Query 001348
Match_columns 1094
No_of_seqs 996 out of 5937
Neff 8.9
Searched_HMMs 46136
Date Thu Mar 28 22:29:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001348.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001348hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 9E-126 2E-130 1227.6 87.3 971 1-1043 96-1099(1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 9.7E-60 2.1E-64 577.9 28.8 631 95-817 161-847 (889)
3 PF00931 NB-ARC: NB-ARC domain 100.0 2.3E-36 5E-41 337.4 15.6 261 97-362 1-278 (287)
4 PLN00113 leucine-rich repeat r 100.0 3.7E-32 7.9E-37 354.3 24.9 371 406-796 42-422 (968)
5 PLN00113 leucine-rich repeat r 100.0 2.9E-30 6.2E-35 336.5 22.6 361 449-819 180-564 (968)
6 KOG0444 Cytoskeletal regulator 100.0 2.7E-30 5.9E-35 284.7 -3.6 341 459-811 9-374 (1255)
7 KOG0444 Cytoskeletal regulator 99.9 2.7E-29 5.9E-34 276.8 -4.4 323 450-796 48-380 (1255)
8 KOG4194 Membrane glycoprotein 99.9 1.6E-27 3.5E-32 262.3 4.9 340 437-798 82-436 (873)
9 KOG4194 Membrane glycoprotein 99.9 5.5E-27 1.2E-31 258.1 4.5 360 434-816 53-430 (873)
10 KOG0472 Leucine-rich repeat pr 99.9 8E-26 1.7E-30 239.2 -5.1 328 438-791 165-541 (565)
11 KOG0472 Leucine-rich repeat pr 99.9 9.2E-26 2E-30 238.8 -5.7 242 451-720 62-308 (565)
12 PLN03210 Resistant to P. syrin 99.9 1.6E-21 3.5E-26 254.4 24.9 312 450-795 581-910 (1153)
13 KOG0618 Serine/threonine phosp 99.9 1.4E-23 3E-28 243.9 -3.5 342 435-791 47-489 (1081)
14 PRK15387 E3 ubiquitin-protein 99.8 2.7E-20 5.8E-25 225.1 17.4 220 551-798 246-465 (788)
15 PRK15387 E3 ubiquitin-protein 99.8 2.3E-19 5.1E-24 217.0 16.7 243 490-774 222-465 (788)
16 KOG0618 Serine/threonine phosp 99.8 3.9E-21 8.5E-26 223.7 -1.6 345 436-811 24-488 (1081)
17 PRK15370 E3 ubiquitin-protein 99.8 8.7E-19 1.9E-23 213.8 13.7 183 569-791 242-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.7 2.8E-18 6E-23 209.4 10.6 245 458-768 179-428 (754)
19 KOG0617 Ras suppressor protein 99.6 1.8E-17 4E-22 156.7 -3.7 171 503-708 24-195 (264)
20 KOG0617 Ras suppressor protein 99.6 1E-16 2.2E-21 151.7 -4.4 141 632-773 49-191 (264)
21 KOG4237 Extracellular matrix p 99.5 1.2E-15 2.5E-20 162.8 -0.1 126 486-623 63-196 (498)
22 KOG4237 Extracellular matrix p 99.5 1.4E-15 2.9E-20 162.3 -2.6 240 569-808 92-352 (498)
23 cd00116 LRR_RI Leucine-rich re 99.5 1.7E-14 3.7E-19 163.8 4.4 109 683-791 162-291 (319)
24 cd00116 LRR_RI Leucine-rich re 99.5 1.4E-14 3.1E-19 164.4 3.1 239 551-789 27-318 (319)
25 PLN03194 putative disease resi 99.5 9.5E-14 2.1E-18 136.3 6.9 70 2-84 108-179 (187)
26 PRK04841 transcriptional regul 99.3 1.9E-10 4.1E-15 149.8 25.1 292 88-403 10-335 (903)
27 KOG4658 Apoptotic ATPase [Sign 99.3 3.6E-12 7.8E-17 158.5 8.5 227 569-796 524-788 (889)
28 KOG0532 Leucine-rich repeat (L 99.2 2E-12 4.4E-17 144.2 -1.3 191 594-789 78-271 (722)
29 COG4886 Leucine-rich repeat (L 99.1 1E-10 2.2E-15 137.0 7.9 198 595-796 97-295 (394)
30 PRK00411 cdc6 cell division co 99.1 6E-09 1.3E-13 121.9 22.2 247 88-347 26-308 (394)
31 KOG0532 Leucine-rich repeat (L 99.1 6.6E-12 1.4E-16 140.3 -3.9 191 614-809 74-270 (722)
32 COG4886 Leucine-rich repeat (L 99.0 2.1E-10 4.6E-15 134.2 7.4 184 587-774 112-296 (394)
33 KOG1259 Nischarin, modulator o 99.0 5.7E-11 1.2E-15 122.6 1.1 129 639-793 284-414 (490)
34 PF01637 Arch_ATPase: Archaeal 99.0 5.3E-10 1.1E-14 120.6 8.2 195 94-294 1-233 (234)
35 PF05729 NACHT: NACHT domain 99.0 2.6E-09 5.7E-14 108.4 12.4 143 116-264 1-163 (166)
36 TIGR02928 orc1/cdc6 family rep 99.0 4.8E-08 1E-12 113.1 23.3 246 88-345 11-298 (365)
37 TIGR00635 ruvB Holliday juncti 99.0 4.7E-09 1E-13 118.2 14.4 267 92-382 4-289 (305)
38 KOG3207 Beta-tubulin folding c 99.0 1.1E-10 2.4E-15 127.1 1.1 158 635-792 168-340 (505)
39 KOG3207 Beta-tubulin folding c 98.9 3.4E-10 7.3E-15 123.4 3.2 200 569-768 122-339 (505)
40 PRK00080 ruvB Holliday junctio 98.9 5.1E-09 1.1E-13 118.7 11.9 272 88-382 21-310 (328)
41 KOG1259 Nischarin, modulator o 98.9 1.8E-10 3.9E-15 119.0 -0.1 221 552-791 166-387 (490)
42 TIGR03015 pepcterm_ATPase puta 98.9 7.5E-08 1.6E-12 106.4 18.4 178 115-299 43-242 (269)
43 KOG1909 Ran GTPase-activating 98.8 2.4E-10 5.2E-15 121.4 -2.4 221 569-790 31-310 (382)
44 COG3899 Predicted ATPase [Gene 98.8 2.9E-08 6.3E-13 124.6 15.1 326 93-429 1-407 (849)
45 PF14580 LRR_9: Leucine-rich r 98.8 2.4E-09 5.3E-14 107.5 3.3 105 687-793 20-128 (175)
46 PF14580 LRR_9: Leucine-rich r 98.8 5.5E-09 1.2E-13 105.0 4.8 137 647-787 5-149 (175)
47 COG2256 MGS1 ATPase related to 98.8 6.6E-08 1.4E-12 105.5 13.0 173 88-290 20-207 (436)
48 PRK06893 DNA replication initi 98.7 1.3E-07 2.7E-12 101.2 12.4 149 115-294 39-202 (229)
49 COG2909 MalT ATP-dependent tra 98.6 1E-06 2.2E-11 104.7 18.6 292 88-403 15-341 (894)
50 PTZ00202 tuzin; Provisional 98.6 3.7E-06 8E-11 93.7 21.4 208 43-263 193-433 (550)
51 PRK13342 recombination factor 98.6 6.7E-07 1.5E-11 104.5 14.8 180 88-297 8-198 (413)
52 PLN03150 hypothetical protein; 98.5 1.4E-07 3E-12 115.8 8.2 105 593-697 420-526 (623)
53 KOG0531 Protein phosphatase 1, 98.5 1.9E-08 4.1E-13 118.0 0.6 192 569-789 96-288 (414)
54 PTZ00112 origin recognition co 98.5 2E-06 4.4E-11 102.8 17.0 242 88-342 751-1027(1164)
55 KOG1909 Ran GTPase-activating 98.5 1.6E-08 3.4E-13 107.9 -0.4 205 586-791 25-283 (382)
56 PLN03150 hypothetical protein; 98.5 2E-07 4.4E-12 114.3 7.9 105 616-720 419-526 (623)
57 COG3903 Predicted ATPase [Gene 98.5 1.4E-07 3E-12 103.9 5.0 260 113-382 12-292 (414)
58 KOG0531 Protein phosphatase 1, 98.5 2.1E-08 4.5E-13 117.6 -1.6 194 569-792 73-269 (414)
59 TIGR03420 DnaA_homol_Hda DnaA 98.4 2.3E-06 5.1E-11 91.7 14.2 174 90-296 13-202 (226)
60 PF13173 AAA_14: AAA domain 98.4 1.6E-06 3.4E-11 83.8 10.5 120 115-256 2-127 (128)
61 PRK15386 type III secretion pr 98.4 6.8E-07 1.5E-11 100.5 8.9 134 658-808 48-186 (426)
62 TIGR01242 26Sp45 26S proteasom 98.4 1.2E-06 2.6E-11 100.8 10.4 173 90-289 120-328 (364)
63 PRK07003 DNA polymerase III su 98.3 1.1E-05 2.5E-10 96.4 17.6 183 88-294 12-220 (830)
64 PRK04195 replication factor C 98.3 1.6E-05 3.4E-10 95.0 19.0 215 88-331 10-239 (482)
65 PF05496 RuvB_N: Holliday junc 98.3 7.6E-06 1.6E-10 84.1 13.0 179 88-298 20-224 (233)
66 PF13191 AAA_16: AAA ATPase do 98.3 1.1E-06 2.3E-11 91.1 6.6 50 93-142 1-51 (185)
67 PRK12402 replication factor C 98.3 9.4E-06 2E-10 92.9 14.7 198 88-293 11-224 (337)
68 PRK14963 DNA polymerase III su 98.3 2E-05 4.4E-10 93.3 17.6 192 88-292 10-214 (504)
69 PRK14961 DNA polymerase III su 98.3 1.6E-05 3.6E-10 91.2 16.1 193 88-292 12-217 (363)
70 PLN03025 replication factor C 98.3 8.1E-06 1.7E-10 92.2 13.2 183 88-291 9-196 (319)
71 PRK00440 rfc replication facto 98.3 2.5E-05 5.5E-10 88.6 17.4 184 88-292 13-200 (319)
72 PRK14960 DNA polymerase III su 98.2 1.7E-05 3.6E-10 94.1 15.4 181 88-292 11-216 (702)
73 cd00009 AAA The AAA+ (ATPases 98.2 7E-06 1.5E-10 81.0 10.8 123 95-235 1-131 (151)
74 PRK14949 DNA polymerase III su 98.2 1.8E-05 3.9E-10 96.6 16.1 187 88-294 12-219 (944)
75 PRK15386 type III secretion pr 98.2 4.3E-06 9.2E-11 94.2 9.8 53 755-810 156-211 (426)
76 PRK12323 DNA polymerase III su 98.2 1.2E-05 2.7E-10 94.9 13.8 198 88-294 12-224 (700)
77 KOG2028 ATPase related to the 98.2 4.6E-06 9.9E-11 89.3 8.2 150 88-263 134-293 (554)
78 PF13401 AAA_22: AAA domain; P 98.2 6.3E-06 1.4E-10 80.0 8.6 113 114-233 3-125 (131)
79 PRK08727 hypothetical protein; 98.2 2.7E-05 5.8E-10 83.5 14.2 169 90-291 17-200 (233)
80 PRK07471 DNA polymerase III su 98.1 0.0002 4.3E-09 81.6 21.3 200 88-296 15-239 (365)
81 TIGR02397 dnaX_nterm DNA polym 98.1 0.00011 2.5E-09 84.6 19.8 185 88-296 10-219 (355)
82 KOG2120 SCF ubiquitin ligase, 98.1 1.1E-07 2.4E-12 99.0 -4.7 152 569-720 186-349 (419)
83 PF14516 AAA_35: AAA-like doma 98.1 0.0003 6.5E-09 79.6 22.5 205 88-302 7-246 (331)
84 PRK14957 DNA polymerase III su 98.1 5.6E-05 1.2E-09 89.7 17.1 184 88-295 12-221 (546)
85 COG1474 CDC6 Cdc6-related prot 98.1 6.7E-05 1.4E-09 85.3 17.0 199 88-294 13-237 (366)
86 PRK14956 DNA polymerase III su 98.1 3.8E-05 8.2E-10 88.7 15.1 192 88-291 14-218 (484)
87 PRK08691 DNA polymerase III su 98.1 2E-05 4.3E-10 94.4 13.2 182 88-293 12-218 (709)
88 PRK06645 DNA polymerase III su 98.1 5.2E-05 1.1E-09 89.4 16.5 186 88-292 17-226 (507)
89 PRK03992 proteasome-activating 98.1 3.6E-05 7.8E-10 89.0 14.9 171 91-288 130-336 (389)
90 PRK13341 recombination factor 98.1 2.1E-05 4.6E-10 96.7 13.6 172 88-290 24-212 (725)
91 PRK05564 DNA polymerase III su 98.1 8E-05 1.7E-09 83.9 17.3 177 92-295 4-190 (313)
92 KOG2982 Uncharacterized conser 98.1 1.8E-06 3.9E-11 90.1 3.5 207 590-796 44-267 (418)
93 PRK08903 DnaA regulatory inact 98.1 2.1E-05 4.6E-10 84.3 12.0 176 88-299 14-203 (227)
94 PF13855 LRR_8: Leucine rich r 98.1 2.5E-06 5.5E-11 70.3 3.7 58 569-626 2-60 (61)
95 PRK09087 hypothetical protein; 98.1 3.8E-05 8.2E-10 81.7 13.4 140 115-294 44-194 (226)
96 TIGR02903 spore_lon_C ATP-depe 98.1 5.6E-05 1.2E-09 92.2 16.7 204 88-297 150-397 (615)
97 PF13855 LRR_8: Leucine rich r 98.1 3.4E-06 7.4E-11 69.5 4.3 61 591-651 1-61 (61)
98 PF00308 Bac_DnaA: Bacterial d 98.1 3.1E-05 6.7E-10 82.0 12.7 154 114-289 33-202 (219)
99 KOG1859 Leucine-rich repeat pr 98.1 1.2E-07 2.5E-12 109.4 -6.0 199 565-771 81-295 (1096)
100 PRK14962 DNA polymerase III su 98.1 5.5E-05 1.2E-09 88.9 15.4 186 88-297 10-221 (472)
101 PRK07994 DNA polymerase III su 98.0 5.7E-05 1.2E-09 91.1 14.9 183 88-294 12-219 (647)
102 PRK08084 DNA replication initi 98.0 8E-05 1.7E-09 80.0 14.7 169 91-292 21-206 (235)
103 PRK05642 DNA replication initi 98.0 7.5E-05 1.6E-09 80.1 14.2 147 115-292 45-205 (234)
104 KOG2120 SCF ubiquitin ligase, 98.0 1.5E-07 3.2E-12 98.0 -6.6 82 592-673 186-271 (419)
105 PRK14951 DNA polymerase III su 98.0 0.00011 2.4E-09 88.5 16.4 192 88-293 12-223 (618)
106 PRK09112 DNA polymerase III su 98.0 0.00011 2.5E-09 83.1 15.5 196 88-296 19-241 (351)
107 PRK14964 DNA polymerase III su 98.0 0.00012 2.7E-09 85.6 16.1 180 88-291 9-213 (491)
108 PRK14955 DNA polymerase III su 98.0 0.00013 2.9E-09 84.7 16.5 198 88-292 12-225 (397)
109 PRK07940 DNA polymerase III su 98.0 0.00015 3.3E-09 83.2 16.4 178 91-295 4-213 (394)
110 PRK09376 rho transcription ter 98.0 1.1E-05 2.3E-10 90.0 6.7 92 115-209 169-269 (416)
111 PRK14087 dnaA chromosomal repl 98.0 8.5E-05 1.8E-09 87.2 14.7 165 115-297 141-321 (450)
112 PRK05896 DNA polymerase III su 98.0 9.6E-05 2.1E-09 87.8 14.7 190 88-290 12-215 (605)
113 PRK14958 DNA polymerase III su 97.9 9E-05 1.9E-09 88.1 13.8 181 88-292 12-217 (509)
114 PTZ00361 26 proteosome regulat 97.9 5.5E-05 1.2E-09 87.6 11.4 155 89-266 180-369 (438)
115 PRK14969 DNA polymerase III su 97.9 0.00012 2.7E-09 87.6 14.3 180 88-291 12-216 (527)
116 PRK14088 dnaA chromosomal repl 97.9 0.0002 4.4E-09 84.0 15.3 156 115-291 130-301 (440)
117 PRK14970 DNA polymerase III su 97.9 0.00026 5.7E-09 81.8 16.1 181 88-291 13-205 (367)
118 TIGR03689 pup_AAA proteasome A 97.9 0.00012 2.6E-09 86.1 12.9 159 89-264 179-378 (512)
119 PRK14954 DNA polymerase III su 97.9 0.00046 9.9E-09 83.5 18.2 196 88-290 12-223 (620)
120 TIGR02881 spore_V_K stage V sp 97.8 0.00011 2.4E-09 80.5 11.9 131 114-265 41-192 (261)
121 PRK14952 DNA polymerase III su 97.8 0.00053 1.1E-08 82.4 18.3 187 88-295 9-220 (584)
122 TIGR00362 DnaA chromosomal rep 97.8 0.00032 6.9E-09 82.2 16.4 156 115-292 136-307 (405)
123 PRK14959 DNA polymerase III su 97.8 0.0006 1.3E-08 81.6 18.6 188 88-299 12-225 (624)
124 PRK00149 dnaA chromosomal repl 97.8 0.00021 4.5E-09 84.8 14.8 180 90-291 120-318 (450)
125 cd01128 rho_factor Transcripti 97.8 2.5E-05 5.4E-10 83.8 6.4 91 115-208 16-115 (249)
126 KOG1859 Leucine-rich repeat pr 97.8 4.6E-07 1E-11 104.6 -7.3 178 608-791 102-292 (1096)
127 PTZ00454 26S protease regulato 97.8 0.00023 5E-09 82.0 14.3 174 89-289 142-351 (398)
128 PHA02544 44 clamp loader, smal 97.8 0.00016 3.5E-09 81.9 12.8 150 88-262 17-171 (316)
129 PRK09111 DNA polymerase III su 97.8 0.00074 1.6E-08 81.7 18.9 195 88-294 20-232 (598)
130 TIGR00678 holB DNA polymerase 97.8 0.00075 1.6E-08 70.0 15.7 89 195-291 95-187 (188)
131 PRK07764 DNA polymerase III su 97.7 0.0004 8.7E-09 86.7 15.8 185 88-291 11-217 (824)
132 TIGR00767 rho transcription te 97.7 5.4E-05 1.2E-09 85.0 7.4 92 115-209 168-268 (415)
133 TIGR02639 ClpA ATP-dependent C 97.7 0.00017 3.8E-09 90.5 12.8 152 88-264 178-358 (731)
134 PRK06305 DNA polymerase III su 97.7 0.00093 2E-08 78.6 17.7 184 88-290 13-217 (451)
135 PRK14950 DNA polymerase III su 97.7 0.00034 7.5E-09 85.3 14.4 195 88-294 12-220 (585)
136 PRK07133 DNA polymerase III su 97.7 0.00063 1.4E-08 82.7 16.1 183 88-290 14-214 (725)
137 PRK06620 hypothetical protein; 97.7 0.00021 4.4E-09 75.4 10.3 130 116-288 45-182 (214)
138 PRK08451 DNA polymerase III su 97.7 0.00069 1.5E-08 80.2 15.6 187 88-295 10-218 (535)
139 PRK14953 DNA polymerase III su 97.7 0.00099 2.1E-08 78.9 16.9 193 88-294 12-219 (486)
140 PRK12422 chromosomal replicati 97.7 0.00065 1.4E-08 79.6 15.1 131 115-265 141-285 (445)
141 PF12799 LRR_4: Leucine Rich r 97.7 3.8E-05 8.2E-10 58.1 3.2 39 733-771 2-40 (44)
142 KOG2982 Uncharacterized conser 97.7 2.2E-05 4.8E-10 82.1 2.6 173 590-768 70-262 (418)
143 PRK14948 DNA polymerase III su 97.6 0.0011 2.3E-08 80.9 16.7 196 88-295 12-222 (620)
144 TIGR03345 VI_ClpV1 type VI sec 97.6 0.00098 2.1E-08 84.4 16.7 154 88-264 183-363 (852)
145 PRK14086 dnaA chromosomal repl 97.6 0.00094 2E-08 79.6 15.0 151 116-288 315-481 (617)
146 KOG2543 Origin recognition com 97.6 0.002 4.3E-08 70.6 16.0 167 90-264 4-193 (438)
147 KOG4579 Leucine-rich repeat (L 97.6 3.1E-06 6.7E-11 78.6 -4.5 60 731-790 76-135 (177)
148 KOG3665 ZYG-1-like serine/thre 97.6 2.4E-05 5.2E-10 95.8 1.5 148 639-787 122-284 (699)
149 PF00004 AAA: ATPase family as 97.6 0.00047 1E-08 66.7 10.3 23 118-140 1-23 (132)
150 COG1222 RPT1 ATP-dependent 26S 97.6 0.0015 3.3E-08 71.0 14.8 195 91-315 150-393 (406)
151 TIGR02880 cbbX_cfxQ probable R 97.5 0.00072 1.6E-08 74.7 12.6 128 117-264 60-208 (284)
152 KOG4579 Leucine-rich repeat (L 97.5 5.8E-06 1.2E-10 76.9 -3.3 87 729-816 50-137 (177)
153 PRK06647 DNA polymerase III su 97.5 0.0024 5.1E-08 77.0 17.7 191 88-292 12-217 (563)
154 KOG2227 Pre-initiation complex 97.5 0.0054 1.2E-07 69.0 18.6 171 89-264 147-338 (529)
155 PRK10865 protein disaggregatio 97.5 0.0017 3.8E-08 82.5 16.9 155 88-264 174-354 (857)
156 PRK12377 putative replication 97.5 0.0018 3.8E-08 69.6 14.3 36 115-150 101-136 (248)
157 PRK08116 hypothetical protein; 97.5 0.00035 7.6E-09 76.4 9.1 102 116-234 115-221 (268)
158 PRK07952 DNA replication prote 97.5 0.0028 6E-08 67.9 15.6 49 101-149 85-133 (244)
159 COG5238 RNA1 Ran GTPase-activa 97.5 5.9E-05 1.3E-09 78.1 2.6 38 587-624 26-67 (388)
160 PRK14971 DNA polymerase III su 97.5 0.003 6.5E-08 77.0 17.7 179 88-291 13-218 (614)
161 PRK05563 DNA polymerase III su 97.5 0.0023 4.9E-08 77.4 16.5 191 88-291 12-216 (559)
162 KOG4341 F-box protein containi 97.5 8.2E-06 1.8E-10 89.4 -4.0 86 707-792 318-415 (483)
163 CHL00181 cbbX CbbX; Provisiona 97.5 0.0024 5.3E-08 70.5 15.2 131 116-266 60-211 (287)
164 CHL00095 clpC Clp protease ATP 97.4 0.00089 1.9E-08 85.2 13.3 150 91-263 178-353 (821)
165 COG0593 DnaA ATPase involved i 97.4 0.0022 4.8E-08 72.8 14.9 160 114-292 112-287 (408)
166 CHL00176 ftsH cell division pr 97.4 0.0013 2.9E-08 80.0 13.9 173 90-287 181-386 (638)
167 KOG3665 ZYG-1-like serine/thre 97.4 0.00011 2.3E-09 90.3 4.2 129 591-720 122-261 (699)
168 TIGR03346 chaperone_ClpB ATP-d 97.4 0.0011 2.4E-08 84.6 13.3 156 88-264 169-349 (852)
169 TIGR01241 FtsH_fam ATP-depende 97.4 0.0015 3.3E-08 78.5 13.8 174 89-288 52-259 (495)
170 KOG0989 Replication factor C, 97.4 0.0011 2.3E-08 70.6 10.6 190 88-295 32-231 (346)
171 COG5238 RNA1 Ran GTPase-activa 97.4 0.00013 2.7E-09 75.7 3.5 82 569-651 31-132 (388)
172 PF12799 LRR_4: Leucine Rich r 97.3 0.00024 5.3E-09 53.8 3.8 37 755-791 1-37 (44)
173 PRK05707 DNA polymerase III su 97.3 0.0042 9.1E-08 69.8 15.1 93 196-295 107-203 (328)
174 COG1373 Predicted ATPase (AAA+ 97.3 0.0023 4.9E-08 74.2 13.2 134 99-260 24-163 (398)
175 PRK07399 DNA polymerase III su 97.3 0.0084 1.8E-07 67.1 17.2 192 92-295 4-221 (314)
176 PRK11034 clpA ATP-dependent Cl 97.3 0.0014 3.1E-08 81.2 11.8 48 91-140 185-232 (758)
177 PRK14965 DNA polymerase III su 97.2 0.0029 6.3E-08 76.9 13.9 189 88-295 12-221 (576)
178 PRK09183 transposase/IS protei 97.2 0.0039 8.5E-08 67.9 13.4 28 115-142 102-129 (259)
179 TIGR00602 rad24 checkpoint pro 97.2 0.001 2.3E-08 80.4 9.6 53 88-140 80-135 (637)
180 PRK08181 transposase; Validate 97.2 0.0011 2.3E-08 72.2 8.8 35 116-150 107-141 (269)
181 TIGR01243 CDC48 AAA family ATP 97.2 0.0033 7.1E-08 79.4 14.1 174 90-289 176-381 (733)
182 KOG4341 F-box protein containi 97.2 2.5E-05 5.5E-10 85.7 -4.3 105 708-812 293-414 (483)
183 CHL00195 ycf46 Ycf46; Provisio 97.1 0.012 2.5E-07 69.6 17.2 154 90-266 226-407 (489)
184 PF10443 RNA12: RNA12 protein; 97.1 0.044 9.6E-07 62.2 20.6 195 196-401 148-394 (431)
185 PF05673 DUF815: Protein of un 97.1 0.002 4.4E-08 67.5 9.4 55 88-142 23-79 (249)
186 PRK11889 flhF flagellar biosyn 97.1 0.019 4.1E-07 64.6 16.6 29 114-142 240-268 (436)
187 smart00382 AAA ATPases associa 97.1 0.0012 2.6E-08 64.3 6.7 34 116-149 3-36 (148)
188 TIGR01243 CDC48 AAA family ATP 97.0 0.0091 2E-07 75.4 15.9 172 91-289 452-657 (733)
189 PRK10536 hypothetical protein; 97.0 0.0023 5E-08 68.0 8.6 53 90-146 53-107 (262)
190 KOG1644 U2-associated snRNP A' 97.0 0.00086 1.9E-08 67.1 5.0 99 688-787 44-149 (233)
191 PLN00020 ribulose bisphosphate 97.0 0.0096 2.1E-07 66.1 13.5 154 113-290 146-333 (413)
192 PRK00771 signal recognition pa 96.9 0.0071 1.5E-07 70.3 12.7 106 23-142 3-122 (437)
193 COG2255 RuvB Holliday junction 96.9 0.0022 4.8E-08 67.6 7.1 261 88-385 22-315 (332)
194 PRK06526 transposase; Provisio 96.9 0.0022 4.8E-08 69.4 7.3 28 115-142 98-125 (254)
195 cd01133 F1-ATPase_beta F1 ATP 96.9 0.0021 4.5E-08 69.3 7.0 91 115-208 69-175 (274)
196 KOG0730 AAA+-type ATPase [Post 96.9 0.025 5.3E-07 66.6 15.9 164 92-279 434-631 (693)
197 KOG1644 U2-associated snRNP A' 96.8 0.0018 3.8E-08 64.9 5.4 83 709-792 42-127 (233)
198 PRK11331 5-methylcytosine-spec 96.8 0.0023 5.1E-08 73.4 7.2 55 92-150 175-231 (459)
199 PF05621 TniB: Bacterial TniB 96.8 0.017 3.6E-07 62.8 13.0 193 92-292 34-258 (302)
200 PRK06921 hypothetical protein; 96.7 0.0023 5E-08 69.9 6.1 36 115-150 117-153 (266)
201 TIGR00763 lon ATP-dependent pr 96.7 0.04 8.6E-07 69.9 18.0 51 93-143 321-375 (775)
202 TIGR02639 ClpA ATP-dependent C 96.7 0.018 3.9E-07 72.6 14.8 48 92-139 454-508 (731)
203 KOG0735 AAA+-type ATPase [Post 96.7 0.022 4.8E-07 67.1 13.9 132 115-264 431-586 (952)
204 PRK08118 topology modulation p 96.7 0.0038 8.3E-08 63.1 7.1 33 116-148 2-37 (167)
205 PRK10416 signal recognition pa 96.7 0.0063 1.4E-07 68.0 9.5 36 114-150 113-148 (318)
206 PF04665 Pox_A32: Poxvirus A32 96.7 0.0018 3.8E-08 68.5 4.5 35 116-150 14-48 (241)
207 COG0466 Lon ATP-dependent Lon 96.7 0.023 5E-07 67.5 14.0 157 92-265 323-509 (782)
208 PRK10865 protein disaggregatio 96.7 0.0068 1.5E-07 77.2 10.6 51 91-141 567-624 (857)
209 PRK12608 transcription termina 96.7 0.0054 1.2E-07 68.8 8.4 103 102-208 121-232 (380)
210 cd01131 PilT Pilus retraction 96.7 0.0054 1.2E-07 64.1 8.1 110 116-237 2-112 (198)
211 KOG0733 Nuclear AAA ATPase (VC 96.6 0.013 2.8E-07 67.9 11.4 52 91-142 189-250 (802)
212 PRK08769 DNA polymerase III su 96.6 0.045 9.7E-07 61.1 15.6 94 195-296 112-209 (319)
213 PF01695 IstB_IS21: IstB-like 96.6 0.0022 4.7E-08 65.5 4.9 36 115-150 47-82 (178)
214 PRK10787 DNA-binding ATP-depen 96.6 0.047 1E-06 68.7 17.5 155 93-264 323-506 (784)
215 TIGR00064 ftsY signal recognit 96.6 0.0069 1.5E-07 66.3 8.8 30 113-142 70-99 (272)
216 KOG2739 Leucine-rich acidic nu 96.6 0.0015 3.2E-08 68.3 3.3 88 728-816 61-160 (260)
217 TIGR00959 ffh signal recogniti 96.6 0.048 1E-06 63.3 15.8 108 22-140 5-124 (428)
218 KOG2228 Origin recognition com 96.6 0.024 5.2E-07 61.3 12.0 173 90-263 22-218 (408)
219 TIGR02640 gas_vesic_GvpN gas v 96.6 0.034 7.4E-07 60.8 13.8 25 117-141 23-47 (262)
220 PRK07261 topology modulation p 96.5 0.007 1.5E-07 61.5 7.8 23 117-139 2-24 (171)
221 PRK08058 DNA polymerase III su 96.5 0.043 9.4E-07 62.1 14.9 145 93-263 6-181 (329)
222 KOG0741 AAA+-type ATPase [Post 96.5 0.016 3.4E-07 66.0 10.9 130 113-263 536-685 (744)
223 TIGR03345 VI_ClpV1 type VI sec 96.5 0.011 2.4E-07 75.1 10.9 50 92-141 566-622 (852)
224 PRK14974 cell division protein 96.5 0.019 4E-07 64.5 11.5 29 114-142 139-167 (336)
225 PRK06835 DNA replication prote 96.5 0.0088 1.9E-07 67.1 8.8 35 116-150 184-218 (329)
226 PF13207 AAA_17: AAA domain; P 96.4 0.0026 5.7E-08 60.5 3.7 23 117-139 1-23 (121)
227 PRK08939 primosomal protein Dn 96.4 0.012 2.5E-07 65.7 9.2 37 114-150 155-191 (306)
228 PRK06090 DNA polymerase III su 96.4 0.2 4.2E-06 56.0 18.7 90 196-295 108-201 (319)
229 KOG2035 Replication factor C, 96.4 0.13 2.8E-06 54.4 15.7 230 88-333 9-282 (351)
230 TIGR03346 chaperone_ClpB ATP-d 96.4 0.011 2.3E-07 75.7 9.8 51 92-142 565-622 (852)
231 COG1223 Predicted ATPase (AAA+ 96.4 0.015 3.2E-07 60.5 8.7 173 90-288 119-318 (368)
232 COG3267 ExeA Type II secretory 96.3 0.1 2.2E-06 54.9 14.7 177 113-297 49-247 (269)
233 PF02562 PhoH: PhoH-like prote 96.3 0.007 1.5E-07 62.6 6.2 122 98-234 6-156 (205)
234 COG2607 Predicted ATPase (AAA+ 96.3 0.047 1E-06 56.4 11.6 56 90-145 58-115 (287)
235 CHL00095 clpC Clp protease ATP 96.3 0.02 4.3E-07 73.1 11.2 118 92-219 509-636 (821)
236 smart00763 AAA_PrkA PrkA AAA d 96.3 0.003 6.6E-08 70.5 3.4 49 93-141 52-104 (361)
237 KOG0728 26S proteasome regulat 96.2 0.14 3.1E-06 52.9 14.7 146 93-264 147-331 (404)
238 cd01120 RecA-like_NTPases RecA 96.2 0.0079 1.7E-07 60.3 6.1 34 117-150 1-34 (165)
239 TIGR01425 SRP54_euk signal rec 96.2 0.039 8.5E-07 63.7 12.1 110 22-142 6-127 (429)
240 PRK11034 clpA ATP-dependent Cl 96.2 0.017 3.6E-07 72.0 9.6 48 93-140 459-513 (758)
241 PRK06871 DNA polymerase III su 96.2 0.19 4.1E-06 56.3 17.0 176 101-292 11-200 (325)
242 PRK06696 uridine kinase; Valid 96.2 0.0073 1.6E-07 64.4 5.7 46 97-142 3-49 (223)
243 PRK05703 flhF flagellar biosyn 96.1 0.17 3.6E-06 59.2 17.2 26 115-140 221-246 (424)
244 PRK06964 DNA polymerase III su 96.1 0.36 7.8E-06 54.5 19.2 92 195-296 131-226 (342)
245 PRK10733 hflB ATP-dependent me 96.1 0.047 1E-06 67.5 13.4 153 92-266 152-337 (644)
246 PF13177 DNA_pol3_delta2: DNA 96.1 0.052 1.1E-06 54.6 11.3 137 96-251 1-161 (162)
247 KOG0991 Replication factor C, 96.1 0.0074 1.6E-07 61.5 5.1 51 88-140 23-73 (333)
248 PF07728 AAA_5: AAA domain (dy 96.1 0.0071 1.5E-07 59.2 5.0 22 118-139 2-23 (139)
249 PRK07993 DNA polymerase III su 96.1 0.15 3.3E-06 57.5 16.2 179 100-294 10-203 (334)
250 PRK10867 signal recognition pa 96.1 0.044 9.6E-07 63.7 12.1 29 114-142 99-127 (433)
251 PRK12724 flagellar biosynthesi 96.1 0.14 2.9E-06 58.8 15.6 25 115-139 223-247 (432)
252 COG1618 Predicted nucleotide k 96.1 0.006 1.3E-07 59.0 4.0 40 115-154 5-46 (179)
253 COG1484 DnaC DNA replication p 96.0 0.015 3.2E-07 63.1 7.4 28 114-141 104-131 (254)
254 PRK05541 adenylylsulfate kinas 96.0 0.024 5.2E-07 58.0 8.7 37 114-150 6-42 (176)
255 PRK04132 replication factor C 96.0 0.088 1.9E-06 65.9 14.9 153 121-293 570-729 (846)
256 COG0542 clpA ATP-binding subun 96.0 0.033 7.1E-07 68.1 10.9 119 92-220 491-619 (786)
257 KOG2004 Mitochondrial ATP-depe 96.0 0.0058 1.2E-07 72.0 4.1 53 92-144 411-467 (906)
258 PRK07667 uridine kinase; Provi 96.0 0.01 2.2E-07 61.7 5.7 42 101-142 3-44 (193)
259 KOG0731 AAA+-type ATPase conta 96.0 0.095 2.1E-06 63.8 14.2 177 89-291 308-520 (774)
260 COG2812 DnaX DNA polymerase II 95.9 0.03 6.6E-07 65.7 9.8 187 88-289 12-214 (515)
261 KOG0729 26S proteasome regulat 95.9 0.059 1.3E-06 56.0 10.5 56 93-153 178-244 (435)
262 PRK11608 pspF phage shock prot 95.9 0.1 2.2E-06 59.0 13.6 47 92-138 6-52 (326)
263 PF07693 KAP_NTPase: KAP famil 95.9 0.17 3.7E-06 57.4 15.6 44 99-142 3-47 (325)
264 COG0470 HolB ATPase involved i 95.9 0.047 1E-06 61.9 11.1 138 93-250 2-167 (325)
265 KOG0744 AAA+-type ATPase [Post 95.9 0.034 7.3E-07 59.8 8.7 35 115-149 177-215 (423)
266 TIGR01817 nifA Nif-specific re 95.9 0.093 2E-06 63.9 14.0 51 89-139 193-243 (534)
267 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.9 0.019 4.2E-07 56.5 6.7 112 114-248 25-140 (144)
268 cd03214 ABC_Iron-Siderophores_ 95.8 0.028 6E-07 57.8 8.1 130 115-249 25-172 (180)
269 PF00448 SRP54: SRP54-type pro 95.8 0.017 3.7E-07 60.0 6.3 35 115-149 1-35 (196)
270 PRK12727 flagellar biosynthesi 95.8 0.063 1.4E-06 63.0 11.5 47 96-142 327-377 (559)
271 PHA00729 NTP-binding motif con 95.8 0.033 7.2E-07 58.4 8.4 27 114-140 16-42 (226)
272 COG1120 FepC ABC-type cobalami 95.8 0.013 2.8E-07 62.6 5.4 62 186-249 146-213 (258)
273 KOG2739 Leucine-rich acidic nu 95.7 0.0073 1.6E-07 63.3 3.2 41 660-700 63-105 (260)
274 PRK09361 radB DNA repair and r 95.7 0.02 4.4E-07 61.2 6.5 49 103-151 11-59 (225)
275 TIGR01359 UMP_CMP_kin_fam UMP- 95.7 0.046 9.9E-07 56.3 8.9 23 117-139 1-23 (183)
276 PF00406 ADK: Adenylate kinase 95.6 0.016 3.5E-07 57.5 5.3 91 120-216 1-94 (151)
277 PRK04296 thymidine kinase; Pro 95.6 0.018 3.9E-07 59.7 5.7 109 116-234 3-116 (190)
278 COG0488 Uup ATPase components 95.6 0.079 1.7E-06 63.3 11.5 130 115-250 348-511 (530)
279 COG0464 SpoVK ATPases of the A 95.5 0.31 6.6E-06 58.9 16.8 152 92-266 242-425 (494)
280 KOG2123 Uncharacterized conser 95.5 0.0011 2.3E-08 69.3 -3.7 67 728-795 37-105 (388)
281 cd03223 ABCD_peroxisomal_ALDP 95.5 0.033 7.2E-07 56.3 7.0 124 115-249 27-161 (166)
282 cd03216 ABC_Carb_Monos_I This 95.5 0.03 6.5E-07 56.5 6.6 125 115-248 26-155 (163)
283 KOG2123 Uncharacterized conser 95.5 0.00086 1.9E-08 70.0 -4.6 96 687-784 20-123 (388)
284 cd00561 CobA_CobO_BtuR ATP:cor 95.5 0.09 1.9E-06 52.2 9.6 117 116-235 3-139 (159)
285 cd01394 radB RadB. The archaea 95.4 0.056 1.2E-06 57.4 8.9 49 102-150 6-54 (218)
286 KOG1947 Leucine rich repeat pr 95.4 0.0023 5E-08 77.0 -2.1 16 659-674 292-307 (482)
287 KOG0734 AAA+-type ATPase conta 95.4 0.11 2.3E-06 59.6 11.1 148 91-264 303-484 (752)
288 PF00485 PRK: Phosphoribulokin 95.4 0.014 3E-07 60.8 3.9 26 117-142 1-26 (194)
289 COG2884 FtsE Predicted ATPase 95.4 0.089 1.9E-06 52.6 8.9 53 186-240 145-203 (223)
290 PRK14722 flhF flagellar biosyn 95.3 0.13 2.8E-06 58.5 11.7 30 114-143 136-165 (374)
291 TIGR02974 phageshock_pspF psp 95.3 0.15 3.2E-06 57.7 12.2 45 94-138 1-45 (329)
292 PRK15455 PrkA family serine pr 95.3 0.016 3.5E-07 68.0 4.4 51 91-141 75-129 (644)
293 PF13671 AAA_33: AAA domain; P 95.3 0.057 1.2E-06 52.9 7.8 24 117-140 1-24 (143)
294 PF13238 AAA_18: AAA domain; P 95.3 0.015 3.3E-07 55.7 3.5 22 118-139 1-22 (129)
295 TIGR03499 FlhF flagellar biosy 95.3 0.17 3.6E-06 56.0 12.1 29 114-142 193-221 (282)
296 cd03222 ABC_RNaseL_inhibitor T 95.2 0.04 8.6E-07 56.2 6.6 113 115-249 25-146 (177)
297 cd01121 Sms Sms (bacterial rad 95.2 0.065 1.4E-06 61.3 9.0 49 102-150 69-117 (372)
298 TIGR01420 pilT_fam pilus retra 95.2 0.051 1.1E-06 61.9 8.2 109 115-235 122-231 (343)
299 PF01583 APS_kinase: Adenylyls 95.2 0.029 6.4E-07 55.3 5.1 35 115-149 2-36 (156)
300 KOG0651 26S proteasome regulat 95.2 0.099 2.1E-06 56.1 9.2 52 92-143 132-194 (388)
301 cd00267 ABC_ATPase ABC (ATP-bi 95.1 0.029 6.2E-07 56.2 5.1 122 116-249 26-154 (157)
302 KOG0733 Nuclear AAA ATPase (VC 95.1 0.12 2.6E-06 60.3 10.3 125 115-265 545-693 (802)
303 PF14532 Sigma54_activ_2: Sigm 95.1 0.011 2.5E-07 57.7 2.0 45 95-139 1-45 (138)
304 PRK12723 flagellar biosynthesi 95.1 0.22 4.8E-06 57.1 12.6 27 114-140 173-199 (388)
305 cd03238 ABC_UvrA The excision 95.1 0.085 1.8E-06 53.7 8.3 23 115-137 21-43 (176)
306 PF01582 TIR: TIR domain; Int 95.1 0.0083 1.8E-07 58.9 0.9 49 3-51 89-140 (141)
307 cd03228 ABCC_MRP_Like The MRP 95.0 0.075 1.6E-06 54.0 8.0 125 115-249 28-168 (171)
308 PRK12337 2-phosphoglycerate ki 95.0 0.022 4.7E-07 65.7 4.3 26 114-139 254-279 (475)
309 PRK06067 flagellar accessory p 95.0 0.058 1.3E-06 58.0 7.5 48 103-150 13-60 (234)
310 PTZ00301 uridine kinase; Provi 95.0 0.02 4.4E-07 60.0 3.8 29 115-143 3-31 (210)
311 KOG1947 Leucine rich repeat pr 95.0 0.0036 7.7E-08 75.4 -2.2 107 590-696 187-305 (482)
312 PTZ00494 tuzin-like protein; P 95.0 2 4.4E-05 48.9 19.1 209 43-264 302-544 (664)
313 KOG0738 AAA+-type ATPase [Post 95.0 0.15 3.2E-06 56.4 10.2 74 65-142 189-272 (491)
314 cd01129 PulE-GspE PulE/GspE Th 95.0 0.074 1.6E-06 58.1 8.1 101 100-215 68-168 (264)
315 COG1121 ZnuC ABC-type Mn/Zn tr 95.0 0.061 1.3E-06 57.3 7.1 59 186-247 147-211 (254)
316 PRK15429 formate hydrogenlyase 94.9 0.094 2E-06 65.9 10.1 50 90-139 374-423 (686)
317 PRK05480 uridine/cytidine kina 94.9 0.023 4.9E-07 60.0 3.9 27 113-139 4-30 (209)
318 KOG1514 Origin recognition com 94.9 0.63 1.4E-05 55.7 15.6 140 88-232 392-547 (767)
319 PRK12726 flagellar biosynthesi 94.9 0.7 1.5E-05 52.3 15.4 37 114-150 205-241 (407)
320 cd03240 ABC_Rad50 The catalyti 94.9 0.11 2.3E-06 54.6 8.7 59 189-249 132-196 (204)
321 PF07726 AAA_3: ATPase family 94.9 0.015 3.2E-07 54.8 1.9 29 118-146 2-30 (131)
322 COG0572 Udk Uridine kinase [Nu 94.8 0.033 7.1E-07 57.7 4.5 30 113-142 6-35 (218)
323 COG4608 AppF ABC-type oligopep 94.8 0.095 2.1E-06 55.9 8.1 125 114-240 38-176 (268)
324 COG0563 Adk Adenylate kinase a 94.8 0.085 1.8E-06 53.7 7.5 22 117-138 2-23 (178)
325 PF13604 AAA_30: AAA domain; P 94.8 0.072 1.6E-06 55.4 7.2 28 115-142 18-45 (196)
326 TIGR02858 spore_III_AA stage I 94.8 0.084 1.8E-06 57.6 7.9 119 113-238 109-233 (270)
327 cd01393 recA_like RecA is a b 94.8 0.11 2.3E-06 55.6 8.7 49 103-151 7-61 (226)
328 PRK06995 flhF flagellar biosyn 94.8 0.28 6.1E-06 57.7 12.6 27 115-141 256-282 (484)
329 cd03247 ABCC_cytochrome_bd The 94.7 0.11 2.4E-06 53.2 8.3 121 115-249 28-170 (178)
330 cd03230 ABC_DR_subfamily_A Thi 94.7 0.074 1.6E-06 54.2 6.9 125 114-248 25-168 (173)
331 PRK03839 putative kinase; Prov 94.7 0.024 5.2E-07 58.2 3.3 24 117-140 2-25 (180)
332 KOG0743 AAA+-type ATPase [Post 94.7 0.42 9.2E-06 54.4 13.2 150 116-300 236-414 (457)
333 PF00910 RNA_helicase: RNA hel 94.7 0.021 4.5E-07 53.0 2.5 26 118-143 1-26 (107)
334 PRK08233 hypothetical protein; 94.7 0.024 5.3E-07 58.2 3.3 26 115-140 3-28 (182)
335 PRK04040 adenylate kinase; Pro 94.7 0.03 6.5E-07 57.7 3.9 26 115-140 2-27 (188)
336 TIGR00235 udk uridine kinase. 94.7 0.03 6.4E-07 59.0 3.9 28 113-140 4-31 (207)
337 cd02019 NK Nucleoside/nucleoti 94.6 0.026 5.6E-07 47.6 2.8 23 117-139 1-23 (69)
338 cd03115 SRP The signal recogni 94.6 0.052 1.1E-06 55.3 5.5 26 117-142 2-27 (173)
339 PRK06762 hypothetical protein; 94.6 0.028 6.2E-07 56.8 3.5 25 115-139 2-26 (166)
340 TIGR03574 selen_PSTK L-seryl-t 94.6 0.17 3.6E-06 55.1 9.7 26 117-142 1-26 (249)
341 PRK05022 anaerobic nitric oxid 94.6 0.077 1.7E-06 64.0 7.7 50 90-139 185-234 (509)
342 COG0542 clpA ATP-binding subun 94.6 0.12 2.6E-06 63.5 9.1 154 91-264 169-346 (786)
343 PTZ00088 adenylate kinase 1; P 94.5 0.065 1.4E-06 57.0 6.2 93 117-215 8-105 (229)
344 COG0541 Ffh Signal recognition 94.5 0.93 2E-05 51.6 15.3 41 101-141 79-126 (451)
345 cd03281 ABC_MSH5_euk MutS5 hom 94.5 0.048 1E-06 57.5 5.2 23 115-137 29-51 (213)
346 cd03246 ABCC_Protease_Secretio 94.5 0.11 2.4E-06 52.9 7.7 126 115-249 28-169 (173)
347 PRK00625 shikimate kinase; Pro 94.5 0.028 6.1E-07 57.0 3.1 24 117-140 2-25 (173)
348 KOG0652 26S proteasome regulat 94.5 0.78 1.7E-05 47.9 13.4 164 91-280 170-372 (424)
349 cd03229 ABC_Class3 This class 94.5 0.073 1.6E-06 54.5 6.3 34 115-149 26-59 (178)
350 TIGR01069 mutS2 MutS2 family p 94.4 0.12 2.7E-06 64.9 9.3 185 114-316 321-522 (771)
351 cd02027 APSK Adenosine 5'-phos 94.4 0.18 3.9E-06 49.9 8.6 24 117-140 1-24 (149)
352 PRK09270 nucleoside triphospha 94.4 0.045 9.7E-07 58.7 4.6 31 112-142 30-60 (229)
353 PRK08356 hypothetical protein; 94.3 0.16 3.4E-06 52.9 8.4 21 116-136 6-26 (195)
354 COG0465 HflB ATP-dependent Zn 94.3 0.2 4.4E-06 59.8 10.1 152 89-265 147-334 (596)
355 PF08433 KTI12: Chromatin asso 94.2 0.11 2.4E-06 56.7 7.2 26 116-141 2-27 (270)
356 TIGR01360 aden_kin_iso1 adenyl 94.2 0.036 7.8E-07 57.3 3.4 26 114-139 2-27 (188)
357 cd03232 ABC_PDR_domain2 The pl 94.2 0.15 3.2E-06 53.0 7.9 23 115-137 33-55 (192)
358 PRK00131 aroK shikimate kinase 94.2 0.036 7.9E-07 56.4 3.3 25 115-139 4-28 (175)
359 COG4088 Predicted nucleotide k 94.1 0.11 2.4E-06 52.5 6.2 31 116-146 2-32 (261)
360 PRK12678 transcription termina 94.1 0.083 1.8E-06 62.0 6.1 92 115-209 416-516 (672)
361 PRK06547 hypothetical protein; 94.0 0.047 1E-06 55.4 3.7 27 113-139 13-39 (172)
362 PRK11388 DNA-binding transcrip 94.0 0.4 8.7E-06 59.8 12.7 50 90-139 323-372 (638)
363 cd03283 ABC_MutS-like MutS-lik 94.0 0.28 6.1E-06 51.1 9.5 23 116-138 26-48 (199)
364 PRK06217 hypothetical protein; 94.0 0.18 3.8E-06 51.9 8.0 23 117-139 3-25 (183)
365 PRK14528 adenylate kinase; Pro 94.0 0.12 2.7E-06 53.2 6.8 24 116-139 2-25 (186)
366 TIGR00150 HI0065_YjeE ATPase, 94.0 0.056 1.2E-06 51.9 3.8 25 115-139 22-46 (133)
367 PRK13947 shikimate kinase; Pro 94.0 0.04 8.8E-07 56.0 3.1 25 117-141 3-27 (171)
368 cd01122 GP4d_helicase GP4d_hel 94.0 0.32 7E-06 53.6 10.5 54 114-174 29-83 (271)
369 cd03237 ABC_RNaseL_inhibitor_d 93.9 0.2 4.4E-06 54.2 8.6 24 115-138 25-48 (246)
370 COG1428 Deoxynucleoside kinase 93.9 0.044 9.5E-07 56.0 3.1 26 115-140 4-29 (216)
371 TIGR02237 recomb_radB DNA repa 93.9 0.076 1.7E-06 56.0 5.2 44 108-151 5-48 (209)
372 cd00544 CobU Adenosylcobinamid 93.9 0.32 7E-06 49.1 9.4 80 117-205 1-82 (169)
373 PRK00279 adk adenylate kinase; 93.9 0.12 2.5E-06 54.9 6.5 23 117-139 2-24 (215)
374 KOG1970 Checkpoint RAD17-RFC c 93.9 0.16 3.4E-06 58.8 7.7 48 92-139 82-134 (634)
375 PRK00889 adenylylsulfate kinas 93.9 0.075 1.6E-06 54.3 4.8 28 114-141 3-30 (175)
376 KOG1969 DNA replication checkp 93.9 0.16 3.5E-06 60.6 7.9 76 113-208 324-399 (877)
377 COG1875 NYN ribonuclease and A 93.8 0.53 1.1E-05 52.0 11.2 25 113-137 243-267 (436)
378 smart00255 TIR Toll - interleu 93.8 0.097 2.1E-06 51.1 5.4 53 2-55 87-139 (140)
379 KOG0726 26S proteasome regulat 93.8 0.058 1.3E-06 57.0 3.9 54 90-143 183-247 (440)
380 PRK10820 DNA-binding transcrip 93.8 0.98 2.1E-05 54.7 15.0 51 88-138 200-250 (520)
381 PRK06731 flhF flagellar biosyn 93.8 0.56 1.2E-05 51.1 11.6 36 114-149 74-109 (270)
382 PRK13531 regulatory ATPase Rav 93.8 0.051 1.1E-06 63.2 3.8 46 92-141 20-65 (498)
383 PF00437 T2SE: Type II/IV secr 93.8 0.036 7.8E-07 61.1 2.5 128 92-234 104-232 (270)
384 cd02028 UMPK_like Uridine mono 93.8 0.065 1.4E-06 54.9 4.2 26 117-142 1-26 (179)
385 PRK08699 DNA polymerase III su 93.8 0.52 1.1E-05 53.1 11.7 85 196-291 114-202 (325)
386 cd03233 ABC_PDR_domain1 The pl 93.8 0.18 4E-06 52.8 7.7 27 114-140 32-58 (202)
387 PRK14529 adenylate kinase; Pro 93.8 0.15 3.2E-06 53.9 6.9 91 118-214 3-95 (223)
388 TIGR01351 adk adenylate kinase 93.8 0.12 2.6E-06 54.5 6.3 22 118-139 2-23 (210)
389 PRK11823 DNA repair protein Ra 93.8 0.23 4.9E-06 58.6 9.2 50 101-150 66-115 (446)
390 PF10236 DAP3: Mitochondrial r 93.7 1.5 3.3E-05 49.1 15.3 48 245-292 258-306 (309)
391 PRK03846 adenylylsulfate kinas 93.7 0.083 1.8E-06 55.2 5.0 37 113-149 22-58 (198)
392 cd03217 ABC_FeS_Assembly ABC-t 93.7 0.14 3.1E-06 53.5 6.7 24 115-138 26-49 (200)
393 PRK14526 adenylate kinase; Pro 93.7 0.14 3E-06 53.9 6.4 22 118-139 3-24 (211)
394 PF00560 LRR_1: Leucine Rich R 93.7 0.034 7.4E-07 35.1 1.2 21 569-589 1-21 (22)
395 COG0396 sufC Cysteine desulfur 93.6 0.43 9.4E-06 49.4 9.6 62 186-247 152-217 (251)
396 TIGR02788 VirB11 P-type DNA tr 93.6 0.083 1.8E-06 59.3 5.1 109 114-235 143-254 (308)
397 PRK10923 glnG nitrogen regulat 93.6 0.92 2E-05 54.4 14.4 48 91-138 137-184 (469)
398 cd01130 VirB11-like_ATPase Typ 93.6 0.069 1.5E-06 55.1 4.1 93 115-216 25-120 (186)
399 cd00227 CPT Chloramphenicol (C 93.6 0.056 1.2E-06 55.2 3.3 25 116-140 3-27 (175)
400 PF03308 ArgK: ArgK protein; 93.6 0.18 3.8E-06 53.6 6.9 42 101-142 15-56 (266)
401 PRK09280 F0F1 ATP synthase sub 93.6 0.17 3.7E-06 58.8 7.5 91 115-208 144-250 (463)
402 PF03205 MobB: Molybdopterin g 93.5 0.094 2E-06 51.2 4.6 34 116-149 1-35 (140)
403 cd01125 repA Hexameric Replica 93.5 0.41 8.9E-06 51.6 10.1 24 117-140 3-26 (239)
404 cd02025 PanK Pantothenate kina 93.5 0.049 1.1E-06 57.8 2.8 24 117-140 1-24 (220)
405 TIGR00416 sms DNA repair prote 93.5 0.25 5.5E-06 58.3 9.0 50 101-150 80-129 (454)
406 KOG0727 26S proteasome regulat 93.5 0.074 1.6E-06 54.9 3.8 51 93-143 156-217 (408)
407 KOG0927 Predicted transporter 93.4 0.14 3.1E-06 59.1 6.4 24 115-138 101-124 (614)
408 cd01428 ADK Adenylate kinase ( 93.4 0.31 6.6E-06 50.6 8.6 22 118-139 2-23 (194)
409 TIGR03600 phage_DnaB phage rep 93.4 0.99 2.2E-05 53.2 13.9 72 95-174 175-247 (421)
410 KOG1532 GTPase XAB1, interacts 93.4 0.072 1.6E-06 55.9 3.6 40 113-153 17-56 (366)
411 cd02023 UMPK Uridine monophosp 93.4 0.05 1.1E-06 56.8 2.6 23 117-139 1-23 (198)
412 TIGR00390 hslU ATP-dependent p 93.3 0.08 1.7E-06 60.3 4.3 51 93-143 13-75 (441)
413 PRK14723 flhF flagellar biosyn 93.3 0.57 1.2E-05 57.9 11.8 26 115-140 185-210 (767)
414 cd02024 NRK1 Nicotinamide ribo 93.3 0.055 1.2E-06 55.5 2.7 23 117-139 1-23 (187)
415 PF03969 AFG1_ATPase: AFG1-lik 93.3 0.15 3.3E-06 58.0 6.5 104 113-235 60-168 (362)
416 PRK13949 shikimate kinase; Pro 93.3 0.064 1.4E-06 54.4 3.1 24 117-140 3-26 (169)
417 PRK12597 F0F1 ATP synthase sub 93.2 0.19 4E-06 58.8 7.2 90 115-208 143-249 (461)
418 TIGR02322 phosphon_PhnN phosph 93.2 0.065 1.4E-06 54.9 3.1 25 116-140 2-26 (179)
419 COG4618 ArpD ABC-type protease 93.2 0.21 4.5E-06 57.4 7.2 22 116-137 363-384 (580)
420 PF00006 ATP-synt_ab: ATP synt 93.2 0.2 4.3E-06 52.7 6.6 87 116-208 16-117 (215)
421 PRK10751 molybdopterin-guanine 93.2 0.09 2E-06 53.0 3.9 28 114-141 5-32 (173)
422 COG0488 Uup ATPase components 93.2 0.22 4.8E-06 59.6 7.8 58 187-250 162-225 (530)
423 PRK05439 pantothenate kinase; 93.1 0.11 2.3E-06 57.7 4.7 30 112-141 83-112 (311)
424 KOG0739 AAA+-type ATPase [Post 93.1 1.2 2.5E-05 47.8 11.9 49 92-140 133-191 (439)
425 cd00071 GMPK Guanosine monopho 93.1 0.058 1.3E-06 52.6 2.3 26 117-142 1-26 (137)
426 cd03213 ABCG_EPDR ABCG transpo 93.0 0.28 6E-06 51.0 7.6 26 114-139 34-59 (194)
427 PF00560 LRR_1: Leucine Rich R 93.0 0.05 1.1E-06 34.3 1.2 19 641-659 2-20 (22)
428 cd03243 ABC_MutS_homologs The 93.0 0.1 2.2E-06 54.8 4.2 22 116-137 30-51 (202)
429 COG1102 Cmk Cytidylate kinase 93.0 0.077 1.7E-06 51.6 3.0 24 117-140 2-25 (179)
430 cd00464 SK Shikimate kinase (S 93.0 0.075 1.6E-06 52.8 3.2 22 118-139 2-23 (154)
431 PRK13948 shikimate kinase; Pro 93.0 0.075 1.6E-06 54.4 3.1 27 114-140 9-35 (182)
432 TIGR01039 atpD ATP synthase, F 93.0 0.25 5.5E-06 57.3 7.7 91 115-208 143-249 (461)
433 COG2274 SunT ABC-type bacterio 93.0 0.2 4.4E-06 62.0 7.4 23 115-137 499-521 (709)
434 smart00534 MUTSac ATPase domai 92.9 0.072 1.6E-06 55.0 2.9 21 117-137 1-21 (185)
435 KOG4308 LRR-containing protein 92.9 0.0012 2.6E-08 77.7 -11.5 36 663-698 145-184 (478)
436 cd03289 ABCC_CFTR2 The CFTR su 92.9 0.36 7.7E-06 53.2 8.4 25 115-139 30-54 (275)
437 cd02020 CMPK Cytidine monophos 92.9 0.075 1.6E-06 52.3 2.8 23 117-139 1-23 (147)
438 COG1066 Sms Predicted ATP-depe 92.9 0.52 1.1E-05 53.0 9.5 97 101-206 79-178 (456)
439 PHA02244 ATPase-like protein 92.8 0.22 4.7E-06 56.1 6.7 47 92-142 96-146 (383)
440 PRK15115 response regulator Gl 92.8 1.4 3.1E-05 52.4 14.2 48 92-139 134-181 (444)
441 COG3854 SpoIIIAA ncharacterize 92.8 0.31 6.7E-06 50.2 7.0 113 115-235 137-254 (308)
442 COG0703 AroK Shikimate kinase 92.8 0.084 1.8E-06 52.7 3.0 28 116-143 3-30 (172)
443 PRK13975 thymidylate kinase; P 92.8 0.093 2E-06 54.7 3.5 26 116-141 3-28 (196)
444 PRK13946 shikimate kinase; Pro 92.8 0.078 1.7E-06 54.6 2.9 25 115-139 10-34 (184)
445 cd02021 GntK Gluconate kinase 92.7 0.075 1.6E-06 52.7 2.7 22 117-138 1-22 (150)
446 TIGR00455 apsK adenylylsulfate 92.7 0.42 9.1E-06 49.2 8.3 27 114-140 17-43 (184)
447 PRK05057 aroK shikimate kinase 92.7 0.085 1.8E-06 53.7 3.1 26 115-140 4-29 (172)
448 PRK14531 adenylate kinase; Pro 92.7 0.25 5.4E-06 50.9 6.6 24 116-139 3-26 (183)
449 PF03266 NTPase_1: NTPase; In 92.7 0.13 2.8E-06 51.9 4.3 24 118-141 2-25 (168)
450 TIGR00708 cobA cob(I)alamin ad 92.7 0.64 1.4E-05 46.8 9.1 27 116-142 6-32 (173)
451 KOG3928 Mitochondrial ribosome 92.7 1.1 2.3E-05 50.4 11.5 53 244-299 404-460 (461)
452 PRK05201 hslU ATP-dependent pr 92.7 0.12 2.5E-06 59.1 4.2 51 92-142 15-77 (443)
453 KOG1051 Chaperone HSP104 and r 92.6 0.67 1.4E-05 58.0 11.0 104 93-209 563-673 (898)
454 COG1124 DppF ABC-type dipeptid 92.6 0.087 1.9E-06 55.0 2.9 23 115-137 33-55 (252)
455 KOG0736 Peroxisome assembly fa 92.6 0.47 1E-05 57.1 9.2 53 88-140 667-730 (953)
456 PF00625 Guanylate_kin: Guanyl 92.6 0.091 2E-06 54.1 3.1 32 115-146 2-33 (183)
457 cd03287 ABC_MSH3_euk MutS3 hom 92.6 0.17 3.7E-06 53.5 5.2 116 114-239 30-159 (222)
458 TIGR02782 TrbB_P P-type conjug 92.5 0.28 6.1E-06 54.6 7.1 89 116-215 133-223 (299)
459 COG5635 Predicted NTPase (NACH 92.5 0.53 1.2E-05 60.3 10.6 197 115-316 222-449 (824)
460 PF00158 Sigma54_activat: Sigm 92.5 0.08 1.7E-06 53.5 2.5 45 94-138 1-45 (168)
461 PF13306 LRR_5: Leucine rich r 92.5 0.35 7.7E-06 46.2 7.0 13 611-623 8-20 (129)
462 PLN02318 phosphoribulokinase/u 92.5 0.11 2.4E-06 61.6 3.9 29 111-139 61-89 (656)
463 TIGR03263 guanyl_kin guanylate 92.5 0.081 1.8E-06 54.2 2.6 24 116-139 2-25 (180)
464 TIGR03878 thermo_KaiC_2 KaiC d 92.5 0.14 3.1E-06 55.8 4.7 38 113-150 34-71 (259)
465 PRK14721 flhF flagellar biosyn 92.5 0.96 2.1E-05 52.4 11.5 25 114-138 190-214 (420)
466 COG0468 RecA RecA/RadA recombi 92.5 0.24 5.2E-06 53.9 6.2 48 104-151 49-96 (279)
467 COG1224 TIP49 DNA helicase TIP 92.4 0.2 4.4E-06 54.8 5.5 57 89-145 36-95 (450)
468 PRK14530 adenylate kinase; Pro 92.4 0.099 2.1E-06 55.4 3.2 23 117-139 5-27 (215)
469 PF06068 TIP49: TIP49 C-termin 92.4 0.17 3.6E-06 56.4 4.9 59 89-147 21-82 (398)
470 cd03282 ABC_MSH4_euk MutS4 hom 92.4 0.25 5.5E-06 51.6 6.2 116 114-240 28-157 (204)
471 KOG0062 ATPase component of AB 92.4 0.17 3.6E-06 58.2 5.0 124 115-240 106-261 (582)
472 PF13306 LRR_5: Leucine rich r 92.3 0.25 5.4E-06 47.3 5.7 61 586-648 7-67 (129)
473 PRK12339 2-phosphoglycerate ki 92.3 0.12 2.5E-06 53.7 3.5 25 115-139 3-27 (197)
474 PRK13657 cyclic beta-1,2-gluca 92.3 0.35 7.6E-06 59.8 8.3 24 115-138 361-384 (588)
475 PRK09435 membrane ATPase/prote 92.2 0.24 5.3E-06 55.5 6.2 41 102-142 43-83 (332)
476 TIGR00554 panK_bact pantothena 92.2 0.14 3E-06 56.4 4.1 28 113-140 60-87 (290)
477 PRK14738 gmk guanylate kinase; 92.2 0.13 2.8E-06 54.0 3.8 28 111-138 9-36 (206)
478 PRK15453 phosphoribulokinase; 92.2 0.19 4.1E-06 54.4 4.9 29 113-141 3-31 (290)
479 TIGR02524 dot_icm_DotB Dot/Icm 92.2 0.22 4.7E-06 56.8 5.8 95 115-215 134-231 (358)
480 PLN02459 probable adenylate ki 92.1 0.31 6.7E-06 52.5 6.5 94 117-216 31-129 (261)
481 PLN02674 adenylate kinase 92.1 0.34 7.3E-06 51.9 6.8 24 116-139 32-55 (244)
482 PRK13765 ATP-dependent proteas 92.1 0.15 3.4E-06 62.2 4.8 75 88-172 27-102 (637)
483 TIGR00176 mobB molybdopterin-g 92.1 0.15 3.3E-06 50.8 3.9 26 117-142 1-26 (155)
484 COG0467 RAD55 RecA-superfamily 92.1 0.21 4.6E-06 54.6 5.4 41 111-151 19-59 (260)
485 TIGR03877 thermo_KaiC_1 KaiC d 92.1 0.24 5.1E-06 53.4 5.7 48 103-150 9-56 (237)
486 CHL00060 atpB ATP synthase CF1 92.1 0.4 8.6E-06 56.1 7.7 53 115-171 161-214 (494)
487 PRK00409 recombination and DNA 92.1 0.3 6.6E-06 61.6 7.4 185 114-316 326-527 (782)
488 PLN02348 phosphoribulokinase 92.0 0.15 3.2E-06 57.9 4.1 31 112-142 46-76 (395)
489 PRK08154 anaerobic benzoate ca 92.0 0.23 5E-06 55.7 5.7 26 114-139 132-157 (309)
490 cd01135 V_A-ATPase_B V/A-type 92.0 0.3 6.6E-06 52.8 6.3 90 115-208 69-178 (276)
491 PF05970 PIF1: PIF1-like helic 92.0 0.26 5.6E-06 56.7 6.2 35 114-148 21-55 (364)
492 COG2401 ABC-type ATPase fused 92.0 0.32 7E-06 54.3 6.5 47 94-140 373-434 (593)
493 PRK14493 putative bifunctional 92.0 0.17 3.7E-06 55.3 4.5 34 116-150 2-35 (274)
494 COG0194 Gmk Guanylate kinase [ 92.0 0.14 3.1E-06 51.3 3.5 25 115-139 4-28 (191)
495 COG4619 ABC-type uncharacteriz 92.0 1.4 3E-05 43.4 9.9 23 116-138 30-52 (223)
496 PF03215 Rad17: Rad17 cell cyc 92.0 0.13 2.9E-06 61.3 3.9 60 88-149 15-77 (519)
497 PRK11174 cysteine/glutathione 91.9 0.34 7.5E-06 59.9 7.7 25 115-139 376-400 (588)
498 TIGR00764 lon_rel lon-related 91.9 0.24 5.1E-06 60.8 6.1 57 92-152 18-75 (608)
499 PRK06002 fliI flagellum-specif 91.9 0.23 5.1E-06 57.5 5.7 24 115-138 165-188 (450)
500 PRK00300 gmk guanylate kinase; 91.9 0.11 2.4E-06 54.5 2.9 25 115-139 5-29 (205)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=8.6e-126 Score=1227.63 Aligned_cols=971 Identities=36% Similarity=0.564 Sum_probs=805.6
Q ss_pred CCCCEEEeEeecCCccccccccCcHHHHHHHHHHhhccChHHHHHHHHHHHHHhhccCCCCCCCchhHHHHHHHHHHHHh
Q 001348 1 MNGQKVLPVFYHVDPSDVRKQTGRVGDAFVVHEKQFREMPEKVQKWRAVLTEASNLSGWDSKKIRPEAKLVDEIVKDILK 80 (1094)
Q Consensus 1 ~~~~~v~pvfy~vdps~vr~q~g~~~~~~~~~~~~~~~~~~~~~~w~~al~~~a~~~g~~~~~~~~e~~~i~~i~~~v~~ 80 (1094)
+.||+|+||||+|||||||+|+|+||+||++|+++ +..+++++||+||++||+++||++.+|++|+++|++||++|++
T Consensus 96 ~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~--~~~~~~~~w~~al~~~~~~~g~~~~~~~~E~~~i~~Iv~~v~~ 173 (1153)
T PLN03210 96 ELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQN--KTEDEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIANDVLG 173 (1153)
T ss_pred hcCceEEEEEecccHHHHhhccchHHHHHHHHhcc--cchhHHHHHHHHHHHHhCcCceecCCCCCHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999987 4678999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeec--hhhh--
Q 001348 81 KLNYFSVSSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANV--REES-- 156 (1094)
Q Consensus 81 ~l~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~--~~~~-- 156 (1094)
+++.++ +.+.+++|||++++++|.++|..+.+++++|+||||||+||||||+++|++++.+|++.+|+... +...
T Consensus 174 ~l~~~~-~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~ 252 (1153)
T PLN03210 174 KLNLTP-SNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEI 252 (1153)
T ss_pred hhcccc-CcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhh
Confidence 999887 78889999999999999999988888899999999999999999999999999999999998642 1110
Q ss_pred -c-----cCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCChHhHHHHhcCCCCCCCCceEEEE
Q 001348 157 -E-----KGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKFRQLEYLAGGLDRFGLGSRIIVT 230 (1094)
Q Consensus 157 -~-----~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIiiT 230 (1094)
. .......++++++.++...... .......++++|++||+||||||||+.++|+.+.+...|+++||+||||
T Consensus 253 ~~~~~~~~~~~~~~l~~~~l~~il~~~~~--~~~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiT 330 (1153)
T PLN03210 253 YSSANPDDYNMKLHLQRAFLSEILDKKDI--KIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVI 330 (1153)
T ss_pred cccccccccchhHHHHHHHHHHHhCCCCc--ccCCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEE
Confidence 0 0011345677777777644321 1112467899999999999999999999999999988999999999999
Q ss_pred eCChhhhhhcCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHHHHHhhhhcCCCHHHHHHH
Q 001348 231 SRDKQVLEKYGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAIKVLASFFHRKSKLDWEIA 310 (1094)
Q Consensus 231 TR~~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg~~L~~~~~~~w~~~ 310 (1094)
||+++++..++++++|+|+.|+.++|++||+++||++..+++++.+++++|+++|+|+|||++++|+.|++++..+|+.+
T Consensus 331 Trd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~ 410 (1153)
T PLN03210 331 TKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDM 410 (1153)
T ss_pred eCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHH
Confidence 99999998888889999999999999999999999988788889999999999999999999999999999999999999
Q ss_pred HHHhhcCCCccHHHHHHHhhhcccH-HhhhhhcccccccCCcCHHHHHHHHhC-CCccccchhhhhccCceeEeCCEEEe
Q 001348 311 LQNLKQISGPEILAVLKISYDELNW-EAKNLFLDIACFFKGEDINFVTLILDN-HYSVHYGLSVLVDKSLVRISRNKLEM 388 (1094)
Q Consensus 311 l~~l~~~~~~~i~~~L~~sy~~L~~-~~k~~fl~~a~f~~~~~~~~~~~il~~-~~~~~~~l~~L~~~sLi~~~~~~~~m 388 (1094)
+++++...+.+|.++|++||++|++ .+|.||++|||||++.+++.+..+++. ++.+..+++.|+++|||++..+++.|
T Consensus 411 l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~~~~~~M 490 (1153)
T PLN03210 411 LPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVREDIVEM 490 (1153)
T ss_pred HHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEcCCeEEh
Confidence 9999998888999999999999976 599999999999999999999999998 88889999999999999999999999
Q ss_pred eHHHHHHHHHHHhhcccCCCCcccccccchhhhhHhhccCCCCceeeeecccccccccccCccccCCCCCceEEEEeCCC
Q 001348 389 HDLLQDMGREIVSQESEKEPGKRSRLWYHEDIYHVLKKNKGTDTIEGIFLDLSKIRDINLNPQAFANMPNLRFLKFYMPK 468 (1094)
Q Consensus 389 Hdli~~~~~~i~~~e~~~~~~~~~rl~~~~di~~vl~~~~~~~~~~~i~ldls~~~~~~l~~~~f~~l~~Lr~L~l~~n~ 468 (1094)
||++|+||++++++++ .+||+|+|+|+++|+++++.+++|+..+++|++|++....+.+.+.+|.+|++|++|+++.+.
T Consensus 491 HdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~ 569 (1153)
T PLN03210 491 HSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKK 569 (1153)
T ss_pred hhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEeccc
Confidence 9999999999999997 789999999999999999999999999999999999999999999999999999999998775
Q ss_pred CCCccccccccccCCccccCcccccEEEecCCCCCCCCCCCCccccceeeccccccccccccCCCCCcCcccCCCCCCCC
Q 001348 469 LFGISDMVCKLHLPQGLQYLSDELRYLHWHGYPLKMLPSNFTPENLIELNLLYSRIEQLWKGKKGCKSLRCFPNNIHFRS 548 (1094)
Q Consensus 469 l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~~~~~~~~~~ 548 (1094)
... ......++|.++..+|.+||+|+|.+|+++.+|..|.+.+|++|+|++|+++.+|.+++.+++|+
T Consensus 570 ~~~--~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk---------- 637 (1153)
T PLN03210 570 WDQ--KKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLR---------- 637 (1153)
T ss_pred ccc--cccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCC----------
Confidence 432 12245678999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEeccCCCCCcccCCccC--CccEEEecc-CCCCccccccccccccceeecccccccccchhhhhcCCcccEEeccCC
Q 001348 549 PISLNFSYCVNFKEFPQISG--NVRELYLRG-TPIEYVPSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNC 625 (1094)
Q Consensus 549 l~~L~Ls~~~~l~~~p~~~~--~L~~L~L~~-~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~ 625 (1094)
.|+|++|..++.+|+... +|+.|+|++ +.+..+|.+++++++|+.|++++|..++.+|..+ ++++|+.|++++|
T Consensus 638 --~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc 714 (1153)
T PLN03210 638 --NIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGC 714 (1153)
T ss_pred --EEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCC
Confidence 999999999999998665 999999999 5688999999999999999999999999999876 6999999999999
Q ss_pred cccCccchhhcccCccceeeccCcccccccchhhccCCCcEEecCCCCCCC------CC-CccccCCCcccEEecCCcc-
Q 001348 626 SKLESFPEILEKMGCLEDIDLEGTAITELPSSIEYLGGLTTLNLTGCSKLD------NL-PENLGNLKSLKMLCANESA- 697 (1094)
Q Consensus 626 ~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~------~l-p~~l~~l~~L~~L~l~~~~- 697 (1094)
..++.+|.. ..+|+.|++++|.++.+|..+ .+++|+.|.+.++.... .+ |......++|+.|++++|.
T Consensus 715 ~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~ 790 (1153)
T PLN03210 715 SRLKSFPDI---STNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPS 790 (1153)
T ss_pred CCccccccc---cCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCC
Confidence 998888865 467999999999999999876 68899999988754211 11 1122335789999999984
Q ss_pred CccCCccccCCCCCcEEEccCCC-CCCCCCCCCCCCCCCEEeCCCCC-CCCCCccccCCCCCCeeecCCCCCcccchhhc
Q 001348 698 ISQLPSSITNLNELQVVWCSGCR-GLILPPSFSGLSYLTELDLSCCN-LIEIPQDIGCLSLLRSLDLRKNNFEYLPASMK 775 (1094)
Q Consensus 698 i~~~p~~l~~l~~L~~L~l~~~~-~~~lp~~l~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~ 775 (1094)
+..+|.+++++++|+.|++++|. ...+|..+ ++++|+.|+|++|. +..+|.. .++|+.|+|++|.++.+|.++.
T Consensus 791 l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~si~ 866 (1153)
T PLN03210 791 LVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPWWIE 866 (1153)
T ss_pred ccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCccChHHHh
Confidence 56789999999999999999986 55677655 79999999999985 4456643 4689999999999999999999
Q ss_pred CCCCCCEEEccCCCCCCCCCccc---cccccccccccccccccCCCCcchhhhcccccccccCCCccccccCceeeccCc
Q 001348 776 HLSKLKSLDLSCCNMLQSLPELP---LQLKFLQAKDCKQLQSLPEIPSCLEMVDVCKLETLYELPQSFLEFGTEFMFTNC 852 (1094)
Q Consensus 776 ~l~~L~~L~L~~~~~l~~lp~~~---~~L~~L~~~~c~~l~~~~~~p~~l~~l~~~~l~~L~~l~~~~~~~~~~~~~~nc 852 (1094)
.+++|+.|+|++|+.+..+|..+ .+|+.|.+.+|.++..++..........+... . .+..+......|.||
T Consensus 867 ~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n-~-----~~~~p~~~~l~f~nC 940 (1153)
T PLN03210 867 KFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDN-I-----HSKLPSTVCINFINC 940 (1153)
T ss_pred cCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhccc-c-----cccCCchhccccccc
Confidence 99999999999999999998654 45666788899998876532111111111100 0 011122344679999
Q ss_pred cccCHHHhhhhhhhHHHHHHHHHHhhhhhhccCCCCCceeEEEeCCCCCCCCccccCCCceEE-EEcCCCCCCCcceeEE
Q 001348 853 LNLNKSACNKLTDSQLRVQQMATASLRLCYEKKFRTPHGISICLPGSETPDWFSYQSSGSLLT-IQLQQHSCNRRFIGFA 931 (1094)
Q Consensus 853 ~~L~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~iP~wf~~~~~g~~v~-~~lp~~~~~~~~~gf~ 931 (1094)
++|++.+. + +. + .....+++||.++|+||.||+.|++++ |++|+.|++..|.||+
T Consensus 941 ~~L~~~a~--l-------~~-~--------------~~~~~~~l~g~evp~~f~hr~~g~sl~~i~l~~~~~~~~~~~f~ 996 (1153)
T PLN03210 941 FNLDQEAL--L-------QQ-Q--------------SIFKQLILSGEEVPSYFTHRTTGASLTNIPLLHISPCQPFFRFR 996 (1153)
T ss_pred cCCCchhh--h-------cc-c--------------ccceEEECCCccCchhccCCcccceeeeeccCCcccCCCccceE
Confidence 99986542 1 10 0 012357899999999999999999999 9999999988899999
Q ss_pred EEEEEcccccCCCCCceEEEEEEEeecCCC-ceeecCCCccccccccCCCCCcCCCCCeEEEEEEcCC--CCCC-CCCCC
Q 001348 932 YCAVIGSEEVNDGAGYHFGVKCSYDFETRT-SCETKSDDRICYLSAATDNMDELIELDHILLGFVPCL--DVSL-PNGDH 1007 (1094)
Q Consensus 932 ~c~v~~~~~~~~~~~~~~~~~c~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~dh~~~~~~~~~--~~~~-~~~~~ 1007 (1094)
+|+|+++..... ....+.++|.|.|++.. ..+.......+|. ... ..+|++++...+. .... ..+..
T Consensus 997 ~c~v~~~~~~~~-~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~----~~~----~~~~l~~~~~~~~~~~~~~~~~~~~ 1067 (1153)
T PLN03210 997 ACAVVDSESFFI-ISVSFDIQVCCRFIDRLGNHFDSPYQPHVFS----VTK----KGSHLVIFDCCFPLNEDNAPLAELN 1067 (1153)
T ss_pred EEEEEecCcccc-CCCceeEEEEEEEECCCCCccccCCCceeEe----eec----cccceEEecccccccccccchhccC
Confidence 999998876522 22366788888887542 1111111000110 011 1556655432111 0000 01122
Q ss_pred ceeEEEEEEEeeCCCCCCCCcEEEEecceEEecCCC
Q 001348 1008 QTAASFKFSLYNASTNNPIGHKVKCCGVCPLYTNPN 1043 (1094)
Q Consensus 1008 ~~~~~~~f~~~~~~~~~~~~~~vk~cGv~~~y~~~~ 1043 (1094)
.+.|+|+|.+.+... ..+||+|||+++|+.++
T Consensus 1068 ~~~~~~~f~~~~~~~----~~~~~~cg~~~~~~~~~ 1099 (1153)
T PLN03210 1068 YDHVDIQFRLTNKNS----QLKLKGCGIRLSEDDSS 1099 (1153)
T ss_pred CceeeEEEEEecCCC----CeEEEeeeEEEeccCCC
Confidence 345889999876432 25999999999997753
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=9.7e-60 Score=577.92 Aligned_cols=631 Identities=27% Similarity=0.322 Sum_probs=447.8
Q ss_pred eehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHH---HhccccceEEeeechhhhccCCChHHHHHHHHH
Q 001348 95 IGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQ---ISRKFESKCFMANVREESEKGGGLVHLRDRLLS 171 (1094)
Q Consensus 95 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~---~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 171 (1094)
||.+..++++.+.|..++. .+|||+||||+||||||+.++|+ ++++|+..+|+.+..+ +....++++|+.
T Consensus 161 VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~-----f~~~~iq~~Il~ 233 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKE-----FTTRKIQQTILE 233 (889)
T ss_pred ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEccc-----ccHHhHHHHHHH
Confidence 9999999999999976543 89999999999999999999993 7899999999986553 788899999999
Q ss_pred hhhccCCcccC--CCc-hHHHHHHhcCCeEEEEEecCCChHhHHHHhcCCCCCCCCceEEEEeCChhhhhh-cCcCeEEE
Q 001348 172 QILDESIRIET--PYI-PHYIRERLQCMKVFIVLDDVNKFRQLEYLAGGLDRFGLGSRIIVTSRDKQVLEK-YGVDHIYE 247 (1094)
Q Consensus 172 ~l~~~~~~~~~--~~~-~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~-~~~~~~~~ 247 (1094)
.+...+..... .+. +..+.+.|++||++|||||||+..+|+.+..+++....||+|++|||++.|+.. +++...++
T Consensus 234 ~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~ 313 (889)
T KOG4658|consen 234 RLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIE 313 (889)
T ss_pred HhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCcccc
Confidence 88754433222 234 888999999999999999999999999999999988889999999999999998 88889999
Q ss_pred ccCCCHHHHHHHHHhhcccCC-CCCchHHHHHHHHHHHhCCCchHHHHHhhhhcCC-CHHHHHHHHHHhhcC-----C--
Q 001348 248 VEELNNIEALELFCKYAFRQN-HHPQDLMVISGRVVDYARGNPLAIKVLASFFHRK-SKLDWEIALQNLKQI-----S-- 318 (1094)
Q Consensus 248 l~~L~~~ea~~Lf~~~af~~~-~~~~~~~~~~~~i~~~~~GlPLal~~lg~~L~~~-~~~~w~~~l~~l~~~-----~-- 318 (1094)
++.|+.+|||+||++.||... ...+.+.++|++++++|+|+|||+.++|+.|+.| +..+|+.+...+... +
T Consensus 314 v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~ 393 (889)
T KOG4658|consen 314 VECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGM 393 (889)
T ss_pred ccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCch
Confidence 999999999999999999763 3445589999999999999999999999999988 677999999988665 1
Q ss_pred CccHHHHHHHhhhcccHHhhhhhcccccccCCcCHHHHHH--HHhC-CCc------------cccchhhhhccCceeEeC
Q 001348 319 GPEILAVLKISYDELNWEAKNLFLDIACFFKGEDINFVTL--ILDN-HYS------------VHYGLSVLVDKSLVRISR 383 (1094)
Q Consensus 319 ~~~i~~~L~~sy~~L~~~~k~~fl~~a~f~~~~~~~~~~~--il~~-~~~------------~~~~l~~L~~~sLi~~~~ 383 (1094)
...|..+|++|||.|+++.|.||+|||+||+++.++...+ .|.+ ||. +...+..|++++|+...+
T Consensus 394 ~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~ 473 (889)
T KOG4658|consen 394 EESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEER 473 (889)
T ss_pred hhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcc
Confidence 3568999999999999999999999999999999877443 3444 743 233489999999999875
Q ss_pred -----CEEEeeHHHHHHHHHHHhhcccCCCCcccccccchhhhhHhhccCCCCceeeeecccccccccccCccccCCCCC
Q 001348 384 -----NKLEMHDLLQDMGREIVSQESEKEPGKRSRLWYHEDIYHVLKKNKGTDTIEGIFLDLSKIRDINLNPQAFANMPN 458 (1094)
Q Consensus 384 -----~~~~mHdli~~~~~~i~~~e~~~~~~~~~rl~~~~di~~vl~~~~~~~~~~~i~ldls~~~~~~l~~~~f~~l~~ 458 (1094)
..+.|||++++||.+++.+.+.+... .+ .-+-...
T Consensus 474 ~~~~~~~~kmHDvvRe~al~ias~~~~~~e~---~i----------------------v~~~~~~--------------- 513 (889)
T KOG4658|consen 474 DEGRKETVKMHDVVREMALWIASDFGKQEEN---QI----------------------VSDGVGL--------------- 513 (889)
T ss_pred cccceeEEEeeHHHHHHHHHHhccccccccc---eE----------------------EECCcCc---------------
Confidence 67999999999999999855422110 00 0000000
Q ss_pred ceEEEEeCCCCCCccccccccccCCccccCcccccEEEecCCCCCCCCCCCCccccceeeccccc--ccccccc-CCCCC
Q 001348 459 LRFLKFYMPKLFGISDMVCKLHLPQGLQYLSDELRYLHWHGYPLKMLPSNFTPENLIELNLLYSR--IEQLWKG-KKGCK 535 (1094)
Q Consensus 459 Lr~L~l~~n~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~--i~~l~~~-~~~l~ 535 (1094)
...|..... ...|...+.+|.+..++......+|++|-+..|. +..+... +..++
T Consensus 514 --------------------~~~~~~~~~--~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~ 571 (889)
T KOG4658|consen 514 --------------------SEIPQVKSW--NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLP 571 (889)
T ss_pred --------------------cccccccch--hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCc
Confidence 001111100 2456666666666666666666677777777775 4444332 56677
Q ss_pred cCcccCCCCCCCCCeEEeccCCCCCcccCCccC---CccEEEeccCCCCccccccccccccceeecccccccccchhhhh
Q 001348 536 SLRCFPNNIHFRSPISLNFSYCVNFKEFPQISG---NVRELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILESISTSIC 612 (1094)
Q Consensus 536 ~L~~~~~~~~~~~l~~L~Ls~~~~l~~~p~~~~---~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~ 612 (1094)
.|+ +|||++|..+..+|...+ +||+|+|+++.+..+|.++++|+.|.+||+..+.....+|..+.
T Consensus 572 ~Lr------------VLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~ 639 (889)
T KOG4658|consen 572 LLR------------VLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILL 639 (889)
T ss_pred ceE------------EEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhh
Confidence 777 999999999999998887 89999999999999999999999999999999888888888777
Q ss_pred cCCcccEEeccCCc--ccCccchhhcccCccceeeccCcccccccchhhccCCCc----EEecCCCCCCCCCCccccCCC
Q 001348 613 KLKSLLKLCLDNCS--KLESFPEILEKMGCLEDIDLEGTAITELPSSIEYLGGLT----TLNLTGCSKLDNLPENLGNLK 686 (1094)
Q Consensus 613 ~l~~L~~L~L~~~~--~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~----~L~L~~~~~~~~lp~~l~~l~ 686 (1094)
.|.+|++|.+..-. .....-..+.++.+|+.|....... .+-..+..++.|. .+.+.+ ......+..+..+.
