCCCCChHHHHHHcccCCCCCchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHHHHHH
Q 001346 249 VNPFKAVPIYGNKFITAYRQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAM 314 (1095)
Q Consensus 249 vNP~k~l~~Y~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il 314 (1095)
.++|..+++ +++..+.........|..|. ..|+..+... +.+++.+++|+|||.+.-..+
T Consensus 20 ~~~f~~~~l-~~~l~~~l~~~g~~~~~~~Q--~~~i~~i~~~---~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 20 GNTFEDFYL-KRELLMGIFEAGFEKPSPIQ--EEAIPVAITG---RDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp -CCGGGGCC-CHHHHHHHHHTTCCSCCHHH--HHHHHHHHHT---CCEEEECCTTSCHHHHHHHHH
T ss_pred cCChhhcCC-CHHHHHHHHHCCCCCCCHHH--HHHHHHHhcC---CCEEEECCCCcHHHHHHHHHH
Confidence 346777765 34555555444444455444 3455556543 349999999999998765543
No 441
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=59.78 E-value=3.9 Score=39.00 Aligned_cols=20 Identities=20% Similarity=0.484 Sum_probs=16.5
Q ss_pred EEEEcCCCCCChhhHHHHHH
Q 001346 295 SIIISGESGAGKTETAKFAM 314 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il 314 (1095)
-|++.|.+|+|||+....++
T Consensus 5 ~i~v~G~~~~GKssl~~~l~ 24 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLI 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999998765553
No 442
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=59.69 E-value=4.6 Score=38.65 Aligned_cols=20 Identities=30% Similarity=0.509 Sum_probs=16.5
Q ss_pred EEEEcCCCCCChhhHHHHHH
Q 001346 295 SIIISGESGAGKTETAKFAM 314 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il 314 (1095)
-|++.|.+|+|||+....++
T Consensus 6 ~i~v~G~~~~GKssl~~~l~ 25 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFM 25 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999998765544
No 443
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=59.60 E-value=4.4 Score=48.19 Aligned_cols=35 Identities=26% Similarity=0.349 Sum_probs=26.8
Q ss_pred HHHHhhC--CCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 284 YNEMMGD--GVNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 284 y~~m~~~--~~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
+..++.. .+...++|.|++|||||+.++.++..++
T Consensus 270 ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~ 306 (525)
T 1tf7_A 270 LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENAC 306 (525)
T ss_dssp HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3445443 3567899999999999999998876654
No 444
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=59.58 E-value=4.8 Score=42.54 Aligned_cols=33 Identities=30% Similarity=0.261 Sum_probs=24.4
Q ss_pred HHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 282 TAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 282 ~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
.|+..+...+ .+|+.|++|+|||..+-.++..+
T Consensus 100 ~ai~~~~~~~---~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 100 KALERWLVDK---RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp HHHHHHTTTS---EEEEEESSSTTHHHHHHHHHHHS
T ss_pred HHHHHHHhCC---CEEEEeCCCCCHHHHHHHHHHHc
Confidence 4555555432 38999999999999987776654
No 445
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=59.29 E-value=47 Score=29.66 Aligned_cols=58 Identities=16% Similarity=0.255 Sum_probs=40.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001346 996 QVQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMW 1053 (1095)
Q Consensus 996 ~~~~l~~~l~elq~~~~eae~~l~~leeE~~~Lkeel~~~e~~~~e~e~k~~~~ee~~ 1053 (1095)
++..++..+++.+.+.++.-......+.+...|++.+...-..+.++|.+++++.+++
T Consensus 22 e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl 79 (86)
T 3swk_A 22 ERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEI 79 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666677777666666667777777788887777777777777777766654
No 446
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=58.96 E-value=4.5 Score=40.03 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=17.6
Q ss_pred eEEEEcCCCCCChhhHHHHHH
Q 001346 294 QSIIISGESGAGKTETAKFAM 314 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il 314 (1095)
--|+|.|.+|+|||+..+.++
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~ 28 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALT 28 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 368999999999998877664
No 447
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=58.70 E-value=4.3 Score=49.35 Aligned_cols=27 Identities=30% Similarity=0.335 Sum_probs=22.6
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
..+.+.|.|+||||||+..|++.-.+.
