BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001348
(1094 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 6 VLPVFYHVDPSDVRKQTGRVGDAFVVHEKQFREMPEKVQKWRAVLTEASNLSGWDSKKIR 65
V+P+FY V+P+ VR QTG + + F H RE PEKV KWR LT + LSG S
Sbjct: 98 VMPIFYGVEPNHVRWQTGVLAEQFKKHAS--REDPEKVLKWRQALTNFAQLSGDCSGD-- 153
Query: 66 PEAKLVDEIVKDILKKLNYFSV 87
++KLVD+I +I K ++
Sbjct: 154 DDSKLVDKIANEISNKKTIYAT 175
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 6 VLPVFYHVDPSDVRKQTGRVGDAFVVHEKQFREMPEKVQKWRAVLTEASNLSGWDSKKIR 65
+LP+FY VDPSDVR QTG AF H +F + +Q W+ L + +L GW K
Sbjct: 126 ILPIFYMVDPSDVRHQTGCYKKAFRKHANKFD--GQTIQNWKDALKKVGDLKGWHIGKND 183
Query: 66 PEAKLVDEIVKDILKKLN 83
+ + D++ DI ++
Sbjct: 184 KQGAIADKVSADIWSHIS 201
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 38/99 (38%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 677 NLPENLGNLKSLKMLCANESAISQLPSSITNLNELQVVWCSGCRGLI-LPPSFSGLSYLT 735
+LP ++ NL++LK L S +S L +I +L +L+ + GC L PP F G + L
Sbjct: 197 SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256
Query: 736 ELDLS-CCNLIEIPQDIGCLSLLRSLDLRKN-NFEYLPA 772
L L C NL+ +P DI L+ L LDLR N LP+
Sbjct: 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 41/155 (26%), Positives = 59/155 (38%), Gaps = 13/155 (8%)
Query: 675 LDNLPENLGNLKSLKMLCANESAISQLPSSITNLNELQVVWCSGCRGLI-LPPSFS---- 729
L LP+ L+ L + + LP+SI +LN L+ + C L LP +
Sbjct: 116 LXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDA 175
Query: 730 -----GLSYLTELDLSCCNLIEIPQDIGCLSLLRSLDLRKNNFEYLPAXXXXXXXXXXXX 784
GL L L L + +P I L L+SL +R + L
Sbjct: 176 SGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELD 235
Query: 785 XXCCNMLQSLPEL---PLQLKFLQAKDCKQLQSLP 816
C L++ P + LK L KDC L +LP
Sbjct: 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP 270
Score = 33.5 bits (75), Expect = 0.61, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 569 NVRELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILESIXXXXXXXXXXXXXXXXXXXXX 628
N++ L +R +P+ + +I L KLE LDL CT L +
Sbjct: 207 NLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL 266
Query: 629 ESFPEILEKMGCLEDIDLEGTA-ITELPSSI 658
+ P + ++ LE +DL G ++ LPS I
Sbjct: 267 LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 9/112 (8%)
Query: 731 LSYLTELDLSCCNLIEIPQDIGCLSLLRSLDLRKNNFEYLPAXXXXXXXXXXXXXXCCNM 790
++ +EL L+ NL +P ++ + L++ +N LP C N
Sbjct: 58 INQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP----ELPASLEYLDACDNR 111
Query: 791 LQSLPELPLQLKFLQAKDCKQLQSLPEIPSCLEMV--DVCKLETLYELPQSF 840
L +LPELP LK L D QL LPE+P+ LE + D +L L ELP S
Sbjct: 112 LSTLPELPASLKHLDV-DNNQLTXLPELPALLEYINADNNQLTXLPELPTSL 162
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 57/139 (41%), Gaps = 19/139 (13%)
Query: 701 LPSSITNLNELQVVWCSGCRGLILPPSFSGLSYLTELDLSCCNLIEIPQDIGCLSLLRSL 760
LP IT L Q S LP + L YL D L E+P + L+ L
Sbjct: 78 LPPQITVLEITQNALIS------LPELPASLEYLDACDNRLSTLPELP------ASLKHL 125