T Consensus 640 ~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~~~-~~~~~~~~~~~~l~ 717 (889)
T KOG4658|consen 640 ELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLSIEG-CSKRTLISSLGSLG 717 (889)
T ss_pred hcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhhhcc-cccceeeccccccc
Confidence 79999999987643 1111223334445555554433332 1111122223332 223222 22344555677778
Q ss_pred cccEEecCCccCccCCc-ccc-----C-CCCCcEEEccCCCCCCCCCCCCCCCCCCEEeCCCCCCCC-CCccccCCCCCC
Q 001348 687 SLKMLCANESAISQLPS-SIT-----N-LNELQVVWCSGCRGLILPPSFSGLSYLTELDLSCCNLIE-IPQDIGCLSLLR 758 (1094)
Q Consensus 687 ~L~~L~l~~~~i~~~p~-~l~-----~-l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~ 758 (1094)
+|+.|.+.++.+.+... ... . +++|..+.+.+|.....+.+..-.++|+.|.+..|...+ +.+....+..++
T Consensus 718 ~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~ 797 (889)
T KOG4658|consen 718 NLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELK 797 (889)
T ss_pred CcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcc
Confidence 88888887777764321 111 1 223444444555555555555566777777777776554 333333444444
Q ss_pred eeecCCCCCcccchhhcCCCCCCEEEccCCCCCCCCCccccccccccccccccccccCC
Q 001348 759 SLDLRKNNFEYLPASMKHLSKLKSLDLSCCNMLQSLPELPLQLKFLQAKDCKQLQSLPE 817 (1094)
Q Consensus 759 ~L~L~~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~~~c~~l~~~~~ 817 (1094)
.+.+..+.+..++ ...++.+.+.+...|-.+..|..+.+..|+++..+|.
T Consensus 798 ~~i~~f~~~~~l~---------~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~ 847 (889)
T KOG4658|consen 798 ELILPFNKLEGLR---------MLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPL 847 (889)
T ss_pred cEEecccccccce---------eeecCCCCceeEecccCccchhheehhcCcccccCcc
Confidence 4444444333322 1112222222222232333466666667777666664
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.3e-36 Score=337.44 Aligned_cols=261 Identities=33% Similarity=0.493 Sum_probs=205.8
Q ss_pred hhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHH--HhccccceEEeeechhhhccCCChHHHHHHHHHhhh
Q 001348 97 LDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQ--ISRKFESKCFMANVREESEKGGGLVHLRDRLLSQIL 174 (1094)
Q Consensus 97 r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~--~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~ 174 (1094)
||+++++|.+.|....++.++|+|+||||+||||||++++++ ++++|+.++|+...+. ....+++++++.++.
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~-----~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKN-----PSLEQLLEQILRQLG 75 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES------SCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccc-----ccccccccccccccc
Confidence 789999999999876688999999999999999999999997 8899999999875443 445788888888887
Q ss_pred ccCCcc---cCCC-chHHHHHHhcCCeEEEEEecCCChHhHHHHhcCCCCCCCCceEEEEeCChhhhhhcCc-CeEEEcc
Q 001348 175 DESIRI---ETPY-IPHYIRERLQCMKVFIVLDDVNKFRQLEYLAGGLDRFGLGSRIIVTSRDKQVLEKYGV-DHIYEVE 249 (1094)
Q Consensus 175 ~~~~~~---~~~~-~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~-~~~~~l~ 249 (1094)
...... .+.. ....+++.|+++++||||||||+...|+.+...++.+..||+||||||++.++..++. ...|+++
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~ 155 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELE 155 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECS
T ss_pred ccccccccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccc
Confidence 653322 1222 2788999999999999999999999999998888777889999999999998876644 6899999
Q ss_pred CCCHHHHHHHHHhhcccCC-CCCchHHHHHHHHHHHhCCCchHHHHHhhhhcCC-CHHHHHHHHHHhhcCC------Ccc
Q 001348 250 ELNNIEALELFCKYAFRQN-HHPQDLMVISGRVVDYARGNPLAIKVLASFFHRK-SKLDWEIALQNLKQIS------GPE 321 (1094)
Q Consensus 250 ~L~~~ea~~Lf~~~af~~~-~~~~~~~~~~~~i~~~~~GlPLal~~lg~~L~~~-~~~~w~~~l~~l~~~~------~~~ 321 (1094)
+|+.+||++||.+.++... ...+...+.+++|+++|+|+|||++++|++|+.+ +..+|+.+++++.... ...
T Consensus 156 ~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~ 235 (287)
T PF00931_consen 156 PLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRS 235 (287)
T ss_dssp S--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999998655 3445566789999999999999999999999654 6688999998776543 356
Q ss_pred HHHHHHHhhhcccHHhhhhhcccccccCCcCH--HHHHHHHhC
Q 001348 322 ILAVLKISYDELNWEAKNLFLDIACFFKGEDI--NFVTLILDN 362 (1094)
Q Consensus 322 i~~~L~~sy~~L~~~~k~~fl~~a~f~~~~~~--~~~~~il~~ 362 (1094)
+..++..||+.|+++.|+||++||+||.++.+ +.+..+|.+
T Consensus 236 ~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~ 278 (287)
T PF00931_consen 236 VFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVA 278 (287)
T ss_dssp HHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT
T ss_pred ccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHH
Confidence 99999999999999999999999999999875 445555655
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.7e-32 Score=354.26 Aligned_cols=371 Identities=22% Similarity=0.256 Sum_probs=235.9
Q ss_pred CCCCcccccccchhhhhHhhccCCCCceeeeecccccccccccCccccCCCCCceEEEEeCCCCCCccccccccccCCcc
Q 001348 406 KEPGKRSRLWYHEDIYHVLKKNKGTDTIEGIFLDLSKIRDINLNPQAFANMPNLRFLKFYMPKLFGISDMVCKLHLPQGL 485 (1094)
Q Consensus 406 ~~~~~~~rl~~~~di~~vl~~~~~~~~~~~i~ldls~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~~~~~~~~~~l~~~l 485 (1094)
.+|+++.+.|...+-+......+.....+...+|++.+......+.+|..+++|+.|++++|.+.+ .+|.++
T Consensus 42 ~~~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~--------~ip~~~ 113 (968)
T PLN00113 42 NDPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSG--------PIPDDI 113 (968)
T ss_pred CCCcccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCC--------cCChHH
Confidence 345566677865433222222222223355667777766555557889999999999999998754 567777
Q ss_pred ccCcccccEEEecCCCCCCCCCCCCccccceeeccccccc-cccccCCCCCcCcccCCCCCCCCCeEEeccCCCCCcccC
Q 001348 486 QYLSDELRYLHWHGYPLKMLPSNFTPENLIELNLLYSRIE-QLWKGKKGCKSLRCFPNNIHFRSPISLNFSYCVNFKEFP 564 (1094)
Q Consensus 486 ~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~i~-~l~~~~~~l~~L~~~~~~~~~~~l~~L~Ls~~~~l~~~p 564 (1094)
+....+|++|++++|.+....+...+.+|++|+|++|.+. .++..+..+++|+ .|++++|.....+|
T Consensus 114 ~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~------------~L~L~~n~l~~~~p 181 (968)
T PLN00113 114 FTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLK------------VLDLGGNVLVGKIP 181 (968)
T ss_pred hccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCC------------EEECccCcccccCC
Confidence 6445689999999999875444456789999999999987 5566677788887 67776665555555
Q ss_pred CccC---CccEEEeccCCCC-ccccccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCc
Q 001348 565 QISG---NVRELYLRGTPIE-YVPSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGC 640 (1094)
Q Consensus 565 ~~~~---~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~ 640 (1094)
..+. +|++|+|++|.+. .+|..++++++|++|+|++|.+.+.+|..++++++|++|++++|...+.+|..++++++
T Consensus 182 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 261 (968)
T PLN00113 182 NSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKN 261 (968)
T ss_pred hhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCC
Confidence 4333 6666777666665 45666666667777777666666666666666667777777666666666666666666
Q ss_pred cceeeccCcccc-cccchhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCc-cCCccccCCCCCcEEEccC
Q 001348 641 LEDIDLEGTAIT-ELPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAIS-QLPSSITNLNELQVVWCSG 718 (1094)
Q Consensus 641 L~~L~L~~~~i~-~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~-~~p~~l~~l~~L~~L~l~~ 718 (1094)
|++|++++|.+. .+|..+.++++|++|++++|.+.+.+|..+.++++|+.|++++|.+. .+|..+..+++|+.|++++
T Consensus 262 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 341 (968)
T PLN00113 262 LQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWS 341 (968)
T ss_pred CCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcC
Confidence 666666666665 45666666666666666666666666666666666666666666655 3455566666666666666
Q ss_pred CCCC-CCCCCCCCCCCCCEEeCCCCCCCC-CCccccCCCCCCeeecCCCCCc-ccchhhcCCCCCCEEEccCCCCCCCCC
Q 001348 719 CRGL-ILPPSFSGLSYLTELDLSCCNLIE-IPQDIGCLSLLRSLDLRKNNFE-YLPASMKHLSKLKSLDLSCCNMLQSLP 795 (1094)
Q Consensus 719 ~~~~-~lp~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~~~~l~~lp 795 (1094)
|... .+|..+..+++|+.|+|++|+++. +|..+..+++|+.|++++|++. .+|..+..+++|+.|+|++|++.+.+|
T Consensus 342 n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p 421 (968)
T PLN00113 342 NKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELP 421 (968)
T ss_pred CCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECC
Confidence 6533 455555556666666666665542 4444444444444444444444 344444444444444444444444444
Q ss_pred c
Q 001348 796 E 796 (1094)
Q Consensus 796 ~ 796 (1094)
.
T Consensus 422 ~ 422 (968)
T PLN00113 422 S 422 (968)
T ss_pred h
Confidence 3
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=2.9e-30 Score=336.51 Aligned_cols=361 Identities=25% Similarity=0.324 Sum_probs=171.7
Q ss_pred CccccCCCCCceEEEEeCCCCCCccccccccccCCccccCcccccEEEecCCCCC-CCCCCC-Cccccceeeccccccc-
Q 001348 449 NPQAFANMPNLRFLKFYMPKLFGISDMVCKLHLPQGLQYLSDELRYLHWHGYPLK-MLPSNF-TPENLIELNLLYSRIE- 525 (1094)
Q Consensus 449 ~~~~f~~l~~Lr~L~l~~n~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~-~lp~~~-~~~~L~~L~L~~n~i~- 525 (1094)
.+..|.++++|++|++++|.+.+ .+|..+..+ .+|++|++++|.+. .+|..+ .+.+|++|++++|++.
T Consensus 180 ~p~~~~~l~~L~~L~L~~n~l~~--------~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 250 (968)
T PLN00113 180 IPNSLTNLTSLEFLTLASNQLVG--------QIPRELGQM-KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTG 250 (968)
T ss_pred CChhhhhCcCCCeeeccCCCCcC--------cCChHHcCc-CCccEEECcCCccCCcCChhHhcCCCCCEEECcCceecc
Confidence 34445555555555555554432 233333333 24555555555443 233332 2445555555555443
Q ss_pred cccccCCCCCcCccc-----------CCC-CCCCCCeEEeccCCCCCcccCCccC---CccEEEeccCCCC-cccccccc
Q 001348 526 QLWKGKKGCKSLRCF-----------PNN-IHFRSPISLNFSYCVNFKEFPQISG---NVRELYLRGTPIE-YVPSSIDC 589 (1094)
Q Consensus 526 ~l~~~~~~l~~L~~~-----------~~~-~~~~~l~~L~Ls~~~~l~~~p~~~~---~L~~L~L~~~~l~-~lp~~i~~ 589 (1094)
.++..+..+++|+.+ |.. ..+.+|+.|++++|.....+|..+. +|++|++++|.+. .+|..+..
T Consensus 251 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 330 (968)
T PLN00113 251 PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS 330 (968)
T ss_pred ccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhc
Confidence 223333333333310 000 0123334566655544444443322 5555555555554 34555555
Q ss_pred ccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccCcccc-cccchhhccCCCcEEe
Q 001348 590 LAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEGTAIT-ELPSSIEYLGGLTTLN 668 (1094)
Q Consensus 590 L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~-~lp~~l~~l~~L~~L~ 668 (1094)
+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+. .+|..++.+++|+.|+
T Consensus 331 l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ 410 (968)
T PLN00113 331 LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVR 410 (968)
T ss_pred CCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEE
Confidence 555555555555555555555555555555555555555555555555555555555555544 4444555555555555
Q ss_pred cCCCCCCCCCCccccCCCcccEEecCCccCcc-CCccccCCCCCcEEEccCCCCC-CCCCCCCCCCCCCEEeCCCCCCCC
Q 001348 669 LTGCSKLDNLPENLGNLKSLKMLCANESAISQ-LPSSITNLNELQVVWCSGCRGL-ILPPSFSGLSYLTELDLSCCNLIE 746 (1094)
Q Consensus 669 L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~-~p~~l~~l~~L~~L~l~~~~~~-~lp~~l~~l~~L~~L~Ls~n~l~~ 746 (1094)
+++|.+.+.+|..+.++++|+.|++++|.++. +|..+..+++|+.|++++|... .+|. ....++|+.|+|++|+++.
T Consensus 411 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~-~~~~~~L~~L~ls~n~l~~ 489 (968)
T PLN00113 411 LQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD-SFGSKRLENLDLSRNQFSG 489 (968)
T ss_pred CcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCc-ccccccceEEECcCCccCC
Confidence 55555555555555555555555555555542 2333444555555555555432 2222 2233445555555554442
Q ss_pred -CCccccCCCCCCeeecCCCCCc-ccchhhcCCCCCCEEEccCCCCCCCCCccccccccccccccccccccCCCC
Q 001348 747 -IPQDIGCLSLLRSLDLRKNNFE-YLPASMKHLSKLKSLDLSCCNMLQSLPELPLQLKFLQAKDCKQLQSLPEIP 819 (1094)
Q Consensus 747 -lp~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~~~c~~l~~~~~~p 819 (1094)
+|..+..+++|+.|+|++|++. .+|..+..+++|++|+|++|.+.+.+|..+..+..|...++..+...+.+|
T Consensus 490 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 564 (968)
T PLN00113 490 AVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP 564 (968)
T ss_pred ccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCC
Confidence 3444444555555555555554 444445555555555555555555555444433333333333333333333
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=2.7e-30 Score=284.67 Aligned_cols=341 Identities=24% Similarity=0.333 Sum_probs=243.4
Q ss_pred ceEEEEeCCCCCCccccccccccCCccccCcccccEEEecCCCCCCCCCCC-CccccceeeccccccccccccCCCCCcC
Q 001348 459 LRFLKFYMPKLFGISDMVCKLHLPQGLQYLSDELRYLHWHGYPLKMLPSNF-TPENLIELNLLYSRIEQLWKGKKGCKSL 537 (1094)
Q Consensus 459 Lr~L~l~~n~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~n~i~~l~~~~~~l~~L 537 (1094)
.|=.++++|.++| ..+|.++..+. ++++|.+....+..+|... .+.+|++|.+++|++.++...+..++.|
T Consensus 9 VrGvDfsgNDFsg-------~~FP~~v~qMt-~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~L 80 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSG-------DRFPHDVEQMT-QMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRL 80 (1255)
T ss_pred eecccccCCcCCC-------CcCchhHHHhh-heeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhh
Confidence 3444555555533 24455554443 4555555555555555544 3555666666666665555555555555
Q ss_pred cc------------cCCC-CCCCCCeEEeccCCCCCcccCCccC---CccEEEeccCCCCcccccc-ccccccceeeccc
Q 001348 538 RC------------FPNN-IHFRSPISLNFSYCVNFKEFPQISG---NVRELYLRGTPIEYVPSSI-DCLAKLEYLDLGH 600 (1094)
Q Consensus 538 ~~------------~~~~-~~~~~l~~L~Ls~~~~l~~~p~~~~---~L~~L~L~~~~l~~lp~~i-~~L~~L~~L~L~~ 600 (1094)
+. +|.. ..+..|..||||++. +++.|..+. ++-+|+|++|+|.+||.++ .+|..|-+|||++
T Consensus 81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred HHHhhhccccccCCCCchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc
Confidence 41 1222 245566699999884 778886655 8889999999999998775 6889999999998
Q ss_pred ccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccCcccc--cccchhhccCCCcEEecCCCCCCCCC
Q 001348 601 CTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEGTAIT--ELPSSIEYLGGLTTLNLTGCSKLDNL 678 (1094)
Q Consensus 601 ~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~--~lp~~l~~l~~L~~L~L~~~~~~~~l 678 (1094)
|.+ ..+|+.+..|.+|++|.|++|.+...--..+-.|++|++|.+++++-+ .+|.++..+.+|..++++.|+ +..+
T Consensus 160 NrL-e~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~-Lp~v 237 (1255)
T KOG0444|consen 160 NRL-EMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN-LPIV 237 (1255)
T ss_pred chh-hhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-CCcc
Confidence 874 778888889999999999998765443344556777888888887655 788888888888888888754 5667
Q ss_pred CccccCCCcccEEecCCccCccCCccccCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeCCCCCCC--CCCccccCCCC
Q 001348 679 PENLGNLKSLKMLCANESAISQLPSSITNLNELQVVWCSGCRGLILPPSFSGLSYLTELDLSCCNLI--EIPQDIGCLSL 756 (1094)
Q Consensus 679 p~~l~~l~~L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~ 756 (1094)
|+.+-++.+|+.|+|++|.|+++....+...+|++|+++.|+...+|..+..++.|+.|.+.+|+++ .||+.+|.+.+
T Consensus 238 Pecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~ 317 (1255)
T KOG0444|consen 238 PECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQ 317 (1255)
T ss_pred hHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhh
Confidence 8888888888888888888888777777778888888888888888888888888888888888776 48888888888
Q ss_pred CCeeecCCCCCcccchhhcCCCCCCEEEccCCCCCCCCCccc---ccccccccccccc
Q 001348 757 LRSLDLRKNNFEYLPASMKHLSKLKSLDLSCCNMLQSLPELP---LQLKFLQAKDCKQ 811 (1094)
Q Consensus 757 L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~---~~L~~L~~~~c~~ 811 (1094)
|+.+..++|.+.-+|.++..|+.|+.|.|++|.+ -.+|+.+ +.|+.|++.+.++
T Consensus 318 Levf~aanN~LElVPEglcRC~kL~kL~L~~NrL-iTLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 318 LEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRL-ITLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred hHHHHhhccccccCchhhhhhHHHHHhcccccce-eechhhhhhcCCcceeeccCCcC
Confidence 8888888888888888888888888888887764 4566543 3444444444333
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=2.7e-29 Score=276.84 Aligned_cols=323 Identities=24% Similarity=0.333 Sum_probs=278.8
Q ss_pred ccccCCCCCceEEEEeCCCCCCccccccccccCCccccCcccccEEEecCCCCC--CCCCC-CCccccceeecccccccc
Q 001348 450 PQAFANMPNLRFLKFYMPKLFGISDMVCKLHLPQGLQYLSDELRYLHWHGYPLK--MLPSN-FTPENLIELNLLYSRIEQ 526 (1094)
Q Consensus 450 ~~~f~~l~~Lr~L~l~~n~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~--~lp~~-~~~~~L~~L~L~~n~i~~ 526 (1094)
|+.++.+.+|.+|.++.|++. .+-..+..+| .||.+.+..|+++ .+|.. |.+..|..|||++|++++
T Consensus 48 PeEL~~lqkLEHLs~~HN~L~---------~vhGELs~Lp-~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~E 117 (1255)
T KOG0444|consen 48 PEELSRLQKLEHLSMAHNQLI---------SVHGELSDLP-RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLRE 117 (1255)
T ss_pred hHHHHHHhhhhhhhhhhhhhH---------hhhhhhccch-hhHHHhhhccccccCCCCchhcccccceeeecchhhhhh
Confidence 677888888888888888774 3445566665 6899999999886 46654 679999999999999999
Q ss_pred ccccCCCCCcCcccCCCCCCCCCeEEeccCCCCCcccCCccC----CccEEEeccCCCCccccccccccccceeeccccc
Q 001348 527 LWKGKKGCKSLRCFPNNIHFRSPISLNFSYCVNFKEFPQISG----NVRELYLRGTPIEYVPSSIDCLAKLEYLDLGHCT 602 (1094)
Q Consensus 527 l~~~~~~l~~L~~~~~~~~~~~l~~L~Ls~~~~l~~~p~~~~----~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~ 602 (1094)
.+.++...+++- +|+||++ ++..+|.... .|-.|+|++|.+..+|+.+..|.+|++|.|++|.
T Consensus 118 vP~~LE~AKn~i------------VLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP 184 (1255)
T KOG0444|consen 118 VPTNLEYAKNSI------------VLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP 184 (1255)
T ss_pred cchhhhhhcCcE------------EEEcccC-ccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh
Confidence 888777666666 9999988 4777776544 5678999999999999999999999999999997
Q ss_pred ccccchhhhhcCCcccEEeccCCcc-cCccchhhcccCccceeeccCcccccccchhhccCCCcEEecCCCCCCCCCCcc
Q 001348 603 ILESISTSICKLKSLLKLCLDNCSK-LESFPEILEKMGCLEDIDLEGTAITELPSSIEYLGGLTTLNLTGCSKLDNLPEN 681 (1094)
Q Consensus 603 ~~~~lp~~i~~l~~L~~L~L~~~~~-~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~ 681 (1094)
+...--..+..|++|++|.+++... +..+|.++..|.+|..+|++.|++..+|..+-++++|+.|+|++|.+. .+...
T Consensus 185 L~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~it-eL~~~ 263 (1255)
T KOG0444|consen 185 LNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKIT-ELNMT 263 (1255)
T ss_pred hhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCcee-eeecc
Confidence 6543222233488999999998554 457999999999999999999999999999999999999999998654 45556
Q ss_pred ccCCCcccEEecCCccCccCCccccCCCCCcEEEccCCCC--CCCCCCCCCCCCCCEEeCCCCCCCCCCccccCCCCCCe
Q 001348 682 LGNLKSLKMLCANESAISQLPSSITNLNELQVVWCSGCRG--LILPPSFSGLSYLTELDLSCCNLIEIPQDIGCLSLLRS 759 (1094)
Q Consensus 682 l~~l~~L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~~--~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~ 759 (1094)
.+...+|+.|+++.|+++.+|+.+.+|++|+.|.+.+|+. ..+|+.++.+..|+.+..++|++.-+|..+..+..|+.
T Consensus 264 ~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~k 343 (1255)
T KOG0444|consen 264 EGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQK 343 (1255)
T ss_pred HHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHH
Confidence 6777899999999999999999999999999999999984 57899999999999999999999999999999999999
Q ss_pred eecCCCCCcccchhhcCCCCCCEEEccCCCCCCCCCc
Q 001348 760 LDLRKNNFEYLPASMKHLSKLKSLDLSCCNMLQSLPE 796 (1094)
Q Consensus 760 L~L~~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~ 796 (1094)
|.|+.|.+.++|+.|.-|+.|+.|+|..|+.+...|.
T Consensus 344 L~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 344 LKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred hcccccceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 9999999999999999999999999999999987764
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=1.6e-27 Score=262.32 Aligned_cols=340 Identities=23% Similarity=0.191 Sum_probs=164.5
Q ss_pred ecccccccccccCccccCCCCCceEEEEeCCCCCCccccccccccCCccccCcccccEEEecCCCCCCCCCCC--Ccccc
Q 001348 437 FLDLSKIRDINLNPQAFANMPNLRFLKFYMPKLFGISDMVCKLHLPQGLQYLSDELRYLHWHGYPLKMLPSNF--TPENL 514 (1094)
Q Consensus 437 ~ldls~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~--~~~~L 514 (1094)
.||+++++.-+++...|.++++|+.+++..|.++. +|.. ...+.+|+.|++.+|.+.++.+.- .+..|
T Consensus 82 ~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~---------IP~f-~~~sghl~~L~L~~N~I~sv~se~L~~l~al 151 (873)
T KOG4194|consen 82 TLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTR---------IPRF-GHESGHLEKLDLRHNLISSVTSEELSALPAL 151 (873)
T ss_pred eeeccccccccCcHHHHhcCCcceeeeeccchhhh---------cccc-cccccceeEEeeeccccccccHHHHHhHhhh
Confidence 35566555555566666666666666665555432 2221 222234555566655555554321 24455
Q ss_pred ceeeccccccccccccC-CCCCcCcccCCCCCCCCCeEEeccCCCCCccc---CCccCCccEEEeccCCCCccccc-ccc
Q 001348 515 IELNLLYSRIEQLWKGK-KGCKSLRCFPNNIHFRSPISLNFSYCVNFKEF---PQISGNVRELYLRGTPIEYVPSS-IDC 589 (1094)
Q Consensus 515 ~~L~L~~n~i~~l~~~~-~~l~~L~~~~~~~~~~~l~~L~Ls~~~~l~~~---p~~~~~L~~L~L~~~~l~~lp~~-i~~ 589 (1094)
+.|||+.|.|+.+.... ..-.+++ .|+|+++..-+-- .+.+.+|..|.|+.|.|+.+|.. |.+
T Consensus 152 rslDLSrN~is~i~~~sfp~~~ni~------------~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~ 219 (873)
T KOG4194|consen 152 RSLDLSRNLISEIPKPSFPAKVNIK------------KLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKR 219 (873)
T ss_pred hhhhhhhchhhcccCCCCCCCCCce------------EEeeccccccccccccccccchheeeecccCcccccCHHHhhh
Confidence 55555555555543221 1112233 5555544311100 01111445555555555555432 233
Q ss_pred ccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccCcccccccc-hhhccCCCcEEe
Q 001348 590 LAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEGTAITELPS-SIEYLGGLTTLN 668 (1094)
Q Consensus 590 L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~ 668 (1094)
|++|+.|+|..|.+...---.|.+|++|+.|.|..|.+..--...|..|.++++|+|+.|++..+.. ++-+|+.|+.|+
T Consensus 220 L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~ 299 (873)
T KOG4194|consen 220 LPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLD 299 (873)
T ss_pred cchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhc
Confidence 5555555555554432222334445555555555544443333444555555555555555554433 344555555555
Q ss_pred cCCCCCCCCCCccccCCCcccEEecCCccCccCC-ccccCCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeCCCCCCCC
Q 001348 669 LTGCSKLDNLPENLGNLKSLKMLCANESAISQLP-SSITNLNELQVVWCSGCRGLILPP-SFSGLSYLTELDLSCCNLIE 746 (1094)
Q Consensus 669 L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p-~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~Ls~n~l~~ 746 (1094)
|++|.+...-+......++|++|+|++|.|+.++ .+|..|..|+.|.|+.|....+.. .|.++++|++|||++|.++-
T Consensus 300 lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~ 379 (873)
T KOG4194|consen 300 LSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSW 379 (873)
T ss_pred cchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEE
Confidence 5555554444444555555555555555555542 334455555555555555433322 24455555555555555541
Q ss_pred ----CCccccCCCCCCeeecCCCCCcccch-hhcCCCCCCEEEccCCCCCCCCCccc
Q 001348 747 ----IPQDIGCLSLLRSLDLRKNNFEYLPA-SMKHLSKLKSLDLSCCNMLQSLPELP 798 (1094)
Q Consensus 747 ----lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~~~~l~~lp~~~ 798 (1094)
-...+..+++|+.|.|.||++..+|. .+.++++|+.|+|.+|.+-..-|..|
T Consensus 380 ~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAF 436 (873)
T KOG4194|consen 380 CIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAF 436 (873)
T ss_pred EEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccccc
Confidence 11224445556666666666655553 45555666666666555544444433
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=5.5e-27 Score=258.14 Aligned_cols=360 Identities=23% Similarity=0.210 Sum_probs=292.7
Q ss_pred eeeecccccccccccCccccCCCC--CceEEEEeCCCCCCccccccccccCCccccCcccccEEEecCCCCCCCCCCCC-
Q 001348 434 EGIFLDLSKIRDINLNPQAFANMP--NLRFLKFYMPKLFGISDMVCKLHLPQGLQYLSDELRYLHWHGYPLKMLPSNFT- 510 (1094)
Q Consensus 434 ~~i~ldls~~~~~~l~~~~f~~l~--~Lr~L~l~~n~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~- 510 (1094)
....+|+++.+.-.++...+.+.- .-+.|++++|.+..+ -+.++..+| +|+.+++..|.++.+|....
T Consensus 53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~i--------d~~~f~nl~-nLq~v~l~~N~Lt~IP~f~~~ 123 (873)
T KOG4194|consen 53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHI--------DFEFFYNLP-NLQEVNLNKNELTRIPRFGHE 123 (873)
T ss_pred CceeeecCccccccccccccCCcCccceeeeeccccccccC--------cHHHHhcCC-cceeeeeccchhhhccccccc
Confidence 445677777666555555555543 346699999998641 123444554 79999999999999998876
Q ss_pred ccccceeecccccccccc-ccCCCCCcCcccCCCCCCCCCeEEeccCCCCCcccCCc--cC--CccEEEeccCCCCcc-c
Q 001348 511 PENLIELNLLYSRIEQLW-KGKKGCKSLRCFPNNIHFRSPISLNFSYCVNFKEFPQI--SG--NVRELYLRGTPIEYV-P 584 (1094)
Q Consensus 511 ~~~L~~L~L~~n~i~~l~-~~~~~l~~L~~~~~~~~~~~l~~L~Ls~~~~l~~~p~~--~~--~L~~L~L~~~~l~~l-p 584 (1094)
..+|+.|+|.+|.|..+- +.++.++.|+ +||||.+. +..+|.. +. ++++|+|++|.|+.+ .
T Consensus 124 sghl~~L~L~~N~I~sv~se~L~~l~alr------------slDLSrN~-is~i~~~sfp~~~ni~~L~La~N~It~l~~ 190 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLISSVTSEELSALPALR------------SLDLSRNL-ISEIPKPSFPAKVNIKKLNLASNRITTLET 190 (873)
T ss_pred ccceeEEeeeccccccccHHHHHhHhhhh------------hhhhhhch-hhcccCCCCCCCCCceEEeecccccccccc
Confidence 456999999999999873 4466677777 99999874 4444432 22 899999999999988 4
Q ss_pred cccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccCcccccccch-hhccCC
Q 001348 585 SSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEGTAITELPSS-IEYLGG 663 (1094)
Q Consensus 585 ~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~-l~~l~~ 663 (1094)
..|.+|.+|..|.|+.|.+....+..|.+|++|+.|+|..|.+-..---.|.++++|+.|.|..|.|..+.++ |-.+.+
T Consensus 191 ~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~k 270 (873)
T KOG4194|consen 191 GHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEK 270 (873)
T ss_pred ccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecc
Confidence 5688899999999999998877777888899999999999876544356789999999999999999988775 678999
Q ss_pred CcEEecCCCCCCCCCCccccCCCcccEEecCCccCccC-CccccCCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeCCC
Q 001348 664 LTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQL-PSSITNLNELQVVWCSGCRGLILPP-SFSGLSYLTELDLSC 741 (1094)
Q Consensus 664 L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~-p~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~Ls~ 741 (1094)
+++|+|..|+....-..++.+|++|+.|++++|.|..+ +++....++|+.|+|++|....+++ +|..+..|++|+|++
T Consensus 271 me~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~ 350 (873)
T KOG4194|consen 271 MEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSH 350 (873)
T ss_pred cceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccc
Confidence 99999999998887788999999999999999999987 7788899999999999999988876 588899999999999
Q ss_pred CCCCCCCcc-ccCCCCCCeeecCCCCCcc-c---chhhcCCCCCCEEEccCCCCCCCCC-cccccccccccccccccccc
Q 001348 742 CNLIEIPQD-IGCLSLLRSLDLRKNNFEY-L---PASMKHLSKLKSLDLSCCNMLQSLP-ELPLQLKFLQAKDCKQLQSL 815 (1094)
Q Consensus 742 n~l~~lp~~-l~~l~~L~~L~L~~n~l~~-l---p~~l~~l~~L~~L~L~~~~~l~~lp-~~~~~L~~L~~~~c~~l~~~ 815 (1094)
|.+..+.+. +.++++|+.|+|++|.++. + ...+..|++|+.|+|.+|++ +++| ..+..|+.|..+|+.++...
T Consensus 351 Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNql-k~I~krAfsgl~~LE~LdL~~Naia 429 (873)
T KOG4194|consen 351 NSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQL-KSIPKRAFSGLEALEHLDLGDNAIA 429 (873)
T ss_pred cchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCcee-eecchhhhccCcccceecCCCCcce
Confidence 999987554 7789999999999999882 2 23577899999999999974 5666 46777777777777766554
Q ss_pred C
Q 001348 816 P 816 (1094)
Q Consensus 816 ~ 816 (1094)
+
T Consensus 430 S 430 (873)
T KOG4194|consen 430 S 430 (873)
T ss_pred e
Confidence 4
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.90 E-value=8e-26 Score=239.23 Aligned_cols=328 Identities=23% Similarity=0.279 Sum_probs=261.1
Q ss_pred cccccccccccCccccCCCCCceEEEEeCCCCCCccccccccccCCccccCcccccEEEecCCCCCCCCCCCCcccccee
Q 001348 438 LDLSKIRDINLNPQAFANMPNLRFLKFYMPKLFGISDMVCKLHLPQGLQYLSDELRYLHWHGYPLKMLPSNFTPENLIEL 517 (1094)
Q Consensus 438 ldls~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L 517 (1094)
+++..++...+.++... |+.|+.|+...|.+. .+|+.+..+. +|..|++..|.+..+|..-.+..|++|
T Consensus 165 l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~---------tlP~~lg~l~-~L~~LyL~~Nki~~lPef~gcs~L~El 233 (565)
T KOG0472|consen 165 LDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE---------TLPPELGGLE-SLELLYLRRNKIRFLPEFPGCSLLKEL 233 (565)
T ss_pred hhccccchhhCCHHHHH-HHHHHhcccchhhhh---------cCChhhcchh-hhHHHHhhhcccccCCCCCccHHHHHH
Confidence 45555666666666666 888998888877663 6777777774 688889999999999966678889999
Q ss_pred eccccccccccccC-CCCCcCcccCCCCCCCCCeEEeccCCCCCcccCCccC---CccEEEeccCCCCcccccccccccc
Q 001348 518 NLLYSRIEQLWKGK-KGCKSLRCFPNNIHFRSPISLNFSYCVNFKEFPQISG---NVRELYLRGTPIEYVPSSIDCLAKL 593 (1094)
Q Consensus 518 ~L~~n~i~~l~~~~-~~l~~L~~~~~~~~~~~l~~L~Ls~~~~l~~~p~~~~---~L~~L~L~~~~l~~lp~~i~~L~~L 593 (1094)
++..|.|+-++... +.+..+. +|||..++ +++.|+... +|.+||+++|.|+.+|.++|++ +|
T Consensus 234 h~g~N~i~~lpae~~~~L~~l~------------vLDLRdNk-lke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL 299 (565)
T KOG0472|consen 234 HVGENQIEMLPAEHLKHLNSLL------------VLDLRDNK-LKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HL 299 (565)
T ss_pred HhcccHHHhhHHHHhcccccce------------eeeccccc-cccCchHHHHhhhhhhhcccCCccccCCcccccc-ee
Confidence 99999998886653 4677777 99999884 888998765 7889999999999999999999 99
Q ss_pred ceeeccccccccc-------------------------------------ch----hhhhcCCcccEEeccCCcccCccc
Q 001348 594 EYLDLGHCTILES-------------------------------------IS----TSICKLKSLLKLCLDNCSKLESFP 632 (1094)
Q Consensus 594 ~~L~L~~~~~~~~-------------------------------------lp----~~i~~l~~L~~L~L~~~~~~~~~p 632 (1094)
+.|-+.||.+... .| .....+.+.+.|++++ .....+|
T Consensus 300 ~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VP 378 (565)
T KOG0472|consen 300 KFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD-KQLTLVP 378 (565)
T ss_pred eehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc-cccccCC
Confidence 9999999854210 00 1122345666677766 3344455
Q ss_pred hhhcccCc---cceeeccCcccccccchhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccCCccccCCC
Q 001348 633 EILEKMGC---LEDIDLEGTAITELPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQLPSSITNLN 709 (1094)
Q Consensus 633 ~~l~~l~~---L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p~~l~~l~ 709 (1094)
+....... ....+++.|++.++|..+..+..+.+.-+..++..+..|..+..+++|..|++++|.+.++|..++.+.
T Consensus 379 dEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv 458 (565)
T KOG0472|consen 379 DEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLV 458 (565)
T ss_pred HHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhh
Confidence 54333222 667788888888888888888887777777777888888889999999999999999999999999999
Q ss_pred CCcEEEccCCCCCCCCCCCCCCCCCCEEeCCCCCCCCCCcc-ccCCCCCCeeecCCCCCcccchhhcCCCCCCEEEccCC
Q 001348 710 ELQVVWCSGCRGLILPPSFSGLSYLTELDLSCCNLIEIPQD-IGCLSLLRSLDLRKNNFEYLPASMKHLSKLKSLDLSCC 788 (1094)
Q Consensus 710 ~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~~ 788 (1094)
.|+.|+++.|+...+|..+..+..|+.+-.++|++..++.. +..+.+|..|+|.+|.+..+|+.++++.+|++|.|++|
T Consensus 459 ~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gN 538 (565)
T KOG0472|consen 459 RLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGN 538 (565)
T ss_pred hhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCC
Confidence 99999999998888888777777788888888999988776 88999999999999999999999999999999999999
Q ss_pred CCC
Q 001348 789 NML 791 (1094)
Q Consensus 789 ~~l 791 (1094)
++-
T Consensus 539 pfr 541 (565)
T KOG0472|consen 539 PFR 541 (565)
T ss_pred ccC
Confidence 876
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.89 E-value=9.2e-26 Score=238.79 Aligned_cols=242 Identities=24% Similarity=0.329 Sum_probs=172.6
Q ss_pred cccCCCCCceEEEEeCCCCCCccccccccccCCccccCcccccEEEecCCCCCCCCCCC-Cccccceeeccccccccccc
Q 001348 451 QAFANMPNLRFLKFYMPKLFGISDMVCKLHLPQGLQYLSDELRYLHWHGYPLKMLPSNF-TPENLIELNLLYSRIEQLWK 529 (1094)
Q Consensus 451 ~~f~~l~~Lr~L~l~~n~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~n~i~~l~~ 529 (1094)
....++..|.+|+++.|.++ .+|..+..+- .+..|+.+.|.+..+|... .+.+|+.|+.++|.+..++.
T Consensus 62 ~dl~nL~~l~vl~~~~n~l~---------~lp~aig~l~-~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~ 131 (565)
T KOG0472|consen 62 EDLKNLACLTVLNVHDNKLS---------QLPAAIGELE-ALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPD 131 (565)
T ss_pred HhhhcccceeEEEeccchhh---------hCCHHHHHHH-HHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCc
Confidence 44566677777777776653 4555555543 4666777777777776554 46677777777777777766
Q ss_pred cCCCCCcCcccCCCCCCCCCeEEeccCCCCCcccCCccC---CccEEEeccCCCCccccccccccccceeeccccccccc
Q 001348 530 GKKGCKSLRCFPNNIHFRSPISLNFSYCVNFKEFPQISG---NVRELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILES 606 (1094)
Q Consensus 530 ~~~~l~~L~~~~~~~~~~~l~~L~Ls~~~~l~~~p~~~~---~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~ 606 (1094)
++..+..|. .++..++ ++..+|..+. .|..|++.+|.+..+|+..-+++.|+.||...|- ++.
T Consensus 132 ~i~~~~~l~------------dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~-L~t 197 (565)
T KOG0472|consen 132 SIGRLLDLE------------DLDATNN-QISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNL-LET 197 (565)
T ss_pred hHHHHhhhh------------hhhcccc-ccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhh-hhc
Confidence 666666655 5555444 3445554444 5666777777777777766667777777776654 466
Q ss_pred chhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccCcccccccchhh-ccCCCcEEecCCCCCCCCCCccccCC
Q 001348 607 ISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEGTAITELPSSIE-YLGGLTTLNLTGCSKLDNLPENLGNL 685 (1094)
Q Consensus 607 lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~l~-~l~~L~~L~L~~~~~~~~lp~~l~~l 685 (1094)
+|+.++.|.+|..|+|..|. +..+| .|.++..|..|+++.|.|+.+|..++ ++.+|.+|+|.+| .++..|..+.-+
T Consensus 198 lP~~lg~l~~L~~LyL~~Nk-i~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clL 274 (565)
T KOG0472|consen 198 LPPELGGLESLELLYLRRNK-IRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLL 274 (565)
T ss_pred CChhhcchhhhHHHHhhhcc-cccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCchHHHHh
Confidence 77777777777777777754 34455 56677777777777777777777665 8889999999986 467789999999
Q ss_pred CcccEEecCCccCccCCccccCCCCCcEEEccCCC
Q 001348 686 KSLKMLCANESAISQLPSSITNLNELQVVWCSGCR 720 (1094)
Q Consensus 686 ~~L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~ 720 (1094)
++|..|++++|.|+.+|.+++++ +|+.|-+.||.
T Consensus 275 rsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 275 RSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred hhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence 99999999999999999999999 88888888775
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=1.6e-21 Score=254.43 Aligned_cols=312 Identities=26% Similarity=0.404 Sum_probs=255.6
Q ss_pred ccccCCC-CCceEEEEeCCCCCCccccccccccCCccccCcccccEEEecCCCCCCCCCCC-Cccccceeeccccc-ccc
Q 001348 450 PQAFANM-PNLRFLKFYMPKLFGISDMVCKLHLPQGLQYLSDELRYLHWHGYPLKMLPSNF-TPENLIELNLLYSR-IEQ 526 (1094)
Q Consensus 450 ~~~f~~l-~~Lr~L~l~~n~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~n~-i~~ 526 (1094)
+..|..+ .+||.|.+.++.+. .+|..+. +.+|+.|++.++.++.+|..+ .+.+|+.|+|+++. +..
T Consensus 581 p~~~~~lp~~Lr~L~~~~~~l~---------~lP~~f~--~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ 649 (1153)
T PLN03210 581 PEGFDYLPPKLRLLRWDKYPLR---------CMPSNFR--PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKE 649 (1153)
T ss_pred CcchhhcCcccEEEEecCCCCC---------CCCCcCC--ccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCc
Confidence 3456665 46999999988764 4555542 468999999999999998766 58999999999875 445
Q ss_pred ccccCCCCCcCcccCCCCCCCCCeEEeccCCCCCcccCCccC---CccEEEecc-CCCCccccccccccccceeeccccc
Q 001348 527 LWKGKKGCKSLRCFPNNIHFRSPISLNFSYCVNFKEFPQISG---NVRELYLRG-TPIEYVPSSIDCLAKLEYLDLGHCT 602 (1094)
Q Consensus 527 l~~~~~~l~~L~~~~~~~~~~~l~~L~Ls~~~~l~~~p~~~~---~L~~L~L~~-~~l~~lp~~i~~L~~L~~L~L~~~~ 602 (1094)
++ .+..+++|+ .|++++|..+..+|..++ +|+.|++++ +.+..+|..+ ++++|++|+|++|.
T Consensus 650 ip-~ls~l~~Le------------~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 650 IP-DLSMATNLE------------TLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCS 715 (1153)
T ss_pred CC-ccccCCccc------------EEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCC
Confidence 43 355566666 999999999999997765 899999999 5788999877 79999999999999
Q ss_pred ccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccCcccccccc--------hhhccCCCcEEecCCCCC
Q 001348 603 ILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEGTAITELPS--------SIEYLGGLTTLNLTGCSK 674 (1094)
Q Consensus 603 ~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~--------~l~~l~~L~~L~L~~~~~ 674 (1094)
.++.+|.. ..+|+.|++++|. +..+|..+ .+++|++|++.++....++. .....++|+.|+|++|..
T Consensus 716 ~L~~~p~~---~~nL~~L~L~~n~-i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~ 790 (1153)
T PLN03210 716 RLKSFPDI---STNISWLDLDETA-IEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPS 790 (1153)
T ss_pred Cccccccc---cCCcCeeecCCCc-cccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCC
Confidence 88888763 5789999999987 45677765 58899999988754333322 223457899999999999
Q ss_pred CCCCCccccCCCcccEEecCCc-cCccCCccccCCCCCcEEEccCCCCC-CCCCCCCCCCCCCEEeCCCCCCCCCCcccc
Q 001348 675 LDNLPENLGNLKSLKMLCANES-AISQLPSSITNLNELQVVWCSGCRGL-ILPPSFSGLSYLTELDLSCCNLIEIPQDIG 752 (1094)
Q Consensus 675 ~~~lp~~l~~l~~L~~L~l~~~-~i~~~p~~l~~l~~L~~L~l~~~~~~-~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~ 752 (1094)
...+|..++++++|+.|++++| .+..+|..+ ++++|+.|++++|... .+|. ...+|+.|+|++|.++++|.++.
T Consensus 791 l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls~n~i~~iP~si~ 866 (1153)
T PLN03210 791 LVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD---ISTNISDLNLSRTGIEEVPWWIE 866 (1153)
T ss_pred ccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc---cccccCEeECCCCCCccChHHHh
Confidence 9999999999999999999987 577888776 7999999999998743 3443 24689999999999999999999
Q ss_pred CCCCCCeeecCCC-CCcccchhhcCCCCCCEEEccCCCCCCCCC
Q 001348 753 CLSLLRSLDLRKN-NFEYLPASMKHLSKLKSLDLSCCNMLQSLP 795 (1094)
Q Consensus 753 ~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp 795 (1094)
.+++|+.|+|++| ++..+|..+..+++|+.|++++|..+..++
T Consensus 867 ~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 867 KFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred cCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 9999999999995 788999889999999999999999876554
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.86 E-value=1.4e-23 Score=243.94 Aligned_cols=342 Identities=25% Similarity=0.305 Sum_probs=193.7
Q ss_pred eeecccccccccccCccccCCCCCceEEEEeCCCCCCccccccccccCCccccCcccccEEEecCCCCCCCCCCC-Cccc
Q 001348 435 GIFLDLSKIRDINLNPQAFANMPNLRFLKFYMPKLFGISDMVCKLHLPQGLQYLSDELRYLHWHGYPLKMLPSNF-TPEN 513 (1094)
Q Consensus 435 ~i~ldls~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~~~~ 513 (1094)
-..+|++.+....+ |..+..+.+|+.|+++.|.+. ..|...... ++|++|.+.+|.+..+|..+ .+.+
T Consensus 47 L~~l~lsnn~~~~f-p~~it~l~~L~~ln~s~n~i~---------~vp~s~~~~-~~l~~lnL~~n~l~~lP~~~~~lkn 115 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSF-PIQITLLSHLRQLNLSRNYIR---------SVPSSCSNM-RNLQYLNLKNNRLQSLPASISELKN 115 (1081)
T ss_pred eEEeeccccccccC-CchhhhHHHHhhcccchhhHh---------hCchhhhhh-hcchhheeccchhhcCchhHHhhhc
Confidence 34455554433222 233445555555555555442 233333333 47999999999999999777 4889
Q ss_pred cceeeccccccccccccCCCCCcC------------------------c------ccCCCCC------------------
Q 001348 514 LIELNLLYSRIEQLWKGKKGCKSL------------------------R------CFPNNIH------------------ 545 (1094)
Q Consensus 514 L~~L~L~~n~i~~l~~~~~~l~~L------------------------~------~~~~~~~------------------ 545 (1094)
|+.|++++|++...+.-+..+..+ + .++-.+.
T Consensus 116 l~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dl 195 (1081)
T KOG0618|consen 116 LQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDL 195 (1081)
T ss_pred ccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhh
Confidence 999999999877553221111100 0 0000000
Q ss_pred ----------------------CCCCeEEeccCCCCCcccCCccC-CccEEEeccCCCCccccccccccccceeeccccc
Q 001348 546 ----------------------FRSPISLNFSYCVNFKEFPQISG-NVRELYLRGTPIEYVPSSIDCLAKLEYLDLGHCT 602 (1094)
Q Consensus 546 ----------------------~~~l~~L~Ls~~~~l~~~p~~~~-~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~ 602 (1094)
..++..|+.++|...+..+.... +|++++++++.+..+|++++.+.+|+.|+..+|.
T Consensus 196 s~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~ 275 (1081)
T KOG0618|consen 196 SNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNR 275 (1081)
T ss_pred hhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchh
Confidence 01112222222222222222222 6777777777777777777777777777777776
Q ss_pred ccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccCcccccccchhhc----------------------
Q 001348 603 ILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEGTAITELPSSIEY---------------------- 660 (1094)
Q Consensus 603 ~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~l~~---------------------- 660 (1094)
+ ..+|..+....+|+.|++..|. +..+|...+.+++|++|+|..|+|..+|..+-.
T Consensus 276 l-~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~ 353 (1081)
T KOG0618|consen 276 L-VALPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSY 353 (1081)
T ss_pred H-HhhHHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccc
Confidence 5 5566667777777777777754 456667777777777777777777777653211
Q ss_pred ----cCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccCCcc-ccCCCCCcEEEccCCCCCCCCCCCCCCCCCC
Q 001348 661 ----LGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQLPSS-ITNLNELQVVWCSGCRGLILPPSFSGLSYLT 735 (1094)
Q Consensus 661 ----l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p~~-l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~ 735 (1094)
+..|+.|.+.+|.+....-..+.+.++|+.|+|++|.+..+|++ +.+++.|+.|+++||+...+|..+.+++.|+
T Consensus 354 ~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~ 433 (1081)
T KOG0618|consen 354 EENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLH 433 (1081)
T ss_pred cchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhH
Confidence 12244445555555554444555555666666666666655543 4555556666666666655665555566666
Q ss_pred EEeCCCCCCCCCCccccCCCCCCeeecCCCCCc--ccchhhcCCCCCCEEEccCCCCC
Q 001348 736 ELDLSCCNLIEIPQDIGCLSLLRSLDLRKNNFE--YLPASMKHLSKLKSLDLSCCNML 791 (1094)
Q Consensus 736 ~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~~~~l 791 (1094)
+|...+|++..+| .+..++.|+.+||+.|+++ .+|..... ++|++|||++|..+
T Consensus 434 tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 434 TLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRL 489 (1081)
T ss_pred HHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCccc
Confidence 6666666665555 4555566666666666555 23322211 55666666666543
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=2.7e-20 Score=225.11 Aligned_cols=220 Identities=24% Similarity=0.250 Sum_probs=137.4
Q ss_pred EEeccCCCCCcccCCccCCccEEEeccCCCCccccccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCc
Q 001348 551 SLNFSYCVNFKEFPQISGNVRELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLES 630 (1094)
Q Consensus 551 ~L~Ls~~~~l~~~p~~~~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~ 630 (1094)
+|++++| .++.+|....+|+.|+|++|.+..+|... .+|+.|++++|.+. .+|.. +++|+.|++++|.+.+
T Consensus 246 ~LdLs~N-~LtsLP~lp~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~- 316 (788)
T PRK15387 246 TLEVSGN-QLTSLPVLPPGLLELSIFSNPLTHLPALP---SGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS- 316 (788)
T ss_pred EEEecCC-ccCcccCcccccceeeccCCchhhhhhch---hhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-
Confidence 4444443 23334433345555555555555554422 34555555555443 23331 3455566665554332
Q ss_pred cchhhcccCccceeeccCcccccccchhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccCCccccCCCC
Q 001348 631 FPEILEKMGCLEDIDLEGTAITELPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQLPSSITNLNE 710 (1094)
Q Consensus 631 ~p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p~~l~~l~~ 710 (1094)
+|... .+|+.|++++|.++.+|.. ..+|+.|+|++|++. .+|.. ..+|+.|++++|.++.+|.. ..+
T Consensus 317 Lp~lp---~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~ 383 (788)
T PRK15387 317 LPALP---SELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTSLPAL---PSG 383 (788)
T ss_pred CCCCc---ccccccccccCcccccccc---ccccceEecCCCccC-CCCCC---CcccceehhhccccccCccc---ccc
Confidence 33321 2355566666666666541 235666666665543 34432 24566677777777776653 246
Q ss_pred CcEEEccCCCCCCCCCCCCCCCCCCEEeCCCCCCCCCCccccCCCCCCeeecCCCCCcccchhhcCCCCCCEEEccCCCC
Q 001348 711 LQVVWCSGCRGLILPPSFSGLSYLTELDLSCCNLIEIPQDIGCLSLLRSLDLRKNNFEYLPASMKHLSKLKSLDLSCCNM 790 (1094)
Q Consensus 711 L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~~~~ 790 (1094)
|+.|++++|....+|.. .++|+.|++++|.++.+|.. +.+|+.|++++|+++.+|..+..+++|+.|+|++|++
T Consensus 384 L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 384 LKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred cceEEecCCcccCCCCc---ccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCC
Confidence 77888888877766653 35789999999999988864 3578889999999999999999999999999999998
Q ss_pred CCCCCccc
Q 001348 791 LQSLPELP 798 (1094)
Q Consensus 791 l~~lp~~~ 798 (1094)
.+..|..+
T Consensus 458 s~~~~~~L 465 (788)
T PRK15387 458 SERTLQAL 465 (788)
T ss_pred CchHHHHH
Confidence 88776544
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.81 E-value=2.3e-19 Score=217.00 Aligned_cols=243 Identities=21% Similarity=0.232 Sum_probs=176.6
Q ss_pred ccccEEEecCCCCCCCCCCCCccccceeeccccccccccccCCCCCcCcccCCCCCCCCCeEEeccCCCCCcccCCccCC
Q 001348 490 DELRYLHWHGYPLKMLPSNFTPENLIELNLLYSRIEQLWKGKKGCKSLRCFPNNIHFRSPISLNFSYCVNFKEFPQISGN 569 (1094)
Q Consensus 490 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~~~~~~~~~~l~~L~Ls~~~~l~~~p~~~~~ 569 (1094)
.+|+.|++.+|.++.+|.. +++|++|+|++|+|+.++.. .++|+ .|++++|. +..+|....+
T Consensus 222 ~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l---p~sL~------------~L~Ls~N~-L~~Lp~lp~~ 283 (788)
T PRK15387 222 AHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL---PPGLL------------ELSIFSNP-LTHLPALPSG 283 (788)
T ss_pred cCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc---ccccc------------eeeccCCc-hhhhhhchhh
Confidence 3566677777777766653 46677777777777665432 23344 66676663 5666666667
Q ss_pred ccEEEeccCCCCccccccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccCc
Q 001348 570 VRELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEGT 649 (1094)
Q Consensus 570 L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~ 649 (1094)
|+.|+|++|.++.+|.. +++|+.|+|++|.+.+ +|.. ..+|+.|++++|.+. .+|.. ..+|+.|+|++|
T Consensus 284 L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP~l---p~~Lq~LdLS~N 352 (788)
T PRK15387 284 LCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLPTL---PSGLQELSVSDN 352 (788)
T ss_pred cCEEECcCCcccccccc---ccccceeECCCCcccc-CCCC---cccccccccccCccc-ccccc---ccccceEecCCC
Confidence 88888888888888763 4678888888887654 4542 345777888887654 45542 247888999999
Q ss_pred ccccccchhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccCCccccCCCCCcEEEccCCCCCCCCCCCC
Q 001348 650 AITELPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQLPSSITNLNELQVVWCSGCRGLILPPSFS 729 (1094)
Q Consensus 650 ~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~ 729 (1094)
+|+.+|.. ..+|+.|++++|.+. .+|.. ..+|+.|++++|.++.+|.. .++|+.|++++|....+|..
T Consensus 353 ~Ls~LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~LssIP~l-- 420 (788)
T PRK15387 353 QLASLPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSLPML-- 420 (788)
T ss_pred ccCCCCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccCCCCc---ccCCCEEEccCCcCCCCCcc--
Confidence 88888863 356778888887654 46654 35788999999999888764 36789999999998888763
Q ss_pred CCCCCCEEeCCCCCCCCCCccccCCCCCCeeecCCCCCc-ccchhh
Q 001348 730 GLSYLTELDLSCCNLIEIPQDIGCLSLLRSLDLRKNNFE-YLPASM 774 (1094)
Q Consensus 730 ~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~l 774 (1094)
..+|+.|++++|+++.+|..++.+++|+.|+|++|.|+ ..|..+
T Consensus 421 -~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 421 -PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred -hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 35788999999999999999999999999999999998 344444
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.80 E-value=3.9e-21 Score=223.72 Aligned_cols=345 Identities=27% Similarity=0.339 Sum_probs=213.7
Q ss_pred eecccccccccccCccccCCCCCceEEEEeCCCCCCccccccccccCCccccCcccccEEEecCCCCCCCCCCC-Ccccc
Q 001348 436 IFLDLSKIRDINLNPQAFANMPNLRFLKFYMPKLFGISDMVCKLHLPQGLQYLSDELRYLHWHGYPLKMLPSNF-TPENL 514 (1094)
Q Consensus 436 i~ldls~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~~~~L 514 (1094)
+.++++.+-.+..+.+...+.-+|+.|++++|.+. .+|..+..++ +|+.|+++.|-+.++|... .+.+|
T Consensus 24 ~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~---------~fp~~it~l~-~L~~ln~s~n~i~~vp~s~~~~~~l 93 (1081)
T KOG0618|consen 24 QILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS---------SFPIQITLLS-HLRQLNLSRNYIRSVPSSCSNMRNL 93 (1081)
T ss_pred HhhhccccccccCchHHhhheeeeEEeeccccccc---------cCCchhhhHH-HHhhcccchhhHhhCchhhhhhhcc
Confidence 34455555445544555666677999999999875 3455555554 6999999999999999654 58899
Q ss_pred ceeeccccccccccccCCCCCcCcccCCCCCCCCCeEEeccCCCCCcccCCccC----------------------CccE
Q 001348 515 IELNLLYSRIEQLWKGKKGCKSLRCFPNNIHFRSPISLNFSYCVNFKEFPQISG----------------------NVRE 572 (1094)
Q Consensus 515 ~~L~L~~n~i~~l~~~~~~l~~L~~~~~~~~~~~l~~L~Ls~~~~l~~~p~~~~----------------------~L~~ 572 (1094)
++|+|.+|.+..++.++..+++|. .|+++++. +..+|.... .++.
T Consensus 94 ~~lnL~~n~l~~lP~~~~~lknl~------------~LdlS~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~ 160 (1081)
T KOG0618|consen 94 QYLNLKNNRLQSLPASISELKNLQ------------YLDLSFNH-FGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKK 160 (1081)
T ss_pred hhheeccchhhcCchhHHhhhccc------------ccccchhc-cCCCchhHHhhhHHHHHhhhcchhhhhhccccchh
Confidence 999999999999998888888888 88888875 344442221 2445
Q ss_pred EEeccCCCC-ccccccccccccceeecccccccccchhhhhc--------------------CCcccEEeccCCcccCcc
Q 001348 573 LYLRGTPIE-YVPSSIDCLAKLEYLDLGHCTILESISTSICK--------------------LKSLLKLCLDNCSKLESF 631 (1094)
Q Consensus 573 L~L~~~~l~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~--------------------l~~L~~L~L~~~~~~~~~ 631 (1094)
++|..+.+. .++..+.++.+ .|+|++|.+.. +. +.+ .++|+.|+.++|.+....
T Consensus 161 ~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~-~d--ls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~ 235 (1081)
T KOG0618|consen 161 LDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV-LD--LSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLD 235 (1081)
T ss_pred hhhhhhhcccchhcchhhhhe--eeecccchhhh-hh--hhhccchhhhhhhhcccceEEecCcchheeeeccCcceeec
Confidence 555554444 44555666655 57777776641 11 111 134455555555544322
Q ss_pred chhhcccCccceeeccCcccccccchhhccCCCcEEecCCCCC----------------------CCCCCccccCCCccc
Q 001348 632 PEILEKMGCLEDIDLEGTAITELPSSIEYLGGLTTLNLTGCSK----------------------LDNLPENLGNLKSLK 689 (1094)
Q Consensus 632 p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~----------------------~~~lp~~l~~l~~L~ 689 (1094)
+.. --.+|++++++.|+++.+|++++.+.+|+.|+...|.+ +..+|..+..+++|+
T Consensus 236 ~~p--~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~ 313 (1081)
T KOG0618|consen 236 VHP--VPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLR 313 (1081)
T ss_pred ccc--ccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceee
Confidence 211 12357777777777777777777777777777666543 233455555666666
Q ss_pred EEecCCccCccCCcc--------------------------------------------------ccCCCCCcEEEccCC
Q 001348 690 MLCANESAISQLPSS--------------------------------------------------ITNLNELQVVWCSGC 719 (1094)
Q Consensus 690 ~L~l~~~~i~~~p~~--------------------------------------------------l~~l~~L~~L~l~~~ 719 (1094)
+|++..|.+..+|+. +.+..+|++|+|++|
T Consensus 314 tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN 393 (1081)
T KOG0618|consen 314 TLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN 393 (1081)
T ss_pred eeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc
Confidence 666666666554421 223345555555555
Q ss_pred CCCCCCCC-CCCCCCCCEEeCCCCCCCCCCccccCCCCCCeeecCCCCCcccchhhcCCCCCCEEEccCCCCCC-CCCc-
Q 001348 720 RGLILPPS-FSGLSYLTELDLSCCNLIEIPQDIGCLSLLRSLDLRKNNFEYLPASMKHLSKLKSLDLSCCNMLQ-SLPE- 796 (1094)
Q Consensus 720 ~~~~lp~~-l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~~~~l~-~lp~- 796 (1094)
+...+|++ +.+++.|++|+||+|.++.+|..+..++.|+.|...+|++..+| .+..++.|+.+||+.|.+.. .+|.
T Consensus 394 rL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~ 472 (1081)
T KOG0618|consen 394 RLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEA 472 (1081)
T ss_pred ccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhh
Confidence 55555543 44555555555555555555555555555555555555566666 56667778888888777643 3343
Q ss_pred cc-ccccccccccccc
Q 001348 797 LP-LQLKFLQAKDCKQ 811 (1094)
Q Consensus 797 ~~-~~L~~L~~~~c~~ 811 (1094)
.| ++|++|++.+-+.
T Consensus 473 ~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 473 LPSPNLKYLDLSGNTR 488 (1081)
T ss_pred CCCcccceeeccCCcc
Confidence 34 5777777766554
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=8.7e-19 Score=213.77 Aligned_cols=183 Identities=26% Similarity=0.371 Sum_probs=108.1
Q ss_pred CccEEEeccCCCCccccccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccC
Q 001348 569 NVRELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEG 648 (1094)
Q Consensus 569 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~ 648 (1094)
+|+.|+|++|.+..+|..+. .+|++|++++|++. .+|..+. .+|++|++++|.+. .+|..+. ++|+.|++++
T Consensus 242 ~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~ 313 (754)
T PRK15370 242 TIQEMELSINRITELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQS 313 (754)
T ss_pred cccEEECcCCccCcCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcC
Confidence 45566666666666655443 35666666655543 3444332 34555555554332 2332221 2344444444
Q ss_pred cccccccchhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccCCccccCCCCCcEEEccCCCCCCCCCCC
Q 001348 649 TAITELPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQLPSSITNLNELQVVWCSGCRGLILPPSF 728 (1094)
Q Consensus 649 ~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l 728 (1094)
|.++.+|. .+. ++|+.|++++|.++.+|..+. ++|+.|++++|....+|..+
T Consensus 314 N~Lt~LP~------------------------~l~--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~l 365 (754)
T PRK15370 314 NSLTALPE------------------------TLP--PGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETL 365 (754)
T ss_pred CccccCCc------------------------ccc--ccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChhh
Confidence 44444443 221 355555666666665555443 56666777766665555544
Q ss_pred CCCCCCCEEeCCCCCCCCCCccccCCCCCCeeecCCCCCcccchhh----cCCCCCCEEEccCCCCC
Q 001348 729 SGLSYLTELDLSCCNLIEIPQDIGCLSLLRSLDLRKNNFEYLPASM----KHLSKLKSLDLSCCNML 791 (1094)
Q Consensus 729 ~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l----~~l~~L~~L~L~~~~~l 791 (1094)
.++|+.|+|++|+++.+|..+. .+|+.|++++|+++.+|..+ ..++++..|+|.+|++.
T Consensus 366 --p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 366 --PPTITTLDVSRNALTNLPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred --cCCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 2578888888888888887654 36888888888888777654 34578888888888865
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.74 E-value=2.8e-18 Score=209.39 Aligned_cols=245 Identities=21% Similarity=0.329 Sum_probs=172.5
Q ss_pred CceEEEEeCCCCCCccccccccccCCccccCcccccEEEecCCCCCCCCCCCCccccceeeccccccccccccCCCCCcC
Q 001348 458 NLRFLKFYMPKLFGISDMVCKLHLPQGLQYLSDELRYLHWHGYPLKMLPSNFTPENLIELNLLYSRIEQLWKGKKGCKSL 537 (1094)
Q Consensus 458 ~Lr~L~l~~n~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~i~~l~~~~~~l~~L 537 (1094)
+...|+++++.++ .+|.. +|+.|+.|++++|.++.+|..+. .+|++|++++|+++.++..+. .+|
T Consensus 179 ~~~~L~L~~~~Lt---------sLP~~---Ip~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l~--~~L 243 (754)
T PRK15370 179 NKTELRLKILGLT---------TIPAC---IPEQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATLP--DTI 243 (754)
T ss_pred CceEEEeCCCCcC---------cCCcc---cccCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhhh--ccc
Confidence 4566777777664 23432 35678999999999999987654 589999999999887765432 245
Q ss_pred cccCCCCCCCCCeEEeccCCCCCcccCCccC-CccEEEeccCCCCccccccccccccceeecccccccccchhhhhcCCc
Q 001348 538 RCFPNNIHFRSPISLNFSYCVNFKEFPQISG-NVRELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILESISTSICKLKS 616 (1094)
Q Consensus 538 ~~~~~~~~~~~l~~L~Ls~~~~l~~~p~~~~-~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~ 616 (1094)
+ .|++++|. +..+|..+. +|+.|+|++|++..+|..+. ++|++|+|++|++. .+|..+. .+
T Consensus 244 ~------------~L~Ls~N~-L~~LP~~l~s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~s 305 (754)
T PRK15370 244 Q------------EMELSINR-ITELPERLPSALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIR-TLPAHLP--SG 305 (754)
T ss_pred c------------EEECcCCc-cCcCChhHhCCCCEEECcCCccCccccccC--CCCcEEECCCCccc-cCcccch--hh
Confidence 5 89999885 557775444 89999999999999998775 58999999999875 4665543 57
Q ss_pred ccEEeccCCcccCccchhhcccCccceeeccCcccccccchhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCc
Q 001348 617 LLKLCLDNCSKLESFPEILEKMGCLEDIDLEGTAITELPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANES 696 (1094)
Q Consensus 617 L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~ 696 (1094)
|+.|++++|.+. .+|..+. ++|+.|++++|.++.+|..+. ++|+.|++++|.+. .+|..+. ++|+.|++++|
T Consensus 306 L~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N 377 (754)
T PRK15370 306 ITHLNVQSNSLT-ALPETLP--PGLKTLEAGENALTSLPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRN 377 (754)
T ss_pred HHHHHhcCCccc-cCCcccc--ccceeccccCCccccCChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCC
Confidence 999999998765 4565442 689999999999998887653 57777777777543 4555442 46666666666
Q ss_pred cCccCCccccCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeCCCCCCCCCCccc----cCCCCCCeeecCCCCCc
Q 001348 697 AISQLPSSITNLNELQVVWCSGCRGLILPPSFSGLSYLTELDLSCCNLIEIPQDI----GCLSLLRSLDLRKNNFE 768 (1094)
Q Consensus 697 ~i~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l----~~l~~L~~L~L~~n~l~ 768 (1094)
.++.+|..+. .+|+.|++++|++..+|..+ +.++++..|+|.+|.++
T Consensus 378 ~Lt~LP~~l~-------------------------~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 378 ALTNLPENLP-------------------------AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred cCCCCCHhHH-------------------------HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 6666554432 24555666666666555433 23456666777777665
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=1.8e-17 Score=156.67 Aligned_cols=171 Identities=27% Similarity=0.378 Sum_probs=141.2
Q ss_pred CCCCCCCCccccceeeccccccccccccCCCCCcCcccCCCCCCCCCeEEeccCCCCCcccCCccCCccEEEeccCCCCc
Q 001348 503 KMLPSNFTPENLIELNLLYSRIEQLWKGKKGCKSLRCFPNNIHFRSPISLNFSYCVNFKEFPQISGNVRELYLRGTPIEY 582 (1094)
Q Consensus 503 ~~lp~~~~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~~~~~~~~~~l~~L~Ls~~~~l~~~p~~~~~L~~L~L~~~~l~~ 582 (1094)
..+|..|++.+.+.|.|++|+++.++.++..+. +|+.|++.+|+|++
T Consensus 24 ~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~---------------------------------nlevln~~nnqie~ 70 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHNKLTVVPPNIAELK---------------------------------NLEVLNLSNNQIEE 70 (264)
T ss_pred hhcccccchhhhhhhhcccCceeecCCcHHHhh---------------------------------hhhhhhcccchhhh
Confidence 456777888888888999998887766544433 56678888889999
Q ss_pred cccccccccccceeecccccccccchhhhhcCCcccEEeccCCcccC-ccchhhcccCccceeeccCcccccccchhhcc
Q 001348 583 VPSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLE-SFPEILEKMGCLEDIDLEGTAITELPSSIEYL 661 (1094)
Q Consensus 583 lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~~p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l 661 (1094)
+|.+++.+++|+.|+++-|. +..+|..|+.++.|+.|||+.|+..+ .+|..|-.|+.|+.|+|+.|.++-+|..++++
T Consensus 71 lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~l 149 (264)
T KOG0617|consen 71 LPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKL 149 (264)
T ss_pred cChhhhhchhhhheecchhh-hhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhh
Confidence 99999999999999998776 46789999999999999999887665 48888888999999999999999999999999
Q ss_pred CCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccCCccccCC
Q 001348 662 GGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQLPSSITNL 708 (1094)
Q Consensus 662 ~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p~~l~~l 708 (1094)
++|+.|.+.+|.++ .+|..++.+..|++|.+.+|.++-+|+.++++
T Consensus 150 t~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel~~l 195 (264)
T KOG0617|consen 150 TNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPELANL 195 (264)
T ss_pred cceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhhhhh
Confidence 99999999887644 57888888888888888888888877765543
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.56 E-value=1e-16 Score=151.69 Aligned_cols=141 Identities=30% Similarity=0.494 Sum_probs=69.7
Q ss_pred chhhcccCccceeeccCcccccccchhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCc--cCCccccCCC
Q 001348 632 PEILEKMGCLEDIDLEGTAITELPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAIS--QLPSSITNLN 709 (1094)
Q Consensus 632 p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~--~~p~~l~~l~ 709 (1094)
|..+.++.+|+.|++.+|+|+++|.+++.+++|+.|++.-| .+..+|..|+.++.|+.|++.+|.+. .+|..|..++
T Consensus 49 ppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~ 127 (264)
T KOG0617|consen 49 PPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMT 127 (264)
T ss_pred CCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhhccccccccccCCcchhHHH
Confidence 33344444445555555555555555555555555555432 23344555555555555555555444 2344444444
Q ss_pred CCcEEEccCCCCCCCCCCCCCCCCCCEEeCCCCCCCCCCccccCCCCCCeeecCCCCCcccchh
Q 001348 710 ELQVVWCSGCRGLILPPSFSGLSYLTELDLSCCNLIEIPQDIGCLSLLRSLDLRKNNFEYLPAS 773 (1094)
Q Consensus 710 ~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~ 773 (1094)
.|+.|+++.|....+|+.++++.+|+.|.+.+|.+.++|..++.+..|+.|.+.+|+++-+|+.
T Consensus 128 tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlppe 191 (264)
T KOG0617|consen 128 TLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLPPE 191 (264)
T ss_pred HHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecChh
Confidence 4444444444444444444445555555555555555555555555555555555555555543
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.53 E-value=1.2e-15 Score=162.76 Aligned_cols=126 Identities=21% Similarity=0.201 Sum_probs=67.3
Q ss_pred ccCcccccEEEecCCCCCCCCCCC--Cccccceeeccccccccc-cccCCCCCcCcccCCCCCCCCCeEEeccCCCCCcc
Q 001348 486 QYLSDELRYLHWHGYPLKMLPSNF--TPENLIELNLLYSRIEQL-WKGKKGCKSLRCFPNNIHFRSPISLNFSYCVNFKE 562 (1094)
Q Consensus 486 ~~l~~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~n~i~~l-~~~~~~l~~L~~~~~~~~~~~l~~L~Ls~~~~l~~ 562 (1094)
..+|.+...++|+.|.|++||+.. .+.+|+.|||++|+|+.+ +..++.+..|. .|-+.++..++.
T Consensus 63 ~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~------------~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 63 ANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLL------------SLVLYGNNKITD 130 (498)
T ss_pred ccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhh------------HHHhhcCCchhh
Confidence 345667777888888888888653 477888888888888876 34455555555 444444444555
Q ss_pred cCCccC----CccEEEeccCCCCcc-ccccccccccceeecccccccccchhhhhcCCcccEEecc
Q 001348 563 FPQISG----NVRELYLRGTPIEYV-PSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLD 623 (1094)
Q Consensus 563 ~p~~~~----~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~ 623 (1094)
+|.... .|+.|.+.-+.+..+ ...+..|++|..|.+.+|.+...--.++..+.+++++.+.
T Consensus 131 l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA 196 (498)
T KOG4237|consen 131 LPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLA 196 (498)
T ss_pred hhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhh
Confidence 543211 334444444444433 2233444444444444444322111233344444444433
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.49 E-value=1.4e-15 Score=162.29 Aligned_cols=240 Identities=22% Similarity=0.226 Sum_probs=139.4
Q ss_pred CccEEEeccCCCCcc-ccccccccccceeecccccccccch-hhhhcCCcccEEeccCCcccCccchhhcccCccceeec
Q 001348 569 NVRELYLRGTPIEYV-PSSIDCLAKLEYLDLGHCTILESIS-TSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDL 646 (1094)
Q Consensus 569 ~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L 646 (1094)
+||.|||++|+|+.| |..|..|..|..|-+.+++.+..+| ..|++|.+|+.|.+.-|...-...+.|..|++|..|.+
T Consensus 92 ~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLsl 171 (498)
T KOG4237|consen 92 RLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSL 171 (498)
T ss_pred hhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcc
Confidence 445566666666655 5556666666655555522233333 34556666666666665555555566666666666666
Q ss_pred cCcccccccc-hhhccCCCcEEecCCCCCC------------CCCCccccCCCcccEEecCCccCccCCcc-c-cCCCCC
Q 001348 647 EGTAITELPS-SIEYLGGLTTLNLTGCSKL------------DNLPENLGNLKSLKMLCANESAISQLPSS-I-TNLNEL 711 (1094)
Q Consensus 647 ~~~~i~~lp~-~l~~l~~L~~L~L~~~~~~------------~~lp~~l~~l~~L~~L~l~~~~i~~~p~~-l-~~l~~L 711 (1094)
..|.+..++. ++..+..++++.+..|... ...|..++......-..+.+..+.++... + ..+..+
T Consensus 172 yDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl 251 (498)
T KOG4237|consen 172 YDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESL 251 (498)
T ss_pred cchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhH
Confidence 6666666655 4566666666655544311 11222222222222222333333322211 0 001111
Q ss_pred cEEEccCC-CCCCCCC-CCCCCCCCCEEeCCCCCCCCCC-ccccCCCCCCeeecCCCCCcccch-hhcCCCCCCEEEccC
Q 001348 712 QVVWCSGC-RGLILPP-SFSGLSYLTELDLSCCNLIEIP-QDIGCLSLLRSLDLRKNNFEYLPA-SMKHLSKLKSLDLSC 787 (1094)
Q Consensus 712 ~~L~l~~~-~~~~lp~-~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~ 787 (1094)
..--.+.+ .....|. .|..+++|++|+|++|.++.+- .+|..+..|+.|.|..|++..+.. .+.+++.|+.|+|.+
T Consensus 252 ~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~ 331 (498)
T KOG4237|consen 252 PSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYD 331 (498)
T ss_pred HHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecC
Confidence 11111112 1222222 3778999999999999999864 458888999999999999987765 467899999999999
Q ss_pred CCCCCCCCccccccccccccc
Q 001348 788 CNMLQSLPELPLQLKFLQAKD 808 (1094)
Q Consensus 788 ~~~l~~lp~~~~~L~~L~~~~ 808 (1094)
|+++..-|..+..+..|.-.+
T Consensus 332 N~it~~~~~aF~~~~~l~~l~ 352 (498)
T KOG4237|consen 332 NQITTVAPGAFQTLFSLSTLN 352 (498)
T ss_pred CeeEEEecccccccceeeeee
Confidence 999888887776665554443
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.48 E-value=1.7e-14 Score=163.82 Aligned_cols=109 Identities=21% Similarity=0.179 Sum_probs=49.4
Q ss_pred cCCCcccEEecCCccCc-----cCCccccCCCCCcEEEccCCCCC-----CCCCCCCCCCCCCEEeCCCCCCCCC-Cccc
Q 001348 683 GNLKSLKMLCANESAIS-----QLPSSITNLNELQVVWCSGCRGL-----ILPPSFSGLSYLTELDLSCCNLIEI-PQDI 751 (1094)
Q Consensus 683 ~~l~~L~~L~l~~~~i~-----~~p~~l~~l~~L~~L~l~~~~~~-----~lp~~l~~l~~L~~L~Ls~n~l~~l-p~~l 751 (1094)
..+++|+.|++++|.++ .++..+..+++|+.|++++|... .++..+..+++|+.|++++|.+++. +..+
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l 241 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence 33444444444444443 12223333345555555544421 1222344455566666666555431 0000
Q ss_pred -c----CCCCCCeeecCCCCCc-----ccchhhcCCCCCCEEEccCCCCC
Q 001348 752 -G----CLSLLRSLDLRKNNFE-----YLPASMKHLSKLKSLDLSCCNML 791 (1094)
Q Consensus 752 -~----~l~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~L~~~~~l 791 (1094)
. ..+.|+.|++++|.++ .+...+..+++|++|++++|.+.
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 0 1245666666666554 23334444556666666666554
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.47 E-value=1.4e-14 Score=164.42 Aligned_cols=239 Identities=21% Similarity=0.193 Sum_probs=143.8
Q ss_pred EEeccCCCCC----cccCCccC---CccEEEeccCCCCc-------cccccccccccceeecccccccccchhhhhcCCc
Q 001348 551 SLNFSYCVNF----KEFPQISG---NVRELYLRGTPIEY-------VPSSIDCLAKLEYLDLGHCTILESISTSICKLKS 616 (1094)
Q Consensus 551 ~L~Ls~~~~l----~~~p~~~~---~L~~L~L~~~~l~~-------lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~ 616 (1094)
.+++++|..- ..++.... +|++|+++++.+.. ++..+..+++|+.|++++|.+....+..+..+.+
T Consensus 27 ~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 106 (319)
T cd00116 27 VLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLR 106 (319)
T ss_pred EEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhc
Confidence 7777777531 12222222 47777777765552 2334556677777777777766555555555554
Q ss_pred ---ccEEeccCCcccC----ccchhhccc-CccceeeccCcccc-----cccchhhccCCCcEEecCCCCCCC----CCC
Q 001348 617 ---LLKLCLDNCSKLE----SFPEILEKM-GCLEDIDLEGTAIT-----ELPSSIEYLGGLTTLNLTGCSKLD----NLP 679 (1094)
Q Consensus 617 ---L~~L~L~~~~~~~----~~p~~l~~l-~~L~~L~L~~~~i~-----~lp~~l~~l~~L~~L~L~~~~~~~----~lp 679 (1094)
|++|++++|.... .+...+..+ ++|+.|++++|.++ .++..+..+++|++|++++|.+.+ .++
T Consensus 107 ~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 186 (319)
T cd00116 107 SSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALA 186 (319)
T ss_pred cCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHH
Confidence 7777777776552 233345555 77777777777766 344455666777777777776653 233
Q ss_pred ccccCCCcccEEecCCccCcc-----CCccccCCCCCcEEEccCCCCCCC-----CCC-CCCCCCCCEEeCCCCCCCC--
Q 001348 680 ENLGNLKSLKMLCANESAISQ-----LPSSITNLNELQVVWCSGCRGLIL-----PPS-FSGLSYLTELDLSCCNLIE-- 746 (1094)
Q Consensus 680 ~~l~~l~~L~~L~l~~~~i~~-----~p~~l~~l~~L~~L~l~~~~~~~l-----p~~-l~~l~~L~~L~Ls~n~l~~-- 746 (1094)
..+..+++|+.|++++|.++. ++..+..+++|+.|++++|..... ... ....+.|+.|++++|.+++
T Consensus 187 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~ 266 (319)
T cd00116 187 EGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDG 266 (319)
T ss_pred HHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHH
Confidence 344555677777777777652 334456667777777777764320 000 0124677777777777752
Q ss_pred ---CCccccCCCCCCeeecCCCCCccc-----chhhcCC-CCCCEEEccCCC
Q 001348 747 ---IPQDIGCLSLLRSLDLRKNNFEYL-----PASMKHL-SKLKSLDLSCCN 789 (1094)
Q Consensus 747 ---lp~~l~~l~~L~~L~L~~n~l~~l-----p~~l~~l-~~L~~L~L~~~~ 789 (1094)
+...+..+++|+.|++++|.++.- ...+... +.|++|++.+|+
T Consensus 267 ~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 267 AKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 333445557777777777777733 2234444 577777777665
No 25
>PLN03194 putative disease resistance protein; Provisional
Probab=99.45 E-value=9.5e-14 Score=136.34 Aligned_cols=70 Identities=23% Similarity=0.349 Sum_probs=60.0
Q ss_pred CCCEEEeEeecCCccccccc-cCcHHHHHHHHHHhhccChHHHHHHHHHHHHHhhccCCCCCC-CchhHHHHHHHHHHHH
Q 001348 2 NGQKVLPVFYHVDPSDVRKQ-TGRVGDAFVVHEKQFREMPEKVQKWRAVLTEASNLSGWDSKK-IRPEAKLVDEIVKDIL 79 (1094)
Q Consensus 2 ~~~~v~pvfy~vdps~vr~q-~g~~~~~~~~~~~~~~~~~~~~~~w~~al~~~a~~~g~~~~~-~~~e~~~i~~i~~~v~ 79 (1094)
.+++||||||+|||+|||+| +|. ...+++++||+||++||+++|+++.. .++|+++|++|++.|.
T Consensus 108 ~~~~ViPIFY~VdPsdVr~q~~~~-------------~~~e~v~~Wr~AL~~va~l~G~~~~~~~~~e~e~i~~iv~~v~ 174 (187)
T PLN03194 108 SKKRVIPIFCDVKPSQLRVVDNGT-------------CPDEEIRRFNWALEEAKYTVGLTFDSLKGNWSEVVTMASDAVI 174 (187)
T ss_pred cCCEEEEEEecCCHHHhhccccCC-------------CCHHHHHHHHHHHHHHhccccccCCCCCCCHHHHHHHHHHHHH
Confidence 35689999999999999997 444 23589999999999999999997753 4789999999999999
Q ss_pred hcccc
Q 001348 80 KKLNY 84 (1094)
Q Consensus 80 ~~l~~ 84 (1094)
++|-.
T Consensus 175 k~l~~ 179 (187)
T PLN03194 175 KNLIE 179 (187)
T ss_pred HHHHH
Confidence 88743
No 26
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.29 E-value=1.9e-10 Score=149.82 Aligned_cols=292 Identities=14% Similarity=0.154 Sum_probs=182.7
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHH
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRD 167 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~ 167 (1094)
|.....+|-|+.-++.+.. ....+++.|.|++|.||||++..+..+ +..++|+.. .+.. .+......
T Consensus 10 p~~~~~~~~R~rl~~~l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~~----~~~~~w~~l-~~~d---~~~~~f~~ 76 (903)
T PRK04841 10 PVRLHNTVVRERLLAKLSG-----ANNYRLVLVTSPAGYGKTTLISQWAAG----KNNLGWYSL-DESD---NQPERFAS 76 (903)
T ss_pred CCCccccCcchHHHHHHhc-----ccCCCeEEEECCCCCCHHHHHHHHHHh----CCCeEEEec-Cccc---CCHHHHHH
Confidence 6677788999876666643 236789999999999999999998853 335778843 2211 23344445
Q ss_pred HHHHhhhccCCc----c------cC-CCc---hHHHHHHhc--CCeEEEEEecCCChH------hHHHHhcCCCCCCCCc
Q 001348 168 RLLSQILDESIR----I------ET-PYI---PHYIRERLQ--CMKVFIVLDDVNKFR------QLEYLAGGLDRFGLGS 225 (1094)
Q Consensus 168 ~ll~~l~~~~~~----~------~~-~~~---~~~l~~~L~--~kr~LlVLDdv~~~~------~~~~l~~~~~~~~~gs 225 (1094)
.++..+...... . .. ... ...+...+. +.+++|||||+...+ .+..+... ..++.
T Consensus 77 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~---~~~~~ 153 (903)
T PRK04841 77 YLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRH---QPENL 153 (903)
T ss_pred HHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHh---CCCCe
Confidence 555554311111 0 00 111 122222332 678999999996542 23333333 34567
Q ss_pred eEEEEeCChhhhh--hc-CcCeEEEcc----CCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHHHHHhhh
Q 001348 226 RIIVTSRDKQVLE--KY-GVDHIYEVE----ELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAIKVLASF 298 (1094)
Q Consensus 226 rIiiTTR~~~v~~--~~-~~~~~~~l~----~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg~~ 298 (1094)
++|||||...-.. .. ......++. .|+.+|+.++|....... --.+.+.++.+.++|.|+++..++..
T Consensus 154 ~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~-----~~~~~~~~l~~~t~Gwp~~l~l~~~~ 228 (903)
T PRK04841 154 TLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP-----IEAAESSRLCDDVEGWATALQLIALS 228 (903)
T ss_pred EEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC-----CCHHHHHHHHHHhCChHHHHHHHHHH
Confidence 8889999842211 11 112345555 999999999998765221 12245678999999999999998877
Q ss_pred hcCCCHHHHHHHHHHhhcCCCccHHHHHHHh-hhcccHHhhhhhcccccccCCcCHHHHHHHHhCCCccccchhhhhccC
Q 001348 299 FHRKSKLDWEIALQNLKQISGPEILAVLKIS-YDELNWEAKNLFLDIACFFKGEDINFVTLILDNHYSVHYGLSVLVDKS 377 (1094)
Q Consensus 299 L~~~~~~~w~~~l~~l~~~~~~~i~~~L~~s-y~~L~~~~k~~fl~~a~f~~~~~~~~~~~il~~~~~~~~~l~~L~~~s 377 (1094)
+...... .......+...+...+...+.-. ++.||+..+..++..|+++ .++.+....+.. .-.....++.|.+.+
T Consensus 229 ~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~-~~~~~~~L~~l~~~~ 305 (903)
T PRK04841 229 ARQNNSS-LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTG-EENGQMRLEELERQG 305 (903)
T ss_pred HhhCCCc-hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcC-CCcHHHHHHHHHHCC
Confidence 7543210 01112222222234566665444 8899999999999999986 555554444432 223456688999999
Q ss_pred ceeEe----CCEEEeeHHHHHHHHHHHhhc
Q 001348 378 LVRIS----RNKLEMHDLLQDMGREIVSQE 403 (1094)
Q Consensus 378 Li~~~----~~~~~mHdli~~~~~~i~~~e 403 (1094)
++... ..+|..|++++++.+.-...+
T Consensus 306 l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 306 LFIQRMDDSGEWFRYHPLFASFLRHRCQWE 335 (903)
T ss_pred CeeEeecCCCCEEehhHHHHHHHHHHHHhc
Confidence 96532 237999999999999876443
No 27
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.29 E-value=3.6e-12 Score=158.54 Aligned_cols=227 Identities=28% Similarity=0.324 Sum_probs=149.1
Q ss_pred CccEEEeccCCCCccccccccccccceeeccccc--ccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeec
Q 001348 569 NVRELYLRGTPIEYVPSSIDCLAKLEYLDLGHCT--ILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDL 646 (1094)
Q Consensus 569 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~--~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L 646 (1094)
..+...+-+|.+..++....+- +|++|-+.+|. +....+..|..++.|++|||++|...+.+|+.++++-+|++|++
T Consensus 524 ~~rr~s~~~~~~~~~~~~~~~~-~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L 602 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEHIAGSSENP-KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL 602 (889)
T ss_pred heeEEEEeccchhhccCCCCCC-ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence 5677777778777776666543 68888888775 33333344667888888888888888888888888888888888
Q ss_pred cCcccccccchhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCcc---CCccccCCCCCcEEEccCCC---
Q 001348 647 EGTAITELPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQ---LPSSITNLNELQVVWCSGCR--- 720 (1094)
Q Consensus 647 ~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~---~p~~l~~l~~L~~L~l~~~~--- 720 (1094)
+++.++.+|.++++|..|.+|++..+..+..+|..+..|.+|++|.+....... ....+.++++|+.+.+....
T Consensus 603 ~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~ 682 (889)
T KOG4658|consen 603 SDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLL 682 (889)
T ss_pred cCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHh
Confidence 888888888888888888888888887777777777778888888776654221 12334455555555443222
Q ss_pred -----------------------CCCCCCCCCCCCCCCEEeCCCCCCCCCCc-cc-----c-CCCCCCeeecCCCCCccc
Q 001348 721 -----------------------GLILPPSFSGLSYLTELDLSCCNLIEIPQ-DI-----G-CLSLLRSLDLRKNNFEYL 770 (1094)
Q Consensus 721 -----------------------~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~l-----~-~l~~L~~L~L~~n~l~~l 770 (1094)
....+..+..+.+|+.|.+.+|.+.++.. .. . .+++|..+.+.++..-..