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 457899999999999999998865543
No 448
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=58.70 E-value=5 Score=45.36 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=20.0
Q ss_pred hCCCceEEEEcCCCCCChhhHH
Q 001346 289 GDGVNQSIIISGESGAGKTETA 310 (1095)
Q Consensus 289 ~~~~~QsIiisGESGAGKTe~~ 310 (1095)
-++.|-||+-.|.+|||||.|+
T Consensus 74 l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 74 IQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HTTCCEEEEEEESTTSSHHHHH
T ss_pred HcCCccceeeecCCCCCCCeEE
Confidence 3688999999999999999886
No 449
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=58.55 E-value=5.8 Score=44.82 Aligned_cols=21 Identities=48% Similarity=0.727 Sum_probs=19.5
Q ss_pred CCCceEEEEcCCCCCChhhHH
Q 001346 290 DGVNQSIIISGESGAGKTETA 310 (1095)
Q Consensus 290 ~~~~QsIiisGESGAGKTe~~ 310 (1095)
++.|-||+-.|.+|||||.|+
T Consensus 87 ~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 87 EGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp TTCCEEEEEECSTTSSHHHHH
T ss_pred CCCceeEEeecCCCCCCCEEe
Confidence 688999999999999999885
No 450
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=58.52 E-value=3 Score=46.10 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCChhhHHHHHHHHH
Q 001346 294 QSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il~yL 317 (1095)
..|+|.|++|+|||+.++.+-+.+
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 579999999999999999886654
No 451
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=58.50 E-value=5.7 Score=40.14 Aligned_cols=25 Identities=16% Similarity=0.263 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhh
Q 001346 880 KQVLQAIIRLQKCFRGYQARSRFRE 904 (1095)
Q Consensus 880 ~~~l~aai~IQa~~Rg~~aRr~y~~ 904 (1095)
.+...||+.||++||.|+.|+.++.
T Consensus 127 ~~e~~aA~~IQra~R~~~~r~~~~~ 151 (168)
T 4dck_A 127 KHEEVSAMVIQRAFRRHLLQRSLKH 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccc
Confidence 3456688899999999988776654
No 452
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=58.37 E-value=4.9 Score=40.04 Aligned_cols=21 Identities=38% Similarity=0.528 Sum_probs=17.3
Q ss_pred eEEEEcCCCCCChhhHHHHHH
Q 001346 294 QSIIISGESGAGKTETAKFAM 314 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il 314 (1095)
=.|+|.|.+|+|||.....++
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~ 69 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLT 69 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 379999999999998766554
No 453
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=58.17 E-value=5.1 Score=38.52 Aligned_cols=19 Identities=21% Similarity=0.387 Sum_probs=16.0
Q ss_pred EEEEcCCCCCChhhHHHHH
Q 001346 295 SIIISGESGAGKTETAKFA 313 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~i 313 (1095)
-|++.|.+|+|||.....+
T Consensus 5 ~i~v~G~~~~GKssli~~l 23 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRF 23 (170)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4899999999999876554
No 454
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=58.14 E-value=5.9 Score=45.12 Aligned_cols=21 Identities=43% Similarity=0.677 Sum_probs=19.6
Q ss_pred CCCceEEEEcCCCCCChhhHH
Q 001346 290 DGVNQSIIISGESGAGKTETA 310 (1095)
Q Consensus 290 ~~~~QsIiisGESGAGKTe~~ 310 (1095)
++.|-||+-.|.+|||||.|+
T Consensus 99 ~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 99 QGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp TTCCEEEEEEESTTSSHHHHH
T ss_pred CCCeeeEEeecCCCCCCCEeE
Confidence 688999999999999999886
No 455
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=58.06 E-value=69 Score=27.15 Aligned_cols=59 Identities=17% Similarity=0.196 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 001346 1013 KAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQVSFTCFYTDIIMES 1075 (1095)
Q Consensus 1013 eae~~l~~leeE~~~Lkeel~~~e~~~~e~e~k~~~~ee~~~k~~~~Lq~~l~~~kksla~~~ 1075 (1095)
+...++.++++|+..|..-...+..++..|-.-.+.++... ...+.+..+..+.+..+.
T Consensus 7 eL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~----~~~q~s~~~l~k~~~d~~ 65 (74)
T 2q6q_A 7 ELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQN----LNLQIKISDLEKKLSDAN 65 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhhhHHHHhhccccc
Confidence 34455666677777777777777666665554444444433 335556666665554433
No 456
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=58.01 E-value=9.6 Score=43.76 Aligned_cols=59 Identities=19% Similarity=0.061 Sum_probs=46.7
Q ss_pred EEEEcCCCCCCCCChHHHHHHcccCCCCCchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 246 LIAVNPFKAVPIYGNKFITAYRQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 246 LiavNP~k~l~~Y~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
|-.+||...+++-+ -...+.-+|...|.--++-|-+.|-|.+|+|||+.++.|.+..+.