Query: 761 DLRKNNFEYLPAXXXXXXXXXXXXXXCCNMLQSLPELPLQLKFLQAKDCKQLQSLPEIPS 820
D+ N LP N L LPELP L+ L ++ QL LPE+P
Sbjct: 126 DVDNNQLTXLPELPALLEYINADN----NQLTXLPELPTSLEVLSVRN-NQLTFLPELPE 180
Query: 821 CLEMVDVCK--LETLYELP 837
LE +DV LE+L +P
Sbjct: 181 SLEALDVSTNLLESLPAVP 199
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 38/57 (66%), Gaps = 4/57 (7%)
Query: 789 NMLQSLPELPLQLKFLQAKDCKQLQSLPEIPSCLEMVDV--CKLETLYELPQSFLEF 843
N L SLPELP L++L A D + L +LPE+P+ L+ +DV +L L ELP + LE+
Sbjct: 90 NALISLPELPASLEYLDACDNR-LSTLPELPASLKHLDVDNNQLTXLPELP-ALLEY 144
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 37.4 bits (85), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 67/183 (36%), Gaps = 47/183 (25%)
Query: 570 VRELYLRGTPIEYVPS-SIDCLAKLEYLDLGHCTILESIXXXXXXXXXXXXXXXXXXXXX 628
+REL+LR PIE +PS + + + L LDLG LE I
Sbjct: 149 LRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI 208
Query: 629 ESFPEILEKMGCLEDIDLEGTAITELPSSIEYXXXXXXXXXXXCSKLDNLPENLGNLKSL 688
+ P + +G LE++++ G E+ P + L SL
Sbjct: 209 KDMPNLTPLVG-LEELEMSGNHFPEI-----------------------RPGSFHGLSSL 244
Query: 689 KMLCANESAISQLPSSITNLNELQVVWCSGCRGLILPPSFSGLSYLTELDLSCCNLIEIP 748
K L S +S LI +F GL+ L EL+L+ NL +P
Sbjct: 245 KKLWVMNSQVS----------------------LIERNAFDGLASLVELNLAHNNLSSLP 282
Query: 749 QDI 751
D+
Sbjct: 283 HDL 285
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 76/182 (41%), Gaps = 19/182 (10%)
Query: 688 LKMLCANESAISQLPSSITNLNELQVVWCSGCRGLILPPSFSGLSYLTELDLSCCNLIEI 747
L+ L +++ ++ LP+ + L +L W + LP SGL L+ D +L +
Sbjct: 143 LQELSVSDNQLASLPALPSELCKL---WAYNNQLTSLPMLPSGLQELSVSDNQLASLPTL 199
Query: 748 PQDIGCLSLLRSLDLRKNNFEYLPAXXXXXXXXXXXXXXCCNMLQSLPELPLQLKFLQAK 807
P + L L N LPA N L SLP LP +LK L
Sbjct: 200 PSE------LYKLWAYNNRLTSLPALPSGLKELIV----SGNRLTSLPVLPSELKELMVS 249
Query: 808 DCKQLQSLPEIPSCLEMVDVCKLETLYELPQSFLEFGTEFMFTNCLNLNKSACNKLTDSQ 867
+L SLP +PS L + V + L LP+S + +E +NL + ++ T
Sbjct: 250 G-NRLTSLPMLPSGLLSLSVYR-NQLTRLPESLIHLSSE----TTVNLEGNPLSERTLQA 303
Query: 868 LR 869
LR
Sbjct: 304 LR 305
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 34.3 bits (77), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 24/40 (60%)
Query: 733 YLTELDLSCCNLIEIPQDIGCLSLLRSLDLRKNNFEYLPA 772
+LT L L+ +L E+P +I LS LR LDL N LPA
Sbjct: 248 FLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPA 287
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 54/134 (40%), Gaps = 2/134 (1%)
Query: 635 LEKMGCLEDIDLEGTAITELPSSIEYXXXXXXXXXXXCSKLDNLPENLGNLKSLKMLCAN 694
L + ED D+E + +P +Y ++ N+ N+ L L N
Sbjct: 198 LSQYSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLN 255
Query: 695 ESAISQLPSSITNLNELQVVWCSGCRGLILPPSFSGLSYLTELDLSCCNLIEIPQDIGCL 754
+++++LP+ I NL+ L+V+ S R LP L + +P + G L
Sbjct: 256 GNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNL 315
Query: 755 SLLRSLDLRKNNFE 768