T Consensus 683 ~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~ 762 (889)
T KOG4658|consen 683 LEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRD 762 (889)
T ss_pred HhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccc
Confidence 22333445566666677666666654221 10 0 123444444444444444
Q ss_pred chhhcCCCCCCEEEccCCCCCCCCCc
Q 001348 771 PASMKHLSKLKSLDLSCCNMLQSLPE 796 (1094)
Q Consensus 771 p~~l~~l~~L~~L~L~~~~~l~~lp~ 796 (1094)
+.+....|+|+.|.+..|+..+.+..
T Consensus 763 l~~~~f~~~L~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 763 LTWLLFAPHLTSLSLVSCRLLEDIIP 788 (889)
T ss_pred cchhhccCcccEEEEecccccccCCC
Confidence 55555667777777777776665554
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.19 E-value=2e-12 Score=144.24 Aligned_cols=191 Identities=27% Similarity=0.416 Sum_probs=119.7
Q ss_pred ceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccCcccccccchhhccCCCcEEecCCCC
Q 001348 594 EYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEGTAITELPSSIEYLGGLTTLNLTGCS 673 (1094)
Q Consensus 594 ~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~ 673 (1094)
...||+.|++ ..+|..++.+-.|+.|.|..|. ...+|..+.++..|.+|+|+.|++..+|..++.|+ |+.|.+++|
T Consensus 78 ~~aDlsrNR~-~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN- 153 (722)
T KOG0532|consen 78 VFADLSRNRF-SELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN- 153 (722)
T ss_pred hhhhcccccc-ccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC-
Confidence 3444555443 2344445555555555555432 33455555556666666666666666666555543 555555543
Q ss_pred CCCCCCccccCCCcccEEecCCccCccCCccccCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeCCCCCCCCCCccccC
Q 001348 674 KLDNLPENLGNLKSLKMLCANESAISQLPSSITNLNELQVVWCSGCRGLILPPSFSGLSYLTELDLSCCNLIEIPQDIGC 753 (1094)
Q Consensus 674 ~~~~lp~~l~~l~~L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~ 753 (1094)
+++.+|+.++.+..|..|+.+.|.+..+|+.++.+.+|+.|.+..|....+|..+..| .|..||+++|+++.||..|..
T Consensus 154 kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv~fr~ 232 (722)
T KOG0532|consen 154 KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPVDFRK 232 (722)
T ss_pred ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecchhhhh
Confidence 3455666666666666666666666666666666666666666666666666666633 477888888888888888888
Q ss_pred CCCCCeeecCCCCCcccchhhc---CCCCCCEEEccCCC
Q 001348 754 LSLLRSLDLRKNNFEYLPASMK---HLSKLKSLDLSCCN 789 (1094)
Q Consensus 754 l~~L~~L~L~~n~l~~lp~~l~---~l~~L~~L~L~~~~ 789 (1094)
|..|++|.|.+|.+.+-|..+. ...-.++|+..-|.
T Consensus 233 m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 233 MRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 8888888888888887776552 23445777777774
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.11 E-value=1e-10 Score=136.97 Aligned_cols=198 Identities=33% Similarity=0.450 Sum_probs=145.0
Q ss_pred eeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccC-ccceeeccCcccccccchhhccCCCcEEecCCCC
Q 001348 595 YLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMG-CLEDIDLEGTAITELPSSIEYLGGLTTLNLTGCS 673 (1094)
Q Consensus 595 ~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~-~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~ 673 (1094)
.|++..+....... .+..++.++.|++.++.. ..+|.....+. +|+.|++++|.+..+|..++.+++|+.|++++|.
T Consensus 97 ~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i-~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNI-TDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCch-hhhcccceeEEecCCccc-ccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch
Confidence 45555554423222 244456677777766543 34445555553 7777777777777777777777777777777765
Q ss_pred CCCCCCccccCCCcccEEecCCccCccCCccccCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeCCCCCCCCCCccccC
Q 001348 674 KLDNLPENLGNLKSLKMLCANESAISQLPSSITNLNELQVVWCSGCRGLILPPSFSGLSYLTELDLSCCNLIEIPQDIGC 753 (1094)
Q Consensus 674 ~~~~lp~~l~~l~~L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~ 753 (1094)
+ ..+|...+.+++|+.|++++|.+..+|..+..+..|+.|.+++|.....+..+.++.++..|.+.+|.+..++..++.
T Consensus 175 l-~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~ 253 (394)
T COG4886 175 L-SDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGN 253 (394)
T ss_pred h-hhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhcc
Confidence 3 445555557778888888888888888777677778888888887667777788888888888888888887788888
Q ss_pred CCCCCeeecCCCCCcccchhhcCCCCCCEEEccCCCCCCCCCc
Q 001348 754 LSLLRSLDLRKNNFEYLPASMKHLSKLKSLDLSCCNMLQSLPE 796 (1094)
Q Consensus 754 l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~ 796 (1094)
+++|+.|++++|.++.++. +..+.+|+.|+++++.....+|.
T Consensus 254 l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 254 LSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred ccccceecccccccccccc-ccccCccCEEeccCccccccchh
Confidence 8889999999999888886 88888999999998887776664
No 30
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.10 E-value=6e-09 Score=121.93 Aligned_cols=247 Identities=17% Similarity=0.098 Sum_probs=149.2
Q ss_pred CCCCCCeeehhHHHHHHHhccccC--CCCeEEEEEEecCCCchhhHHHHHHHHHhcccc--ceEEeeechhhhccCCChH
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIG--LPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFE--SKCFMANVREESEKGGGLV 163 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~~~~~~~~~~~~~~ 163 (1094)
...++.++||+.++++|...+... ......+.|+|++|+|||++++.+++++..... ..+++.+ ... .+..
T Consensus 26 ~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~-~~~----~~~~ 100 (394)
T PRK00411 26 DYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINC-QID----RTRY 100 (394)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEEC-CcC----CCHH
Confidence 346678999999999999998432 234456789999999999999999998766542 2334332 211 3445
Q ss_pred HHHHHHHHhhhccCCccc--CCC-chHHHHHHhc--CCeEEEEEecCCChH------hHHHHhcCCCCCCCCce--EEEE
Q 001348 164 HLRDRLLSQILDESIRIE--TPY-IPHYIRERLQ--CMKVFIVLDDVNKFR------QLEYLAGGLDRFGLGSR--IIVT 230 (1094)
Q Consensus 164 ~l~~~ll~~l~~~~~~~~--~~~-~~~~l~~~L~--~kr~LlVLDdv~~~~------~~~~l~~~~~~~~~gsr--IiiT 230 (1094)
.+...++.++.....+.. ... ....+.+.+. ++.++||||+++... .+..+...... .++++ +|.+
T Consensus 101 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i 179 (394)
T PRK00411 101 AIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGI 179 (394)
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEE
Confidence 677777777765322111 111 1455555554 456899999997643 34454433222 12333 6666
Q ss_pred eCChhhhhhcC-------cCeEEEccCCCHHHHHHHHHhhccc---CCCCC-chHHHHHHHHHHHhCCCchHHHHHhhhh
Q 001348 231 SRDKQVLEKYG-------VDHIYEVEELNNIEALELFCKYAFR---QNHHP-QDLMVISGRVVDYARGNPLAIKVLASFF 299 (1094)
Q Consensus 231 TR~~~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~af~---~~~~~-~~~~~~~~~i~~~~~GlPLal~~lg~~L 299 (1094)
+.+..+..... ....+.+++++.++..+++..++-. ..... +.+..+++......|..+.|+.++-.+.
T Consensus 180 ~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~ 259 (394)
T PRK00411 180 SSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAG 259 (394)
T ss_pred ECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 66654433211 1246789999999999999877632 22222 2233333333333455777776664322
Q ss_pred -----cCC---CHHHHHHHHHHhhcCCCccHHHHHHHhhhcccHHhhhhhcccccc
Q 001348 300 -----HRK---SKLDWEIALQNLKQISGPEILAVLKISYDELNWEAKNLFLDIACF 347 (1094)
Q Consensus 300 -----~~~---~~~~w~~~l~~l~~~~~~~i~~~L~~sy~~L~~~~k~~fl~~a~f 347 (1094)
.+. +.+..+.++++.. .....-.+..||.++|..+.-++..
T Consensus 260 ~~a~~~~~~~I~~~~v~~a~~~~~-------~~~~~~~~~~L~~~~k~~L~ai~~~ 308 (394)
T PRK00411 260 LIAEREGSRKVTEEDVRKAYEKSE-------IVHLSEVLRTLPLHEKLLLRAIVRL 308 (394)
T ss_pred HHHHHcCCCCcCHHHHHHHHHHHH-------HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 111 5566666666551 2334556789999998887666543
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.07 E-value=6.6e-12 Score=140.25 Aligned_cols=191 Identities=27% Similarity=0.400 Sum_probs=164.4
Q ss_pred CCcccEEeccCCcccCccchhhcccCccceeeccCcccccccchhhccCCCcEEecCCCCCCCCCCccccCCCcccEEec
Q 001348 614 LKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEGTAITELPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCA 693 (1094)
Q Consensus 614 l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l 693 (1094)
+.--...+|+.|. ...+|..+..+..|+.|.|..|.+..+|..++++..|+.|+|+.|. +..+|..+..|+ |+.|.+
T Consensus 74 ltdt~~aDlsrNR-~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 74 LTDTVFADLSRNR-FSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred ccchhhhhccccc-cccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEE
Confidence 3334456777754 4678899999999999999999999999999999999999999865 556777777765 899999
Q ss_pred CCccCccCCccccCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeCCCCCCCCCCccccCCCCCCeeecCCCCCcccchh
Q 001348 694 NESAISQLPSSITNLNELQVVWCSGCRGLILPPSFSGLSYLTELDLSCCNLIEIPQDIGCLSLLRSLDLRKNNFEYLPAS 773 (1094)
Q Consensus 694 ~~~~i~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~ 773 (1094)
++|.++.+|..++.+..|..|+.+.|....+|+.++++.+|+.|++..|++..+|..+..| .|..||++.|++..||..
T Consensus 151 sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv~ 229 (722)
T KOG0532|consen 151 SNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPVD 229 (722)
T ss_pred ecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecchh
Confidence 9999999999999999999999999999999999999999999999999999999999865 499999999999999999
Q ss_pred hcCCCCCCEEEccCCCCCCCCCcc------cccccccccccc
Q 001348 774 MKHLSKLKSLDLSCCNMLQSLPEL------PLQLKFLQAKDC 809 (1094)
Q Consensus 774 l~~l~~L~~L~L~~~~~l~~lp~~------~~~L~~L~~~~c 809 (1094)
+.+|..|++|-|.+|++. +-|.. .--.++|.+.-|
T Consensus 230 fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 230 FRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 999999999999999864 33321 112466776666
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.05 E-value=2.1e-10 Score=134.21 Aligned_cols=184 Identities=32% Similarity=0.423 Sum_probs=113.7
Q ss_pred cccccccceeecccccccccchhhhhcCC-cccEEeccCCcccCccchhhcccCccceeeccCcccccccchhhccCCCc
Q 001348 587 IDCLAKLEYLDLGHCTILESISTSICKLK-SLLKLCLDNCSKLESFPEILEKMGCLEDIDLEGTAITELPSSIEYLGGLT 665 (1094)
Q Consensus 587 i~~L~~L~~L~L~~~~~~~~lp~~i~~l~-~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~ 665 (1094)
+..++.+..|++.++.+.. +|.....+. +|+.|++++|.+ ..+|..++++++|+.|++++|.++.+|...+.+++|+
T Consensus 112 ~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i-~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 112 LLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLN 189 (394)
T ss_pred hhcccceeEEecCCccccc-Cccccccchhhcccccccccch-hhhhhhhhccccccccccCCchhhhhhhhhhhhhhhh
Confidence 3333444445544444322 333333332 455555554332 2333445555555555555555555555555555555
Q ss_pred EEecCCCCCCCCCCccccCCCcccEEecCCccCccCCccccCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeCCCCCCC
Q 001348 666 TLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQLPSSITNLNELQVVWCSGCRGLILPPSFSGLSYLTELDLSCCNLI 745 (1094)
Q Consensus 666 ~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~ 745 (1094)
.|++++|. +..+|..+..+..|++|.+++|.+...+..+.++.++..+.+.+|+...++..+..+++|+.|++++|.++
T Consensus 190 ~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~ 268 (394)
T COG4886 190 NLDLSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS 268 (394)
T ss_pred heeccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccc
Confidence 55555543 33444444445556666666665566666777777777777777777776777888888999999999998
Q ss_pred CCCccccCCCCCCeeecCCCCCcccchhh
Q 001348 746 EIPQDIGCLSLLRSLDLRKNNFEYLPASM 774 (1094)
Q Consensus 746 ~lp~~l~~l~~L~~L~L~~n~l~~lp~~l 774 (1094)
+++. ++.+.+|+.|++++|.+..++...
T Consensus 269 ~i~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 269 SISS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred cccc-ccccCccCEEeccCccccccchhh
Confidence 8877 888889999999999888666443
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.03 E-value=5.7e-11 Score=122.59 Aligned_cols=129 Identities=25% Similarity=0.265 Sum_probs=79.3
Q ss_pred CccceeeccCcccccccchhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccCCccccCCCCCcEEEccC
Q 001348 639 GCLEDIDLEGTAITELPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQLPSSITNLNELQVVWCSG 718 (1094)
Q Consensus 639 ~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~ 718 (1094)
+.|++|||++|.|+.+..++.-++.++.|+++.|. +..+-. +..+.+|+.|++++
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~------------------------i~~v~n-La~L~~L~~LDLS~ 338 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNR------------------------IRTVQN-LAELPQLQLLDLSG 338 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccc------------------------eeeehh-hhhcccceEeeccc
Confidence 44556666666666555555555555555555554 443322 44445555555555
Q ss_pred CCCCCCCCCCCCCCCCCEEeCCCCCCCCCCccccCCCCCCeeecCCCCCcccch--hhcCCCCCCEEEccCCCCCCC
Q 001348 719 CRGLILPPSFSGLSYLTELDLSCCNLIEIPQDIGCLSLLRSLDLRKNNFEYLPA--SMKHLSKLKSLDLSCCNMLQS 793 (1094)
Q Consensus 719 ~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~--~l~~l~~L~~L~L~~~~~l~~ 793 (1094)
|....+..|-..+-+.++|.|+.|.+.++ +.++.+-+|..|++++|++..+.+ .|+++|.|+.|.|.+|++.+.
T Consensus 339 N~Ls~~~Gwh~KLGNIKtL~La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 339 NLLAECVGWHLKLGNIKTLKLAQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred chhHhhhhhHhhhcCEeeeehhhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 55444444445566667777777766554 345666677888888887776543 678888888888888886543
No 34
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.01 E-value=5.3e-10 Score=120.61 Aligned_cols=195 Identities=21% Similarity=0.244 Sum_probs=101.9
Q ss_pred eeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHH------HH
Q 001348 94 LIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHL------RD 167 (1094)
Q Consensus 94 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l------~~ 167 (1094)
|+||++++++|.+.+..+ ..+.+.|+|+.|+|||+|++.+.+..+..-...+|+......... ..... .+
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~--~~~~~~~~~~~~~ 76 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNES--SLRSFIEETSLAD 76 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHH--HHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhh--HHHHHHHHHHHHH
Confidence 799999999999998643 356889999999999999999999875443345555443322111 01111 11
Q ss_pred HHHHhhhccCCc-----------ccCCCchHHHHHHhc--CCeEEEEEecCCChH-----------hHHHHhcCCCCCCC
Q 001348 168 RLLSQILDESIR-----------IETPYIPHYIRERLQ--CMKVFIVLDDVNKFR-----------QLEYLAGGLDRFGL 223 (1094)
Q Consensus 168 ~ll~~l~~~~~~-----------~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~~-----------~~~~l~~~~~~~~~ 223 (1094)
.+...+...... .........+.+.+. +++++||+||++... .+..+...... ..
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~ 155 (234)
T PF01637_consen 77 ELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS-QQ 155 (234)
T ss_dssp HCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----T
T ss_pred HHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc-cC
Confidence 111111111000 011111333334443 346999999996555 12222222121 23
Q ss_pred CceEEEEeCChhhhhh--------cCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHHHH
Q 001348 224 GSRIIVTSRDKQVLEK--------YGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAIKV 294 (1094)
Q Consensus 224 gsrIiiTTR~~~v~~~--------~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 294 (1094)
.-.+|+++....+... .+....+.+++|+.+++++++...+-.. ..-+.-.+..++|+..++|+|..|..
T Consensus 156 ~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 156 NVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp TEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred CceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 3345555555544433 2333459999999999999999865332 11012345568999999999998764
No 35
>PF05729 NACHT: NACHT domain
Probab=99.00 E-value=2.6e-09 Score=108.44 Aligned_cols=143 Identities=23% Similarity=0.336 Sum_probs=87.2
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHhcccc-----ceEEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHH
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQISRKFE-----SKCFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIR 190 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-----~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~ 190 (1094)
|++.|.|.+|+||||+++.++.++..... ...|+...+..... .....+...+..+....... ....+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~-----~~~~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDS-NNSRSLADLLFDQLPESIAP-----IEELLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhc-cccchHHHHHHHhhccchhh-----hHHHHH
Confidence 58999999999999999999998766542 23344444444332 11123333333332211111 111111
Q ss_pred H-HhcCCeEEEEEecCCChHh---------HHHHhc-CCC-CCCCCceEEEEeCChhh---hhhcCcCeEEEccCCCHHH
Q 001348 191 E-RLQCMKVFIVLDDVNKFRQ---------LEYLAG-GLD-RFGLGSRIIVTSRDKQV---LEKYGVDHIYEVEELNNIE 255 (1094)
Q Consensus 191 ~-~L~~kr~LlVLDdv~~~~~---------~~~l~~-~~~-~~~~gsrIiiTTR~~~v---~~~~~~~~~~~l~~L~~~e 255 (1094)
. .-+.++++||+|++|+... +..+.. -.. ...++.+||||+|.... .........+++.+|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 1 2256899999999966533 112221 111 13568999999998876 2233444689999999999
Q ss_pred HHHHHHhhc
Q 001348 256 ALELFCKYA 264 (1094)
Q Consensus 256 a~~Lf~~~a 264 (1094)
..+++.++.
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999997764
No 36
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.98 E-value=4.8e-08 Score=113.11 Aligned_cols=246 Identities=15% Similarity=0.119 Sum_probs=143.0
Q ss_pred CCCCCCeeehhHHHHHHHhcccc--CCCCeEEEEEEecCCCchhhHHHHHHHHHhcccc------ceEEeeechhhhccC
Q 001348 88 SSDFEGLIGLDARIERIKSLLCI--GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFE------SKCFMANVREESEKG 159 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~------~~~~~~~~~~~~~~~ 159 (1094)
...++.++||++++++|...+.. .......+.|+|++|+|||++++++++++..... ..+|+.+.. .
T Consensus 11 ~~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~-~---- 85 (365)
T TIGR02928 11 DYVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI-L---- 85 (365)
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC-C----
Confidence 34556899999999999999864 2234567899999999999999999997654322 134443322 1
Q ss_pred CChHHHHHHHHHhhhc--cCCcccCC---CchHHHHHHh--cCCeEEEEEecCCChH-----hHHHHhcCCCC-C--CCC
Q 001348 160 GGLVHLRDRLLSQILD--ESIRIETP---YIPHYIRERL--QCMKVFIVLDDVNKFR-----QLEYLAGGLDR-F--GLG 224 (1094)
Q Consensus 160 ~~~~~l~~~ll~~l~~--~~~~~~~~---~~~~~l~~~L--~~kr~LlVLDdv~~~~-----~~~~l~~~~~~-~--~~g 224 (1094)
.+...+...++.++.. ...+.... .....+.+.+ .+++++||||+++... .+..+.....+ . +..
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~ 165 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAK 165 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCe
Confidence 3345677777777742 11111111 1134444555 3568999999997761 13333322111 1 123
Q ss_pred ceEEEEeCChhhhhhc------C-cCeEEEccCCCHHHHHHHHHhhcc---cCCCCCchHHHHHHHHHHHhCCCchHH-H
Q 001348 225 SRIIVTSRDKQVLEKY------G-VDHIYEVEELNNIEALELFCKYAF---RQNHHPQDLMVISGRVVDYARGNPLAI-K 293 (1094)
Q Consensus 225 srIiiTTR~~~v~~~~------~-~~~~~~l~~L~~~ea~~Lf~~~af---~~~~~~~~~~~~~~~i~~~~~GlPLal-~ 293 (1094)
..+|.+|.+......+ . ....+.+++.+.++..+++..++- ....-.++..+.+.+++....|.|-.+ .
T Consensus 166 v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~ 245 (365)
T TIGR02928 166 VGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAID 245 (365)
T ss_pred EEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHH
Confidence 3455566544332211 0 125688999999999999988763 222223333445556677777887443 3
Q ss_pred HHhhhh----c-C---CCHHHHHHHHHHhhcCCCccHHHHHHHhhhcccHHhhhhhcccc
Q 001348 294 VLASFF----H-R---KSKLDWEIALQNLKQISGPEILAVLKISYDELNWEAKNLFLDIA 345 (1094)
Q Consensus 294 ~lg~~L----~-~---~~~~~w~~~l~~l~~~~~~~i~~~L~~sy~~L~~~~k~~fl~~a 345 (1094)
++-.+. . + -+.+..+.+.+.+. .....-+...||.++|.++..++
T Consensus 246 ~l~~a~~~a~~~~~~~it~~~v~~a~~~~~-------~~~~~~~i~~l~~~~~~~l~ai~ 298 (365)
T TIGR02928 246 LLRVAGEIAEREGAERVTEDHVEKAQEKIE-------KDRLLELIRGLPTHSKLVLLAIA 298 (365)
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHH-------HHHHHHHHHcCCHHHHHHHHHHH
Confidence 322211 1 1 14555555555442 23344566788888887766555
No 37
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.98 E-value=4.7e-09 Score=118.19 Aligned_cols=267 Identities=15% Similarity=0.142 Sum_probs=149.1
Q ss_pred CCeeehhHHHHHHHhccccC---CCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHH
Q 001348 92 EGLIGLDARIERIKSLLCIG---LPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDR 168 (1094)
Q Consensus 92 ~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ 168 (1094)
.+|||++..+++|..++... ......+.++|++|+|||+||+++++++...+. +...... .....+..
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~----~~~~~~~----~~~~~l~~- 74 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK----ITSGPAL----EKPGDLAA- 74 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE----Eeccchh----cCchhHHH-
Confidence 57999999999999888531 233556889999999999999999998754331 1111100 11111111
Q ss_pred HHHhhhccCC------cccCCCchHHHHHHhcCCeEEEEEecCCChHhHHHHhcCCCCCCCCceEEEEeCChhhhhhc--
Q 001348 169 LLSQILDESI------RIETPYIPHYIRERLQCMKVFIVLDDVNKFRQLEYLAGGLDRFGLGSRIIVTSRDKQVLEKY-- 240 (1094)
Q Consensus 169 ll~~l~~~~~------~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~-- 240 (1094)
.+..+..... ..-.....+.+...+.+.+..+|+|+..+..++.... .+.+-|..||+...+....
T Consensus 75 ~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~------~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 75 ILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDL------PPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecC------CCeEEEEecCCccccCHHHHh
Confidence 1111111000 0000011233444445555556666554444332211 2245566677765443321
Q ss_pred CcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHHHHHhhhhcCCCHHHHHHHHH-HhhcCCC
Q 001348 241 GVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAIKVLASFFHRKSKLDWEIALQ-NLKQISG 319 (1094)
Q Consensus 241 ~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg~~L~~~~~~~w~~~l~-~l~~~~~ 319 (1094)
.....++++.++.++..+++.+.+..... .--.+....|++.|+|.|-.+..++..+ |..+.. .-.....
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~--~~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a~~~~~~~it~ 219 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNV--EIEPEAALEIARRSRGTPRIANRLLRRV-------RDFAQVRGQKIINR 219 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCC--CcCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHHHHcCCCCcCH
Confidence 12357899999999999999988753222 1223566789999999997665555432 111100 0000000
Q ss_pred ---ccHHHHHHHhhhcccHHhhhhhc-ccccccC-CcCHHHHHHHHhC-CCccccchh-hhhccCceeEe
Q 001348 320 ---PEILAVLKISYDELNWEAKNLFL-DIACFFK-GEDINFVTLILDN-HYSVHYGLS-VLVDKSLVRIS 382 (1094)
Q Consensus 320 ---~~i~~~L~~sy~~L~~~~k~~fl-~~a~f~~-~~~~~~~~~il~~-~~~~~~~l~-~L~~~sLi~~~ 382 (1094)
......+...|.++++.++..+. .++.+.. ....+.+...+.. ...+...++ .|++++||...
T Consensus 220 ~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 220 DIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccC
Confidence 11222245567888888887666 4455543 2455556666655 444555577 69999999643
No 38
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.1e-10 Score=127.10 Aligned_cols=158 Identities=22% Similarity=0.246 Sum_probs=78.9
Q ss_pred hcccCccceeeccCcccccccch--hhccCCCcEEecCCCCCCC-CCCccccCCCcccEEecCCcc-CccCCccccCCCC
Q 001348 635 LEKMGCLEDIDLEGTAITELPSS--IEYLGGLTTLNLTGCSKLD-NLPENLGNLKSLKMLCANESA-ISQLPSSITNLNE 710 (1094)
Q Consensus 635 l~~l~~L~~L~L~~~~i~~lp~~--l~~l~~L~~L~L~~~~~~~-~lp~~l~~l~~L~~L~l~~~~-i~~~p~~l~~l~~ 710 (1094)
...+++|+.|+|+.|.+...-++ -..++.|+.|.|++|.+.. .+-..+..+++|+.|++..|. +..-......++.
T Consensus 168 ~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~ 247 (505)
T KOG3207|consen 168 AEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQT 247 (505)
T ss_pred HHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhH
Confidence 34445555555555544322111 1234455555555555442 122223344555555555552 2211222333455
Q ss_pred CcEEEccCCCCCCCC--CCCCCCCCCCEEeCCCCCCCC--CCcc-----ccCCCCCCeeecCCCCCcccch--hhcCCCC
Q 001348 711 LQVVWCSGCRGLILP--PSFSGLSYLTELDLSCCNLIE--IPQD-----IGCLSLLRSLDLRKNNFEYLPA--SMKHLSK 779 (1094)
Q Consensus 711 L~~L~l~~~~~~~lp--~~l~~l~~L~~L~Ls~n~l~~--lp~~-----l~~l~~L~~L~L~~n~l~~lp~--~l~~l~~ 779 (1094)
|+.|+|++|....++ ...+.++.|..|+++.|.+.+ +|+. ...+++|++|++..|++..++. .+..+++
T Consensus 248 L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~n 327 (505)
T KOG3207|consen 248 LQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLEN 327 (505)
T ss_pred HhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccch
Confidence 555566655544444 345566666666666666664 2332 2345667777777776655542 3445566
Q ss_pred CCEEEccCCCCCC
Q 001348 780 LKSLDLSCCNMLQ 792 (1094)
Q Consensus 780 L~~L~L~~~~~l~ 792 (1094)
|+.|.+..|++..
T Consensus 328 lk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 328 LKHLRITLNYLNK 340 (505)
T ss_pred hhhhhcccccccc
Confidence 6666666665543
No 39
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=3.4e-10 Score=123.39 Aligned_cols=200 Identities=17% Similarity=0.134 Sum_probs=119.1
Q ss_pred CccEEEeccCCCCccc--cccccccccceeecccccccccch--hhhhcCCcccEEeccCCcccCccch-hhcccCccce
Q 001348 569 NVRELYLRGTPIEYVP--SSIDCLAKLEYLDLGHCTILESIS--TSICKLKSLLKLCLDNCSKLESFPE-ILEKMGCLED 643 (1094)
Q Consensus 569 ~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~L~~~~~~~~lp--~~i~~l~~L~~L~L~~~~~~~~~p~-~l~~l~~L~~ 643 (1094)
+|+.+.|.++.+...+ .-...|++++.|||++|-+..--| .-...|++|+.|+|+.|.+.-.... .-..+++|+.
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~ 201 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQ 201 (505)
T ss_pred hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhhe
Confidence 4455555555544443 234556666666666654433211 2234466666666666544322111 1124456666
Q ss_pred eeccCcccc--cccchhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccCC--ccccCCCCCcEEEccCC
Q 001348 644 IDLEGTAIT--ELPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQLP--SSITNLNELQVVWCSGC 719 (1094)
Q Consensus 644 L~L~~~~i~--~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p--~~l~~l~~L~~L~l~~~ 719 (1094)
|.|++|.++ ++...+..+++|..|+|.+|.....-.....-+..|++|+|++|.+-..+ ...+.++.|+.|+++.|
T Consensus 202 L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t 281 (505)
T KOG3207|consen 202 LVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST 281 (505)
T ss_pred EEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcccc
Confidence 666666665 34444555666777777666433322233344566777777777666554 45667777777777777
Q ss_pred CCC--CCCCC-----CCCCCCCCEEeCCCCCCCCCCc--cccCCCCCCeeecCCCCCc
Q 001348 720 RGL--ILPPS-----FSGLSYLTELDLSCCNLIEIPQ--DIGCLSLLRSLDLRKNNFE 768 (1094)
Q Consensus 720 ~~~--~lp~~-----l~~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~L~~n~l~ 768 (1094)
... ..|+. ...+++|+.|+++.|++.+++. .+..+++|+.|.+..|.++
T Consensus 282 gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 282 GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred CcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 643 23333 4578999999999999987654 3566788899988888776
No 40
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.92 E-value=5.1e-09 Score=118.70 Aligned_cols=272 Identities=14% Similarity=0.138 Sum_probs=150.8
Q ss_pred CCCCCCeeehhHHHHHHHhcccc---CCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHH
Q 001348 88 SSDFEGLIGLDARIERIKSLLCI---GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVH 164 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~ 164 (1094)
|...++|||++..++.+..++.. .....+.+.|+|++|+||||+|+.+++.+...+. ....... .. ...
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~----~~~~~~~-~~---~~~ 92 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR----ITSGPAL-EK---PGD 92 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE----EEecccc-cC---hHH
Confidence 66778999999999999888753 1234567889999999999999999998754321 1111100 00 011
Q ss_pred HHHHHHHhhhccCC-ccc-----CCCchHHHHHHhcCCeEEEEEecCCChHhHHHHhcCCCCCCCCceEEEEeCChhhhh
Q 001348 165 LRDRLLSQILDESI-RIE-----TPYIPHYIRERLQCMKVFIVLDDVNKFRQLEYLAGGLDRFGLGSRIIVTSRDKQVLE 238 (1094)
Q Consensus 165 l~~~ll~~l~~~~~-~~~-----~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~ 238 (1094)
...++..+..... -.+ .....+.+...+.+.+..+|+|+..+..++... ..+.+-|..|||...+..
T Consensus 93 -l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~------l~~~~li~at~~~~~l~~ 165 (328)
T PRK00080 93 -LAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLD------LPPFTLIGATTRAGLLTS 165 (328)
T ss_pred -HHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeec------CCCceEEeecCCcccCCH
Confidence 1112221110000 000 000122233333344444444443332222110 012345666777554433
Q ss_pred hc--CcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHHHHHhhhhcCCCHHHHHHHHHHhhc
Q 001348 239 KY--GVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAIKVLASFFHRKSKLDWEIALQNLKQ 316 (1094)
Q Consensus 239 ~~--~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg~~L~~~~~~~w~~~l~~l~~ 316 (1094)
.. .....++++.++.++..+++.+.+...... --.+.+..|++.|+|.|-.+..+...+. .|...- .-..
T Consensus 166 ~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~--~~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~~-~~~~ 237 (328)
T PRK00080 166 PLRDRFGIVQRLEFYTVEELEKIVKRSARILGVE--IDEEGALEIARRSRGTPRIANRLLRRVR-----DFAQVK-GDGV 237 (328)
T ss_pred HHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHcCCCchHHHHHHHHHH-----HHHHHc-CCCC
Confidence 22 123578999999999999999887543222 2235678999999999965555544321 111110 0000
Q ss_pred CCC---ccHHHHHHHhhhcccHHhhhhhc-ccccccC-CcCHHHHHHHHhC-CCccccchh-hhhccCceeEe
Q 001348 317 ISG---PEILAVLKISYDELNWEAKNLFL-DIACFFK-GEDINFVTLILDN-HYSVHYGLS-VLVDKSLVRIS 382 (1094)
Q Consensus 317 ~~~---~~i~~~L~~sy~~L~~~~k~~fl-~~a~f~~-~~~~~~~~~il~~-~~~~~~~l~-~L~~~sLi~~~ 382 (1094)
... ....+.+...+..|++..+..+. .+..|.. ....+.+...+.. ...++..++ .|++.+||...
T Consensus 238 I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~~~ 310 (328)
T PRK00080 238 ITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFIQRT 310 (328)
T ss_pred CCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHcCCcccC
Confidence 111 12234456667788888888775 5555554 3556667666655 344555677 89999999643
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.92 E-value=1.8e-10 Score=119.00 Aligned_cols=221 Identities=21% Similarity=0.170 Sum_probs=145.5
Q ss_pred EeccCCCCCcccCCccCCccEEEeccCCCCccccccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCcc
Q 001348 552 LNFSYCVNFKEFPQISGNVRELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESF 631 (1094)
Q Consensus 552 L~Ls~~~~l~~~p~~~~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~ 631 (1094)
++-.+-..+..+-++...|.+|..++..- | |+. .|-+...+|-.+.-+++|+.+.++.|.-- .+
T Consensus 166 ~~~~~k~d~~hildf~~~l~~l~vs~~~~---p--~~~----------sni~~~~l~f~l~~f~~l~~~~~s~~~~~-~i 229 (490)
T KOG1259|consen 166 LDRGGKYDFSHVLDFCTQLVALVVTPVKD---P--IDR----------SNIIPNRLSFNLNAFRNLKTLKFSALSTE-NI 229 (490)
T ss_pred cCCCCccchHHHHHhhhheeEEEecCCCC---C--Ccc----------ccccccccccchHHhhhhheeeeeccchh-he
Confidence 33333334455555666778887776421 1 110 11112223333444667777777776532 22
Q ss_pred chhhcccCccceeeccCcccccccchhhccCCCcEEecCC-CCCCCCCCccccCCCcccEEecCCccCccCCccccCCCC
Q 001348 632 PEILEKMGCLEDIDLEGTAITELPSSIEYLGGLTTLNLTG-CSKLDNLPENLGNLKSLKMLCANESAISQLPSSITNLNE 710 (1094)
Q Consensus 632 p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~-~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p~~l~~l~~ 710 (1094)
-.....-+.|+++...++.+...|.-+ ....+..+.-+. ....|..-..+...+.|++|++++|.|+.+.+++.-++.
T Consensus 230 ~~~~~~kptl~t~~v~~s~~~~~~~l~-pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pk 308 (490)
T KOG1259|consen 230 VDIELLKPTLQTICVHNTTIQDVPSLL-PETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPK 308 (490)
T ss_pred eceeecCchhheeeeeccccccccccc-chhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccc
Confidence 222223356777777766655443211 111111111111 011223333444557899999999999999999999999
Q ss_pred CcEEEccCCCCCCCCCCCCCCCCCCEEeCCCCCCCCCCccccCCCCCCeeecCCCCCcccchhhcCCCCCCEEEccCCCC
Q 001348 711 LQVVWCSGCRGLILPPSFSGLSYLTELDLSCCNLIEIPQDIGCLSLLRSLDLRKNNFEYLPASMKHLSKLKSLDLSCCNM 790 (1094)
Q Consensus 711 L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~~~~ 790 (1094)
++.|+++.|....+.. +..+++|+.||||+|.++++..+-..+-+.+.|.|++|.+.++. ++..+-+|..||+++|++
T Consensus 309 ir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LS-GL~KLYSLvnLDl~~N~I 386 (490)
T KOG1259|consen 309 LRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLS-GLRKLYSLVNLDLSSNQI 386 (490)
T ss_pred eeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhh-hhHhhhhheeccccccch
Confidence 9999999999877766 88899999999999999988777777889999999999999887 688999999999999985
Q ss_pred C
Q 001348 791 L 791 (1094)
Q Consensus 791 l 791 (1094)
-
T Consensus 387 e 387 (490)
T KOG1259|consen 387 E 387 (490)
T ss_pred h
Confidence 3
No 42
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.86 E-value=7.5e-08 Score=106.35 Aligned_cols=178 Identities=16% Similarity=0.121 Sum_probs=105.2
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHH--
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRER-- 192 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~-- 192 (1094)
..++.|+|++|+||||+|+.+++.....=-..+++... . .+..++...++..+...............+.+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~-----~-~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNT-----R-VDAEDLLRMVAADFGLETEGRDKAALLRELEDFLI 116 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCC-----C-CCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 45899999999999999999998765320111222211 1 334566666666553321111111112233322
Q ss_pred ---hcCCeEEEEEecCCChH--hHHHHhcCCC---CCCCCceEEEEeCChhhhhhc----------CcCeEEEccCCCHH
Q 001348 193 ---LQCMKVFIVLDDVNKFR--QLEYLAGGLD---RFGLGSRIIVTSRDKQVLEKY----------GVDHIYEVEELNNI 254 (1094)
Q Consensus 193 ---L~~kr~LlVLDdv~~~~--~~~~l~~~~~---~~~~gsrIiiTTR~~~v~~~~----------~~~~~~~l~~L~~~ 254 (1094)
..++++++|+||++... .++.+..-.. .......|++|.... ..... .....+++++++.+
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~ 195 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDRE 195 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHH
Confidence 26788999999997753 3444432111 112223455555432 21111 12356889999999
Q ss_pred HHHHHHHhhcccCCC--CCchHHHHHHHHHHHhCCCchHHHHHhhhh
Q 001348 255 EALELFCKYAFRQNH--HPQDLMVISGRVVDYARGNPLAIKVLASFF 299 (1094)
Q Consensus 255 ea~~Lf~~~af~~~~--~~~~~~~~~~~i~~~~~GlPLal~~lg~~L 299 (1094)
|..+++...+..... ...-..+..+.|++.++|.|..+..++..+
T Consensus 196 e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 196 ETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999998877632211 112234678899999999999999988775
No 43
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.84 E-value=2.4e-10 Score=121.43 Aligned_cols=221 Identities=18% Similarity=0.178 Sum_probs=137.6
Q ss_pred CccEEEeccCCCC-----ccccccccccccceeecccccccc----cch-------hhhhcCCcccEEeccCCcccCccc
Q 001348 569 NVRELYLRGTPIE-----YVPSSIDCLAKLEYLDLGHCTILE----SIS-------TSICKLKSLLKLCLDNCSKLESFP 632 (1094)
Q Consensus 569 ~L~~L~L~~~~l~-----~lp~~i~~L~~L~~L~L~~~~~~~----~lp-------~~i~~l~~L~~L~L~~~~~~~~~p 632 (1094)
.+++|+|+||.+. .+-..+.+.+.|+..++++- +++ .+| ..+-..++|++|+||+|-+-...+
T Consensus 31 s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 31 SLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred ceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 4566666666554 12334455556666666642 122 122 223345577777777766554443
Q ss_pred hh----hcccCccceeeccCccccccc--------------chhhccCCCcEEecCCCCCCCC----CCccccCCCcccE
Q 001348 633 EI----LEKMGCLEDIDLEGTAITELP--------------SSIEYLGGLTTLNLTGCSKLDN----LPENLGNLKSLKM 690 (1094)
Q Consensus 633 ~~----l~~l~~L~~L~L~~~~i~~lp--------------~~l~~l~~L~~L~L~~~~~~~~----lp~~l~~l~~L~~ 690 (1094)
.. +..+..|++|.|.+|.+.... .-+++-+.|+++....|..-.. +...+...+.|+.
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~lee 189 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEE 189 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccce
Confidence 33 445667777777777665221 1234456777777776554321 2234566678888
Q ss_pred EecCCccCcc-----CCccccCCCCCcEEEccCCCCC-----CCCCCCCCCCCCCEEeCCCCCCCC-----CCccc-cCC
Q 001348 691 LCANESAISQ-----LPSSITNLNELQVVWCSGCRGL-----ILPPSFSGLSYLTELDLSCCNLIE-----IPQDI-GCL 754 (1094)
Q Consensus 691 L~l~~~~i~~-----~p~~l~~l~~L~~L~l~~~~~~-----~lp~~l~~l~~L~~L~Ls~n~l~~-----lp~~l-~~l 754 (1094)
+.+..|.|.. +...+..+++|++|+|..|..+ .+...++.+++|++|++++|.+.. +...+ ...
T Consensus 190 vr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~ 269 (382)
T KOG1909|consen 190 VRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESA 269 (382)
T ss_pred EEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccC
Confidence 8888887652 2446777888888888888632 233456677889999999998874 22222 347
Q ss_pred CCCCeeecCCCCCc-----ccchhhcCCCCCCEEEccCCCC
Q 001348 755 SLLRSLDLRKNNFE-----YLPASMKHLSKLKSLDLSCCNM 790 (1094)
Q Consensus 755 ~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~L~~~~~ 790 (1094)
|+|+.|.+.+|.++ .+-.++...|.|..|+|++|.+
T Consensus 270 p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 270 PSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred CCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 88999999999887 2344566688889999998876
No 44
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.83 E-value=2.9e-08 Score=124.56 Aligned_cols=326 Identities=14% Similarity=0.203 Sum_probs=191.7
Q ss_pred CeeehhHHHHHHHhccccC-CCCeEEEEEEecCCCchhhHHHHHHHHHhcc--------cc-------ceEEeeechhhh
Q 001348 93 GLIGLDARIERIKSLLCIG-LPNIQIMGIWGMGGIGKTTIAGVLFNQISRK--------FE-------SKCFMANVREES 156 (1094)
Q Consensus 93 ~~vGr~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--------F~-------~~~~~~~~~~~~ 156 (1094)
.++||+.+++.|...+..- .+...++.+.|..|||||+|+++|...+.++ |+ ...|+..+|+..
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~ 80 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLM 80 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHH
Confidence 3789999999999988653 2456799999999999999999999976555 11 011222222211
Q ss_pred cc-----CCChHHHHHHHHHhhhccC-----------------Ccc-c--CCCc--------hHHHHHHh-cCCeEEEEE
Q 001348 157 EK-----GGGLVHLRDRLLSQILDES-----------------IRI-E--TPYI--------PHYIRERL-QCMKVFIVL 202 (1094)
Q Consensus 157 ~~-----~~~~~~l~~~ll~~l~~~~-----------------~~~-~--~~~~--------~~~l~~~L-~~kr~LlVL 202 (1094)
.. .........+++..+.... .+. + .... ...+.... +.|++++|+
T Consensus 81 ~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~l 160 (849)
T COG3899 81 GQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVL 160 (849)
T ss_pred HHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 10 0011122222222221111 000 0 0000 11122222 456999999
Q ss_pred ecC-CChH----hHHHHhcCCC--CC-CCCceEEEEeCCh--hhhhhcCcCeEEEccCCCHHHHHHHHHhhcccCCCCCc
Q 001348 203 DDV-NKFR----QLEYLAGGLD--RF-GLGSRIIVTSRDK--QVLEKYGVDHIYEVEELNNIEALELFCKYAFRQNHHPQ 272 (1094)
Q Consensus 203 Ddv-~~~~----~~~~l~~~~~--~~-~~gsrIiiTTR~~--~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~ 272 (1094)
||+ |-.. -++.++.... .+ ....-.+.|.+.. .+......-..+.+.+|+..+...+......... .
T Consensus 161 eDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~---~ 237 (849)
T COG3899 161 EDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK---L 237 (849)
T ss_pred ecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc---c
Confidence 999 3222 2444443332 00 0111223333333 1111222347899999999999999988764322 2
Q ss_pred hHHHHHHHHHHHhCCCchHHHHHhhhhcCC-------CHHHHHHHHHHhhcCCC-ccHHHHHHHhhhcccHHhhhhhccc
Q 001348 273 DLMVISGRVVDYARGNPLAIKVLASFFHRK-------SKLDWEIALQNLKQISG-PEILAVLKISYDELNWEAKNLFLDI 344 (1094)
Q Consensus 273 ~~~~~~~~i~~~~~GlPLal~~lg~~L~~~-------~~~~w~~~l~~l~~~~~-~~i~~~L~~sy~~L~~~~k~~fl~~ 344 (1094)
...+..+.|+++..|+|+-+..+-..+... +...|+.-..++..... +.+.+.+..-.+.||...|+++...
T Consensus 238 ~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~A 317 (849)
T COG3899 238 LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLKAA 317 (849)
T ss_pred ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 334567899999999999999999888763 34556665555544332 2356678999999999999999999
Q ss_pred ccccCCcCHHHHHHHHhC-CCccccchhhhhccCceeEeC---------C---EEEeeHHHHHHHHHHHhhcccCCCCcc
Q 001348 345 ACFFKGEDINFVTLILDN-HYSVHYGLSVLVDKSLVRISR---------N---KLEMHDLLQDMGREIVSQESEKEPGKR 411 (1094)
Q Consensus 345 a~f~~~~~~~~~~~il~~-~~~~~~~l~~L~~~sLi~~~~---------~---~~~mHdli~~~~~~i~~~e~~~~~~~~ 411 (1094)
||+.+.++.+.+..++.. ......++-.....++|.... . +-..||.+|+.+....-+.
T Consensus 318 A~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~~~-------- 389 (849)
T COG3899 318 ACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIPES-------- 389 (849)
T ss_pred HHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccCchh--------
Confidence 999999999988888765 333333333334444554311 1 1246777777666544332
Q ss_pred cccccchhhhhHhhccCC
Q 001348 412 SRLWYHEDIYHVLKKNKG 429 (1094)
Q Consensus 412 ~rl~~~~di~~vl~~~~~ 429 (1094)
.|...|..+...+..+..
T Consensus 390 ~rq~~H~~i~~lL~~~~~ 407 (849)
T COG3899 390 QRQYLHLRIGQLLEQNIP 407 (849)
T ss_pred hHHHHHHHHHHHHHHhCC
Confidence 244556666666665543
No 45
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.80 E-value=2.4e-09 Score=107.52 Aligned_cols=105 Identities=27% Similarity=0.329 Sum_probs=36.4
Q ss_pred cccEEecCCccCccCCcccc-CCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeCCCCCCCCCCccc-cCCCCCCeeecCC
Q 001348 687 SLKMLCANESAISQLPSSIT-NLNELQVVWCSGCRGLILPPSFSGLSYLTELDLSCCNLIEIPQDI-GCLSLLRSLDLRK 764 (1094)
Q Consensus 687 ~L~~L~l~~~~i~~~p~~l~-~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l-~~l~~L~~L~L~~ 764 (1094)
.+++|++.+|.|+.+. .++ .+.+|+.|++++|....+. .+..++.|++|++++|.++++...+ ..+|+|+.|+|++
T Consensus 20 ~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~ 97 (175)
T PF14580_consen 20 KLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSN 97 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TT
T ss_pred cccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcC
Confidence 3444444444444432 233 3455555555555555443 3666778888888888888876554 3578888888888
Q ss_pred CCCcccc--hhhcCCCCCCEEEccCCCCCCC
Q 001348 765 NNFEYLP--ASMKHLSKLKSLDLSCCNMLQS 793 (1094)
Q Consensus 765 n~l~~lp--~~l~~l~~L~~L~L~~~~~l~~ 793 (1094)
|++..+. ..+..+++|+.|+|.+|+....
T Consensus 98 N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 98 NKISDLNELEPLSSLPKLRVLSLEGNPVCEK 128 (175)
T ss_dssp S---SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred CcCCChHHhHHHHcCCCcceeeccCCcccch
Confidence 8877554 2466788888888888887643
No 46
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.77 E-value=5.5e-09 Score=104.97 Aligned_cols=137 Identities=26% Similarity=0.299 Sum_probs=53.8
Q ss_pred cCcccccccchhhccCCCcEEecCCCCCCCCCCcccc-CCCcccEEecCCccCccCCccccCCCCCcEEEccCCCCCCCC
Q 001348 647 EGTAITELPSSIEYLGGLTTLNLTGCSKLDNLPENLG-NLKSLKMLCANESAISQLPSSITNLNELQVVWCSGCRGLILP 725 (1094)
Q Consensus 647 ~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~-~l~~L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~~~~lp 725 (1094)
..+.|+..|. +.+..+++.|+|++|.+.. + +.++ .+.+|+.|++++|.|+.+. .+..+++|+.|++++|....+.
T Consensus 5 t~~~i~~~~~-~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~ 80 (175)
T PF14580_consen 5 TANMIEQIAQ-YNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSIS 80 (175)
T ss_dssp ----------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-C
T ss_pred cccccccccc-ccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccc
Confidence 3344555544 4556688999999987654 2 3555 5789999999999999884 6888999999999999988876
Q ss_pred CCC-CCCCCCCEEeCCCCCCCCCC--ccccCCCCCCeeecCCCCCcccch----hhcCCCCCCEEEccC
Q 001348 726 PSF-SGLSYLTELDLSCCNLIEIP--QDIGCLSLLRSLDLRKNNFEYLPA----SMKHLSKLKSLDLSC 787 (1094)
Q Consensus 726 ~~l-~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~L~~n~l~~lp~----~l~~l~~L~~L~L~~ 787 (1094)
..+ ..+++|++|+|++|++.++- ..+..+++|+.|+|.+|.++..+. .+..+|+|+.||-..
T Consensus 81 ~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 81 EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 544 36899999999999988653 346788999999999998886553 456788888887643
No 47
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.76 E-value=6.6e-08 Score=105.51 Aligned_cols=173 Identities=17% Similarity=0.289 Sum_probs=106.0
Q ss_pred CCCCCCeeehhHHHH---HHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHH
Q 001348 88 SSDFEGLIGLDARIE---RIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVH 164 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~---~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~ 164 (1094)
|...+++||.+.-+. -|.+++ +.+.+.-+..||++|+||||||+.++......|...-=+ ..++.+
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v--~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv---------~~gvkd 88 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAV--EAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV---------TSGVKD 88 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHH--hcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc---------cccHHH
Confidence 444455555554331 222223 234567777999999999999999999877766432111 145555
Q ss_pred HHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCC--ChHhHHHHhcCCCCCCCCceEEE--EeCChhhh---
Q 001348 165 LRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVN--KFRQLEYLAGGLDRFGLGSRIIV--TSRDKQVL--- 237 (1094)
Q Consensus 165 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~--~~~~~~~l~~~~~~~~~gsrIii--TTR~~~v~--- 237 (1094)
+.+.+ .+.-+.+..+++.+|++|.|. +..|-+.|++.. ..|.-|+| ||-++...
T Consensus 89 lr~i~----------------e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~ 149 (436)
T COG2256 89 LREII----------------EEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNP 149 (436)
T ss_pred HHHHH----------------HHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecH
Confidence 54432 111233445899999999994 445666766553 45777776 66666431
Q ss_pred hhcCcCeEEEccCCCHHHHHHHHHhhcccCCCCCc-----hHHHHHHHHHHHhCCCch
Q 001348 238 EKYGVDHIYEVEELNNIEALELFCKYAFRQNHHPQ-----DLMVISGRVVDYARGNPL 290 (1094)
Q Consensus 238 ~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~-----~~~~~~~~i~~~~~GlPL 290 (1094)
....-..++++++|+.++-.+++.+.+-.....-. --.+....+++.++|---
T Consensus 150 ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 150 ALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred HHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 11234579999999999999999984432221111 123355667778777543
No 48
>PRK06893 DNA replication initiation factor; Validated
Probab=98.69 E-value=1.3e-07 Score=101.21 Aligned_cols=149 Identities=13% Similarity=0.228 Sum_probs=91.1
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhc
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQ 194 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 194 (1094)
.+.+.|||++|+|||+||+++++.+..+.....|+..... ..... .+.+.++
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~--------~~~~~--------------------~~~~~~~ 90 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS--------QYFSP--------------------AVLENLE 90 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh--------hhhhH--------------------HHHhhcc
Confidence 3578999999999999999999987666555667653110 00000 1111122
Q ss_pred CCeEEEEEecCCCh---HhHH-HHhcCCCCC-CCCceEEEEeCCh----------hhhhhcCcCeEEEccCCCHHHHHHH
Q 001348 195 CMKVFIVLDDVNKF---RQLE-YLAGGLDRF-GLGSRIIVTSRDK----------QVLEKYGVDHIYEVEELNNIEALEL 259 (1094)
Q Consensus 195 ~kr~LlVLDdv~~~---~~~~-~l~~~~~~~-~~gsrIiiTTR~~----------~v~~~~~~~~~~~l~~L~~~ea~~L 259 (1094)
+.-+|||||++.. .+|+ .+...+... ..|..+||+|.+. .+...++....++++.++.++.+++
T Consensus 91 -~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~i 169 (229)
T PRK06893 91 -QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIV 169 (229)
T ss_pred -cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHH
Confidence 2348999999763 3343 222222211 2356665555443 4445555567899999999999999
Q ss_pred HHhhcccCCCCCchHHHHHHHHHHHhCCCchHHHH
Q 001348 260 FCKYAFRQNHHPQDLMVISGRVVDYARGNPLAIKV 294 (1094)
Q Consensus 260 f~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 294 (1094)
+.+.++..... --.++..-|++++.|..-++..
T Consensus 170 L~~~a~~~~l~--l~~~v~~~L~~~~~~d~r~l~~ 202 (229)
T PRK06893 170 LQRNAYQRGIE--LSDEVANFLLKRLDRDMHTLFD 202 (229)
T ss_pred HHHHHHHcCCC--CCHHHHHHHHHhccCCHHHHHH
Confidence 99988644321 1234556677777766554433
No 49
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.63 E-value=1e-06 Score=104.73 Aligned_cols=292 Identities=15% Similarity=0.167 Sum_probs=178.8
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHH
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRD 167 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~ 167 (1094)
|..+...|-|..-++.+... .+.|.+.|..++|.|||||+.+... ....=..+.|+....+. .+......
T Consensus 15 P~~~~~~v~R~rL~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlslde~d----ndp~rF~~ 84 (894)
T COG2909 15 PVRPDNYVVRPRLLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLDESD----NDPARFLS 84 (894)
T ss_pred CCCcccccccHHHHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecCCcc----CCHHHHHH
Confidence 56677788888766666553 4689999999999999999999987 33444567888754332 44456666
Q ss_pred HHHHhhhccCCccc---------CCCc-----hHHHHHHh--cCCeEEEEEecCCC---h---HhHHHHhcCCCCCCCCc
Q 001348 168 RLLSQILDESIRIE---------TPYI-----PHYIRERL--QCMKVFIVLDDVNK---F---RQLEYLAGGLDRFGLGS 225 (1094)
Q Consensus 168 ~ll~~l~~~~~~~~---------~~~~-----~~~l~~~L--~~kr~LlVLDdv~~---~---~~~~~l~~~~~~~~~gs 225 (1094)
.++..+..-..... .... ...+...+ ..++..+||||..- . ..++.+... ..++-
T Consensus 85 yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~---~P~~l 161 (894)
T COG2909 85 YLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKH---APENL 161 (894)
T ss_pred HHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHh---CCCCe
Confidence 66666542211110 1111 22222222 24689999999732 2 224555544 34678
Q ss_pred eEEEEeCChhhhhh---cCcCeEEEcc----CCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHHHHHhhh
Q 001348 226 RIIVTSRDKQVLEK---YGVDHIYEVE----ELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAIKVLASF 298 (1094)
Q Consensus 226 rIiiTTR~~~v~~~---~~~~~~~~l~----~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg~~ 298 (1094)
..|||||.+.-+.. --.+...++. .|+.+|+.++|...... + -...-++.+.++..|-+-|+..++=.
T Consensus 162 ~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l---~--Ld~~~~~~L~~~teGW~~al~L~aLa 236 (894)
T COG2909 162 TLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSL---P--LDAADLKALYDRTEGWAAALQLIALA 236 (894)
T ss_pred EEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCC---C--CChHHHHHHHhhcccHHHHHHHHHHH
Confidence 89999998743211 1112333433 68999999999876521 1 12234578899999999999888877
Q ss_pred hcCC-CHHHHHHHHHHhhcCCCccHHH-HHHHhhhcccHHhhhhhcccccccCCcCHHHHHHHHhCCCccccchhhhhcc
Q 001348 299 FHRK-SKLDWEIALQNLKQISGPEILA-VLKISYDELNWEAKNLFLDIACFFKGEDINFVTLILDNHYSVHYGLSVLVDK 376 (1094)
Q Consensus 299 L~~~-~~~~w~~~l~~l~~~~~~~i~~-~L~~sy~~L~~~~k~~fl~~a~f~~~~~~~~~~~il~~~~~~~~~l~~L~~~ 376 (1094)
+++. +.+.- +..+... ...|.+ ...--++.||+++|..++-+|++..- .-+-...+. +.-....-++.|.++
T Consensus 237 ~~~~~~~~q~---~~~LsG~-~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f-~~eL~~~Lt-g~~ng~amLe~L~~~ 310 (894)
T COG2909 237 LRNNTSAEQS---LRGLSGA-ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF-NDELCNALT-GEENGQAMLEELERR 310 (894)
T ss_pred ccCCCcHHHH---hhhccch-HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh-hHHHHHHHh-cCCcHHHHHHHHHhC
Confidence 7733 32221 1111111 111222 12334688999999999999987431 111111111 112233347889999
Q ss_pred CceeEe----CCEEEeeHHHHHHHHHHHhhc
Q 001348 377 SLVRIS----RNKLEMHDLLQDMGREIVSQE 403 (1094)
Q Consensus 377 sLi~~~----~~~~~mHdli~~~~~~i~~~e 403 (1094)
+|+-+. +++|+.|.++.++.+.-.+.+
T Consensus 311 gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~ 341 (894)
T COG2909 311 GLFLQRLDDEGQWFRYHHLFAEFLRQRLQRE 341 (894)
T ss_pred CCceeeecCCCceeehhHHHHHHHHhhhccc
Confidence 988754 679999999999998766554
No 50
>PTZ00202 tuzin; Provisional
Probab=98.62 E-value=3.7e-06 Score=93.65 Aligned_cols=208 Identities=14% Similarity=0.186 Sum_probs=129.0
Q ss_pred HHHHHHHHHH-------------HhhccCCCCCCCchhHH--HHHHHHHHHHhcccc-----cccCCCCCCeeehhHHHH
Q 001348 43 VQKWRAVLTE-------------ASNLSGWDSKKIRPEAK--LVDEIVKDILKKLNY-----FSVSSDFEGLIGLDARIE 102 (1094)
Q Consensus 43 ~~~w~~al~~-------------~a~~~g~~~~~~~~e~~--~i~~i~~~v~~~l~~-----~~~~~~~~~~vGr~~~~~ 102 (1094)
-..||-++++ ++...||.+++++.+.. ..+-.++...+.+++ +..|.+...||||+.++.
T Consensus 193 erd~RY~l~KYsG~vSa~~a~lgv~~vF~wn~r~y~rqQR~~Ql~~Av~tL~~~~~~~~~~~~~lPa~~~~FVGReaEla 272 (550)
T PTZ00202 193 ERDFRYVLTKYSGVVSASVALLGVASVFGWNFKNYRTQQRSYQLKVAVSTLTQPLNPRPSTLQSAPAVIRQFVSREAEES 272 (550)
T ss_pred hhhhhhhHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcccCCCcccccCCCCCccCCCCcHHHHH
Confidence 3467766665 66667888888765543 233444555555433 233777889999999999
Q ss_pred HHHhccccCC-CCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHHHHHhhhccCCccc
Q 001348 103 RIKSLLCIGL-PNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDRLLSQILDESIRIE 181 (1094)
Q Consensus 103 ~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~ 181 (1094)
+|...|...+ ...+++.|.|++|+|||||++.+..... ..+++.+.+ +..++++.++.++...... .
T Consensus 273 ~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNpr-------g~eElLr~LL~ALGV~p~~-~ 340 (550)
T PTZ00202 273 WVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDVR-------GTEDTLRSVVKALGVPNVE-A 340 (550)
T ss_pred HHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECCC-------CHHHHHHHHHHHcCCCCcc-c
Confidence 9999996433 3467999999999999999999997653 336666553 4478888999888752211 1
Q ss_pred CCCchHHHHHHh-----c-CCeEEEEEe--cCCChHh-HHHHhcCCCCCCCCceEEEEeCChhhhhh---cCcCeEEEcc
Q 001348 182 TPYIPHYIRERL-----Q-CMKVFIVLD--DVNKFRQ-LEYLAGGLDRFGLGSRIIVTSRDKQVLEK---YGVDHIYEVE 249 (1094)
Q Consensus 182 ~~~~~~~l~~~L-----~-~kr~LlVLD--dv~~~~~-~~~l~~~~~~~~~gsrIiiTTR~~~v~~~---~~~~~~~~l~ 249 (1094)
..+..+.|.+.+ . +++.+||+- +-.+... ..+.. .+.....-|.|++----+.+... ..--..|.++
T Consensus 341 k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v-~la~drr~ch~v~evpleslt~~~~~lprldf~~vp 419 (550)
T PTZ00202 341 CGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVV-ALACDRRLCHVVIEVPLESLTIANTLLPRLDFYLVP 419 (550)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHH-HHHccchhheeeeeehHhhcchhcccCccceeEecC
Confidence 112234444433 3 677777764 2222222 11111 11112345677775554433211 1123689999
Q ss_pred CCCHHHHHHHHHhh
Q 001348 250 ELNNIEALELFCKY 263 (1094)
Q Consensus 250 ~L~~~ea~~Lf~~~ 263 (1094)
.++.++|.++-...
T Consensus 420 ~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 420 NFSRSQAFAYTQHA 433 (550)
T ss_pred CCCHHHHHHHHhhc
Confidence 99999998876654
No 51
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.56 E-value=6.7e-07 Score=104.53 Aligned_cols=180 Identities=17% Similarity=0.306 Sum_probs=109.4
Q ss_pred CCCCCCeeehhHHHHH---HHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHH
Q 001348 88 SSDFEGLIGLDARIER---IKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVH 164 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~ 164 (1094)
|...+++||.+..+.+ +.+++.. .....+.|+|++|+||||+|+.+++.....|.. +.... .+...
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~~--~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~---l~a~~------~~~~~ 76 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIEA--GRLSSMILWGPPGTGKTTLARIIAGATDAPFEA---LSAVT------SGVKD 76 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHHc--CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE---Eeccc------ccHHH
Confidence 5667789999888766 7777643 345678899999999999999999976554421 11110 12222
Q ss_pred HHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCCh--HhHHHHhcCCCCCCCCceEEE--EeCChh--hhh
Q 001348 165 LRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKF--RQLEYLAGGLDRFGLGSRIIV--TSRDKQ--VLE 238 (1094)
Q Consensus 165 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIii--TTR~~~--v~~ 238 (1094)
+. .++.... .....+++.+|++|+++.. .+.+.|..... .|..++| ||.+.. +..
T Consensus 77 ir-~ii~~~~---------------~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~ 137 (413)
T PRK13342 77 LR-EVIEEAR---------------QRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNP 137 (413)
T ss_pred HH-HHHHHHH---------------HhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccH
Confidence 21 1221110 0112457889999999754 45556655443 2455555 344332 111
Q ss_pred -hcCcCeEEEccCCCHHHHHHHHHhhcccCCCCC-chHHHHHHHHHHHhCCCchHHHHHhh
Q 001348 239 -KYGVDHIYEVEELNNIEALELFCKYAFRQNHHP-QDLMVISGRVVDYARGNPLAIKVLAS 297 (1094)
Q Consensus 239 -~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~-~~~~~~~~~i~~~~~GlPLal~~lg~ 297 (1094)
.......++++.++.++..+++.+.+....... .-..+..+.+++.++|.+..+..+..
T Consensus 138 aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 138 ALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred HHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 122336899999999999999988653211111 22245667889999999876654433
No 52
>PLN03150 hypothetical protein; Provisional
Probab=98.53 E-value=1.4e-07 Score=115.81 Aligned_cols=105 Identities=27% Similarity=0.338 Sum_probs=67.4
Q ss_pred cceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccCcccc-cccchhhccCCCcEEecCC
Q 001348 593 LEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEGTAIT-ELPSSIEYLGGLTTLNLTG 671 (1094)
Q Consensus 593 L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~-~lp~~l~~l~~L~~L~L~~ 671 (1094)
++.|+|++|.+.+.+|..++++++|+.|+|++|.+.+.+|..++++++|+.|+|++|.++ .+|..++++++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 555666666666666666666666666666666666666666666666666666666666 5666666666666666666
Q ss_pred CCCCCCCCccccCC-CcccEEecCCcc
Q 001348 672 CSKLDNLPENLGNL-KSLKMLCANESA 697 (1094)
Q Consensus 672 ~~~~~~lp~~l~~l-~~L~~L~l~~~~ 697 (1094)
|.+.+.+|..++.+ .++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 66666666666543 345566666653
No 53
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.53 E-value=1.9e-08 Score=118.02 Aligned_cols=192 Identities=28% Similarity=0.309 Sum_probs=100.7
Q ss_pred CccEEEeccCCCCccccccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccC
Q 001348 569 NVRELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEG 648 (1094)
Q Consensus 569 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~ 648 (1094)
+|+.|++.+|.|..+...+..+++|++|+|++|.+...-+ +..++.|+.|++++|.+... ..+..+++|+.+++++
T Consensus 96 ~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~ 171 (414)
T KOG0531|consen 96 SLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSY 171 (414)
T ss_pred ceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhc--cCCccchhhhcccCCc
Confidence 5667777777777775556777777777777777654432 45566677777777655432 2334466677777777
Q ss_pred cccccccch-hhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccCCccccCCCCCcEEEccCCCCCCCCCC
Q 001348 649 TAITELPSS-IEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQLPSSITNLNELQVVWCSGCRGLILPPS 727 (1094)
Q Consensus 649 ~~i~~lp~~-l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~~~~lp~~ 727 (1094)
|.+..+... +..+.+|+.+.+.+|.+... ..+..+..+..+.+..|.++.+- .+..+..
T Consensus 172 n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~-~l~~~~~----------------- 231 (414)
T KOG0531|consen 172 NRIVDIENDELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLE-GLNELVM----------------- 231 (414)
T ss_pred chhhhhhhhhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceecc-Ccccchh-----------------
Confidence 777666543 45566666666666543221 12223333333344555444331 1111111
Q ss_pred CCCCCCCCEEeCCCCCCCCCCccccCCCCCCeeecCCCCCcccchhhcCCCCCCEEEccCCC
Q 001348 728 FSGLSYLTELDLSCCNLIEIPQDIGCLSLLRSLDLRKNNFEYLPASMKHLSKLKSLDLSCCN 789 (1094)
Q Consensus 728 l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~~~ 789 (1094)
..|+.+++++|.+..++..+..+..+..|++.+|++..+. .+...+.+..+.+..++
T Consensus 232 ----~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~-~~~~~~~~~~~~~~~~~ 288 (414)
T KOG0531|consen 232 ----LHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLE-GLERLPKLSELWLNDNK 288 (414)
T ss_pred ----HHHHHHhcccCccccccccccccccccccchhhccccccc-cccccchHHHhccCcch
Confidence 0245555555555544444444455555555555444333 23333444444444444
No 54
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.52 E-value=2e-06 Score=102.85 Aligned_cols=242 Identities=14% Similarity=0.094 Sum_probs=128.1
Q ss_pred CCCCCCeeehhHHHHHHHhcccc---CCCCeEEEEEEecCCCchhhHHHHHHHHHhcc-----cc--ceEEeeechhhhc
Q 001348 88 SSDFEGLIGLDARIERIKSLLCI---GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRK-----FE--SKCFMANVREESE 157 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----F~--~~~~~~~~~~~~~ 157 (1094)
...++.++|||.++++|...|.. +.....++.|+|++|.|||++++.|.+++... .+ ..+++.+..-
T Consensus 751 DYVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~L--- 827 (1164)
T PTZ00112 751 DVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNV--- 827 (1164)
T ss_pred ccCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCcc---
Confidence 34567899999999999998864 22334677899999999999999999876432 12 1244443221
Q ss_pred cCCChHHHHHHHHHhhhccCCcccC-C-CchHHHHHHhc---CCeEEEEEecCCChH--hHHHHhcCCCCC-CCCceEEE
Q 001348 158 KGGGLVHLRDRLLSQILDESIRIET-P-YIPHYIRERLQ---CMKVFIVLDDVNKFR--QLEYLAGGLDRF-GLGSRIIV 229 (1094)
Q Consensus 158 ~~~~~~~l~~~ll~~l~~~~~~~~~-~-~~~~~l~~~L~---~kr~LlVLDdv~~~~--~~~~l~~~~~~~-~~gsrIii 229 (1094)
.....+...+..++......... . .....+.+.+. ....+||||+|+... +-+.|..-+.|. ..+++|+|
T Consensus 828 --stp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiL 905 (1164)
T PTZ00112 828 --VHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVL 905 (1164)
T ss_pred --CCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEE
Confidence 23445666666666443322111 0 11333333331 224589999997543 112222222221 24556554
Q ss_pred --EeCChhh--------hhhcCcCeEEEccCCCHHHHHHHHHhhcccC-CC-CCchHHHHHHHHHHHhCCCchHHHHHhh
Q 001348 230 --TSRDKQV--------LEKYGVDHIYEVEELNNIEALELFCKYAFRQ-NH-HPQDLMVISGRVVDYARGNPLAIKVLAS 297 (1094)
Q Consensus 230 --TTR~~~v--------~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~-~~-~~~~~~~~~~~i~~~~~GlPLal~~lg~ 297 (1094)
+|.+..+ ...++ ...+..++.+.++..+++..++-.. .. ..+.+.-+|+.++...|-.-.||.++-.
T Consensus 906 IGISNdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRr 984 (1164)
T PTZ00112 906 IAISNTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRK 984 (1164)
T ss_pred EEecCchhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHH
Confidence 3332221 11222 2346678999999999999887432 11 2223333444444333445556555544
Q ss_pred hhcCC-----CHHHHHHHHHHhhcCCCccHHHHHHHhhhcccHHhhhhhc
Q 001348 298 FFHRK-----SKLDWEIALQNLKQISGPEILAVLKISYDELNWEAKNLFL 342 (1094)
Q Consensus 298 ~L~~~-----~~~~w~~~l~~l~~~~~~~i~~~L~~sy~~L~~~~k~~fl 342 (1094)
+...+ ..+.-+.+..++... .+.-....||.+.|-.++
T Consensus 985 AgEikegskVT~eHVrkAleeiE~s-------rI~e~IktLPlHqKLVLl 1027 (1164)
T PTZ00112 985 AFENKRGQKIVPRDITEATNQLFDS-------PLTNAINYLPWPFKMFLT 1027 (1164)
T ss_pred HHhhcCCCccCHHHHHHHHHHHHhh-------hHHHHHHcCCHHHHHHHH
Confidence 43211 223333333333211 122334567777766554
No 55
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.52 E-value=1.6e-08 Score=107.93 Aligned_cols=205 Identities=19% Similarity=0.205 Sum_probs=127.9
Q ss_pred ccccccccceeeccccccccc----chhhhhcCCcccEEeccCCcccC----ccch-------hhcccCccceeeccCcc
Q 001348 586 SIDCLAKLEYLDLGHCTILES----ISTSICKLKSLLKLCLDNCSKLE----SFPE-------ILEKMGCLEDIDLEGTA 650 (1094)
Q Consensus 586 ~i~~L~~L~~L~L~~~~~~~~----lp~~i~~l~~L~~L~L~~~~~~~----~~p~-------~l~~l~~L~~L~L~~~~ 650 (1094)
.+..+..++.|+|++|.+... +...+.+.++|+..++++ -.++ .+|+ .+...++|++|+||.|.
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd-~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD-MFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh-hhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 445677899999999987543 334466678888888876 2332 2333 34456788888888887
Q ss_pred cc-----cccchhhccCCCcEEecCCCCCCCCCC-------------ccccCCCcccEEecCCccCccCC-----ccccC
Q 001348 651 IT-----ELPSSIEYLGGLTTLNLTGCSKLDNLP-------------ENLGNLKSLKMLCANESAISQLP-----SSITN 707 (1094)
Q Consensus 651 i~-----~lp~~l~~l~~L~~L~L~~~~~~~~lp-------------~~l~~l~~L~~L~l~~~~i~~~p-----~~l~~ 707 (1094)
+. .+-.-+.++..|++|.|.+|.+...-. .-.++-+.|+++....|.+..-+ ..+..
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~ 183 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQS 183 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHh
Confidence 76 222345667888888888876542211 12344566777777777665432 34555
Q ss_pred CCCCcEEEccCCCCC-----CCCCCCCCCCCCCEEeCCCCCCCC-----CCccccCCCCCCeeecCCCCCcc-----cch
Q 001348 708 LNELQVVWCSGCRGL-----ILPPSFSGLSYLTELDLSCCNLIE-----IPQDIGCLSLLRSLDLRKNNFEY-----LPA 772 (1094)
Q Consensus 708 l~~L~~L~l~~~~~~-----~lp~~l~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~L~~n~l~~-----lp~ 772 (1094)
.+.|+.+.+..|.+. .+...+..+++|+.|||.+|.++. +...+..+++|+.|++++|.++. +-.
T Consensus 184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~ 263 (382)
T KOG1909|consen 184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD 263 (382)
T ss_pred ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH
Confidence 667777777766532 122235567777777777776662 34445556677777777776662 222
Q ss_pred hh-cCCCCCCEEEccCCCCC
Q 001348 773 SM-KHLSKLKSLDLSCCNML 791 (1094)
Q Consensus 773 ~l-~~l~~L~~L~L~~~~~l 791 (1094)
.+ ...|+|+.|.|.+|.+.
T Consensus 264 al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 264 ALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred HHhccCCCCceeccCcchhH
Confidence 22 33677777777777654
No 56
>PLN03150 hypothetical protein; Provisional
Probab=98.48 E-value=2e-07 Score=114.30 Aligned_cols=105 Identities=27% Similarity=0.376 Sum_probs=87.3
Q ss_pred cccEEeccCCcccCccchhhcccCccceeeccCcccc-cccchhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecC
Q 001348 616 SLLKLCLDNCSKLESFPEILEKMGCLEDIDLEGTAIT-ELPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCAN 694 (1094)
Q Consensus 616 ~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~-~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~ 694 (1094)
.++.|+|++|.+.+.+|..+.++++|+.|+|++|.+. .+|..++.+++|+.|+|++|.+.+.+|..++++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4778888888888888888888889999999988887 788888888899999999888888888888888899999998
Q ss_pred CccCc-cCCccccCC-CCCcEEEccCCC
Q 001348 695 ESAIS-QLPSSITNL-NELQVVWCSGCR 720 (1094)
Q Consensus 695 ~~~i~-~~p~~l~~l-~~L~~L~l~~~~ 720 (1094)
+|.++ .+|..+..+ .++..+++.+|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 88887 677777653 466777777775
No 57
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.46 E-value=1.4e-07 Score=103.94 Aligned_cols=260 Identities=22% Similarity=0.206 Sum_probs=173.2
Q ss_pred CCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHH
Q 001348 113 PNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRER 192 (1094)
Q Consensus 113 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 192 (1094)
...|.+.++|.|||||||++-.+.. ++..|...+++.+.+...+. ..+.-.....+.-...+. ......+..+
T Consensus 12 ~~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~----~~v~~~~ag~~gl~~~~g--~~~~~~~~~~ 84 (414)
T COG3903 12 TALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDP----ALVFPTLAGALGLHVQPG--DSAVDTLVRR 84 (414)
T ss_pred hhhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCch----hHhHHHHHhhcccccccc--hHHHHHHHHH
Confidence 3568999999999999999999999 88899988887776665443 222222222222111110 0114567777
Q ss_pred hcCCeEEEEEecCCChH-hHHHHhcCCCCCCCCceEEEEeCChhhhhhcCcCeEEEccCCCHH-HHHHHHHhhcccCC--
Q 001348 193 LQCMKVFIVLDDVNKFR-QLEYLAGGLDRFGLGSRIIVTSRDKQVLEKYGVDHIYEVEELNNI-EALELFCKYAFRQN-- 268 (1094)
Q Consensus 193 L~~kr~LlVLDdv~~~~-~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~~~~l~~L~~~-ea~~Lf~~~af~~~-- 268 (1094)
..++|.++|+||-.+.. +-..+...+....+.-+|+.|+|+... +..+..+.++.|+.. ++.++|...+-...
T Consensus 85 ~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~ 161 (414)
T COG3903 85 IGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALS 161 (414)
T ss_pred HhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccc
Confidence 88899999999986553 223333333333455678899987533 335677888888776 78999887763211
Q ss_pred -CCCchHHHHHHHHHHHhCCCchHHHHHhhhhcCCCHHHHHHHHH----HhhcC------CCccHHHHHHHhhhcccHHh
Q 001348 269 -HHPQDLMVISGRVVDYARGNPLAIKVLASFFHRKSKLDWEIALQ----NLKQI------SGPEILAVLKISYDELNWEA 337 (1094)
Q Consensus 269 -~~~~~~~~~~~~i~~~~~GlPLal~~lg~~L~~~~~~~w~~~l~----~l~~~------~~~~i~~~L~~sy~~L~~~~ 337 (1094)
.-...-.....+|.+...|.|++|...++..+.-...+--..+. .++.. ........+..||.-|..-+
T Consensus 162 f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe 241 (414)
T COG3903 162 FWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWE 241 (414)
T ss_pred eeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHH
Confidence 11233445678999999999999999999888765544433332 23222 12356788999999999999
Q ss_pred hhhhcccccccCCcCHHHHHHHHhC-CC-----ccccchhhhhccCceeEe
Q 001348 338 KNLFLDIACFFKGEDINFVTLILDN-HY-----SVHYGLSVLVDKSLVRIS 382 (1094)
Q Consensus 338 k~~fl~~a~f~~~~~~~~~~~il~~-~~-----~~~~~l~~L~~~sLi~~~ 382 (1094)
+-.|-.++.|..+++.+.....-.. .+ .....+..+++++++...
T Consensus 242 ~~~~~rLa~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~ 292 (414)
T COG3903 242 RALFGRLAVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVAL 292 (414)
T ss_pred HHHhcchhhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhh
Confidence 9999999999888887754443332 22 233446778899988654
No 58
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.46 E-value=2.1e-08 Score=117.65 Aligned_cols=194 Identities=26% Similarity=0.298 Sum_probs=112.0
Q ss_pred CccEEEeccCCCCccccccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccC
Q 001348 569 NVRELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEG 648 (1094)
Q Consensus 569 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~ 648 (1094)
.++.+++..+.+..+-..+..+.+|..|++.+|.+.+... .+..+.+|++|++++|.+... ..+..++.|+.|++++
T Consensus 73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSG 149 (414)
T ss_pred hHHhhccchhhhhhhhcccccccceeeeeccccchhhccc-chhhhhcchheeccccccccc--cchhhccchhhheecc
Confidence 3444555555555543445556666666666665543222 134455555555555444332 1233344455555555
Q ss_pred cccccccchhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccCCcc-ccCCCCCcEEEccCCCCCCCCCC
Q 001348 649 TAITELPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQLPSS-ITNLNELQVVWCSGCRGLILPPS 727 (1094)
Q Consensus 649 ~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p~~-l~~l~~L~~L~l~~~~~~~lp~~ 727 (1094)
|.|+.+. .+..+.+|+.+++++|.+..+... +..+.+|+.+++.+|....+. .
T Consensus 150 N~i~~~~-------------------------~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~ 203 (414)
T KOG0531|consen 150 NLISDIS-------------------------GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE-G 203 (414)
T ss_pred Ccchhcc-------------------------CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhccc-c
Confidence 5444432 223355555666666665555332 355566666666666544332 2
Q ss_pred CCCCCCCCEEeCCCCCCCCCCccccCCCC--CCeeecCCCCCcccchhhcCCCCCCEEEccCCCCCC
Q 001348 728 FSGLSYLTELDLSCCNLIEIPQDIGCLSL--LRSLDLRKNNFEYLPASMKHLSKLKSLDLSCCNMLQ 792 (1094)
Q Consensus 728 l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~--L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~~~~l~ 792 (1094)
+..+..+..+++..|.++.+- .+..+.. |+.+++++|.+..++..+..+..+..|++.+|+...
T Consensus 204 ~~~~~~l~~~~l~~n~i~~~~-~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 204 LDLLKKLVLLSLLDNKISKLE-GLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISN 269 (414)
T ss_pred hHHHHHHHHhhcccccceecc-CcccchhHHHHHHhcccCccccccccccccccccccchhhccccc
Confidence 344445555678888877642 2233343 899999999999987788889999999999887543
No 59
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.45 E-value=2.3e-06 Score=91.73 Aligned_cols=174 Identities=15% Similarity=0.225 Sum_probs=101.4
Q ss_pred CCCCeee--hhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHH
Q 001348 90 DFEGLIG--LDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRD 167 (1094)
Q Consensus 90 ~~~~~vG--r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~ 167 (1094)
..++|++ .+..++++.+++.. ...+.|.|+|++|+|||+||++++++........+|+.+ ...... ..
T Consensus 13 ~~~~~~~~~~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~-~~~~~~-------~~ 82 (226)
T TIGR03420 13 TFDNFYAGGNAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPL-AELAQA-------DP 82 (226)
T ss_pred hhcCcCcCCcHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeH-HHHHHh-------HH
Confidence 3455652 44567778777542 345688999999999999999999976554444455542 211110 00
Q ss_pred HHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCChH---h-HHHHhcCCCC-CCCCceEEEEeCChh-------
Q 001348 168 RLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKFR---Q-LEYLAGGLDR-FGLGSRIIVTSRDKQ------- 235 (1094)
Q Consensus 168 ~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~---~-~~~l~~~~~~-~~~gsrIiiTTR~~~------- 235 (1094)
.+ ...+.+ .-+||+||++... . .+.+...+.. ...+.+||+||+...
T Consensus 83 ~~--------------------~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~ 141 (226)
T TIGR03420 83 EV--------------------LEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRL 141 (226)
T ss_pred HH--------------------Hhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCccc
Confidence 11 111222 2389999996542 1 2333322211 123457888887432
Q ss_pred --hhhhcCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHHHHHh
Q 001348 236 --VLEKYGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAIKVLA 296 (1094)
Q Consensus 236 --v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg 296 (1094)
+...+.....+++++++.++...++...+-..... --.+..+.+++.+.|.|..+..+-
T Consensus 142 ~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~--~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 142 PDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQ--LPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred HHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhccCCHHHHHHHH
Confidence 12222234689999999999999987755322111 122445677777888887765553
No 60
>PF13173 AAA_14: AAA domain
Probab=98.41 E-value=1.6e-06 Score=83.75 Aligned_cols=120 Identities=23% Similarity=0.192 Sum_probs=78.6
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhc
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQ 194 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 194 (1094)
-+++.|.|+.|+|||||+++++.+.. .-...+|+..... ........+ ..+.+.+...
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~---------~~~~~~~~~------------~~~~~~~~~~ 59 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDP---------RDRRLADPD------------LLEYFLELIK 59 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCH---------HHHHHhhhh------------hHHHHHHhhc
Confidence 36899999999999999999998765 2234555542111 110000000 1233344444
Q ss_pred CCeEEEEEecCCChHhHHHHhcCCCCCCCCceEEEEeCChhhhhh------cCcCeEEEccCCCHHHH
Q 001348 195 CMKVFIVLDDVNKFRQLEYLAGGLDRFGLGSRIIVTSRDKQVLEK------YGVDHIYEVEELNNIEA 256 (1094)
Q Consensus 195 ~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~------~~~~~~~~l~~L~~~ea 256 (1094)
.++.+++||++.....|......+...++..+|++|+.....+.. .|....+++.+|+-.|.
T Consensus 60 ~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 60 PGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 478899999998888877777666555567899999998876532 12335688999987764
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.41 E-value=6.8e-07 Score=100.46 Aligned_cols=134 Identities=22% Similarity=0.278 Sum_probs=74.4
Q ss_pred hhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCc-cCccCCccccCCCCCcEEEccCCC-CCCCCCCCCCCCCCC
Q 001348 658 IEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANES-AISQLPSSITNLNELQVVWCSGCR-GLILPPSFSGLSYLT 735 (1094)
Q Consensus 658 l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~-~i~~~p~~l~~l~~L~~L~l~~~~-~~~lp~~l~~l~~L~ 735 (1094)
+..+.+++.|++++| .+..+|. -..+|+.|.++++ .++.+|..+ ..+|+.|.+++|. ...+|. +|+
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccc
Confidence 455678888888887 4556662 2346788887764 455556544 2567777777763 334443 466
Q ss_pred EEeCCCCCCCCCCccccCCCCCCeeecCCCCCc---ccchhhcCCCCCCEEEccCCCCCCCCCccccccccccccc
Q 001348 736 ELDLSCCNLIEIPQDIGCLSLLRSLDLRKNNFE---YLPASMKHLSKLKSLDLSCCNMLQSLPELPLQLKFLQAKD 808 (1094)
Q Consensus 736 ~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~---~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~~~ 808 (1094)
.|+++.+.+..++. -.++|+.|.+.+++.. .+|.. -.++|++|++++|......+.+|.+|+.|.+..
T Consensus 116 ~L~L~~n~~~~L~~---LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~ 186 (426)
T PRK15386 116 SLEIKGSATDSIKN---VPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIILPEKLPESLQSITLHI 186 (426)
T ss_pred eEEeCCCCCccccc---CcchHhheeccccccccccccccc--cCCcccEEEecCCCcccCcccccccCcEEEecc
Confidence 66666554433211 1125666666443211 11210 124677777777775543334666677766654
No 62
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.38 E-value=1.2e-06 Score=100.78 Aligned_cols=173 Identities=20% Similarity=0.281 Sum_probs=101.6
Q ss_pred CCCCeeehhHHHHHHHhccccC-----------CCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhcc
Q 001348 90 DFEGLIGLDARIERIKSLLCIG-----------LPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEK 158 (1094)
Q Consensus 90 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 158 (1094)
..+++.|++..+++|.+.+... -...+-|.|+|++|+|||++|++++++....|-.. ..
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v-----~~----- 189 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRV-----VG----- 189 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEec-----ch-----
Confidence 3456899999999998876421 12356699999999999999999999876553211 10
Q ss_pred CCChHHHHHHHHHhhhccCCcccCCCchHHHHHH-hcCCeEEEEEecCCCh----------------HhHHHHhcCCCCC
Q 001348 159 GGGLVHLRDRLLSQILDESIRIETPYIPHYIRER-LQCMKVFIVLDDVNKF----------------RQLEYLAGGLDRF 221 (1094)
Q Consensus 159 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~----------------~~~~~l~~~~~~~ 221 (1094)
..+......+ . ......+.+. -.....+|+||+++.. ..+..+......+
T Consensus 190 ----~~l~~~~~g~----~-----~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~ 256 (364)
T TIGR01242 190 ----SELVRKYIGE----G-----ARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGF 256 (364)
T ss_pred ----HHHHHHhhhH----H-----HHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCC
Confidence 0111111000 0 0001111111 1235679999998653 1133333332222
Q ss_pred --CCCceEEEEeCChhhhh-----hcCcCeEEEccCCCHHHHHHHHHhhcccCCCCC-chHHHHHHHHHHHhCCCc
Q 001348 222 --GLGSRIIVTSRDKQVLE-----KYGVDHIYEVEELNNIEALELFCKYAFRQNHHP-QDLMVISGRVVDYARGNP 289 (1094)
Q Consensus 222 --~~gsrIiiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~-~~~~~~~~~i~~~~~GlP 289 (1094)
..+.+||.||....... ....+..++++..+.++..++|..++.+..... .++ ..+++.+.|..
T Consensus 257 ~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~----~~la~~t~g~s 328 (364)
T TIGR01242 257 DPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDL----EAIAKMTEGAS 328 (364)
T ss_pred CCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCH----HHHHHHcCCCC
Confidence 23667888887543322 123467899999999999999998875543322 233 45666676654
No 63
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.35 E-value=1.1e-05 Score=96.43 Aligned_cols=183 Identities=14% Similarity=0.155 Sum_probs=113.1
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhcc--c-------------------cce
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRK--F-------------------ESK 146 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--F-------------------~~~ 146 (1094)
|...+++||.+..++.|.+.+..+. -...+.++|..|+||||+|+.+.+.+-.. . ...
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dv 90 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDY 90 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceE
Confidence 7778899999999999999986432 24566799999999999999999865321 1 001
Q ss_pred EEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCChH--hHHHHhcCCCCCCCC
Q 001348 147 CFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKFR--QLEYLAGGLDRFGLG 224 (1094)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~g 224 (1094)
+.+.. ... .++.++ ++++.... .....++.-++|||+++... .+..|+..+......
T Consensus 91 iEIDA----as~-rgVDdI-ReLIe~a~---------------~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~ 149 (830)
T PRK07003 91 VEMDA----ASN-RGVDEM-AALLERAV---------------YAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPH 149 (830)
T ss_pred EEecc----ccc-ccHHHH-HHHHHHHH---------------hccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCC
Confidence 11100 000 111111 11111110 00112345578899997764 367776665555567
Q ss_pred ceEEEEeCChhhh-hh-cCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCc-hHHHH
Q 001348 225 SRIIVTSRDKQVL-EK-YGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNP-LAIKV 294 (1094)
Q Consensus 225 srIiiTTR~~~v~-~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlP-Lal~~ 294 (1094)
.++|+||++.+-. .. ..-...++++.++.++..+.+.+.+-..... --.+..+.|++.++|.. -|+..