T Consensus 143 l~Pi~P~~R~~le~---------------e~~~tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~ 201 (427)
T 3l0o_A 143 LTPDYPRERFILET---------------DPKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAE 201 (427)
T ss_dssp SCEECCCSBCCCCC---------------STTCHHHHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCchhhccccc---------------cchhccchhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhh
Confidence 44568887775421 134677899999998899999999999999999999888887664
No 457
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=58.00 E-value=6.1 Score=43.67 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
...+.|+|.|.+|+|||..+..+....
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 457899999999999998777665443
No 458
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=57.94 E-value=5.1 Score=39.11 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=17.8
Q ss_pred ceEEEEcCCCCCChhhHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAM 314 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il 314 (1095)
.=.|+|.|.+|+|||.....++
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~ 29 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYV 29 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHH
Confidence 3468999999999998766554
No 459
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=57.78 E-value=11 Score=42.17 Aligned_cols=29 Identities=28% Similarity=0.403 Sum_probs=25.2
Q ss_pred ceEEEEcCCCCCChhhHHHHHHHHHHHhc
Q 001346 293 NQSIIISGESGAGKTETAKFAMQYLAALG 321 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il~yLa~~~ 321 (1095)
.-.|.|.|.+|||||+....++.++...+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~ 102 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERG 102 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcC
Confidence 56899999999999999999998876543
No 460
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=57.71 E-value=49 Score=29.57 Aligned_cols=19 Identities=21% Similarity=0.480 Sum_probs=8.1
Q ss_pred HHhhHHHHHHHHHHHHHHH
Q 001346 997 VQALPTALAELQRRVLKAE 1015 (1095)
Q Consensus 997 ~~~l~~~l~elq~~~~eae 1015 (1095)
+..+...|+.++.++...+
T Consensus 24 le~le~~Ie~LE~~i~~le 42 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQ 42 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 461
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=57.62 E-value=4.1 Score=48.76 Aligned_cols=27 Identities=30% Similarity=0.357 Sum_probs=22.7
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
..+.+.|.|+||||||+..|.+.-.+.
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 568899999999999999998865543
No 462
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=57.44 E-value=5.3 Score=38.18 Aligned_cols=20 Identities=20% Similarity=0.448 Sum_probs=16.3
Q ss_pred EEEEcCCCCCChhhHHHHHH
Q 001346 295 SIIISGESGAGKTETAKFAM 314 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il 314 (1095)
-|+|.|.+|+|||+....++
T Consensus 5 ~i~v~G~~~~GKSsli~~l~ 24 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999998755443
No 463
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=57.25 E-value=7.5 Score=45.15 Aligned_cols=32 Identities=31% Similarity=0.418 Sum_probs=23.8
Q ss_pred HHHHHHHHHhhCCCceEEEEcCCCCCChhhHHH
Q 001346 279 IADTAYNEMMGDGVNQSIIISGESGAGKTETAK 311 (1095)
Q Consensus 279 vA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K 311 (1095)
+=..|+..++. +.++.+|+.|++|||||.+.-
T Consensus 118 ~Q~~ai~~il~-~~~~~~l~~a~TGsGKT~~~~ 149 (479)
T 3fmp_B 118 IQENALPLMLA-EPPQNLIAQSQSGTGKTAAFV 149 (479)
T ss_dssp HHHHHHHHHTS-BSCCEEEEECCSSSSHHHHHH
T ss_pred HHHHHHHHHHc-CCCCcEEEEcCCCCchhHHHH
Confidence 33456666665 356889999999999998843
No 464
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=57.24 E-value=5.3 Score=46.08 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=19.9
Q ss_pred hCCCceEEEEcCCCCCChhhHH
Q 001346 289 GDGVNQSIIISGESGAGKTETA 310 (1095)
Q Consensus 289 ~~~~~QsIiisGESGAGKTe~~ 310 (1095)
-++.|-||+-.|.+|||||.|+
T Consensus 151 l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 151 FEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HTTCEEEEEEEESTTSSHHHHH
T ss_pred hcCCceeEEeecCCCCCCCeEe
Confidence 3688999999999999999886
No 465
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=57.18 E-value=11 Score=40.23 Aligned_cols=36 Identities=11% Similarity=0.346 Sum_probs=24.8
Q ss_pred HHHHHHHhhCCCceEEEEcCCCCCChhhHHHHH-HHHHHH
Q 001346 281 DTAYNEMMGDGVNQSIIISGESGAGKTETAKFA-MQYLAA 319 (1095)
Q Consensus 281 ~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i-l~yLa~ 319 (1095)
..|+..++.. +.+|+.+.+|||||.+.-+. ++.+..