L+ L + N E
Sbjct: 316 CNLQFLGVEGNPLE 329
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 33.1 bits (74), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 84/215 (39%), Gaps = 42/215 (19%)
Query: 649 TAITELPSSIEYXXXXXXXXXXXCSKLDNLPENLGNLKSLKMLCANESAISQLPSSITNL 708
+++ ELP +E C+ L LPE +LKSL + N A+S LP + L
Sbjct: 84 SSLPELPPHLE-------SLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYL 136
Query: 709 NELQVVWCSGCRGLILPPSFSGLSYLTELDLSCCNLIEIPQDIGCLSLLRSLDLRKNNFE 768
V + L P S+L +D+ +L ++P L + + N E
Sbjct: 137 G----VSNNQLEKL---PELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAA---GNNQLE 186
Query: 769 YLPAXXXXXXXXXXXXXXCCNMLQSLPELPLQLKFLQA---------------------K 807
LP N L+ LP+LPL L+ + A
Sbjct: 187 ELPELQNLPFLTAIYADN--NSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYA 244
Query: 808 DCKQLQSLPEIPSCLEMVDVCK--LETLYELPQSF 840
D L++LP++P LE ++V L L ELPQS
Sbjct: 245 DNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSL 279
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 38/96 (39%), Gaps = 3/96 (3%)
Query: 725 PPSFSGLSYLTELDLSCCNLIEIPQDI-GCLSLLRSLDLRKNNFEYLPAXXXXXXXXXXX 783
P F L L EL L L +P + L+ L LDL N LP+
Sbjct: 57 PGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKE 116
Query: 784 XXXCCNMLQSLPELPLQLKFLQ--AKDCKQLQSLPE 817
CCN L LP +L L A D QL+S+P
Sbjct: 117 LFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPH 152
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 570 VRELYLRGTPIEYVPS-SIDCLAKLEYLDLGHCTILESI 607
+REL+LR PIE +PS + + + L LDLG LE I
Sbjct: 109 LRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYI 147
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 570 VRELYLRGTPIEYVPS-SIDCLAKLEYLDLGHCTILESI 607
+REL+LR PIE +PS + + + L LDLG LE I
Sbjct: 109 LRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYI 147
>pdb|2ODV|A Chain A, Crystal Structure Of A Fragment Of The Plakin Domain Of
Plectin, Cys To Ala Mutant
Length = 235
Score = 32.3 bits (72), Expect = 1.7, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 3 GQKVLPVFYHVDPSDVRKQTGRVGDAFVVHEKQFREMPEKVQKWRAVLTEASNLSGWDSK 62
GQ +P YH P DV K+ G++ A + EKQ R E+++ + ++T+ +G +
Sbjct: 85 GQLKVPPGYH--PLDVEKEWGKLHVAILEREKQLRSEFERLEALQRIVTKLQMEAGLAEE 142
Query: 63 KIRPEAKLVDEIVK 76
++ L+ V+
Sbjct: 143 QLNQADALLQSDVR 156
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 25/44 (56%)
Query: 727 SFSGLSYLTELDLSCCNLIEIPQDIGCLSLLRSLDLRKNNFEYL 770
+F S L ELDL+ +L E+P + LS L+ L L N FE L
Sbjct: 273 TFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENL 316
>pdb|1WCZ|A Chain A, Crystal Structure Of An Alkaline Form Of V8 Protease From
Staphylococcus Aureus
Length = 268
Score = 31.6 bits (70), Expect = 2.8, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 33/63 (52%)
Query: 272 QDLMVISGRVVDYARGNPLAIKVLASFFHRKSKLDWEIALQNLKQISGPEILAVLKISYD 331
+D ++ + VVD G+P A+K S ++ + + + + + SG LA++K S +