T Consensus 150 v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~--id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA--FEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred eEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 8888888776432 22 2334789999999999999998876432221 12355678888998865 45444
No 64
>PRK04195 replication factor C large subunit; Provisional
Probab=98.34 E-value=1.6e-05 Score=95.00 Aligned_cols=215 Identities=13% Similarity=0.124 Sum_probs=122.6
Q ss_pred CCCCCCeeehhHHHHHHHhccccC--CCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHH
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIG--LPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHL 165 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l 165 (1094)
|...++++|.+..++++..++..- ....+.+.|+|++|+||||+|+++++++. |+.. .+ +... ......
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~~i-el-nasd-----~r~~~~ 80 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WEVI-EL-NASD-----QRTADV 80 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCEE-EE-cccc-----cccHHH
Confidence 666778999999999999988531 12268899999999999999999999763 2211 11 2111 111222
Q ss_pred HHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCChH------hHHHHhcCCCCCCCCceEEEEeCChhhh-h
Q 001348 166 RDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKFR------QLEYLAGGLDRFGLGSRIIVTSRDKQVL-E 238 (1094)
Q Consensus 166 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~------~~~~l~~~~~~~~~gsrIiiTTR~~~v~-~ 238 (1094)
.+.++....... .....++-+||+|+++... .+..+..... ..+..||+|+.+..-. .
T Consensus 81 i~~~i~~~~~~~-------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~ 145 (482)
T PRK04195 81 IERVAGEAATSG-------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSL 145 (482)
T ss_pred HHHHHHHhhccC-------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccch
Confidence 222322221110 0011367799999997642 2444443333 2344577776543211 1
Q ss_pred --hcCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHHHHHhhhhc-CC---CHHHHHHHHH
Q 001348 239 --KYGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAIKVLASFFH-RK---SKLDWEIALQ 312 (1094)
Q Consensus 239 --~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg~~L~-~~---~~~~w~~~l~ 312 (1094)
.......++++.++.++....+...+....... -.+....|++.++|-.-.+......+. ++ +.+..+...
T Consensus 146 k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i--~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~- 222 (482)
T PRK04195 146 RELRNACLMIEFKRLSTRSIVPVLKRICRKEGIEC--DDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLG- 222 (482)
T ss_pred hhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhh-
Confidence 112346789999999999988887764332222 235668888889887655443333332 22 222222221
Q ss_pred HhhcCCCccHHHHHHHhhh
Q 001348 313 NLKQISGPEILAVLKISYD 331 (1094)
Q Consensus 313 ~l~~~~~~~i~~~L~~sy~ 331 (1094)
.......+++++..-+.
T Consensus 223 --~~d~~~~if~~l~~i~~ 239 (482)
T PRK04195 223 --RRDREESIFDALDAVFK 239 (482)
T ss_pred --cCCCCCCHHHHHHHHHC
Confidence 13334556666665544
No 65
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.31 E-value=7.6e-06 Score=84.11 Aligned_cols=179 Identities=18% Similarity=0.213 Sum_probs=97.9
Q ss_pred CCCCCCeeehhHHHHHHHhcccc---CCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHH
Q 001348 88 SSDFEGLIGLDARIERIKSLLCI---GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVH 164 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~ 164 (1094)
|...++|||.+.-++++.-++.. ..+...-+.+||++|+||||||+.+++.....|. +.. . ..-+ ...+
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~s-g-~~i~---k~~d 91 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK---ITS-G-PAIE---KAGD 91 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE---EEE-C-CC-----SCHH
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE---ecc-c-hhhh---hHHH
Confidence 77889999999999887766542 2345678889999999999999999998877663 111 1 0001 1112
Q ss_pred HHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCCh--HhHHHHhcCCCC--------CCCCc---------
Q 001348 165 LRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKF--RQLEYLAGGLDR--------FGLGS--------- 225 (1094)
Q Consensus 165 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~--------~~~gs--------- 225 (1094)
+.. + ...++ ++-+|.+|.+... .+-+.|.+.... .+++.
T Consensus 92 l~~-i--------------------l~~l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 92 LAA-I--------------------LTNLK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp HHH-H--------------------HHT---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred HHH-H--------------------HHhcC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence 211 1 11122 3446677998554 333333332211 12222
Q ss_pred --eEEEEeCChhhhhhcC--cCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHHHHHhhh
Q 001348 226 --RIIVTSRDKQVLEKYG--VDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAIKVLASF 298 (1094)
Q Consensus 226 --rIiiTTR~~~v~~~~~--~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg~~ 298 (1094)
-|=-|||...+...+. ..-+.+++..+.+|-.++..+.|-.-. .+--.+.+.+|++++.|-|--..-+-..
T Consensus 150 FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~--i~i~~~~~~~Ia~rsrGtPRiAnrll~r 224 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN--IEIDEDAAEEIARRSRGTPRIANRLLRR 224 (233)
T ss_dssp -EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT---EE-HHHHHHHHHCTTTSHHHHHHHHHH
T ss_pred ceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC--CCcCHHHHHHHHHhcCCChHHHHHHHHH
Confidence 2445777654433221 234568999999999999998874322 2334577889999999999655444333
No 66
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.29 E-value=1.1e-06 Score=91.11 Aligned_cols=50 Identities=24% Similarity=0.434 Sum_probs=35.8
Q ss_pred CeeehhHHHHHHHhccc-cCCCCeEEEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 93 GLIGLDARIERIKSLLC-IGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 93 ~~vGr~~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
.||||+++++++...+. ......+.+.|+|.+|+|||+|+++++.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 38999999999999994 233567999999999999999999999987776
No 67
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.28 E-value=9.4e-06 Score=92.89 Aligned_cols=198 Identities=17% Similarity=0.164 Sum_probs=108.4
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccc-cc-eEEeeechhhhccCCChHHH
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKF-ES-KCFMANVREESEKGGGLVHL 165 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~-~~~~~~~~~~~~~~~~~~~l 165 (1094)
|...++++|++..++.+..++.. +..+.+.++|++|+||||+|+++++.+...- .. .+++. ..+.... ....+
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~--~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~-~~~~~~~--~~~~~ 85 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDS--PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFN-VADFFDQ--GKKYL 85 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEec-hhhhhhc--chhhh
Confidence 66677899999999999998854 3345678999999999999999998764332 22 23332 2111100 00000
Q ss_pred HHH-HHHhhhccCCcccCCCchHHHHHHh---------cCCeEEEEEecCCChH--hHHHHhcCCCCCCCCceEEEEeCC
Q 001348 166 RDR-LLSQILDESIRIETPYIPHYIRERL---------QCMKVFIVLDDVNKFR--QLEYLAGGLDRFGLGSRIIVTSRD 233 (1094)
Q Consensus 166 ~~~-ll~~l~~~~~~~~~~~~~~~l~~~L---------~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIiiTTR~ 233 (1094)
... -........... .......+++.+ ...+-+||+||++... ..+.+...+......+++|+||..
T Consensus 86 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~ 164 (337)
T PRK12402 86 VEDPRFAHFLGTDKRI-RSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQ 164 (337)
T ss_pred hcCcchhhhhhhhhhh-ccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence 000 000000000000 000011222111 1334589999996552 233444333333456778887754
Q ss_pred hh-hhhhc-CcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHHH
Q 001348 234 KQ-VLEKY-GVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAIK 293 (1094)
Q Consensus 234 ~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~ 293 (1094)
.. +.... .....+++.+++.++..+++...+-..... --.+....++++++|.+-.+.
T Consensus 165 ~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 165 PSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD--YDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred hhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 32 22221 233578899999999998888876432221 223556778888888765543
No 68
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=2e-05 Score=93.31 Aligned_cols=192 Identities=14% Similarity=0.104 Sum_probs=114.6
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhc--cccceEEeeechhhhcc--CCChH
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISR--KFESKCFMANVREESEK--GGGLV 163 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~F~~~~~~~~~~~~~~~--~~~~~ 163 (1094)
|...++++|.+..++.|...+..+. -...+.++|++|+||||+|+.+++.+.. .+...|+.+........ ..++.
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~ 88 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVL 88 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceE
Confidence 6777889999999999998886432 3456789999999999999999997642 23333443321100000 00000
Q ss_pred HHHHHHHHhhhccCCcccCCCchHHHHHH-----hcCCeEEEEEecCCCh--HhHHHHhcCCCCCCCCceEEEEeCCh-h
Q 001348 164 HLRDRLLSQILDESIRIETPYIPHYIRER-----LQCMKVFIVLDDVNKF--RQLEYLAGGLDRFGLGSRIIVTSRDK-Q 235 (1094)
Q Consensus 164 ~l~~~ll~~l~~~~~~~~~~~~~~~l~~~-----L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~-~ 235 (1094)
.+... .....+..+.+++. ..+++-++|+|+++.. ..++.|...+........+|++|... .
T Consensus 89 --------el~~~--~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~k 158 (504)
T PRK14963 89 --------EIDAA--SNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEK 158 (504)
T ss_pred --------Eeccc--ccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhh
Confidence 00000 00000011222222 2345668899999755 45777776665545556666655443 3
Q ss_pred hhhhc-CcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHH
Q 001348 236 VLEKY-GVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAI 292 (1094)
Q Consensus 236 v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 292 (1094)
+.... .....+++..++.++..+.+.+.+-...... -.+....|++.++|.+--+
T Consensus 159 l~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i--~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 159 MPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREA--EPEALQLVARLADGAMRDA 214 (504)
T ss_pred CChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 32222 2346899999999999999988774333221 2345678899999988544
No 69
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=1.6e-05 Score=91.17 Aligned_cols=193 Identities=13% Similarity=0.137 Sum_probs=111.7
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccc---eEEeeechhhhccCCChHH
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFES---KCFMANVREESEKGGGLVH 164 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~---~~~~~~~~~~~~~~~~~~~ 164 (1094)
|...++++|.+..++.+.+.+..+ .-...+.++|+.|+||||+|+.+++.+...... -|-.+. .-..
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~---------~c~~ 81 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSLG-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCI---------ICKE 81 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHcC-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH---------HHHH
Confidence 677789999999999999988643 234677899999999999999999876422110 000000 0000
Q ss_pred HHHHHHHhhhccCCcc-cCCCchHHHHHHh-----cCCeEEEEEecCCChH--hHHHHhcCCCCCCCCceEEEEeCChh-
Q 001348 165 LRDRLLSQILDESIRI-ETPYIPHYIRERL-----QCMKVFIVLDDVNKFR--QLEYLAGGLDRFGLGSRIIVTSRDKQ- 235 (1094)
Q Consensus 165 l~~~ll~~l~~~~~~~-~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIiiTTR~~~- 235 (1094)
+.......+..-+... ...+..+.+.+.+ .+++-++|+|+++... .++.++..+.......++|++|.+..
T Consensus 82 ~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~ 161 (363)
T PRK14961 82 IEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEK 161 (363)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHh
Confidence 0000000000000000 0000011111111 2356689999997664 46667766655555677777776543
Q ss_pred hhhh-cCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHH
Q 001348 236 VLEK-YGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAI 292 (1094)
Q Consensus 236 v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 292 (1094)
+... .+....+++++++.++..+.+...+-..... --.+.+..|++.++|.|-.+
T Consensus 162 l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~--i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 162 IPKTILSRCLQFKLKIISEEKIFNFLKYILIKESID--TDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred hhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 3322 2234789999999999998888766432211 12245677888999988543
No 70
>PLN03025 replication factor C subunit; Provisional
Probab=98.25 E-value=8.1e-06 Score=92.19 Aligned_cols=183 Identities=14% Similarity=0.192 Sum_probs=107.7
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhc-cccceEEeeechhhhccCCChHHHH
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISR-KFESKCFMANVREESEKGGGLVHLR 166 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~~~~~~~~~~l~ 166 (1094)
|...++++|.+..++.|..++.. ++.+-+.++|++|+||||+|+++++.+.. .|...+.-.+. ++. .+... .
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~---sd~-~~~~~-v 81 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARD--GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA---SDD-RGIDV-V 81 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc---ccc-ccHHH-H
Confidence 66778899999999999888753 33445779999999999999999997633 33322211111 111 22222 2
Q ss_pred HHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCChH--hHHHHhcCCCCCCCCceEEEEeCCh-hhhhh-cCc
Q 001348 167 DRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKFR--QLEYLAGGLDRFGLGSRIIVTSRDK-QVLEK-YGV 242 (1094)
Q Consensus 167 ~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIiiTTR~~-~v~~~-~~~ 242 (1094)
+..+.......... -.++.-++|||+++... +-..|..........+++|+++... .+... ...
T Consensus 82 r~~i~~~~~~~~~~------------~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SR 149 (319)
T PLN03025 82 RNKIKMFAQKKVTL------------PPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSR 149 (319)
T ss_pred HHHHHHHHhccccC------------CCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHh
Confidence 22222211110000 01346689999997652 3344443333345567777777543 22221 112
Q ss_pred CeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchH
Q 001348 243 DHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLA 291 (1094)
Q Consensus 243 ~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLa 291 (1094)
...++++.++.++..+.+.+.+-.....- -.+....+++.++|-.-.
T Consensus 150 c~~i~f~~l~~~~l~~~L~~i~~~egi~i--~~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 150 CAIVRFSRLSDQEILGRLMKVVEAEKVPY--VPEGLEAIIFTADGDMRQ 196 (319)
T ss_pred hhcccCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence 35789999999999998888774322211 134567888888886533
No 71
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.25 E-value=2.5e-05 Score=88.58 Aligned_cols=184 Identities=15% Similarity=0.173 Sum_probs=107.5
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHH
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRD 167 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~ 167 (1094)
|...++++|++..++.+..++..+ ..+.+.|+|.+|.||||+|+.+++.+........++.. . .+.. .+.. ..+
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~-~-~~~~-~~~~-~~~ 86 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLEL-N-ASDE-RGID-VIR 86 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEe-c-cccc-cchH-HHH
Confidence 566678999999999999988643 34457999999999999999999976433211112211 0 0010 1111 111
Q ss_pred HHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCCh--HhHHHHhcCCCCCCCCceEEEEeCCh-hhhhh-cCcC
Q 001348 168 RLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKF--RQLEYLAGGLDRFGLGSRIIVTSRDK-QVLEK-YGVD 243 (1094)
Q Consensus 168 ~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~-~v~~~-~~~~ 243 (1094)
..+.++.... +. -...+-++|+|+++.. +..+.+..........+++|+++... .+... ....
T Consensus 87 ~~i~~~~~~~-~~------------~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~ 153 (319)
T PRK00440 87 NKIKEFARTA-PV------------GGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRC 153 (319)
T ss_pred HHHHHHHhcC-CC------------CCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHh
Confidence 1222211110 00 0123568899998654 23444554444445567777777432 22111 1123
Q ss_pred eEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHH
Q 001348 244 HIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAI 292 (1094)
Q Consensus 244 ~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 292 (1094)
..+++++++.++....+...+-..... --.+....+++.++|.+--+
T Consensus 154 ~~~~~~~l~~~ei~~~l~~~~~~~~~~--i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 154 AVFRFSPLKKEAVAERLRYIAENEGIE--ITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred heeeeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 468999999999988888877433221 12345677888899887553
No 72
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=1.7e-05 Score=94.12 Aligned_cols=181 Identities=15% Similarity=0.110 Sum_probs=112.0
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccc---------------------cce
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKF---------------------ESK 146 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F---------------------~~~ 146 (1094)
|...+++||.+...+.|.+++..+. -...+.++|+.|+||||+|+.+++.+-... ...
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDv 89 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDL 89 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCce
Confidence 6778899999999999999986432 246888999999999999999998653211 001
Q ss_pred EEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCCh--HhHHHHhcCCCCCCCC
Q 001348 147 CFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKF--RQLEYLAGGLDRFGLG 224 (1094)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~g 224 (1094)
+.+.. +.. .++.++ +.++..+. .....+++-++|+|+|+.. .....|+..+.....+
T Consensus 90 iEIDA----As~-~~VddI-Reli~~~~---------------y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~ 148 (702)
T PRK14960 90 IEIDA----ASR-TKVEDT-RELLDNVP---------------YAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEH 148 (702)
T ss_pred EEecc----ccc-CCHHHH-HHHHHHHh---------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 11100 000 111111 11111110 0112356678999999765 3566666655544456
Q ss_pred ceEEEEeCChhh-hhh-cCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHH
Q 001348 225 SRIIVTSRDKQV-LEK-YGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAI 292 (1094)
Q Consensus 225 srIiiTTR~~~v-~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 292 (1094)
.++|++|.+..- ... ......++++.++.++..+.+.+.+-..... --.+....|++.++|.+-.+
T Consensus 149 v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~--id~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 149 VKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIA--ADQDAIWQIAESAQGSLRDA 216 (702)
T ss_pred cEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 778887776532 211 2345789999999999999888776432221 22345577888898877443
No 73
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.23 E-value=7e-06 Score=81.02 Aligned_cols=123 Identities=15% Similarity=0.234 Sum_probs=70.5
Q ss_pred eehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHHHHHhhh
Q 001348 95 IGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDRLLSQIL 174 (1094)
Q Consensus 95 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~ 174 (1094)
+|++..+.++...+... ..+.+.|+|.+|+||||+|+++++.+...-...+++. ..+.... ....... ...
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~-~~~~~~~----~~~~~~~--~~~ 71 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN-ASDLLEG----LVVAELF--GHF 71 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe-hhhhhhh----hHHHHHh--hhh
Confidence 47888899998887532 3568889999999999999999998753323333433 2221111 0000000 000
Q ss_pred ccCCcccCCCchHHHHHHhcCCeEEEEEecCCCh-----HhHHHHhcCCCCC---CCCceEEEEeCChh
Q 001348 175 DESIRIETPYIPHYIRERLQCMKVFIVLDDVNKF-----RQLEYLAGGLDRF---GLGSRIIVTSRDKQ 235 (1094)
Q Consensus 175 ~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-----~~~~~l~~~~~~~---~~gsrIiiTTR~~~ 235 (1094)
............++.++|+||++.. ..+..+....... ..+.+||+||.+..
T Consensus 72 ---------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ---------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ---------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011112223456789999999853 2233333333221 36788888888653
No 74
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=1.8e-05 Score=96.65 Aligned_cols=187 Identities=12% Similarity=0.114 Sum_probs=115.3
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhcc-c-cc-eEEeeech-----------
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRK-F-ES-KCFMANVR----------- 153 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F-~~-~~~~~~~~----------- 153 (1094)
|...+++||.+..++.|.+.+..+. =...+.++|+.|+||||+|+.+++.+-.. . .. -|..+...
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 6777899999999999999886432 24556899999999999999999876432 1 00 11111000
Q ss_pred ---hhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCCh--HhHHHHhcCCCCCCCCceEE
Q 001348 154 ---EESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKF--RQLEYLAGGLDRFGLGSRII 228 (1094)
Q Consensus 154 ---~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIi 228 (1094)
..... .++..+ +++...+. .....+++-++|||+++.. ...+.|+..+.......++|
T Consensus 91 iEidAas~-~kVDdI-ReLie~v~---------------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFI 153 (944)
T PRK14949 91 IEVDAASR-TKVDDT-RELLDNVQ---------------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFL 153 (944)
T ss_pred EEeccccc-cCHHHH-HHHHHHHH---------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 00000 111111 22222110 1112467789999999665 55777776665555567777
Q ss_pred EEeCChh-hhhh-cCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHHHH
Q 001348 229 VTSRDKQ-VLEK-YGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAIKV 294 (1094)
Q Consensus 229 iTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 294 (1094)
++|.+.+ +... ......|+++.++.++..+.+.+.+-... ..--.+..+.|++.++|.|--+..
T Consensus 154 LaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg--I~~edeAL~lIA~~S~Gd~R~ALn 219 (944)
T PRK14949 154 LATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ--LPFEAEALTLLAKAANGSMRDALS 219 (944)
T ss_pred EECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 6665543 4322 22347899999999999999887663321 112235567899999998854433
No 75
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.22 E-value=4.3e-06 Score=94.16 Aligned_cols=53 Identities=21% Similarity=0.259 Sum_probs=29.1
Q ss_pred CCCCeeecCCCCCcccchhhcCCCCCCEEEccCCCCC--C-CCCccccccccccccccc
Q 001348 755 SLLRSLDLRKNNFEYLPASMKHLSKLKSLDLSCCNML--Q-SLPELPLQLKFLQAKDCK 810 (1094)
Q Consensus 755 ~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~~~~l--~-~lp~~~~~L~~L~~~~c~ 810 (1094)
++|+.|++++|....+|..+. .+|+.|+++.|... . ....+|.++ .|.+.+|-
T Consensus 156 sSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~l 211 (426)
T PRK15386 156 PSLKTLSLTGCSNIILPEKLP--ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSV 211 (426)
T ss_pred CcccEEEecCCCcccCccccc--ccCcEEEecccccccccCccccccccc-Eechhhhc
Confidence 467777777776655554332 47777777665311 1 111334455 66666653
No 76
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=1.2e-05 Score=94.94 Aligned_cols=198 Identities=10% Similarity=0.064 Sum_probs=112.5
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhcccc-ceEEeeechhhhccCCChHHHH
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFE-SKCFMANVREESEKGGGLVHLR 166 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-~~~~~~~~~~~~~~~~~~~~l~ 166 (1094)
|...+++||-+.-++.|.+.+..+. -...+.++|..|+||||+|+.+.+.+-..=. ..--+. ....+.-.--
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~------~~PCG~C~sC 84 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT------AQPCGQCRAC 84 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC------CCCCcccHHH
Confidence 6778899999999999999986432 2466789999999999999999986532100 000000 0000000000
Q ss_pred HHHHH----hhhccCC-cccCCCchHHHHHH-----hcCCeEEEEEecCCCh--HhHHHHhcCCCCCCCCceEEEEeCCh
Q 001348 167 DRLLS----QILDESI-RIETPYIPHYIRER-----LQCMKVFIVLDDVNKF--RQLEYLAGGLDRFGLGSRIIVTSRDK 234 (1094)
Q Consensus 167 ~~ll~----~l~~~~~-~~~~~~~~~~l~~~-----L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~ 234 (1094)
+.+.. ++..-+. .....+..+.+.+. ..++.-++|+|+++.. ...+.|+..+.......++|++|.+.
T Consensus 85 ~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep 164 (700)
T PRK12323 85 TEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDP 164 (700)
T ss_pred HHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCCh
Confidence 00000 0000000 00000011111111 2345668999999765 45777777666555566666555544
Q ss_pred -hhhhhc-CcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHHHH
Q 001348 235 -QVLEKY-GVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAIKV 294 (1094)
Q Consensus 235 -~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 294 (1094)
.+...+ .-...+.++.++.++..+.+.+.+-...... ..+..+.|++.++|.|.....
T Consensus 165 ~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~--d~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 165 QKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH--EVNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred HhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHH
Confidence 443322 2347899999999999998887763322211 224457889999998865433
No 77
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.17 E-value=4.6e-06 Score=89.27 Aligned_cols=150 Identities=16% Similarity=0.267 Sum_probs=90.9
Q ss_pred CCCCCCeeehhHHHHH---HHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHH
Q 001348 88 SSDFEGLIGLDARIER---IKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVH 164 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~ 164 (1094)
|..-++.||.+..+.+ |.+++ +.+....+.+||++|.||||||+.+...-+.+= ..|+.-.. ......++.+
T Consensus 134 PktL~dyvGQ~hlv~q~gllrs~i--eq~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfvelSA-t~a~t~dvR~ 208 (554)
T KOG2028|consen 134 PKTLDDYVGQSHLVGQDGLLRSLI--EQNRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVELSA-TNAKTNDVRD 208 (554)
T ss_pred cchHHHhcchhhhcCcchHHHHHH--HcCCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEEEec-cccchHHHHH
Confidence 4445566666654432 22222 345677888999999999999999998544431 33443222 2211122222
Q ss_pred HHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCC--ChHhHHHHhcCCCCCCCCceEEE--EeCChhh---h
Q 001348 165 LRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVN--KFRQLEYLAGGLDRFGLGSRIIV--TSRDKQV---L 237 (1094)
Q Consensus 165 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~--~~~~~~~l~~~~~~~~~gsrIii--TTR~~~v---~ 237 (1094)
+.+ +-. =...+..+|.+|.+|.|. +..|-+.+++. ...|.-++| ||.++.. .
T Consensus 209 ife----~aq--------------~~~~l~krkTilFiDEiHRFNksQQD~fLP~---VE~G~I~lIGATTENPSFqln~ 267 (554)
T KOG2028|consen 209 IFE----QAQ--------------NEKSLTKRKTILFIDEIHRFNKSQQDTFLPH---VENGDITLIGATTENPSFQLNA 267 (554)
T ss_pred HHH----HHH--------------HHHhhhcceeEEEeHHhhhhhhhhhhcccce---eccCceEEEecccCCCccchhH
Confidence 222 211 112356789999999994 34455555443 456776666 6766643 1
Q ss_pred hhcCcCeEEEccCCCHHHHHHHHHhh
Q 001348 238 EKYGVDHIYEVEELNNIEALELFCKY 263 (1094)
Q Consensus 238 ~~~~~~~~~~l~~L~~~ea~~Lf~~~ 263 (1094)
..+....++.++.|+.++...++.+.
T Consensus 268 aLlSRC~VfvLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 268 ALLSRCRVFVLEKLPVNAVVTILMRA 293 (554)
T ss_pred HHHhccceeEeccCCHHHHHHHHHHH
Confidence 22345689999999999999998873
No 78
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.16 E-value=6.3e-06 Score=79.95 Aligned_cols=113 Identities=18% Similarity=0.239 Sum_probs=69.0
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHhcc-----ccceEEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCC-chH
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQISRK-----FESKCFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPY-IPH 187 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~-~~~ 187 (1094)
+-+++.|+|.+|+|||++++.+.+..... -...+|+.. ... .....+.+.++.++........... ..+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~i~~~l~~~~~~~~~~~~l~~ 77 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNC-PSS----RTPRDFAQEILEALGLPLKSRQTSDELRS 77 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEH-HHH----SSHHHHHHHHHHHHT-SSSSTS-HHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEe-CCC----CCHHHHHHHHHHHhCccccccCCHHHHHH
Confidence 34689999999999999999999976543 223345543 221 3567888888888875544411111 245
Q ss_pred HHHHHhcCC-eEEEEEecCCCh---HhHHHHhcCCCCCCCCceEEEEeCC
Q 001348 188 YIRERLQCM-KVFIVLDDVNKF---RQLEYLAGGLDRFGLGSRIIVTSRD 233 (1094)
Q Consensus 188 ~l~~~L~~k-r~LlVLDdv~~~---~~~~~l~~~~~~~~~gsrIiiTTR~ 233 (1094)
.+.+.+... ..+||+|+++.. +.++.+..-.. ..+.+||+..++
T Consensus 78 ~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 78 LLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 555556544 469999999765 33555544333 566778877765
No 79
>PRK08727 hypothetical protein; Validated
Probab=98.16 E-value=2.7e-05 Score=83.53 Aligned_cols=169 Identities=17% Similarity=0.188 Sum_probs=95.6
Q ss_pred CCCCeeehhH-HHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHH
Q 001348 90 DFEGLIGLDA-RIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDR 168 (1094)
Q Consensus 90 ~~~~~vGr~~-~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ 168 (1094)
..+.||+-.. .+..+..+.. + .....+.|+|..|+|||+||+++++....+.....|+.. .+ ....
T Consensus 17 ~f~~f~~~~~n~~~~~~~~~~-~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~-~~----------~~~~ 83 (233)
T PRK08727 17 RFDSYIAAPDGLLAQLQALAA-G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPL-QA----------AAGR 83 (233)
T ss_pred ChhhccCCcHHHHHHHHHHHh-c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeH-HH----------hhhh
Confidence 4456765554 3444443332 1 223469999999999999999999987666545566641 11 1111
Q ss_pred HHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCCh---HhHH-HHhcCCCC-CCCCceEEEEeCChh--------
Q 001348 169 LLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKF---RQLE-YLAGGLDR-FGLGSRIIVTSRDKQ-------- 235 (1094)
Q Consensus 169 ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~---~~~~-~l~~~~~~-~~~gsrIiiTTR~~~-------- 235 (1094)
+. + ..+.+. +.-+||+||++.. ..++ .+...+.. ...|..||+|++..-
T Consensus 84 ~~----------------~-~~~~l~-~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~ 145 (233)
T PRK08727 84 LR----------------D-ALEALE-GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLP 145 (233)
T ss_pred HH----------------H-HHHHHh-cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhH
Confidence 10 0 111111 2348999999643 1222 22222111 134667999998531
Q ss_pred -hhhhcCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchH
Q 001348 236 -VLEKYGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLA 291 (1094)
Q Consensus 236 -v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLa 291 (1094)
+...+.....+++++++.++..+++.+++..... .--.+....+++.+.|-.-+
T Consensus 146 dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l--~l~~e~~~~La~~~~rd~r~ 200 (233)
T PRK08727 146 DLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGL--ALDEAAIDWLLTHGERELAG 200 (233)
T ss_pred HHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhCCCCHHH
Confidence 2222334568999999999999999987754221 11224455666666654433
No 80
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.14 E-value=0.0002 Score=81.61 Aligned_cols=200 Identities=15% Similarity=0.047 Sum_probs=113.1
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccc--cceEEeeechhhhccCCChHHH
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKF--ESKCFMANVREESEKGGGLVHL 165 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~~~~~~~~~~~~~~~~~l 165 (1094)
|....+++|.+...+.|.+.+..+. -...+.++|+.|+||+|+|.++++.+-.+= ........ ...-...+.-..
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~--~~~l~~~~~c~~ 91 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPP--PTSLAIDPDHPV 91 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccc--cccccCCCCChH
Confidence 6677889999999999999886432 245688999999999999999998653211 10000000 000000000000
Q ss_pred HHHHHHhh----h--c----cCC----cccCCCchHHHHHHh-----cCCeEEEEEecCCCh--HhHHHHhcCCCCCCCC
Q 001348 166 RDRLLSQI----L--D----ESI----RIETPYIPHYIRERL-----QCMKVFIVLDDVNKF--RQLEYLAGGLDRFGLG 224 (1094)
Q Consensus 166 ~~~ll~~l----~--~----~~~----~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~g 224 (1094)
-+.+...- . . +.. ..-..+..+.+.+.+ .+.+.++|+||++.. .....|+..+.....+
T Consensus 92 c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~ 171 (365)
T PRK07471 92 ARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPAR 171 (365)
T ss_pred HHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 11110000 0 0 000 000011123333333 245678999999654 3455565555444456
Q ss_pred ceEEEEeCChh-hhhh-cCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHHHHHh
Q 001348 225 SRIIVTSRDKQ-VLEK-YGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAIKVLA 296 (1094)
Q Consensus 225 srIiiTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg 296 (1094)
+.+|++|.+.+ +... ......+.+.+++.++..+++...... ..+ .....++..++|.|+....+.
T Consensus 172 ~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~---~~~---~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 172 SLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD---LPD---DPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred eEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc---CCH---HHHHHHHHHcCCCHHHHHHHh
Confidence 67777777664 3322 234578999999999999999876411 111 112678999999998765553
No 81
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.13 E-value=0.00011 Score=84.61 Aligned_cols=185 Identities=14% Similarity=0.124 Sum_probs=112.6
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhcc----ccc-----------------e
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRK----FES-----------------K 146 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----F~~-----------------~ 146 (1094)
|...+++||.+..++.+.+.+..+. -...+.++|++|+||||+|+.++..+... +.. .
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 6677889999999999999886432 24577899999999999999999875422 110 0
Q ss_pred EEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCCh--HhHHHHhcCCCCCCCC
Q 001348 147 CFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKF--RQLEYLAGGLDRFGLG 224 (1094)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~g 224 (1094)
.++... .. .+.. -.++++..+.. ....+++-++|+|+++.. .....+...+......
T Consensus 89 ~~~~~~----~~-~~~~-~~~~l~~~~~~---------------~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~ 147 (355)
T TIGR02397 89 IEIDAA----SN-NGVD-DIREILDNVKY---------------APSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEH 147 (355)
T ss_pred EEeecc----cc-CCHH-HHHHHHHHHhc---------------CcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccc
Confidence 111100 00 0111 11122221110 012234558889998655 4466666665544556
Q ss_pred ceEEEEeCChh-hhhh-cCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHHHHHh
Q 001348 225 SRIIVTSRDKQ-VLEK-YGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAIKVLA 296 (1094)
Q Consensus 225 srIiiTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg 296 (1094)
+.+|++|.+.. +... ......++.++++.++..+++...+-...... -.+.+..+++.++|.|..+....
T Consensus 148 ~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i--~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 148 VVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKI--EDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred eeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCChHHHHHHH
Confidence 77777775554 3322 22346789999999999988888764332211 13566788899999887665443
No 82
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=1.1e-07 Score=98.96 Aligned_cols=152 Identities=22% Similarity=0.271 Sum_probs=95.8
Q ss_pred CccEEEeccCCCC--ccccccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccc--hhhcccCcccee
Q 001348 569 NVRELYLRGTPIE--YVPSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFP--EILEKMGCLEDI 644 (1094)
Q Consensus 569 ~L~~L~L~~~~l~--~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p--~~l~~l~~L~~L 644 (1094)
.|++|||+...|+ .+..-+..+.+|+.|.|.++.+...+-..+.+-.+|+.|+|+.|+-..... -.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 5888899888776 555667788899999999988888777788888899999999988766532 346778888888
Q ss_pred eccCcccc--cccchhhc-cCCCcEEecCCCCCC---CCCCccccCCCcccEEecCCccC-c-cCCccccCCCCCcEEEc
Q 001348 645 DLEGTAIT--ELPSSIEY-LGGLTTLNLTGCSKL---DNLPENLGNLKSLKMLCANESAI-S-QLPSSITNLNELQVVWC 716 (1094)
Q Consensus 645 ~L~~~~i~--~lp~~l~~-l~~L~~L~L~~~~~~---~~lp~~l~~l~~L~~L~l~~~~i-~-~~p~~l~~l~~L~~L~l 716 (1094)
+|+.+.+. .+...+.+ -++|..|+|+||... ..+..-...+++|.+|++++|.. + .....+.+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 88887654 11111222 246777777776532 11222234456666666665522 1 11223334444444444
Q ss_pred cCCC
Q 001348 717 SGCR 720 (1094)
Q Consensus 717 ~~~~ 720 (1094)
+.|-
T Consensus 346 sRCY 349 (419)
T KOG2120|consen 346 SRCY 349 (419)
T ss_pred hhhc
Confidence 4443
No 83
>PF14516 AAA_35: AAA-like domain
Probab=98.13 E-value=0.0003 Score=79.63 Aligned_cols=205 Identities=12% Similarity=0.184 Sum_probs=118.7
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhc-cCCChHHHH
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESE-KGGGLVHLR 166 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~-~~~~~~~l~ 166 (1094)
+.+....|.|...-+++.+.+.. .-..+.|.|+-.+|||+|..++.+..+..=-..+++ +...... ...+.....
T Consensus 7 ~~~~~~Yi~R~~~e~~~~~~i~~---~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~i-d~~~~~~~~~~~~~~f~ 82 (331)
T PF14516_consen 7 PLDSPFYIERPPAEQECYQEIVQ---PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYI-DLQQLGSAIFSDLEQFL 82 (331)
T ss_pred CCCCCcccCchHHHHHHHHHHhc---CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEE-EeecCCCcccCCHHHHH
Confidence 56667788999555555555542 134899999999999999999999876542223344 3333221 113455555
Q ss_pred HHHHHhhhcc----C-----Cc--ccCCCc-hHHHHHHh---cCCeEEEEEecCCChHh----HHHHhcCCC-CC-----
Q 001348 167 DRLLSQILDE----S-----IR--IETPYI-PHYIRERL---QCMKVFIVLDDVNKFRQ----LEYLAGGLD-RF----- 221 (1094)
Q Consensus 167 ~~ll~~l~~~----~-----~~--~~~~~~-~~~l~~~L---~~kr~LlVLDdv~~~~~----~~~l~~~~~-~~----- 221 (1094)
+.+...+... . +. ...... ...+.+.+ .+++++|++|+|+..-. .+++.+.++ |.
T Consensus 83 ~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~ 162 (331)
T PF14516_consen 83 RWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKN 162 (331)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhccc
Confidence 5554444321 1 00 011111 33444433 25899999999965421 122222111 00
Q ss_pred C--CCceEEEEeCChh--hhhh-----cCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHH
Q 001348 222 G--LGSRIIVTSRDKQ--VLEK-----YGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAI 292 (1094)
Q Consensus 222 ~--~gsrIiiTTR~~~--v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 292 (1094)
. ...-.+|...... .... ..+...+++++++.+|...|..++-.. ..+ ...+++...++|+|.-+
T Consensus 163 ~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~---~~~---~~~~~l~~~tgGhP~Lv 236 (331)
T PF14516_consen 163 NPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE---FSQ---EQLEQLMDWTGGHPYLV 236 (331)
T ss_pred CcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc---CCH---HHHHHHHHHHCCCHHHH
Confidence 0 0111222222221 1111 234468899999999999999887422 111 22789999999999999
Q ss_pred HHHhhhhcCC
Q 001348 293 KVLASFFHRK 302 (1094)
Q Consensus 293 ~~lg~~L~~~ 302 (1094)
..++..+...
T Consensus 237 ~~~~~~l~~~ 246 (331)
T PF14516_consen 237 QKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHc
Confidence 9999988764
No 84
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=5.6e-05 Score=89.75 Aligned_cols=184 Identities=14% Similarity=0.133 Sum_probs=110.4
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccc---------------------cce
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKF---------------------ESK 146 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F---------------------~~~ 146 (1094)
|...+++||-+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.+.... ...
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 677789999999999999988643 2345678999999999999999998654211 111
Q ss_pred EEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCCh--HhHHHHhcCCCCCCCC
Q 001348 147 CFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKF--RQLEYLAGGLDRFGLG 224 (1094)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~g 224 (1094)
..+. . ... .++.++ ++++..+. .....+++-++|+|+++.. ...+.|+..+......
T Consensus 91 ieid-a---as~-~gvd~i-r~ii~~~~---------------~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~ 149 (546)
T PRK14957 91 IEID-A---ASR-TGVEET-KEILDNIQ---------------YMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEY 149 (546)
T ss_pred EEee-c---ccc-cCHHHH-HHHHHHHH---------------hhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCC
Confidence 1110 0 000 122211 11111110 0112356679999999754 4466676666554456
Q ss_pred ceEEEEeCCh-hhhhh-cCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCch-HHHHH
Q 001348 225 SRIIVTSRDK-QVLEK-YGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPL-AIKVL 295 (1094)
Q Consensus 225 srIiiTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL-al~~l 295 (1094)
+.+|++|.+. .+... ......++++.++.++..+.+.+.+-.... .--......|++.++|.+- |+..+
T Consensus 150 v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi--~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 150 VKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI--NSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred ceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 6666555444 34322 233578999999999988888775532221 1223445678888888653 43333
No 85
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=6.7e-05 Score=85.25 Aligned_cols=199 Identities=16% Similarity=0.209 Sum_probs=120.4
Q ss_pred CCCCCCeeehhHHHHHHHhcccc--CCCCeEEEEEEecCCCchhhHHHHHHHHHhccccc--eEEeeechhhhccCCChH
Q 001348 88 SSDFEGLIGLDARIERIKSLLCI--GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFES--KCFMANVREESEKGGGLV 163 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~~~~~~~~~ 163 (1094)
...++.+.+|+.+++++...|.. ....+.-+.|+|.+|.|||+.++.+++++...... .+++.+..- ....
T Consensus 13 ~~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~-----~t~~ 87 (366)
T COG1474 13 DYIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLEL-----RTPY 87 (366)
T ss_pred CCCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeC-----CCHH
Confidence 44556699999999999988854 12223348999999999999999999987766443 356654322 4556
Q ss_pred HHHHHHHHhhhccCCcccCC-CchHHHHHHhc--CCeEEEEEecCCChHh-----HHHHhcCCCCCCCCceE--EEEeCC
Q 001348 164 HLRDRLLSQILDESIRIETP-YIPHYIRERLQ--CMKVFIVLDDVNKFRQ-----LEYLAGGLDRFGLGSRI--IVTSRD 233 (1094)
Q Consensus 164 ~l~~~ll~~l~~~~~~~~~~-~~~~~l~~~L~--~kr~LlVLDdv~~~~~-----~~~l~~~~~~~~~gsrI--iiTTR~ 233 (1094)
++...++.++.......... +....+.+.+. ++.+++|||+++.... +-.|....... .++| |..+-+
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~ 165 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSND 165 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEecc
Confidence 77777877775221111111 22555666664 4789999999965432 22333322222 3443 344444
Q ss_pred hhhhhh--------cCcCeEEEccCCCHHHHHHHHHhhc---ccCCCCCchHHHHHHHHHHHhCC-CchHHHH
Q 001348 234 KQVLEK--------YGVDHIYEVEELNNIEALELFCKYA---FRQNHHPQDLMVISGRVVDYARG-NPLAIKV 294 (1094)
Q Consensus 234 ~~v~~~--------~~~~~~~~l~~L~~~ea~~Lf~~~a---f~~~~~~~~~~~~~~~i~~~~~G-lPLal~~ 294 (1094)
...... ++. ..+..++-+.+|-.+.+..++ |......++..+++..++..-+| .-.|+..
T Consensus 166 ~~~~~~ld~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidi 237 (366)
T COG1474 166 DKFLDYLDPRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDI 237 (366)
T ss_pred HHHHHHhhhhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHH
Confidence 433222 222 236677788888888887765 44444555555666666555554 3344433
No 86
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=3.8e-05 Score=88.75 Aligned_cols=192 Identities=15% Similarity=0.116 Sum_probs=110.8
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhcccc---ceEEeeechhhhccCCChHH
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFE---SKCFMANVREESEKGGGLVH 164 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~---~~~~~~~~~~~~~~~~~~~~ 164 (1094)
|...+++||-+..++.|..++..+. -...+.++|+.|+||||+|+.+++.+...-. ..|..+.. -..
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~s---------C~~ 83 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTS---------CLE 83 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcH---------HHH
Confidence 7778899999999999999886432 2346789999999999999999986543211 01111100 000
Q ss_pred HHHHHHHhhhccCC-cccCCCchHHHHHH-----hcCCeEEEEEecCCCh--HhHHHHhcCCCCCCCCceEEEEeCC-hh
Q 001348 165 LRDRLLSQILDESI-RIETPYIPHYIRER-----LQCMKVFIVLDDVNKF--RQLEYLAGGLDRFGLGSRIIVTSRD-KQ 235 (1094)
Q Consensus 165 l~~~ll~~l~~~~~-~~~~~~~~~~l~~~-----L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~-~~ 235 (1094)
+.......+..-+. .....+..+.+.+. ..++.-++|+|+++.. +.+++|+..+........+|.+|.+ ..
T Consensus 84 i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~k 163 (484)
T PRK14956 84 ITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHK 163 (484)
T ss_pred HHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhh
Confidence 00000000000000 00000011122221 2456678999999765 4577777666543445555545544 44
Q ss_pred hhhhc-CcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchH
Q 001348 236 VLEKY-GVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLA 291 (1094)
Q Consensus 236 v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLa 291 (1094)
+.... .....|.+..++.++..+.+.+.+-.... .--.+....|++.++|.+--
T Consensus 164 I~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi--~~e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 164 IPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENV--QYDQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred ccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCChHHH
Confidence 43332 23467999999999998888877633221 12235567899999998743
No 87
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.12 E-value=2e-05 Score=94.41 Aligned_cols=182 Identities=13% Similarity=0.115 Sum_probs=108.4
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhcccc---------------------ce
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFE---------------------SK 146 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~---------------------~~ 146 (1094)
|...+++||.+..++.|..++..+. -...+.++|+.|+||||+|+.++..+-..-. ..
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dv 90 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDL 90 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccce
Confidence 7778899999999999999986432 2467889999999999999999986432110 00
Q ss_pred EEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCChH--hHHHHhcCCCCCCCC
Q 001348 147 CFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKFR--QLEYLAGGLDRFGLG 224 (1094)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~g 224 (1094)
+.+.. ... .++.. .+.++.... .....+++-++|+|+++... ....|+..+......
T Consensus 91 lEida----As~-~gVd~-IRelle~a~---------------~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~ 149 (709)
T PRK08691 91 LEIDA----ASN-TGIDN-IREVLENAQ---------------YAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (709)
T ss_pred EEEec----ccc-CCHHH-HHHHHHHHH---------------hhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCC
Confidence 00000 000 11111 111111100 00123466789999997653 345555544433445
Q ss_pred ceEEEEeCChh-hhhh-cCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHHH
Q 001348 225 SRIIVTSRDKQ-VLEK-YGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAIK 293 (1094)
Q Consensus 225 srIiiTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~ 293 (1094)
+++|++|.+.. +... .+....+++..++.++..+.+.+.+-..... --.+....|++.++|.+.-+.
T Consensus 150 v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~--id~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 150 VKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA--YEPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred cEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHhCCCHHHHH
Confidence 67777776553 2221 2233568888999999998888776432221 123456788899988875443
No 88
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.12 E-value=5.2e-05 Score=89.43 Aligned_cols=186 Identities=15% Similarity=0.145 Sum_probs=112.1
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhcccc-------ceEEeeec-hhhh---
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFE-------SKCFMANV-REES--- 156 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-------~~~~~~~~-~~~~--- 156 (1094)
|....++||-+.-++.|...+..+ .-...+.++|+.|+||||+|+.+++.+-..-. ..|..+.. ....
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~ 95 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILND-RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHN 95 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCC
Confidence 777889999999999998877533 22467889999999999999999987532110 01111100 0000
Q ss_pred ---------ccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCCh--HhHHHHhcCCCCCCCCc
Q 001348 157 ---------EKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKF--RQLEYLAGGLDRFGLGS 225 (1094)
Q Consensus 157 ---------~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs 225 (1094)
....++.++.. ++... -...+.+++-++|+|+++.. .+++.|...+....+.+
T Consensus 96 h~Dv~eidaas~~~vd~Ir~-iie~a---------------~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~ 159 (507)
T PRK06645 96 HPDIIEIDAASKTSVDDIRR-IIESA---------------EYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHI 159 (507)
T ss_pred CCcEEEeeccCCCCHHHHHH-HHHHH---------------HhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCE
Confidence 00011111111 11111 01113456778999999774 45777776665545566
Q ss_pred eEEE-EeCChhhhhhc-CcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHH
Q 001348 226 RIIV-TSRDKQVLEKY-GVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAI 292 (1094)
Q Consensus 226 rIii-TTR~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 292 (1094)
.+|+ ||+...+.... .....+++..++.++..+.+.+.+-...... -.+....|++.++|.+--+
T Consensus 160 vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~i--e~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 160 IFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKT--DIEALRIIAYKSEGSARDA 226 (507)
T ss_pred EEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 6654 44444444332 2346799999999999999998874332211 2244567888898877443
No 89
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.11 E-value=3.6e-05 Score=89.05 Aligned_cols=171 Identities=20% Similarity=0.316 Sum_probs=97.6
Q ss_pred CCCeeehhHHHHHHHhcccc-----------CCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccC
Q 001348 91 FEGLIGLDARIERIKSLLCI-----------GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKG 159 (1094)
Q Consensus 91 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 159 (1094)
.+++.|++..+++|.+.+.. +-...+-|.++|++|.|||++|++++++....| +....
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~-----i~v~~------ 198 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF-----IRVVG------ 198 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCE-----EEeeh------
Confidence 34688999999999887632 113356789999999999999999999765432 21110
Q ss_pred CChHHHHHHHHHhhhccCCcccCCCchHHHHHH-hcCCeEEEEEecCCCh-------------Hh---HHHHhcCCCCC-
Q 001348 160 GGLVHLRDRLLSQILDESIRIETPYIPHYIRER-LQCMKVFIVLDDVNKF-------------RQ---LEYLAGGLDRF- 221 (1094)
Q Consensus 160 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~-------------~~---~~~l~~~~~~~- 221 (1094)
..+.. ...++. ......+.+. -...+.+|+|||++.. +. +..+......+
T Consensus 199 ---~~l~~----~~~g~~-----~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~ 266 (389)
T PRK03992 199 ---SELVQ----KFIGEG-----ARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD 266 (389)
T ss_pred ---HHHhH----hhccch-----HHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC
Confidence 01111 000000 0001111111 1235688999999653 11 22233222221
Q ss_pred -CCCceEEEEeCChhhhhh-c----CcCeEEEccCCCHHHHHHHHHhhcccCCCCC-chHHHHHHHHHHHhCCC
Q 001348 222 -GLGSRIIVTSRDKQVLEK-Y----GVDHIYEVEELNNIEALELFCKYAFRQNHHP-QDLMVISGRVVDYARGN 288 (1094)
Q Consensus 222 -~~gsrIiiTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~-~~~~~~~~~i~~~~~Gl 288 (1094)
..+.+||.||.....+.. + ..+..++++..+.++..++|..++.+..... .++ ..+++.+.|.
T Consensus 267 ~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~----~~la~~t~g~ 336 (389)
T PRK03992 267 PRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDL----EELAELTEGA 336 (389)
T ss_pred CCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCH----HHHHHHcCCC
Confidence 235567777765543221 1 2457899999999999999998875433222 233 3455555554
No 90
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.11 E-value=2.1e-05 Score=96.67 Aligned_cols=172 Identities=17% Similarity=0.287 Sum_probs=101.1
Q ss_pred CCCCCCeeehhHHHH---HHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHH
Q 001348 88 SSDFEGLIGLDARIE---RIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVH 164 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~---~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~ 164 (1094)
|...+++||.+..+. .+.+.+. .+....+.++|++|+||||+|+.+++.....|. .+..+ . .++.+
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~--~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~lna~---~---~~i~d 92 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIK--ADRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLNAV---L---AGVKD 92 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHh--cCCCceEEEECCCCCCHHHHHHHHHHHhcCcce---eehhh---h---hhhHH
Confidence 566678999998774 4555554 234567789999999999999999997765542 22111 0 11222
Q ss_pred HHHHHHHhhhccCCcccCCCchHHHHHHh--cCCeEEEEEecCCC--hHhHHHHhcCCCCCCCCceEEEE--eCChh--h
Q 001348 165 LRDRLLSQILDESIRIETPYIPHYIRERL--QCMKVFIVLDDVNK--FRQLEYLAGGLDRFGLGSRIIVT--SRDKQ--V 236 (1094)
Q Consensus 165 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L--~~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIiiT--TR~~~--v 236 (1094)
+ +.++. ...+.+ .+++.+|||||++. ..+.+.|.... ..|+.++|+ |.+.. +
T Consensus 93 i-r~~i~----------------~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l 152 (725)
T PRK13341 93 L-RAEVD----------------RAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEV 152 (725)
T ss_pred H-HHHHH----------------HHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhh
Confidence 1 11111 111111 24677999999964 45566666543 235555553 34331 2
Q ss_pred hhh-cCcCeEEEccCCCHHHHHHHHHhhcccC-----CCCCchHHHHHHHHHHHhCCCch
Q 001348 237 LEK-YGVDHIYEVEELNNIEALELFCKYAFRQ-----NHHPQDLMVISGRVVDYARGNPL 290 (1094)
Q Consensus 237 ~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~-----~~~~~~~~~~~~~i~~~~~GlPL 290 (1094)
... ......+++++++.++...++.+.+-.. .....--.+....|++++.|.--
T Consensus 153 ~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 153 NKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred hhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 111 1124679999999999999998765310 11111223455677778877643
No 91
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.11 E-value=8e-05 Score=83.94 Aligned_cols=177 Identities=16% Similarity=0.170 Sum_probs=110.2
Q ss_pred CCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhc------cccceEEeeechhhhccCCChHHH
Q 001348 92 EGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISR------KFESKCFMANVREESEKGGGLVHL 165 (1094)
Q Consensus 92 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~F~~~~~~~~~~~~~~~~~~~~~l 165 (1094)
++++|.+..++++...+..+ .-.+...++|+.|+||||+|++++..+-. +.+...|... .. ...++.++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~-~~---~~i~v~~i 78 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI-NK---KSIGVDDI 78 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc-cC---CCCCHHHH
Confidence 56889999999999988643 23467789999999999999999987532 2232223210 00 10222332
Q ss_pred HHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecC--CChHhHHHHhcCCCCCCCCceEEEEeCChhhh-hh-cC
Q 001348 166 RDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDV--NKFRQLEYLAGGLDRFGLGSRIIVTSRDKQVL-EK-YG 241 (1094)
Q Consensus 166 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv--~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~-~~-~~ 241 (1094)
. .+...+... ...+++=++|+|++ .+...++.|+..+....+++.+|++|.+.+.+ .. ..
T Consensus 79 r-~~~~~~~~~---------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~S 142 (313)
T PRK05564 79 R-NIIEEVNKK---------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKS 142 (313)
T ss_pred H-HHHHHHhcC---------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHh
Confidence 2 222222110 11233444555555 45567888888887767789999888766432 22 22
Q ss_pred cCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHHHHH
Q 001348 242 VDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAIKVL 295 (1094)
Q Consensus 242 ~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 295 (1094)
....+++..++.++..+.+.+.+. .. -.+.++.++.+++|.|..+...
T Consensus 143 Rc~~~~~~~~~~~~~~~~l~~~~~--~~----~~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 143 RCQIYKLNRLSKEEIEKFISYKYN--DI----KEEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred hceeeeCCCcCHHHHHHHHHHHhc--CC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 347899999999999888866531 11 1233567889999998755433
No 92
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=1.8e-06 Score=90.11 Aligned_cols=207 Identities=18% Similarity=0.171 Sum_probs=115.1
Q ss_pred ccccceeecccccccccch-hhh-hcCCcccEEeccCCcccC--ccchhhcccCccceeeccCcccccccchh-hccCCC
Q 001348 590 LAKLEYLDLGHCTILESIS-TSI-CKLKSLLKLCLDNCSKLE--SFPEILEKMGCLEDIDLEGTAITELPSSI-EYLGGL 664 (1094)
Q Consensus 590 L~~L~~L~L~~~~~~~~lp-~~i-~~l~~L~~L~L~~~~~~~--~~p~~l~~l~~L~~L~L~~~~i~~lp~~l-~~l~~L 664 (1094)
+.-++.|.+.+|.+-..-. ..| ...+.++.|||.+|.+.. .+-..+.+||.|++|+|+.|.+..--.++ ..+.+|
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl 123 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNL 123 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccce
Confidence 3344555555554422111 112 235667777777765543 34455667777777777777665222222 244566
Q ss_pred cEEecCCCCCC-CCCCccccCCCcccEEecCCccCccCC---ccccCC-CCCcEEEccCCCCC---CCCCCCCCCCCCCE
Q 001348 665 TTLNLTGCSKL-DNLPENLGNLKSLKMLCANESAISQLP---SSITNL-NELQVVWCSGCRGL---ILPPSFSGLSYLTE 736 (1094)
Q Consensus 665 ~~L~L~~~~~~-~~lp~~l~~l~~L~~L~l~~~~i~~~p---~~l~~l-~~L~~L~l~~~~~~---~lp~~l~~l~~L~~ 736 (1094)
++|.|.|..+. ......+..++.+++|.++.|.+..+- ...... +.+.+|....|... ..-..-.-++++..
T Consensus 124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~s 203 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNS 203 (418)
T ss_pred EEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchh
Confidence 77776664432 223334555666666666666443220 000000 12333333333210 00000123567777
Q ss_pred EeCCCCCCCCCC--ccccCCCCCCeeecCCCCCcccc--hhhcCCCCCCEEEccCCCCCCCCCc
Q 001348 737 LDLSCCNLIEIP--QDIGCLSLLRSLDLRKNNFEYLP--ASMKHLSKLKSLDLSCCNMLQSLPE 796 (1094)
Q Consensus 737 L~Ls~n~l~~lp--~~l~~l~~L~~L~L~~n~l~~lp--~~l~~l~~L~~L~L~~~~~l~~lp~ 796 (1094)
+-+..|.+.+.. .....+|.+-.|+|+.|++.++. +.+..++.|..|.+++++++..+..
T Consensus 204 v~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 204 VFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred eeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence 888888776532 23556788889999999998665 3678899999999999998877653
No 93
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.10 E-value=2.1e-05 Score=84.30 Aligned_cols=176 Identities=16% Similarity=0.244 Sum_probs=96.1
Q ss_pred CCCCCCee-ehhHH-HHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHH
Q 001348 88 SSDFEGLI-GLDAR-IERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHL 165 (1094)
Q Consensus 88 ~~~~~~~v-Gr~~~-~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l 165 (1094)
+...++|+ |.+.. +..+.++.. .....+.+.|+|..|+|||+||+++++.....-....|+... . .
T Consensus 14 ~~~~d~f~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~-~----------~ 81 (227)
T PRK08903 14 PPTFDNFVAGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA-S----------P 81 (227)
T ss_pred hhhhcccccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH-H----------h
Confidence 34455665 54443 344444443 223456788999999999999999999764332234444321 1 0
Q ss_pred HHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCCh--HhHHHHhcCCCCC-CCCc-eEEEEeCChhhhh---
Q 001348 166 RDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKF--RQLEYLAGGLDRF-GLGS-RIIVTSRDKQVLE--- 238 (1094)
Q Consensus 166 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~-~~gs-rIiiTTR~~~v~~--- 238 (1094)
...+ ... ...-+||+||++.. .+.+.+...+... ..+. .||+|++......
T Consensus 82 ~~~~---------------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~ 139 (227)
T PRK08903 82 LLAF---------------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLR 139 (227)
T ss_pred HHHH---------------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCC
Confidence 0000 001 12346888999643 2223333222211 2333 3666665432111
Q ss_pred -----hcCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHHHHHhhhh
Q 001348 239 -----KYGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAIKVLASFF 299 (1094)
Q Consensus 239 -----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg~~L 299 (1094)
.+.....++++++++++-..++.+.+-.... .--.+....+++.+.|.+..+..+-..|
T Consensus 140 ~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v--~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 140 EDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGL--QLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 2222468999999998877777654422111 1123456677778888888776665543
No 94
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.10 E-value=2.5e-06 Score=70.30 Aligned_cols=58 Identities=28% Similarity=0.353 Sum_probs=33.0
Q ss_pred CccEEEeccCCCCcccc-ccccccccceeecccccccccchhhhhcCCcccEEeccCCc
Q 001348 569 NVRELYLRGTPIEYVPS-SIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCS 626 (1094)
Q Consensus 569 ~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~ 626 (1094)
+|++|++++|.+..+|. .+..+++|++|++++|.+....|..|.++++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45566666666666653 44556666666666655554444555555555555555553
No 95
>PRK09087 hypothetical protein; Validated
Probab=98.09 E-value=3.8e-05 Score=81.68 Aligned_cols=140 Identities=12% Similarity=0.082 Sum_probs=82.9
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhc
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQ 194 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 194 (1094)
.+.+.|||+.|+|||+|+++++.... ..|+.. ..+...++.. +.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~~-----------~~~~~~~~~~--------------------~~ 87 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIHP-----------NEIGSDAANA--------------------AA 87 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEecH-----------HHcchHHHHh--------------------hh
Confidence 45689999999999999999887532 224431 0111111111 11
Q ss_pred CCeEEEEEecCCChH-hHHHHhcCCCC-CCCCceEEEEeCC---------hhhhhhcCcCeEEEccCCCHHHHHHHHHhh
Q 001348 195 CMKVFIVLDDVNKFR-QLEYLAGGLDR-FGLGSRIIVTSRD---------KQVLEKYGVDHIYEVEELNNIEALELFCKY 263 (1094)
Q Consensus 195 ~kr~LlVLDdv~~~~-~~~~l~~~~~~-~~~gsrIiiTTR~---------~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 263 (1094)
+ -+|++||++... .-+.+...+.. ...|..||+|++. +.+...+....++++++++.++-.+++.+.
T Consensus 88 ~--~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 88 E--GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred c--CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHH
Confidence 1 278889995431 11222222211 1346789998873 233334456689999999999999999988
Q ss_pred cccCCCCCchHHHHHHHHHHHhCCCchHHHH
Q 001348 264 AFRQNHHPQDLMVISGRVVDYARGNPLAIKV 294 (1094)
Q Consensus 264 af~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 294 (1094)
+-.... .--.++..-|++.+.|..-++..
T Consensus 166 ~~~~~~--~l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 166 FADRQL--YVDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHHcCC--CCCHHHHHHHHHHhhhhHHHHHH
Confidence 743211 12235556677777666555443
No 96
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.09 E-value=5.6e-05 Score=92.25 Aligned_cols=204 Identities=16% Similarity=0.171 Sum_probs=110.5
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhc--cc---cceEEeeechhhhccCCCh
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISR--KF---ESKCFMANVREESEKGGGL 162 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~F---~~~~~~~~~~~~~~~~~~~ 162 (1094)
|...+.++|.+..+..+.+.+.. .....+.|+|++|+||||+|+.+++..+. .+ ...-|+..-.... . .+.
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~--~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l-~-~d~ 225 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS--PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTL-R-WDP 225 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhc-c-CCH
Confidence 56677899999999988877642 34567999999999999999999885432 11 1122322111000 0 111
Q ss_pred HHHHHHH---------------HHhhhc------------------cCCcccCCCchHHHHHHhcCCeEEEEEecCCCh-
Q 001348 163 VHLRDRL---------------LSQILD------------------ESIRIETPYIPHYIRERLQCMKVFIVLDDVNKF- 208 (1094)
Q Consensus 163 ~~l~~~l---------------l~~l~~------------------~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~- 208 (1094)
..+...+ +..... .....-+...+..+.+.++++++.++-|+.|..
T Consensus 226 ~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~ 305 (615)
T TIGR02903 226 REVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDD 305 (615)
T ss_pred HHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCC
Confidence 1111111 111000 000000111256777778888888887766543
Q ss_pred -HhHHHHhcCCCCCCCCceEEE--EeCChhhhh-hc-CcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHH
Q 001348 209 -RQLEYLAGGLDRFGLGSRIIV--TSRDKQVLE-KY-GVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVD 283 (1094)
Q Consensus 209 -~~~~~l~~~~~~~~~gsrIii--TTR~~~v~~-~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~ 283 (1094)
..|+.+...+....+...|+| ||++..... .+ .....+.+.+++.+|.++++.+.+-.....- -.++.+.|.+
T Consensus 306 ~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~l--s~eal~~L~~ 383 (615)
T TIGR02903 306 PNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHL--AAGVEELIAR 383 (615)
T ss_pred cccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHH
Confidence 336666555444444455555 666543211 11 1224678899999999999998763221111 1234444555
Q ss_pred HhCCCchHHHHHhh
Q 001348 284 YARGNPLAIKVLAS 297 (1094)
Q Consensus 284 ~~~GlPLal~~lg~ 297 (1094)
++..-+-|+..++.
T Consensus 384 ys~~gRraln~L~~ 397 (615)
T TIGR02903 384 YTIEGRKAVNILAD 397 (615)
T ss_pred CCCcHHHHHHHHHH
Confidence 54433455544443
No 97
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.09 E-value=3.4e-06 Score=69.54 Aligned_cols=61 Identities=26% Similarity=0.319 Sum_probs=54.0
Q ss_pred cccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccCccc
Q 001348 591 AKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEGTAI 651 (1094)
Q Consensus 591 ~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i 651 (1094)
++|++|++++|++....+..|.++++|++|++++|.+...-|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5789999999988766667889999999999999988777778999999999999999975
No 98
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.09 E-value=3.1e-05 Score=82.04 Aligned_cols=154 Identities=14% Similarity=0.218 Sum_probs=86.4
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHhccccc--eEEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHH
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQISRKFES--KCFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRE 191 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~ 191 (1094)
....+.|+|..|.|||.|++++++.+....+. ++|+. . .+..+.+...+... ....+++
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~-~----------~~f~~~~~~~~~~~--------~~~~~~~ 93 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS-A----------EEFIREFADALRDG--------EIEEFKD 93 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE-H----------HHHHHHHHHHHHTT--------SHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec-H----------HHHHHHHHHHHHcc--------cchhhhh
Confidence 34567899999999999999999987765443 33443 1 23333343333221 1455666
Q ss_pred HhcCCeEEEEEecCCChH---hHH-HHhcCCCC-CCCCceEEEEeCCh-h--------hhhhcCcCeEEEccCCCHHHHH
Q 001348 192 RLQCMKVFIVLDDVNKFR---QLE-YLAGGLDR-FGLGSRIIVTSRDK-Q--------VLEKYGVDHIYEVEELNNIEAL 257 (1094)
Q Consensus 192 ~L~~kr~LlVLDdv~~~~---~~~-~l~~~~~~-~~~gsrIiiTTR~~-~--------v~~~~~~~~~~~l~~L~~~ea~ 257 (1094)
.+++ -=+|++||++... .|+ .+..-+.. ...|-+||+|++.. . +...+...-.++++.++.++..
T Consensus 94 ~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~ 172 (219)
T PF00308_consen 94 RLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRR 172 (219)
T ss_dssp HHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHH
T ss_pred hhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHH
Confidence 6664 3467889995542 122 22222211 13477899999544 2 1222345568999999999999
Q ss_pred HHHHhhcccCCCCCchHHHHHHHHHHHhCCCc
Q 001348 258 ELFCKYAFRQNHHPQDLMVISGRVVDYARGNP 289 (1094)
Q Consensus 258 ~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlP 289 (1094)
+++.+.|-..... --.+++.-+++.+.+..
T Consensus 173 ~il~~~a~~~~~~--l~~~v~~~l~~~~~~~~ 202 (219)
T PF00308_consen 173 RILQKKAKERGIE--LPEEVIEYLARRFRRDV 202 (219)
T ss_dssp HHHHHHHHHTT----S-HHHHHHHHHHTTSSH
T ss_pred HHHHHHHHHhCCC--CcHHHHHHHHHhhcCCH
Confidence 9999888433221 12244455555554433
No 99
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.09 E-value=1.2e-07 Score=109.37 Aligned_cols=199 Identities=24% Similarity=0.183 Sum_probs=133.5
Q ss_pred CccCCccEEEeccCC---CCccccccccccccceeecccccccccchhhhhcC-CcccEEeccCCcc----------cCc
Q 001348 565 QISGNVRELYLRGTP---IEYVPSSIDCLAKLEYLDLGHCTILESISTSICKL-KSLLKLCLDNCSK----------LES 630 (1094)
Q Consensus 565 ~~~~~L~~L~L~~~~---l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l-~~L~~L~L~~~~~----------~~~ 630 (1094)
++..+++.|.+-... -+. |-+|..+..|+.|.|++|.+.. .- .+..+ ..|++|...+ +. .+.
T Consensus 81 d~lqkt~~lkl~~~pa~~pt~-pi~ifpF~sLr~LElrg~~L~~-~~-GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd 156 (1096)
T KOG1859|consen 81 DFLQKTKVLKLLPSPARDPTE-PISIFPFRSLRVLELRGCDLST-AK-GLQELRHQLEKLICHN-SLDALRHVFASCGGD 156 (1096)
T ss_pred HHHhhheeeeecccCCCCCCC-CceeccccceeeEEecCcchhh-hh-hhHHHHHhhhhhhhhc-cHHHHHHHHHHhccc
Confidence 334455555554422 222 6677888999999999998643 11 12112 2344443332 11 011
Q ss_pred cchhhcccCccceeeccCcccccccchhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccCCccccCCCC
Q 001348 631 FPEILEKMGCLEDIDLEGTAITELPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQLPSSITNLNE 710 (1094)
Q Consensus 631 ~p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p~~l~~l~~ 710 (1094)
+...+. ...|...+.++|.+..+..++.-++.|+.|+|+.|+....- .+..|+.|++|+++.|.+..+|..-..-..
T Consensus 157 ~~ns~~-Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~ 233 (1096)
T KOG1859|consen 157 ISNSPV-WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK 233 (1096)
T ss_pred cccchh-hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh
Confidence 111111 13477888899999999999999999999999998876543 788899999999999999988753322234
Q ss_pred CcEEEccCCCCCCCCCCCCCCCCCCEEeCCCCCCCCCC--ccccCCCCCCeeecCCCCCcccc
Q 001348 711 LQVVWCSGCRGLILPPSFSGLSYLTELDLSCCNLIEIP--QDIGCLSLLRSLDLRKNNFEYLP 771 (1094)
Q Consensus 711 L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~L~~n~l~~lp 771 (1094)
|+.|.++||....+-. +.++.+|+.||+++|-|.+.. ..++.+..|+.|+|.||.+-.-|
T Consensus 234 L~~L~lrnN~l~tL~g-ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 234 LQLLNLRNNALTTLRG-IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred heeeeecccHHHhhhh-HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 8888888887665543 678888899999988776532 23566778888899988766444
No 100
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.07 E-value=5.5e-05 Score=88.91 Aligned_cols=186 Identities=15% Similarity=0.145 Sum_probs=108.8
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhcc----cc-----------------ce
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRK----FE-----------------SK 146 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----F~-----------------~~ 146 (1094)
|...+++||.+...+.|...+..+. -...+.++|++|+||||+|+.+++.+... +. ..
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 6777899999988888888775332 23567899999999999999999865321 10 01
Q ss_pred EEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCCh--HhHHHHhcCCCCCCCC
Q 001348 147 CFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKF--RQLEYLAGGLDRFGLG 224 (1094)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~g 224 (1094)
..+.. +.. .++..+. ++..... .....+++-++|+|+++.. ++.+.|+..+......
T Consensus 89 ~el~a----a~~-~gid~iR-~i~~~~~---------------~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~ 147 (472)
T PRK14962 89 IELDA----ASN-RGIDEIR-KIRDAVG---------------YRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSH 147 (472)
T ss_pred EEEeC----ccc-CCHHHHH-HHHHHHh---------------hChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCc
Confidence 11100 000 1222221 1111110 0012346679999999755 3456666655543444
Q ss_pred ceEEEEeCC-hhhhhhc-CcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCC-CchHHHHHhh
Q 001348 225 SRIIVTSRD-KQVLEKY-GVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARG-NPLAIKVLAS 297 (1094)
Q Consensus 225 srIiiTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~G-lPLal~~lg~ 297 (1094)
..+|++|.+ ..+.... .....+++.+++.++....+.+.+...... --.+....|+++++| ++.|+..+-.
T Consensus 148 vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~--i~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 148 VVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIE--IDREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred EEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 555445443 3333322 234689999999999988888876432221 123455677877765 4566655544
No 101
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.04 E-value=5.7e-05 Score=91.06 Aligned_cols=183 Identities=13% Similarity=0.103 Sum_probs=111.8
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhcccc---------------------ce
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFE---------------------SK 146 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~---------------------~~ 146 (1094)
|...+++||-+.-++.|...+..+. -...+.++|..|+||||+|+.+++.+-.... ..
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ 90 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDL 90 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCc
Confidence 7778899999999999999886432 2355789999999999999999986533210 00
Q ss_pred EEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCCh--HhHHHHhcCCCCCCCC
Q 001348 147 CFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKF--RQLEYLAGGLDRFGLG 224 (1094)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~g 224 (1094)
..+.. ... .++.++ ++++..+. .....+++-++|+|+++.. ...+.|+..+......
T Consensus 91 ieida----as~-~~Vddi-R~li~~~~---------------~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~ 149 (647)
T PRK07994 91 IEIDA----ASR-TKVEDT-RELLDNVQ---------------YAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH 149 (647)
T ss_pred eeecc----ccc-CCHHHH-HHHHHHHH---------------hhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCC
Confidence 11100 000 111111 11111110 1112456778999999665 4566666655544456
Q ss_pred ceEEEEeCCh-hhhhh-cCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHHHH
Q 001348 225 SRIIVTSRDK-QVLEK-YGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAIKV 294 (1094)
Q Consensus 225 srIiiTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 294 (1094)
.++|++|.+. .+... ......|.++.++.++..+.+.+.+-..... .-.+....|++.++|.+-.+..
T Consensus 150 v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~--~e~~aL~~Ia~~s~Gs~R~Al~ 219 (647)
T PRK07994 150 VKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIP--FEPRALQLLARAADGSMRDALS 219 (647)
T ss_pred eEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 6666655554 34322 2235789999999999999888765322211 1234457788999998764433
No 102
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.03 E-value=8e-05 Score=79.99 Aligned_cols=169 Identities=12% Similarity=0.189 Sum_probs=94.2
Q ss_pred CCCee-ehhH-HHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHH
Q 001348 91 FEGLI-GLDA-RIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDR 168 (1094)
Q Consensus 91 ~~~~v-Gr~~-~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ 168 (1094)
.++|+ |... .+..+..+... ...+.+.|+|+.|+|||+||+++++....+-..+.|+.. .... ..
T Consensus 21 fd~f~~~~n~~a~~~l~~~~~~--~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~-~~~~---~~------- 87 (235)
T PRK08084 21 FASFYPGDNDSLLAALQNALRQ--EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPL-DKRA---WF------- 87 (235)
T ss_pred ccccccCccHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEH-HHHh---hh-------
Confidence 34454 6333 34444444432 234578999999999999999999976655334455532 1100 00
Q ss_pred HHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCCh---HhHHHHh-cCCCC-CCCC-ceEEEEeCChh-------
Q 001348 169 LLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKF---RQLEYLA-GGLDR-FGLG-SRIIVTSRDKQ------- 235 (1094)
Q Consensus 169 ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~---~~~~~l~-~~~~~-~~~g-srIiiTTR~~~------- 235 (1094)
...+.+.+.. --+|++||++.. .+|+..+ ..+.. ...| .++|+||+...
T Consensus 88 -----------------~~~~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~ 149 (235)
T PRK08084 88 -----------------VPEVLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGL 149 (235)
T ss_pred -----------------hHHHHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCccc
Confidence 0011111111 237889999553 2333211 11111 1123 47899987542
Q ss_pred --hhhhcCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHH
Q 001348 236 --VLEKYGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAI 292 (1094)
Q Consensus 236 --v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 292 (1094)
+...+....++++++++.++-.+++.++|..... .--.++..-+++++.|..-++
T Consensus 150 ~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~--~l~~~v~~~L~~~~~~d~r~l 206 (235)
T PRK08084 150 PDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGF--ELPEDVGRFLLKRLDREMRTL 206 (235)
T ss_pred HHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhhcCCHHHH
Confidence 2233445579999999999999998876643221 122355566777776654443
No 103
>PRK05642 DNA replication initiation factor; Validated
Probab=98.02 E-value=7.5e-05 Score=80.10 Aligned_cols=147 Identities=16% Similarity=0.278 Sum_probs=85.9
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhc
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQ 194 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 194 (1094)
...+.|||..|+|||.||+++++.+..+-..++|+.. . ++... ...+.+.++
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~-~----------~~~~~-----------------~~~~~~~~~ 96 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPL-A----------ELLDR-----------------GPELLDNLE 96 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeH-H----------HHHhh-----------------hHHHHHhhh
Confidence 3678999999999999999999977654344556542 1 11110 011223333
Q ss_pred CCeEEEEEecCCCh---HhHHH-HhcCCCC-CCCCceEEEEeCChhh---------hhhcCcCeEEEccCCCHHHHHHHH
Q 001348 195 CMKVFIVLDDVNKF---RQLEY-LAGGLDR-FGLGSRIIVTSRDKQV---------LEKYGVDHIYEVEELNNIEALELF 260 (1094)
Q Consensus 195 ~kr~LlVLDdv~~~---~~~~~-l~~~~~~-~~~gsrIiiTTR~~~v---------~~~~~~~~~~~l~~L~~~ea~~Lf 260 (1094)
+-. +||+||+... .+|+. +...+.. ...|.+||+|++...- ...++...++++++++.++-.+++
T Consensus 97 ~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il 175 (234)
T PRK05642 97 QYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRAL 175 (234)
T ss_pred hCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHH
Confidence 222 6788999532 23332 3332222 2346788888874321 112234468999999999999999
Q ss_pred HhhcccCCCCCchHHHHHHHHHHHhCCCchHH
Q 001348 261 CKYAFRQNHHPQDLMVISGRVVDYARGNPLAI 292 (1094)
Q Consensus 261 ~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 292 (1094)
..++......- -.++..-+++++.|-.-++
T Consensus 176 ~~ka~~~~~~l--~~ev~~~L~~~~~~d~r~l 205 (234)
T PRK05642 176 QLRASRRGLHL--TDEVGHFILTRGTRSMSAL 205 (234)
T ss_pred HHHHHHcCCCC--CHHHHHHHHHhcCCCHHHH
Confidence 86664332111 1355566666666654443
No 104
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=1.5e-07 Score=98.01 Aligned_cols=82 Identities=24% Similarity=0.297 Sum_probs=40.9
Q ss_pred ccceeeccccccccc-chhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccCc-cccc--ccchhhccCCCcEE
Q 001348 592 KLEYLDLGHCTILES-ISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEGT-AITE--LPSSIEYLGGLTTL 667 (1094)
Q Consensus 592 ~L~~L~L~~~~~~~~-lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~-~i~~--lp~~l~~l~~L~~L 667 (1094)
.|++|||+...+... +-.-+..+.+|+.|.|.++.+...+...+....+|+.|+|+.+ .+++ +.-.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 466666666544322 2223445566666666666555555555555555555555553 3331 11123444444444
Q ss_pred ecCCCC
Q 001348 668 NLTGCS 673 (1094)
Q Consensus 668 ~L~~~~ 673 (1094)
+|+.|.
T Consensus 266 NlsWc~ 271 (419)
T KOG2120|consen 266 NLSWCF 271 (419)
T ss_pred CchHhh
Confidence 444443
No 105
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=0.00011 Score=88.48 Aligned_cols=192 Identities=13% Similarity=0.112 Sum_probs=110.0
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccc----cceEEeeechhhhccCCChH
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKF----ESKCFMANVREESEKGGGLV 163 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F----~~~~~~~~~~~~~~~~~~~~ 163 (1094)
|...+++||-+.-++.|.+++..+. -...+.++|+.|+||||+|+.+++.+-..= .....-. .+.-
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~p---------Cg~C 81 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATP---------CGVC 81 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCC---------CCcc
Confidence 6778899999999999999886432 346778999999999999999988653110 0000000 0000
Q ss_pred HHHHHHHH----hhhccCCcccCCCchHHHHHHh--------cCCeEEEEEecCCCh--HhHHHHhcCCCCCCCCceEEE
Q 001348 164 HLRDRLLS----QILDESIRIETPYIPHYIRERL--------QCMKVFIVLDDVNKF--RQLEYLAGGLDRFGLGSRIIV 229 (1094)
Q Consensus 164 ~l~~~ll~----~l~~~~~~~~~~~~~~~l~~~L--------~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIii 229 (1094)
..-+.+.. ++..-+ .......+.+++.+ .++.-++|||+|+.. ...+.|+..+.......++|+
T Consensus 82 ~~C~~i~~g~h~D~~eld--aas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL 159 (618)
T PRK14951 82 QACRDIDSGRFVDYTELD--AASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVL 159 (618)
T ss_pred HHHHHHHcCCCCceeecC--cccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEE
Confidence 00000000 000000 00000011122211 234558899999765 446777766655445666666
Q ss_pred EeCC-hhhhhh-cCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHHH
Q 001348 230 TSRD-KQVLEK-YGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAIK 293 (1094)
Q Consensus 230 TTR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~ 293 (1094)
+|.+ ..+... ......++++.++.++..+.+.+.+-...... -.+....|++.++|.+--+.
T Consensus 160 ~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i--e~~AL~~La~~s~GslR~al 223 (618)
T PRK14951 160 ATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA--EPQALRLLARAARGSMRDAL 223 (618)
T ss_pred EECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHH
Confidence 6544 333322 23457899999999999998887764332221 22455778888888774443
No 106
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.99 E-value=0.00011 Score=83.10 Aligned_cols=196 Identities=15% Similarity=0.097 Sum_probs=114.4
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhcc----ccceEEeeechhhhccCCChH
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRK----FESKCFMANVREESEKGGGLV 163 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----F~~~~~~~~~~~~~~~~~~~~ 163 (1094)
|.....++|-+...+.+...+..+. -...+.|+|+.|+||||+|+.++..+-.. +....... . .+-.
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~-----~---~~~c 89 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLAD-----P---DPAS 89 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCC-----C---CCCC
Confidence 7778899999999999999986442 34578899999999999999999876432 11110000 0 0011
Q ss_pred HHHHHHHHh-------hhc---cCCcc-c---CCCchHHHHHHh-----cCCeEEEEEecCCChH--hHHHHhcCCCCCC
Q 001348 164 HLRDRLLSQ-------ILD---ESIRI-E---TPYIPHYIRERL-----QCMKVFIVLDDVNKFR--QLEYLAGGLDRFG 222 (1094)
Q Consensus 164 ~l~~~ll~~-------l~~---~~~~~-~---~~~~~~~l~~~L-----~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~ 222 (1094)
...+.+... +.. ..... . ..+..+.+.+.+ .+++-++|+|+++... ..+.|+..+....
T Consensus 90 ~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp 169 (351)
T PRK09112 90 PVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPP 169 (351)
T ss_pred HHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCC
Confidence 111222111 000 00000 0 011133334443 3466789999997653 3555555444333
Q ss_pred CCceEEEEe-CChhhhhhc-CcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHHHHHh
Q 001348 223 LGSRIIVTS-RDKQVLEKY-GVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAIKVLA 296 (1094)
Q Consensus 223 ~gsrIiiTT-R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg 296 (1094)
....+|++| +...++... .....+++.+++.++..+++........ -..+....+++.++|.|.....+.
T Consensus 170 ~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~----~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 170 ARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG----SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 445544444 443343322 2346899999999999999987432111 113446788999999998765543
No 107
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=0.00012 Score=85.62 Aligned_cols=180 Identities=13% Similarity=0.180 Sum_probs=111.3
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhcc---------------------ccce
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRK---------------------FESK 146 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~ 146 (1094)
|...+++||.+.-++.|.+.+..+. -.+.+.++|+.|+||||+|+.++..+-.. +...
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 7778899999999999988886432 24578899999999999999998754211 1111
Q ss_pred EEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCCh--HhHHHHhcCCCCCCCC
Q 001348 147 CFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKF--RQLEYLAGGLDRFGLG 224 (1094)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~g 224 (1094)
+.+... .. .++.++. .++..... ....+++-++|+|+++.. ...+.|+..+....+.
T Consensus 88 ~eidaa----s~-~~vddIR-~Iie~~~~---------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~ 146 (491)
T PRK14964 88 IEIDAA----SN-TSVDDIK-VILENSCY---------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPH 146 (491)
T ss_pred EEEecc----cC-CCHHHHH-HHHHHHHh---------------ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCC
Confidence 222110 01 2222221 12211110 012345668999999654 3466666666555566
Q ss_pred ceEEEEeCC-hhhhhh-cCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchH
Q 001348 225 SRIIVTSRD-KQVLEK-YGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLA 291 (1094)
Q Consensus 225 srIiiTTR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLa 291 (1094)
+++|++|.+ +.+... ......++++.++.++..+.+.+.+-..... --.+....|++.++|.+-.
T Consensus 147 v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~--i~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 147 VKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE--HDEESLKLIAENSSGSMRN 213 (491)
T ss_pred eEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 777766643 344332 2344789999999999999998877443221 1234456788888887753
No 108
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=0.00013 Score=84.70 Aligned_cols=198 Identities=12% Similarity=0.080 Sum_probs=109.5
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhcc--ccceEEeeechhhhccCCChHHH
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRK--FESKCFMANVREESEKGGGLVHL 165 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--F~~~~~~~~~~~~~~~~~~~~~l 165 (1094)
|...++++|.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++.+... +....|.....+. .+.-..
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~----c~~c~~ 86 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEP----CGECES 86 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCC----CCCCHH
Confidence 6778899999999999999886432 23558899999999999999999876431 1000000000000 000000
Q ss_pred HHHHHHhhhc-----cCCcccCCCchHHHHHHh-----cCCeEEEEEecCCCh--HhHHHHhcCCCCCCCCceEEEEe-C
Q 001348 166 RDRLLSQILD-----ESIRIETPYIPHYIRERL-----QCMKVFIVLDDVNKF--RQLEYLAGGLDRFGLGSRIIVTS-R 232 (1094)
Q Consensus 166 ~~~ll~~l~~-----~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTT-R 232 (1094)
-+.+...... +.......+....+.+.+ .+++-++|+|+++.. ..++.+...+....+.+.+|++| +
T Consensus 87 c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~ 166 (397)
T PRK14955 87 CRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTE 166 (397)
T ss_pred HHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 0000000000 000000001112222222 345668899999754 35667766665555667766655 3
Q ss_pred Chhhhhhc-CcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHH
Q 001348 233 DKQVLEKY-GVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAI 292 (1094)
Q Consensus 233 ~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 292 (1094)
...+.... .....+++++++.++..+.+...+-... ..--.+.+..+++.++|.+--+
T Consensus 167 ~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g--~~i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 167 LHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEG--ISVDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred hHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHH
Confidence 33443321 1235788999999999888877653221 1122356678899999977543
No 109
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.98 E-value=0.00015 Score=83.21 Aligned_cols=178 Identities=12% Similarity=0.104 Sum_probs=106.8
Q ss_pred CCCeeehhHHHHHHHhccccCCC--------CeEEEEEEecCCCchhhHHHHHHHHHhccc-------------------
Q 001348 91 FEGLIGLDARIERIKSLLCIGLP--------NIQIMGIWGMGGIGKTTIAGVLFNQISRKF------------------- 143 (1094)
Q Consensus 91 ~~~~vGr~~~~~~l~~~L~~~~~--------~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------------------- 143 (1094)
.++++|-+..++.|.+.+..+.. -.+.+.++|+.|+||||+|+.++..+-...
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~ 83 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGT 83 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCC
Confidence 45789999999999998865431 246788999999999999999998653321
Q ss_pred -cceEEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCCh--HhHHHHhcCCCC
Q 001348 144 -ESKCFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKF--RQLEYLAGGLDR 220 (1094)
Q Consensus 144 -~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~ 220 (1094)
+...++.. . . ...++.++. ++...+.. ....+++-++|+|+++.. .....|+..+..
T Consensus 84 hpD~~~i~~-~--~-~~i~i~~iR-~l~~~~~~---------------~p~~~~~kViiIDead~m~~~aanaLLk~LEe 143 (394)
T PRK07940 84 HPDVRVVAP-E--G-LSIGVDEVR-ELVTIAAR---------------RPSTGRWRIVVIEDADRLTERAANALLKAVEE 143 (394)
T ss_pred CCCEEEecc-c--c-ccCCHHHHH-HHHHHHHh---------------CcccCCcEEEEEechhhcCHHHHHHHHHHhhc
Confidence 11111110 0 0 001111211 11111110 011234557778999765 334556555544
Q ss_pred CCCCceEEEEeCCh-hhhhh-cCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHHHHH
Q 001348 221 FGLGSRIIVTSRDK-QVLEK-YGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAIKVL 295 (1094)
Q Consensus 221 ~~~gsrIiiTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 295 (1094)
..++..+|++|.+. .+... ......+.++.++.++..+.+.... .. ..+.+..++..++|.|.....+
T Consensus 144 p~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~---~~----~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 144 PPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD---GV----DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc---CC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 45567777776665 33333 2335789999999999998887532 11 1244678899999999755444
No 110
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.98 E-value=1.1e-05 Score=90.04 Aligned_cols=92 Identities=14% Similarity=0.135 Sum_probs=62.8
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhc-cccceEEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCC------c-h
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISR-KFESKCFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPY------I-P 186 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~------~-~ 186 (1094)
-..++|+|++|+||||||+++|+.+.. +|+..+|+..+++.. ..+.++++++...+........... . .
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~---~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~i 245 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERP---EEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVI 245 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCch---hHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHH
Confidence 356789999999999999999997654 699999999887743 3577888888755443322211110 1 1
Q ss_pred HHHHHH-hcCCeEEEEEecCCChH
Q 001348 187 HYIRER-LQCMKVFIVLDDVNKFR 209 (1094)
Q Consensus 187 ~~l~~~-L~~kr~LlVLDdv~~~~ 209 (1094)
+..+.. -.+++++|++|++....
T Consensus 246 e~Ae~~~e~G~dVlL~iDsItR~a 269 (416)
T PRK09376 246 EKAKRLVEHGKDVVILLDSITRLA 269 (416)
T ss_pred HHHHHHHHcCCCEEEEEEChHHHH
Confidence 111221 36799999999995543
No 111
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.98 E-value=8.5e-05 Score=87.24 Aligned_cols=165 Identities=15% Similarity=0.191 Sum_probs=98.3
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhcccc-c-eEEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRKFE-S-KCFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRER 192 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-~-~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 192 (1094)
..-+.|+|..|.|||+|++++++.+..... . ++|+. ..++...+...+.... .....+++.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~-----------~~~f~~~~~~~l~~~~------~~~~~~~~~ 203 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS-----------GDEFARKAVDILQKTH------KEIEQFKNE 203 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHHHhh------hHHHHHHHH
Confidence 356889999999999999999997664332 2 23332 2234444444432210 113344444
Q ss_pred hcCCeEEEEEecCCChH---h-HHHHhcCCCC-CCCCceEEEEeCCh-hh--------hhhcCcCeEEEccCCCHHHHHH
Q 001348 193 LQCMKVFIVLDDVNKFR---Q-LEYLAGGLDR-FGLGSRIIVTSRDK-QV--------LEKYGVDHIYEVEELNNIEALE 258 (1094)
Q Consensus 193 L~~kr~LlVLDdv~~~~---~-~~~l~~~~~~-~~~gsrIiiTTR~~-~v--------~~~~~~~~~~~l~~L~~~ea~~ 258 (1094)
++ +.-+||+||+.... . .+.+...+.. ...|..||+|+... .. ...+...-++++++++.++..+
T Consensus 204 ~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~ 282 (450)
T PRK14087 204 IC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATA 282 (450)
T ss_pred hc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHH
Confidence 44 34478889995432 2 2333332221 13455788886533 22 2223345678899999999999
Q ss_pred HHHhhcccCCCCCchHHHHHHHHHHHhCCCchHHHHHhh
Q 001348 259 LFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAIKVLAS 297 (1094)
Q Consensus 259 Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg~ 297 (1094)
++.+.+-.......--.+...-|++.+.|.|-.+.-+..