T Consensus 82 ~~~i~~~~~~---~~~lv~a~TGsGKT~~~~l~~l~~l~~ 118 (262)
T 3ly5_A 82 HKSIRPLLEG---RDLLAAAKTGSGKTLAFLIPAVELIVK 118 (262)
T ss_dssp HHHHHHHHHT---CCCEECCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC---CcEEEEccCCCCchHHHHHHHHHHHHh
Confidence 4555555554 34999999999999986654 445543
No 466
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=57.17 E-value=99 Score=27.65 Aligned_cols=56 Identities=20% Similarity=0.131 Sum_probs=25.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001346 997 VQALPTALAELQRRVLKAEATLGQKEEENAALREQLQQYDAKWLEYEAKMKSMEEM 1052 (1095)
Q Consensus 997 ~~~l~~~l~elq~~~~eae~~l~~leeE~~~Lkeel~~~e~~~~e~e~k~~~~ee~ 1052 (1095)
...+...+........+.+.....+..+...|..++...+.+...+..+...++..
T Consensus 23 l~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~ 78 (89)
T 3bas_A 23 MDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENE 78 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444433333333
No 467
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=56.85 E-value=5.5 Score=38.21 Aligned_cols=20 Identities=20% Similarity=0.443 Sum_probs=16.5
Q ss_pred EEEEcCCCCCChhhHHHHHH
Q 001346 295 SIIISGESGAGKTETAKFAM 314 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~il 314 (1095)
-|+|.|.+|+|||.....++
T Consensus 5 ki~v~G~~~~GKssli~~l~ 24 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999998766554
No 468
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=56.64 E-value=5.5 Score=38.43 Aligned_cols=19 Identities=26% Similarity=0.344 Sum_probs=16.0
Q ss_pred EEEEcCCCCCChhhHHHHH
Q 001346 295 SIIISGESGAGKTETAKFA 313 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~i 313 (1095)
-|++.|.+|+|||+....+
T Consensus 8 ~i~v~G~~~~GKssli~~l 26 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRY 26 (170)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 5899999999999876554
No 469
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=56.58 E-value=6 Score=44.34 Aligned_cols=34 Identities=18% Similarity=0.232 Sum_probs=24.5
Q ss_pred HHHHHHhhC--CCceEEEEcCCCCCChhhHHHHHHH
Q 001346 282 TAYNEMMGD--GVNQSIIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 282 ~Ay~~m~~~--~~~QsIiisGESGAGKTe~~K~il~ 315 (1095)
..+..++.. .....++|.|++|+|||..+..+..
T Consensus 109 ~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 109 QEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp HHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred hhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344555543 3567899999999999988776643
No 470
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=56.52 E-value=14 Score=38.72 Aligned_cols=64 Identities=13% Similarity=0.228 Sum_probs=38.7
Q ss_pred EcCCCCCCCCChHHHHHHcccCCCCCchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHHHHH-HHHHH
Q 001346 249 VNPFKAVPIYGNKFITAYRQKVMDSPHVYAIADTAYNEMMGDGVNQSIIISGESGAGKTETAKFA-MQYLA 318 (1095)
Q Consensus 249 vNP~k~l~~Y~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i-l~yLa 318 (1095)
+.+|..+++ ++.............|.. +=..|+..+... +.+++.+.+|||||.+.-+. +.++.
T Consensus 28 ~~~f~~~~l-~~~l~~~l~~~g~~~~~~--~Q~~~i~~~~~g---~~~l~~apTGsGKT~~~~l~~l~~l~ 92 (242)
T 3fe2_A 28 VLNFYEANF-PANVMDVIARQNFTEPTA--IQAQGWPVALSG---LDMVGVAQTGSGKTLSYLLPAIVHIN 92 (242)
T ss_dssp CSSTTTTTC-CHHHHHHHHTTTCCSCCH--HHHHHHHHHHHT---CCEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred cCCHhhcCC-CHHHHHHHHHCCCCCCCH--HHHHHHHHHhCC---CCEEEECCCcCHHHHHHHHHHHHHHH
Confidence 344444443 456666665544444443 334556666543 46999999999999985543 45554
No 471
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=56.43 E-value=5.6 Score=38.29 Aligned_cols=19 Identities=21% Similarity=0.379 Sum_probs=16.2
Q ss_pred EEEEcCCCCCChhhHHHHH
Q 001346 295 SIIISGESGAGKTETAKFA 313 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~i 313 (1095)
-|++.|.+|+|||...+.+
T Consensus 8 ~i~v~G~~~~GKSsli~~l 26 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRF 26 (170)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 5899999999999876655
No 472
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=56.35 E-value=4.3 Score=49.35 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=18.5
Q ss_pred EEEcCCCCCChhhHHHHHHHH
Q 001346 296 IIISGESGAGKTETAKFAMQY 316 (1095)
Q Consensus 296 IiisGESGAGKTe~~K~il~y 316 (1095)
|.|.|+||||||+..+.|.-.