Sbjct: 43 KDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEGDLAIVKFSPN 102
Query: 332 ELN 334
E N
Sbjct: 103 EQN 105
>pdb|1QY6|A Chain A, Structue Of V8 Protease From Staphylococcus Aureus
pdb|2O8L|A Chain A, Structure Of V8 Protease From Staphylococcus Aureus
Length = 274
Score = 31.6 bits (70), Expect = 2.8, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 33/63 (52%)
Query: 272 QDLMVISGRVVDYARGNPLAIKVLASFFHRKSKLDWEIALQNLKQISGPEILAVLKISYD 331
+D ++ + VVD G+P A+K S ++ + + + + + SG LA++K S +
Sbjct: 43 KDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEGDLAIVKFSPN 102
Query: 332 ELN 334
E N
Sbjct: 103 EQN 105
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 723 ILPPSFSGLSYLTELDLSCCNLIEI-PQDIGCLSLLRSLDLRKNNF 767
LP F+ L LT LDLS C L ++ P LS L+ L++ NNF
Sbjct: 485 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 723 ILPPSFSGLSYLTELDLSCCNLIEI-PQDIGCLSLLRSLDLRKNNF 767
LP F+ L LT LDLS C L ++ P LS L+ L++ NNF
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 31.2 bits (69), Expect = 3.6, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 725 PPSFSGLSYLTELDLSCCNLIEI-PQDIGCLSLLRSLDLRKNNFEYLP 771
P +F GL +L L L C L E+ P L+ L+ L L+ NN + LP
Sbjct: 97 PTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALP 144
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 723 ILPPSFSGLSYLTELDLSCCNLIEI-PQDIGCLSLLRSLDLRKNNF 767
LP F+ L LT LDLS C L ++ P LS L+ L++ NNF
Sbjct: 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
>pdb|2ODU|A Chain A, Crystal Structure Of A Fragment Of The Plakin Domain Of
Plectin
Length = 235
Score = 30.4 bits (67), Expect = 5.8, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 3 GQKVLPVFYHVDPSDVRKQTGRVGDAFVVHEKQFREMPEKVQKWRAVLTEASNLSGWDSK 62
GQ +P YH P DV K+ G++ A + EKQ R E+++ + ++T+ +G +
Sbjct: 85 GQLKVPPGYH--PLDVEKEWGKLHVAILEREKQLRSEFERLECLQRIVTKLQMEAGLCEE 142
Query: 63 KIRPEAKLVDEIVK 76
++ L+ V+
Sbjct: 143 QLNQADALLQSDVR 156
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 11/92 (11%)
Query: 727 SFSGLSYLTELDLSCCNLIEIPQDIGCLSLLRSLDLRKNNFEYLPAXXXXXXXXXXXXXX 786
+F GLS L L+L+ CNL EIP ++ L L LDL N+ +
Sbjct: 180 AFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMH------ 232
Query: 787 CCNMLQSLPELPLQLKFLQAKDCKQLQSLPEI 818
LQ L + Q++ ++ LQSL EI
Sbjct: 233 ----LQKLWMIQSQIQVIERNAFDNLQSLVEI 260
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,071,074
Number of Sequences: 62578
Number of extensions: 1265071
Number of successful extensions: 2778
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 2713
Number of HSP's gapped (non-prelim): 80
length of query: 1094
length of database: 14,973,337
effective HSP length: 109
effective length of query: 985
effective length of database: 8,152,335
effective search space: 8030049975
effective search space used: 8030049975
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)