T Consensus 283 iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 283 IIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 999887432211122346778889999998877655543
No 112
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.96 E-value=9.6e-05 Score=87.80 Aligned_cols=190 Identities=15% Similarity=0.113 Sum_probs=104.7
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHH
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRD 167 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~ 167 (1094)
|....+++|.+..++.+.+.+..+. -.+.+.++|+.|+||||+|+.+++.+...-....- . .+--...+
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~-~---------Cg~C~sCr 80 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGD-C---------CNSCSVCE 80 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC-C---------CcccHHHH
Confidence 7788899999999999999885432 24678899999999999999999875321000000 0 00000000
Q ss_pred HHHHhhh----c-cCCcccCCCchHHHHHH-----hcCCeEEEEEecCCCh--HhHHHHhcCCCCCCCCceEEEEeCC-h
Q 001348 168 RLLSQIL----D-ESIRIETPYIPHYIRER-----LQCMKVFIVLDDVNKF--RQLEYLAGGLDRFGLGSRIIVTSRD-K 234 (1094)
Q Consensus 168 ~ll~~l~----~-~~~~~~~~~~~~~l~~~-----L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~-~ 234 (1094)
.+..... . ........+..+.+.+. ..+++=++|+|+++.. .....|+..+........+|++|.. .
T Consensus 81 ~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~ 160 (605)
T PRK05896 81 SINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQ 160 (605)
T ss_pred HHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChH
Confidence 0000000 0 00000000001111111 1123335999999664 4456666544433445555555543 3
Q ss_pred hhhhh-cCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCch
Q 001348 235 QVLEK-YGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPL 290 (1094)
Q Consensus 235 ~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL 290 (1094)
.+... ......+++..++.++....+...+-.....- -.+.+..+++.++|.+-
T Consensus 161 KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~I--s~eal~~La~lS~GdlR 215 (605)
T PRK05896 161 KIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKI--EDNAIDKIADLADGSLR 215 (605)
T ss_pred hhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHH
Confidence 33322 22346899999999999988887663322111 13446778888888654
No 113
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=9e-05 Score=88.13 Aligned_cols=181 Identities=14% Similarity=0.126 Sum_probs=109.2
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhcc---------------------ccce
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRK---------------------FESK 146 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~ 146 (1094)
|...+++||-+.-++.|.+.+..+. -...+.++|+.|+||||+|+.+++.+-.. |...
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 7778899999999999999996432 24567899999999999999999865321 1111
Q ss_pred EEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCCh--HhHHHHhcCCCCCCCC
Q 001348 147 CFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKF--RQLEYLAGGLDRFGLG 224 (1094)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~g 224 (1094)
..+... .. .++.++ +.++..+.- ....++.-++|+|+|+.. ...+.|+..+....+.
T Consensus 91 ~eidaa----s~-~~v~~i-R~l~~~~~~---------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~ 149 (509)
T PRK14958 91 FEVDAA----SR-TKVEDT-RELLDNIPY---------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSH 149 (509)
T ss_pred EEEccc----cc-CCHHHH-HHHHHHHhh---------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCC
Confidence 111100 00 222222 122221110 011245567889999764 4566666655554556
Q ss_pred ceEEEEeCCh-hhhhh-cCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHH
Q 001348 225 SRIIVTSRDK-QVLEK-YGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAI 292 (1094)
Q Consensus 225 srIiiTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 292 (1094)
+++|++|.+. .+... ......++++.++.++..+.+...+-...... -.+....|++.++|.+.-+
T Consensus 150 ~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~--~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 150 VKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEF--ENAALDLLARAANGSVRDA 217 (509)
T ss_pred eEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHHH
Confidence 7777666554 33222 12346788999999988877666553222211 1234567888888877544
No 114
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.92 E-value=5.5e-05 Score=87.59 Aligned_cols=155 Identities=19% Similarity=0.312 Sum_probs=91.5
Q ss_pred CCCCCeeehhHHHHHHHhcccc-----------CCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhc
Q 001348 89 SDFEGLIGLDARIERIKSLLCI-----------GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESE 157 (1094)
Q Consensus 89 ~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~ 157 (1094)
....++.|.+..+++|.+.+.. +-...+-|.++|++|.|||++|+++++.....|- .+.. .+
T Consensus 180 ~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi---~V~~-se--- 252 (438)
T PTZ00361 180 ESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFL---RVVG-SE--- 252 (438)
T ss_pred CCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEE---EEec-ch---
Confidence 3446688999999999887742 1123567889999999999999999998765541 1110 01
Q ss_pred cCCChHHHHHHHHHhhhccCCcccCCCc-hHHHHHHhcCCeEEEEEecCCChH----------------hHHHHhcCCCC
Q 001348 158 KGGGLVHLRDRLLSQILDESIRIETPYI-PHYIRERLQCMKVFIVLDDVNKFR----------------QLEYLAGGLDR 220 (1094)
Q Consensus 158 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~ 220 (1094)
+... ..++. ... ...+.....+.+.+|+||+++... .+..++..+..
T Consensus 253 -------L~~k----~~Ge~-----~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg 316 (438)
T PTZ00361 253 -------LIQK----YLGDG-----PKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDG 316 (438)
T ss_pred -------hhhh----hcchH-----HHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhh
Confidence 0000 00000 000 111122223467788889874321 12223322222
Q ss_pred C--CCCceEEEEeCChhhhhhc-----CcCeEEEccCCCHHHHHHHHHhhccc
Q 001348 221 F--GLGSRIIVTSRDKQVLEKY-----GVDHIYEVEELNNIEALELFCKYAFR 266 (1094)
Q Consensus 221 ~--~~gsrIiiTTR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~af~ 266 (1094)
+ ..+.+||.||.....+... ..+..++++..+.++..++|..++.+
T Consensus 317 ~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 317 FDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred hcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 1 2356788888765544321 24578999999999999999987643
No 115
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=0.00012 Score=87.59 Aligned_cols=180 Identities=13% Similarity=0.102 Sum_probs=107.8
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhcccc---------------------ce
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFE---------------------SK 146 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~---------------------~~ 146 (1094)
|...+++||-+.-++.|..++..+. -...+.++|+.|+||||+|+.++..+-.... ..
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 6777889999999999999886432 2456789999999999999999987532110 01
Q ss_pred EEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCChH--hHHHHhcCCCCCCCC
Q 001348 147 CFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKFR--QLEYLAGGLDRFGLG 224 (1094)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~g 224 (1094)
..+.. ... .++.++ ++++.... .....+++-++|+|+++... ..+.|+..+......
T Consensus 91 ~ei~~----~~~-~~vd~i-r~l~~~~~---------------~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~ 149 (527)
T PRK14969 91 IEVDA----ASN-TQVDAM-RELLDNAQ---------------YAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (527)
T ss_pred eEeec----ccc-CCHHHH-HHHHHHHh---------------hCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCC
Confidence 11100 000 111111 12221110 00123466789999997653 366666665544456
Q ss_pred ceEEEEeCChh-hhhh-cCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchH
Q 001348 225 SRIIVTSRDKQ-VLEK-YGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLA 291 (1094)
Q Consensus 225 srIiiTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLa 291 (1094)
+.+|++|.+.+ +... ......++++.++.++..+.+.+.+-..... ...+....|++.++|.+--
T Consensus 150 ~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~--~~~~al~~la~~s~Gslr~ 216 (527)
T PRK14969 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP--FDATALQLLARAAAGSMRD 216 (527)
T ss_pred EEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 66666665543 3222 1224678999999999988887765322211 1234457788888997753
No 116
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.87 E-value=0.0002 Score=84.05 Aligned_cols=156 Identities=15% Similarity=0.168 Sum_probs=89.8
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhcccc-c-eEEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRKFE-S-KCFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRER 192 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-~-~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 192 (1094)
..-+.|+|.+|+|||+||+++++.+....+ . ++|+. . .++...+...+... .....++.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~-~----------~~f~~~~~~~~~~~--------~~~~f~~~ 190 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-S----------EKFLNDLVDSMKEG--------KLNEFREK 190 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-H----------HHHHHHHHHHHhcc--------cHHHHHHH
Confidence 445899999999999999999998776543 2 33443 1 23333343333211 12334444
Q ss_pred hcCCeEEEEEecCCCh---HhH-HHHhcCCCC-CCCCceEEEEeC-Chhhhh--------hcCcCeEEEccCCCHHHHHH
Q 001348 193 LQCMKVFIVLDDVNKF---RQL-EYLAGGLDR-FGLGSRIIVTSR-DKQVLE--------KYGVDHIYEVEELNNIEALE 258 (1094)
Q Consensus 193 L~~kr~LlVLDdv~~~---~~~-~~l~~~~~~-~~~gsrIiiTTR-~~~v~~--------~~~~~~~~~l~~L~~~ea~~ 258 (1094)
++.+.-+||+||++.. ... +.+...+.. ...|..||+||. +..-+. .+.....++++..+.+.-.+
T Consensus 191 ~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~ 270 (440)
T PRK14088 191 YRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKK 270 (440)
T ss_pred HHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHH
Confidence 4444558999999643 111 222222211 123457888874 433221 12334578999999999999
Q ss_pred HHHhhcccCCCCCchHHHHHHHHHHHhCCCchH
Q 001348 259 LFCKYAFRQNHHPQDLMVISGRVVDYARGNPLA 291 (1094)
Q Consensus 259 Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLa 291 (1094)
++.+.+-..... --.++...|++.+.|.--.
T Consensus 271 IL~~~~~~~~~~--l~~ev~~~Ia~~~~~~~R~ 301 (440)
T PRK14088 271 IARKMLEIEHGE--LPEEVLNFVAENVDDNLRR 301 (440)
T ss_pred HHHHHHHhcCCC--CCHHHHHHHHhccccCHHH
Confidence 998887432221 1234566677776665433
No 117
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.00026 Score=81.80 Aligned_cols=181 Identities=14% Similarity=0.193 Sum_probs=107.2
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhcc--------ccceEEeeechhhhccC
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRK--------FESKCFMANVREESEKG 159 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--------F~~~~~~~~~~~~~~~~ 159 (1094)
|...++++|.+..++.+.+.+..+ .-.+.+.++|++|+||||+|+++.+.+... |...++-.+ .. ..
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~--~~-~~- 87 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELD--AA-SN- 87 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEec--cc-cC-
Confidence 677788999999999999998643 234688899999999999999998876431 222222111 00 00
Q ss_pred CChHHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCCh--HhHHHHhcCCCCCCCCceEEEEeCC-hhh
Q 001348 160 GGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKF--RQLEYLAGGLDRFGLGSRIIVTSRD-KQV 236 (1094)
Q Consensus 160 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~-~~v 236 (1094)
.+..++. +++.++.. ....+++-++|+|+++.. ..++.+...+......+.+|++|.. ..+
T Consensus 88 ~~~~~i~-~l~~~~~~---------------~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl 151 (367)
T PRK14970 88 NSVDDIR-NLIDQVRI---------------PPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKI 151 (367)
T ss_pred CCHHHHH-HHHHHHhh---------------ccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccC
Confidence 1112221 22221110 011234557999998654 3366665444333344556655533 333
Q ss_pred hhh-cCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchH
Q 001348 237 LEK-YGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLA 291 (1094)
Q Consensus 237 ~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLa 291 (1094)
... ......++.+.++.++....+...+......- -.+....+++.++|.+-.
T Consensus 152 ~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i--~~~al~~l~~~~~gdlr~ 205 (367)
T PRK14970 152 IPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKF--EDDALHIIAQKADGALRD 205 (367)
T ss_pred CHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHhCCCCHHH
Confidence 222 22346799999999999988888774332211 135667778888886553
No 118
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.86 E-value=0.00012 Score=86.06 Aligned_cols=159 Identities=20% Similarity=0.309 Sum_probs=91.9
Q ss_pred CCCCCeeehhHHHHHHHhcccc-----------CCCCeEEEEEEecCCCchhhHHHHHHHHHhccc-----cceEEeeec
Q 001348 89 SDFEGLIGLDARIERIKSLLCI-----------GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKF-----ESKCFMANV 152 (1094)
Q Consensus 89 ~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-----~~~~~~~~~ 152 (1094)
...+++.|.+..+++|.+.+.. +-...+-|.++|++|.|||++|+++++.+...+ ....|+. +
T Consensus 179 v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~-v 257 (512)
T TIGR03689 179 VTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN-I 257 (512)
T ss_pred CCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe-c
Confidence 3446788999999999887632 112356789999999999999999999876542 2233442 2
Q ss_pred hhhh--ccCC-ChHHHHHHHHHhhhccCCcccCCCchHHHHHH-hcCCeEEEEEecCCChH---------h-----HHHH
Q 001348 153 REES--EKGG-GLVHLRDRLLSQILDESIRIETPYIPHYIRER-LQCMKVFIVLDDVNKFR---------Q-----LEYL 214 (1094)
Q Consensus 153 ~~~~--~~~~-~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~~---------~-----~~~l 214 (1094)
.... .... ......+.+ ....++. -.+++++|+||+++..- + +..+
T Consensus 258 ~~~eLl~kyvGete~~ir~i----------------F~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~L 321 (512)
T TIGR03689 258 KGPELLNKYVGETERQIRLI----------------FQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQL 321 (512)
T ss_pred cchhhcccccchHHHHHHHH----------------HHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHH
Confidence 1100 0000 000011111 1111111 13478999999996421 1 2334
Q ss_pred hcCCCCCC--CCceEEEEeCChhhhhh-c----CcCeEEEccCCCHHHHHHHHHhhc
Q 001348 215 AGGLDRFG--LGSRIIVTSRDKQVLEK-Y----GVDHIYEVEELNNIEALELFCKYA 264 (1094)
Q Consensus 215 ~~~~~~~~--~gsrIiiTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~a 264 (1094)
+..++... .+..||.||.....+.. + ..+..++++..+.++..++|..+.
T Consensus 322 L~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 322 LSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred HHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 43333222 24445556654443221 1 345679999999999999999886
No 119
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=0.00046 Score=83.51 Aligned_cols=196 Identities=13% Similarity=0.096 Sum_probs=106.8
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhcc--ccceEEeeechhhhccCCChHHH
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRK--FESKCFMANVREESEKGGGLVHL 165 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--F~~~~~~~~~~~~~~~~~~~~~l 165 (1094)
|...+++||-+..++.|.+.+..+ .-...+.++|+.|+||||+|+.+++.+-.. .+...|.....+. .+.-..
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~----Cg~C~s 86 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEP----CGECES 86 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCC----CccCHH
Confidence 677889999999999999988533 224568899999999999999999875321 1100011000000 000000
Q ss_pred HHHHHHh----hhc-cCCcccCCCchHHHHHH-----hcCCeEEEEEecCCCh--HhHHHHhcCCCCCCCCceEEEEe-C
Q 001348 166 RDRLLSQ----ILD-ESIRIETPYIPHYIRER-----LQCMKVFIVLDDVNKF--RQLEYLAGGLDRFGLGSRIIVTS-R 232 (1094)
Q Consensus 166 ~~~ll~~----l~~-~~~~~~~~~~~~~l~~~-----L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTT-R 232 (1094)
-+.+... +.. ........+.+..+.+. ..+++-++|+|+++.. ...+.|+..+......+.+|++| +
T Consensus 87 C~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~ 166 (620)
T PRK14954 87 CRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTE 166 (620)
T ss_pred HHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 0000000 000 00000000111122222 2334557899999665 34666666555444456655555 4
Q ss_pred Chhhhhh-cCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCch
Q 001348 233 DKQVLEK-YGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPL 290 (1094)
Q Consensus 233 ~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL 290 (1094)
...+... ......+++..++.++....+.+.+-.... .--.+.+..+++.++|..-
T Consensus 167 ~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi--~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 167 LHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI--QIDADALQLIARKAQGSMR 223 (620)
T ss_pred hhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCHH
Confidence 3444332 234578999999999988888776532221 1123456788889998554
No 120
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.85 E-value=0.00011 Score=80.50 Aligned_cols=131 Identities=15% Similarity=0.170 Sum_probs=70.5
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHhccc--cceEEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHH
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQISRKF--ESKCFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRE 191 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~ 191 (1094)
...-+.++|++|.||||+|+.+++.+...- ....++..-+ .++ .....++. ...+++
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~---------~~l----~~~~~g~~--------~~~~~~ 99 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER---------ADL----VGEYIGHT--------AQKTRE 99 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH---------HHh----hhhhccch--------HHHHHH
Confidence 456788999999999999999998653211 1112222110 111 11111110 111122
Q ss_pred Hhc-CCeEEEEEecCCC----------hHhHHHHhcCCCCCCCCceEEEEeCChhhhh------hc--CcCeEEEccCCC
Q 001348 192 RLQ-CMKVFIVLDDVNK----------FRQLEYLAGGLDRFGLGSRIIVTSRDKQVLE------KY--GVDHIYEVEELN 252 (1094)
Q Consensus 192 ~L~-~kr~LlVLDdv~~----------~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~------~~--~~~~~~~l~~L~ 252 (1094)
.+. ...-+|++|+++. .++++.+............+|+++.....-. .. .....++++.++
T Consensus 100 ~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~ 179 (261)
T TIGR02881 100 VIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYT 179 (261)
T ss_pred HHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCC
Confidence 221 1234888999964 2345666655444333345555554332210 11 123568899999
Q ss_pred HHHHHHHHHhhcc
Q 001348 253 NIEALELFCKYAF 265 (1094)
Q Consensus 253 ~~ea~~Lf~~~af 265 (1094)
.+|..+++.+.+-
T Consensus 180 ~~el~~Il~~~~~ 192 (261)
T TIGR02881 180 VEELMEIAERMVK 192 (261)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987764
No 121
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.00053 Score=82.42 Aligned_cols=187 Identities=17% Similarity=0.184 Sum_probs=110.0
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccc--cc-eEE----------------
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKF--ES-KCF---------------- 148 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~~-~~~---------------- 148 (1094)
|...+++||.+..++.|...+..+. -...+.++|+.|+||||+|+.++..+-... .. -|=
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~ 87 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSI 87 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCc
Confidence 6777899999999999999986432 245678999999999999999998654211 00 000
Q ss_pred -eeechhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCCh--HhHHHHhcCCCCCCCCc
Q 001348 149 -MANVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKF--RQLEYLAGGLDRFGLGS 225 (1094)
Q Consensus 149 -~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs 225 (1094)
+..+.. ... .++.++ +++...+ ......+++-++|+|+++.. ...+.|+..+.......
T Consensus 88 dvieida-as~-~gvd~i-Rel~~~~---------------~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~ 149 (584)
T PRK14952 88 DVVELDA-ASH-GGVDDT-RELRDRA---------------FYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHL 149 (584)
T ss_pred eEEEecc-ccc-cCHHHH-HHHHHHH---------------HhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCe
Confidence 000000 000 111111 1111110 00112345568899998654 45666666665555566
Q ss_pred eEEEEeC-Chhhhhh-cCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCch-HHHHH
Q 001348 226 RIIVTSR-DKQVLEK-YGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPL-AIKVL 295 (1094)
Q Consensus 226 rIiiTTR-~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL-al~~l 295 (1094)
.+|++|. ...+... ......|+...++.++..+.+.+.+-...... -.+....|++.++|.+- |+..+
T Consensus 150 ~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i--~~~al~~Ia~~s~GdlR~aln~L 220 (584)
T PRK14952 150 IFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVV--DDAVYPLVIRAGGGSPRDTLSVL 220 (584)
T ss_pred EEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 6665554 3444433 23357899999999999888887664322211 12445677888888764 33333
No 122
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.84 E-value=0.00032 Score=82.19 Aligned_cols=156 Identities=15% Similarity=0.206 Sum_probs=89.2
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhccccc--eEEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRKFES--KCFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRER 192 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 192 (1094)
...+.|+|..|+|||+||+++++.+..+... .+|+. . .++...+...+... ....+++.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~-~----------~~~~~~~~~~~~~~--------~~~~~~~~ 196 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS-S----------EKFTNDFVNALRNN--------KMEEFKEK 196 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE-H----------HHHHHHHHHHHHcC--------CHHHHHHH
Confidence 4568899999999999999999987765432 33442 1 12233333333211 13334444
Q ss_pred hcCCeEEEEEecCCChH---h-HHHHhcCCCC-CCCCceEEEEeCCh-hhh--------hhcCcCeEEEccCCCHHHHHH
Q 001348 193 LQCMKVFIVLDDVNKFR---Q-LEYLAGGLDR-FGLGSRIIVTSRDK-QVL--------EKYGVDHIYEVEELNNIEALE 258 (1094)
Q Consensus 193 L~~kr~LlVLDdv~~~~---~-~~~l~~~~~~-~~~gsrIiiTTR~~-~v~--------~~~~~~~~~~l~~L~~~ea~~ 258 (1094)
+++ .=+|||||++... . .+.+...+.. ...|..||+|+... ..+ ..+.....+++++.+.++..+
T Consensus 197 ~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~ 275 (405)
T TIGR00362 197 YRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLA 275 (405)
T ss_pred HHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHH
Confidence 443 2378899996431 1 1222222211 12355678877532 221 122233578999999999999
Q ss_pred HHHhhcccCCCCCchHHHHHHHHHHHhCCCchHH
Q 001348 259 LFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAI 292 (1094)
Q Consensus 259 Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 292 (1094)
++...+-..... --.++...|++.+.|..-.+
T Consensus 276 il~~~~~~~~~~--l~~e~l~~ia~~~~~~~r~l 307 (405)
T TIGR00362 276 ILQKKAEEEGLE--LPDEVLEFIAKNIRSNVREL 307 (405)
T ss_pred HHHHHHHHcCCC--CCHHHHHHHHHhcCCCHHHH
Confidence 998887432221 12355666777777765543
No 123
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.0006 Score=81.62 Aligned_cols=188 Identities=12% Similarity=0.120 Sum_probs=113.1
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccc--cc-------------------e
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKF--ES-------------------K 146 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~~-------------------~ 146 (1094)
|...+++||-+..++.|.+.+..+ .-...+.++|+.|+||||+|+.+++.+-... .. .
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv 90 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDV 90 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCce
Confidence 677788999998888888888633 2246788899999999999999998653211 00 1
Q ss_pred EEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCCh--HhHHHHhcCCCCCCCC
Q 001348 147 CFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKF--RQLEYLAGGLDRFGLG 224 (1094)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~g 224 (1094)
.++.. ... .++.++. .+...+. .....+++-++|+|+++.. +..+.|+..+......
T Consensus 91 ~eId~----a~~-~~Id~iR-~L~~~~~---------------~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~ 149 (624)
T PRK14959 91 VEIDG----ASN-RGIDDAK-RLKEAIG---------------YAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPAR 149 (624)
T ss_pred EEEec----ccc-cCHHHHH-HHHHHHH---------------hhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCC
Confidence 11100 000 1111111 1111110 0112356678999999665 4466666655443445
Q ss_pred ceEEEEeCC-hhhhhhc-CcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCc-hHHHHHhhhh
Q 001348 225 SRIIVTSRD-KQVLEKY-GVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNP-LAIKVLASFF 299 (1094)
Q Consensus 225 srIiiTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlP-Lal~~lg~~L 299 (1094)
..+|++|.+ ..+...+ .....++++.++.++..+.+...+...... --.+.++.|++.++|.+ .|+..+...+
T Consensus 150 ~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~--id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 150 VTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVD--YDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred EEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 566665655 3443321 223678999999999999888866433221 12345678888899854 6777665444
No 124
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.84 E-value=0.00021 Score=84.83 Aligned_cols=180 Identities=13% Similarity=0.161 Sum_probs=100.0
Q ss_pred CCCCe-eehhHH--HHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccc--eEEeeechhhhccCCChHH
Q 001348 90 DFEGL-IGLDAR--IERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFES--KCFMANVREESEKGGGLVH 164 (1094)
Q Consensus 90 ~~~~~-vGr~~~--~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~~~~~~~~~~ 164 (1094)
..+.| +|-..+ ...+..+.........-+.|+|..|+|||+||+++++.+..++.. ..|+. . .+
T Consensus 120 tfd~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~-~----------~~ 188 (450)
T PRK00149 120 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT-S----------EK 188 (450)
T ss_pred cccccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE-H----------HH
Confidence 33444 464443 333333332222234568999999999999999999988776533 23332 1 12
Q ss_pred HHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCCh---H-hHHHHhcCCCC-CCCCceEEEEeCChh----
Q 001348 165 LRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKF---R-QLEYLAGGLDR-FGLGSRIIVTSRDKQ---- 235 (1094)
Q Consensus 165 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~---~-~~~~l~~~~~~-~~~gsrIiiTTR~~~---- 235 (1094)
+...+...+... ....+++.++. .-+|||||++.. + ..+.+...+.. ...|..||+||....
T Consensus 189 ~~~~~~~~~~~~--------~~~~~~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~ 259 (450)
T PRK00149 189 FTNDFVNALRNN--------TMEEFKEKYRS-VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELP 259 (450)
T ss_pred HHHHHHHHHHcC--------cHHHHHHHHhc-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHH
Confidence 233333333211 13344455553 447889999542 1 12233222211 123456788776431
Q ss_pred -----hhhhcCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchH
Q 001348 236 -----VLEKYGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLA 291 (1094)
Q Consensus 236 -----v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLa 291 (1094)
+...+.....+++++.+.++..+++.+.+-.... .--.++...|++.+.|..-.
T Consensus 260 ~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~--~l~~e~l~~ia~~~~~~~R~ 318 (450)
T PRK00149 260 GLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGI--DLPDEVLEFIAKNITSNVRE 318 (450)
T ss_pred HHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHcCcCCCHHH
Confidence 1222334468999999999999999988743221 12234566777777776543
No 125
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.84 E-value=2.5e-05 Score=83.82 Aligned_cols=91 Identities=15% Similarity=0.151 Sum_probs=61.0
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhc-cccceEEeeechhhhccCCChHHHHHHHHHhhhccCCcccCC------Cc-h
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISR-KFESKCFMANVREESEKGGGLVHLRDRLLSQILDESIRIETP------YI-P 186 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~------~~-~ 186 (1094)
-..++|.|++|+|||||++++|+.+.. +|+..+|+..+++.. .++.++++.+...+.......... .. .
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~---~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERP---EEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCC---ccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 458899999999999999999997644 689899988766532 467788888844443222221110 01 1
Q ss_pred HHHHHH-hcCCeEEEEEecCCCh
Q 001348 187 HYIRER-LQCMKVFIVLDDVNKF 208 (1094)
Q Consensus 187 ~~l~~~-L~~kr~LlVLDdv~~~ 208 (1094)
...+.. -.++++++++|++...
T Consensus 93 ~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHHHh
Confidence 122221 2579999999999554
No 126
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.83 E-value=4.6e-07 Score=104.58 Aligned_cols=178 Identities=22% Similarity=0.155 Sum_probs=120.6
Q ss_pred hhhhhcCCcccEEeccCCcccCccchhhccc-CccceeeccCcccccccchh----hc------cCCCcEEecCCCCCCC
Q 001348 608 STSICKLKSLLKLCLDNCSKLESFPEILEKM-GCLEDIDLEGTAITELPSSI----EY------LGGLTTLNLTGCSKLD 676 (1094)
Q Consensus 608 p~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l-~~L~~L~L~~~~i~~lp~~l----~~------l~~L~~L~L~~~~~~~ 676 (1094)
|-.|..+.+|++|.|.+|.+... ..+..+ ..|++|-. .|.+..+-.-| +. ...|.+.+.+.|. +.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~-L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNSPVWNKLATASFSYNR-LV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccchhhhhHhhhhcchhh-HH
Confidence 55677789999999999876541 111111 12333322 22222111111 11 1235555555543 44
Q ss_pred CCCccccCCCcccEEecCCccCccCCccccCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeCCCCCCCCCCccccCCCC
Q 001348 677 NLPENLGNLKSLKMLCANESAISQLPSSITNLNELQVVWCSGCRGLILPPSFSGLSYLTELDLSCCNLIEIPQDIGCLSL 756 (1094)
Q Consensus 677 ~lp~~l~~l~~L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~ 756 (1094)
.+-+++.-++.|+.|+|++|+++.+. .+..+++|++|+++.|....+|..-..-..|+.|.|++|.++++ .++.++.+
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL-~gie~Lks 255 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTL-RGIENLKS 255 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhh-hhHHhhhh
Confidence 55667777889999999999998875 78889999999999999877775322233499999999998886 35778999
Q ss_pred CCeeecCCCCCcccc--hhhcCCCCCCEEEccCCCCC
Q 001348 757 LRSLDLRKNNFEYLP--ASMKHLSKLKSLDLSCCNML 791 (1094)
Q Consensus 757 L~~L~L~~n~l~~lp--~~l~~l~~L~~L~L~~~~~l 791 (1094)
|+.||++.|-+.... ..+..|..|+.|+|.||++.
T Consensus 256 L~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 256 LYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 999999999766332 24567889999999999863
No 127
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.82 E-value=0.00023 Score=81.96 Aligned_cols=174 Identities=19% Similarity=0.276 Sum_probs=99.0
Q ss_pred CCCCCeeehhHHHHHHHhcccc-----------CCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhc
Q 001348 89 SDFEGLIGLDARIERIKSLLCI-----------GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESE 157 (1094)
Q Consensus 89 ~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~ 157 (1094)
....++.|.+..+++|.+.+.. +-...+-|.++|++|.|||++|+++++.....| +.....
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~f-----i~i~~s--- 213 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATF-----IRVVGS--- 213 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE-----EEEehH---
Confidence 3445789999999988886631 113467899999999999999999998765443 111110
Q ss_pred cCCChHHHHHHHHHhhhccCCcccCCCc-hHHHHHHhcCCeEEEEEecCCCh-------------H---hHHHHhcCCCC
Q 001348 158 KGGGLVHLRDRLLSQILDESIRIETPYI-PHYIRERLQCMKVFIVLDDVNKF-------------R---QLEYLAGGLDR 220 (1094)
Q Consensus 158 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~~L~~kr~LlVLDdv~~~-------------~---~~~~l~~~~~~ 220 (1094)
.+... ..++. ... ...+.......+.+|++|+++.. + .+..++.....
T Consensus 214 ------~l~~k----~~ge~-----~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~ 278 (398)
T PTZ00454 214 ------EFVQK----YLGEG-----PRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDG 278 (398)
T ss_pred ------HHHHH----hcchh-----HHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhc
Confidence 11110 00000 000 11122222456789999997532 0 12333333322
Q ss_pred C--CCCceEEEEeCChhhhhh-----cCcCeEEEccCCCHHHHHHHHHhhcccCCC-CCchHHHHHHHHHHHhCCCc
Q 001348 221 F--GLGSRIIVTSRDKQVLEK-----YGVDHIYEVEELNNIEALELFCKYAFRQNH-HPQDLMVISGRVVDYARGNP 289 (1094)
Q Consensus 221 ~--~~gsrIiiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~-~~~~~~~~~~~i~~~~~GlP 289 (1094)
+ ..+..||.||.....+.. -..+..++++..+.++..++|..+.-+... ..-++ .++++.+.|.-
T Consensus 279 ~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~----~~la~~t~g~s 351 (398)
T PTZ00454 279 FDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDL----EDFVSRPEKIS 351 (398)
T ss_pred cCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCH----HHHHHHcCCCC
Confidence 2 235678888875544321 134678999999999999999876533221 12233 34455565553
No 128
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.81 E-value=0.00016 Score=81.86 Aligned_cols=150 Identities=19% Similarity=0.238 Sum_probs=88.6
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHH
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRD 167 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~ 167 (1094)
|...++++|.+...+.+..++..+ .-..++.++|++|+||||+|+++++.....| .++.. .. .....+.
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~---~~i~~-~~-----~~~~~i~- 85 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEV---LFVNG-SD-----CRIDFVR- 85 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccc---eEecc-Cc-----ccHHHHH-
Confidence 667788999999999999988642 2356777899999999999999998763322 22221 11 1111221
Q ss_pred HHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCCh---HhHHHHhcCCCCCCCCceEEEEeCChhhh-hh-cCc
Q 001348 168 RLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKF---RQLEYLAGGLDRFGLGSRIIVTSRDKQVL-EK-YGV 242 (1094)
Q Consensus 168 ~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~---~~~~~l~~~~~~~~~gsrIiiTTR~~~v~-~~-~~~ 242 (1094)
..+.+.... ..+...+-++|+||++.. +..+.+.........++++|+||...... .. ...
T Consensus 86 ~~l~~~~~~--------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR 151 (316)
T PHA02544 86 NRLTRFAST--------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSR 151 (316)
T ss_pred HHHHHHHHh--------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhh
Confidence 111111100 001134457889999755 22233333233345678899988755322 11 122
Q ss_pred CeEEEccCCCHHHHHHHHHh
Q 001348 243 DHIYEVEELNNIEALELFCK 262 (1094)
Q Consensus 243 ~~~~~l~~L~~~ea~~Lf~~ 262 (1094)
...+.++..+.++..+++..
T Consensus 152 ~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 152 CRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred ceEEEeCCCCHHHHHHHHHH
Confidence 34677778888887776654
No 129
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.80 E-value=0.00074 Score=81.66 Aligned_cols=195 Identities=14% Similarity=0.117 Sum_probs=111.8
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccce----EEeeechhhhccCCChH
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESK----CFMANVREESEKGGGLV 163 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~----~~~~~~~~~~~~~~~~~ 163 (1094)
|...+++||.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++.+-...... .+-.+ +.-
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~c---------g~c 89 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLC---------GVG 89 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccC---------ccc
Confidence 7788899999999999999886432 345788999999999999999998754322100 00000 000
Q ss_pred HHHHHHHHhh----hccC-CcccCCCchHHHHHH-----hcCCeEEEEEecCCCh--HhHHHHhcCCCCCCCCceEEEEe
Q 001348 164 HLRDRLLSQI----LDES-IRIETPYIPHYIRER-----LQCMKVFIVLDDVNKF--RQLEYLAGGLDRFGLGSRIIVTS 231 (1094)
Q Consensus 164 ~l~~~ll~~l----~~~~-~~~~~~~~~~~l~~~-----L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTT 231 (1094)
.--+.+.... ..-+ ......+..+.+.+. ..+++-++|+|+++.. ...+.|+..+....+.+.+|++|
T Consensus 90 ~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 90 EHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred HHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 0000010000 0000 000000011112111 1234557899999655 34666666555445566666555
Q ss_pred -CChhhhhhc-CcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHHHH
Q 001348 232 -RDKQVLEKY-GVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAIKV 294 (1094)
Q Consensus 232 -R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 294 (1094)
....+...+ .....+++..++.++..+.+.+.+-..... --.+....|++.++|.+.-+..
T Consensus 170 te~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~--i~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 170 TEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE--VEDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred CChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 434443332 234789999999999999998876432221 1225567888999998865443
No 130
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.75 E-value=0.00075 Score=69.98 Aligned_cols=89 Identities=12% Similarity=0.162 Sum_probs=61.5
Q ss_pred CCeEEEEEecCCCh--HhHHHHhcCCCCCCCCceEEEEeCCh-hhhhhc-CcCeEEEccCCCHHHHHHHHHhhcccCCCC
Q 001348 195 CMKVFIVLDDVNKF--RQLEYLAGGLDRFGLGSRIIVTSRDK-QVLEKY-GVDHIYEVEELNNIEALELFCKYAFRQNHH 270 (1094)
Q Consensus 195 ~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~ 270 (1094)
+.+-++|+|+++.. +..+.|+..+....+.+.+|++|++. .+.... .....+++.+++.++..+.+.... .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~g----i- 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQG----I- 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHcC----C-
Confidence 45668999999664 34666666665555667777777654 232221 234689999999999998888761 1
Q ss_pred CchHHHHHHHHHHHhCCCchH
Q 001348 271 PQDLMVISGRVVDYARGNPLA 291 (1094)
Q Consensus 271 ~~~~~~~~~~i~~~~~GlPLa 291 (1094)
..+.+..+++.++|.|..
T Consensus 170 ---~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 170 ---SEEAAELLLALAGGSPGA 187 (188)
T ss_pred ---CHHHHHHHHHHcCCCccc
Confidence 135678999999998853
No 131
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.75 E-value=0.0004 Score=86.75 Aligned_cols=185 Identities=16% Similarity=0.131 Sum_probs=108.0
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhcccc--c-eEEee--ec----------
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFE--S-KCFMA--NV---------- 152 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~-~~~~~--~~---------- 152 (1094)
|...+++||.+..++.|...+..+. -...+.++|+.|+||||+|+.+++.+-.... . -|=.+ |.
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~ 89 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSL 89 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCC
Confidence 6677889999999999999986432 2356789999999999999999987632110 0 00000 00
Q ss_pred --hhhhc-cCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCCh--HhHHHHhcCCCCCCCCceE
Q 001348 153 --REESE-KGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKF--RQLEYLAGGLDRFGLGSRI 227 (1094)
Q Consensus 153 --~~~~~-~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrI 227 (1094)
.+... ...++.++. ++...+ ......+++-++|||+++.. ...+.|+..+......+.+
T Consensus 90 dv~eidaas~~~Vd~iR-~l~~~~---------------~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~f 153 (824)
T PRK07764 90 DVTEIDAASHGGVDDAR-ELRERA---------------FFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKF 153 (824)
T ss_pred cEEEecccccCCHHHHH-HHHHHH---------------HhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEE
Confidence 00000 001111111 111111 01112345557889999765 4466666666555556666
Q ss_pred EEEeCCh-hhhhh-cCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchH
Q 001348 228 IVTSRDK-QVLEK-YGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLA 291 (1094)
Q Consensus 228 iiTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLa 291 (1094)
|++|.+. .+... ......|++..++.++..+++.+.+-..... --.+....|++.++|.+..
T Consensus 154 Il~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~--id~eal~lLa~~sgGdlR~ 217 (824)
T PRK07764 154 IFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP--VEPGVLPLVIRAGGGSVRD 217 (824)
T ss_pred EEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 6655443 44433 2345789999999999988887765322221 1223456788888887743
No 132
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.74 E-value=5.4e-05 Score=85.01 Aligned_cols=92 Identities=14% Similarity=0.146 Sum_probs=64.2
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhcc-ccceEEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCC------c-h
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRK-FESKCFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPY------I-P 186 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~------~-~ 186 (1094)
-..++|+|++|.||||||+.+++.+... |+..+|+..+++.. .++.++++.++..+.....+..... . .
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~---~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERP---EEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCC---ccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 3578999999999999999999987665 99999998776532 5678899988766654433321111 0 1
Q ss_pred HHHHH-HhcCCeEEEEEecCCChH
Q 001348 187 HYIRE-RLQCMKVFIVLDDVNKFR 209 (1094)
Q Consensus 187 ~~l~~-~L~~kr~LlVLDdv~~~~ 209 (1094)
+..++ +-++++++|++|++....
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR~a 268 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITRLA 268 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhHHH
Confidence 11111 236799999999996543
No 133
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.74 E-value=0.00017 Score=90.45 Aligned_cols=152 Identities=18% Similarity=0.215 Sum_probs=86.8
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccc------cceEEeeechhhhc--c-
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKF------ESKCFMANVREESE--K- 158 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~~~~~~~~--~- 158 (1094)
+...+.++||+.+++++...|.... ..-+.++|++|+|||++|+.+++++...- ...+|..+...... .
T Consensus 178 ~~~l~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~ 255 (731)
T TIGR02639 178 NGKIDPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKY 255 (731)
T ss_pred cCCCCcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccc
Confidence 4455679999999999999886432 33467999999999999999999864421 23344333221110 0
Q ss_pred CCChHHHHHHHHHhhhccCCcccCCCchHHHHHHh-cCCeEEEEEecCCCh-----------HhHHHHhcCCCCCCCC-c
Q 001348 159 GGGLVHLRDRLLSQILDESIRIETPYIPHYIRERL-QCMKVFIVLDDVNKF-----------RQLEYLAGGLDRFGLG-S 225 (1094)
Q Consensus 159 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~-----------~~~~~l~~~~~~~~~g-s 225 (1094)
......- ...+.+.+ +.++.+|++|+++.. +.-+.|.+.+ ..| -
T Consensus 256 ~g~~e~~--------------------l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l---~~g~i 312 (731)
T TIGR02639 256 RGDFEER--------------------LKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL---SSGKL 312 (731)
T ss_pred cchHHHH--------------------HHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH---hCCCe
Confidence 0000111 11222222 235789999998532 1122233322 223 2
Q ss_pred eEEEEeCChhhh------hh-cCcCeEEEccCCCHHHHHHHHHhhc
Q 001348 226 RIIVTSRDKQVL------EK-YGVDHIYEVEELNNIEALELFCKYA 264 (1094)
Q Consensus 226 rIiiTTR~~~v~------~~-~~~~~~~~l~~L~~~ea~~Lf~~~a 264 (1094)
++|-+|...+.- .. ...-..++++.++.++..+++....
T Consensus 313 ~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 313 RCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred EEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 444444432210 01 1122578999999999999998654
No 134
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.72 E-value=0.00093 Score=78.62 Aligned_cols=184 Identities=14% Similarity=0.209 Sum_probs=106.1
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccc---cc-eEEee-echhhhc-----
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKF---ES-KCFMA-NVREESE----- 157 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F---~~-~~~~~-~~~~~~~----- 157 (1094)
|...++++|.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++.+-..= +. .|-.+ +.+....
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 6777899999999999999886432 236678999999999999999998753210 00 00000 0000000
Q ss_pred -------cCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCCh--HhHHHHhcCCCCCCCCceEE
Q 001348 158 -------KGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKF--RQLEYLAGGLDRFGLGSRII 228 (1094)
Q Consensus 158 -------~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIi 228 (1094)
...++.++. ++...+. .....+++-++|+|+++.. +..+.|...+........+|
T Consensus 92 ~~~i~g~~~~gid~ir-~i~~~l~---------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~I 155 (451)
T PRK06305 92 VLEIDGASHRGIEDIR-QINETVL---------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFF 155 (451)
T ss_pred eEEeeccccCCHHHHH-HHHHHHH---------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEE
Confidence 001111111 1111000 0011245667899998654 34555555554444466666
Q ss_pred EEeCC-hhhhhh-cCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCch
Q 001348 229 VTSRD-KQVLEK-YGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPL 290 (1094)
Q Consensus 229 iTTR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL 290 (1094)
++|.+ ..+... ......++++.+++++..+.+.+.+-..... --.+.+..++++++|.+-
T Consensus 156 l~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~--i~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 156 LATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE--TSREALLPIARAAQGSLR 217 (451)
T ss_pred EEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 66643 333322 2234689999999999988888765322211 123456788889988664
No 135
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=0.00034 Score=85.30 Aligned_cols=195 Identities=13% Similarity=0.106 Sum_probs=111.6
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHH
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRD 167 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~ 167 (1094)
|...+++||-+..++.|...+..+. -...+.++|+.|+||||+|+.+++.+.......-+-. .+.....+
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~---------c~~c~~c~ 81 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRP---------CGTCEMCR 81 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC---------CccCHHHH
Confidence 6677899999999999998886432 2456789999999999999999987642111000000 01111111
Q ss_pred HHHHhhhcc----CC-cccCCCchHHHHHHh-----cCCeEEEEEecCCCh--HhHHHHhcCCCCCCCCceEEEEeCCh-
Q 001348 168 RLLSQILDE----SI-RIETPYIPHYIRERL-----QCMKVFIVLDDVNKF--RQLEYLAGGLDRFGLGSRIIVTSRDK- 234 (1094)
Q Consensus 168 ~ll~~l~~~----~~-~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~- 234 (1094)
.+....... +. .....+..+.+.+.+ ..++-++|+|+++.. +..+.|+..+......+.+|++|.+.
T Consensus 82 ~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~ 161 (585)
T PRK14950 82 AIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVH 161 (585)
T ss_pred HHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChh
Confidence 111110000 00 000000112222221 245668999999654 44666666555444566676666543
Q ss_pred hhhhh-cCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHHHH
Q 001348 235 QVLEK-YGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAIKV 294 (1094)
Q Consensus 235 ~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 294 (1094)
.+... ......++++.++.++....+.+.+....... -.+.+..+++.++|.+..+..
T Consensus 162 kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i--~~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 162 KVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINL--EPGALEAIARAATGSMRDAEN 220 (585)
T ss_pred hhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHH
Confidence 33322 22346788999999999988887764332211 235567888999998865443
No 136
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.70 E-value=0.00063 Score=82.71 Aligned_cols=183 Identities=13% Similarity=0.152 Sum_probs=106.7
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechh-------------
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVRE------------- 154 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~------------- 154 (1094)
|....++||.+..++.|...+..+. -.+.+.++|+.|+||||+|+.++..+-..-....+-.|...
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dviei 92 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEM 92 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEE
Confidence 6777889999999999999886432 34567799999999999999999865321000000000000
Q ss_pred -hhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCCh--HhHHHHhcCCCCCCCCceEEE-E
Q 001348 155 -ESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKF--RQLEYLAGGLDRFGLGSRIIV-T 230 (1094)
Q Consensus 155 -~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIii-T 230 (1094)
.... .++.++ +++...+. .....+++-++|+|+++.. ..+.+|+..+........+|+ |
T Consensus 93 daasn-~~vd~I-ReLie~~~---------------~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaT 155 (725)
T PRK07133 93 DAASN-NGVDEI-RELIENVK---------------NLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILAT 155 (725)
T ss_pred ecccc-CCHHHH-HHHHHHHH---------------hchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEc
Confidence 0000 011111 11111110 0112346668899999654 456677765554444555554 4
Q ss_pred eCChhhhhh-cCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCch
Q 001348 231 SRDKQVLEK-YGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPL 290 (1094)
Q Consensus 231 TR~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL 290 (1094)
|+...+... ......+++.+++.++..+.+...+-..... --.+.+..+++.++|.+-
T Consensus 156 te~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~--id~eAl~~LA~lS~GslR 214 (725)
T PRK07133 156 TEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENIS--YEKNALKLIAKLSSGSLR 214 (725)
T ss_pred CChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 444444433 2334689999999999998888765322211 112446778889988664
No 137
>PRK06620 hypothetical protein; Validated
Probab=97.68 E-value=0.00021 Score=75.40 Aligned_cols=130 Identities=13% Similarity=0.022 Sum_probs=74.0
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhcC
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQC 195 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~ 195 (1094)
+.+.|||++|+|||+||+++++.... .++... . . . . +..+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~~~-----~-~-~-----------------------~----~~~~- 84 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIKDI-----F-F-N-----------------------E----EILE- 84 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-----EEcchh-----h-h-c-----------------------h----hHHh-
Confidence 67899999999999999997765421 222100 0 0 0 0 0011
Q ss_pred CeEEEEEecCCChHhHHHHhcCCCC-CCCCceEEEEeCChh-------hhhhcCcCeEEEccCCCHHHHHHHHHhhcccC
Q 001348 196 MKVFIVLDDVNKFRQLEYLAGGLDR-FGLGSRIIVTSRDKQ-------VLEKYGVDHIYEVEELNNIEALELFCKYAFRQ 267 (1094)
Q Consensus 196 kr~LlVLDdv~~~~~~~~l~~~~~~-~~~gsrIiiTTR~~~-------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~ 267 (1094)
..-++++||++...+ ..+...+.. ...|..||+|++... +...+...-+++++.++.++..+++.+.+-..
T Consensus 85 ~~d~lliDdi~~~~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 85 KYNAFIIEDIENWQE-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred cCCEEEEeccccchH-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 234678899975433 122221111 134678999987442 22233344589999999999888887776422
Q ss_pred CCCCchHHHHHHHHHHHhCCC
Q 001348 268 NHHPQDLMVISGRVVDYARGN 288 (1094)
Q Consensus 268 ~~~~~~~~~~~~~i~~~~~Gl 288 (1094)
.. .--.++..-|++++.|-
T Consensus 164 ~l--~l~~ev~~~L~~~~~~d 182 (214)
T PRK06620 164 SV--TISRQIIDFLLVNLPRE 182 (214)
T ss_pred CC--CCCHHHHHHHHHHccCC
Confidence 11 11234455566655544
No 138
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.68 E-value=0.00069 Score=80.16 Aligned_cols=187 Identities=13% Similarity=0.132 Sum_probs=111.9
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhc-cccc--eEEee--------------
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISR-KFES--KCFMA-------------- 150 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~--~~~~~-------------- 150 (1094)
|...+++||-+...+.|...+..+. -..+..++|+.|.||||+|+.+++.+-. .... -|..+
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 6778899999999999999886432 3456689999999999999999987521 1000 01110
Q ss_pred -echhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCCh--HhHHHHhcCCCCCCCCceE
Q 001348 151 -NVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKF--RQLEYLAGGLDRFGLGSRI 227 (1094)
Q Consensus 151 -~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrI 227 (1094)
.... +.. .++.++...+ ..... ....+++-++|+|+++.. +..++|+..+....+.+++
T Consensus 89 ~elda-as~-~gId~IReli-e~~~~---------------~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~F 150 (535)
T PRK08451 89 IEMDA-ASN-RGIDDIRELI-EQTKY---------------KPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKF 150 (535)
T ss_pred EEecc-ccc-cCHHHHHHHH-HHHhh---------------CcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEE
Confidence 0000 000 1222222111 11000 001245668899999665 4466666665555566777
Q ss_pred EEEeCChh-hhhh-cCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHHHHH
Q 001348 228 IVTSRDKQ-VLEK-YGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAIKVL 295 (1094)
Q Consensus 228 iiTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 295 (1094)
|++|.+.. +... ......+++.+++.++..+.+.+.+-...... -.+.+..|++.++|.+--+..+
T Consensus 151 IL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i--~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 151 ILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSY--EPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred EEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHHHHHH
Confidence 77776642 2221 12347899999999999988877664322211 2355678888999988544333
No 139
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.67 E-value=0.00099 Score=78.91 Aligned_cols=193 Identities=13% Similarity=0.079 Sum_probs=107.7
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhcc---c--cceEEeeechhhhc-cCCC
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRK---F--ESKCFMANVREESE-KGGG 161 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---F--~~~~~~~~~~~~~~-~~~~ 161 (1094)
|....+++|-+.-++.+.+.+..+. -.....++|+.|+||||+|+.++..+-.. . ++.... +...... ...+
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~-nc~~i~~g~~~d 89 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCE-NCVEIDKGSFPD 89 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccH-HHHHHhcCCCCc
Confidence 6677889999999999999986432 24566789999999999999999865321 0 010000 0000000 0000
Q ss_pred hHHHHHHHHHhhhccCCcccCCCchHHHHHH-----hcCCeEEEEEecCCCh--HhHHHHhcCCCCCCCCceEEEEeCC-
Q 001348 162 LVHLRDRLLSQILDESIRIETPYIPHYIRER-----LQCMKVFIVLDDVNKF--RQLEYLAGGLDRFGLGSRIIVTSRD- 233 (1094)
Q Consensus 162 ~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~-----L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~- 233 (1094)
+.. + . .......+..+.+.+. ..+++-++|+|+++.. ...+.|+..+....+...+|++|.+
T Consensus 90 ~~e--------i-d-aas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~ 159 (486)
T PRK14953 90 LIE--------I-D-AASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEY 159 (486)
T ss_pred EEE--------E-e-CccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCH
Confidence 000 0 0 0000000001222222 2346679999999655 3456666555544445556555543
Q ss_pred hhhhhh-cCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHHHH
Q 001348 234 KQVLEK-YGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAIKV 294 (1094)
Q Consensus 234 ~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 294 (1094)
..+... ......+++.+++.++....+...+-..... --.+.+..+++.++|.+..+..
T Consensus 160 ~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~--id~~al~~La~~s~G~lr~al~ 219 (486)
T PRK14953 160 DKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE--YEEKALDLLAQASEGGMRDAAS 219 (486)
T ss_pred HHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 333322 2234678999999999988888766332211 1224456778888887654433
No 140
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.67 E-value=0.00065 Score=79.61 Aligned_cols=131 Identities=14% Similarity=0.166 Sum_probs=77.1
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhc
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQ 194 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 194 (1094)
..-+.|+|+.|+|||+||+++++.+......++|+.. ..+...+...+... ....+++.++
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~-----------~~f~~~~~~~l~~~--------~~~~f~~~~~ 201 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS-----------ELFTEHLVSAIRSG--------EMQRFRQFYR 201 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH-----------HHHHHHHHHHHhcc--------hHHHHHHHcc
Confidence 3568899999999999999999987654333445531 22333333333211 1233444444
Q ss_pred CCeEEEEEecCCChH----hHHHHhcCCCC-CCCCceEEEEeCCh-hh--------hhhcCcCeEEEccCCCHHHHHHHH
Q 001348 195 CMKVFIVLDDVNKFR----QLEYLAGGLDR-FGLGSRIIVTSRDK-QV--------LEKYGVDHIYEVEELNNIEALELF 260 (1094)
Q Consensus 195 ~kr~LlVLDdv~~~~----~~~~l~~~~~~-~~~gsrIiiTTR~~-~v--------~~~~~~~~~~~l~~L~~~ea~~Lf 260 (1094)
. .-+|++||+.... ..+.+...+.. ...|..||+||... .. ...+.....+++.+++.++..+++
T Consensus 202 ~-~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL 280 (445)
T PRK12422 202 N-VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFL 280 (445)
T ss_pred c-CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHH
Confidence 3 4478889985431 11222222111 12356788888542 21 122333468899999999999999
Q ss_pred Hhhcc
Q 001348 261 CKYAF 265 (1094)
Q Consensus 261 ~~~af 265 (1094)
.+.+-
T Consensus 281 ~~k~~ 285 (445)
T PRK12422 281 ERKAE 285 (445)
T ss_pred HHHHH
Confidence 88774
No 141
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.66 E-value=3.8e-05 Score=58.15 Aligned_cols=39 Identities=31% Similarity=0.513 Sum_probs=20.4
Q ss_pred CCCEEeCCCCCCCCCCccccCCCCCCeeecCCCCCcccc
Q 001348 733 YLTELDLSCCNLIEIPQDIGCLSLLRSLDLRKNNFEYLP 771 (1094)
Q Consensus 733 ~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp 771 (1094)
+|++|++++|+++++|..++.+++|+.|++++|+++.++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 455555555555555554555555555555555555444
No 142
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=2.2e-05 Score=82.14 Aligned_cols=173 Identities=20% Similarity=0.221 Sum_probs=90.3
Q ss_pred ccccceeecccccccc--cchhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccCcccc--cccchhhccCCCc
Q 001348 590 LAKLEYLDLGHCTILE--SISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEGTAIT--ELPSSIEYLGGLT 665 (1094)
Q Consensus 590 L~~L~~L~L~~~~~~~--~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~--~lp~~l~~l~~L~ 665 (1094)
.++++.|||.+|.+.. .+-.-+.+|+.|++|+|+.|++...+-..-..+.+|++|-|.|+.+. ...+.+..++.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 4556666666665432 12222345666666666665543322111123455666666666544 4445556666666
Q ss_pred EEecCCCCCCCCC----------Cc--cccCCCcccEEecCCccCccCCccccCCCCCcEEEccCCCCCCC--CCCCCCC
Q 001348 666 TLNLTGCSKLDNL----------PE--NLGNLKSLKMLCANESAISQLPSSITNLNELQVVWCSGCRGLIL--PPSFSGL 731 (1094)
Q Consensus 666 ~L~L~~~~~~~~l----------p~--~l~~l~~L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~~~~l--p~~l~~l 731 (1094)
.|.++.|+.-... |+ .+..++++..+..+-|.+..+ ++++..+.+..|..... -..+..+
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~------Fpnv~sv~v~e~PlK~~s~ek~se~~ 223 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRI------FPNVNSVFVCEGPLKTESSEKGSEPF 223 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhh------cccchheeeecCcccchhhcccCCCC
Confidence 6666665321100 00 011112222222222222222 34555555555543322 2235567
Q ss_pred CCCCEEeCCCCCCCCCC--ccccCCCCCCeeecCCCCCc
Q 001348 732 SYLTELDLSCCNLIEIP--QDIGCLSLLRSLDLRKNNFE 768 (1094)
Q Consensus 732 ~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~L~~n~l~ 768 (1094)
+.+-.|+|+.++|.++. +.+..+++|..|.+++|.+.
T Consensus 224 p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 224 PSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred CcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 77888999999987642 34778899999998888665
No 143
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.63 E-value=0.0011 Score=80.86 Aligned_cols=196 Identities=15% Similarity=0.085 Sum_probs=109.9
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccc-cceEEeeechhhhccCCChHHHH
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKF-ESKCFMANVREESEKGGGLVHLR 166 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~~~~~~~~~~l~ 166 (1094)
|.....++|.+..++.|..++..+. -...+.++|+.|+||||+|+.++..+-... +....-. .+.-..-
T Consensus 12 P~~f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~---------Cg~C~~C 81 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEP---------CGKCELC 81 (620)
T ss_pred CCcHhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCC---------CcccHHH
Confidence 6677889999999999999886432 235678999999999999999999754321 0000000 0101111
Q ss_pred HHHHHhhhc----cCC-cccCCCchHHHHHHh-----cCCeEEEEEecCCCh--HhHHHHhcCCCCCCCCceEEEEeCCh
Q 001348 167 DRLLSQILD----ESI-RIETPYIPHYIRERL-----QCMKVFIVLDDVNKF--RQLEYLAGGLDRFGLGSRIIVTSRDK 234 (1094)
Q Consensus 167 ~~ll~~l~~----~~~-~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~ 234 (1094)
+.+...... -+. .....+..+.+.+.+ .+++-++|+|+++.. +..+.|+..+........+|++|.+.
T Consensus 82 ~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~ 161 (620)
T PRK14948 82 RAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDP 161 (620)
T ss_pred HHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCCh
Confidence 111110000 000 000000111111111 245568899999765 45666666555434455555555443
Q ss_pred -hhhhh-cCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHHHHH
Q 001348 235 -QVLEK-YGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAIKVL 295 (1094)
Q Consensus 235 -~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 295 (1094)
.+... ......+++..++.++....+.+.+-...... -.+.+..+++.++|.+..+..+
T Consensus 162 ~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~i--s~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 162 QRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEI--EPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred hhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCCHHHHHHH
Confidence 33332 22346788899999998888877664322111 1245678888999987654433
No 144
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.61 E-value=0.00098 Score=84.42 Aligned_cols=154 Identities=16% Similarity=0.192 Sum_probs=87.9
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccc------cceEEeeechhhhcc---
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKF------ESKCFMANVREESEK--- 158 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~~~~~~~~~--- 158 (1094)
+...+.+|||+.++.++...|.... ..-+.++|.+|+||||+|+.+++++.... ...+|..+.......
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~ 260 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASV 260 (852)
T ss_pred CCCCCcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhccccc
Confidence 5556789999999999999886433 23456999999999999999999875432 122333322211100
Q ss_pred CCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCChH-------h--HHH-HhcCCCCCCCC-ceE
Q 001348 159 GGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKFR-------Q--LEY-LAGGLDRFGLG-SRI 227 (1094)
Q Consensus 159 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-------~--~~~-l~~~~~~~~~g-srI 227 (1094)
......-.++++.+ +++ .+++++|++|+++... + ... |.+.+ ..| -++
T Consensus 261 ~ge~e~~lk~ii~e----------------~~~--~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l---~~G~l~~ 319 (852)
T TIGR03345 261 KGEFENRLKSVIDE----------------VKA--SPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPAL---ARGELRT 319 (852)
T ss_pred chHHHHHHHHHHHH----------------HHh--cCCCeEEEEeChHHhccCCCccccccHHHHhhHHh---hCCCeEE
Confidence 01111111111111 111 1468999999984431 1 112 33322 233 455
Q ss_pred EEEeCChhhhh-------hcCcCeEEEccCCCHHHHHHHHHhhc
Q 001348 228 IVTSRDKQVLE-------KYGVDHIYEVEELNNIEALELFCKYA 264 (1094)
Q Consensus 228 iiTTR~~~v~~-------~~~~~~~~~l~~L~~~ea~~Lf~~~a 264 (1094)
|-||...+.-. .......+.++.++.+++.+++....
T Consensus 320 IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 320 IAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLA 363 (852)
T ss_pred EEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHH
Confidence 55555432211 01123689999999999999975443
No 145
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.59 E-value=0.00094 Score=79.61 Aligned_cols=151 Identities=15% Similarity=0.228 Sum_probs=87.0
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHhcccc-c-eEEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHh
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQISRKFE-S-KCFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERL 193 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-~-~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 193 (1094)
..+.|||..|.|||.|++++++.+...+. . ++|+. ..++...+...+... ....+++++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit-----------aeef~~el~~al~~~--------~~~~f~~~y 375 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS-----------SEEFTNEFINSIRDG--------KGDSFRRRY 375 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-----------HHHHHHHHHHHHHhc--------cHHHHHHHh
Confidence 45899999999999999999998765432 2 23443 223333333333211 123344444
Q ss_pred cCCeEEEEEecCCCh---HhH-HHHhcCCCC-CCCCceEEEEeCCh---------hhhhhcCcCeEEEccCCCHHHHHHH
Q 001348 194 QCMKVFIVLDDVNKF---RQL-EYLAGGLDR-FGLGSRIIVTSRDK---------QVLEKYGVDHIYEVEELNNIEALEL 259 (1094)
Q Consensus 194 ~~kr~LlVLDdv~~~---~~~-~~l~~~~~~-~~~gsrIiiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~L 259 (1094)
++- =+|||||++.. +.+ +.|...+.. ...|..|||||+.. .+...+...-+++|+..+.+...++
T Consensus 376 ~~~-DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aI 454 (617)
T PRK14086 376 REM-DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAI 454 (617)
T ss_pred hcC-CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHH
Confidence 433 46888999543 222 222222211 13356788888753 1222344557899999999999999
Q ss_pred HHhhcccCCCCCchHHHHHHHHHHHhCCC
Q 001348 260 FCKYAFRQNHHPQDLMVISGRVVDYARGN 288 (1094)
Q Consensus 260 f~~~af~~~~~~~~~~~~~~~i~~~~~Gl 288 (1094)
+.+++-..... --.++..-|++.+.+.
T Consensus 455 L~kka~~r~l~--l~~eVi~yLa~r~~rn 481 (617)
T PRK14086 455 LRKKAVQEQLN--APPEVLEFIASRISRN 481 (617)
T ss_pred HHHHHHhcCCC--CCHHHHHHHHHhccCC
Confidence 99887433221 1234455555555444
No 146
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.58 E-value=0.002 Score=70.59 Aligned_cols=167 Identities=17% Similarity=0.191 Sum_probs=100.6
Q ss_pred CCCCeeehhHHHHHHHhccccCCCC-eEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHH
Q 001348 90 DFEGLIGLDARIERIKSLLCIGLPN-IQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDR 168 (1094)
Q Consensus 90 ~~~~~vGr~~~~~~l~~~L~~~~~~-~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ 168 (1094)
..+.+-+|+.++..+..++...+.. +..|.|+|-+|.|||.+.+++.+...- ..+|+.++.. +....+..+
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~---~~vw~n~~ec-----ft~~~lle~ 75 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL---ENVWLNCVEC-----FTYAILLEK 75 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC---cceeeehHHh-----ccHHHHHHH
Confidence 3457889999999999999765543 455699999999999999999987632 3578766554 556677777
Q ss_pred HHHhhh-ccCCcccC-C--Cc----hHHHHH--Hhc--CCeEEEEEecCCChHhHHHH-----hcCCCCCCCCceEEEEe
Q 001348 169 LLSQIL-DESIRIET-P--YI----PHYIRE--RLQ--CMKVFIVLDDVNKFRQLEYL-----AGGLDRFGLGSRIIVTS 231 (1094)
Q Consensus 169 ll~~l~-~~~~~~~~-~--~~----~~~l~~--~L~--~kr~LlVLDdv~~~~~~~~l-----~~~~~~~~~gsrIiiTT 231 (1094)
|+.++. ....+... . +. ...+++ ... ++.++||||+++...+.++. ..-..-.....-+|+++
T Consensus 76 IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils 155 (438)
T KOG2543|consen 76 ILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILS 155 (438)
T ss_pred HHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEe
Confidence 777774 22111111 1 00 122222 122 46999999999776553321 11100011112333333
Q ss_pred CCh---hhhhhcCcC--eEEEccCCCHHHHHHHHHhhc
Q 001348 232 RDK---QVLEKYGVD--HIYEVEELNNIEALELFCKYA 264 (1094)
Q Consensus 232 R~~---~v~~~~~~~--~~~~l~~L~~~ea~~Lf~~~a 264 (1094)
-.. .-...+|.. -++..+.-+.+|..+++.+.-
T Consensus 156 ~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 156 APSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred ccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 322 112223433 356778889999999997754
No 147
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.58 E-value=3.1e-06 Score=78.58 Aligned_cols=60 Identities=28% Similarity=0.412 Sum_probs=36.5
Q ss_pred CCCCCEEeCCCCCCCCCCccccCCCCCCeeecCCCCCcccchhhcCCCCCCEEEccCCCC
Q 001348 731 LSYLTELDLSCCNLIEIPQDIGCLSLLRSLDLRKNNFEYLPASMKHLSKLKSLDLSCCNM 790 (1094)
Q Consensus 731 l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~~~~ 790 (1094)
++.+++|+|++|.|+++|..+..++.|+.|+++.|.+...|..+..|.+|-.|+..+|..
T Consensus 76 f~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 76 FPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred cchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCcc
Confidence 345666666666666666666666666666666666666665555555666666655543
No 148
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.57 E-value=2.4e-05 Score=95.83 Aligned_cols=148 Identities=22% Similarity=0.225 Sum_probs=78.5
Q ss_pred CccceeeccCcccc--cccchhh-ccCCCcEEecCCCCCC-CCCCccccCCCcccEEecCCccCccCCccccCCCCCcEE
Q 001348 639 GCLEDIDLEGTAIT--ELPSSIE-YLGGLTTLNLTGCSKL-DNLPENLGNLKSLKMLCANESAISQLPSSITNLNELQVV 714 (1094)
Q Consensus 639 ~~L~~L~L~~~~i~--~lp~~l~-~l~~L~~L~L~~~~~~-~~lp~~l~~l~~L~~L~l~~~~i~~~p~~l~~l~~L~~L 714 (1094)
.+|++|+++|...- .-|..++ .||+|++|.+++-... ..+.....++++|..||+++++++.+ .++++|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 34555555553211 2222222 3566666666653322 12233345566777777777777666 566777777777
Q ss_pred EccCCCCCCCC--CCCCCCCCCCEEeCCCCCCCCCC-------ccccCCCCCCeeecCCCCCc--ccchhhcCCCCCCEE
Q 001348 715 WCSGCRGLILP--PSFSGLSYLTELDLSCCNLIEIP-------QDIGCLSLLRSLDLRKNNFE--YLPASMKHLSKLKSL 783 (1094)
Q Consensus 715 ~l~~~~~~~lp--~~l~~l~~L~~L~Ls~n~l~~lp-------~~l~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L 783 (1094)
.+.+-...... ..+.+|++|+.||+|.......+ +.-..+|+|+.||.+++.+. .+-..+..-|+|+.+
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i 280 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQI 280 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhh
Confidence 76665533222 12556777777777766444322 11234677777777777665 222233444555555
Q ss_pred EccC
Q 001348 784 DLSC 787 (1094)
Q Consensus 784 ~L~~ 787 (1094)
.+-+
T Consensus 281 ~~~~ 284 (699)
T KOG3665|consen 281 AALD 284 (699)
T ss_pred hhhh
Confidence 4443
No 149
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.57 E-value=0.00047 Score=66.71 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=21.1
Q ss_pred EEEEecCCCchhhHHHHHHHHHh
Q 001348 118 MGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 118 v~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
|.|+|++|+||||+|+.+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999875
No 150
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.0015 Score=70.95 Aligned_cols=195 Identities=21% Similarity=0.304 Sum_probs=118.4
Q ss_pred CCCeeehhHHHHHHHhccccC-----------CCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccC
Q 001348 91 FEGLIGLDARIERIKSLLCIG-----------LPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKG 159 (1094)
Q Consensus 91 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 159 (1094)
..++=|.+..+++|.+.+... -+.++-|.+||++|.|||-||++|+++.... |+..++.
T Consensus 150 Y~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At-----FIrvvgS----- 219 (406)
T COG1222 150 YEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT-----FIRVVGS----- 219 (406)
T ss_pred hhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce-----EEEeccH-----
Confidence 345778999999998876431 1347889999999999999999999976554 4443322
Q ss_pred CChHHHHHHHHHhhhccCCcccCCCchHHHHHHh----cCCeEEEEEecCCChH----------------hHHHHhcCCC
Q 001348 160 GGLVHLRDRLLSQILDESIRIETPYIPHYIRERL----QCMKVFIVLDDVNKFR----------------QLEYLAGGLD 219 (1094)
Q Consensus 160 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L----~~kr~LlVLDdv~~~~----------------~~~~l~~~~~ 219 (1094)
++.+...++. .+.+++.+ .+....|.+|.++... .+-+|+..++
T Consensus 220 --------ElVqKYiGEG--------aRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlD 283 (406)
T COG1222 220 --------ELVQKYIGEG--------ARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLD 283 (406)
T ss_pred --------HHHHHHhccc--------hHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhcc
Confidence 1222222222 33333333 2457888999884321 1444555566
Q ss_pred CCCC--CceEEEEeCChhhhh-----hcCcCeEEEccCCCHHHHHHHHHhhcccCCC-CCchHHHHHHHHHHHhCCCch-
Q 001348 220 RFGL--GSRIIVTSRDKQVLE-----KYGVDHIYEVEELNNIEALELFCKYAFRQNH-HPQDLMVISGRVVDYARGNPL- 290 (1094)
Q Consensus 220 ~~~~--gsrIiiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~-~~~~~~~~~~~i~~~~~GlPL- 290 (1094)
.|.+ .-+||..|--..++. --..++.++++.-+.+.-.++|.-|+-+-.. ..-++. .+++.+.|.-=
T Consensus 284 GFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e----~la~~~~g~sGA 359 (406)
T COG1222 284 GFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLE----LLARLTEGFSGA 359 (406)
T ss_pred CCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHH----HHHHhcCCCchH
Confidence 5554 357888776555433 2235789999988888888999988754332 223453 45555666542
Q ss_pred ---HHHHHhhhhc--C-C---CHHHHHHHHHHhh
Q 001348 291 ---AIKVLASFFH--R-K---SKLDWEIALQNLK 315 (1094)
Q Consensus 291 ---al~~lg~~L~--~-~---~~~~w~~~l~~l~ 315 (1094)
|+.+=|+++. . + +.+++..+.++.-
T Consensus 360 dlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~ 393 (406)
T COG1222 360 DLKAICTEAGMFAIRERRDEVTMEDFLKAVEKVV 393 (406)
T ss_pred HHHHHHHHHhHHHHHhccCeecHHHHHHHHHHHH
Confidence 2333344432 2 1 4566666666543
No 151
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.54 E-value=0.00072 Score=74.70 Aligned_cols=128 Identities=16% Similarity=0.194 Sum_probs=70.8
Q ss_pred EEEEEecCCCchhhHHHHHHHHHhcc--ccceEEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhc
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQISRK--FESKCFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQ 194 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~~~~~--F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 194 (1094)
-|.++|++|.||||+|+.++..+... .....|+.... .+ ++..+.+.... .....+.+.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~---------~~----l~~~~~g~~~~----~~~~~~~~a-- 120 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR---------DD----LVGQYIGHTAP----KTKEILKRA-- 120 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH---------HH----HhHhhcccchH----HHHHHHHHc--
Confidence 57899999999999999998865432 11122332211 11 12222221100 001222222
Q ss_pred CCeEEEEEecCCCh-----------HhHHHHhcCCCCCCCCceEEEEeCChhhhhhc--------CcCeEEEccCCCHHH
Q 001348 195 CMKVFIVLDDVNKF-----------RQLEYLAGGLDRFGLGSRIIVTSRDKQVLEKY--------GVDHIYEVEELNNIE 255 (1094)
Q Consensus 195 ~kr~LlVLDdv~~~-----------~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~--------~~~~~~~l~~L~~~e 255 (1094)
..-+|+||+++.. +..+.|.........+.+||.++.....-... .....++++.++.+|
T Consensus 121 -~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~ed 199 (284)
T TIGR02880 121 -MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAE 199 (284)
T ss_pred -cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHH
Confidence 3458889999632 22444555444444556777776543221111 124678999999999
Q ss_pred HHHHHHhhc
Q 001348 256 ALELFCKYA 264 (1094)
Q Consensus 256 a~~Lf~~~a 264 (1094)
..+++...+
T Consensus 200 l~~I~~~~l 208 (284)
T TIGR02880 200 LLVIAGLML 208 (284)
T ss_pred HHHHHHHHH
Confidence 999988876
No 152
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.54 E-value=5.8e-06 Score=76.85 Aligned_cols=87 Identities=21% Similarity=0.245 Sum_probs=58.4
Q ss_pred CCCCCCCEEeCCCCCCCCCCccccC-CCCCCeeecCCCCCcccchhhcCCCCCCEEEccCCCCCCCCCcccccccccccc
Q 001348 729 SGLSYLTELDLSCCNLIEIPQDIGC-LSLLRSLDLRKNNFEYLPASMKHLSKLKSLDLSCCNMLQSLPELPLQLKFLQAK 807 (1094)
Q Consensus 729 ~~l~~L~~L~Ls~n~l~~lp~~l~~-l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~~ 807 (1094)
.....|+..+|++|.+.++|..+.. ++.++.|+|++|.++.+|..+..++.|+.|+++.|++.. .|..+..|..|+.+
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~-~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNA-EPRVIAPLIKLDML 128 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCcccc-chHHHHHHHhHHHh
Confidence 3444566667777777777766543 447777788888888888777777888888888777554 33333337777777
Q ss_pred ccccccccC
Q 001348 808 DCKQLQSLP 816 (1094)
Q Consensus 808 ~c~~l~~~~ 816 (1094)
+.+.+...+
T Consensus 129 ds~~na~~e 137 (177)
T KOG4579|consen 129 DSPENARAE 137 (177)
T ss_pred cCCCCcccc
Confidence 776666544
No 153
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.53 E-value=0.0024 Score=76.99 Aligned_cols=191 Identities=12% Similarity=0.077 Sum_probs=110.1
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhcc-----ccceEEeeechhhhcc-CCC
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRK-----FESKCFMANVREESEK-GGG 161 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----F~~~~~~~~~~~~~~~-~~~ 161 (1094)
|...+++||-+..+++|...+..+ .-.+.+.++|+.|+||||+|+.+++.+-.. +.+.. ....+..... ..+
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~-C~~C~~i~~~~~~d 89 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIESN-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGE-CSSCKSIDNDNSLD 89 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCcc-chHHHHHHcCCCCC
Confidence 777889999999999999998643 234568899999999999999999865321 11000 0000000000 000
Q ss_pred hHHHHHHHHHhhhccCCcccCCCchHHHHH-----HhcCCeEEEEEecCCCh--HhHHHHhcCCCCCCCCceEEEEeCC-
Q 001348 162 LVHLRDRLLSQILDESIRIETPYIPHYIRE-----RLQCMKVFIVLDDVNKF--RQLEYLAGGLDRFGLGSRIIVTSRD- 233 (1094)
Q Consensus 162 ~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~-----~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~- 233 (1094)
+.. +.+. .....+....+.+ ...+++-++|+|+++.. .+++.|+..+....+...+|.+|.+
T Consensus 90 v~~--------idga--s~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~ 159 (563)
T PRK06647 90 VIE--------IDGA--SNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEV 159 (563)
T ss_pred eEE--------ecCc--ccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCCh
Confidence 000 0000 0000000111111 12346668899999655 4467777766654556666666544
Q ss_pred hhhhhh-cCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHH
Q 001348 234 KQVLEK-YGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAI 292 (1094)
Q Consensus 234 ~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 292 (1094)
..+... ......++...++.++..+.+.+.+...... --.+.+..|++.++|.+-.+
T Consensus 160 ~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~--id~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 160 HKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK--YEDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred HHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 333332 2234678999999999988888776433222 12345667888888877543
No 154
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.51 E-value=0.0054 Score=69.05 Aligned_cols=171 Identities=13% Similarity=0.183 Sum_probs=106.8
Q ss_pred CCCCCeeehhHHHHHHHhcccc--CCCCeEEEEEEecCCCchhhHHHHHHHHHhcccc--ceEEeeechhhhccCCChHH
Q 001348 89 SDFEGLIGLDARIERIKSLLCI--GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFE--SKCFMANVREESEKGGGLVH 164 (1094)
Q Consensus 89 ~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~~~~~~~~~~~~~~~ 164 (1094)
..+..++||+.++..+.+++.. +.+..+-+.|.|-+|.|||.+...++.+...... ..+++.+..- .....
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl-----~~~~a 221 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSL-----TEASA 221 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccc-----cchHH
Confidence 3556799999999999999864 4456788999999999999999999997654433 2466655421 22345
Q ss_pred HHHHHHHhhhccCCcccCC-CchHHHHHHhcCC--eEEEEEecCCChHh--HHHHhcCCCCC-CCCceEEEEeCChh---
Q 001348 165 LRDRLLSQILDESIRIETP-YIPHYIRERLQCM--KVFIVLDDVNKFRQ--LEYLAGGLDRF-GLGSRIIVTSRDKQ--- 235 (1094)
Q Consensus 165 l~~~ll~~l~~~~~~~~~~-~~~~~l~~~L~~k--r~LlVLDdv~~~~~--~~~l~~~~~~~-~~gsrIiiTTR~~~--- 235 (1094)
+...|...+.......... +....+.+..+.. .+|+|||.+|.... -..+...+.|. -+++|+|+.---..
T Consensus 222 iF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDl 301 (529)
T KOG2227|consen 222 IFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDL 301 (529)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhH
Confidence 6666666663322222111 1245555555443 58999999876532 22233333332 45677665432111
Q ss_pred ---hhhhcC-----cCeEEEccCCCHHHHHHHHHhhc
Q 001348 236 ---VLEKYG-----VDHIYEVEELNNIEALELFCKYA 264 (1094)
Q Consensus 236 ---v~~~~~-----~~~~~~l~~L~~~ea~~Lf~~~a 264 (1094)
.+..+. ....+.-++-+.++-.+++..+.
T Consensus 302 TdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl 338 (529)
T KOG2227|consen 302 TDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRL 338 (529)
T ss_pred HHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHH
Confidence 111111 23567788889999999998876
No 155
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.50 E-value=0.0017 Score=82.48 Aligned_cols=155 Identities=14% Similarity=0.128 Sum_probs=86.6
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccc------cceEEeeechhhhcc---
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKF------ESKCFMANVREESEK--- 158 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~~~~~~~~~--- 158 (1094)
+...+.+|||+.+++++...|.... ..-+.++|.+|+||||+|+.++.++.... ...+|..++......
T Consensus 174 ~~~l~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~ 251 (857)
T PRK10865 174 QGKLDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKY 251 (857)
T ss_pred cCCCCcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccch
Confidence 4455679999999999999886533 33566999999999999999999864421 233343333221100
Q ss_pred CCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCChH---------hHHHHhcCCCCCCCC-ceEE
Q 001348 159 GGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKFR---------QLEYLAGGLDRFGLG-SRII 228 (1094)
Q Consensus 159 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~---------~~~~l~~~~~~~~~g-srIi 228 (1094)
......-.+.++.+ +.+ .+++++|++|+++... +...++.+. ...| -++|
T Consensus 252 ~g~~e~~lk~~~~~----------------~~~--~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~--l~~g~l~~I 311 (857)
T PRK10865 252 RGEFEERLKGVLND----------------LAK--QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPA--LARGELHCV 311 (857)
T ss_pred hhhhHHHHHHHHHH----------------HHH--cCCCeEEEEecHHHhccCCCCccchhHHHHhcch--hhcCCCeEE
Confidence 01111111111111 111 2468999999985442 122333222 1233 3455
Q ss_pred EEeCChhhh------hh-cCcCeEEEccCCCHHHHHHHHHhhc
Q 001348 229 VTSRDKQVL------EK-YGVDHIYEVEELNNIEALELFCKYA 264 (1094)
Q Consensus 229 iTTR~~~v~------~~-~~~~~~~~l~~L~~~ea~~Lf~~~a 264 (1094)
-+|...+.- .. ...-..+.+...+.++..+++....
T Consensus 312 gaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 312 GATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred EcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 455444321 00 1112356788889999999886554
No 156
>PRK12377 putative replication protein; Provisional
Probab=97.49 E-value=0.0018 Score=69.56 Aligned_cols=36 Identities=22% Similarity=0.193 Sum_probs=29.2
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhccccceEEee
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMA 150 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 150 (1094)
...+.|+|.+|+|||+||.++++.+..+.-.+.|+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 457899999999999999999998776654455554
No 157
>PRK08116 hypothetical protein; Validated
Probab=97.49 E-value=0.00035 Score=76.35 Aligned_cols=102 Identities=24% Similarity=0.275 Sum_probs=56.7
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhcC
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQC 195 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~ 195 (1094)
..+.++|..|.|||.||.++++.+..+-..++|+. + .++...+....... .......+.+.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~-~----------~~ll~~i~~~~~~~-----~~~~~~~~~~~l~~ 178 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN-F----------PQLLNRIKSTYKSS-----GKEDENEIIRSLVN 178 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-H----------HHHHHHHHHHHhcc-----ccccHHHHHHHhcC
Confidence 45889999999999999999998776633344443 1 23333333222111 01113334455554
Q ss_pred CeEEEEEecCC--ChHhH--HHHhcCCCC-CCCCceEEEEeCCh
Q 001348 196 MKVFIVLDDVN--KFRQL--EYLAGGLDR-FGLGSRIIVTSRDK 234 (1094)
Q Consensus 196 kr~LlVLDdv~--~~~~~--~~l~~~~~~-~~~gsrIiiTTR~~ 234 (1094)
-. ||||||+. ....| +.+...+.. ...|..+||||...
T Consensus 179 ~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 179 AD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 44 89999993 22222 222222221 23466789998643
No 158
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.48 E-value=0.0028 Score=67.91 Aligned_cols=49 Identities=18% Similarity=0.181 Sum_probs=33.3
Q ss_pred HHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEe
Q 001348 101 IERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFM 149 (1094)
Q Consensus 101 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 149 (1094)
+..+.+....-......+.++|.+|.|||+||.++++.+..+-..++|+
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i 133 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLII 133 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 4444444432222345788999999999999999999876654444555
No 159
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.47 E-value=5.9e-05 Score=78.05 Aligned_cols=38 Identities=18% Similarity=0.263 Sum_probs=23.8
Q ss_pred cccccccceeecccccccccchh----hhhcCCcccEEeccC
Q 001348 587 IDCLAKLEYLDLGHCTILESIST----SICKLKSLLKLCLDN 624 (1094)
Q Consensus 587 i~~L~~L~~L~L~~~~~~~~lp~----~i~~l~~L~~L~L~~ 624 (1094)
+..+..+..++||+|.+...... .|.+-.+|+..+++.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd 67 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD 67 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh
Confidence 34467778888888877654333 344456666666665
No 160
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.47 E-value=0.003 Score=77.01 Aligned_cols=179 Identities=15% Similarity=0.205 Sum_probs=108.0
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhcc-----------------------cc
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRK-----------------------FE 144 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----------------------F~ 144 (1094)
|...+++||.+..++.|...+..+ .-...+.++|+.|+||||+|+.++..+-.. |+
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIATN-KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 667788999999999999988643 224568899999999999999999865311 11
Q ss_pred ceEEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCCh--HhHHHHhcCCCCCC
Q 001348 145 SKCFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKF--RQLEYLAGGLDRFG 222 (1094)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~ 222 (1094)
... + +. ... .++.++. .++.++... ...+++=++|+|+++.. ...+.|+..+....
T Consensus 92 ~~~-l-d~---~~~-~~vd~Ir-~li~~~~~~---------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp 149 (614)
T PRK14971 92 IHE-L-DA---ASN-NSVDDIR-NLIEQVRIP---------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPP 149 (614)
T ss_pred eEE-e-cc---ccc-CCHHHHH-HHHHHHhhC---------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCC
Confidence 111 1 00 000 1111221 111111100 01234557799998665 34666666555444
Q ss_pred CCceEEEEe-CChhhhhh-cCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchH
Q 001348 223 LGSRIIVTS-RDKQVLEK-YGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLA 291 (1094)
Q Consensus 223 ~gsrIiiTT-R~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLa 291 (1094)
..+.+|++| +...+... .....+++++.++.++....+.+.+-...... -.+.+..|++.++|..--
T Consensus 150 ~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i--~~~al~~La~~s~gdlr~ 218 (614)
T PRK14971 150 SYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITA--EPEALNVIAQKADGGMRD 218 (614)
T ss_pred CCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence 566665555 44444433 23457899999999999988887664332211 224567788888886643
No 161
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.47 E-value=0.0023 Score=77.44 Aligned_cols=191 Identities=11% Similarity=0.088 Sum_probs=106.6
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHH
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRD 167 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~ 167 (1094)
|...+++||.+..++.+.+.+..+. -.+.+.++|+.|+||||+|+.++..+-..-....- . .+.-..-+
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~-p---------C~~C~~C~ 80 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGE-P---------CNECEICK 80 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC-C---------CCccHHHH
Confidence 7788899999999999999986432 34667789999999999999999865321000000 0 00000000
Q ss_pred HHHHh----hhccCC-cccCCCchHHHHHH-----hcCCeEEEEEecCCCh--HhHHHHhcCCCCCCCCceEEEEe-CCh
Q 001348 168 RLLSQ----ILDESI-RIETPYIPHYIRER-----LQCMKVFIVLDDVNKF--RQLEYLAGGLDRFGLGSRIIVTS-RDK 234 (1094)
Q Consensus 168 ~ll~~----l~~~~~-~~~~~~~~~~l~~~-----L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTT-R~~ 234 (1094)
.+... +..-+. .....+..+.+.+. ..+++-++|+|+++.. ..+..|+..+........+|++| ...
T Consensus 81 ~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ 160 (559)
T PRK05563 81 AITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPH 160 (559)
T ss_pred HHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChh
Confidence 00000 000000 00000112222222 2346678899999755 45666766554433445555444 433
Q ss_pred hhhhh-cCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchH
Q 001348 235 QVLEK-YGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLA 291 (1094)
Q Consensus 235 ~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLa 291 (1094)
.+... ......++...++.++..+.+...+-...... -.+....|++.++|.+..
T Consensus 161 ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i--~~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 161 KIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEY--EDEALRLIARAAEGGMRD 216 (559)
T ss_pred hCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence 33332 22346788999999998888887663322211 124556777888887654
No 162
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.46 E-value=8.2e-06 Score=89.37 Aligned_cols=86 Identities=28% Similarity=0.351 Sum_probs=51.7
Q ss_pred CCCCCcEEEccCCCCC---CCCCCCCCCCCCCEEeCCCCCCCC---CCccccCCCCCCeeecCCCCCcc------cchhh
Q 001348 707 NLNELQVVWCSGCRGL---ILPPSFSGLSYLTELDLSCCNLIE---IPQDIGCLSLLRSLDLRKNNFEY------LPASM 774 (1094)
Q Consensus 707 ~l~~L~~L~l~~~~~~---~lp~~l~~l~~L~~L~Ls~n~l~~---lp~~l~~l~~L~~L~L~~n~l~~------lp~~l 774 (1094)
+..+|+.|-+.+|+.. .+...-.+++.|+.|++..|.+.. +-..-.+++.|+.|.|++|.+.+ +...-
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~ 397 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS 397 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence 3456666666666521 111122356778888888875542 33334567788888888775431 22333
Q ss_pred cCCCCCCEEEccCCCCCC
Q 001348 775 KHLSKLKSLDLSCCNMLQ 792 (1094)
Q Consensus 775 ~~l~~L~~L~L~~~~~l~ 792 (1094)
..+..|..|.|++|+.+.
T Consensus 398 c~~~~l~~lEL~n~p~i~ 415 (483)
T KOG4341|consen 398 CSLEGLEVLELDNCPLIT 415 (483)
T ss_pred ccccccceeeecCCCCch
Confidence 556778888888888653
No 163
>CHL00181 cbbX CbbX; Provisional
Probab=97.45 E-value=0.0024 Score=70.49 Aligned_cols=131 Identities=14% Similarity=0.156 Sum_probs=72.8
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHhcc-c-cceEEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHh
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQISRK-F-ESKCFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERL 193 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-F-~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 193 (1094)
..+.++|++|.||||+|+.+++..... + ...-|+...+ .. +.....+.... .....+.+.