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSC
T ss_pred EEEECCCCChHHHHHHHHhCC
Confidence 999999999999998888643
No 473
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=56.31 E-value=54 Score=30.81 Aligned_cols=48 Identities=21% Similarity=0.107 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001346 1024 ENAALREQLQQYDAKWLEYEAKMKSMEEMWQKQMASLQVSFTCFYTDI 1071 (1095)
Q Consensus 1024 E~~~Lkeel~~~e~~~~e~e~k~~~~ee~~~k~~~~Lq~~l~~~kksl 1071 (1095)
++..|..+.+..|..+.++...........+.++..|..........+
T Consensus 46 qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V~~eL 93 (112)
T 1x79_B 46 QISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSREQVSEEL 93 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666666666666666666666666666666666655554443
No 474
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=56.24 E-value=7.3 Score=43.95 Aligned_cols=22 Identities=45% Similarity=0.579 Sum_probs=20.2
Q ss_pred hCCCceEEEEcCCCCCChhhHH
Q 001346 289 GDGVNQSIIISGESGAGKTETA 310 (1095)
Q Consensus 289 ~~~~~QsIiisGESGAGKTe~~ 310 (1095)
-++.|-||+-.|.+|||||.|+
T Consensus 81 l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 81 LDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp GGTCCEEEEEECCTTSSHHHHH
T ss_pred cCCceeEEEEECCCCCCCcEec
Confidence 3688999999999999999987
No 475
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=56.22 E-value=6.9 Score=49.91 Aligned_cols=30 Identities=23% Similarity=0.347 Sum_probs=24.0
Q ss_pred CceEEEEcCCCCCChhhHHHHH--HHHHHHhc
Q 001346 292 VNQSIIISGESGAGKTETAKFA--MQYLAALG 321 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~i--l~yLa~~~ 321 (1095)
..+.++|+|.+|||||+..|.+ +.+++..|
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G 692 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQTGVIVLMAQIG 692 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHhcC
Confidence 4688999999999999999987 45555443
No 476
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=56.18 E-value=5.6 Score=38.71 Aligned_cols=19 Identities=26% Similarity=0.513 Sum_probs=16.2
Q ss_pred EEEEcCCCCCChhhHHHHH
Q 001346 295 SIIISGESGAGKTETAKFA 313 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~i 313 (1095)
-|+|.|.+|+|||.....+
T Consensus 9 ~i~v~G~~~~GKSsli~~l 27 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRY 27 (177)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999876655
No 477
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=56.15 E-value=3.3 Score=42.01 Aligned_cols=25 Identities=20% Similarity=0.314 Sum_probs=20.0
Q ss_pred CCCceEEEEcCCCCCChhhHHHHHH
Q 001346 290 DGVNQSIIISGESGAGKTETAKFAM 314 (1095)
Q Consensus 290 ~~~~QsIiisGESGAGKTe~~K~il 314 (1095)
-.....|+|.|.+|||||+..+.++
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHh
Confidence 3455789999999999998877653
No 478
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=56.12 E-value=4.8 Score=40.80 Aligned_cols=35 Identities=23% Similarity=0.269 Sum_probs=26.1
Q ss_pred HHHHHHHhhCCCceEEEEcCCCCCChhhHHHHHHHHHH
Q 001346 281 DTAYNEMMGDGVNQSIIISGESGAGKTETAKFAMQYLA 318 (1095)
Q Consensus 281 ~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa 318 (1095)
..|+..++. ++.+++.+++|+|||.++-.++..+.