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~---------~~----l~~~~~g~~~~----~~~~~l~~a- 121 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR---------DD----LVGQYIGHTAP----KTKEVLKKA- 121 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH---------HH----HHHHHhccchH----HHHHHHHHc-
Confidence 357899999999999999998864321 1 1111332111 11 22222211100 001122221
Q ss_pred cCCeEEEEEecCCCh-----------HhHHHHhcCCCCCCCCceEEEEeCChhhhhh--------cCcCeEEEccCCCHH
Q 001348 194 QCMKVFIVLDDVNKF-----------RQLEYLAGGLDRFGLGSRIIVTSRDKQVLEK--------YGVDHIYEVEELNNI 254 (1094)
Q Consensus 194 ~~kr~LlVLDdv~~~-----------~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~--------~~~~~~~~l~~L~~~ 254 (1094)
..-+|++|+++.. +..+.|...........+||.++....+... -.....++.+.++.+
T Consensus 122 --~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~ 199 (287)
T CHL00181 122 --MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPE 199 (287)
T ss_pred --cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHH
Confidence 2348899999642 3345555544444455677777764433211 023468999999999
Q ss_pred HHHHHHHhhccc
Q 001348 255 EALELFCKYAFR 266 (1094)
Q Consensus 255 ea~~Lf~~~af~ 266 (1094)
|..+++...+-.
T Consensus 200 el~~I~~~~l~~ 211 (287)
T CHL00181 200 ELLQIAKIMLEE 211 (287)
T ss_pred HHHHHHHHHHHH
Confidence 999998887643
No 164
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.45 E-value=0.00089 Score=85.18 Aligned_cols=150 Identities=17% Similarity=0.167 Sum_probs=84.1
Q ss_pred CCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhcc-c-----cceEEeeechhhhcc---CCC
Q 001348 91 FEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRK-F-----ESKCFMANVREESEK---GGG 161 (1094)
Q Consensus 91 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F-----~~~~~~~~~~~~~~~---~~~ 161 (1094)
.+.++||+.+++++.+.|.... ..-+.++|++|+|||++|+.++.++... - ...+|..+....... ...
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge 255 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGE 255 (821)
T ss_pred CCCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccH
Confidence 3568999999999999997543 2345699999999999999999976432 1 133444332211100 000
Q ss_pred hHHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCChH---------hHHHHhcCCCCCCCC-ceEEEEe
Q 001348 162 LVHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKFR---------QLEYLAGGLDRFGLG-SRIIVTS 231 (1094)
Q Consensus 162 ~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~---------~~~~l~~~~~~~~~g-srIiiTT 231 (1094)
...-. ...+.+.-..++++|++|+++... ....++.+. ...| -++|.+|
T Consensus 256 ~e~rl-------------------~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~--l~rg~l~~IgaT 314 (821)
T CHL00095 256 FEERL-------------------KRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPA--LARGELQCIGAT 314 (821)
T ss_pred HHHHH-------------------HHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHH--HhCCCcEEEEeC
Confidence 11111 111211123468999999984221 122222211 1222 3555555
Q ss_pred CChhhhh------h-cCcCeEEEccCCCHHHHHHHHHhh
Q 001348 232 RDKQVLE------K-YGVDHIYEVEELNNIEALELFCKY 263 (1094)
Q Consensus 232 R~~~v~~------~-~~~~~~~~l~~L~~~ea~~Lf~~~ 263 (1094)
...+... . ......+.++..+.++...++...
T Consensus 315 t~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 315 TLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred CHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 5443311 1 112356788999999988887643
No 165
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.45 E-value=0.0022 Score=72.79 Aligned_cols=160 Identities=16% Similarity=0.170 Sum_probs=94.0
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHh
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERL 193 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 193 (1094)
....+.|||..|.|||.|++++.+......+...++... .......++..+... ..+..++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~---------se~f~~~~v~a~~~~--------~~~~Fk~~y 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLT---------SEDFTNDFVKALRDN--------EMEKFKEKY 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEecc---------HHHHHHHHHHHHHhh--------hHHHHHHhh
Confidence 467899999999999999999999887777644333321 123333344443321 145566665
Q ss_pred cCCeEEEEEecCCChH----hHHHHhcCCCC-CCCCceEEEEeCCh---------hhhhhcCcCeEEEccCCCHHHHHHH
Q 001348 194 QCMKVFIVLDDVNKFR----QLEYLAGGLDR-FGLGSRIIVTSRDK---------QVLEKYGVDHIYEVEELNNIEALEL 259 (1094)
Q Consensus 194 ~~kr~LlVLDdv~~~~----~~~~l~~~~~~-~~~gsrIiiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~L 259 (1094)
.-=++++||++-.. .-+++...+.. ...|-.||+|++.. .+...+...-++++.+++.+....+
T Consensus 175 --~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ai 252 (408)
T COG0593 175 --SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAI 252 (408)
T ss_pred --ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHH
Confidence 33478899994321 12233332221 23344899988543 2223345567999999999999999
Q ss_pred HHhhcccCC--CCCchHHHHHHHHHHHhCCCchHH
Q 001348 260 FCKYAFRQN--HHPQDLMVISGRVVDYARGNPLAI 292 (1094)
Q Consensus 260 f~~~af~~~--~~~~~~~~~~~~i~~~~~GlPLal 292 (1094)
+.+.+-... .+.+...-+++.+.+-..-+.-|+
T Consensus 253 L~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL 287 (408)
T COG0593 253 LRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGAL 287 (408)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHH
Confidence 998764332 233333334444433333333333
No 166
>CHL00176 ftsH cell division protein; Validated
Probab=97.43 E-value=0.0013 Score=80.03 Aligned_cols=173 Identities=14% Similarity=0.211 Sum_probs=98.3
Q ss_pred CCCCeeehhHHHHHHHhcccc----------CCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccC
Q 001348 90 DFEGLIGLDARIERIKSLLCI----------GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKG 159 (1094)
Q Consensus 90 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 159 (1094)
..++++|.++..+++.+.+.. +..-.+-|.++|++|.|||++|++++...... |+....
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p-----~i~is~------ 249 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP-----FFSISG------ 249 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eeeccH------
Confidence 446789999887777766522 11224578999999999999999999865322 221100
Q ss_pred CChHHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCChH----------------hHHHHhcCCCCC--
Q 001348 160 GGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKFR----------------QLEYLAGGLDRF-- 221 (1094)
Q Consensus 160 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~-- 221 (1094)
.++..... +. ........+.+.....+.+|++||++... .+..++...+.+
T Consensus 250 ---s~f~~~~~----g~----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~ 318 (638)
T CHL00176 250 ---SEFVEMFV----GV----GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG 318 (638)
T ss_pred ---HHHHHHhh----hh----hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC
Confidence 01110000 00 00000223334445678999999995431 134444333322
Q ss_pred CCCceEEEEeCChhhhhh-----cCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCC
Q 001348 222 GLGSRIIVTSRDKQVLEK-----YGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARG 287 (1094)
Q Consensus 222 ~~gsrIiiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~G 287 (1094)
..+-.||.||.....+.. -..+..+.++..+.++..+++..++-..... .......+++.+.|
T Consensus 319 ~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~---~d~~l~~lA~~t~G 386 (638)
T CHL00176 319 NKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLS---PDVSLELIARRTPG 386 (638)
T ss_pred CCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccc---hhHHHHHHHhcCCC
Confidence 235566767766544331 1245788999999999999999887432111 11223456666666
No 167
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.41 E-value=0.00011 Score=90.27 Aligned_cols=129 Identities=25% Similarity=0.301 Sum_probs=79.7
Q ss_pred cccceeeccccccc-ccchhhhh-cCCcccEEeccCCccc-CccchhhcccCccceeeccCcccccccchhhccCCCcEE
Q 001348 591 AKLEYLDLGHCTIL-ESISTSIC-KLKSLLKLCLDNCSKL-ESFPEILEKMGCLEDIDLEGTAITELPSSIEYLGGLTTL 667 (1094)
Q Consensus 591 ~~L~~L~L~~~~~~-~~lp~~i~-~l~~L~~L~L~~~~~~-~~~p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L 667 (1094)
.+|++|+++|.... ...|..++ .||+|+.|.+++-... ..+-....++++|..||+++++++.+ .++++|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 46777777664432 22333343 3788888888774332 22445567788888888888888887 778888888888
Q ss_pred ecCCCCCCC-CCCccccCCCcccEEecCCccCccCC-------ccccCCCCCcEEEccCCC
Q 001348 668 NLTGCSKLD-NLPENLGNLKSLKMLCANESAISQLP-------SSITNLNELQVVWCSGCR 720 (1094)
Q Consensus 668 ~L~~~~~~~-~lp~~l~~l~~L~~L~l~~~~i~~~p-------~~l~~l~~L~~L~l~~~~ 720 (1094)
.+.+-.... .--..+.+|++|+.||++.......+ +.-..|++|+.|++++..
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 887643322 11224566777777777766443322 112335666666666544
No 168
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.40 E-value=0.0011 Score=84.62 Aligned_cols=156 Identities=13% Similarity=0.090 Sum_probs=86.6
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccc------cceEEeeechhhhccCCC
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKF------ESKCFMANVREESEKGGG 161 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~~~~~~~~~~~~ 161 (1094)
+...+.+|||+.+++++...|.... -.-+.++|.+|+|||++|+.++.++...+ ...+|..++......
T Consensus 169 ~~~~~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~--- 243 (852)
T TIGR03346 169 EGKLDPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAG--- 243 (852)
T ss_pred CCCCCcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhc---
Confidence 4445679999999999999986543 33455899999999999999999875432 223443332211000
Q ss_pred hHHHHHHHHHhhhccCCcccCCCchHHHHHHh-c-CCeEEEEEecCCChH---------hHHHHhcCCCCCCCC-ceEEE
Q 001348 162 LVHLRDRLLSQILDESIRIETPYIPHYIRERL-Q-CMKVFIVLDDVNKFR---------QLEYLAGGLDRFGLG-SRIIV 229 (1094)
Q Consensus 162 ~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L-~-~kr~LlVLDdv~~~~---------~~~~l~~~~~~~~~g-srIii 229 (1094)
.............+.+.+ + +++++|++|+++... +...++.+.- ..| -++|-
T Consensus 244 --------------~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l--~~g~i~~Ig 307 (852)
T TIGR03346 244 --------------AKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL--ARGELHCIG 307 (852)
T ss_pred --------------chhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh--hcCceEEEE
Confidence 000000000011122222 1 368999999985432 1222222221 223 34444
Q ss_pred EeCChhhhh-------hcCcCeEEEccCCCHHHHHHHHHhhc
Q 001348 230 TSRDKQVLE-------KYGVDHIYEVEELNNIEALELFCKYA 264 (1094)
Q Consensus 230 TTR~~~v~~-------~~~~~~~~~l~~L~~~ea~~Lf~~~a 264 (1094)
+|.....-. ....-..+.++..+.++..+++....
T Consensus 308 aTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 308 ATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred eCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 444333211 01122567899999999999887653
No 169
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.39 E-value=0.0015 Score=78.46 Aligned_cols=174 Identities=18% Similarity=0.203 Sum_probs=94.5
Q ss_pred CCCCCeeehhHHHHHHHhcccc----------CCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhcc
Q 001348 89 SDFEGLIGLDARIERIKSLLCI----------GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEK 158 (1094)
Q Consensus 89 ~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 158 (1094)
...++++|.+...+++.+++.. +..-.+-+.++|++|.|||++|++++......| +.....
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~----~~i~~~----- 122 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF----FSISGS----- 122 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCe----eeccHH-----
Confidence 3446788988877766655431 122345688999999999999999998653322 111110
Q ss_pred CCChHHHHHHHHHhhhccCCcccCCCc-hHHHHHHhcCCeEEEEEecCCChH----------------hHHHHhcCCCCC
Q 001348 159 GGGLVHLRDRLLSQILDESIRIETPYI-PHYIRERLQCMKVFIVLDDVNKFR----------------QLEYLAGGLDRF 221 (1094)
Q Consensus 159 ~~~~~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~ 221 (1094)
.+.... .+. .... ...+.......+.+|++|+++... .+..++...+.+
T Consensus 123 -----~~~~~~----~g~-----~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~ 188 (495)
T TIGR01241 123 -----DFVEMF----VGV-----GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF 188 (495)
T ss_pred -----HHHHHH----hcc-----cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccc
Confidence 111100 000 0000 122222233456899999985421 123333333322
Q ss_pred --CCCceEEEEeCChhhhh-----hcCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCC
Q 001348 222 --GLGSRIIVTSRDKQVLE-----KYGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGN 288 (1094)
Q Consensus 222 --~~gsrIiiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl 288 (1094)
..+-.||.||....... .-..+..++++..+.++..++|..+.-......+ .....+++.+.|.
T Consensus 189 ~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~---~~l~~la~~t~G~ 259 (495)
T TIGR01241 189 GTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD---VDLKAVARRTPGF 259 (495)
T ss_pred cCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc---hhHHHHHHhCCCC
Confidence 22445666665543222 1135678999999999999999887643222111 1124667777764
No 170
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.38 E-value=0.0011 Score=70.64 Aligned_cols=190 Identities=16% Similarity=0.210 Sum_probs=118.6
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhc--cccceEEeeechhhhccCCChH--
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISR--KFESKCFMANVREESEKGGGLV-- 163 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~F~~~~~~~~~~~~~~~~~~~~-- 163 (1094)
|...++++|-+..+..|.+.+.. ........+|++|.|||+-|++++..+-. -|.+++.=.|+... .|+.
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSde----rGisvv 105 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDE----RGISVV 105 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccc----ccccch
Confidence 77788999999999999998864 46778889999999999999999986533 35544433332221 2221
Q ss_pred HHHHHHHHhhhccCCcccCCCchHHHHHHhcCCe-EEEEEecCCCh--HhHHHHhcCCCCCCCCceEEEEeCChhhhh-h
Q 001348 164 HLRDRLLSQILDESIRIETPYIPHYIRERLQCMK-VFIVLDDVNKF--RQLEYLAGGLDRFGLGSRIIVTSRDKQVLE-K 239 (1094)
Q Consensus 164 ~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr-~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~-~ 239 (1094)
.....-.+++........ ..- -++ -.+|||+++.. +.|.+|......+...+|.|..+-.-.... .
T Consensus 106 r~Kik~fakl~~~~~~~~---------~~~-~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~p 175 (346)
T KOG0989|consen 106 REKIKNFAKLTVLLKRSD---------GYP-CPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRP 175 (346)
T ss_pred hhhhcCHHHHhhcccccc---------CCC-CCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChH
Confidence 111111111111110000 000 122 47889999775 568888888777777788666555443221 1
Q ss_pred -cCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCC-chHHHHH
Q 001348 240 -YGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGN-PLAIKVL 295 (1094)
Q Consensus 240 -~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~l 295 (1094)
......|.-+.|.+++..+-+...|-..+.+- ..+..+.|+++++|- --|+.++
T Consensus 176 i~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~--d~~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 176 LVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDI--DDDALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred HHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCcHHHHHHHH
Confidence 12336788999999999998888885444333 235667889998884 3444444
No 171
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.37 E-value=0.00013 Score=75.71 Aligned_cols=82 Identities=20% Similarity=0.260 Sum_probs=44.5
Q ss_pred CccEEEeccCCCCc-----cccccccccccceeeccccccccc----ch-------hhhhcCCcccEEeccCCcccCccc
Q 001348 569 NVRELYLRGTPIEY-----VPSSIDCLAKLEYLDLGHCTILES----IS-------TSICKLKSLLKLCLDNCSKLESFP 632 (1094)
Q Consensus 569 ~L~~L~L~~~~l~~-----lp~~i~~L~~L~~L~L~~~~~~~~----lp-------~~i~~l~~L~~L~L~~~~~~~~~p 632 (1094)
.+..++|+||.|.+ +...|.+-.+|+..++++- +++. +| ..+-++++|+..+||+|.+...+|
T Consensus 31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 67788888887762 3344556677888877753 2221 22 233445666666666665555544
Q ss_pred hhh----cccCccceeeccCccc
Q 001348 633 EIL----EKMGCLEDIDLEGTAI 651 (1094)
Q Consensus 633 ~~l----~~l~~L~~L~L~~~~i 651 (1094)
+.+ ..-+.|.+|.|++|.+
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCC
Confidence 432 2233444444444433
No 172
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.33 E-value=0.00024 Score=53.77 Aligned_cols=37 Identities=32% Similarity=0.487 Sum_probs=32.6
Q ss_pred CCCCeeecCCCCCcccchhhcCCCCCCEEEccCCCCC
Q 001348 755 SLLRSLDLRKNNFEYLPASMKHLSKLKSLDLSCCNML 791 (1094)
Q Consensus 755 ~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~~~~l 791 (1094)
++|++|++++|+|+.+|..+.+|++|+.|++++|++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 5799999999999999988999999999999999765
No 173
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.31 E-value=0.0042 Score=69.83 Aligned_cols=93 Identities=15% Similarity=0.111 Sum_probs=60.8
Q ss_pred CeEEEEEecCCCh--HhHHHHhcCCCCCCCCceEEEEeCChh-hhhh-cCcCeEEEccCCCHHHHHHHHHhhcccCCCCC
Q 001348 196 MKVFIVLDDVNKF--RQLEYLAGGLDRFGLGSRIIVTSRDKQ-VLEK-YGVDHIYEVEELNNIEALELFCKYAFRQNHHP 271 (1094)
Q Consensus 196 kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~ 271 (1094)
.|++ |+|+++.. +....|+..+.....++.+|+||.+.+ ++.. ..-...+.+..++.+++.+.+.... . ..
T Consensus 107 ~kv~-iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~-~~-- 181 (328)
T PRK05707 107 RKVV-LIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-P-ES-- 181 (328)
T ss_pred CeEE-EECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-c-cC--
Confidence 4555 67999764 445666655554455777777777764 3333 2335789999999999999987653 1 11
Q ss_pred chHHHHHHHHHHHhCCCchHHHHH
Q 001348 272 QDLMVISGRVVDYARGNPLAIKVL 295 (1094)
Q Consensus 272 ~~~~~~~~~i~~~~~GlPLal~~l 295 (1094)
..+.+..++..++|.|+....+
T Consensus 182 --~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 --DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred --ChHHHHHHHHHcCCCHHHHHHH
Confidence 1233457788999999765544
No 174
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.29 E-value=0.0023 Score=74.19 Aligned_cols=134 Identities=22% Similarity=0.194 Sum_probs=84.3
Q ss_pred HHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHHHHHhhhccCC
Q 001348 99 ARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDRLLSQILDESI 178 (1094)
Q Consensus 99 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~ 178 (1094)
.-+.++.+.+... ..++.|.|+-++||||+++.+.....+. .+|+......... ..+.+..+.
T Consensus 24 ~~~~~l~~~~~~~---~~i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~-~~l~d~~~~---------- 86 (398)
T COG1373 24 KLLPRLIKKLDLR---PFIILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDR-IELLDLLRA---------- 86 (398)
T ss_pred hhhHHHHhhcccC---CcEEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcch-hhHHHHHHH----------
Confidence 4445555555322 2299999999999999997666654444 4444322111111 111111111
Q ss_pred cccCCCchHHHHHHhcCCeEEEEEecCCChHhHHHHhcCCCCCCCCceEEEEeCChhhhhh------cCcCeEEEccCCC
Q 001348 179 RIETPYIPHYIRERLQCMKVFIVLDDVNKFRQLEYLAGGLDRFGLGSRIIVTSRDKQVLEK------YGVDHIYEVEELN 252 (1094)
Q Consensus 179 ~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~------~~~~~~~~l~~L~ 252 (1094)
+...-..++..++||.|.....|+..+..+...++. +|+||+-+..+... .|-...+++.+|+
T Consensus 87 ----------~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlS 155 (398)
T COG1373 87 ----------YIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLS 155 (398)
T ss_pred ----------HHHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCC
Confidence 111111178899999999999998888777665666 89999887765432 2445688999999
Q ss_pred HHHHHHHH
Q 001348 253 NIEALELF 260 (1094)
Q Consensus 253 ~~ea~~Lf 260 (1094)
-.|-..+-
T Consensus 156 F~Efl~~~ 163 (398)
T COG1373 156 FREFLKLK 163 (398)
T ss_pred HHHHHhhc
Confidence 99987654
No 175
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.29 E-value=0.0084 Score=67.05 Aligned_cols=192 Identities=13% Similarity=0.110 Sum_probs=107.5
Q ss_pred CCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhcc---------------ccceEEeeechhhh
Q 001348 92 EGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRK---------------FESKCFMANVREES 156 (1094)
Q Consensus 92 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------F~~~~~~~~~~~~~ 156 (1094)
++++|.+...+.+...+..+. -.....++|+.|+||+++|.++++.+-.. ++...|+.......
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~ 82 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQ 82 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccc
Confidence 568999999999999986432 24788999999999999999999865221 22223332110000
Q ss_pred ccCCChHHHHHHHHHhhh--ccCCcccCCCchHHHHHHh-----cCCeEEEEEecCCCh--HhHHHHhcCCCCCCCCceE
Q 001348 157 EKGGGLVHLRDRLLSQIL--DESIRIETPYIPHYIRERL-----QCMKVFIVLDDVNKF--RQLEYLAGGLDRFGLGSRI 227 (1094)
Q Consensus 157 ~~~~~~~~l~~~ll~~l~--~~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrI 227 (1094)
. .. +-...+.... ....+.-..+..+.+.+.+ .+++-++|+|+++.. .....|+..+.... .+.+
T Consensus 83 g--~~---~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 83 G--KL---ITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred c--cc---cchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 0 00 0000000000 0000000011123343333 345668888988655 33445554443333 3345
Q ss_pred EEEe-CChhhhhhc-CcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHHHHH
Q 001348 228 IVTS-RDKQVLEKY-GVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAIKVL 295 (1094)
Q Consensus 228 iiTT-R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 295 (1094)
|++| +...++... .....+++.+++.++..+.+....... . .......++..++|.|..+..+
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~--~---~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE--I---LNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc--c---chhHHHHHHHHcCCCHHHHHHH
Confidence 5554 444444432 345789999999999999998864211 1 1111357889999999765443
No 176
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.26 E-value=0.0014 Score=81.24 Aligned_cols=48 Identities=33% Similarity=0.421 Sum_probs=39.3
Q ss_pred CCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHh
Q 001348 91 FEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 91 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
.+.++||+.+++++...|..... .-+.++|.+|+|||++|+.+++++.
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~~--~n~LLvGppGvGKT~lae~la~~i~ 232 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRRK--NNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccCC--CCeEEECCCCCCHHHHHHHHHHHHH
Confidence 35699999999999998875322 3346899999999999999998753
No 177
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.24 E-value=0.0029 Score=76.93 Aligned_cols=189 Identities=13% Similarity=0.158 Sum_probs=105.8
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhcc--ccc-eEEeee-chhhh-------
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRK--FES-KCFMAN-VREES------- 156 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--F~~-~~~~~~-~~~~~------- 156 (1094)
|...+++||.+..++.|.+.+..+ .-...+.++|+.|+||||+|+.+++.+-.. ... -|-.+. .++..
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~ 90 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDTG-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDV 90 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCe
Confidence 777889999999999999988643 224567899999999999999999865321 000 000000 00000
Q ss_pred -----ccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCCh--HhHHHHhcCCCCCCCCceEEE
Q 001348 157 -----EKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKF--RQLEYLAGGLDRFGLGSRIIV 229 (1094)
Q Consensus 157 -----~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIii 229 (1094)
....++.++ +++...+.. ....+++-++|+|+++.. ...+.|+..+........+|+
T Consensus 91 ~eid~~s~~~v~~i-r~l~~~~~~---------------~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl 154 (576)
T PRK14965 91 FEIDGASNTGVDDI-RELRENVKY---------------LPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIF 154 (576)
T ss_pred eeeeccCccCHHHH-HHHHHHHHh---------------ccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEE
Confidence 000111111 111111100 011234557889999665 345666655544445666665
Q ss_pred EeC-Chhhhhh-cCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCc-hHHHHH
Q 001348 230 TSR-DKQVLEK-YGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNP-LAIKVL 295 (1094)
Q Consensus 230 TTR-~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlP-Lal~~l 295 (1094)
+|. ...+... ......++++.++.++....+...+-..... --.+....+++.++|.. .|+..+
T Consensus 155 ~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~--i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 155 ATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGIS--ISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred EeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 554 4444433 2234678899999999888777655322211 12244567888888865 344333
No 178
>PRK09183 transposase/IS protein; Provisional
Probab=97.23 E-value=0.0039 Score=67.87 Aligned_cols=28 Identities=29% Similarity=0.312 Sum_probs=23.1
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
...|.|+|++|+|||+||.++++....+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~ 129 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRA 129 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 3468899999999999999998865433
No 179
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.22 E-value=0.001 Score=80.36 Aligned_cols=53 Identities=23% Similarity=0.290 Sum_probs=44.6
Q ss_pred CCCCCCeeehhHHHHHHHhccccCC---CCeEEEEEEecCCCchhhHHHHHHHHHh
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGL---PNIQIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~---~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
|...++++|-+..++++..++.... ...++++|+|++|.||||+++.++..+.
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 7778899999999999999886432 3346899999999999999999998653
No 180
>PRK08181 transposase; Validated
Probab=97.22 E-value=0.0011 Score=72.19 Aligned_cols=35 Identities=17% Similarity=0.124 Sum_probs=27.6
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHhccccceEEee
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMA 150 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 150 (1094)
.-+.|+|++|.|||.||.++.+....+.-.+.|+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~ 141 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence 45899999999999999999997765544445553
No 181
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.19 E-value=0.0033 Score=79.39 Aligned_cols=174 Identities=18% Similarity=0.215 Sum_probs=93.1
Q ss_pred CCCCeeehhHHHHHHHhcccc-----------CCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhcc
Q 001348 90 DFEGLIGLDARIERIKSLLCI-----------GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEK 158 (1094)
Q Consensus 90 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 158 (1094)
..+++.|++..+++|.+.+.. +-...+.|.++|++|.||||||+++++.....| +.+ +..+....
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~---i~i-~~~~i~~~ 251 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISI-NGPEIMSK 251 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE---EEE-ecHHHhcc
Confidence 445689999999998887632 112346788999999999999999998765433 122 11111111
Q ss_pred CCCh-HHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCChH-------------hHHHHhcCCCCC-CC
Q 001348 159 GGGL-VHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKFR-------------QLEYLAGGLDRF-GL 223 (1094)
Q Consensus 159 ~~~~-~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-------------~~~~l~~~~~~~-~~ 223 (1094)
..+- ..-. ...+.........+|+||+++... ....+...+... ..
T Consensus 252 ~~g~~~~~l-------------------~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~ 312 (733)
T TIGR01243 252 YYGESEERL-------------------REIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGR 312 (733)
T ss_pred cccHHHHHH-------------------HHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccC
Confidence 0100 0111 112222223456789999985421 122333322221 22
Q ss_pred CceEEE-EeCChhhh-hhc----CcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCc
Q 001348 224 GSRIIV-TSRDKQVL-EKY----GVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNP 289 (1094)
Q Consensus 224 gsrIii-TTR~~~v~-~~~----~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlP 289 (1094)
+..++| ||....-. ..+ ..+..+.+...+.++..+++..+.-......+ .....+++.+.|.-
T Consensus 313 ~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d---~~l~~la~~t~G~~ 381 (733)
T TIGR01243 313 GRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAED---VDLDKLAEVTHGFV 381 (733)
T ss_pred CCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccc---cCHHHHHHhCCCCC
Confidence 334444 44433211 111 23467888888999988888865422111111 12355666677654
No 182
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.17 E-value=2.5e-05 Score=85.66 Aligned_cols=105 Identities=23% Similarity=0.301 Sum_probs=52.5
Q ss_pred CCCCcEEEccCCCCCC---CCCCCCCCCCCCEEeCCCCC-CCC--CCccccCCCCCCeeecCCCCCc---ccchhhcCCC
Q 001348 708 LNELQVVWCSGCRGLI---LPPSFSGLSYLTELDLSCCN-LIE--IPQDIGCLSLLRSLDLRKNNFE---YLPASMKHLS 778 (1094)
Q Consensus 708 l~~L~~L~l~~~~~~~---lp~~l~~l~~L~~L~Ls~n~-l~~--lp~~l~~l~~L~~L~L~~n~l~---~lp~~l~~l~ 778 (1094)
+..|+.|..+++.... +-..-.+..+|+.|-++.|+ +++ +..--.+.+.|+.|++.++... ++-..-.+++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 3455555555554210 11112345677777777764 332 1111234566777777766443 2222224566
Q ss_pred CCCEEEccCCCCCCCC--------Cccccccccccccccccc
Q 001348 779 KLKSLDLSCCNMLQSL--------PELPLQLKFLQAKDCKQL 812 (1094)
Q Consensus 779 ~L~~L~L~~~~~l~~l--------p~~~~~L~~L~~~~c~~l 812 (1094)
.|+.|.|++|...... ......|..|.+.+|+..
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i 414 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLI 414 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCc
Confidence 7777777777654322 123344555666666543
No 183
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.15 E-value=0.012 Score=69.64 Aligned_cols=154 Identities=18% Similarity=0.137 Sum_probs=84.6
Q ss_pred CCCCeeehhHHHHHHHhcc---cc-----CCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCC
Q 001348 90 DFEGLIGLDARIERIKSLL---CI-----GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGG 161 (1094)
Q Consensus 90 ~~~~~vGr~~~~~~l~~~L---~~-----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~ 161 (1094)
..+++.|.+...+.+.... .. +-...+-|.++|++|.|||.+|+++++.+.-.| +..+.........+
T Consensus 226 ~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~----~~l~~~~l~~~~vG 301 (489)
T CHL00195 226 KISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPL----LRLDVGKLFGGIVG 301 (489)
T ss_pred CHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEEEhHHhcccccC
Confidence 3467888887666655421 11 123457789999999999999999999764332 22111111100000
Q ss_pred h-HHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCChH--------------hHHHHhcCCCCCCCCce
Q 001348 162 L-VHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKFR--------------QLEYLAGGLDRFGLGSR 226 (1094)
Q Consensus 162 ~-~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--------------~~~~l~~~~~~~~~gsr 226 (1094)
- ....+ ..++..-...+++|++|+++..- .+..+.........+--
T Consensus 302 ese~~l~-------------------~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~ 362 (489)
T CHL00195 302 ESESRMR-------------------QMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVF 362 (489)
T ss_pred hHHHHHH-------------------HHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceE
Confidence 0 01111 11111112368899999986321 01122221121223344
Q ss_pred EEEEeCChhhhh-h----cCcCeEEEccCCCHHHHHHHHHhhccc
Q 001348 227 IIVTSRDKQVLE-K----YGVDHIYEVEELNNIEALELFCKYAFR 266 (1094)
Q Consensus 227 IiiTTR~~~v~~-~----~~~~~~~~l~~L~~~ea~~Lf~~~af~ 266 (1094)
||.||.+...+. . -..+..+.++..+.++..++|..+..+
T Consensus 363 vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 363 VVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred EEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 566776554322 1 135678999999999999999988744
No 184
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.14 E-value=0.044 Score=62.19 Aligned_cols=195 Identities=11% Similarity=0.130 Sum_probs=112.4
Q ss_pred CeEEEEEecCCCh-----------HhHHHHhcCCCCCCCCceEEEEeCChhhhhh----c--CcCeEEEccCCCHHHHHH
Q 001348 196 MKVFIVLDDVNKF-----------RQLEYLAGGLDRFGLGSRIIVTSRDKQVLEK----Y--GVDHIYEVEELNNIEALE 258 (1094)
Q Consensus 196 kr~LlVLDdv~~~-----------~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~----~--~~~~~~~l~~L~~~ea~~ 258 (1094)
+|-+||+|+.... .+|...+.. .+-..||++|-|...... + .+.+.+.+...+.+.|.+
T Consensus 148 ~~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~ 223 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQ 223 (431)
T ss_pred cCCEEEEcchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHH
Confidence 3789999998322 224443322 345679999987755432 2 345778999999999999
Q ss_pred HHHhhcccCCCC------------C------chHHHHHHHHHHHhCCCchHHHHHhhhhcC-CCH-HHHHHHHHHhhcCC
Q 001348 259 LFCKYAFRQNHH------------P------QDLMVISGRVVDYARGNPLAIKVLASFFHR-KSK-LDWEIALQNLKQIS 318 (1094)
Q Consensus 259 Lf~~~af~~~~~------------~------~~~~~~~~~i~~~~~GlPLal~~lg~~L~~-~~~-~~w~~~l~~l~~~~ 318 (1094)
+...+.-..... . .....-....++..||==.-|..+++.++. .++ +.-+.++.+
T Consensus 224 yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~q----- 298 (431)
T PF10443_consen 224 YVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIISQ----- 298 (431)
T ss_pred HHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHHH-----
Confidence 999887432110 0 123333456677788888888888887764 333 223333322
Q ss_pred CccHHHHHHHhhh-------cccHHhhhhhcccccccCCcCHHHHHHHHhCCC--ccccchhhhhccCceeEe--CCE--
Q 001348 319 GPEILAVLKISYD-------ELNWEAKNLFLDIACFFKGEDINFVTLILDNHY--SVHYGLSVLVDKSLVRIS--RNK-- 385 (1094)
Q Consensus 319 ~~~i~~~L~~sy~-------~L~~~~k~~fl~~a~f~~~~~~~~~~~il~~~~--~~~~~l~~L~~~sLi~~~--~~~-- 385 (1094)
.+.++.+.-+. ..+....+.+..+-.+-+...+.+-..++..-| ..+..+..|....||++. +|+
T Consensus 299 --sa~eI~k~fl~~~~~~~~~~~Wt~~QaW~LIk~Ls~~~~v~Y~~ll~~~lFk~~~E~~L~aLe~aeLItv~~~~G~p~ 376 (431)
T PF10443_consen 299 --SASEIRKMFLLDDSDDAKSLKWTREQAWYLIKLLSKNDEVPYNELLLSPLFKGNDETALRALEQAELITVTTDNGRPS 376 (431)
T ss_pred --HHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHhccCCcCcHHHHHcccccCCCChHHHHHHHHCCcEEEEecCCcCC
Confidence 22223332222 223333444444555556666666666666533 346689999999999998 443
Q ss_pred -EEe-eHHHHHHHHHHHh
Q 001348 386 -LEM-HDLLQDMGREIVS 401 (1094)
Q Consensus 386 -~~m-Hdli~~~~~~i~~ 401 (1094)
++- -++.+...+.++.
T Consensus 377 ~I~pGkPvy~aAF~~L~~ 394 (431)
T PF10443_consen 377 TIRPGKPVYRAAFKRLVN 394 (431)
T ss_pred eeECCChhHHHHHHHHhh
Confidence 221 2344444444443
No 185
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.14 E-value=0.002 Score=67.53 Aligned_cols=55 Identities=20% Similarity=0.353 Sum_probs=41.8
Q ss_pred CCCCCCeeehhHHHHHHHhcccc--CCCCeEEEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 88 SSDFEGLIGLDARIERIKSLLCI--GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
+...+.++|.|...+.|.+-... ......-|.+||..|.|||++++++.++...+
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 45557899999998888764321 22235567789999999999999999987664
No 186
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.06 E-value=0.019 Score=64.65 Aligned_cols=29 Identities=31% Similarity=0.430 Sum_probs=25.2
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
+.++|+|+|++|+||||++..++..+..+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~ 268 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK 268 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 46899999999999999999999876544
No 187
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.05 E-value=0.0012 Score=64.32 Aligned_cols=34 Identities=26% Similarity=0.348 Sum_probs=26.7
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHhccccceEEe
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFM 149 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 149 (1094)
+.+.|+|++|+||||+|+.++..+.......+++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~ 36 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYI 36 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEE
Confidence 4789999999999999999999766554234444
No 188
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.03 E-value=0.0091 Score=75.41 Aligned_cols=172 Identities=19% Similarity=0.254 Sum_probs=95.0
Q ss_pred CCCeeehhHHHHHHHhcccc-----------CCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccC
Q 001348 91 FEGLIGLDARIERIKSLLCI-----------GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKG 159 (1094)
Q Consensus 91 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 159 (1094)
..++.|.+...++|.+.+.. +-...+-|.++|++|.|||++|+++++.....| +.....+
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f----i~v~~~~----- 522 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF----IAVRGPE----- 522 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE----EEEehHH-----
Confidence 45688988888888776532 112346688999999999999999999765433 1111111
Q ss_pred CChHHHHHHHHHhhhccCCcccCCCchHHH-HHHhcCCeEEEEEecCCCh--------------HhHHHHhcCCCCC--C
Q 001348 160 GGLVHLRDRLLSQILDESIRIETPYIPHYI-RERLQCMKVFIVLDDVNKF--------------RQLEYLAGGLDRF--G 222 (1094)
Q Consensus 160 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l-~~~L~~kr~LlVLDdv~~~--------------~~~~~l~~~~~~~--~ 222 (1094)
++....++. ......+ ...-.....+|++|+++.. .....++..++.. .
T Consensus 523 ---------l~~~~vGes-----e~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~ 588 (733)
T TIGR01243 523 ---------ILSKWVGES-----EKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQEL 588 (733)
T ss_pred ---------HhhcccCcH-----HHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCC
Confidence 111111100 0001111 1122345789999998532 1133344433322 2
Q ss_pred CCceEEEEeCChhhhhh-c----CcCeEEEccCCCHHHHHHHHHhhcccCCC-CCchHHHHHHHHHHHhCCCc
Q 001348 223 LGSRIIVTSRDKQVLEK-Y----GVDHIYEVEELNNIEALELFCKYAFRQNH-HPQDLMVISGRVVDYARGNP 289 (1094)
Q Consensus 223 ~gsrIiiTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~af~~~~-~~~~~~~~~~~i~~~~~GlP 289 (1094)
.+--||.||.....+.. . ..+..+.++..+.++..++|..+.-+... +..++ ..+++.+.|.-
T Consensus 589 ~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l----~~la~~t~g~s 657 (733)
T TIGR01243 589 SNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDL----EELAEMTEGYT 657 (733)
T ss_pred CCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCH----HHHHHHcCCCC
Confidence 23445666655544321 1 35678999999999999999876532221 11223 34555666543
No 189
>PRK10536 hypothetical protein; Provisional
Probab=97.01 E-value=0.0023 Score=67.98 Aligned_cols=53 Identities=15% Similarity=0.154 Sum_probs=40.5
Q ss_pred CCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHH-H-hccccce
Q 001348 90 DFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQ-I-SRKFESK 146 (1094)
Q Consensus 90 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~-~-~~~F~~~ 146 (1094)
+...+.++......+...+.. ..+|.+.|++|.|||+||.+++.+ + .+.|+..
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kI 107 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRI 107 (262)
T ss_pred CCccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEE
Confidence 345678888888888887753 249999999999999999999884 4 4445433
No 190
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.01 E-value=0.00086 Score=67.08 Aligned_cols=99 Identities=19% Similarity=0.265 Sum_probs=46.3
Q ss_pred ccEEecCCccCccCCccccCCCCCcEEEccCCCCCCCCCCCCC-CCCCCEEeCCCCCCCCCCc--cccCCCCCCeeecCC
Q 001348 688 LKMLCANESAISQLPSSITNLNELQVVWCSGCRGLILPPSFSG-LSYLTELDLSCCNLIEIPQ--DIGCLSLLRSLDLRK 764 (1094)
Q Consensus 688 L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~~-l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~L~~ 764 (1094)
...+++++|.+..++ .|..++.|.+|.+++|....+.+.+.. +++|+.|.|.+|+|.++-+ .+..+|.|++|.+-+
T Consensus 44 ~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred cceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 334444444444331 233344444444444444433333332 3445555555555554321 234455666666666
Q ss_pred CCCcccch----hhcCCCCCCEEEccC
Q 001348 765 NNFEYLPA----SMKHLSKLKSLDLSC 787 (1094)
Q Consensus 765 n~l~~lp~----~l~~l~~L~~L~L~~ 787 (1094)
|..+.-.. .+..+|+|+.||..+
T Consensus 123 Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 123 NPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CchhcccCceeEEEEecCcceEeehhh
Confidence 65553331 234556666666554
No 191
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.00 E-value=0.0096 Score=66.06 Aligned_cols=154 Identities=19% Similarity=0.193 Sum_probs=82.1
Q ss_pred CCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccC-CChHHHHHHHHHhhhccCCcccCCCchHHHHH
Q 001348 113 PNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKG-GGLVHLRDRLLSQILDESIRIETPYIPHYIRE 191 (1094)
Q Consensus 113 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~-~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~ 191 (1094)
.-++.++|||++|.|||.+|+++++++.-.| +.....+..... ..-....++++.... +..+
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~----i~vsa~eL~sk~vGEsEk~IR~~F~~A~------------~~a~- 208 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEP----IVMSAGELESENAGEPGKLIRQRYREAA------------DIIK- 208 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCe----EEEEHHHhhcCcCCcHHHHHHHHHHHHH------------HHhh-
Confidence 4578999999999999999999999875543 222232222111 122233333322210 0000
Q ss_pred HhcCCeEEEEEecCCCh------------HhH--HHHhcCCC----------C----CCCCceEEEEeCChhhhhh-c--
Q 001348 192 RLQCMKVFIVLDDVNKF------------RQL--EYLAGGLD----------R----FGLGSRIIVTSRDKQVLEK-Y-- 240 (1094)
Q Consensus 192 ~L~~kr~LlVLDdv~~~------------~~~--~~l~~~~~----------~----~~~gsrIiiTTR~~~v~~~-~-- 240 (1094)
-+++.++|++|+++.. .++ ..|+...+ | ...+--||+||.+...+.. +
T Consensus 209 -~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlR 287 (413)
T PLN00020 209 -KKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIR 287 (413)
T ss_pred -ccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcC
Confidence 1457899999998421 111 22332111 1 2345678888877765332 1
Q ss_pred --CcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCch
Q 001348 241 --GVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPL 290 (1094)
Q Consensus 241 --~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL 290 (1094)
..+..| ...+.++-.+++..+.-+...+. .-..++++...|-|+
T Consensus 288 pGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~~----~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 288 DGRMEKFY--WAPTREDRIGVVHGIFRDDGVSR----EDVVKLVDTFPGQPL 333 (413)
T ss_pred CCCCCcee--CCCCHHHHHHHHHHHhccCCCCH----HHHHHHHHcCCCCCc
Confidence 122334 34577777788776653322221 333456666666654
No 192
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.95 E-value=0.0071 Score=70.30 Aligned_cols=106 Identities=25% Similarity=0.204 Sum_probs=61.1
Q ss_pred CcHHHHHHHHHHhhccChH----HHHHHHHHHHHHhhccCCCCCCCchhHHHHHHHHHHHHhcccccccCCCCCCeeeh-
Q 001348 23 GRVGDAFVVHEKQFREMPE----KVQKWRAVLTEASNLSGWDSKKIRPEAKLVDEIVKDILKKLNYFSVSSDFEGLIGL- 97 (1094)
Q Consensus 23 g~~~~~~~~~~~~~~~~~~----~~~~w~~al~~~a~~~g~~~~~~~~e~~~i~~i~~~v~~~l~~~~~~~~~~~~vGr- 97 (1094)
.++..+|.+...+-.-+.+ .++.++.||-++ ....+.+++++..|..+..... ....+-.+
T Consensus 3 ~~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLl~a-----------dV~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~ 68 (437)
T PRK00771 3 ESLRDALKKLAGKSRIDEKTVKEVVKDIQRALLQA-----------DVNVKLVKELSKSIKERALEEE---PPKGLTPRE 68 (437)
T ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHC-----------CCCHHHHHHHHHHHHHHHhccc---ccccCCcHH
Confidence 4566777776644222233 455666666554 3334556666666655543211 11111122
Q ss_pred ---hHHHHHHHhccccCC------CCeEEEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 98 ---DARIERIKSLLCIGL------PNIQIMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 98 ---~~~~~~l~~~L~~~~------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
..-.++|.+.+.... ..+.+|.++|.+|+||||+|..++..++.+
T Consensus 69 ~~~~~v~~~L~~~l~~~~~~~~~~~~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 69 HVIKIVYEELVKLLGEETEPLVLPLKPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred HHHHHHHHHHHHHhCCCccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 222345555554321 347899999999999999999999877654
No 193
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.90 E-value=0.0022 Score=67.60 Aligned_cols=261 Identities=15% Similarity=0.211 Sum_probs=133.5
Q ss_pred CCCCCCeeehhHHHHHHHhcccc---CCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHH
Q 001348 88 SSDFEGLIGLDARIERIKSLLCI---GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVH 164 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~ 164 (1094)
|....+|||.++-.++|.-.+.. .....--|.++|++|.||||||.-+++.+...+... .+..-++..++..
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~t-----sGp~leK~gDlaa 96 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKIT-----SGPALEKPGDLAA 96 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEec-----ccccccChhhHHH
Confidence 66778899999988888776643 123456788999999999999999999876553211 1111112122221
Q ss_pred HHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCChHh-HHHHh-cCCC--------CCCCCceE-------
Q 001348 165 LRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKFRQ-LEYLA-GGLD--------RFGLGSRI------- 227 (1094)
Q Consensus 165 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~-~~~l~-~~~~--------~~~~gsrI------- 227 (1094)
+ +. -|+..- .+.+|.+..... .++++ ++.. ..++++|.
T Consensus 97 i----Lt--------------------~Le~~D-VLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 97 I----LT--------------------NLEEGD-VLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred H----Hh--------------------cCCcCC-eEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 1 11 122222 234465543311 12211 1111 12344443
Q ss_pred ----EEEeCChhhhhhc--CcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHHHHHhhhhcC
Q 001348 228 ----IVTSRDKQVLEKY--GVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAIKVLASFFHR 301 (1094)
Q Consensus 228 ----iiTTR~~~v~~~~--~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg~~L~~ 301 (1094)
=-|||--.+..-+ ...-+.+++.-+.+|-.++..+.|-.-+ .+--.+-+.+|+++..|-|--..-+-+..+.
T Consensus 152 FTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~--i~i~~~~a~eIA~rSRGTPRIAnRLLrRVRD 229 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILG--IEIDEEAALEIARRSRGTPRIANRLLRRVRD 229 (332)
T ss_pred eeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhC--CCCChHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 3588865443221 1234678888899999999999883211 1223356789999999999654433333221
Q ss_pred CCHHHHHHHHHH--hhcCCCccHHHHHHHhhhcccHHhhhhhcccccccCCcC--HHHHHHHHhCC-Cccccch-hhhhc
Q 001348 302 KSKLDWEIALQN--LKQISGPEILAVLKISYDELNWEAKNLFLDIACFFKGED--INFVTLILDNH-YSVHYGL-SVLVD 375 (1094)
Q Consensus 302 ~~~~~w~~~l~~--l~~~~~~~i~~~L~~sy~~L~~~~k~~fl~~a~f~~~~~--~~~~~~il~~~-~~~~~~l-~~L~~ 375 (1094)
+..+-.. +...........|.+--.+|+...++.+.-+.-.+.|-. ++.+...+... ...+..+ --|++
T Consensus 230 -----fa~V~~~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EPyLiq 304 (332)
T COG2255 230 -----FAQVKGDGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEPYLIQ 304 (332)
T ss_pred -----HHHHhcCCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHhHHHHH
Confidence 1100000 000000123344444445666666666655554443322 33333333221 1111111 13677
Q ss_pred cCceeEe-CCE
Q 001348 376 KSLVRIS-RNK 385 (1094)
Q Consensus 376 ~sLi~~~-~~~ 385 (1094)
.+||+.. .|+
T Consensus 305 ~gfi~RTpRGR 315 (332)
T COG2255 305 QGFIQRTPRGR 315 (332)
T ss_pred hchhhhCCCcc
Confidence 7777655 444
No 194
>PRK06526 transposase; Provisional
Probab=96.87 E-value=0.0022 Score=69.36 Aligned_cols=28 Identities=25% Similarity=0.137 Sum_probs=23.7
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
.+-+.|+|++|.|||+||.++......+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~ 125 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQA 125 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHC
Confidence 4568999999999999999999875543
No 195
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.87 E-value=0.0021 Score=69.34 Aligned_cols=91 Identities=20% Similarity=0.283 Sum_probs=58.3
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHHHHHhh-hccCCc---ccCC-------
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDRLLSQI-LDESIR---IETP------- 183 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l-~~~~~~---~~~~------- 183 (1094)
-..++|.|.+|.||||||+.+++.++.+|+..+++.-+.+... .+.++.+.+...- .....- ..+.
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer~~---Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTR---EGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcH---HHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 3578999999999999999999999988888888877766443 2445555444321 100000 0011
Q ss_pred --CchHHHHHHh---cCCeEEEEEecCCCh
Q 001348 184 --YIPHYIRERL---QCMKVFIVLDDVNKF 208 (1094)
Q Consensus 184 --~~~~~l~~~L---~~kr~LlVLDdv~~~ 208 (1094)
...-.+.+++ +++.+|+|+||+...
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 0012244444 388999999999554
No 196
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.025 Score=66.62 Aligned_cols=164 Identities=20% Similarity=0.216 Sum_probs=91.4
Q ss_pred CCeeehhHHHHHHHhcccc-----------CCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechh-h-hcc
Q 001348 92 EGLIGLDARIERIKSLLCI-----------GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVRE-E-SEK 158 (1094)
Q Consensus 92 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~-~-~~~ 158 (1094)
+++=|.++-..+|.+.+.- +-...+-|..+|++|.||||+|+++++.-.-.|-.+ -.. . +.-
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv-----kgpEL~sk~ 508 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV-----KGPELFSKY 508 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeec-----cCHHHHHHh
Confidence 4455677777777755431 224578899999999999999999999766555322 110 0 000
Q ss_pred CCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCChH-------------hHHHHhcCCCCCCCCc
Q 001348 159 GGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKFR-------------QLEYLAGGLDRFGLGS 225 (1094)
Q Consensus 159 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-------------~~~~l~~~~~~~~~gs 225 (1094)
...-....++++.+.. +.-..+|.||.+|... .+..|+...+......
T Consensus 509 vGeSEr~ir~iF~kAR-------------------~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k 569 (693)
T KOG0730|consen 509 VGESERAIREVFRKAR-------------------QVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALK 569 (693)
T ss_pred cCchHHHHHHHHHHHh-------------------hcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccC
Confidence 0111122222222211 1235777777764321 2455555555444443
Q ss_pred eEEE---EeCChhhhhh-c---CcCeEEEccCCCHHHHHHHHHhhcccCCCCCc-hHHHHHH
Q 001348 226 RIIV---TSRDKQVLEK-Y---GVDHIYEVEELNNIEALELFCKYAFRQNHHPQ-DLMVISG 279 (1094)
Q Consensus 226 rIii---TTR~~~v~~~-~---~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~-~~~~~~~ 279 (1094)
.|+| |-|...+-.. + ..+..+.++.-+.+-..++|..++-+-..... ++.++++
T Consensus 570 ~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~ 631 (693)
T KOG0730|consen 570 NVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQ 631 (693)
T ss_pred cEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHH
Confidence 4444 3343333222 2 25688999999999999999999844332222 4444443
No 197
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.82 E-value=0.0018 Score=64.93 Aligned_cols=83 Identities=20% Similarity=0.197 Sum_probs=62.8
Q ss_pred CCCcEEEccCCCCCCCCCCCCCCCCCCEEeCCCCCCCCCCccccC-CCCCCeeecCCCCCcccch--hhcCCCCCCEEEc
Q 001348 709 NELQVVWCSGCRGLILPPSFSGLSYLTELDLSCCNLIEIPQDIGC-LSLLRSLDLRKNNFEYLPA--SMKHLSKLKSLDL 785 (1094)
Q Consensus 709 ~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~-l~~L~~L~L~~n~l~~lp~--~l~~l~~L~~L~L 785 (1094)
.+...+++++|....++. |..++.|.+|.|++|+|+.|-..+.. +++|+.|.|.+|++..+-+ .+..+|.|++|.+
T Consensus 42 d~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cccceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 456678888887666554 77788899999999999887666544 6678999999988876542 4667888888888
Q ss_pred cCCCCCC
Q 001348 786 SCCNMLQ 792 (1094)
Q Consensus 786 ~~~~~l~ 792 (1094)
-+|+...
T Consensus 121 l~Npv~~ 127 (233)
T KOG1644|consen 121 LGNPVEH 127 (233)
T ss_pred cCCchhc
Confidence 8887543
No 198
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.82 E-value=0.0023 Score=73.35 Aligned_cols=55 Identities=24% Similarity=0.216 Sum_probs=42.1
Q ss_pred CCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhc--cccceEEee
Q 001348 92 EGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISR--KFESKCFMA 150 (1094)
Q Consensus 92 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~F~~~~~~~ 150 (1094)
.++++.+..++.+...|.. .+.|.++|++|+|||++|+++++.+.. .|....|+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~----~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt 231 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI----KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ 231 (459)
T ss_pred hcccCCHHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe
Confidence 4578888889999888853 357888999999999999999997644 344444443
No 199
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.79 E-value=0.017 Score=62.80 Aligned_cols=193 Identities=12% Similarity=0.076 Sum_probs=106.7
Q ss_pred CCeeehh---HHHHHHHhccccC-CCCeEEEEEEecCCCchhhHHHHHHHHHhccccc------eEEeeechhhhccCCC
Q 001348 92 EGLIGLD---ARIERIKSLLCIG-LPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFES------KCFMANVREESEKGGG 161 (1094)
Q Consensus 92 ~~~vGr~---~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~------~~~~~~~~~~~~~~~~ 161 (1094)
+..||-. ..+++|++++... ....+-+.|+|.+|+|||++++++....-..++. ++.+. + .. ..+
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq-~---P~-~p~ 108 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ-M---PP-EPD 108 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe-c---CC-CCC
Confidence 3455544 3456667766543 3456779999999999999999999864444432 22222 1 12 267
Q ss_pred hHHHHHHHHHhhhccCCcccCCCc-hHHHHHHhcC-CeEEEEEecCCChH-----hHHHH---hcCCCCCCCCceEEEEe
Q 001348 162 LVHLRDRLLSQILDESIRIETPYI-PHYIRERLQC-MKVFIVLDDVNKFR-----QLEYL---AGGLDRFGLGSRIIVTS 231 (1094)
Q Consensus 162 ~~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~~L~~-kr~LlVLDdv~~~~-----~~~~l---~~~~~~~~~gsrIiiTT 231 (1094)
...+...|+.++............ ...+.+.|+. +-=+||+|.+.+.- +-..+ +..+...-.-+-|.+-|
T Consensus 109 ~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt 188 (302)
T PF05621_consen 109 ERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGT 188 (302)
T ss_pred hHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEecc
Confidence 788999999998755433333333 3344455544 34488999996531 11111 11222222334566666
Q ss_pred CCh--------hhhhhcCcCeEEEccCCCHHH-HHHHHHhhcc--c-CCCCCchHHHHHHHHHHHhCCCchHH
Q 001348 232 RDK--------QVLEKYGVDHIYEVEELNNIE-ALELFCKYAF--R-QNHHPQDLMVISGRVVDYARGNPLAI 292 (1094)
Q Consensus 232 R~~--------~v~~~~~~~~~~~l~~L~~~e-a~~Lf~~~af--~-~~~~~~~~~~~~~~i~~~~~GlPLal 292 (1094)
++- +++.. -..+.++....++ ...|+..... . .....-...++++.|...++|+.=-+
T Consensus 189 ~~A~~al~~D~QLa~R---F~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l 258 (302)
T PF05621_consen 189 REAYRALRTDPQLASR---FEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGEL 258 (302)
T ss_pred HHHHHHhccCHHHHhc---cCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHH
Confidence 543 22222 2456666665544 3344432211 1 11111244678899999999986443
No 200
>PRK06921 hypothetical protein; Provisional
Probab=96.73 E-value=0.0023 Score=69.86 Aligned_cols=36 Identities=22% Similarity=0.295 Sum_probs=29.0
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhcc-ccceEEee
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRK-FESKCFMA 150 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~ 150 (1094)
...+.++|..|+|||+||.++++.+..+ -..++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 4678999999999999999999987665 34455664
No 201
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.73 E-value=0.04 Score=69.94 Aligned_cols=51 Identities=31% Similarity=0.473 Sum_probs=39.8
Q ss_pred CeeehhHHHHHHHhcccc----CCCCeEEEEEEecCCCchhhHHHHHHHHHhccc
Q 001348 93 GLIGLDARIERIKSLLCI----GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKF 143 (1094)
Q Consensus 93 ~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 143 (1094)
..+|.+...++|.+.+.. +....+++.++|++|+|||++|+++++.+...|
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 478999888888876532 222345899999999999999999999876554
No 202
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.72 E-value=0.018 Score=72.60 Aligned_cols=48 Identities=23% Similarity=0.299 Sum_probs=37.7
Q ss_pred CCeeehhHHHHHHHhccccC------CCC-eEEEEEEecCCCchhhHHHHHHHHH
Q 001348 92 EGLIGLDARIERIKSLLCIG------LPN-IQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 92 ~~~vGr~~~~~~l~~~L~~~------~~~-~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
..++|.+..++.+.+.+... .+. ..++.++|+.|+|||+||+.++..+
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh
Confidence 45889999988888877531 112 3467899999999999999999876
No 203
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.022 Score=67.12 Aligned_cols=132 Identities=20% Similarity=0.216 Sum_probs=73.5
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhc
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQ 194 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 194 (1094)
..-|.|.|..|+|||+||+++++.+.+. ..+|+.-+....-....+..+|+.+ .....+.+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~--~~~hv~~v~Cs~l~~~~~e~iQk~l----------------~~vfse~~~ 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKD--LIAHVEIVSCSTLDGSSLEKIQKFL----------------NNVFSEALW 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccc--cceEEEEEechhccchhHHHHHHHH----------------HHHHHHHHh
Confidence 4578899999999999999999987643 2333333222221213355555544 233455667
Q ss_pred CCeEEEEEecCCChH--------h-------HHHHh-cCCC-CCCCCce--EEEEeCChhhhhh-----cCcCeEEEccC
Q 001348 195 CMKVFIVLDDVNKFR--------Q-------LEYLA-GGLD-RFGLGSR--IIVTSRDKQVLEK-----YGVDHIYEVEE 250 (1094)
Q Consensus 195 ~kr~LlVLDdv~~~~--------~-------~~~l~-~~~~-~~~~gsr--IiiTTR~~~v~~~-----~~~~~~~~l~~ 250 (1094)
...-+|||||++-.. | +..++ .... ....+.+ +|-|....+-... .-......++.
T Consensus 493 ~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~a 572 (952)
T KOG0735|consen 493 YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPA 572 (952)
T ss_pred hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCC
Confidence 788999999994321 1 11111 0000 1123444 3333333322111 12345678888
Q ss_pred CCHHHHHHHHHhhc
Q 001348 251 LNNIEALELFCKYA 264 (1094)
Q Consensus 251 L~~~ea~~Lf~~~a 264 (1094)
+..++..++++...
T Consensus 573 p~~~~R~~IL~~~~ 586 (952)
T KOG0735|consen 573 PAVTRRKEILTTIF 586 (952)
T ss_pred cchhHHHHHHHHHH
Confidence 98888888777654
No 204
>PRK08118 topology modulation protein; Reviewed
Probab=96.70 E-value=0.0038 Score=63.10 Aligned_cols=33 Identities=24% Similarity=0.416 Sum_probs=25.9
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHhc---cccceEE
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQISR---KFESKCF 148 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~~---~F~~~~~ 148 (1094)
+.|.|+|++|+||||||+.+++...- +|+..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 35889999999999999999997543 3555554
No 205
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.70 E-value=0.0063 Score=68.04 Aligned_cols=36 Identities=28% Similarity=0.448 Sum_probs=28.5
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHhccccceEEee
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMA 150 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 150 (1094)
...+|+++|++|+||||++..++..++.+ ...+.+.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~-g~~V~Li 148 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ-GKKVLLA 148 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCeEEEE
Confidence 46899999999999999999999877654 3344443
No 206
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.67 E-value=0.0018 Score=68.51 Aligned_cols=35 Identities=31% Similarity=0.423 Sum_probs=29.8
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHhccccceEEee
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMA 150 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 150 (1094)
-.++|.|..|.||||+++.+.....++|..++.+.
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 36779999999999999999999999996665554
No 207
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.023 Score=67.50 Aligned_cols=157 Identities=22% Similarity=0.295 Sum_probs=91.7
Q ss_pred CCeeehhHHHHHHHhccccC----CCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHH
Q 001348 92 EGLIGLDARIERIKSLLCIG----LPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRD 167 (1094)
Q Consensus 92 ~~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~ 167 (1094)
.+.+|.+.-.++|.+.|... .-+-.+++++|++|+|||.||+.++..+.+.|-.. -+--+|..++
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~-sLGGvrDEAE---------- 391 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRI-SLGGVRDEAE---------- 391 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEE-ecCccccHHH----------
Confidence 45789999999999988542 22347999999999999999999999888877422 2222232221
Q ss_pred HHHHhhhccCCcccCCCchHHHHH---HhcCCeEEEEEecCCChH------hHHHHhcCCCC-----CC--------CCc
Q 001348 168 RLLSQILDESIRIETPYIPHYIRE---RLQCMKVFIVLDDVNKFR------QLEYLAGGLDR-----FG--------LGS 225 (1094)
Q Consensus 168 ~ll~~l~~~~~~~~~~~~~~~l~~---~L~~kr~LlVLDdv~~~~------~~~~l~~~~~~-----~~--------~gs 225 (1094)
+.+.. ..--......+-+ ..+.+.-+++||.+|... .-.+|+..++- |. -=|
T Consensus 392 -----IRGHR-RTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS 465 (782)
T COG0466 392 -----IRGHR-RTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLS 465 (782)
T ss_pred -----hcccc-ccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchh
Confidence 11110 0000111122222 224577899999985432 12333332211 10 023
Q ss_pred eE-EEEeCCh-h-h-hhhcCcCeEEEccCCCHHHHHHHHHhhcc
Q 001348 226 RI-IVTSRDK-Q-V-LEKYGVDHIYEVEELNNIEALELFCKYAF 265 (1094)
Q Consensus 226 rI-iiTTR~~-~-v-~~~~~~~~~~~l~~L~~~ea~~Lf~~~af 265 (1094)
.| .|||-+. + + ...+....++++.+-+++|-.++-.+|..
T Consensus 466 ~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 466 KVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred heEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcc
Confidence 44 4555443 1 1 11233457999999999999988888764
No 208
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.67 E-value=0.0068 Score=77.17 Aligned_cols=51 Identities=22% Similarity=0.294 Sum_probs=39.2
Q ss_pred CCCeeehhHHHHHHHhccccC------CCC-eEEEEEEecCCCchhhHHHHHHHHHhc
Q 001348 91 FEGLIGLDARIERIKSLLCIG------LPN-IQIMGIWGMGGIGKTTIAGVLFNQISR 141 (1094)
Q Consensus 91 ~~~~vGr~~~~~~l~~~L~~~------~~~-~~vv~I~G~gGiGKTtLA~~v~~~~~~ 141 (1094)
...++|.+..++.+...+... .+. ..++.++|+.|+|||++|+++++.+..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~ 624 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD 624 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhc
Confidence 345899999998888877531 111 247889999999999999999986643
No 209
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.66 E-value=0.0054 Score=68.85 Aligned_cols=103 Identities=17% Similarity=0.147 Sum_probs=62.2
Q ss_pred HHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccc-cceEEeeechhhhccCCChHHHHHHHHHhhhccCCcc
Q 001348 102 ERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKF-ESKCFMANVREESEKGGGLVHLRDRLLSQILDESIRI 180 (1094)
Q Consensus 102 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~ 180 (1094)
.++++.+..-. .-..++|+|.+|.|||||++.+++.+..+. +..+++..+.+.. ..+.++.+.+...+.....+.
T Consensus 121 ~RvID~l~PiG-kGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~---~EV~df~~~i~~~Vvast~de 196 (380)
T PRK12608 121 MRVVDLVAPIG-KGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERP---EEVTDMRRSVKGEVYASTFDR 196 (380)
T ss_pred HhhhhheeecC-CCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCC---CCHHHHHHHHhhhEEeecCCC
Confidence 34566554322 224568999999999999999999876654 3334444444432 456788888777665432211
Q ss_pred cCCC------chHHHHHHh--cCCeEEEEEecCCCh
Q 001348 181 ETPY------IPHYIRERL--QCMKVFIVLDDVNKF 208 (1094)
Q Consensus 181 ~~~~------~~~~l~~~L--~~kr~LlVLDdv~~~ 208 (1094)
.... ....+.+++ ++++++||+|++...
T Consensus 197 ~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 197 PPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHH
Confidence 1111 111122222 579999999999544
No 210
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.66 E-value=0.0054 Score=64.05 Aligned_cols=110 Identities=12% Similarity=0.185 Sum_probs=64.2
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHhccccceEEee-echhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhc
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMA-NVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQ 194 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~-~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 194 (1094)
.+|.|.|+.|.||||+++++...+.......++.. +-.+... ... ..+.. ............+.++..|+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~--~~~----~~~i~---q~~vg~~~~~~~~~i~~aLr 72 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVH--ESK----RSLIN---QREVGLDTLSFENALKAALR 72 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccc--cCc----cceee---ecccCCCccCHHHHHHHHhc
Confidence 37899999999999999999887765544444332 2111000 000 00000 00111111122677888888
Q ss_pred CCeEEEEEecCCChHhHHHHhcCCCCCCCCceEEEEeCChhhh
Q 001348 195 CMKVFIVLDDVNKFRQLEYLAGGLDRFGLGSRIIVTSRDKQVL 237 (1094)
Q Consensus 195 ~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~ 237 (1094)
...=.+++|.+.+.+.+....... ..|-.++.|+-...+.
T Consensus 73 ~~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 73 QDPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred CCcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 778899999998887766544332 3455677777665543
No 211
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.013 Score=67.88 Aligned_cols=52 Identities=21% Similarity=0.303 Sum_probs=42.1
Q ss_pred CCCeeehhHHHHHHHhccccC----------CCCeEEEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 91 FEGLIGLDARIERIKSLLCIG----------LPNIQIMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 91 ~~~~vGr~~~~~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
..++=|++..+.++.+++..- -.-.|-|.++|++|+|||.||++++++..--
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP 250 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP 250 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc
Confidence 467899999999999887531 1236788999999999999999999876433
No 212
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.65 E-value=0.045 Score=61.10 Aligned_cols=94 Identities=15% Similarity=0.111 Sum_probs=61.9
Q ss_pred CCeEEEEEecCCChH--hHHHHhcCCCCCCCCceEEEEeCCh-hhhhhc-CcCeEEEccCCCHHHHHHHHHhhcccCCCC
Q 001348 195 CMKVFIVLDDVNKFR--QLEYLAGGLDRFGLGSRIIVTSRDK-QVLEKY-GVDHIYEVEELNNIEALELFCKYAFRQNHH 270 (1094)
Q Consensus 195 ~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIiiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~ 270 (1094)
+++=++|+|+++... .-.+|+..+....+++.+|++|.+. .++... .-...+.+..++.+++.+.+.... ..
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~----~~ 187 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG----VS 187 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC----CC
Confidence 456688899997653 3455555554445677777777654 444332 345788999999999998887531 11
Q ss_pred CchHHHHHHHHHHHhCCCchHHHHHh
Q 001348 271 PQDLMVISGRVVDYARGNPLAIKVLA 296 (1094)
Q Consensus 271 ~~~~~~~~~~i~~~~~GlPLal~~lg 296 (1094)
...+..++..++|.|+....+.
T Consensus 188 ----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 188 ----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred ----hHHHHHHHHHcCCCHHHHHHHh
Confidence 1225677999999998765543
No 213
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.64 E-value=0.0022 Score=65.51 Aligned_cols=36 Identities=31% Similarity=0.323 Sum_probs=25.8
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhccccceEEee
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMA 150 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 150 (1094)
..-+.|+|..|+|||.||.++.+.+..+=-.+.|+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 356899999999999999999997655333345553
No 214
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.64 E-value=0.047 Score=68.67 Aligned_cols=155 Identities=17% Similarity=0.233 Sum_probs=85.0
Q ss_pred CeeehhHHHHHHHhcccc----CCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHH
Q 001348 93 GLIGLDARIERIKSLLCI----GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDR 168 (1094)
Q Consensus 93 ~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ 168 (1094)
+.+|.+...++|.+++.. +.....++.++|++|+||||+|+.++..+...|-... +..+++ ..
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~-~~~~~d-------~~----- 389 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMA-LGGVRD-------EA----- 389 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEE-cCCCCC-------HH-----
Confidence 489999999999887763 1224568999999999999999999987655442211 111111 11
Q ss_pred HHHhhhccCC-cccCCC--chHHHHHHhcCCeEEEEEecCCChHh------HHHHhcCCCC--------------CC-CC
Q 001348 169 LLSQILDESI-RIETPY--IPHYIRERLQCMKVFIVLDDVNKFRQ------LEYLAGGLDR--------------FG-LG 224 (1094)
Q Consensus 169 ll~~l~~~~~-~~~~~~--~~~~l~~~L~~kr~LlVLDdv~~~~~------~~~l~~~~~~--------------~~-~g 224 (1094)
++.+... -..... ....+++. ....-+++||.++.... ...|...+.. +. ..
T Consensus 390 ---~i~g~~~~~~g~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~ 465 (784)
T PRK10787 390 ---EIRGHRRTYIGSMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSD 465 (784)
T ss_pred ---HhccchhccCCCCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCc
Confidence 1111100 000000 12222221 22344788999854321 2444433221 01 23
Q ss_pred ceEEEEeCChhhhhh-cCcCeEEEccCCCHHHHHHHHHhhc
Q 001348 225 SRIIVTSRDKQVLEK-YGVDHIYEVEELNNIEALELFCKYA 264 (1094)
Q Consensus 225 srIiiTTR~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a 264 (1094)
.-+|.||....+... .+-..++++.+++.+|-.++..++.
T Consensus 466 v~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 466 VMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred eEEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 334445543332221 2233678999999999998888776
No 215
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.61 E-value=0.0069 Score=66.30 Aligned_cols=30 Identities=27% Similarity=0.470 Sum_probs=26.0
Q ss_pred CCeEEEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 113 PNIQIMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 113 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
.+.++|+++|++|+||||++..++..++..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~ 99 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQ 99 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 457899999999999999999999877654
No 216
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.60 E-value=0.0015 Score=68.33 Aligned_cols=88 Identities=28% Similarity=0.307 Sum_probs=62.2
Q ss_pred CCCCCCCCEEeCCCC--CCC-CCCccccCCCCCCeeecCCCCCcc---cchhhcCCCCCCEEEccCCCCCCCCC------
Q 001348 728 FSGLSYLTELDLSCC--NLI-EIPQDIGCLSLLRSLDLRKNNFEY---LPASMKHLSKLKSLDLSCCNMLQSLP------ 795 (1094)
Q Consensus 728 l~~l~~L~~L~Ls~n--~l~-~lp~~l~~l~~L~~L~L~~n~l~~---lp~~l~~l~~L~~L~L~~~~~l~~lp------ 795 (1094)
+-.+++|++|.++.| .+. .++.....+|+|++|+|++|++.. ++ .+..+.+|..|++.+|.-.+.--
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~~~~l~dyre~vf 139 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNCSVTNLDDYREKVF 139 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhhhhcccCCccccccHHHHHH
Confidence 445678888888888 443 354445566899999999998774 33 46778889999999998766221
Q ss_pred ccccccccccccccccccccC
Q 001348 796 ELPLQLKFLQAKDCKQLQSLP 816 (1094)
Q Consensus 796 ~~~~~L~~L~~~~c~~l~~~~ 816 (1094)
.++++|+.|+--++...+...
T Consensus 140 ~ll~~L~~LD~~dv~~~Ea~~ 160 (260)
T KOG2739|consen 140 LLLPSLKYLDGCDVDGEEAPE 160 (260)
T ss_pred HHhhhhccccccccCCccccc
Confidence 256778888777776655544
No 217
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.57 E-value=0.048 Score=63.33 Aligned_cols=108 Identities=21% Similarity=0.168 Sum_probs=59.5
Q ss_pred cCcHHHHHHHHHHhhccC----hHHHHHHHHHHHHHhhccCCCCCCCchhHHHHHHHHHHHHhcccccccC-CCCCCeee
Q 001348 22 TGRVGDAFVVHEKQFREM----PEKVQKWRAVLTEASNLSGWDSKKIRPEAKLVDEIVKDILKKLNYFSVS-SDFEGLIG 96 (1094)
Q Consensus 22 ~g~~~~~~~~~~~~~~~~----~~~~~~w~~al~~~a~~~g~~~~~~~~e~~~i~~i~~~v~~~l~~~~~~-~~~~~~vG 96 (1094)
+.++..+|.+...+-.-+ .+.++.++.||-++ .-..+.++++++.+..+.....++ ...+.-.=
T Consensus 5 ~~~~~~~~~~l~~~~~~~e~~i~~~l~ei~~~Ll~a-----------DV~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~ 73 (428)
T TIGR00959 5 SERLQRIFKKLSGRGTITEKNIKEALREIRLALLEA-----------DVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQF 73 (428)
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHC-----------CCCHHHHHHHHHHHHHHhccccccccCCcHHHH
Confidence 345666666665442222 24566677777654 233455666666665554321101 01100000
Q ss_pred hhHHHHHHHhccccC-------CCCeEEEEEEecCCCchhhHHHHHHHHHh
Q 001348 97 LDARIERIKSLLCIG-------LPNIQIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 97 r~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
...-.++|.+++... ...+.+|.++|.+|+||||+|..++..+.
T Consensus 74 ~~~v~~eL~~~l~~~~~~~~~~~~~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 74 IKIVHEELVAILGGENASLNLAKKPPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred HHHHHHHHHHHhCCCCcccccCCCCCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 222334555555432 12367999999999999999999998764
No 218
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.56 E-value=0.024 Score=61.33 Aligned_cols=173 Identities=18% Similarity=0.143 Sum_probs=94.8
Q ss_pred CCCCeeehhHHHHHHHhccccC--CCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhcc-CCChHHHH
Q 001348 90 DFEGLIGLDARIERIKSLLCIG--LPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEK-GGGLVHLR 166 (1094)
Q Consensus 90 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~-~~~~~~l~ 166 (1094)
+...++|-..+..++..++... -++-.-|.|+|+.|.|||+|.-....+ ...|.....+.-....-.. .-.+..+.
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHH
Confidence 3456999999999998888642 134456779999999999998877765 3344444444333221110 01233444
Q ss_pred HHHHHhhhccCCcccCCCc-hHHHHHHhcC------CeEEEEEecCCChH----h--HHHHhcC-CCCCCCCceEEEEeC
Q 001348 167 DRLLSQILDESIRIETPYI-PHYIRERLQC------MKVFIVLDDVNKFR----Q--LEYLAGG-LDRFGLGSRIIVTSR 232 (1094)
Q Consensus 167 ~~ll~~l~~~~~~~~~~~~-~~~l~~~L~~------kr~LlVLDdv~~~~----~--~~~l~~~-~~~~~~gsrIiiTTR 232 (1094)
+++..++........+... ...+-..|+. -+|++|+|.+|--. | +-.+... -....|-|-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 4444444322222222222 4555555543 37999999875432 2 2222211 122356777889999
Q ss_pred Chhh-------hhhcCcCeEEEccCCCHHHHHHHHHhh
Q 001348 233 DKQV-------LEKYGVDHIYEVEELNNIEALELFCKY 263 (1094)
Q Consensus 233 ~~~v-------~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 263 (1094)
-.-. -.......++-++.++-++-.+++...
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~l 218 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKL 218 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHH
Confidence 5532 222223345666666666666555544
No 219
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.55 E-value=0.034 Score=60.82 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=21.2
Q ss_pred EEEEEecCCCchhhHHHHHHHHHhc
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQISR 141 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~~~~ 141 (1094)
-|.|.|++|+|||++|++++.....
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg~ 47 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRDR 47 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 5568999999999999999986533
No 220
>PRK07261 topology modulation protein; Provisional
Probab=96.55 E-value=0.007 Score=61.52 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.6
Q ss_pred EEEEEecCCCchhhHHHHHHHHH
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
.|.|+|++|+||||||+++....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998754
No 221
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.54 E-value=0.043 Score=62.11 Aligned_cols=145 Identities=14% Similarity=0.123 Sum_probs=86.2
Q ss_pred Ceee-hhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhcc---------------------ccceEEee
Q 001348 93 GLIG-LDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRK---------------------FESKCFMA 150 (1094)
Q Consensus 93 ~~vG-r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~~~~~ 150 (1094)
.++| -+..++.+...+..+ .-.....++|+.|+||||+|+.+.+.+-.. ++...++.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~ 84 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVA 84 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEec
Confidence 4566 666777787777532 235677899999999999999998865321 11111110
Q ss_pred echhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHH-----hcCCeEEEEEecCCCh--HhHHHHhcCCCCCCC
Q 001348 151 NVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRER-----LQCMKVFIVLDDVNKF--RQLEYLAGGLDRFGL 223 (1094)
Q Consensus 151 ~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~-----L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~ 223 (1094)
-. . .. ..+.+ .+.+.+. ..+.+=++|+|+++.. +....|+..+.....
T Consensus 85 ~~-~--~~-i~id~---------------------ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~ 139 (329)
T PRK08058 85 PD-G--QS-IKKDQ---------------------IRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSG 139 (329)
T ss_pred cc-c--cc-CCHHH---------------------HHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCC
Confidence 00 0 00 01111 1112222 2234556888988654 345666666655566
Q ss_pred CceEEEEeCChh-hhhh-cCcCeEEEccCCCHHHHHHHHHhh
Q 001348 224 GSRIIVTSRDKQ-VLEK-YGVDHIYEVEELNNIEALELFCKY 263 (1094)
Q Consensus 224 gsrIiiTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~ 263 (1094)
++.+|++|.+.+ +... ......+++..++.++..+.+...
T Consensus 140 ~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 140 GTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred CceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 777777776643 3332 234578999999999998888653
No 222
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.016 Score=65.99 Aligned_cols=130 Identities=21% Similarity=0.228 Sum_probs=78.5
Q ss_pred CCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHH
Q 001348 113 PNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRER 192 (1094)
Q Consensus 113 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 192 (1094)
.....|.+.|++|.|||+||..++. ...|+.+-.++ .. ..-|+.+-.+-.. ......+.
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~--~S~FPFvKiiS---pe--~miG~sEsaKc~~--------------i~k~F~DA 594 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL--SSDFPFVKIIS---PE--DMIGLSESAKCAH--------------IKKIFEDA 594 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh--hcCCCeEEEeC---hH--HccCccHHHHHHH--------------HHHHHHHh
Confidence 4567788999999999999999986 46787554432 11 1122221111100 01122233
Q ss_pred hcCCeEEEEEecCCChHhH------------HHH---hcCCCCCCCCceEEEEeCChhhhhhcCc----CeEEEccCCCH
Q 001348 193 LQCMKVFIVLDDVNKFRQL------------EYL---AGGLDRFGLGSRIIVTSRDKQVLEKYGV----DHIYEVEELNN 253 (1094)
Q Consensus 193 L~~kr~LlVLDdv~~~~~~------------~~l---~~~~~~~~~gsrIiiTTR~~~v~~~~~~----~~~~~l~~L~~ 253 (1094)
-+..--.||+||++..-+| ++| +...+..|..--|+-||..+.++..|+. ...|.|+.++.
T Consensus 595 YkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 595 YKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred hcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 3455678999999665443 222 2232333334446668888899988763 46889999987
Q ss_pred -HHHHHHHHhh
Q 001348 254 -IEALELFCKY 263 (1094)
Q Consensus 254 -~ea~~Lf~~~ 263 (1094)
++..+.++..
T Consensus 675 ~~~~~~vl~~~ 685 (744)
T KOG0741|consen 675 GEQLLEVLEEL 685 (744)
T ss_pred hHHHHHHHHHc
Confidence 7777777664
No 223
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.51 E-value=0.011 Score=75.08 Aligned_cols=50 Identities=26% Similarity=0.319 Sum_probs=38.8
Q ss_pred CCeeehhHHHHHHHhcccc------C-CCCeEEEEEEecCCCchhhHHHHHHHHHhc
Q 001348 92 EGLIGLDARIERIKSLLCI------G-LPNIQIMGIWGMGGIGKTTIAGVLFNQISR 141 (1094)
Q Consensus 92 ~~~vGr~~~~~~l~~~L~~------~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 141 (1094)
..++|.+..++.+.+.+.. . .....++.++|+.|+|||.+|++++..+-+
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~ 622 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG 622 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC
Confidence 4589999999988887632 1 122457889999999999999999987643
No 224
>PRK14974 cell division protein FtsY; Provisional
Probab=96.51 E-value=0.019 Score=64.52 Aligned_cols=29 Identities=24% Similarity=0.337 Sum_probs=25.1
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
..++|+++|++|+||||++..++..++.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999998876554
No 225
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.49 E-value=0.0088 Score=67.12 Aligned_cols=35 Identities=17% Similarity=0.302 Sum_probs=28.5
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHhccccceEEee
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMA 150 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 150 (1094)
.-+.++|..|+|||+||.++++.+..+--.++|+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 67999999999999999999998765544455654
No 226
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.44 E-value=0.0026 Score=60.52 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=21.4
Q ss_pred EEEEEecCCCchhhHHHHHHHHH
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
+|+|.|++|+||||+|+.+++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999875
No 227
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.43 E-value=0.012 Score=65.67 Aligned_cols=37 Identities=19% Similarity=0.369 Sum_probs=29.0
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHhccccceEEee
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMA 150 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 150 (1094)
..+-+.|+|..|+|||.||.++++.+..+-..+.|+.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~ 191 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH 191 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 3567999999999999999999998765433345553
No 228
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.41 E-value=0.2 Score=56.02 Aligned_cols=90 Identities=10% Similarity=0.161 Sum_probs=61.1
Q ss_pred CeEEEEEecCCCh--HhHHHHhcCCCCCCCCceEEEEeCCh-hhhhhc-CcCeEEEccCCCHHHHHHHHHhhcccCCCCC
Q 001348 196 MKVFIVLDDVNKF--RQLEYLAGGLDRFGLGSRIIVTSRDK-QVLEKY-GVDHIYEVEELNNIEALELFCKYAFRQNHHP 271 (1094)
Q Consensus 196 kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~ 271 (1094)
++=++|+|+++.. .....|+..+....+++.+|++|.+. .++... .-...+.+..++.+++.+.+.... ..
T Consensus 108 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~----~~- 182 (319)
T PRK06090 108 GYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG----IT- 182 (319)
T ss_pred CceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC----Cc-
Confidence 4457788988665 34666666665555667777766655 454443 345789999999999999887542 11
Q ss_pred chHHHHHHHHHHHhCCCchHHHHH
Q 001348 272 QDLMVISGRVVDYARGNPLAIKVL 295 (1094)
Q Consensus 272 ~~~~~~~~~i~~~~~GlPLal~~l 295 (1094)
....++..++|.|+....+
T Consensus 183 -----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 183 -----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred -----hHHHHHHHcCCCHHHHHHH
Confidence 1346789999999876555
No 229
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.38 E-value=0.13 Score=54.38 Aligned_cols=230 Identities=18% Similarity=0.257 Sum_probs=129.0
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhc------cccceEEeeechh-------
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISR------KFESKCFMANVRE------- 154 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~F~~~~~~~~~~~------- 154 (1094)
|...+.+.++++.-.++.++.. ..+.+-..++|+.|.||-|.+..+.+++-+ +-+...|......
T Consensus 9 pksl~~l~~~~e~~~~Lksl~~--~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistv 86 (351)
T KOG2035|consen 9 PKSLDELIYHEELANLLKSLSS--TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTV 86 (351)
T ss_pred cchhhhcccHHHHHHHHHHhcc--cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEe
Confidence 4455567888888888888775 346778889999999999999998886432 2333444432221
Q ss_pred ---------hhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeE-EEEEecCCCh--HhHHHHhcCCCCCC
Q 001348 155 ---------ESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKV-FIVLDDVNKF--RQLEYLAGGLDRFG 222 (1094)
Q Consensus 155 ---------~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~-LlVLDdv~~~--~~~~~l~~~~~~~~ 222 (1094)
.|+....-..+.+++++++.....-. .. ..|.| ++|+-.++.. +.-.+|........
T Consensus 87 sS~yHlEitPSDaG~~DRvViQellKevAQt~qie----------~~-~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs 155 (351)
T KOG2035|consen 87 SSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIE----------TQ-GQRPFKVVVINEADELTRDAQHALRRTMEKYS 155 (351)
T ss_pred cccceEEeChhhcCcccHHHHHHHHHHHHhhcchh----------hc-cccceEEEEEechHhhhHHHHHHHHHHHHHHh
Confidence 01111111234444444443221100 00 11233 4555555443 22333443333345
Q ss_pred CCceEEEEeCChh-hhh-hcCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCc-hHHHHHhhhh
Q 001348 223 LGSRIIVTSRDKQ-VLE-KYGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNP-LAIKVLASFF 299 (1094)
Q Consensus 223 ~gsrIiiTTR~~~-v~~-~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlP-Lal~~lg~~L 299 (1094)
..+|+|+..-... +.. .-...-.+++++.+++|....++..+-+..-..+ .+++++|+++++|+- -|+-++ ...
T Consensus 156 ~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllml-E~~ 232 (351)
T KOG2035|consen 156 SNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLML-EAV 232 (351)
T ss_pred cCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHH-HHH
Confidence 6788887443221 111 1123457899999999999999988744433222 678899999999864 333332 222
Q ss_pred c-------CC----CHHHHHHHHHHhhc-----CCCccHHHHHHHhhhcc
Q 001348 300 H-------RK----SKLDWEIALQNLKQ-----ISGPEILAVLKISYDEL 333 (1094)
Q Consensus 300 ~-------~~----~~~~w~~~l~~l~~-----~~~~~i~~~L~~sy~~L 333 (1094)
+ .+ ...+|+..+.++.. .....+.++=..=|+-|
T Consensus 233 ~~~n~~~~a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 233 RVNNEPFTANSQVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELL 282 (351)
T ss_pred HhccccccccCCCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 1 11 35689998887533 23344555555556554
No 230
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.37 E-value=0.011 Score=75.71 Aligned_cols=51 Identities=24% Similarity=0.322 Sum_probs=39.8
Q ss_pred CCeeehhHHHHHHHhccccC------CCC-eEEEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 92 EGLIGLDARIERIKSLLCIG------LPN-IQIMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 92 ~~~vGr~~~~~~l~~~L~~~------~~~-~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
..++|.+..++.+...+... .+. ..++.++|+.|+|||++|+++...+...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~ 622 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD 622 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 45899999999998887542 111 3568899999999999999999876443
No 231
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.36 E-value=0.015 Score=60.47 Aligned_cols=173 Identities=18% Similarity=0.217 Sum_probs=98.1
Q ss_pred CCCCeeehhHHHH---HHHhcccc----CCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCCh
Q 001348 90 DFEGLIGLDARIE---RIKSLLCI----GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGL 162 (1094)
Q Consensus 90 ~~~~~vGr~~~~~---~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~ 162 (1094)
..++.||.+.... -|++.|.. +.-.++-|..+|++|.|||.+|++++++.+--| .....
T Consensus 119 t~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~----l~vka---------- 184 (368)
T COG1223 119 TLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPL----LLVKA---------- 184 (368)
T ss_pred cHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCce----EEech----------
Confidence 3467899887643 34555543 224589999999999999999999998654332 11111
Q ss_pred HHHHHHHHHhhhccCCcccCCCchHHHHHHh-cCCeEEEEEecCCCh--------------HhHHHHhcCCCC--CCCCc
Q 001348 163 VHLRDRLLSQILDESIRIETPYIPHYIRERL-QCMKVFIVLDDVNKF--------------RQLEYLAGGLDR--FGLGS 225 (1094)
Q Consensus 163 ~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~--------------~~~~~l~~~~~~--~~~gs 225 (1094)
.+++.+-.+... ..++.+.++- +.-.+++.+|.++.. +...+|+..++. .+.|-
T Consensus 185 ----t~liGehVGdga-----r~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGV 255 (368)
T COG1223 185 ----TELIGEHVGDGA-----RRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGV 255 (368)
T ss_pred ----HHHHHHHhhhHH-----HHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCce
Confidence 011111111100 0022222222 335788999987432 235666665543 24466
Q ss_pred eEEEEeCChhhhhhc---CcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCC
Q 001348 226 RIIVTSRDKQVLEKY---GVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGN 288 (1094)
Q Consensus 226 rIiiTTR~~~v~~~~---~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl 288 (1094)
..|-.|....++... ....-++...-+++|..+++..++-.-.-+.+.. .+.++.+.+|+
T Consensus 256 vtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~---~~~~~~~t~g~ 318 (368)
T COG1223 256 VTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD---LRYLAAKTKGM 318 (368)
T ss_pred EEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC---HHHHHHHhCCC
Confidence 666666666655431 2345677778899999999999883322222111 34555555554
No 232
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.35 E-value=0.1 Score=54.86 Aligned_cols=177 Identities=16% Similarity=0.112 Sum_probs=98.1
Q ss_pred CCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCc-hHHHHH
Q 001348 113 PNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYI-PHYIRE 191 (1094)
Q Consensus 113 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~ 191 (1094)
++.+++.++|.-|.|||+++|++.....+.=-..+.+. ....+...+...+..++.. .+...... ...+.+
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~------~~~~s~~~~~~ai~~~l~~--~p~~~~~~~~e~~~~ 120 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID------KPTLSDATLLEAIVADLES--QPKVNVNAVLEQIDR 120 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec------CcchhHHHHHHHHHHHhcc--CccchhHHHHHHHHH
Confidence 45569999999999999999965554332211112222 1114455667777777655 22222221 233333
Q ss_pred Hh-----cCCe-EEEEEecCCCh--HhHHHHhcCC---CCCCCCceEEEEeCCh-------hhhhhcC-cCeE-EEccCC
Q 001348 192 RL-----QCMK-VFIVLDDVNKF--RQLEYLAGGL---DRFGLGSRIIVTSRDK-------QVLEKYG-VDHI-YEVEEL 251 (1094)
Q Consensus 192 ~L-----~~kr-~LlVLDdv~~~--~~~~~l~~~~---~~~~~gsrIiiTTR~~-------~v~~~~~-~~~~-~~l~~L 251 (1094)
.| +++| +.+++||..+. ++++.+.--. ..+..--+|+..-..+ .+....+ -..+ |++.++
T Consensus 121 ~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~ 200 (269)
T COG3267 121 ELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPL 200 (269)
T ss_pred HHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCc
Confidence 32 5677 99999998554 3344433211 1111112233332211 1111111 1123 999999
Q ss_pred CHHHHHHHHHhhcccCCCCCchH-HHHHHHHHHHhCCCchHHHHHhh
Q 001348 252 NNIEALELFCKYAFRQNHHPQDL-MVISGRVVDYARGNPLAIKVLAS 297 (1094)
Q Consensus 252 ~~~ea~~Lf~~~af~~~~~~~~~-~~~~~~i~~~~~GlPLal~~lg~ 297 (1094)
+.++...++.++.-+...+.+-+ .+....|.....|.|.++..++.
T Consensus 201 ~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 201 TEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred ChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 99999988888765443333222 34556788889999999876654
No 233
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.32 E-value=0.007 Score=62.61 Aligned_cols=122 Identities=19% Similarity=0.229 Sum_probs=58.1
Q ss_pred hHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHH--HhccccceEEeeechhhhccCCC--hHHHH-------
Q 001348 98 DARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQ--ISRKFESKCFMANVREESEKGGG--LVHLR------- 166 (1094)
Q Consensus 98 ~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~--~~~~F~~~~~~~~~~~~~~~~~~--~~~l~------- 166 (1094)
..+-....+.|. +..+|.+.|++|.|||.||.+.+-+ ..++|+..++....-+..+. -| --++.
T Consensus 6 ~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~-lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 6 NEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGED-LGFLPGDLEEKMEPYL 80 (205)
T ss_dssp SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT-----SS---------TTT
T ss_pred CHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccc-cccCCCCHHHHHHHHH
Confidence 334444444443 3459999999999999999998864 34677777766443321111 00 00111
Q ss_pred ---HHHHHhhhccCCcccCCCchHHHH----------HHhcCC---eEEEEEecCCCh--HhHHHHhcCCCCCCCCceEE
Q 001348 167 ---DRLLSQILDESIRIETPYIPHYIR----------ERLQCM---KVFIVLDDVNKF--RQLEYLAGGLDRFGLGSRII 228 (1094)
Q Consensus 167 ---~~ll~~l~~~~~~~~~~~~~~~l~----------~~L~~k---r~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIi 228 (1094)
.+.+..+... ...+.+. ..++++ .-+||+|++.+. +++..++.. .+.||+||
T Consensus 81 ~p~~d~l~~~~~~-------~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii 150 (205)
T PF02562_consen 81 RPIYDALEELFGK-------EKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKII 150 (205)
T ss_dssp HHHHHHHTTTS-T-------TCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEE
T ss_pred HHHHHHHHHHhCh-------HhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEE
Confidence 1111111110 1111111 123443 579999999654 567777655 58899999
Q ss_pred EEeCCh
Q 001348 229 VTSRDK 234 (1094)
Q Consensus 229 iTTR~~ 234 (1094)
++=-..
T Consensus 151 ~~GD~~ 156 (205)
T PF02562_consen 151 ITGDPS 156 (205)
T ss_dssp EEE---
T ss_pred EecCce
Confidence 987544
No 234
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.27 E-value=0.047 Score=56.43 Aligned_cols=56 Identities=21% Similarity=0.321 Sum_probs=42.1
Q ss_pred CCCCeeehhHHHHHHHhcccc--CCCCeEEEEEEecCCCchhhHHHHHHHHHhccccc
Q 001348 90 DFEGLIGLDARIERIKSLLCI--GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFES 145 (1094)
Q Consensus 90 ~~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~ 145 (1094)
+-..++|.|...+.|.+-... .....--|.+||.-|.|||.|++++.+.+.++.-.
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr 115 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLR 115 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCe
Confidence 345699999988887653321 12234567899999999999999999998887655
No 235
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.26 E-value=0.02 Score=73.11 Aligned_cols=118 Identities=17% Similarity=0.172 Sum_probs=65.3
Q ss_pred CCeeehhHHHHHHHhccccC------CCC-eEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHH
Q 001348 92 EGLIGLDARIERIKSLLCIG------LPN-IQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVH 164 (1094)
Q Consensus 92 ~~~vGr~~~~~~l~~~L~~~------~~~-~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~ 164 (1094)
..++|.+..++.+...+... .+. ...+.++|+.|+|||+||+++++.+-..-...+. .+..+.... +.+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~-~d~s~~~~~-~~~-- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIR-LDMSEYMEK-HTV-- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEE-EEchhcccc-ccH--
Confidence 46899999999998876421 112 3456789999999999999999876433222222 223332221 111
Q ss_pred HHHHHHHhhhccCCcccCCCchHHHHHHhcCCe-EEEEEecCCCh--HhHHHHhcCCC
Q 001348 165 LRDRLLSQILDESIRIETPYIPHYIRERLQCMK-VFIVLDDVNKF--RQLEYLAGGLD 219 (1094)
Q Consensus 165 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr-~LlVLDdv~~~--~~~~~l~~~~~ 219 (1094)
..+.+.....-..+....+.+.++.++ -+++||+++.. +.++.|...+.
T Consensus 585 ------~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le 636 (821)
T CHL00095 585 ------SKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILD 636 (821)
T ss_pred ------HHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhc
Confidence 122222111101111234555555554 58899999654 34555555443
No 236
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.25 E-value=0.003 Score=70.49 Aligned_cols=49 Identities=22% Similarity=0.333 Sum_probs=41.3
Q ss_pred CeeehhHHHHHHHhccccC----CCCeEEEEEEecCCCchhhHHHHHHHHHhc
Q 001348 93 GLIGLDARIERIKSLLCIG----LPNIQIMGIWGMGGIGKTTIAGVLFNQISR 141 (1094)
Q Consensus 93 ~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 141 (1094)
+++|+++.++++.+.+... ....++++++|++|.||||||+++.+.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 7999999999999988542 234689999999999999999999986543
No 237
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.14 Score=52.87 Aligned_cols=146 Identities=21% Similarity=0.340 Sum_probs=84.1
Q ss_pred Cee-ehhHHHHHHHhccccC-----------CCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCC
Q 001348 93 GLI-GLDARIERIKSLLCIG-----------LPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGG 160 (1094)
Q Consensus 93 ~~v-Gr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 160 (1094)
++| |.+..+++|.+.+... -..++-|.++|++|.|||-||++||+. ..+.|+.+.+.
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-----t~c~firvsgs------ 215 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-----TDCTFIRVSGS------ 215 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-----cceEEEEechH------
Confidence 355 5677888888766432 135788899999999999999999974 23334433221
Q ss_pred ChHHHHHHHHHhhhccCCcccCCCchHHHHHHh----cCCeEEEEEecCCCh-------------H-h--HHHHhcCCCC
Q 001348 161 GLVHLRDRLLSQILDESIRIETPYIPHYIRERL----QCMKVFIVLDDVNKF-------------R-Q--LEYLAGGLDR 220 (1094)
Q Consensus 161 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L----~~kr~LlVLDdv~~~-------------~-~--~~~l~~~~~~ 220 (1094)
.-+|+ ..++. .+++++.+ .+-.-+|..|.+++. + | .-+++..++.
T Consensus 216 --elvqk-----~igeg--------srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldg 280 (404)
T KOG0728|consen 216 --ELVQK-----YIGEG--------SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDG 280 (404)
T ss_pred --HHHHH-----Hhhhh--------HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccc
Confidence 11111 11211 22222222 234567777776432 1 1 2233334443
Q ss_pred C--CCCceEEEEeCChhhhhh-----cCcCeEEEccCCCHHHHHHHHHhhc
Q 001348 221 F--GLGSRIIVTSRDKQVLEK-----YGVDHIYEVEELNNIEALELFCKYA 264 (1094)
Q Consensus 221 ~--~~gsrIiiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a 264 (1094)
| ...-+||..|..-.++.. -..++.++.++-+++...+++.-+.
T Consensus 281 featknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 281 FEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred cccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 3 234577776654444332 2356778888888888888887665
No 238
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.22 E-value=0.0079 Score=60.34 Aligned_cols=34 Identities=29% Similarity=0.353 Sum_probs=27.1
Q ss_pred EEEEEecCCCchhhHHHHHHHHHhccccceEEee
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMA 150 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 150 (1094)
++.|+|.+|.||||+|+.++.....+-..++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 4689999999999999999997766444555654
No 239
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.20 E-value=0.039 Score=63.65 Aligned_cols=110 Identities=20% Similarity=0.159 Sum_probs=59.4
Q ss_pred cCcHHHHHHHHHHhhccCh----HHHHHHHHHHHHHhhccCCCCCCCchhHHHHHHHHHHHHhcccccccCC-CCCCeee
Q 001348 22 TGRVGDAFVVHEKQFREMP----EKVQKWRAVLTEASNLSGWDSKKIRPEAKLVDEIVKDILKKLNYFSVSS-DFEGLIG 96 (1094)
Q Consensus 22 ~g~~~~~~~~~~~~~~~~~----~~~~~w~~al~~~a~~~g~~~~~~~~e~~~i~~i~~~v~~~l~~~~~~~-~~~~~vG 96 (1094)
+.++..+|.+...+-.-+. +.++.|+.||-++ .-..+.++++++.+.++.....++. ..+.-.=
T Consensus 6 ~~~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLlea-----------DV~~~vv~~~~~~v~~~~~~~~~~~~~~~~~~v 74 (429)
T TIGR01425 6 GSSITSALRSMSNATVIDEEVLNAMLKEICTALLES-----------DVNIKLVRQLRENIKKAINLEEMASGLNKRKMI 74 (429)
T ss_pred HHHHHHHHHHHhCCCccCHHHHHHHHHHHHHHHHHC-----------CCCHHHHHHHHHHHHHHHhccccccccCHHHHH
Confidence 3456666766654432222 3456777777654 2233445555555555432111000 0000001
Q ss_pred hhHHHHHHHhccccC-------CCCeEEEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 97 LDARIERIKSLLCIG-------LPNIQIMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 97 r~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
+..-.++|.+++... .....+|.++|.+|+||||+|..++..++.+
T Consensus 75 ~~~v~~~L~~~l~~~~~~~~~~~~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 75 QHAVFKELCNLVDPGVEAFTPKKGKQNVIMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred HHHHHHHHHHHhCCCCccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 122244555555321 1346899999999999999999999866554
No 240
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.17 E-value=0.017 Score=72.03 Aligned_cols=48 Identities=21% Similarity=0.265 Sum_probs=38.1
Q ss_pred CeeehhHHHHHHHhccccC------CC-CeEEEEEEecCCCchhhHHHHHHHHHh
Q 001348 93 GLIGLDARIERIKSLLCIG------LP-NIQIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 93 ~~vGr~~~~~~l~~~L~~~------~~-~~~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
.++|.+..++.|.+.+... .+ ....+.++|++|+|||++|++++..+.
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4899999999888877521 11 245788999999999999999998763
No 241
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.16 E-value=0.19 Score=56.29 Aligned_cols=176 Identities=10% Similarity=0.056 Sum_probs=94.4
Q ss_pred HHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccc--c-ceEEeee-chhh-hccCCChHHHHHHHHHhhhc
Q 001348 101 IERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKF--E-SKCFMAN-VREE-SEKGGGLVHLRDRLLSQILD 175 (1094)
Q Consensus 101 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~-~~~~~~~-~~~~-~~~~~~~~~l~~~ll~~l~~ 175 (1094)
.+.+...+..+ .-.....+.|+.|+||+++|++++..+-..- . ..|=.+. .+.. ...+.++..+ ..
T Consensus 11 ~~~l~~~~~~~-rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~p 81 (325)
T PRK06871 11 YQQITQAFQQG-LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL--------EP 81 (325)
T ss_pred HHHHHHHHHcC-CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE--------cc
Confidence 34455555322 1246777999999999999999998643211 0 0000000 0000 0000111000 00
Q ss_pred cCCcccCCCchHHHHHHh-----cCCeEEEEEecCCCh--HhHHHHhcCCCCCCCCceEEEEeCCh-hhhhhc-CcCeEE
Q 001348 176 ESIRIETPYIPHYIRERL-----QCMKVFIVLDDVNKF--RQLEYLAGGLDRFGLGSRIIVTSRDK-QVLEKY-GVDHIY 246 (1094)
Q Consensus 176 ~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~-~v~~~~-~~~~~~ 246 (1094)
+....-..+..+.+.+.+ .+++=++|+|+++.. ....+|+..+....+++.+|++|.+. .++... .-...+
T Consensus 82 ~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~ 161 (325)
T PRK06871 82 IDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTW 161 (325)
T ss_pred ccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEE
Confidence 000000111122233333 345567789998765 34566666665556677777777665 444432 335789
Q ss_pred EccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHH
Q 001348 247 EVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAI 292 (1094)
Q Consensus 247 ~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 292 (1094)
.+..++.+++.+.+..... . + ...+...+..++|.|+..
T Consensus 162 ~~~~~~~~~~~~~L~~~~~---~--~--~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 162 LIHPPEEQQALDWLQAQSS---A--E--ISEILTALRINYGRPLLA 200 (325)
T ss_pred eCCCCCHHHHHHHHHHHhc---c--C--hHHHHHHHHHcCCCHHHH
Confidence 9999999999998887541 1 1 112456788899999643
No 242
>PRK06696 uridine kinase; Validated
Probab=96.16 E-value=0.0073 Score=64.40 Aligned_cols=46 Identities=24% Similarity=0.284 Sum_probs=35.0
Q ss_pred hhHHHHHHHhcccc-CCCCeEEEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 97 LDARIERIKSLLCI-GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 97 r~~~~~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
|++.+++|.+.+.. ......+|+|.|.+|.||||+|+++...+...
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45556666665543 33568899999999999999999999987543
No 243
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.15 E-value=0.17 Score=59.20 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=23.0
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHh
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
.+++.++|++|+||||++..++....
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~ 246 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYA 246 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999988665
No 244
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.15 E-value=0.36 Score=54.49 Aligned_cols=92 Identities=16% Similarity=0.130 Sum_probs=60.2
Q ss_pred CCeEEEEEecCCCh--HhHHHHhcCCCCCCCCceEEEEeCC-hhhhhh-cCcCeEEEccCCCHHHHHHHHHhhcccCCCC
Q 001348 195 CMKVFIVLDDVNKF--RQLEYLAGGLDRFGLGSRIIVTSRD-KQVLEK-YGVDHIYEVEELNNIEALELFCKYAFRQNHH 270 (1094)
Q Consensus 195 ~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~ 270 (1094)
+++=++|+|+++.. .....|+..+..-.+++.+|++|.+ ..++.. ..-...+.+..++.++..+.+.... .+
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~~ 206 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----VA 206 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----CC
Confidence 34557788998665 4466676666655667766666655 445443 2345789999999999999987652 11
Q ss_pred CchHHHHHHHHHHHhCCCchHHHHHh
Q 001348 271 PQDLMVISGRVVDYARGNPLAIKVLA 296 (1094)
Q Consensus 271 ~~~~~~~~~~i~~~~~GlPLal~~lg 296 (1094)
. ...++..++|.|.....+.
T Consensus 207 ~------~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 207 D------ADALLAEAGGAPLAALALA 226 (342)
T ss_pred h------HHHHHHHcCCCHHHHHHHH
Confidence 1 1235778899997554443
No 245
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.14 E-value=0.047 Score=67.54 Aligned_cols=153 Identities=15% Similarity=0.163 Sum_probs=83.7
Q ss_pred CCeeehhHHHHHHHhccccC----------CCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCC
Q 001348 92 EGLIGLDARIERIKSLLCIG----------LPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGG 161 (1094)
Q Consensus 92 ~~~vGr~~~~~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~ 161 (1094)
.++.|.+...+++.+.+... ..-.+-|.|+|++|.||||+|+.++.+....| +.+. ..+
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f---~~is-~~~------- 220 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS-GSD------- 220 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCE---EEEe-hHH-------
Confidence 34667776666665544321 01134589999999999999999998764433 1111 111
Q ss_pred hHHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCChH----------------hHHHHhcCCCCCC--C
Q 001348 162 LVHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKFR----------------QLEYLAGGLDRFG--L 223 (1094)
Q Consensus 162 ~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~~--~ 223 (1094)
+... ..+.. .......+...-...+.+|++|+++..- .+..++...+.+. .
T Consensus 221 ---~~~~----~~g~~----~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~ 289 (644)
T PRK10733 221 ---FVEM----FVGVG----ASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 289 (644)
T ss_pred ---hHHh----hhccc----HHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCC
Confidence 0000 00000 0000112222223467899999985531 1333433333332 2
Q ss_pred CceEEEEeCChhhhhh-c----CcCeEEEccCCCHHHHHHHHHhhccc
Q 001348 224 GSRIIVTSRDKQVLEK-Y----GVDHIYEVEELNNIEALELFCKYAFR 266 (1094)
Q Consensus 224 gsrIiiTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~af~ 266 (1094)
+.-+|.||...+.+.. . ..+..+.++..+.++..+++..+.-.
T Consensus 290 ~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 290 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 337 (644)
T ss_pred CeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhc
Confidence 3445557766654332 1 24678889999999999998887643
No 246
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.13 E-value=0.052 Score=54.60 Aligned_cols=137 Identities=15% Similarity=0.183 Sum_probs=71.9
Q ss_pred ehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhcc--------------------ccceEEeeechhh
Q 001348 96 GLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRK--------------------FESKCFMANVREE 155 (1094)
Q Consensus 96 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--------------------F~~~~~~~~~~~~ 155 (1094)
|-+..++.|.+++..+ .-...+.++|+.|+||+|+|.++++.+-.. .....++... +.
T Consensus 1 gq~~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~-~~ 78 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPD-KK 78 (162)
T ss_dssp S-HHHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETT-TS
T ss_pred CcHHHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecc-cc
Confidence 4566677777777533 224567899999999999999999864221 1222222110 00
Q ss_pred hccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCCh--HhHHHHhcCCCCCCCCceEEEEeCC
Q 001348 156 SEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKF--RQLEYLAGGLDRFGLGSRIIVTSRD 233 (1094)
Q Consensus 156 ~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~ 233 (1094)
... ..+.++. .+...+.... ..+++=++|+||++.. +...+|+..+.....++++|++|++
T Consensus 79 ~~~-i~i~~ir-~i~~~~~~~~---------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~ 141 (162)
T PF13177_consen 79 KKS-IKIDQIR-EIIEFLSLSP---------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNN 141 (162)
T ss_dssp SSS-BSHHHHH-HHHHHCTSS----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-
T ss_pred cch-hhHHHHH-HHHHHHHHHH---------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECC
Confidence 000 1222222 2222211110 1235667889999764 4466666655555678899999987
Q ss_pred hh-hhhh-cCcCeEEEccCC
Q 001348 234 KQ-VLEK-YGVDHIYEVEEL 251 (1094)
Q Consensus 234 ~~-v~~~-~~~~~~~~l~~L 251 (1094)
.. ++.. ..-...+.++++
T Consensus 142 ~~~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 142 PSKILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp GGGS-HHHHTTSEEEEE---
T ss_pred hHHChHHHHhhceEEecCCC
Confidence 75 3332 233456666655
No 247
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.13 E-value=0.0074 Score=61.53 Aligned_cols=51 Identities=25% Similarity=0.302 Sum_probs=42.4
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHh
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
|....++||-+.-++++.-... +++++-+.|.||+|+||||-+..+++.+-
T Consensus 23 P~~l~dIVGNe~tv~rl~via~--~gnmP~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAK--EGNMPNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHH--cCCCCceEeeCCCCCchhhHHHHHHHHHh
Confidence 5666789999999998877664 45678888999999999999999998653
No 248
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.12 E-value=0.0071 Score=59.19 Aligned_cols=22 Identities=36% Similarity=0.391 Sum_probs=20.6
Q ss_pred EEEEecCCCchhhHHHHHHHHH
Q 001348 118 MGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 118 v~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
|.|+|++|+|||+||+.+++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999987
No 249
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.12 E-value=0.15 Score=57.53 Aligned_cols=179 Identities=12% Similarity=0.044 Sum_probs=96.0
Q ss_pred HHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhcc--ccc-eEEeeec-hh-hhccCCChHHHHHHHHHhhh
Q 001348 100 RIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRK--FES-KCFMANV-RE-ESEKGGGLVHLRDRLLSQIL 174 (1094)
Q Consensus 100 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--F~~-~~~~~~~-~~-~~~~~~~~~~l~~~ll~~l~ 174 (1094)
..+++...+..+ .-.....+.|+.|+||+|+|.+++..+-.. -+. .|=.+.. +. ....+.++..+ .
T Consensus 10 ~~~~l~~~~~~~-rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~ 80 (334)
T PRK07993 10 DYEQLVGSYQAG-RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL--------T 80 (334)
T ss_pred HHHHHHHHHHcC-CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE--------e
Confidence 445566655432 235677899999999999999999865221 000 0000000 00 00000111000 0
Q ss_pred ccCC-cccCCCchHHHHHHh-----cCCeEEEEEecCCCh--HhHHHHhcCCCCCCCCceEEEEeCCh-hhhhh-cCcCe
Q 001348 175 DESI-RIETPYIPHYIRERL-----QCMKVFIVLDDVNKF--RQLEYLAGGLDRFGLGSRIIVTSRDK-QVLEK-YGVDH 244 (1094)
Q Consensus 175 ~~~~-~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~-~v~~~-~~~~~ 244 (1094)
.+.. ..-..+..+.+.+.+ .+++=++|+|+++.. +.-..|+..+..-.+++.+|++|.+. .++.. ..-..
T Consensus 81 p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq 160 (334)
T PRK07993 81 PEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCR 160 (334)
T ss_pred cccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccc
Confidence 0000 000011122333333 345668888988665 34566666555556677777777665 45544 23346
Q ss_pred EEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHHHH
Q 001348 245 IYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAIKV 294 (1094)
Q Consensus 245 ~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 294 (1094)
.+.+..++.+++.+.+.... .. . .+.+..++..++|.|.....
T Consensus 161 ~~~~~~~~~~~~~~~L~~~~---~~-~---~~~a~~~~~la~G~~~~Al~ 203 (334)
T PRK07993 161 LHYLAPPPEQYALTWLSREV---TM-S---QDALLAALRLSAGAPGAALA 203 (334)
T ss_pred cccCCCCCHHHHHHHHHHcc---CC-C---HHHHHHHHHHcCCCHHHHHH
Confidence 78999999999998886542 11 1 12356788999999965433
No 250
>PRK10867 signal recognition particle protein; Provisional
Probab=96.11 E-value=0.044 Score=63.66 Aligned_cols=29 Identities=34% Similarity=0.504 Sum_probs=25.2
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
.+.+|.++|.+|+||||+|..++..++.+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 46899999999999999999998876655
No 251
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.11 E-value=0.14 Score=58.79 Aligned_cols=25 Identities=28% Similarity=0.243 Sum_probs=22.4
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
..+++++|++|+||||+|..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999754
No 252
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.09 E-value=0.006 Score=59.03 Aligned_cols=40 Identities=28% Similarity=0.370 Sum_probs=30.5
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhcc-ccce-EEeeechh
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRK-FESK-CFMANVRE 154 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~-~~~~~~~~ 154 (1094)
.--|+|.||+|+||||+++.+.+.++.. |... +|...+|+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~ 46 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVRE 46 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeec
Confidence 3468999999999999999999988776 6544 34444443
No 253
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.05 E-value=0.015 Score=63.07 Aligned_cols=28 Identities=25% Similarity=0.334 Sum_probs=25.2
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHhc
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQISR 141 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 141 (1094)
...-+.++|.+|+|||.||.++.+++..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~ 131 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLK 131 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHH
Confidence 5667899999999999999999999883
No 254
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.05 E-value=0.024 Score=58.00 Aligned_cols=37 Identities=32% Similarity=0.550 Sum_probs=32.0
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHhccccceEEee
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMA 150 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 150 (1094)
...+|.|.|+.|.||||+|+.++..+...+...+++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 4569999999999999999999999887777777763
No 255
>PRK04132 replication factor C small subunit; Provisional
Probab=96.04 E-value=0.088 Score=65.87 Aligned_cols=153 Identities=14% Similarity=0.113 Sum_probs=91.5
Q ss_pred Ee--cCCCchhhHHHHHHHHHh-ccccceEEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCe
Q 001348 121 WG--MGGIGKTTIAGVLFNQIS-RKFESKCFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQCMK 197 (1094)
Q Consensus 121 ~G--~gGiGKTtLA~~v~~~~~-~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr 197 (1094)
.| |.|+||||+|.++++++- +.+...+.-.+... . .++..++ +++.+....... -..+.
T Consensus 570 ~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd---~-rgid~IR-~iIk~~a~~~~~-------------~~~~~ 631 (846)
T PRK04132 570 GGNLPTVLHNTTAALALARELFGENWRHNFLELNASD---E-RGINVIR-EKVKEFARTKPI-------------GGASF 631 (846)
T ss_pred cCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCC---c-ccHHHHH-HHHHHHHhcCCc-------------CCCCC
Confidence 36 789999999999999862 22333333223222 1 2333333 333332211100 01245
Q ss_pred EEEEEecCCChH--hHHHHhcCCCCCCCCceEEEEeCChh-hhhh-cCcCeEEEccCCCHHHHHHHHHhhcccCCCCCch
Q 001348 198 VFIVLDDVNKFR--QLEYLAGGLDRFGLGSRIIVTSRDKQ-VLEK-YGVDHIYEVEELNNIEALELFCKYAFRQNHHPQD 273 (1094)
Q Consensus 198 ~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIiiTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~ 273 (1094)
-++|+|+++... +...|..........+++|.+|.+.. +... ......+++.+++.++..+.+.+.+-......
T Consensus 632 KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i-- 709 (846)
T PRK04132 632 KIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL-- 709 (846)
T ss_pred EEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC--
Confidence 799999998763 56666666555556777777766653 3322 23457899999999999888877653322111
Q ss_pred HHHHHHHHHHHhCCCchHHH
Q 001348 274 LMVISGRVVDYARGNPLAIK 293 (1094)
Q Consensus 274 ~~~~~~~i~~~~~GlPLal~ 293 (1094)
-.+....|++.++|-+..+.
T Consensus 710 ~~e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 710 TEEGLQAILYIAEGDMRRAI 729 (846)
T ss_pred CHHHHHHHHHHcCCCHHHHH
Confidence 13466789999999885443
No 256
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.033 Score=68.14 Aligned_cols=119 Identities=18% Similarity=0.186 Sum_probs=74.3
Q ss_pred CCeeehhHHHHHHHhccccC------C-CCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHH
Q 001348 92 EGLIGLDARIERIKSLLCIG------L-PNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVH 164 (1094)
Q Consensus 92 ~~~vGr~~~~~~l~~~L~~~------~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~ 164 (1094)
...+|.+..++.+.+.+... . ....+....|+.|+|||-||++++..+-+.=+.-+- .++++..
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR-~DMSEy~-------- 561 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIR-IDMSEYM-------- 561 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCcccee-echHHHH--------
Confidence 35899999999988877431 1 224677779999999999999999876432122222 2333332
Q ss_pred HHHHHHHhhhccCCcccCCCchHHHHHHhcCCeE-EEEEecCCC--hHhHHHHhcCCCC
Q 001348 165 LRDRLLSQILDESIRIETPYIPHYIRERLQCMKV-FIVLDDVNK--FRQLEYLAGGLDR 220 (1094)
Q Consensus 165 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~-LlVLDdv~~--~~~~~~l~~~~~~ 220 (1094)
-+.-++.+.+..+.----+.-..+-+..++++| +|.||.|+. ++.++-|+..++.
T Consensus 562 -EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDd 619 (786)
T COG0542 562 -EKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDD 619 (786)
T ss_pred -HHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcC
Confidence 234456666654432111124455666667777 888999954 4556666665543
No 257
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.0058 Score=71.97 Aligned_cols=53 Identities=32% Similarity=0.485 Sum_probs=44.4
Q ss_pred CCeeehhHHHHHHHhcccc----CCCCeEEEEEEecCCCchhhHHHHHHHHHhcccc
Q 001348 92 EGLIGLDARIERIKSLLCI----GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFE 144 (1094)
Q Consensus 92 ~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 144 (1094)
++-+|+++-.++|.+.+.. ++-+-++++.+|++|+|||.+|+.|+..+...|.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf 467 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFF 467 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceE
Confidence 3578999999999998854 3345689999999999999999999998777663
No 258
>PRK07667 uridine kinase; Provisional
Probab=95.99 E-value=0.01 Score=61.70 Aligned_cols=42 Identities=24% Similarity=0.309 Sum_probs=32.1
Q ss_pred HHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 101 IERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 101 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
+++|...+........+|||.|.+|.||||+|+.+...+...
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 344555554444566899999999999999999999977543
No 259
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.095 Score=63.78 Aligned_cols=177 Identities=16% Similarity=0.189 Sum_probs=104.5
Q ss_pred CCCCCeeehhHHHHHHHhcccc----------CCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhh-c
Q 001348 89 SDFEGLIGLDARIERIKSLLCI----------GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREES-E 157 (1094)
Q Consensus 89 ~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~-~ 157 (1094)
....++.|.|+..++|++...- +..=++=|-++|++|.|||-||++++-+-. +=|+.+..... +
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-----VPF~svSGSEFvE 382 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFSVSGSEFVE 382 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-----CceeeechHHHHH
Confidence 4567899999877777766531 223367899999999999999999997532 22343322111 0
Q ss_pred cCCCh-HHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCCh-----------------HhHHHHhcCCC
Q 001348 158 KGGGL-VHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKF-----------------RQLEYLAGGLD 219 (1094)
Q Consensus 158 ~~~~~-~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-----------------~~~~~l~~~~~ 219 (1094)
...+. ....+.+.. ..=.+...++.+|+++.. ..+..++...+
T Consensus 383 ~~~g~~asrvr~lf~-------------------~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emD 443 (774)
T KOG0731|consen 383 MFVGVGASRVRDLFP-------------------LARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMD 443 (774)
T ss_pred HhcccchHHHHHHHH-------------------HhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhc
Confidence 00000 011111111 111234567777766321 22666776666
Q ss_pred CCCCCceEEE--EeCChhhhhh-----cCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchH
Q 001348 220 RFGLGSRIIV--TSRDKQVLEK-----YGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLA 291 (1094)
Q Consensus 220 ~~~~gsrIii--TTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLa 291 (1094)
.+..+..||+ +|....++.. -..++.+.++.-+.....++|.-|+-..... .+..++++ ++...-|.+=|
T Consensus 444 gf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 444 GFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred CCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHH
Confidence 6655543333 4444444332 1356788999999999999999998544433 34456666 88888888755
No 260
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.95 E-value=0.03 Score=65.72 Aligned_cols=187 Identities=17% Similarity=0.218 Sum_probs=107.8
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhcc----cc--ceEEeeechhhhccCCC
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRK----FE--SKCFMANVREESEKGGG 161 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----F~--~~~~~~~~~~~~~~~~~ 161 (1094)
|...+++||-+.-...|...+..+. -..--...|+-|+||||+||-++..+-.. .+ ..|..+ ++.. . ..
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C--k~I~-~-g~ 86 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC--KEIN-E-GS 86 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh--Hhhh-c-CC
Confidence 7778889999999999999986442 12344578999999999999999853211 11 112111 0000 0 00
Q ss_pred hHHHHH-HHHHhhhccCCcccCCCchHHHHHHh-----cCCeEEEEEecCCCh--HhHHHHhcCCCCCCCCceEEEEeCC
Q 001348 162 LVHLRD-RLLSQILDESIRIETPYIPHYIRERL-----QCMKVFIVLDDVNKF--RQLEYLAGGLDRFGLGSRIIVTSRD 233 (1094)
Q Consensus 162 ~~~l~~-~ll~~l~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~ 233 (1094)
..++.. +.+ +. ...+..+.|.+.. ++|-=+.|+|.|.-. ..+.+|+..+...-+.-..|..|++
T Consensus 87 ~~DviEiDaA-----Sn---~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe 158 (515)
T COG2812 87 LIDVIEIDAA-----SN---TGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTE 158 (515)
T ss_pred cccchhhhhh-----hc---cChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCC
Confidence 011100 000 00 0111134444443 345557889999654 5688888777654555666665655
Q ss_pred hh-hhhh-cCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCc
Q 001348 234 KQ-VLEK-YGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNP 289 (1094)
Q Consensus 234 ~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlP 289 (1094)
.+ +... ....+.|..+.++.++-...+...+-...... ..+....|++..+|..
T Consensus 159 ~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~--e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 159 PQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINI--EEDALSLIARAAEGSL 214 (515)
T ss_pred cCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCcc--CHHHHHHHHHHcCCCh
Confidence 53 3322 34457899999999988888887774333222 2234455556665543
No 261
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.059 Score=56.04 Aligned_cols=56 Identities=23% Similarity=0.446 Sum_probs=40.0
Q ss_pred CeeehhHHHHHHHhcccc-----------CCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeech
Q 001348 93 GLIGLDARIERIKSLLCI-----------GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVR 153 (1094)
Q Consensus 93 ~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~ 153 (1094)
+.-|-.+++++|.+.... +-+.++-|.++|++|.|||-+|++|+|+- ..||+.+++
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt-----dacfirvig 244 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT-----DACFIRVIG 244 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc-----CceEEeehh
Confidence 355667777777665432 22456788999999999999999999864 346676543
No 262
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.90 E-value=0.1 Score=59.05 Aligned_cols=47 Identities=23% Similarity=0.199 Sum_probs=37.8
Q ss_pred CCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHH
Q 001348 92 EGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQ 138 (1094)
Q Consensus 92 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 138 (1094)
+.++|....+.++.+.+..-...-.-|.|+|..|.||+++|+.++..
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 46899999998888877653333456789999999999999999863
No 263
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.89 E-value=0.17 Score=57.42 Aligned_cols=44 Identities=14% Similarity=0.288 Sum_probs=35.2
Q ss_pred HHHHHHHhccccCC-CCeEEEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 99 ARIERIKSLLCIGL-PNIQIMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 99 ~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
.-.+.|.+.+...+ .+..+|||.|.=|.||||+.+.+.+++...
T Consensus 3 ~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 3 PYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred HHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 34556666665433 678899999999999999999999988776
No 264
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.88 E-value=0.047 Score=61.94 Aligned_cols=138 Identities=16% Similarity=0.157 Sum_probs=78.2
Q ss_pred CeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhcccc---------------------ceEEeee
Q 001348 93 GLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFE---------------------SKCFMAN 151 (1094)
Q Consensus 93 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~---------------------~~~~~~~ 151 (1094)
.++|-+....++..+......-...+.++|++|+||||+|.++++.+-.... ....+..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 4567777777777777643333445899999999999999999997653321 1111110
Q ss_pred chhhhccCCC---hHHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCChH--hHHHHhcCCCCCCCCce
Q 001348 152 VREESEKGGG---LVHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKFR--QLEYLAGGLDRFGLGSR 226 (1094)
Q Consensus 152 ~~~~~~~~~~---~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsr 226 (1094)
+.. .+ ..+..+++........ ..++.-++++|+++... .-.++..........++
T Consensus 82 ----s~~-~~~~i~~~~vr~~~~~~~~~~---------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 82 ----SDL-RKIDIIVEQVRELAEFLSESP---------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred ----ccc-CCCcchHHHHHHHHHHhccCC---------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 111 11 1222222222111100 03467789999997653 35555555555567788
Q ss_pred EEEEeCCh-hhhhhc-CcCeEEEccC
Q 001348 227 IIVTSRDK-QVLEKY-GVDHIYEVEE 250 (1094)
Q Consensus 227 IiiTTR~~-~v~~~~-~~~~~~~l~~ 250 (1094)
+|++|.+. .+.... .....+++.+
T Consensus 142 ~il~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 142 FILITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred EEEEcCChhhccchhhhcceeeecCC
Confidence 88888744 333322 2335566665
No 265
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.034 Score=59.77 Aligned_cols=35 Identities=20% Similarity=0.393 Sum_probs=27.8
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHh----ccccceEEe
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQIS----RKFESKCFM 149 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~----~~F~~~~~~ 149 (1094)
-|+|.++|++|.|||+|.++++++++ ++|.....+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~li 215 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLI 215 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEE
Confidence 48999999999999999999999643 445544444
No 266
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.86 E-value=0.093 Score=63.92 Aligned_cols=51 Identities=18% Similarity=0.235 Sum_probs=40.7
Q ss_pred CCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHH
Q 001348 89 SDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 89 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
...+.++|....+.++.+.+..-...-.-|.|+|..|.|||++|+.+++.-
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 345689999999999888775433334467799999999999999999853
No 267
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.85 E-value=0.019 Score=56.49 Aligned_cols=112 Identities=17% Similarity=0.227 Sum_probs=59.0
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCc-hHHHHHH
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYI-PHYIRER 192 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~~ 192 (1094)
.-.+++|.|..|.|||||++.+..... ...+.+++.......-. .. .+.... .-.+.+.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~~~~~i~~~-~~------------------lS~G~~~rv~lara 84 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELE-PDEGIVTWGSTVKIGYF-EQ------------------LSGGEKMRLALAKL 84 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC-CCceEEEECCeEEEEEE-cc------------------CCHHHHHHHHHHHH
Confidence 346899999999999999999987432 22444444321100000 00 000001 2234455
Q ss_pred hcCCeEEEEEecCC---ChHhHHHHhcCCCCCCCCceEEEEeCChhhhhhcCcCeEEEc
Q 001348 193 LQCMKVFIVLDDVN---KFRQLEYLAGGLDRFGLGSRIIVTSRDKQVLEKYGVDHIYEV 248 (1094)
Q Consensus 193 L~~kr~LlVLDdv~---~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~~~~l 248 (1094)
+..+.=++++|+-. |....+.+...+... +..||++|.+....... .++++.+
T Consensus 85 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~-~d~v~~l 140 (144)
T cd03221 85 LLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQV-ATKIIEL 140 (144)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHh-CCEEEEE
Confidence 55667788899762 222222222222111 24688888887665443 3455544
No 268
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.84 E-value=0.028 Score=57.76 Aligned_cols=130 Identities=16% Similarity=0.178 Sum_probs=66.5
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHH------HHHHhhhccC---Ccc---cC
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRD------RLLSQILDES---IRI---ET 182 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~------~ll~~l~~~~---~~~---~~ 182 (1094)
-.+++|.|..|.|||||++.++.... ...+.+++.... ... .....+.. +++..+.-.. ... +.
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~-~~~G~v~~~g~~-~~~--~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLK-PSSGEILLDGKD-LAS--LSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEE-CCc--CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 45999999999999999999987443 234555553211 000 01111111 1222221111 011 11
Q ss_pred CCc-hHHHHHHhcCCeEEEEEecCC---ChHhHHHHhcCCCCC-CC-CceEEEEeCChhhhhhcCcCeEEEcc
Q 001348 183 PYI-PHYIRERLQCMKVFIVLDDVN---KFRQLEYLAGGLDRF-GL-GSRIIVTSRDKQVLEKYGVDHIYEVE 249 (1094)
Q Consensus 183 ~~~-~~~l~~~L~~kr~LlVLDdv~---~~~~~~~l~~~~~~~-~~-gsrIiiTTR~~~v~~~~~~~~~~~l~ 249 (1094)
... .-.+.+.+-..+=++++|+-. |.+..+.+...+... .. |..||++|.+......+ .++++.+.
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~-~d~~~~l~ 172 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARY-ADRVILLK 172 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEEE
Confidence 111 334566667788889999863 222222222222111 22 67889999887765443 34555543
No 269
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.81 E-value=0.017 Score=59.97 Aligned_cols=35 Identities=23% Similarity=0.348 Sum_probs=26.9
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhccccceEEe
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFM 149 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 149 (1094)
+++|.++|+.|+||||.+-+++.+.+.+-..+.++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~li 35 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALI 35 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceee
Confidence 47999999999999999999998776663333444
No 270
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.81 E-value=0.063 Score=63.01 Aligned_cols=47 Identities=19% Similarity=0.236 Sum_probs=32.4
Q ss_pred ehhHHHHHHHhccccCC----CCeEEEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 96 GLDARIERIKSLLCIGL----PNIQIMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 96 Gr~~~~~~l~~~L~~~~----~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
++..-++.|.+.+.... ...++|+|+|.+|+||||++..++..+..+
T Consensus 327 ~~~~l~~~L~~~l~v~~~~~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 327 GRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred HHHHHHHHHHHhcCcCccccccCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 44444555555443211 235799999999999999999998865544
No 271
>PHA00729 NTP-binding motif containing protein
Probab=95.81 E-value=0.033 Score=58.36 Aligned_cols=27 Identities=30% Similarity=0.274 Sum_probs=23.7
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHh
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
+...|.|.|.+|+||||||.++.+++.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 455789999999999999999998754
No 272
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.78 E-value=0.013 Score=62.58 Aligned_cols=62 Identities=18% Similarity=0.252 Sum_probs=37.7
Q ss_pred hHHHHHHhcCCeEEEEEecC------CChHhHHHHhcCCCCCCCCceEEEEeCChhhhhhcCcCeEEEcc
Q 001348 186 PHYIRERLQCMKVFIVLDDV------NKFRQLEYLAGGLDRFGLGSRIIVTSRDKQVLEKYGVDHIYEVE 249 (1094)
Q Consensus 186 ~~~l~~~L~~kr~LlVLDdv------~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~~~~l~ 249 (1094)
...+.+.|..+.=+++||.= .+...+-++...+. ...|..||+++-|-..+..+ .++.+-++
T Consensus 146 rv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~-~~~~~tvv~vlHDlN~A~ry-ad~~i~lk 213 (258)
T COG1120 146 RVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLN-REKGLTVVMVLHDLNLAARY-ADHLILLK 213 (258)
T ss_pred HHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHH-HhcCCEEEEEecCHHHHHHh-CCEEEEEE
Confidence 45677778888888889964 22222222222221 13467899999999888766 44444443
No 273
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.74 E-value=0.0073 Score=63.30 Aligned_cols=41 Identities=22% Similarity=0.169 Sum_probs=22.0
Q ss_pred ccCCCcEEecCCC--CCCCCCCccccCCCcccEEecCCccCcc
Q 001348 660 YLGGLTTLNLTGC--SKLDNLPENLGNLKSLKMLCANESAISQ 700 (1094)
Q Consensus 660 ~l~~L~~L~L~~~--~~~~~lp~~l~~l~~L~~L~l~~~~i~~ 700 (1094)
.|++|+.|.++.| .....++.....+++|++|++++|.|..
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~ 105 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD 105 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc
Confidence 3455666666655 3344444444445666666666665543
No 274
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.68 E-value=0.02 Score=61.19 Aligned_cols=49 Identities=24% Similarity=0.291 Sum_probs=36.9
Q ss_pred HHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeee
Q 001348 103 RIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMAN 151 (1094)
Q Consensus 103 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~ 151 (1094)
.|-++|..+-..-.++.|+|.+|.|||++|.+++......-..++|+..
T Consensus 11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~ 59 (225)
T PRK09361 11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDT 59 (225)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 3445554343456799999999999999999999876656566778763
No 275
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.66 E-value=0.046 Score=56.30 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=20.9
Q ss_pred EEEEEecCCCchhhHHHHHHHHH
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
+|.|.|++|+||||+|+.++.++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999998865
No 276
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.64 E-value=0.016 Score=57.54 Aligned_cols=91 Identities=24% Similarity=0.268 Sum_probs=45.8
Q ss_pred EEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhcCC--e
Q 001348 120 IWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQCM--K 197 (1094)
Q Consensus 120 I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k--r 197 (1094)
|.|++|.||||+|+.++.++ .|.....-.-+++.... . ..+.+. +.+........++.-....+++++... .
T Consensus 1 i~G~PgsGK~t~~~~la~~~--~~~~is~~~llr~~~~~-~--s~~g~~-i~~~l~~g~~vp~~~v~~ll~~~l~~~~~~ 74 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY--GLVHISVGDLLREEIKS-D--SELGKQ-IQEYLDNGELVPDELVIELLKERLEQPPCN 74 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH--TSEEEEHHHHHHHHHHT-T--SHHHHH-HHHHHHTTSS--HHHHHHHHHHHHHSGGTT
T ss_pred CcCCCCCChHHHHHHHHHhc--CcceechHHHHHHHHhh-h--hHHHHH-HHHHHHhhccchHHHHHHHHHHHHhhhccc
Confidence 68999999999999999875 22222111112222111 1 111122 222222222222211256666666533 4
Q ss_pred EEEEEecC-CChHhHHHHhc
Q 001348 198 VFIVLDDV-NKFRQLEYLAG 216 (1094)
Q Consensus 198 ~LlVLDdv-~~~~~~~~l~~ 216 (1094)
--+|||+. .+.+|.+.+..
T Consensus 75 ~g~ildGfPrt~~Qa~~l~~ 94 (151)
T PF00406_consen 75 RGFILDGFPRTLEQAEALEE 94 (151)
T ss_dssp TEEEEESB-SSHHHHHHHHH
T ss_pred ceeeeeeccccHHHHHHHHH
Confidence 55789999 45566666554
No 277
>PRK04296 thymidine kinase; Provisional
Probab=95.63 E-value=0.018 Score=59.65 Aligned_cols=109 Identities=18% Similarity=0.099 Sum_probs=57.7
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHHHHHhhhccCCc--ccCCCc-hHHHHHH
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDRLLSQILDESIR--IETPYI-PHYIRER 192 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~--~~~~~~-~~~l~~~ 192 (1094)
.++.|+|..|.||||+|..++.+...+-..++++ ... ...+ .+.. .+++.+...-.. ...... ...+++
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~-k~~-~d~~-~~~~----~i~~~lg~~~~~~~~~~~~~~~~~~~~- 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF-KPA-IDDR-YGEG----KVVSRIGLSREAIPVSSDTDIFELIEE- 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE-ecc-cccc-ccCC----cEecCCCCcccceEeCChHHHHHHHHh-
Confidence 4788999999999999999999876554433333 110 0001 1111 122222111000 111111 222333
Q ss_pred hcCCeEEEEEecCCCh--HhHHHHhcCCCCCCCCceEEEEeCCh
Q 001348 193 LQCMKVFIVLDDVNKF--RQLEYLAGGLDRFGLGSRIIVTSRDK 234 (1094)
Q Consensus 193 L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~ 234 (1094)
..++.-+||+|.+.-. +++.++..... ..|..||+|.++.
T Consensus 75 ~~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~ 116 (190)
T PRK04296 75 EGEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDT 116 (190)
T ss_pred hCCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCc
Confidence 2234568999998543 44444443322 4578899999984
No 278
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.59 E-value=0.079 Score=63.27 Aligned_cols=130 Identities=18% Similarity=0.202 Sum_probs=70.7
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhcc---cc-----ceEEeeechhhh-----------ccCCCh-HHHHHHHHHhhh
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRK---FE-----SKCFMANVREES-----------EKGGGL-VHLRDRLLSQIL 174 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~---F~-----~~~~~~~~~~~~-----------~~~~~~-~~l~~~ll~~l~ 174 (1094)
-..|+|+|+.|+|||||.+.+....... .. ...|+.--.... ....+. ..-.+..+..+.
T Consensus 348 g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~ 427 (530)
T COG0488 348 GDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFG 427 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcC
Confidence 3478999999999999999997653222 11 112222111000 000011 233333444433
Q ss_pred ccCC----cccCCC---c-hHHHHHHhcCCeEEEEEecC------CChHhHHHHhcCCCCCCCCceEEEEeCChhhhhhc
Q 001348 175 DESI----RIETPY---I-PHYIRERLQCMKVFIVLDDV------NKFRQLEYLAGGLDRFGLGSRIIVTSRDKQVLEKY 240 (1094)
Q Consensus 175 ~~~~----~~~~~~---~-~~~l~~~L~~kr~LlVLDdv------~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~ 240 (1094)
-... ++.... . .-.+...+..+.=+||||.= +..++++..+..++ | .||+.|-|+......
T Consensus 428 F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~----G-tvl~VSHDr~Fl~~v 502 (530)
T COG0488 428 FTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE----G-TVLLVSHDRYFLDRV 502 (530)
T ss_pred CChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC----C-eEEEEeCCHHHHHhh
Confidence 1111 111111 1 23345556678889999954 44455555554432 4 489999999998877
Q ss_pred CcCeEEEccC
Q 001348 241 GVDHIYEVEE 250 (1094)
Q Consensus 241 ~~~~~~~l~~ 250 (1094)
+.+++.+++
T Consensus 503 -a~~i~~~~~ 511 (530)
T COG0488 503 -ATRIWLVED 511 (530)
T ss_pred -cceEEEEcC
Confidence 467777764
No 279
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.31 Score=58.86 Aligned_cols=152 Identities=22% Similarity=0.225 Sum_probs=86.0
Q ss_pred CCeeehhHHHHHHHhcccc-----------CCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCC
Q 001348 92 EGLIGLDARIERIKSLLCI-----------GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGG 160 (1094)
Q Consensus 92 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 160 (1094)
....|.+...+.+.+.+.. +-...+.|-++|++|.|||+||+++++.....|-....-
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~----------- 310 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS----------- 310 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH-----------
Confidence 4566666665555554421 123466899999999999999999999665554322110
Q ss_pred ChHHHHHHHHHhhhccCCcccCCCc-hHHHHHHhcCCeEEEEEecCCCh-------------HhHHHHhcCCCCCCCCce
Q 001348 161 GLVHLRDRLLSQILDESIRIETPYI-PHYIRERLQCMKVFIVLDDVNKF-------------RQLEYLAGGLDRFGLGSR 226 (1094)
Q Consensus 161 ~~~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~~L~~kr~LlVLDdv~~~-------------~~~~~l~~~~~~~~~gsr 226 (1094)
.+ +.+-.++. ... ........+.....|.+|.++.. .....++.........+.
T Consensus 311 ---~l----~sk~vGes-----ek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~ 378 (494)
T COG0464 311 ---EL----LSKWVGES-----EKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEG 378 (494)
T ss_pred ---HH----hccccchH-----HHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCc
Confidence 11 11111000 000 22222333467899999998432 223444444433333333
Q ss_pred --EEEEeCChhhhhh-----cCcCeEEEccCCCHHHHHHHHHhhccc
Q 001348 227 --IIVTSRDKQVLEK-----YGVDHIYEVEELNNIEALELFCKYAFR 266 (1094)
Q Consensus 227 --IiiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af~ 266 (1094)
||-||-....... -..+..+.++.-+.++..+.|..+.-.
T Consensus 379 v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~ 425 (494)
T COG0464 379 VLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRD 425 (494)
T ss_pred eEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcc
Confidence 4444443333221 134678999999999999999998853
No 280
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.55 E-value=0.0011 Score=69.31 Aligned_cols=67 Identities=25% Similarity=0.257 Sum_probs=50.2
Q ss_pred CCCCCCCCEEeCCCCCCCCCCccccCCCCCCeeecCCCCCcccch--hhcCCCCCCEEEccCCCCCCCCC
Q 001348 728 FSGLSYLTELDLSCCNLIEIPQDIGCLSLLRSLDLRKNNFEYLPA--SMKHLSKLKSLDLSCCNMLQSLP 795 (1094)
Q Consensus 728 l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~--~l~~l~~L~~L~L~~~~~l~~lp 795 (1094)
...++.|+.|.||-|.|+++ ..+..+..|++|.|..|.|.++.+ -+.++|+|+.|.|..|+-.+.-+
T Consensus 37 c~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag 105 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAG 105 (388)
T ss_pred HHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccc
Confidence 34567788888888888776 346677888888888888887654 46788888888888888666554
No 281
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.49 E-value=0.033 Score=56.32 Aligned_cols=124 Identities=17% Similarity=0.153 Sum_probs=61.6
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechh---hhccC-CChHHHHHHHHHhhhccCCcccCCCc-hHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVRE---ESEKG-GGLVHLRDRLLSQILDESIRIETPYI-PHYI 189 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~---~~~~~-~~~~~l~~~ll~~l~~~~~~~~~~~~-~~~l 189 (1094)
-.+++|.|..|.|||||++.++..... ..+.+++...+. ..+.. ..-..+.+.+.-. .....+.... .-.+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~l 102 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPW-GSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLAF 102 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHHHHH
Confidence 458999999999999999999874322 122232211000 01110 0001222222110 1111111111 3345
Q ss_pred HHHhcCCeEEEEEecCCC---h---HhHHHHhcCCCCCCCCceEEEEeCChhhhhhcCcCeEEEcc
Q 001348 190 RERLQCMKVFIVLDDVNK---F---RQLEYLAGGLDRFGLGSRIIVTSRDKQVLEKYGVDHIYEVE 249 (1094)
Q Consensus 190 ~~~L~~kr~LlVLDdv~~---~---~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~~~~l~ 249 (1094)
.+.+..++=++++|+-.. . ..+..+.... +..||++|.+..... . .++++.++
T Consensus 103 aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~-----~~tiiivsh~~~~~~-~-~d~i~~l~ 161 (166)
T cd03223 103 ARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL-----GITVISVGHRPSLWK-F-HDRVLDLD 161 (166)
T ss_pred HHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh-----CCEEEEEeCChhHHh-h-CCEEEEEc
Confidence 566666777888997522 2 2233333222 356888888876543 2 55666553
No 282
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.49 E-value=0.03 Score=56.46 Aligned_cols=125 Identities=16% Similarity=0.142 Sum_probs=63.3
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCc-hHHHHHHh
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYI-PHYIRERL 193 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~~L 193 (1094)
-.+++|.|..|.|||||++.++.... ...+.+++.... ... ....+..+. .+. -..+.+.... .-.+.+.+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~~-~~~--~~~~~~~~~---~i~-~~~qLS~G~~qrl~laral 97 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYK-PDSGEILVDGKE-VSF--ASPRDARRA---GIA-MVYQLSVGERQMVEIARAL 97 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEE-CCc--CCHHHHHhc---CeE-EEEecCHHHHHHHHHHHHH
Confidence 35899999999999999999986432 234555553211 000 111111110 000 0000111111 33455556
Q ss_pred cCCeEEEEEecCCC---hHhHHHHhcCCCCC-CCCceEEEEeCChhhhhhcCcCeEEEc
Q 001348 194 QCMKVFIVLDDVNK---FRQLEYLAGGLDRF-GLGSRIIVTSRDKQVLEKYGVDHIYEV 248 (1094)
Q Consensus 194 ~~kr~LlVLDdv~~---~~~~~~l~~~~~~~-~~gsrIiiTTR~~~v~~~~~~~~~~~l 248 (1094)
-.+.=++++|+-.. ....+.+...+... ..|..||++|.+...+... .++++.+
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~-~d~~~~l 155 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEI-ADRVTVL 155 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 66778888898632 22222222222111 2367789999887654443 3455554
No 283
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.49 E-value=0.00086 Score=69.97 Aligned_cols=96 Identities=24% Similarity=0.202 Sum_probs=61.8
Q ss_pred cccEEecCCccCccCCccccCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeCCCCCCCCCCcc--ccCCCCCCeeecCC
Q 001348 687 SLKMLCANESAISQLPSSITNLNELQVVWCSGCRGLILPPSFSGLSYLTELDLSCCNLIEIPQD--IGCLSLLRSLDLRK 764 (1094)
Q Consensus 687 ~L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~--l~~l~~L~~L~L~~ 764 (1094)
+.+.|++.++.+..+ +....++.|++|.|+-|....+.+ +..|.+|++|+|..|.|.++-.- +.++|+|+.|.|..
T Consensus 20 ~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred HhhhhcccCCCccHH-HHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence 344445555555443 233455666666666666555443 67788889999988888876433 67889999999998
Q ss_pred CCCc-ccc-----hhhcCCCCCCEEE
Q 001348 765 NNFE-YLP-----ASMKHLSKLKSLD 784 (1094)
Q Consensus 765 n~l~-~lp-----~~l~~l~~L~~L~ 784 (1094)
|.-. .-+ ..+.-||+|+.||
T Consensus 98 NPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 98 NPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CCcccccchhHHHHHHHHcccchhcc
Confidence 8544 111 1356678888775
No 284
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.46 E-value=0.09 Score=52.16 Aligned_cols=117 Identities=18% Similarity=0.136 Sum_probs=58.7
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHHHHHhhh----ccCCc--ccCCC-----
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDRLLSQIL----DESIR--IETPY----- 184 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~----~~~~~--~~~~~----- 184 (1094)
.+|-|++-.|-||||+|...+-+...+=-.+.|+.-+.... . .+-....+.+ ..+. +.... ..+..
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~-~-~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGW-K-YGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCC-c-cCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 47788888999999999999987655533344433222210 1 2222222222 1110 00000 00000
Q ss_pred ---chHHHHHHhcCCe-EEEEEecCCCh-----HhHHHHhcCCCCCCCCceEEEEeCChh
Q 001348 185 ---IPHYIRERLQCMK-VFIVLDDVNKF-----RQLEYLAGGLDRFGLGSRIIVTSRDKQ 235 (1094)
Q Consensus 185 ---~~~~l~~~L~~kr-~LlVLDdv~~~-----~~~~~l~~~~~~~~~gsrIiiTTR~~~ 235 (1094)
..+..++.+.... =|+|||++... -..+.+...+....++.-||+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 0223344444444 49999998322 122333333333345678999999864
No 285
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.44 E-value=0.056 Score=57.41 Aligned_cols=49 Identities=22% Similarity=0.299 Sum_probs=36.3
Q ss_pred HHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEee
Q 001348 102 ERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMA 150 (1094)
Q Consensus 102 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 150 (1094)
..|.++|..+-..-.++.|.|.+|+||||+|.+++.....+-..++|+.
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3455555434345689999999999999999999987655545566764
No 286
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.42 E-value=0.0023 Score=77.03 Aligned_cols=16 Identities=38% Similarity=0.652 Sum_probs=7.6
Q ss_pred hccCCCcEEecCCCCC
Q 001348 659 EYLGGLTTLNLTGCSK 674 (1094)
Q Consensus 659 ~~l~~L~~L~L~~~~~ 674 (1094)
..+++|++|++++|..
T Consensus 292 ~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 292 ERCPSLRELDLSGCHG 307 (482)
T ss_pred HhcCcccEEeeecCcc
Confidence 3344455555554443
No 287
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.42 E-value=0.11 Score=59.59 Aligned_cols=148 Identities=22% Similarity=0.243 Sum_probs=81.2
Q ss_pred CCCeeehhHH---HHHHHhccccC-------CCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCC
Q 001348 91 FEGLIGLDAR---IERIKSLLCIG-------LPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGG 160 (1094)
Q Consensus 91 ~~~~vGr~~~---~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 160 (1094)
.++.-|.|+. +++|.+.|... ..=++-|.++|++|.|||-||++|+-+..-- +|...-.+..+.
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP----FF~~sGSEFdEm-- 376 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP----FFYASGSEFDEM-- 376 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC----eEeccccchhhh--
Confidence 4556788765 45555555432 1226789999999999999999998743222 232211111100
Q ss_pred ChHHHHHHHHHhhhccCCcccCCCchHHHHHHh----cCCeEEEEEecCCCh-------------HhHHHHhcCCCCCCC
Q 001348 161 GLVHLRDRLLSQILDESIRIETPYIPHYIRERL----QCMKVFIVLDDVNKF-------------RQLEYLAGGLDRFGL 223 (1094)
Q Consensus 161 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L----~~kr~LlVLDdv~~~-------------~~~~~l~~~~~~~~~ 223 (1094)
+-.. ..+.+++.+ +.-.++|.+|.+|.. ..+..|+...+.|..
T Consensus 377 ---------~VGv-----------GArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~q 436 (752)
T KOG0734|consen 377 ---------FVGV-----------GARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQ 436 (752)
T ss_pred ---------hhcc-----------cHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCc
Confidence 0000 022222222 235789999988432 126667777776665
Q ss_pred CceEEE--EeCChhhhhh-c----CcCeEEEccCCCHHHHHHHHHhhc
Q 001348 224 GSRIIV--TSRDKQVLEK-Y----GVDHIYEVEELNNIEALELFCKYA 264 (1094)
Q Consensus 224 gsrIii--TTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~a 264 (1094)
..-||| .|--++.+.. + ..+..+.|+.-+-.--.++|..+.
T Consensus 437 NeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl 484 (752)
T KOG0734|consen 437 NEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYL 484 (752)
T ss_pred CCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHH
Confidence 444444 3333333322 1 235567777777666666666665
No 288
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.37 E-value=0.014 Score=60.78 Aligned_cols=26 Identities=42% Similarity=0.634 Sum_probs=23.6
Q ss_pred EEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
||||.|.+|.||||+|+++...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 79999999999999999999987643
No 289
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.35 E-value=0.089 Score=52.64 Aligned_cols=53 Identities=11% Similarity=0.235 Sum_probs=37.0
Q ss_pred hHHHHHHhcCCeEEEEEec----CCChHhHHHH--hcCCCCCCCCceEEEEeCChhhhhhc
Q 001348 186 PHYIRERLQCMKVFIVLDD----VNKFRQLEYL--AGGLDRFGLGSRIIVTSRDKQVLEKY 240 (1094)
Q Consensus 186 ~~~l~~~L~~kr~LlVLDd----v~~~~~~~~l--~~~~~~~~~gsrIiiTTR~~~v~~~~ 240 (1094)
.-.|.+.+-++.-+|+-|. +|....|+-+ ...+ ...|..||++|-|.++...+
T Consensus 145 RvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeei--nr~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 145 RVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI--NRLGTTVLMATHDLELVNRM 203 (223)
T ss_pred HHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHH--hhcCcEEEEEeccHHHHHhc
Confidence 4567777888888999884 4444444432 3333 25689999999999988776
No 290
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.35 E-value=0.13 Score=58.50 Aligned_cols=30 Identities=27% Similarity=0.412 Sum_probs=25.4
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHhccc
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQISRKF 143 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 143 (1094)
.-.+++++|+.|+||||++.+++.+...++
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~ 165 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRF 165 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 357999999999999999999998765444
No 291
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.32 E-value=0.15 Score=57.67 Aligned_cols=45 Identities=27% Similarity=0.197 Sum_probs=33.3
Q ss_pred eeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHH
Q 001348 94 LIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQ 138 (1094)
Q Consensus 94 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 138 (1094)
+||....+.++.+.+..-...-.-|.|+|..|.||+++|+.+++.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh
Confidence 467777777766666443333446789999999999999999874
No 292
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.30 E-value=0.016 Score=68.02 Aligned_cols=51 Identities=31% Similarity=0.365 Sum_probs=41.9
Q ss_pred CCCeeehhHHHHHHHhccc----cCCCCeEEEEEEecCCCchhhHHHHHHHHHhc
Q 001348 91 FEGLIGLDARIERIKSLLC----IGLPNIQIMGIWGMGGIGKTTIAGVLFNQISR 141 (1094)
Q Consensus 91 ~~~~vGr~~~~~~l~~~L~----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 141 (1094)
..+++|+++.+++|.+.|. .-...-+++.++|++|.||||||+.++.-+..
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 3468999999999999882 22345689999999999999999999986544
No 293
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.30 E-value=0.057 Score=52.95 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=20.9
Q ss_pred EEEEEecCCCchhhHHHHHHHHHh
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
+|.+.|++|.||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999987543
No 294
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.27 E-value=0.015 Score=55.75 Aligned_cols=22 Identities=50% Similarity=0.715 Sum_probs=20.5
Q ss_pred EEEEecCCCchhhHHHHHHHHH
Q 001348 118 MGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 118 v~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
|+|.|++|+||||+|+++..+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999875
No 295
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.27 E-value=0.17 Score=56.03 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=24.9
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
..++|+|+|++|+||||++..++..+..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 45799999999999999999999876543
No 296
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.24 E-value=0.04 Score=56.16 Aligned_cols=113 Identities=20% Similarity=0.179 Sum_probs=60.2
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeec--hhhhccCCChHHHHHHHHHhhhccCCcccCCCc-hHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANV--REESEKGGGLVHLRDRLLSQILDESIRIETPYI-PHYIRE 191 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~--~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~ 191 (1094)
-.+++|.|..|.|||||++.+..-... ..+.+++... .-..+. .. .+.... .-.+.+
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~q~-~~------------------LSgGq~qrv~lar 84 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLIP-NGDNDEWDGITPVYKPQY-ID------------------LSGGELQRVAIAA 84 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCC-CCcEEEECCEEEEEEccc-CC------------------CCHHHHHHHHHHH
Confidence 359999999999999999998864322 2344443211 000000 00 000001 334555
Q ss_pred HhcCCeEEEEEecCC---ChHh---HHHHhcCCCCCCCCceEEEEeCChhhhhhcCcCeEEEcc
Q 001348 192 RLQCMKVFIVLDDVN---KFRQ---LEYLAGGLDRFGLGSRIIVTSRDKQVLEKYGVDHIYEVE 249 (1094)
Q Consensus 192 ~L~~kr~LlVLDdv~---~~~~---~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~~~~l~ 249 (1094)
.+..+.-++++|+-. |... +..+...... ..+..||++|.+....... .++++.+.
T Consensus 85 al~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~~~~tiiivsH~~~~~~~~-~d~i~~l~ 146 (177)
T cd03222 85 ALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSE-EGKKTALVVEHDLAVLDYL-SDRIHVFE 146 (177)
T ss_pred HHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH-cCCCEEEEEECCHHHHHHh-CCEEEEEc
Confidence 566677888999862 2222 2222222211 1235688888887765543 34555554
No 297
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.24 E-value=0.065 Score=61.32 Aligned_cols=49 Identities=22% Similarity=0.287 Sum_probs=36.0
Q ss_pred HHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEee
Q 001348 102 ERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMA 150 (1094)
Q Consensus 102 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 150 (1094)
.++.+.|..+-..-.++.|.|.+|+|||||+.+++......-..++|+.
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4455555433344579999999999999999999987766545566664
No 298
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.23 E-value=0.051 Score=61.92 Aligned_cols=109 Identities=15% Similarity=0.192 Sum_probs=64.4
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhccccceEEee-echhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHh
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMA-NVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERL 193 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~-~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 193 (1094)
-..|.|.|+.|.||||+++++...+.......++.. +..+.... .. ..+ +.............+.++..|
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~--~~----~~~---i~q~evg~~~~~~~~~l~~~l 192 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHR--NK----RSL---INQREVGLDTLSFANALRAAL 192 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhcc--Cc----cce---EEccccCCCCcCHHHHHHHhh
Confidence 368999999999999999999987765554444432 21111000 00 000 001111111122367788889
Q ss_pred cCCeEEEEEecCCChHhHHHHhcCCCCCCCCceEEEEeCChh
Q 001348 194 QCMKVFIVLDDVNKFRQLEYLAGGLDRFGLGSRIIVTSRDKQ 235 (1094)
Q Consensus 194 ~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~ 235 (1094)
+...=.|++|.+.+.+.+...... ...|-.|+.|+-...
T Consensus 193 r~~pd~i~vgEird~~~~~~~l~a---a~tGh~v~~T~Ha~~ 231 (343)
T TIGR01420 193 REDPDVILIGEMRDLETVELALTA---AETGHLVFGTLHTNS 231 (343)
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHH---HHcCCcEEEEEcCCC
Confidence 999999999999988876653332 134555666655443
No 299
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.18 E-value=0.029 Score=55.31 Aligned_cols=35 Identities=23% Similarity=0.252 Sum_probs=28.5
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhccccceEEe
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFM 149 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 149 (1094)
..+|-|.|.+|.||||||+++..++...-....++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~L 36 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLL 36 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 35889999999999999999999988776555555
No 300
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.17 E-value=0.099 Score=56.10 Aligned_cols=52 Identities=23% Similarity=0.392 Sum_probs=36.3
Q ss_pred CCeeehhHHHHHHHhcccc-----------CCCCeEEEEEEecCCCchhhHHHHHHHHHhccc
Q 001348 92 EGLIGLDARIERIKSLLCI-----------GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKF 143 (1094)
Q Consensus 92 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 143 (1094)
+++-|--..+.++.+.+.. +-.-++.++|||++|-|||-+|++|+..+.-.|
T Consensus 132 ~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 132 ENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred HHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 3455555555555554432 112368899999999999999999999876554
No 301
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.12 E-value=0.029 Score=56.19 Aligned_cols=122 Identities=18% Similarity=0.199 Sum_probs=65.2
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCc-hHHHHHHhc
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYI-PHYIRERLQ 194 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~~L~ 194 (1094)
.+++|.|..|.|||||++.+...+. ...+.+++....- .. .......+. +.- ..+...... .-.+.+.+.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~~~-~~--~~~~~~~~~----i~~-~~qlS~G~~~r~~l~~~l~ 96 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGKDI-AK--LPLEELRRR----IGY-VPQLSGGQRQRVALARALL 96 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCEEc-cc--CCHHHHHhc----eEE-EeeCCHHHHHHHHHHHHHh
Confidence 6999999999999999999987543 2445555542110 00 001111111 000 000111111 334555666
Q ss_pred CCeEEEEEecCCC---hHh---HHHHhcCCCCCCCCceEEEEeCChhhhhhcCcCeEEEcc
Q 001348 195 CMKVFIVLDDVNK---FRQ---LEYLAGGLDRFGLGSRIIVTSRDKQVLEKYGVDHIYEVE 249 (1094)
Q Consensus 195 ~kr~LlVLDdv~~---~~~---~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~~~~l~ 249 (1094)
...-++++|+... ... +..+..... ..+..||++|.+...+... .++++.+.
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~~~-~d~i~~l~ 154 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELA--EEGRTVIIVTHDPELAELA-ADRVIVLK 154 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh-CCEEEEEe
Confidence 6778899998732 222 222222222 2256799999888776654 45565553
No 302
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.07 E-value=0.12 Score=60.26 Aligned_cols=125 Identities=19% Similarity=0.278 Sum_probs=75.9
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHh-
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERL- 193 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L- 193 (1094)
..-|.+||++|+|||-||++|+|+-.-.| +..- | .++++.. .++. ...+++.+
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NF-----isVK--------G-PELlNkY----VGES--------ErAVR~vFq 598 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANF-----ISVK--------G-PELLNKY----VGES--------ERAVRQVFQ 598 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCce-----Eeec--------C-HHHHHHH----hhhH--------HHHHHHHHH
Confidence 56688999999999999999999876664 3321 1 1222222 1211 22333333
Q ss_pred ---cCCeEEEEEecCCChH-------------hHHHHhcCCCCC--CCCceEEEEeCChhhhh-h----cCcCeEEEccC
Q 001348 194 ---QCMKVFIVLDDVNKFR-------------QLEYLAGGLDRF--GLGSRIIVTSRDKQVLE-K----YGVDHIYEVEE 250 (1094)
Q Consensus 194 ---~~kr~LlVLDdv~~~~-------------~~~~l~~~~~~~--~~gsrIiiTTR~~~v~~-~----~~~~~~~~l~~ 250 (1094)
..-.++|.+|.++..- .+..|+..++.. ..|--||-.|-.+.+.. . -..+...-|+.
T Consensus 599 RAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~l 678 (802)
T KOG0733|consen 599 RARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGL 678 (802)
T ss_pred HhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecC
Confidence 2368999999985421 245555555432 23444555554343322 1 13457888999
Q ss_pred CCHHHHHHHHHhhcc
Q 001348 251 LNNIEALELFCKYAF 265 (1094)
Q Consensus 251 L~~~ea~~Lf~~~af 265 (1094)
-+.+|-.++++...-
T Consensus 679 Pn~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 679 PNAEERVAILKTITK 693 (802)
T ss_pred CCHHHHHHHHHHHhc
Confidence 999999999988874
No 303
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.07 E-value=0.011 Score=57.65 Aligned_cols=45 Identities=22% Similarity=0.223 Sum_probs=30.5
Q ss_pred eehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHH
Q 001348 95 IGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 95 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
||.-..++++.+.+..-.....-|.|+|..|.||+++|+.++..-
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 456666666666554322334567899999999999999998743
No 304
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.07 E-value=0.22 Score=57.13 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=23.9
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHh
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
..++|.++|+.|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999998654
No 305
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.06 E-value=0.085 Score=53.71 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.5
Q ss_pred eEEEEEEecCCCchhhHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFN 137 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~ 137 (1094)
-.+++|+|+.|.|||||.+.+..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 45899999999999999999863
No 306
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=95.06 E-value=0.0083 Score=58.90 Aligned_cols=49 Identities=31% Similarity=0.456 Sum_probs=41.7
Q ss_pred CCEEEeEeecCCccccc-cccCcHHHHHHHHHHhhccC--hHHHHHHHHHHH
Q 001348 3 GQKVLPVFYHVDPSDVR-KQTGRVGDAFVVHEKQFREM--PEKVQKWRAVLT 51 (1094)
Q Consensus 3 ~~~v~pvfy~vdps~vr-~q~g~~~~~~~~~~~~~~~~--~~~~~~w~~al~ 51 (1094)
.++|+||||+|.|++|+ +|.+.|+.+|..+.+..... ..+...|++++.
T Consensus 89 ~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 89 DKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp TTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred ccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 48999999999999999 89999999999998876543 568899999875
No 307
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.04 E-value=0.075 Score=54.03 Aligned_cols=125 Identities=17% Similarity=0.203 Sum_probs=64.2
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHHHHHhhhccCCc---------ccCCCc
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDRLLSQILDESIR---------IETPYI 185 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~---------~~~~~~ 185 (1094)
-.+++|.|..|.|||||++.++.... ...+.+++.... ... .......+. +.-+.....- .+....
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~-~~~G~i~~~g~~-~~~--~~~~~~~~~-i~~~~~~~~~~~~t~~e~lLS~G~~ 102 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYD-PTSGEILIDGVD-LRD--LDLESLRKN-IAYVPQDPFLFSGTIRENILSGGQR 102 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC-CCCCEEEECCEE-hhh--cCHHHHHhh-EEEEcCCchhccchHHHHhhCHHHH
Confidence 45899999999999999999987543 234455543211 000 000111110 0000000000 000011
Q ss_pred -hHHHHHHhcCCeEEEEEecCCC------hHhHHHHhcCCCCCCCCceEEEEeCChhhhhhcCcCeEEEcc
Q 001348 186 -PHYIRERLQCMKVFIVLDDVNK------FRQLEYLAGGLDRFGLGSRIIVTSRDKQVLEKYGVDHIYEVE 249 (1094)
Q Consensus 186 -~~~l~~~L~~kr~LlVLDdv~~------~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~~~~l~ 249 (1094)
.-.+.+.+-.+.=+++||+-.. .+.+..+..... .+..||++|.+...... .++++.+.
T Consensus 103 ~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~---~~~tii~~sh~~~~~~~--~d~~~~l~ 168 (171)
T cd03228 103 QRIAIARALLRDPPILILDEATSALDPETEALILEALRALA---KGKTVIVIAHRLSTIRD--ADRIIVLD 168 (171)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc---CCCEEEEEecCHHHHHh--CCEEEEEc
Confidence 2235555666778999997632 223333333332 25678999988877653 55666553
No 308
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=95.04 E-value=0.022 Score=65.65 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=23.8
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHH
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
.+.+|.|.|.+|+||||+|.+++.+.
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~l 279 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRL 279 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999999999864
No 309
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.03 E-value=0.058 Score=58.04 Aligned_cols=48 Identities=17% Similarity=0.210 Sum_probs=33.7
Q ss_pred HHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEee
Q 001348 103 RIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMA 150 (1094)
Q Consensus 103 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 150 (1094)
.|-++|..+-..-.++.|+|.+|.||||+|.++......+=..++|+.
T Consensus 13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 13 ELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred HHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 444555444455689999999999999999999765333434556665
No 310
>PTZ00301 uridine kinase; Provisional
Probab=95.02 E-value=0.02 Score=59.97 Aligned_cols=29 Identities=21% Similarity=0.488 Sum_probs=25.2
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhccc
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRKF 143 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 143 (1094)
..+|||.|.+|.||||||+.+.+++...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~ 31 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHC 31 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhc
Confidence 46899999999999999999998875544
No 311
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.01 E-value=0.0036 Score=75.39 Aligned_cols=107 Identities=26% Similarity=0.357 Sum_probs=51.9
Q ss_pred ccccceeeccccccccc--chhhhhcCCcccEEeccCC-cccCccc----hhhcccCccceeeccCcc-cccc--cchhh
Q 001348 590 LAKLEYLDLGHCTILES--ISTSICKLKSLLKLCLDNC-SKLESFP----EILEKMGCLEDIDLEGTA-ITEL--PSSIE 659 (1094)
Q Consensus 590 L~~L~~L~L~~~~~~~~--lp~~i~~l~~L~~L~L~~~-~~~~~~p----~~l~~l~~L~~L~L~~~~-i~~l--p~~l~ 659 (1094)
++.|+.|.+.+|..... +-.....+++|+.|++++| ......+ .....+.+|+.|+++++. ++.. ..-..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 56666666666654443 2233445667777777662 2222111 223344566666666654 3321 11112
Q ss_pred ccCCCcEEecCCCCCC-C-CCCccccCCCcccEEecCCc
Q 001348 660 YLGGLTTLNLTGCSKL-D-NLPENLGNLKSLKMLCANES 696 (1094)
Q Consensus 660 ~l~~L~~L~L~~~~~~-~-~lp~~l~~l~~L~~L~l~~~ 696 (1094)
.+++|+.|.+.+|..+ . .+-.....+++|++|+++.+
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence 2566666666666531 1 11222334555666666655
No 312
>PTZ00494 tuzin-like protein; Provisional
Probab=95.00 E-value=2 Score=48.86 Aligned_cols=209 Identities=9% Similarity=0.043 Sum_probs=119.4
Q ss_pred HHHHHHHHHH-------------HhhccCCCCCCCchhHH--HHHHHHHHHHhccccc-----ccCCCCCCeeehhHHHH
Q 001348 43 VQKWRAVLTE-------------ASNLSGWDSKKIRPEAK--LVDEIVKDILKKLNYF-----SVSSDFEGLIGLDARIE 102 (1094)
Q Consensus 43 ~~~w~~al~~-------------~a~~~g~~~~~~~~e~~--~i~~i~~~v~~~l~~~-----~~~~~~~~~vGr~~~~~ 102 (1094)
-+.||-++++ ++...||.+++++.+.. ..+-.++.+.+.++.. ..+.....+|.|+.+-.
T Consensus 302 ERd~RY~l~KYsG~vSa~~a~Lgv~svFgwN~knYr~qQRs~Ql~~Av~TLsk~~~~~~~~~~~a~a~~~~~V~R~~eE~ 381 (664)
T PTZ00494 302 DTNFRYALAKYKGTMSCIAGVLVVAYVFTANLRAYRRQQRGHQLRTAIETLSKAARPRKEEGMLAAAAEAFEVRREDEEA 381 (664)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccccccccccccccchhhHHH
Confidence 4478877776 56667888887754432 2334445555443321 12455677999999877
Q ss_pred HHHhcccc-CCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHHHHHhhhccCCccc
Q 001348 103 RIKSLLCI-GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDRLLSQILDESIRIE 181 (1094)
Q Consensus 103 ~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~ 181 (1094)
-+...|.+ +...+|++++.|.-|.||++|.+....+- --..+|++ ++ +..+-++.+.+.+.......-
T Consensus 382 ~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE---~~paV~VD-VR-------g~EDtLrsVVKALgV~nve~C 450 (664)
T PTZ00494 382 LVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVE---GVALVHVD-VG-------GTEDTLRSVVRALGVSNVEVC 450 (664)
T ss_pred HHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHc---CCCeEEEE-ec-------CCcchHHHHHHHhCCCChhhh
Confidence 77777765 33568999999999999999999876532 22356664 33 333445566666654433221
Q ss_pred CCCchHHH-------HHHhcCCeEEEEEe--cCCChHh-HHHHhcCCCCCCCCceEEEEeCChhhhhh---cCcCeEEEc
Q 001348 182 TPYIPHYI-------RERLQCMKVFIVLD--DVNKFRQ-LEYLAGGLDRFGLGSRIIVTSRDKQVLEK---YGVDHIYEV 248 (1094)
Q Consensus 182 ~~~~~~~l-------~~~L~~kr~LlVLD--dv~~~~~-~~~l~~~~~~~~~gsrIiiTTR~~~v~~~---~~~~~~~~l 248 (1094)
.+..+.| +....++.-+||+- +-.+... ..+.. .+.....-|.|++----+.+... ..--..|.+
T Consensus 451 -GDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~v-aLacDrRlCHvv~EVplESLT~~n~~LPRLDFy~V 528 (664)
T PTZ00494 451 -GDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVV-SLVSDCQACHIVLAVPMKALTPLNVSSRRLDFYCI 528 (664)
T ss_pred -ccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHH-HHHccchhheeeeechHhhhchhhccCccceeEec
Confidence 1112222 22234566666663 2222221 11111 11112345667765444433211 112368999
Q ss_pred cCCCHHHHHHHHHhhc
Q 001348 249 EELNNIEALELFCKYA 264 (1094)
Q Consensus 249 ~~L~~~ea~~Lf~~~a 264 (1094)
+.++.++|.++-....
T Consensus 529 PnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 529 PPFSRRQAFAYAEHTL 544 (664)
T ss_pred CCcCHHHHHHHHhccc
Confidence 9999999998776543
No 313
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.99 E-value=0.15 Score=56.44 Aligned_cols=74 Identities=20% Similarity=0.282 Sum_probs=48.8
Q ss_pred chhHHHHHHHHHHHHhcccccccCCCCCCeeehhHHHHHHHhccccC----------CCCeEEEEEEecCCCchhhHHHH
Q 001348 65 RPEAKLVDEIVKDILKKLNYFSVSSDFEGLIGLDARIERIKSLLCIG----------LPNIQIMGIWGMGGIGKTTIAGV 134 (1094)
Q Consensus 65 ~~e~~~i~~i~~~v~~~l~~~~~~~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~ 134 (1094)
.+++.+++..-++|+..-.. ..=+++.|.....+-|++.+... ..--+-|..+|++|.|||-||++
T Consensus 189 ~~d~~Lve~lerdIl~~np~----ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKA 264 (491)
T KOG0738|consen 189 GYDADLVEALERDILQRNPN----IKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKA 264 (491)
T ss_pred cchHHHHHHHHHHHhccCCC----cChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHH
Confidence 34555555555555544322 22356888888877777765321 12357889999999999999999
Q ss_pred HHHHHhcc
Q 001348 135 LFNQISRK 142 (1094)
Q Consensus 135 v~~~~~~~ 142 (1094)
||-+-...
T Consensus 265 vATEc~tT 272 (491)
T KOG0738|consen 265 VATECGTT 272 (491)
T ss_pred HHHhhcCe
Confidence 99865433
No 314
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.97 E-value=0.074 Score=58.09 Aligned_cols=101 Identities=17% Similarity=0.120 Sum_probs=60.6
Q ss_pred HHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHHHHHhhhccCCc
Q 001348 100 RIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDRLLSQILDESIR 179 (1094)
Q Consensus 100 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~ 179 (1094)
.++.+..++.. .-.+|.|.|..|.||||+++++.+.+...-...+.+.+..|... .+. .++.. ..
T Consensus 68 ~~~~l~~~~~~---~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~--~~~--------~q~~v--~~ 132 (264)
T cd01129 68 NLEIFRKLLEK---PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI--PGI--------NQVQV--NE 132 (264)
T ss_pred HHHHHHHHHhc---CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC--CCc--------eEEEe--CC
Confidence 44555555532 23589999999999999999998876542223344443333211 110 01000 00
Q ss_pred ccCCCchHHHHHHhcCCeEEEEEecCCChHhHHHHh
Q 001348 180 IETPYIPHYIRERLQCMKVFIVLDDVNKFRQLEYLA 215 (1094)
Q Consensus 180 ~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~ 215 (1094)
.......+.++..|+...=.|+++++.+.+....+.
T Consensus 133 ~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~ 168 (264)
T cd01129 133 KAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAV 168 (264)
T ss_pred cCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHH
Confidence 011122778888898888999999999988655444
No 315
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.97 E-value=0.061 Score=57.25 Aligned_cols=59 Identities=15% Similarity=0.262 Sum_probs=39.2
Q ss_pred hHHHHHHhcCCeEEEEEecC----C--ChHhHHHHhcCCCCCCCCceEEEEeCChhhhhhcCcCeEEE
Q 001348 186 PHYIRERLQCMKVFIVLDDV----N--KFRQLEYLAGGLDRFGLGSRIIVTSRDKQVLEKYGVDHIYE 247 (1094)
Q Consensus 186 ~~~l~~~L~~kr~LlVLDdv----~--~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~~~~ 247 (1094)
...+.+.|..+.=|+|||.- | ....+-.++..+.. .|..||++|-|-+..... .++++-
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~--eg~tIl~vtHDL~~v~~~-~D~vi~ 211 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ--EGKTVLMVTHDLGLVMAY-FDRVIC 211 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCcHHhHhh-CCEEEE
Confidence 45678888999999999953 3 23345555555443 389999999998765544 344443
No 316
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=94.95 E-value=0.094 Score=65.88 Aligned_cols=50 Identities=22% Similarity=0.259 Sum_probs=39.1
Q ss_pred CCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHH
Q 001348 90 DFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 90 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
....++|....+.++.+.+..-...-.-|.|.|..|.|||++|+++++.-
T Consensus 374 ~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 374 EFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 44579999998888876665333334578899999999999999999853
No 317
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.92 E-value=0.023 Score=60.00 Aligned_cols=27 Identities=37% Similarity=0.636 Sum_probs=24.5
Q ss_pred CCeEEEEEEecCCCchhhHHHHHHHHH
Q 001348 113 PNIQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 113 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
.+..+|+|.|.+|+||||||+.++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356899999999999999999999876
No 318
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=94.89 E-value=0.63 Score=55.66 Aligned_cols=140 Identities=14% Similarity=0.127 Sum_probs=87.0
Q ss_pred CCCCCCeeehhHHHHHHHhcccc--CC-CCeEEEEEEecCCCchhhHHHHHHHHHh-----ccccceEEeeechhhhccC
Q 001348 88 SSDFEGLIGLDARIERIKSLLCI--GL-PNIQIMGIWGMGGIGKTTIAGVLFNQIS-----RKFESKCFMANVREESEKG 159 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~--~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~-----~~F~~~~~~~~~~~~~~~~ 159 (1094)
..+++.+=+|+.+..+|...+.. .. ..-..+.|.|.+|.|||..+..|.+.+. +.-+...|+..- ..+-
T Consensus 392 s~vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveIN---gm~l 468 (767)
T KOG1514|consen 392 SAVPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEIN---GLRL 468 (767)
T ss_pred hhccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEc---ceee
Confidence 34667889999999999988754 22 3345899999999999999999999543 222222233211 0111
Q ss_pred CChHHHHHHHHHhhhccCCcccCCCchHHHHHHhc-----CCeEEEEEecCCChHh--HHHHhcCCCCC-CCCceEEEEe
Q 001348 160 GGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQ-----CMKVFIVLDDVNKFRQ--LEYLAGGLDRF-GLGSRIIVTS 231 (1094)
Q Consensus 160 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~-----~kr~LlVLDdv~~~~~--~~~l~~~~~~~-~~gsrIiiTT 231 (1094)
.+..++...|..++.++..... ...+.+..+.. .+..++++|+++..-. -+-+-..++|- .++|+++|.+
T Consensus 469 ~~~~~~Y~~I~~~lsg~~~~~~--~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~ 546 (767)
T KOG1514|consen 469 ASPREIYEKIWEALSGERVTWD--AALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIA 546 (767)
T ss_pred cCHHHHHHHHHHhcccCcccHH--HHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEE
Confidence 4566788888877765543211 11455555554 4578889998854422 12223334553 5788877765
Q ss_pred C
Q 001348 232 R 232 (1094)
Q Consensus 232 R 232 (1094)
=
T Consensus 547 I 547 (767)
T KOG1514|consen 547 I 547 (767)
T ss_pred e
Confidence 3
No 319
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.88 E-value=0.7 Score=52.26 Aligned_cols=37 Identities=30% Similarity=0.373 Sum_probs=28.1
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHhccccceEEee
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMA 150 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 150 (1094)
..++|+|+|+.|+||||++..++.....+-..+.++.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4689999999999999999999986644423344443
No 320
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=94.88 E-value=0.11 Score=54.61 Aligned_cols=59 Identities=25% Similarity=0.403 Sum_probs=34.6
Q ss_pred HHHHhcCCeEEEEEecCCC---hHhHH-HHhcCCCCC-CC-CceEEEEeCChhhhhhcCcCeEEEcc
Q 001348 189 IRERLQCMKVFIVLDDVNK---FRQLE-YLAGGLDRF-GL-GSRIIVTSRDKQVLEKYGVDHIYEVE 249 (1094)
Q Consensus 189 l~~~L~~kr~LlVLDdv~~---~~~~~-~l~~~~~~~-~~-gsrIiiTTR~~~v~~~~~~~~~~~l~ 249 (1094)
+.+.+..+.-++++|+... ....+ .+...+... .. |..||++|.+.+.... .+.++.++
T Consensus 132 la~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~--~d~i~~l~ 196 (204)
T cd03240 132 LAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA--ADHIYRVE 196 (204)
T ss_pred HHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh--CCEEEEEe
Confidence 4556677888999998732 22222 232222221 22 5678889988876543 55666664
No 321
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.86 E-value=0.015 Score=54.79 Aligned_cols=29 Identities=31% Similarity=0.463 Sum_probs=21.0
Q ss_pred EEEEecCCCchhhHHHHHHHHHhccccce
Q 001348 118 MGIWGMGGIGKTTIAGVLFNQISRKFESK 146 (1094)
Q Consensus 118 v~I~G~gGiGKTtLA~~v~~~~~~~F~~~ 146 (1094)
|.|+|.+|+||||+|++++..+...|..+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RI 30 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRI 30 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEE
Confidence 67999999999999999999888887643
No 322
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.82 E-value=0.033 Score=57.69 Aligned_cols=30 Identities=40% Similarity=0.532 Sum_probs=26.9
Q ss_pred CCeEEEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 113 PNIQIMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 113 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
..+.+|||.|.+|.||||+|+.++..+...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 457899999999999999999999988765
No 323
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.82 E-value=0.095 Score=55.89 Aligned_cols=125 Identities=17% Similarity=0.123 Sum_probs=69.5
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHHHHHhhhccC------C-cccCCCc-
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDRLLSQILDES------I-RIETPYI- 185 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~------~-~~~~~~~- 185 (1094)
+-.++||+|..|.||||+|+.+..-.... .+.+++..-.-..-......+...+++..+.... + ..+....