T Consensus 39 ~~~i~~~~~---~~~~li~~~tGsGKT~~~~~~~~~~~ 73 (216)
T 3b6e_A 39 MEVAQPALE---GKNIIICLPTGSGKTRVAVYIAKDHL 73 (216)
T ss_dssp HHHHHHHHT---TCCEEEECSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc---CCCEEEEcCCCCCHHHHHHHHHHHHH
Confidence 355555554 35699999999999999887776554
No 479
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=55.95 E-value=9.8 Score=39.73 Aligned_cols=27 Identities=30% Similarity=0.345 Sum_probs=19.6
Q ss_pred HHHHHHhhCCCceEEEEcCCCCCChhhHHH
Q 001346 282 TAYNEMMGDGVNQSIIISGESGAGKTETAK 311 (1095)
Q Consensus 282 ~Ay~~m~~~~~~QsIiisGESGAGKTe~~K 311 (1095)
.|+..++.. +.+++.+++|||||.+.-
T Consensus 59 ~ai~~i~~~---~~~li~apTGsGKT~~~~ 85 (237)
T 3bor_A 59 RAIIPCIKG---YDVIAQAQSGTGKTATFA 85 (237)
T ss_dssp HHHHHHHTT---CCEEECCCSSHHHHHHHH
T ss_pred HHHHHHhCC---CCEEEECCCCCcHHHHHH
Confidence 455555543 449999999999998743
No 480
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=55.87 E-value=5.5 Score=38.36 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=16.9
Q ss_pred eEEEEcCCCCCChhhHHHHHH
Q 001346 294 QSIIISGESGAGKTETAKFAM 314 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il 314 (1095)
=-|++.|.+|+|||.....++
T Consensus 4 ~~i~v~G~~~~GKssli~~l~ 24 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFV 24 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 358999999999998766553
No 481
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=55.70 E-value=7.8 Score=43.82 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=24.7
Q ss_pred CceEEEEcCCCCCChhhHHHHHHHHHHHh
Q 001346 292 VNQSIIISGESGAGKTETAKFAMQYLAAL 320 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il~yLa~~ 320 (1095)
....|+|.|++|+|||+.+..+...++..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~ 90 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE 90 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 45789999999999999998888776654
No 482
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=55.65 E-value=6.7 Score=44.94 Aligned_cols=21 Identities=33% Similarity=0.593 Sum_probs=19.5
Q ss_pred CCCceEEEEcCCCCCChhhHH
Q 001346 290 DGVNQSIIISGESGAGKTETA 310 (1095)
Q Consensus 290 ~~~~QsIiisGESGAGKTe~~ 310 (1095)
++.|-||+-.|.+|||||.|+
T Consensus 132 ~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 132 EGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp TTCEEEEEEESCTTSSHHHHH
T ss_pred cCCceEEEEecCCCCCCCeEe
Confidence 688999999999999999885
No 483
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=55.60 E-value=3.5 Score=50.66 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=20.3
Q ss_pred CceEEEEcCCCCCChhhHHHHHH
Q 001346 292 VNQSIIISGESGAGKTETAKFAM 314 (1095)
Q Consensus 292 ~~QsIiisGESGAGKTe~~K~il 314 (1095)
..+.+.|.|+||||||+..+.++
T Consensus 347 ~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 347 LGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TTSEEEEECSTTSSHHHHHTTTH
T ss_pred CCCEEEEEeeCCCCHHHHHHHHH
Confidence 46888999999999999998775
No 484
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=55.47 E-value=30 Score=29.51 Aligned_cols=40 Identities=15% Similarity=0.146 Sum_probs=34.0
Q ss_pred CCCCEEEEEEEEeeCC-eEEEEecCCeEEEEeCCCcccCCC
Q 001346 166 EDGKWESGMIQSTSGD-EAFVLLSNGNVVKVSTGELLPANP 205 (1095)
Q Consensus 166 ~~~~~~~~~v~~~~~~-~~~v~~~~g~~~~v~~~~~~~~np 205 (1095)
.++.|-+|+|.++.++ ..+|...+|.+.+|...++-|...
T Consensus 18 ~D~~yYpA~I~si~~~~~Y~V~F~dG~~etvk~~~ikp~~~ 58 (67)
T 3p8d_A 18 SDCRFYPAKVTAVNKDGTYTVKFYDGVVQTVKHIHVKAFSK 58 (67)
T ss_dssp TTSCEEEEEEEEECTTSEEEEEETTSCEEEEEGGGEEECC-
T ss_pred CCCCEeeEEEEEECCCCeEEEEEeCCceEEEeHHHcccCCc
Confidence 7888999999999774 678888899999999999887654
No 485
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=55.40 E-value=5.4 Score=41.79 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=18.3
Q ss_pred ceEEEEcCCCCCChhhHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAM 314 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il 314 (1095)
.=-|+|.|.+|+|||+....++
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~ 50 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSIL 50 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHc
Confidence 3469999999999998877665
No 486
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=55.38 E-value=5.5 Score=41.24 Aligned_cols=18 Identities=33% Similarity=0.453 Sum_probs=14.9
Q ss_pred EEEEcCCCCCChhhHHHH
Q 001346 295 SIIISGESGAGKTETAKF 312 (1095)
Q Consensus 295 sIiisGESGAGKTe~~K~ 312 (1095)
-++|+|..|||||..+..
T Consensus 7 i~l~tG~pGsGKT~~a~~ 24 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVS 24 (199)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHH
Confidence 478999999999987643
No 487
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=55.36 E-value=5 Score=39.07 Aligned_cols=21 Identities=19% Similarity=0.450 Sum_probs=17.2
Q ss_pred eEEEEcCCCCCChhhHHHHHH
Q 001346 294 QSIIISGESGAGKTETAKFAM 314 (1095)
Q Consensus 294 QsIiisGESGAGKTe~~K~il 314 (1095)
=-|+|.|.+|+|||.....++
T Consensus 10 ~~i~v~G~~~~GKssli~~l~ 30 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFI 30 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468999999999998766554
No 488
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=54.96 E-value=7 Score=45.53 Aligned_cols=29 Identities=28% Similarity=0.262 Sum_probs=24.3
Q ss_pred CCceEEEEcCCCCCChhhHHHHHHHHHHH
Q 001346 291 GVNQSIIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 291 ~~~QsIiisGESGAGKTe~~K~il~yLa~ 319 (1095)
.....|+|.|.+|+|||+.+..+...++.
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~ 229 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVAT 229 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35689999999999999998888776653
No 489
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=54.94 E-value=36 Score=34.72 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001346 1020 QKEEENAALREQLQQYDA 1037 (1095)
Q Consensus 1020 ~leeE~~~Lkeel~~~e~ 1037 (1095)
.++.|++.|+++++..+.
T Consensus 38 ~k~~ei~~L~~ql~sl~~ 55 (190)
T 4emc_A 38 TKATEIKQLQKQIDSLNA 55 (190)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333333333333333333
No 490
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=54.75 E-value=1.3e+02 Score=28.24 Aligned_cols=17 Identities=29% Similarity=0.378 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001346 1018 LGQKEEENAALREQLQQ 1034 (1095)
Q Consensus 1018 l~~leeE~~~Lkeel~~ 1034 (1095)
+.+++.|+..|+..|+.
T Consensus 73 vqeLqgEI~~Lnq~Lq~ 89 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQD 89 (121)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444333333
No 491
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=54.72 E-value=3 Score=44.27 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=19.7
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHH
Q 001346 296 IIISGESGAGKTETAKFAMQYLAA 319 (1095)
Q Consensus 296 IiisGESGAGKTe~~K~il~yLa~ 319 (1095)
+.|.|+||||||+..+.|.-.+..
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~~ 53 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALIP 53 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhccccc
Confidence 458899999999999988766543
No 492
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=54.66 E-value=6 Score=40.32 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=17.9
Q ss_pred ceEEEEcCCCCCChhhHHHHHH
Q 001346 293 NQSIIISGESGAGKTETAKFAM 314 (1095)
Q Consensus 293 ~QsIiisGESGAGKTe~~K~il 314 (1095)
.-.|+|.|.+|+|||.....+.
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~ 33 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLT 33 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4479999999999998766554
No 493
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=54.61 E-value=13 Score=40.40 Aligned_cols=36 Identities=17% Similarity=0.212 Sum_probs=26.3
Q ss_pred HHHHHHhhCC--CceEEEEcCCCCCChhhHHHHHHHHH
Q 001346 282 TAYNEMMGDG--VNQSIIISGESGAGKTETAKFAMQYL 317 (1095)
Q Consensus 282 ~Ay~~m~~~~--~~QsIiisGESGAGKTe~~K~il~yL 317 (1095)
.+....+... +.-+|+|.|..|+|||..++.+.+++
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 3344444433 24579999999999999999887763
No 494
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=54.60 E-value=5.6 Score=39.95 Aligned_cols=33 Identities=15% Similarity=0.099 Sum_probs=17.5
Q ss_pred HHHHHHhhCCCceEEEEcCCCCCChhhHHHHHH
Q 001346 282 TAYNEMMGDGVNQSIIISGESGAGKTETAKFAM 314 (1095)
Q Consensus 282 ~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il 314 (1095)
++++.+-...+.=-|++.|.+|+|||...+.+.
T Consensus 12 ~~l~~~~~~~~~~ki~~vG~~~vGKSsli~~l~ 44 (190)
T 1m2o_B 12 DVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLK 44 (190)
T ss_dssp ------------CEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHHhhccCCccEEEEECCCCCCHHHHHHHHh
Confidence 333433333334479999999999998766554
No 495
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=54.55 E-value=6.4 Score=39.98 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=17.2
Q ss_pred CCCceEEEEcCCCCCChhhHHHHHH
Q 001346 290 DGVNQSIIISGESGAGKTETAKFAM 314 (1095)
Q Consensus 290 ~~~~QsIiisGESGAGKTe~~K~il 314 (1095)
..+.=-|+|.|.+|+|||.....++
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~ 28 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLL 28 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHh
Confidence 3445579999999999997665543
No 496
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=54.53 E-value=7 Score=43.80 Aligned_cols=34 Identities=38% Similarity=0.445 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhhCCCceEEEEcCCCCCChhhHH
Q 001346 276 VYAIADTAYNEMMGDGVNQSIIISGESGAGKTETA 310 (1095)
Q Consensus 276 iyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 310 (1095)
||.-. ...-.-.-++.|-||+-.|.+|||||.|+
T Consensus 65 Vy~~v-~~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 65 VFQEV-QALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHTTT-HHHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHH-HHHHHHHhCCCEEEEEeECCCCCCCcEEE
No 497
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.31 E-value=67 Score=27.27 Aligned_cols=52 Identities=19% Similarity=0.222 Sum_probs=0.0
Q ss_pred ccCCcEEEEEcCCCCEEEEEEEEee--CCeEEEEecCCeEEEEeCCCcccCCCC
Q 001346 155 IKKKLRVWCRLEDGKWESGMIQSTS--GDEAFVLLSNGNVVKVSTGELLPANPD 206 (1095)
Q Consensus 155 ~~~~~~vW~~~~~~~~~~~~v~~~~--~~~~~v~~~~g~~~~v~~~~~~~~np~ 206 (1095)
.+.+.-|-+...|+-|-+|+|++++ .....|..+|+....+.-.|+.+...+
T Consensus 10 f~eGqdVLarWsDGlfYlGtV~kV~~~~~~ClV~FeD~s~~wv~~kdi~~~~~~ 63 (68)
T 2e5p_A 10 LWEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDISPAALS 63 (68)
T ss_dssp CCTTCEEEEECTTSSEEEEEEEEEETTTTEEEEEETTTEEEEEETTTEECCCSS
T ss_pred cccCCEEEEEecCCcEEEeEEEEEecCCcEEEEEEccCCeeeeeeecccccccC
No 498
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=54.11 E-value=6.4 Score=38.21 Aligned_cols=20 Identities=30% Similarity=0.380 Sum_probs=0.0
Q ss_pred EEEcCCCCCChhhHHHHHHH
Q 001346 296 IIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 296 IiisGESGAGKTe~~K~il~ 315 (1095)
|+|.|.+|+|||+..+.++.
T Consensus 18 i~v~G~~~~GKSsli~~l~~ 37 (179)
T 1z0f_A 18 YIIIGDMGVGKSCLLHQFTE 37 (179)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
No 499
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=54.06 E-value=6.4 Score=38.53 Aligned_cols=20 Identities=30% Similarity=0.479 Sum_probs=0.0
Q ss_pred EEEcCCCCCChhhHHHHHHH
Q 001346 296 IIISGESGAGKTETAKFAMQ 315 (1095)
Q Consensus 296 IiisGESGAGKTe~~K~il~ 315 (1095)
|+|.|.+|+|||.....++.
T Consensus 21 i~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 21 VIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhh
No 500
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=53.85 E-value=10 Score=41.63 Aligned_cols=48 Identities=19% Similarity=0.152 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHHHh-------hCCCceEEEEcCC-CCCChhhHHHHHHHHHHHhc
Q 001346 274 PHVYAIADTAYNEMM-------GDGVNQSIIISGE-SGAGKTETAKFAMQYLAALG 321 (1095)
Q Consensus 274 PHiyavA~~Ay~~m~-------~~~~~QsIiisGE-SGAGKTe~~K~il~yLa~~~ 321 (1095)
++....+.+||+.+. ..+..+.|.|+|. .|.|||+++-.+-..|+..+
T Consensus 78 ~~~~~~~~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G 133 (299)
T 3cio_A 78 DNPADSAVEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSD 133 (299)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHTSSCSCCEEEEEESSSSSCHHHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHHHHHHhccCCCCeEEEEECCCCCCChHHHHHHHHHHHHhCC
Done!