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt-~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPT-SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCC-CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 44699999999999999999998744332 3344443211000000112233334444433111 1 1111122
Q ss_pred hHHHHHHhcCCeEEEEEecCCC------hHhHHHHhcCCCCCCCCceEEEEeCChhhhhhc
Q 001348 186 PHYIRERLQCMKVFIVLDDVNK------FRQLEYLAGGLDRFGLGSRIIVTSRDKQVLEKY 240 (1094)
Q Consensus 186 ~~~l~~~L~~kr~LlVLDdv~~------~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~ 240 (1094)
.-.+.+.|.-+.=|+|.|.... ..|.-.++..+.. ..|-..+..|-|-.+...+
T Consensus 117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhhh
Confidence 4457788888999999997522 2344444443332 3466678888888777655
No 324
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.81 E-value=0.085 Score=53.75 Aligned_cols=22 Identities=36% Similarity=0.419 Sum_probs=20.4
Q ss_pred EEEEEecCCCchhhHHHHHHHH
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQ 138 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~ 138 (1094)
.|.|.|.+|.||||+|+.+.++
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4779999999999999999997
No 325
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.80 E-value=0.072 Score=55.44 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=24.1
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
-+++.|.|.+|.||||+++.+...+...
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~ 45 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAA 45 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 3688899999999999999998876665
No 326
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.79 E-value=0.084 Score=57.56 Aligned_cols=119 Identities=16% Similarity=0.120 Sum_probs=65.4
Q ss_pred CCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHHHHHhhhccCC----cc-cCCCchH
Q 001348 113 PNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDRLLSQILDESI----RI-ETPYIPH 187 (1094)
Q Consensus 113 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~----~~-~~~~~~~ 187 (1094)
.+.+-++|+|..|.|||||++.+...++.. .+.+++... ..... ....++...+ ..+..... .. +......
T Consensus 109 ~~~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g~-~v~~~-d~~~ei~~~~-~~~~q~~~~~r~~v~~~~~k~~ 184 (270)
T TIGR02858 109 NRVLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRGK-KVGIV-DERSEIAGCV-NGVPQHDVGIRTDVLDGCPKAE 184 (270)
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECCE-Eeecc-hhHHHHHHHh-cccccccccccccccccchHHH
Confidence 446789999999999999999999866543 333333210 00000 0011222111 11111110 00 1111122
Q ss_pred HHHHHhc-CCeEEEEEecCCChHhHHHHhcCCCCCCCCceEEEEeCChhhhh
Q 001348 188 YIRERLQ-CMKVFIVLDDVNKFRQLEYLAGGLDRFGLGSRIIVTSRDKQVLE 238 (1094)
Q Consensus 188 ~l~~~L~-~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~ 238 (1094)
.+...+. ..+=++|+|.+...+.+..+..... .|..||+||-+..+..
T Consensus 185 ~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 185 GMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred HHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 2333333 5778999999988877777765542 4778999998776533
No 327
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=94.78 E-value=0.11 Score=55.59 Aligned_cols=49 Identities=24% Similarity=0.280 Sum_probs=34.9
Q ss_pred HHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccc------cceEEeee
Q 001348 103 RIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKF------ESKCFMAN 151 (1094)
Q Consensus 103 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~~ 151 (1094)
.|.++|..+-..-.++.|+|.+|.|||+||..++......- ..++|+..
T Consensus 7 ~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~ 61 (226)
T cd01393 7 ALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDT 61 (226)
T ss_pred HHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEec
Confidence 34445543444567999999999999999999987654444 45567653
No 328
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.76 E-value=0.28 Score=57.66 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=23.8
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhc
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISR 141 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 141 (1094)
.++++++|+.|+||||++..++..+..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~ 282 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVM 282 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHH
Confidence 479999999999999999999986543
No 329
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.72 E-value=0.11 Score=53.19 Aligned_cols=121 Identities=20% Similarity=0.166 Sum_probs=62.7
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHHHHHhhh--ccCC-------------c
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDRLLSQIL--DESI-------------R 179 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~--~~~~-------------~ 179 (1094)
-.+++|.|..|.|||||++.++..... -.+.+++... . +.......-..+. .+.. .
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~-~-------~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~ 98 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLKP-QQGEITLDGV-P-------VSDLEKALSSLISVLNQRPYLFDTTLRNNLGRR 98 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCC-CCCEEEECCE-E-------HHHHHHHHHhhEEEEccCCeeecccHHHhhccc
Confidence 358999999999999999999874322 2334444211 0 0000000000000 0000 0
Q ss_pred ccCCCc-hHHHHHHhcCCeEEEEEecCCCh------HhHHHHhcCCCCCCCCceEEEEeCChhhhhhcCcCeEEEcc
Q 001348 180 IETPYI-PHYIRERLQCMKVFIVLDDVNKF------RQLEYLAGGLDRFGLGSRIIVTSRDKQVLEKYGVDHIYEVE 249 (1094)
Q Consensus 180 ~~~~~~-~~~l~~~L~~kr~LlVLDdv~~~------~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~~~~l~ 249 (1094)
...... .-.+.+.+-.++=+++||+.... +.+..+.... ..+..||++|.+..... . .++++.+.
T Consensus 99 LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~---~~~~tii~~sh~~~~~~-~-~d~~~~l~ 170 (178)
T cd03247 99 FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEV---LKDKTLIWITHHLTGIE-H-MDKILFLE 170 (178)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHH---cCCCEEEEEecCHHHHH-h-CCEEEEEE
Confidence 000111 23355556677788899987322 2222223222 23678999999887764 3 45666553
No 330
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.70 E-value=0.074 Score=54.20 Aligned_cols=125 Identities=18% Similarity=0.213 Sum_probs=63.7
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHHHHHhhhccCCc------------cc
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDRLLSQILDESIR------------IE 181 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~------------~~ 181 (1094)
.-.+++|.|..|.|||||++.++.... ...+.+++.... ... .. ....+. +. ...+... .+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~-~~~--~~-~~~~~~-i~-~~~q~~~~~~~~tv~~~~~LS 97 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLK-PDSGEIKVLGKD-IKK--EP-EEVKRR-IG-YLPEEPSLYENLTVRENLKLS 97 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEE-ccc--ch-Hhhhcc-EE-EEecCCccccCCcHHHHhhcC
Confidence 346899999999999999999987432 234444442210 000 00 000000 00 0000000 00
Q ss_pred CCCc-hHHHHHHhcCCeEEEEEecCCCh------HhHHHHhcCCCCCCCCceEEEEeCChhhhhhcCcCeEEEc
Q 001348 182 TPYI-PHYIRERLQCMKVFIVLDDVNKF------RQLEYLAGGLDRFGLGSRIIVTSRDKQVLEKYGVDHIYEV 248 (1094)
Q Consensus 182 ~~~~-~~~l~~~L~~kr~LlVLDdv~~~------~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~~~~l 248 (1094)
.... .-.+.+.|..++=++++|+-... ..+..+...+. ..|..||++|.+...+... .++++.+
T Consensus 98 ~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~~g~tiii~th~~~~~~~~-~d~i~~l 168 (173)
T cd03230 98 GGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK--KEGKTILLSSHILEEAERL-CDRVAIL 168 (173)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH--HCCCEEEEECCCHHHHHHh-CCEEEEE
Confidence 0011 23455666778889999987321 22223332222 2367799999988766544 4455554
No 331
>PRK03839 putative kinase; Provisional
Probab=94.70 E-value=0.024 Score=58.23 Aligned_cols=24 Identities=38% Similarity=0.675 Sum_probs=21.7
Q ss_pred EEEEEecCCCchhhHHHHHHHHHh
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
.|.|.|++|.||||+|++++++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999764
No 332
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.70 E-value=0.42 Score=54.41 Aligned_cols=150 Identities=17% Similarity=0.122 Sum_probs=80.9
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhcC
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQC 195 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~ 195 (1094)
|--.++|++|.|||++..|+++.+ +.-++.-...+.... .+ ++.++... .
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L----~ydIydLeLt~v~~n----~d-Lr~LL~~t---------------------~ 285 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL----NYDIYDLELTEVKLD----SD-LRHLLLAT---------------------P 285 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc----CCceEEeeeccccCc----HH-HHHHHHhC---------------------C
Confidence 455789999999999999999854 444555444333211 22 33333221 1
Q ss_pred CeEEEEEecCCChH--------------------hHHHHhcCCC--CCCC-CceEEE-EeCChhhhhh-----cCcCeEE
Q 001348 196 MKVFIVLDDVNKFR--------------------QLEYLAGGLD--RFGL-GSRIIV-TSRDKQVLEK-----YGVDHIY 246 (1094)
Q Consensus 196 kr~LlVLDdv~~~~--------------------~~~~l~~~~~--~~~~-gsrIii-TTR~~~v~~~-----~~~~~~~ 246 (1094)
.|-+||+.|+|-.- .+.-|+..++ |... +-|||| ||-.++-+.. -..+..+
T Consensus 286 ~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI 365 (457)
T KOG0743|consen 286 NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHI 365 (457)
T ss_pred CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEE
Confidence 34555666653221 1122222222 2233 236554 6665543321 1234567
Q ss_pred EccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHHHHHhhhhc
Q 001348 247 EVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAIKVLASFFH 300 (1094)
Q Consensus 247 ~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg~~L~ 300 (1094)
.+.--+.+....||..+..... ++ .+..+|.+...|.-+.-..++..|-
T Consensus 366 ~mgyCtf~~fK~La~nYL~~~~-~h----~L~~eie~l~~~~~~tPA~V~e~lm 414 (457)
T KOG0743|consen 366 YMGYCTFEAFKTLASNYLGIEE-DH----RLFDEIERLIEETEVTPAQVAEELM 414 (457)
T ss_pred EcCCCCHHHHHHHHHHhcCCCC-Cc----chhHHHHHHhhcCccCHHHHHHHHh
Confidence 8888888889999998874332 23 3445555555555555445555543
No 333
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.68 E-value=0.021 Score=53.03 Aligned_cols=26 Identities=35% Similarity=0.567 Sum_probs=22.2
Q ss_pred EEEEecCCCchhhHHHHHHHHHhccc
Q 001348 118 MGIWGMGGIGKTTIAGVLFNQISRKF 143 (1094)
Q Consensus 118 v~I~G~gGiGKTtLA~~v~~~~~~~F 143 (1094)
|-|+|.+|+|||++|+.++..+.+.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 56899999999999999998766544
No 334
>PRK08233 hypothetical protein; Provisional
Probab=94.68 E-value=0.024 Score=58.22 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=23.2
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHh
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
..+|+|.|.+|.||||+|+.++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 47999999999999999999998654
No 335
>PRK04040 adenylate kinase; Provisional
Probab=94.67 E-value=0.03 Score=57.75 Aligned_cols=26 Identities=23% Similarity=0.549 Sum_probs=23.5
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHh
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
.++|+|+|++|.||||+++.+..++.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 36899999999999999999999874
No 336
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.66 E-value=0.03 Score=59.01 Aligned_cols=28 Identities=43% Similarity=0.663 Sum_probs=24.6
Q ss_pred CCeEEEEEEecCCCchhhHHHHHHHHHh
Q 001348 113 PNIQIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 113 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
+...+|+|.|++|+||||||+++...+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3568999999999999999999998654
No 337
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.64 E-value=0.026 Score=47.61 Aligned_cols=23 Identities=43% Similarity=0.586 Sum_probs=21.1
Q ss_pred EEEEEecCCCchhhHHHHHHHHH
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
+|+|.|..|.||||+|+++.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999876
No 338
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.62 E-value=0.052 Score=55.32 Aligned_cols=26 Identities=35% Similarity=0.523 Sum_probs=23.2
Q ss_pred EEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
++.+.|++|.||||+++.++..++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 67899999999999999999887655
No 339
>PRK06762 hypothetical protein; Provisional
Probab=94.61 E-value=0.028 Score=56.81 Aligned_cols=25 Identities=40% Similarity=0.500 Sum_probs=22.7
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
..+|.|.|++|.||||+|+.+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999876
No 340
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.60 E-value=0.17 Score=55.05 Aligned_cols=26 Identities=31% Similarity=0.553 Sum_probs=22.4
Q ss_pred EEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
.|.+.|++|.||||+|+++...+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999876543
No 341
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=94.59 E-value=0.077 Score=64.04 Aligned_cols=50 Identities=18% Similarity=0.232 Sum_probs=41.4
Q ss_pred CCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHH
Q 001348 90 DFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 90 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
....++|....++++.+.+..-...-.-|.|+|..|.|||++|+++++.-
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s 234 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAAS 234 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 45679999999988888876544445678899999999999999999853
No 342
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.58 E-value=0.12 Score=63.47 Aligned_cols=154 Identities=18% Similarity=0.187 Sum_probs=83.7
Q ss_pred CCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhcc-cc-----ceEEeeechhhhccCCChHH
Q 001348 91 FEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRK-FE-----SKCFMANVREESEKGGGLVH 164 (1094)
Q Consensus 91 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~-----~~~~~~~~~~~~~~~~~~~~ 164 (1094)
-+..+||+.++++++..|.....+-++ ++|.+|+|||++|.-++.++... -+ ..++-.++...-
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNPv--LiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~Lv-------- 238 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNPV--LVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLV-------- 238 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCCCe--EecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHh--------
Confidence 356999999999999999765443333 57999999999999999975432 11 122322221110
Q ss_pred HHHHHHHhhhccCCcccCCCchHHHHHHh-cCCeEEEEEecCCCh-----------HhHHHHhcCCCCCCCCceEEEEeC
Q 001348 165 LRDRLLSQILDESIRIETPYIPHYIRERL-QCMKVFIVLDDVNKF-----------RQLEYLAGGLDRFGLGSRIIVTSR 232 (1094)
Q Consensus 165 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~-----------~~~~~l~~~~~~~~~gsrIiiTTR 232 (1094)
.+.....+-++..+.+.+.+ +.+++.|++|.+... +.-.-|.+.+.. |.--.|=.||-
T Consensus 239 ---------AGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR-GeL~~IGATT~ 308 (786)
T COG0542 239 ---------AGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR-GELRCIGATTL 308 (786)
T ss_pred ---------ccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhc-CCeEEEEeccH
Confidence 01111111111122222222 235899999987321 122222222221 22223445664
Q ss_pred Chhh---h---hhcCcCeEEEccCCCHHHHHHHHHhhc
Q 001348 233 DKQV---L---EKYGVDHIYEVEELNNIEALELFCKYA 264 (1094)
Q Consensus 233 ~~~v---~---~~~~~~~~~~l~~L~~~ea~~Lf~~~a 264 (1094)
++.- . .....-+.+.|...+.+++..++.-..
T Consensus 309 ~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 309 DEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 4321 0 001133688999999999999887554
No 343
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.54 E-value=0.065 Score=57.01 Aligned_cols=93 Identities=15% Similarity=0.228 Sum_probs=47.6
Q ss_pred EEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhcC-
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQC- 195 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~- 195 (1094)
.|.|.|++|+||||+|+.+++++. |....-=..+++.......+... +.++..+.....+......+.+.+..
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g--~~~is~gdllr~~~~~~t~lg~~----i~~~~~~G~lvpd~iv~~lv~~~l~~~ 81 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKEN--LKHINMGNILREEIKAKTTIGKE----IQKVVTSGNLVPDNLVIAIVKDEIAKV 81 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CcEEECChHHHHHhhcCChHHHH----HHHHHHcCCcCCHHHHHHHHHHHHHhh
Confidence 388999999999999999988652 22221111122211110112222 22222222222221125556666543
Q ss_pred ---CeEEEEEecC-CChHhHHHHh
Q 001348 196 ---MKVFIVLDDV-NKFRQLEYLA 215 (1094)
Q Consensus 196 ---kr~LlVLDdv-~~~~~~~~l~ 215 (1094)
...-+|||.. .+..|.+.+.
T Consensus 82 ~~~~~~g~iLDGfPRt~~Qa~~l~ 105 (229)
T PTZ00088 82 TDDCFKGFILDGFPRNLKQCKELG 105 (229)
T ss_pred ccccCceEEEecCCCCHHHHHHHH
Confidence 3456899998 5556665554
No 344
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.53 E-value=0.93 Score=51.55 Aligned_cols=41 Identities=29% Similarity=0.329 Sum_probs=32.4
Q ss_pred HHHHHhccccCC-------CCeEEEEEEecCCCchhhHHHHHHHHHhc
Q 001348 101 IERIKSLLCIGL-------PNIQIMGIWGMGGIGKTTIAGVLFNQISR 141 (1094)
Q Consensus 101 ~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 141 (1094)
.++|.++|..+. ..+.+|-.+|.-|.||||.|-.+++.+++
T Consensus 79 ~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk 126 (451)
T COG0541 79 YEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKK 126 (451)
T ss_pred HHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHH
Confidence 467777776321 23688999999999999999999987766
No 345
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.53 E-value=0.048 Score=57.52 Aligned_cols=23 Identities=26% Similarity=0.141 Sum_probs=21.2
Q ss_pred eEEEEEEecCCCchhhHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFN 137 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~ 137 (1094)
.+++.|.|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48999999999999999999985
No 346
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.52 E-value=0.11 Score=52.89 Aligned_cols=126 Identities=20% Similarity=0.236 Sum_probs=63.8
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHHHHHhhhccCCc---------ccCCCc
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDRLLSQILDESIR---------IETPYI 185 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~---------~~~~~~ 185 (1094)
-.+++|.|..|.|||||++.++.... ...+.+++... .... .......+.+ .-+.....- .+....
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~-~~~~--~~~~~~~~~i-~~~~q~~~~~~~tv~~~lLS~G~~ 102 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLR-PTSGRVRLDGA-DISQ--WDPNELGDHV-GYLPQDDELFSGSIAENILSGGQR 102 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC-CCCCeEEECCE-Eccc--CCHHHHHhhe-EEECCCCccccCcHHHHCcCHHHH
Confidence 35899999999999999999987543 23444444321 1000 0111111111 000000000 000111
Q ss_pred -hHHHHHHhcCCeEEEEEecCCC---h---HhHHHHhcCCCCCCCCceEEEEeCChhhhhhcCcCeEEEcc
Q 001348 186 -PHYIRERLQCMKVFIVLDDVNK---F---RQLEYLAGGLDRFGLGSRIIVTSRDKQVLEKYGVDHIYEVE 249 (1094)
Q Consensus 186 -~~~l~~~L~~kr~LlVLDdv~~---~---~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~~~~l~ 249 (1094)
.-.+.+.+-.+.=+++||+... . ..+..+..... ..|..||++|.+..... . .++++.+.
T Consensus 103 qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~-~-~d~v~~l~ 169 (173)
T cd03246 103 QRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK--AAGATRIVIAHRPETLA-S-ADRILVLE 169 (173)
T ss_pred HHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHH-h-CCEEEEEE
Confidence 2334555566677889998632 2 22333333222 23678999998887664 3 55666553
No 347
>PRK00625 shikimate kinase; Provisional
Probab=94.50 E-value=0.028 Score=57.04 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.5
Q ss_pred EEEEEecCCCchhhHHHHHHHHHh
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
.|.|+||+|+||||+|+.+.+++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998764
No 348
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.50 E-value=0.78 Score=47.90 Aligned_cols=164 Identities=17% Similarity=0.280 Sum_probs=92.8
Q ss_pred CCCeeehhHHHHHHHhccccC-----------CCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccC
Q 001348 91 FEGLIGLDARIERIKSLLCIG-----------LPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKG 159 (1094)
Q Consensus 91 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 159 (1094)
..++-|.+..++++.+.+-.. -..++-|..||++|.|||-+|++.+.+-...|-.-
T Consensus 170 YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKL------------- 236 (424)
T KOG0652|consen 170 YSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKL------------- 236 (424)
T ss_pred ccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHh-------------
Confidence 356778888888887766321 12367788999999999999999887655444211
Q ss_pred CChHHHHHHHHHhhhccCCcccCCCchHHHHHHh----cCCeEEEEEecCCCh--------------Hh--HHHHhcCCC
Q 001348 160 GGLVHLRDRLLSQILDESIRIETPYIPHYIRERL----QCMKVFIVLDDVNKF--------------RQ--LEYLAGGLD 219 (1094)
Q Consensus 160 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L----~~kr~LlVLDdv~~~--------------~~--~~~l~~~~~ 219 (1094)
.+. ++.+...+.. ...+++.+ .....+|.+|.++.. .| .-+++..++
T Consensus 237 AgP-----QLVQMfIGdG--------AkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLD 303 (424)
T KOG0652|consen 237 AGP-----QLVQMFIGDG--------AKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD 303 (424)
T ss_pred cch-----HHHhhhhcch--------HHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhc
Confidence 000 1111111111 22223222 235677888876321 11 334455555
Q ss_pred CCCCC--ceEEEEeCChhhh-----hhcCcCeEEEccCCCHHHHHHHHHhhcccCC-CCCchHHHHHHH
Q 001348 220 RFGLG--SRIIVTSRDKQVL-----EKYGVDHIYEVEELNNIEALELFCKYAFRQN-HHPQDLMVISGR 280 (1094)
Q Consensus 220 ~~~~g--srIiiTTR~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~-~~~~~~~~~~~~ 280 (1094)
.|.+. -+||..|..-.++ ..-..++.++.+.-+++...+++.-+.-+-. .+.-+++++++.
T Consensus 304 GFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRs 372 (424)
T KOG0652|consen 304 GFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARS 372 (424)
T ss_pred CCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhc
Confidence 55554 4566655543333 2223456788877777777777776664432 344567776654
No 349
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.48 E-value=0.073 Score=54.51 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=25.7
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhccccceEEe
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFM 149 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 149 (1094)
-.+++|.|..|.|||||++.++.... ...+.+++
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~ 59 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGLEE-PDSGSILI 59 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEE
Confidence 45999999999999999999986432 23444554
No 350
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.45 E-value=0.12 Score=64.86 Aligned_cols=185 Identities=15% Similarity=0.071 Sum_probs=88.4
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHH-HhccccceEEeeechhhhccCCChHHHHHHHHHhhhccCCc---ccCCCc-hHH
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQ-ISRKFESKCFMANVREESEKGGGLVHLRDRLLSQILDESIR---IETPYI-PHY 188 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~---~~~~~~-~~~ 188 (1094)
+.++++|.|+.|.||||+.+.+... +-.+ ..+++..... + . . ....++...+...... ...... ...
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~aq--~G~~Vpa~~~-~-~-~---~~~d~i~~~i~~~~si~~~LStfS~~m~~ 392 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALMFQ--SGIPIPANEH-S-E-I---PYFEEIFADIGDEQSIEQNLSTFSGHMKN 392 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHHHH--hCCCccCCcc-c-c-c---cchhheeeecChHhHHhhhhhHHHHHHHH
Confidence 3479999999999999999999864 1111 1112211100 0 0 0 0011111111000000 000000 222
Q ss_pred HHHHhc--CCeEEEEEecCCC---hHhHHH----HhcCCCCCCCCceEEEEeCChhhhhhc-CcCe--EEEccCCCHHHH
Q 001348 189 IRERLQ--CMKVFIVLDDVNK---FRQLEY----LAGGLDRFGLGSRIIVTSRDKQVLEKY-GVDH--IYEVEELNNIEA 256 (1094)
Q Consensus 189 l~~~L~--~kr~LlVLDdv~~---~~~~~~----l~~~~~~~~~gsrIiiTTR~~~v~~~~-~~~~--~~~l~~L~~~ea 256 (1094)
+...+. ..+-|+++|.... ...-.. +...+. ..|+.+|+||.+..+.... .... .+.+. ++.+ .
T Consensus 393 ~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~~-~ 468 (771)
T TIGR01069 393 ISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVL-FDEE-T 468 (771)
T ss_pred HHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcCC-C
Confidence 233333 4789999999833 222222 222222 3578999999998764322 1111 11121 1111 1
Q ss_pred HHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHHHHHhhhhcCCCHHHHHHHHHHhhc
Q 001348 257 LELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAIKVLASFFHRKSKLDWEIALQNLKQ 316 (1094)
Q Consensus 257 ~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg~~L~~~~~~~w~~~l~~l~~ 316 (1094)
.. |... +....+.. ..|-+|++++ |+|-.+.--|..+.+....+.+..+.+|..
T Consensus 469 l~-p~Yk-l~~G~~g~---S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~~ 522 (771)
T TIGR01069 469 LS-PTYK-LLKGIPGE---SYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLSA 522 (771)
T ss_pred Cc-eEEE-ECCCCCCC---cHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11 1111 11122222 2345666665 899998888888877666667777666543
No 351
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.39 E-value=0.18 Score=49.94 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=21.6
Q ss_pred EEEEEecCCCchhhHHHHHHHHHh
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
+|.|.|.+|.||||+|+.+...+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998764
No 352
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.38 E-value=0.045 Score=58.66 Aligned_cols=31 Identities=32% Similarity=0.409 Sum_probs=26.8
Q ss_pred CCCeEEEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 112 LPNIQIMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 112 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
.....+|||.|+.|.|||||++.+...++..
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 3568899999999999999999999876654
No 353
>PRK08356 hypothetical protein; Provisional
Probab=94.30 E-value=0.16 Score=52.95 Aligned_cols=21 Identities=38% Similarity=0.469 Sum_probs=19.3
Q ss_pred EEEEEEecCCCchhhHHHHHH
Q 001348 116 QIMGIWGMGGIGKTTIAGVLF 136 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~ 136 (1094)
.+|+|.|++|.||||+|+.+.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999993
No 354
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.30 E-value=0.2 Score=59.78 Aligned_cols=152 Identities=20% Similarity=0.208 Sum_probs=87.8
Q ss_pred CCCCCeeehhHHHHHHHhcccc--C--------CCCeEEEEEEecCCCchhhHHHHHHHHHhccccce---EEeeechhh
Q 001348 89 SDFEGLIGLDARIERIKSLLCI--G--------LPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESK---CFMANVREE 155 (1094)
Q Consensus 89 ~~~~~~vGr~~~~~~l~~~L~~--~--------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~---~~~~~~~~~ 155 (1094)
....+.-|.|+..+++.+.++. + ..-++-|.++|++|.|||.||++++.+..--|-.. -|+.-.-.
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVG- 225 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVG- 225 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcC-
Confidence 4456788999888887777643 1 12267789999999999999999998643333111 11100000
Q ss_pred hccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCCh---------------H-hHHHHhcCCC
Q 001348 156 SEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKF---------------R-QLEYLAGGLD 219 (1094)
Q Consensus 156 ~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~---------------~-~~~~l~~~~~ 219 (1094)
.+... ..+...+..++-++++++|.++.. + .+..++...+
T Consensus 226 ----vGAsR--------------------VRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmD 281 (596)
T COG0465 226 ----VGASR--------------------VRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMD 281 (596)
T ss_pred ----CCcHH--------------------HHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhc
Confidence 00000 022333344455788888876331 1 3666777777
Q ss_pred CCCCCceEEE--EeCChhhhh-----hcCcCeEEEccCCCHHHHHHHHHhhcc
Q 001348 220 RFGLGSRIIV--TSRDKQVLE-----KYGVDHIYEVEELNNIEALELFCKYAF 265 (1094)
Q Consensus 220 ~~~~gsrIii--TTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~af 265 (1094)
.|+...-||| .|--..|+. --..++.+.++..+-....+.+.-|+-
T Consensus 282 GF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~ 334 (596)
T COG0465 282 GFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAK 334 (596)
T ss_pred cCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhh
Confidence 6664333333 232233332 224567788888887777888876663
No 355
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.25 E-value=0.11 Score=56.74 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=20.7
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHhc
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQISR 141 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 141 (1094)
+.|.|.|.+|.||||+|+.+...+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 46889999999999999999987665
No 356
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.24 E-value=0.036 Score=57.26 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=23.3
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHH
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
+.++|+|.|++|+||||+|+.+..++
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999999764
No 357
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.20 E-value=0.15 Score=52.99 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=21.2
Q ss_pred eEEEEEEecCCCchhhHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFN 137 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~ 137 (1094)
-.+++|.|..|.|||||++.++.
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46999999999999999999985
No 358
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.20 E-value=0.036 Score=56.41 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=22.8
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
...|.|+|++|.||||+|++++.++
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999876
No 359
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.09 E-value=0.11 Score=52.47 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=25.0
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHhccccce
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQISRKFESK 146 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~ 146 (1094)
+.|.+.|.+|+||||+|++++..+++.-...
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~v 32 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRV 32 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhc
Confidence 4577899999999999999999776654433
No 360
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.06 E-value=0.083 Score=62.01 Aligned_cols=92 Identities=20% Similarity=0.208 Sum_probs=53.5
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhccc-cceEEeeechhhhccCCChHHHHHHHHHhhhccCCcccCC------CchH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRKF-ESKCFMANVREESEKGGGLVHLRDRLLSQILDESIRIETP------YIPH 187 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~------~~~~ 187 (1094)
-..++|+|.+|.|||||++.+++.+.... +..+++.-+.+.... +.++.+.+-.++.......... ...-
T Consensus 416 GQR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgERpeE---Vtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai 492 (672)
T PRK12678 416 GQRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDERPEE---VTDMQRSVKGEVIASTFDRPPSDHTTVAELAI 492 (672)
T ss_pred CCEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCchhh---HHHHHHhccceEEEECCCCCHHHHHHHHHHHH
Confidence 35678999999999999999999775433 444555555554332 3444444322222221111100 1112
Q ss_pred HHHHHh--cCCeEEEEEecCCChH
Q 001348 188 YIRERL--QCMKVFIVLDDVNKFR 209 (1094)
Q Consensus 188 ~l~~~L--~~kr~LlVLDdv~~~~ 209 (1094)
.+.+++ .++.|||++|++....
T Consensus 493 ~~Ae~fre~G~dVlillDSlTR~A 516 (672)
T PRK12678 493 ERAKRLVELGKDVVVLLDSITRLG 516 (672)
T ss_pred HHHHHHHHcCCCEEEEEeCchHHH
Confidence 233444 6789999999996553
No 361
>PRK06547 hypothetical protein; Provisional
Probab=94.04 E-value=0.047 Score=55.36 Aligned_cols=27 Identities=37% Similarity=0.420 Sum_probs=24.1
Q ss_pred CCeEEEEEEecCCCchhhHHHHHHHHH
Q 001348 113 PNIQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 113 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
....+|+|.|++|.||||+|+.+....
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999999864
No 362
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=94.03 E-value=0.4 Score=59.82 Aligned_cols=50 Identities=16% Similarity=0.217 Sum_probs=37.0
Q ss_pred CCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHH
Q 001348 90 DFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 90 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
..+.++|....+.++.+.+..-...-.-|.|+|..|.||+++|+++++.-
T Consensus 323 ~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s 372 (638)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNES 372 (638)
T ss_pred cccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhC
Confidence 35678888888777776664322223347799999999999999998853
No 363
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.01 E-value=0.28 Score=51.14 Aligned_cols=23 Identities=22% Similarity=0.057 Sum_probs=21.4
Q ss_pred EEEEEEecCCCchhhHHHHHHHH
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQ 138 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~ 138 (1094)
++++|.|+.|.|||||++.+...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 79999999999999999999864
No 364
>PRK06217 hypothetical protein; Validated
Probab=94.00 E-value=0.18 Score=51.94 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=21.2
Q ss_pred EEEEEecCCCchhhHHHHHHHHH
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
.|.|.|++|.||||+|+++..++
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 365
>PRK14528 adenylate kinase; Provisional
Probab=94.00 E-value=0.12 Score=53.20 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.2
Q ss_pred EEEEEEecCCCchhhHHHHHHHHH
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
+.|.|.|++|.||||+|+.+....
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999998765
No 366
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.99 E-value=0.056 Score=51.87 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=22.6
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
-.+|.+.|.-|.||||+++.++..+
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4589999999999999999999864
No 367
>PRK13947 shikimate kinase; Provisional
Probab=93.98 E-value=0.04 Score=55.97 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=22.1
Q ss_pred EEEEEecCCCchhhHHHHHHHHHhc
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQISR 141 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~~~~ 141 (1094)
-|.|+||+|+||||+|+.+++++.-
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999987643
No 368
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.96 E-value=0.32 Score=53.56 Aligned_cols=54 Identities=19% Similarity=0.102 Sum_probs=35.9
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHhcc-ccceEEeeechhhhccCCChHHHHHHHHHhhh
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQISRK-FESKCFMANVREESEKGGGLVHLRDRLLSQIL 174 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~ 174 (1094)
.-.++.|.|.+|+||||+|.+++.....+ =..++|+.. . ....++.+.+.+.+.
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~-E------~~~~~~~~r~~~~~~ 83 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL-E------EPVVRTARRLLGQYA 83 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc-c------cCHHHHHHHHHHHHh
Confidence 34588899999999999999998876544 344556642 1 223455565555443
No 369
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.94 E-value=0.2 Score=54.18 Aligned_cols=24 Identities=42% Similarity=0.649 Sum_probs=21.7
Q ss_pred eEEEEEEecCCCchhhHHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQ 138 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~ 138 (1094)
-.+++|+|..|+|||||++.++..
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999874
No 370
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.92 E-value=0.044 Score=55.99 Aligned_cols=26 Identities=35% Similarity=0.482 Sum_probs=23.6
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHh
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
..+|+|-||=|+||||||+++++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999999765
No 371
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=93.92 E-value=0.076 Score=55.97 Aligned_cols=44 Identities=27% Similarity=0.341 Sum_probs=34.3
Q ss_pred cccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeee
Q 001348 108 LCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMAN 151 (1094)
Q Consensus 108 L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~ 151 (1094)
|..+-..-.++-|+|.+|.|||++|.+++......-..++|++.
T Consensus 5 l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~ 48 (209)
T TIGR02237 5 LGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDT 48 (209)
T ss_pred hcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 33333456899999999999999999999877666667788864
No 372
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=93.91 E-value=0.32 Score=49.13 Aligned_cols=80 Identities=15% Similarity=0.115 Sum_probs=44.3
Q ss_pred EEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhcC-
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQC- 195 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~- 195 (1094)
++.|.|.+|.|||++|.++... .....+|+..... .+ .++++.+..-.......-...+....+.+.+..
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~~~-----~d-~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~ 71 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE---LGGPVTYIATAEA-----FD-DEMAERIARHRKRRPAHWRTIETPRDLVSALKEL 71 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh---cCCCeEEEEccCc-----CC-HHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc
Confidence 3678999999999999998765 2345667653321 22 244444443222221111122224455555532
Q ss_pred -CeEEEEEecC
Q 001348 196 -MKVFIVLDDV 205 (1094)
Q Consensus 196 -kr~LlVLDdv 205 (1094)
+.-.+++|.+
T Consensus 72 ~~~~~VLIDcl 82 (169)
T cd00544 72 DPGDVVLIDCL 82 (169)
T ss_pred CCCCEEEEEcH
Confidence 2337889986
No 373
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.90 E-value=0.12 Score=54.87 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=20.5
Q ss_pred EEEEEecCCCchhhHHHHHHHHH
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
.|.|.|++|.||||+|+.++.++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 374
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.89 E-value=0.16 Score=58.81 Aligned_cols=48 Identities=27% Similarity=0.297 Sum_probs=36.8
Q ss_pred CCeeehhHHHHHHHhccc-----cCCCCeEEEEEEecCCCchhhHHHHHHHHH
Q 001348 92 EGLIGLDARIERIKSLLC-----IGLPNIQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 92 ~~~vGr~~~~~~l~~~L~-----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
+++-=-...++++..||. ...-+-++..|.|++|+||||..+.++..+
T Consensus 82 eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 82 EELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred HHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 334444566888888887 334456899999999999999999988753
No 375
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.86 E-value=0.075 Score=54.27 Aligned_cols=28 Identities=32% Similarity=0.380 Sum_probs=24.4
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHhc
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQISR 141 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 141 (1094)
...+|+|.|++|.||||+|++++..+..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3469999999999999999999997654
No 376
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.86 E-value=0.16 Score=60.59 Aligned_cols=76 Identities=22% Similarity=0.380 Sum_probs=45.4
Q ss_pred CCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHH
Q 001348 113 PNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRER 192 (1094)
Q Consensus 113 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 192 (1094)
++-+|..++|++|+||||||..++++-. |. +-=.+ +|+. .....+.+.|...+.......
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaG--Ys--VvEIN---ASDe-Rt~~~v~~kI~~avq~~s~l~------------ 383 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAG--YS--VVEIN---ASDE-RTAPMVKEKIENAVQNHSVLD------------ 383 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcC--ce--EEEec---cccc-ccHHHHHHHHHHHHhhccccc------------
Confidence 4568999999999999999999997531 21 11112 2222 334455555544443221110
Q ss_pred hcCCeEEEEEecCCCh
Q 001348 193 LQCMKVFIVLDDVNKF 208 (1094)
Q Consensus 193 L~~kr~LlVLDdv~~~ 208 (1094)
-..+..-||+|.++-.
T Consensus 384 adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 384 ADSRPVCLVIDEIDGA 399 (877)
T ss_pred cCCCcceEEEecccCC
Confidence 0146788999998654
No 377
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=93.84 E-value=0.53 Score=51.97 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=21.9
Q ss_pred CCeEEEEEEecCCCchhhHHHHHHH
Q 001348 113 PNIQIMGIWGMGGIGKTTIAGVLFN 137 (1094)
Q Consensus 113 ~~~~vv~I~G~gGiGKTtLA~~v~~ 137 (1094)
+++..|.+.|.+|.|||.||-+..-
T Consensus 243 ~dI~lV~L~G~AGtGKTlLALaAgl 267 (436)
T COG1875 243 DDIDLVSLGGKAGTGKTLLALAAGL 267 (436)
T ss_pred CCCCeEEeeccCCccHhHHHHHHHH
Confidence 5789999999999999999987653
No 378
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=93.83 E-value=0.097 Score=51.09 Aligned_cols=53 Identities=32% Similarity=0.613 Sum_probs=43.2
Q ss_pred CCCEEEeEeecCCccccccccCcHHHHHHHHHHhhccChHHHHHHHHHHHHHhh
Q 001348 2 NGQKVLPVFYHVDPSDVRKQTGRVGDAFVVHEKQFREMPEKVQKWRAVLTEASN 55 (1094)
Q Consensus 2 ~~~~v~pvfy~vdps~vr~q~g~~~~~~~~~~~~~~~~~~~~~~w~~al~~~a~ 55 (1094)
..+.||||||+..|++++.+.+.++.++.....++.....+ +.|+.++..+++
T Consensus 87 ~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~~ 139 (140)
T smart00255 87 GGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKE-RFWKKALYAVPS 139 (140)
T ss_pred CCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhH-HHHHHHHHHhcc
Confidence 35789999999999999999999999999985555443333 789999887754
No 379
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=93.83 E-value=0.058 Score=56.97 Aligned_cols=54 Identities=28% Similarity=0.426 Sum_probs=43.0
Q ss_pred CCCCeeehhHHHHHHHhccccC-----------CCCeEEEEEEecCCCchhhHHHHHHHHHhccc
Q 001348 90 DFEGLIGLDARIERIKSLLCIG-----------LPNIQIMGIWGMGGIGKTTIAGVLFNQISRKF 143 (1094)
Q Consensus 90 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 143 (1094)
...++=|.++.+++|.+..... -..++-|.++|.+|.|||-||++|+|+-+..|
T Consensus 183 ty~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATF 247 (440)
T KOG0726|consen 183 TYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATF 247 (440)
T ss_pred hhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhh
Confidence 3456778999999999876532 13467888999999999999999999876665
No 380
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=93.82 E-value=0.98 Score=54.65 Aligned_cols=51 Identities=16% Similarity=0.105 Sum_probs=37.8
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHH
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQ 138 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 138 (1094)
....+.++|....+.++.+.+..-...-.-|.|+|..|.||+++|++++..
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHh
Confidence 345678999998888777666432222334779999999999999998764
No 381
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.82 E-value=0.56 Score=51.11 Aligned_cols=36 Identities=28% Similarity=0.395 Sum_probs=26.9
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHhccccceEEe
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFM 149 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 149 (1094)
...+++++|.+|+||||+++.+...+..+=....++
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i 109 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFI 109 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEE
Confidence 347999999999999999999988765432233444
No 382
>PRK13531 regulatory ATPase RavA; Provisional
Probab=93.81 E-value=0.051 Score=63.21 Aligned_cols=46 Identities=24% Similarity=0.167 Sum_probs=38.2
Q ss_pred CCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhc
Q 001348 92 EGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISR 141 (1094)
Q Consensus 92 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 141 (1094)
..++|+++.++.+...+..+ .-|.|.|++|+|||++|+++......
T Consensus 20 ~~i~gre~vI~lll~aalag----~hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred hhccCcHHHHHHHHHHHccC----CCEEEECCCChhHHHHHHHHHHHhcc
Confidence 36899999999998877543 36779999999999999999986543
No 383
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=93.80 E-value=0.036 Score=61.10 Aligned_cols=128 Identities=20% Similarity=0.169 Sum_probs=70.1
Q ss_pred CCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHHHHH
Q 001348 92 EGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDRLLS 171 (1094)
Q Consensus 92 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 171 (1094)
+.++-.....+++.++|...-..-..|.|.|..|.||||+++++...+...-...+-+.+..|..-... .
T Consensus 104 e~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~----------~ 173 (270)
T PF00437_consen 104 EDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGP----------N 173 (270)
T ss_dssp CCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCS----------S
T ss_pred hhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeeccc----------c
Confidence 344434444455555554321235789999999999999999999876655223344443333211100 0
Q ss_pred hhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCChHhHHHHhcCCCCCCCCceE-EEEeCCh
Q 001348 172 QILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKFRQLEYLAGGLDRFGLGSRI-IVTSRDK 234 (1094)
Q Consensus 172 ~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrI-iiTTR~~ 234 (1094)
.+.... ........+.++..|+...=.+|++.+.+.+.+..+... ..|..+ +-|..-.
T Consensus 174 ~~~~~~-~~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~~a~----~tGh~~~~tT~Ha~ 232 (270)
T PF00437_consen 174 QIQIQT-RRDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAIQAA----NTGHLGSLTTLHAN 232 (270)
T ss_dssp EEEEEE-ETTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHHHHH----HTT-EEEEEEEE-S
T ss_pred eEEEEe-ecCcccHHHHHHHHhcCCCCcccccccCCHhHHHHHHhh----ccCCceeeeeeecC
Confidence 000000 011122277888889988889999999988887774433 456677 5555433
No 384
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.80 E-value=0.065 Score=54.89 Aligned_cols=26 Identities=46% Similarity=0.585 Sum_probs=22.9
Q ss_pred EEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
+|+|.|.+|.||||||+.+...+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~ 26 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVN 26 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 58999999999999999999876543
No 385
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=93.79 E-value=0.52 Score=53.07 Aligned_cols=85 Identities=14% Similarity=0.155 Sum_probs=48.5
Q ss_pred CeEEEEEecCCCh--HhHHHHhcCCCCCCCCceEEEEeCChh-hhhh-cCcCeEEEccCCCHHHHHHHHHhhcccCCCCC
Q 001348 196 MKVFIVLDDVNKF--RQLEYLAGGLDRFGLGSRIIVTSRDKQ-VLEK-YGVDHIYEVEELNNIEALELFCKYAFRQNHHP 271 (1094)
Q Consensus 196 kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~ 271 (1094)
+|++ |+|+++.. ..-..+...+.....+..+|++|.+.+ +... ......+.+..++.+++.+.+.... . .
T Consensus 114 ~kV~-iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~-~ 187 (325)
T PRK08699 114 LRVI-LIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG----V-A 187 (325)
T ss_pred ceEE-EEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC----C-C
Confidence 4454 55887554 233333333332234566777777654 4333 2235788999999999998886542 1 1
Q ss_pred chHHHHHHHHHHHhCCCchH
Q 001348 272 QDLMVISGRVVDYARGNPLA 291 (1094)
Q Consensus 272 ~~~~~~~~~i~~~~~GlPLa 291 (1094)
... ..+..++|-|+.
T Consensus 188 ~~~-----~~l~~~~g~p~~ 202 (325)
T PRK08699 188 EPE-----ERLAFHSGAPLF 202 (325)
T ss_pred cHH-----HHHHHhCCChhh
Confidence 111 123568898864
No 386
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.77 E-value=0.18 Score=52.77 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=23.2
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHh
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
.-.+++|+|..|.|||||++.+.....
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 346999999999999999999987543
No 387
>PRK14529 adenylate kinase; Provisional
Probab=93.76 E-value=0.15 Score=53.86 Aligned_cols=91 Identities=23% Similarity=0.143 Sum_probs=48.3
Q ss_pred EEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhcCC-
Q 001348 118 MGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQCM- 196 (1094)
Q Consensus 118 v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k- 196 (1094)
|.|.|++|.||||+|+.++.++. |.+..--..+++.......+... +.++.......++.-....++++|...
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~--~~~is~gdllr~~i~~~t~lg~~----i~~~i~~G~lvpdei~~~lv~~~l~~~~ 76 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYD--LAHIESGAIFREHIGGGTELGKK----AKEYIDRGDLVPDDITIPMILETLKQDG 76 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC--CCCcccchhhhhhccCCChHHHH----HHHHHhccCcchHHHHHHHHHHHHhccC
Confidence 77899999999999999998763 22211111112211110111122 223332322223322366777777542
Q ss_pred eEEEEEecC-CChHhHHHH
Q 001348 197 KVFIVLDDV-NKFRQLEYL 214 (1094)
Q Consensus 197 r~LlVLDdv-~~~~~~~~l 214 (1094)
.-=+|||+. .+.+|.+.|
T Consensus 77 ~~g~iLDGfPRt~~Qa~~l 95 (223)
T PRK14529 77 KNGWLLDGFPRNKVQAEKL 95 (223)
T ss_pred CCcEEEeCCCCCHHHHHHH
Confidence 345899999 445665544
No 388
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=93.76 E-value=0.12 Score=54.55 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=19.7
Q ss_pred EEEEecCCCchhhHHHHHHHHH
Q 001348 118 MGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 118 v~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
|.|.|++|.||||+|+.++.+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6799999999999999998754
No 389
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.75 E-value=0.23 Score=58.65 Aligned_cols=50 Identities=22% Similarity=0.230 Sum_probs=36.2
Q ss_pred HHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEee
Q 001348 101 IERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMA 150 (1094)
Q Consensus 101 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 150 (1094)
+.++.++|..+-..-.++.|.|.+|+|||||+.+++.....+-..++|+.
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34555666544344579999999999999999999987764434456664
No 390
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=93.74 E-value=1.5 Score=49.10 Aligned_cols=48 Identities=25% Similarity=0.214 Sum_probs=33.2
Q ss_pred EEEccCCCHHHHHHHHHhhcccCCCCC-chHHHHHHHHHHHhCCCchHH
Q 001348 245 IYEVEELNNIEALELFCKYAFRQNHHP-QDLMVISGRVVDYARGNPLAI 292 (1094)
Q Consensus 245 ~~~l~~L~~~ea~~Lf~~~af~~~~~~-~~~~~~~~~i~~~~~GlPLal 292 (1094)
.++|++++.+|+..++..++-.+-... ...+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999988874432222 233344556666669998654
No 391
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.72 E-value=0.083 Score=55.16 Aligned_cols=37 Identities=24% Similarity=0.316 Sum_probs=28.8
Q ss_pred CCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEe
Q 001348 113 PNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFM 149 (1094)
Q Consensus 113 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 149 (1094)
....+|+|.|++|.||||||+.+...+...-...+++
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~l 58 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLL 58 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 3567999999999999999999998765443334555
No 392
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.71 E-value=0.14 Score=53.53 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=21.7
Q ss_pred eEEEEEEecCCCchhhHHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQ 138 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~ 138 (1094)
-.+++|.|..|.|||||++.++..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999998864
No 393
>PRK14526 adenylate kinase; Provisional
Probab=93.67 E-value=0.14 Score=53.90 Aligned_cols=22 Identities=41% Similarity=0.551 Sum_probs=19.7
Q ss_pred EEEEecCCCchhhHHHHHHHHH
Q 001348 118 MGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 118 v~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
|+|.|++|.||||+|+.++..+
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999998754
No 394
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.67 E-value=0.034 Score=35.05 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=11.9
Q ss_pred CccEEEeccCCCCcccccccc
Q 001348 569 NVRELYLRGTPIEYVPSSIDC 589 (1094)
Q Consensus 569 ~L~~L~L~~~~l~~lp~~i~~ 589 (1094)
+|++|+|++|.++.+|++|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 355666666666666555443
No 395
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.65 E-value=0.43 Score=49.45 Aligned_cols=62 Identities=16% Similarity=0.225 Sum_probs=38.9
Q ss_pred hHHHHHHhcCCeEEEEEecCCChHhHHHH---hcCCCC-CCCCceEEEEeCChhhhhhcCcCeEEE
Q 001348 186 PHYIRERLQCMKVFIVLDDVNKFRQLEYL---AGGLDR-FGLGSRIIVTSRDKQVLEKYGVDHIYE 247 (1094)
Q Consensus 186 ~~~l~~~L~~kr~LlVLDdv~~~~~~~~l---~~~~~~-~~~gsrIiiTTR~~~v~~~~~~~~~~~ 247 (1094)
...+.+.+--++=|.|||..|+--+++++ ...... ..+|+.+||.|....++.....+.++-
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhv 217 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHV 217 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEE
Confidence 45566666677889999987654333332 211111 245778888888888888765555443
No 396
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=93.65 E-value=0.083 Score=59.28 Aligned_cols=109 Identities=17% Similarity=0.173 Sum_probs=62.5
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHHHHHhhhccC--CcccCCCchHHHHH
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDRLLSQILDES--IRIETPYIPHYIRE 191 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~--~~~~~~~~~~~l~~ 191 (1094)
.-..++|.|..|.||||+++++...+... ...+.+.+..+........ . .+.... .........+.++.
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~~-~~iv~ied~~El~~~~~~~-------~-~l~~~~~~~~~~~~~~~~~l~~ 213 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPKD-ERIITIEDTREIFLPHPNY-------V-HLFYSKGGQGLAKVTPKDLLQS 213 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCcc-ccEEEEcCccccCCCCCCE-------E-EEEecCCCCCcCccCHHHHHHH
Confidence 34689999999999999999998765433 2344444433322110000 0 011000 11111222667788
Q ss_pred HhcCCeEEEEEecCCChHhHHHHhcCCCCCCCCce-EEEEeCChh
Q 001348 192 RLQCMKVFIVLDDVNKFRQLEYLAGGLDRFGLGSR-IIVTSRDKQ 235 (1094)
Q Consensus 192 ~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsr-IiiTTR~~~ 235 (1094)
.|+...=.+|+|.+...+.++.+... . .|.. ++.|+....
T Consensus 214 ~Lr~~pd~ii~gE~r~~e~~~~l~a~-~---~g~~~~i~T~Ha~~ 254 (308)
T TIGR02788 214 CLRMRPDRIILGELRGDEAFDFIRAV-N---TGHPGSITTLHAGS 254 (308)
T ss_pred HhcCCCCeEEEeccCCHHHHHHHHHH-h---cCCCeEEEEEeCCC
Confidence 88888888999999987766554433 2 2332 466665443
No 397
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=93.61 E-value=0.92 Score=54.42 Aligned_cols=48 Identities=19% Similarity=0.190 Sum_probs=38.2
Q ss_pred CCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHH
Q 001348 91 FEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQ 138 (1094)
Q Consensus 91 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 138 (1094)
...++|....+.++...+..-...-..|.|.|.+|.|||++|+.++..
T Consensus 137 ~~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 137 TTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred cccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 356999998888887777543334456889999999999999999884
No 398
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.61 E-value=0.069 Score=55.11 Aligned_cols=93 Identities=18% Similarity=0.156 Sum_probs=53.6
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHHHHHhhhccCC-c--ccCCCchHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDRLLSQILDESI-R--IETPYIPHYIRE 191 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~-~--~~~~~~~~~l~~ 191 (1094)
-..++|.|..|.||||+++++...+... ...+.+.+..+.... . ... .++..... . .......+.++.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~~-~------~~~-~~~~~~~~~~~~~~~~~~~~~l~~ 95 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQLP-H------PNW-VRLVTRPGNVEGSGEVTMADLLRS 95 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCCC-C------CCE-EEEEEecCCCCCCCccCHHHHHHH
Confidence 4589999999999999999998866532 233434332221110 0 000 00110000 0 011122567777
Q ss_pred HhcCCeEEEEEecCCChHhHHHHhc
Q 001348 192 RLQCMKVFIVLDDVNKFRQLEYLAG 216 (1094)
Q Consensus 192 ~L~~kr~LlVLDdv~~~~~~~~l~~ 216 (1094)
.++..+=.+|++.+.+.+.++.+..
T Consensus 96 ~lR~~pd~i~igEir~~ea~~~~~a 120 (186)
T cd01130 96 ALRMRPDRIIVGEVRGGEALDLLQA 120 (186)
T ss_pred HhccCCCEEEEEccCcHHHHHHHHH
Confidence 7888888899999988887665443
No 399
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.57 E-value=0.056 Score=55.22 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=22.4
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHh
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
++|.+.|++|.||||+|+++.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999988654
No 400
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.55 E-value=0.18 Score=53.59 Aligned_cols=42 Identities=21% Similarity=0.364 Sum_probs=30.5
Q ss_pred HHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 101 IERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 101 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
..++.+.+.....+..+|||.|+||.|||||.-++...++.+
T Consensus 15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 344444444445567899999999999999999999877654
No 401
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.55 E-value=0.17 Score=58.84 Aligned_cols=91 Identities=20% Similarity=0.300 Sum_probs=52.4
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHHHHHhhh-ccCCc---ccCC-------
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDRLLSQIL-DESIR---IETP------- 183 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~-~~~~~---~~~~------- 183 (1094)
-..++|.|.+|+|||||+.++....+.+....+-+.-+.+.. ..+.++.+.++..-. ....- ..+.
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGER~---rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERT---REGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCc---HHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 357899999999999999999887655434343344444432 234455555443211 11000 0011
Q ss_pred --CchHHHHHHh---cCCeEEEEEecCCCh
Q 001348 184 --YIPHYIRERL---QCMKVFIVLDDVNKF 208 (1094)
Q Consensus 184 --~~~~~l~~~L---~~kr~LlVLDdv~~~ 208 (1094)
...-.+.+++ ++++|||++||+...
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchHHH
Confidence 0122245555 679999999999544
No 402
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.54 E-value=0.094 Score=51.19 Aligned_cols=34 Identities=24% Similarity=0.435 Sum_probs=25.8
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHhcc-ccceEEe
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQISRK-FESKCFM 149 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~ 149 (1094)
++|.|+|..|.|||||++.+.+.+.++ +...++.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik 35 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIK 35 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEE
Confidence 489999999999999999999987754 3333343
No 403
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=93.53 E-value=0.41 Score=51.61 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=20.8
Q ss_pred EEEEEecCCCchhhHHHHHHHHHh
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
+..|+|++|+||||||..++..+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 457899999999999999988654
No 404
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.53 E-value=0.049 Score=57.77 Aligned_cols=24 Identities=46% Similarity=0.577 Sum_probs=22.1
Q ss_pred EEEEEecCCCchhhHHHHHHHHHh
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
+|||.|.+|.||||+|+.+...+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998775
No 405
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.50 E-value=0.25 Score=58.27 Aligned_cols=50 Identities=20% Similarity=0.244 Sum_probs=36.4
Q ss_pred HHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEee
Q 001348 101 IERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMA 150 (1094)
Q Consensus 101 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 150 (1094)
+.++.++|..+-..-.++.|.|.+|+|||||+.+++.....+-..++|+.
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 45566666544445679999999999999999999887655434456664
No 406
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.46 E-value=0.074 Score=54.94 Aligned_cols=51 Identities=25% Similarity=0.425 Sum_probs=38.6
Q ss_pred CeeehhHHHHHHHhcccc-----------CCCCeEEEEEEecCCCchhhHHHHHHHHHhccc
Q 001348 93 GLIGLDARIERIKSLLCI-----------GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKF 143 (1094)
Q Consensus 93 ~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 143 (1094)
++-|.|-..+++.+.... +-+.++-|.++|++|.|||.||++|++.-...|
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~f 217 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF 217 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhe
Confidence 466788777777765532 224578899999999999999999999755543
No 407
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=93.43 E-value=0.14 Score=59.07 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.8
Q ss_pred eEEEEEEecCCCchhhHHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQ 138 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~ 138 (1094)
-+-.||+|.+|.||||+.++++.+
T Consensus 101 g~rygLiG~nG~Gkst~L~~i~~~ 124 (614)
T KOG0927|consen 101 GRRYGLIGPNGSGKSTFLRAIAGR 124 (614)
T ss_pred CceEEEEcCCCCcHhHHHHHHhcC
Confidence 467899999999999999999974
No 408
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=93.42 E-value=0.31 Score=50.60 Aligned_cols=22 Identities=32% Similarity=0.301 Sum_probs=20.0
Q ss_pred EEEEecCCCchhhHHHHHHHHH
Q 001348 118 MGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 118 v~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
|.|.|++|.||||+|+.++.++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998864
No 409
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=93.42 E-value=0.99 Score=53.20 Aligned_cols=72 Identities=25% Similarity=0.311 Sum_probs=43.5
Q ss_pred eehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHh-ccccceEEeeechhhhccCCChHHHHHHHHHhh
Q 001348 95 IGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQIS-RKFESKCFMANVREESEKGGGLVHLRDRLLSQI 173 (1094)
Q Consensus 95 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l 173 (1094)
.|...-...|-+++. +-..-.++.|-|.+|+||||+|..++..+. .+-..++|++- | ....++...+++..
T Consensus 175 ~gi~tG~~~LD~~~~-G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSl--E-----m~~~~l~~Rl~~~~ 246 (421)
T TIGR03600 175 TGLSTGLPKLDRLTN-GLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSL--E-----MSAEQLGERLLASK 246 (421)
T ss_pred cceeCCChhHHHHhc-CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC--C-----CCHHHHHHHHHHHH
Confidence 344444444444443 223345888999999999999999997654 22233455531 1 34556777776654
Q ss_pred h
Q 001348 174 L 174 (1094)
Q Consensus 174 ~ 174 (1094)
.
T Consensus 247 ~ 247 (421)
T TIGR03600 247 S 247 (421)
T ss_pred c
Confidence 3
No 410
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.37 E-value=0.072 Score=55.93 Aligned_cols=40 Identities=28% Similarity=0.336 Sum_probs=31.1
Q ss_pred CCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeech
Q 001348 113 PNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVR 153 (1094)
Q Consensus 113 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~ 153 (1094)
+....|.++||+|.||||..++++..+..++.. .|+.+..
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p-pYviNLD 56 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP-PYVINLD 56 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCC-CeEEeCC
Confidence 356788899999999999999999987776543 4554544
No 411
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.36 E-value=0.05 Score=56.80 Aligned_cols=23 Identities=48% Similarity=0.719 Sum_probs=21.2
Q ss_pred EEEEEecCCCchhhHHHHHHHHH
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
+|||.|.+|+||||||+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998866
No 412
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=93.35 E-value=0.08 Score=60.34 Aligned_cols=51 Identities=25% Similarity=0.232 Sum_probs=36.2
Q ss_pred CeeehhHHHHHHHhcccc------------CCCCeEEEEEEecCCCchhhHHHHHHHHHhccc
Q 001348 93 GLIGLDARIERIKSLLCI------------GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKF 143 (1094)
Q Consensus 93 ~~vGr~~~~~~l~~~L~~------------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 143 (1094)
++||.+...+.+.-.+.. +....+-|.++|++|+||||+|++++..+...|
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~f 75 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 75 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 567777777666544431 111246789999999999999999999765443
No 413
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.34 E-value=0.57 Score=57.94 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=23.2
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHh
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
.++|+++|+.|+||||++..++..+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~ 210 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCV 210 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHH
Confidence 47999999999999999999998653
No 414
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.33 E-value=0.055 Score=55.50 Aligned_cols=23 Identities=43% Similarity=0.608 Sum_probs=21.2
Q ss_pred EEEEEecCCCchhhHHHHHHHHH
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
+|+|.|.+|.||||+|+.++..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 415
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=93.33 E-value=0.15 Score=58.05 Aligned_cols=104 Identities=18% Similarity=0.341 Sum_probs=58.1
Q ss_pred CCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHH
Q 001348 113 PNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRER 192 (1094)
Q Consensus 113 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 192 (1094)
..++-+-|||..|.|||.|+-.+|+.+...-..++.+.. =+.++.+.+ .++.+ ..+....+.+.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~---------Fm~~vh~~l-~~~~~------~~~~l~~va~~ 123 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHE---------FMLDVHSRL-HQLRG------QDDPLPQVADE 123 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCccccccccccH---------HHHHHHHHH-HHHhC------CCccHHHHHHH
Confidence 357889999999999999999999964332111221110 011222222 11111 11225566677
Q ss_pred hcCCeEEEEEecC--CCh---HhHHHHhcCCCCCCCCceEEEEeCChh
Q 001348 193 LQCMKVFIVLDDV--NKF---RQLEYLAGGLDRFGLGSRIIVTSRDKQ 235 (1094)
Q Consensus 193 L~~kr~LlVLDdv--~~~---~~~~~l~~~~~~~~~gsrIiiTTR~~~ 235 (1094)
+.++..||.||.+ .|. .-+..|...+ +..|. |||+|-+..
T Consensus 124 l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l--~~~gv-vlVaTSN~~ 168 (362)
T PF03969_consen 124 LAKESRLLCFDEFQVTDIADAMILKRLFEAL--FKRGV-VLVATSNRP 168 (362)
T ss_pred HHhcCCEEEEeeeeccchhHHHHHHHHHHHH--HHCCC-EEEecCCCC
Confidence 7777889999975 333 2344444433 23454 666666554
No 416
>PRK13949 shikimate kinase; Provisional
Probab=93.27 E-value=0.064 Score=54.36 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.7
Q ss_pred EEEEEecCCCchhhHHHHHHHHHh
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
-|.|+|++|.||||+|+.++..+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998764
No 417
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=93.24 E-value=0.19 Score=58.78 Aligned_cols=90 Identities=24% Similarity=0.290 Sum_probs=51.3
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhcc-ccceEEeeechhhhccCCChHHHHHHHHHhhh-ccCCc---ccCCC-----
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRK-FESKCFMANVREESEKGGGLVHLRDRLLSQIL-DESIR---IETPY----- 184 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~-~~~~~---~~~~~----- 184 (1094)
-..++|.|.+|+|||||+.++.+....+ -+.++|. -+.+.. ..+.++...+...-. ....- ..+..
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~-liGER~---rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~ 218 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFA-GVGERS---REGHELYHEMKESGVLDKTVMVYGQMNEPPGARM 218 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEE-cCCcch---HHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHH
Confidence 3578999999999999999999876543 3444444 444432 224444444443211 11000 00110
Q ss_pred ----chHHHHHHh---cCCeEEEEEecCCCh
Q 001348 185 ----IPHYIRERL---QCMKVFIVLDDVNKF 208 (1094)
Q Consensus 185 ----~~~~l~~~L---~~kr~LlVLDdv~~~ 208 (1094)
..-.+.+++ +++++|+++||+...
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 249 (461)
T PRK12597 219 RVVLTGLTIAEYLRDEEKEDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEeccchHH
Confidence 122344555 378999999999443
No 418
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.23 E-value=0.065 Score=54.95 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=22.1
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHh
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
++++|.|+.|+||||||+++...+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988653
No 419
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=93.21 E-value=0.21 Score=57.39 Aligned_cols=22 Identities=41% Similarity=0.700 Sum_probs=20.1
Q ss_pred EEEEEEecCCCchhhHHHHHHH
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFN 137 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~ 137 (1094)
..++|+|+.|.|||||||.+.-
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 4789999999999999999865
No 420
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=93.19 E-value=0.2 Score=52.66 Aligned_cols=87 Identities=20% Similarity=0.319 Sum_probs=48.1
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHHHHHhh-hccCCc---ccCCCc------
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDRLLSQI-LDESIR---IETPYI------ 185 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l-~~~~~~---~~~~~~------ 185 (1094)
..++|.|.+|.|||+|+..+.+..... ..+|+.. .+.. ..+.++.+++...- .....- ..+...
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~~d--~~V~~~i-Ger~---~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~ 89 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQDAD--VVVYALI-GERG---REVTEFIEELKGEGALERTVVVAATSDEPPAARYRA 89 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCTTT--EEEEEEE-SECH---HHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccccc--ceeeeec-cccc---hhHHHHHHHHhhcccccccccccccchhhHHHHhhh
Confidence 478899999999999999999876432 2355543 2221 23445555553321 111000 001100
Q ss_pred ---hHHHHHHh--cCCeEEEEEecCCCh
Q 001348 186 ---PHYIRERL--QCMKVFIVLDDVNKF 208 (1094)
Q Consensus 186 ---~~~l~~~L--~~kr~LlVLDdv~~~ 208 (1094)
.-.+.+++ ++|.+|+|+||+...
T Consensus 90 ~~~a~t~AEyfrd~G~dVlli~Dsltr~ 117 (215)
T PF00006_consen 90 PYTALTIAEYFRDQGKDVLLIIDSLTRW 117 (215)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEETHHHH
T ss_pred hccchhhhHHHhhcCCceeehhhhhHHH
Confidence 01122222 689999999999443
No 421
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.19 E-value=0.09 Score=52.97 Aligned_cols=28 Identities=29% Similarity=0.404 Sum_probs=25.0
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHhc
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQISR 141 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 141 (1094)
..++++|+|..|.|||||++.+...+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4679999999999999999999987654
No 422
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=93.16 E-value=0.22 Score=59.56 Aligned_cols=58 Identities=24% Similarity=0.305 Sum_probs=39.2
Q ss_pred HHHHHHhcCCeEEEEEecCC------ChHhHHHHhcCCCCCCCCceEEEEeCChhhhhhcCcCeEEEccC
Q 001348 187 HYIRERLQCMKVFIVLDDVN------KFRQLEYLAGGLDRFGLGSRIIVTSRDKQVLEKYGVDHIYEVEE 250 (1094)
Q Consensus 187 ~~l~~~L~~kr~LlVLDdv~------~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~~~~l~~ 250 (1094)
-.+.+.|-.+.=+|+||.=. ...-++.++.. .+| .+||+|-|+..+..+ ++++++++.
T Consensus 162 v~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~----~~g-tviiVSHDR~FLd~V-~t~I~~ld~ 225 (530)
T COG0488 162 VALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKR----YPG-TVIVVSHDRYFLDNV-ATHILELDR 225 (530)
T ss_pred HHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----CCC-cEEEEeCCHHHHHHH-hhheEEecC
Confidence 34666677788899999652 22334444443 345 799999999998887 566776653
No 423
>PRK05439 pantothenate kinase; Provisional
Probab=93.08 E-value=0.11 Score=57.71 Aligned_cols=30 Identities=37% Similarity=0.390 Sum_probs=25.8
Q ss_pred CCCeEEEEEEecCCCchhhHHHHHHHHHhc
Q 001348 112 LPNIQIMGIWGMGGIGKTTIAGVLFNQISR 141 (1094)
Q Consensus 112 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 141 (1094)
...+.+|||.|.+|+||||+|+.+...+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 356789999999999999999999886654
No 424
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.08 E-value=1.2 Score=47.78 Aligned_cols=49 Identities=18% Similarity=0.296 Sum_probs=38.4
Q ss_pred CCeeehhHHHHHHHhcccc----------CCCCeEEEEEEecCCCchhhHHHHHHHHHh
Q 001348 92 EGLIGLDARIERIKSLLCI----------GLPNIQIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 92 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
++.-|.+...+.|.+.+-. .....+-|.++|++|.||+.||++|+-...
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn 191 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN 191 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC
Confidence 4677888888888876532 122368899999999999999999997644
No 425
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.07 E-value=0.058 Score=52.56 Aligned_cols=26 Identities=23% Similarity=0.489 Sum_probs=21.9
Q ss_pred EEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
.|+|+|+.|+|||||++.++......
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCcc
Confidence 37899999999999999999865443
No 426
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=93.05 E-value=0.28 Score=51.04 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=22.5
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHH
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
.-.+++|.|..|.|||||++.++.-.
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998644
No 427
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.05 E-value=0.05 Score=34.28 Aligned_cols=19 Identities=47% Similarity=0.786 Sum_probs=11.2
Q ss_pred cceeeccCcccccccchhh
Q 001348 641 LEDIDLEGTAITELPSSIE 659 (1094)
Q Consensus 641 L~~L~L~~~~i~~lp~~l~ 659 (1094)
|++|+|++|.++.+|++++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 5566666666666665544
No 428
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=93.03 E-value=0.1 Score=54.77 Aligned_cols=22 Identities=23% Similarity=0.067 Sum_probs=20.8
Q ss_pred EEEEEEecCCCchhhHHHHHHH
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFN 137 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~ 137 (1094)
.+++|.|..|.||||+.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 7999999999999999999984
No 429
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=93.02 E-value=0.077 Score=51.61 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=21.7
Q ss_pred EEEEEecCCCchhhHHHHHHHHHh
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
+|.|-|++|.||||+|+.++++..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 689999999999999999998754
No 430
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.02 E-value=0.075 Score=52.82 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=20.4
Q ss_pred EEEEecCCCchhhHHHHHHHHH
Q 001348 118 MGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 118 v~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
|.|+|++|.||||+|+.++..+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999876
No 431
>PRK13948 shikimate kinase; Provisional
Probab=93.00 E-value=0.075 Score=54.35 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=23.9
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHh
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
..+.|.++||.|.||||+++.+.+++.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 457899999999999999999998764
No 432
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=93.00 E-value=0.25 Score=57.27 Aligned_cols=91 Identities=21% Similarity=0.296 Sum_probs=52.2
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHHHHHhh-hccCCc---ccCCC------
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDRLLSQI-LDESIR---IETPY------ 184 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l-~~~~~~---~~~~~------ 184 (1094)
-..++|.|.+|+|||||+..+......+...++.+.-+++.. ..+.++.+++...- .....- ..+..
T Consensus 143 GQr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~alIGER~---rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 219 (461)
T TIGR01039 143 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERT---REGNDLYHEMKESGVIDKTALVYGQMNEPPGARMR 219 (461)
T ss_pred CCEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEEecCCc---hHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 357899999999999999999987654434444444444432 23445555543321 111000 00110
Q ss_pred ---chHHHHHHh---cCCeEEEEEecCCCh
Q 001348 185 ---IPHYIRERL---QCMKVFIVLDDVNKF 208 (1094)
Q Consensus 185 ---~~~~l~~~L---~~kr~LlVLDdv~~~ 208 (1094)
..-.+.+++ +++++|||+||+...
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 220 VALTGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 122344555 468999999999554
No 433
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=92.97 E-value=0.2 Score=62.03 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.7
Q ss_pred eEEEEEEecCCCchhhHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFN 137 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~ 137 (1094)
-..|+|+|..|.|||||||.+..
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999865
No 434
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=92.94 E-value=0.072 Score=54.96 Aligned_cols=21 Identities=24% Similarity=0.007 Sum_probs=19.0
Q ss_pred EEEEEecCCCchhhHHHHHHH
Q 001348 117 IMGIWGMGGIGKTTIAGVLFN 137 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~ 137 (1094)
++.|.|..|.||||+++.+..
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 477999999999999999984
No 435
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.94 E-value=0.0012 Score=77.73 Aligned_cols=36 Identities=28% Similarity=0.274 Sum_probs=18.3
Q ss_pred CCcEEecCCCCCCC----CCCccccCCCcccEEecCCccC
Q 001348 663 GLTTLNLTGCSKLD----NLPENLGNLKSLKMLCANESAI 698 (1094)
Q Consensus 663 ~L~~L~L~~~~~~~----~lp~~l~~l~~L~~L~l~~~~i 698 (1094)
.|++|++..|.... .+...+.....|+.+++..|.+
T Consensus 145 ~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 145 LLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGL 184 (478)
T ss_pred HHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhccc
Confidence 44555555555442 2333444455566666666654
No 436
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=92.88 E-value=0.36 Score=53.16 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=22.1
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
-.+++|+|..|.|||||++.++.-.
T Consensus 30 Ge~~~IvG~nGsGKSTLl~~L~gl~ 54 (275)
T cd03289 30 GQRVGLLGRTGSGKSTLLSAFLRLL 54 (275)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhc
Confidence 3589999999999999999998754
No 437
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=92.86 E-value=0.075 Score=52.32 Aligned_cols=23 Identities=39% Similarity=0.611 Sum_probs=21.1
Q ss_pred EEEEEecCCCchhhHHHHHHHHH
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
+|.|.|++|.||||+|+.+..+.
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999865
No 438
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=92.86 E-value=0.52 Score=53.01 Aligned_cols=97 Identities=22% Similarity=0.241 Sum_probs=57.1
Q ss_pred HHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHHHHHhhhccCCcc
Q 001348 101 IERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDRLLSQILDESIRI 180 (1094)
Q Consensus 101 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~ 180 (1094)
+.++.+.|..+--.-.+|.|-|-+|||||||.-+++.++..+- .+.|++ .|.| ..++.-. +..+.......
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVs--GEES-----~~QiklR-A~RL~~~~~~l 149 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVS--GEES-----LQQIKLR-ADRLGLPTNNL 149 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEe--CCcC-----HHHHHHH-HHHhCCCccce
Confidence 4566666643333447899999999999999999999988776 666764 2322 2222211 22232111111
Q ss_pred --cCCCchHHHHHHhc-CCeEEEEEecCC
Q 001348 181 --ETPYIPHYIRERLQ-CMKVFIVLDDVN 206 (1094)
Q Consensus 181 --~~~~~~~~l~~~L~-~kr~LlVLDdv~ 206 (1094)
-.+...+.|.+.+. .+.-|+|+|-+.
T Consensus 150 ~l~aEt~~e~I~~~l~~~~p~lvVIDSIQ 178 (456)
T COG1066 150 YLLAETNLEDIIAELEQEKPDLVVIDSIQ 178 (456)
T ss_pred EEehhcCHHHHHHHHHhcCCCEEEEeccc
Confidence 11112444444443 467799999873
No 439
>PHA02244 ATPase-like protein
Probab=92.85 E-value=0.22 Score=56.06 Aligned_cols=47 Identities=19% Similarity=0.201 Sum_probs=31.4
Q ss_pred CCeeehhHHH----HHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 92 EGLIGLDARI----ERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 92 ~~~vGr~~~~----~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
..++|....+ ..+..++.. + .-|.|+|++|+|||+||++++......
T Consensus 96 ~~~ig~sp~~~~~~~ri~r~l~~---~-~PVLL~GppGtGKTtLA~aLA~~lg~p 146 (383)
T PHA02244 96 TTKIASNPTFHYETADIAKIVNA---N-IPVFLKGGAGSGKNHIAEQIAEALDLD 146 (383)
T ss_pred CcccCCCHHHHHHHHHHHHHHhc---C-CCEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3466755444 344444432 2 246789999999999999999875433
No 440
>PRK15115 response regulator GlrR; Provisional
Probab=92.83 E-value=1.4 Score=52.38 Aligned_cols=48 Identities=19% Similarity=0.174 Sum_probs=34.3
Q ss_pred CCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHH
Q 001348 92 EGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 92 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
..++|....+.++.+....-...-..|.|.|.+|.|||++|+.+.+.-
T Consensus 134 ~~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s 181 (444)
T PRK15115 134 EAIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNAS 181 (444)
T ss_pred hcccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhc
Confidence 458888877766655443222233457799999999999999998743
No 441
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=92.81 E-value=0.31 Score=50.20 Aligned_cols=113 Identities=19% Similarity=0.141 Sum_probs=60.0
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhcc---cc-ceEEeeec-hhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRK---FE-SKCFMANV-REESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYI 189 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~---F~-~~~~~~~~-~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l 189 (1094)
..-..|.|++|+|||||.+.++.-++.. |. ..+-+.+- .+...-..+..+.....--++.....+. .....++
T Consensus 137 ~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~--~gmmmaI 214 (308)
T COG3854 137 WLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKA--EGMMMAI 214 (308)
T ss_pred ceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHH--HHHHHHH
Confidence 4446789999999999999999865443 43 23333222 2222111222233322222222211110 0012333
Q ss_pred HHHhcCCeEEEEEecCCChHhHHHHhcCCCCCCCCceEEEEeCChh
Q 001348 190 RERLQCMKVFIVLDDVNKFRQLEYLAGGLDRFGLGSRIIVTSRDKQ 235 (1094)
Q Consensus 190 ~~~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~ 235 (1094)
+.. -.=.+|.|.+-..++..++.... ..|-+++.|..--.
T Consensus 215 rsm---~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG~~ 254 (308)
T COG3854 215 RSM---SPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHGNG 254 (308)
T ss_pred Hhc---CCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeecccc
Confidence 333 56789999998777666655442 45778777765433
No 442
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=92.80 E-value=0.084 Score=52.65 Aligned_cols=28 Identities=29% Similarity=0.412 Sum_probs=23.6
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHhccc
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQISRKF 143 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F 143 (1094)
+-|.++||.|.||||+.+++++.+.-.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 3578999999999999999998765554
No 443
>PRK13975 thymidylate kinase; Provisional
Probab=92.76 E-value=0.093 Score=54.67 Aligned_cols=26 Identities=31% Similarity=0.458 Sum_probs=23.6
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHhc
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQISR 141 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 141 (1094)
.+|+|.|+.|+||||+|+.++.++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 58999999999999999999998764
No 444
>PRK13946 shikimate kinase; Provisional
Probab=92.76 E-value=0.078 Score=54.64 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=22.7
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
.+.|++.|++|.||||+|+.+++++
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999876
No 445
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=92.74 E-value=0.075 Score=52.66 Aligned_cols=22 Identities=32% Similarity=0.595 Sum_probs=19.9
Q ss_pred EEEEEecCCCchhhHHHHHHHH
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQ 138 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~ 138 (1094)
+|.|.|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999999876
No 446
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=92.74 E-value=0.42 Score=49.20 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=24.1
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHh
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
...+|+|.|.+|.||||+|+.+...+.
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999998764
No 447
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=92.74 E-value=0.085 Score=53.65 Aligned_cols=26 Identities=31% Similarity=0.324 Sum_probs=22.5
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHh
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
.+.|+|+|+.|.||||+|+.+.....
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 34689999999999999999998653
No 448
>PRK14531 adenylate kinase; Provisional
Probab=92.72 E-value=0.25 Score=50.86 Aligned_cols=24 Identities=33% Similarity=0.253 Sum_probs=21.3
Q ss_pred EEEEEEecCCCchhhHHHHHHHHH
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
+.|.|.|++|.||||+|+.++.++
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998865
No 449
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.70 E-value=0.13 Score=51.93 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=20.9
Q ss_pred EEEEecCCCchhhHHHHHHHHHhc
Q 001348 118 MGIWGMGGIGKTTIAGVLFNQISR 141 (1094)
Q Consensus 118 v~I~G~gGiGKTtLA~~v~~~~~~ 141 (1094)
|.|.|.+|+|||||++.+++.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 679999999999999999998754
No 450
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=92.69 E-value=0.64 Score=46.78 Aligned_cols=27 Identities=26% Similarity=0.091 Sum_probs=22.7
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
.+|-|++-.|-||||.|..++-+...+
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~ 32 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGH 32 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHC
Confidence 578888889999999999999875544
No 451
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=92.67 E-value=1.1 Score=50.41 Aligned_cols=53 Identities=21% Similarity=0.123 Sum_probs=33.9
Q ss_pred eEEEccCCCHHHHHHHHHhhcccC----CCCCchHHHHHHHHHHHhCCCchHHHHHhhhh
Q 001348 244 HIYEVEELNNIEALELFCKYAFRQ----NHHPQDLMVISGRVVDYARGNPLAIKVLASFF 299 (1094)
Q Consensus 244 ~~~~l~~L~~~ea~~Lf~~~af~~----~~~~~~~~~~~~~i~~~~~GlPLal~~lg~~L 299 (1094)
.+++|+..+.+|+.++...+.-.. ..+. ++.-+++.-..+|+|--++.++.++
T Consensus 404 ~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~---Ee~~kql~fLSngNP~l~~~lca~~ 460 (461)
T KOG3928|consen 404 VPIEVENYTLDEFEALIDYYLQSNWLLKKVPG---EENIKQLYFLSNGNPSLMERLCAFL 460 (461)
T ss_pred CccccCCCCHHHHHHHHHHHHHhhHHHhhcCc---ccchhhhhhhcCCCHHHHHHHHHhc
Confidence 468899999999988877665221 1122 2334566677789996566555544
No 452
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=92.65 E-value=0.12 Score=59.14 Aligned_cols=51 Identities=24% Similarity=0.181 Sum_probs=37.5
Q ss_pred CCeeehhHHHHHHHhcccc---------C---CCCeEEEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 92 EGLIGLDARIERIKSLLCI---------G---LPNIQIMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 92 ~~~vGr~~~~~~l~~~L~~---------~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
.+++|.+..++.+...+.. + ....+.|.++|++|+||||||++++..+...
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~ 77 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCCh
Confidence 3578888888777766632 0 0114678999999999999999999876443
No 453
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=92.64 E-value=0.67 Score=57.98 Aligned_cols=104 Identities=15% Similarity=0.201 Sum_probs=65.5
Q ss_pred CeeehhHHHHHHHhccccC---C---CCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHH
Q 001348 93 GLIGLDARIERIKSLLCIG---L---PNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLR 166 (1094)
Q Consensus 93 ~~vGr~~~~~~l~~~L~~~---~---~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~ 166 (1094)
..+|.++.+..|.+.+... . ...-...+.|+.|+|||-||++++.-+-+..+.-+-++ +...+
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD-----------mse~~ 631 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD-----------MSEFQ 631 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEec-----------hhhhh
Confidence 4678888888887776531 1 13456778999999999999999998765555444332 22222
Q ss_pred HHHHHhhhccCCcccCCCchHHHHHHhcCCeE-EEEEecCCChH
Q 001348 167 DRLLSQILDESIRIETPYIPHYIRERLQCMKV-FIVLDDVNKFR 209 (1094)
Q Consensus 167 ~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~-LlVLDdv~~~~ 209 (1094)
. .+++.+.....-.......+.+.++.+.+ +|.||||+..+
T Consensus 632 e--vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh 673 (898)
T KOG1051|consen 632 E--VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAH 673 (898)
T ss_pred h--hhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhcC
Confidence 2 34444333322222225577777877765 66789996653
No 454
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=92.59 E-value=0.087 Score=55.00 Aligned_cols=23 Identities=39% Similarity=0.567 Sum_probs=21.1
Q ss_pred eEEEEEEecCCCchhhHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFN 137 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~ 137 (1094)
-.++||+|..|.||||||+.++-
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhc
Confidence 35899999999999999999986
No 455
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.58 E-value=0.47 Score=57.10 Aligned_cols=53 Identities=23% Similarity=0.284 Sum_probs=39.7
Q ss_pred CCCC-CCeeehhHHHHHHHhcccc----------CCCCeEEEEEEecCCCchhhHHHHHHHHHh
Q 001348 88 SSDF-EGLIGLDARIERIKSLLCI----------GLPNIQIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 88 ~~~~-~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
|.+. +++=|.++-..+|.+-+.. +-.+..-|.+||++|.|||-||++|+-+.+
T Consensus 667 PnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs 730 (953)
T KOG0736|consen 667 PNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS 730 (953)
T ss_pred CccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce
Confidence 4444 5677888888888876654 112345688999999999999999997644
No 456
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=92.58 E-value=0.091 Score=54.10 Aligned_cols=32 Identities=28% Similarity=0.389 Sum_probs=27.9
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhccccce
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRKFESK 146 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~ 146 (1094)
.|+|.|+|+.|+|||||++++..+...+|...
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~ 33 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRV 33 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccc
Confidence 46899999999999999999999888888533
No 457
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.58 E-value=0.17 Score=53.54 Aligned_cols=116 Identities=11% Similarity=0.033 Sum_probs=59.4
Q ss_pred CeEEEEEEecCCCchhhHHHHHHH-HHhccccceEEeeechhhhccCCChHHHHHHHHHhhhccCCcccCC---Cc-hHH
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFN-QISRKFESKCFMANVREESEKGGGLVHLRDRLLSQILDESIRIETP---YI-PHY 188 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~-~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~---~~-~~~ 188 (1094)
..++++|.|+.|.||||+.+.+.. .+..+- .+++.... .. .....+++..+...+...... .. ...
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~~~~la~~--G~~v~a~~-~~------~~~~~~i~~~~~~~d~~~~~~StF~~e~~~ 100 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVALITIMAQI--GSFVPASS-AT------LSIFDSVLTRMGASDSIQHGMSTFMVELSE 100 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHhC--CCEEEcCc-eE------EeccceEEEEecCccccccccchHHHHHHH
Confidence 356889999999999999999987 433221 22222110 00 011112222222111111111 11 333
Q ss_pred HHHHhc--CCeEEEEEecCC---C-hH--h-HHHHhcCCCCCCCCceEEEEeCChhhhhh
Q 001348 189 IRERLQ--CMKVFIVLDDVN---K-FR--Q-LEYLAGGLDRFGLGSRIIVTSRDKQVLEK 239 (1094)
Q Consensus 189 l~~~L~--~kr~LlVLDdv~---~-~~--~-~~~l~~~~~~~~~gsrIiiTTR~~~v~~~ 239 (1094)
+++.++ .++-|++||... + .+ . ...+...+.. ..++.+|++|.+.++...
T Consensus 101 ~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~-~~~~~~i~~TH~~~l~~~ 159 (222)
T cd03287 101 TSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLE-EKKCLVLFVTHYPSLGEI 159 (222)
T ss_pred HHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHh-ccCCeEEEEcccHHHHHH
Confidence 444443 478999999962 1 11 1 1222222221 247899999999987653
No 458
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.54 E-value=0.28 Score=54.57 Aligned_cols=89 Identities=21% Similarity=0.277 Sum_probs=55.6
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHhccc--cceEEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHh
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQISRKF--ESKCFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERL 193 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 193 (1094)
+.|.|.|..|.||||+++++.+.+.... +..+-+.+..|..-...... ++.. . .......+.++..|
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v--------~~~~-~--~~~~~~~~~l~~aL 201 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVV--------QLRT-S--DDAISMTRLLKATL 201 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEE--------EEEe-c--CCCCCHHHHHHHHh
Confidence 4678999999999999999998876532 23444444333211100000 0000 0 01112367888889
Q ss_pred cCCeEEEEEecCCChHhHHHHh
Q 001348 194 QCMKVFIVLDDVNKFRQLEYLA 215 (1094)
Q Consensus 194 ~~kr~LlVLDdv~~~~~~~~l~ 215 (1094)
+...=.||+..+.+.+.++.+.
T Consensus 202 R~~pD~iivGEiR~~ea~~~l~ 223 (299)
T TIGR02782 202 RLRPDRIIVGEVRGGEALDLLK 223 (299)
T ss_pred cCCCCEEEEeccCCHHHHHHHH
Confidence 9888889999999888776543
No 459
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=92.54 E-value=0.53 Score=60.30 Aligned_cols=197 Identities=17% Similarity=0.207 Sum_probs=95.7
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhcc-c---cceEEeeec--hhhhccCCChHHHHHHHHHhhhccCCcccCCCchHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRK-F---ESKCFMANV--REESEKGGGLVHLRDRLLSQILDESIRIETPYIPHY 188 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F---~~~~~~~~~--~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~ 188 (1094)
..-+.|+|.+|.||||+.+.++-....+ + +..+|+..- .......... .+..-+...+........ ....
T Consensus 222 ~~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~-~~~~~l~~~~~~~~~~~~---~~~~ 297 (824)
T COG5635 222 YAKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQL-SLIDYLAEELFSQGIAKQ---LIEA 297 (824)
T ss_pred hhheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhc-cHHHHHHHHHhccCCcch---hhHH
Confidence 3478899999999999999998754332 2 222333221 1111110111 222222222222111100 1222
Q ss_pred HHHHhcCCeEEEEEecCCChHh------HHHHhcCCCCCCCCceEEEEeCChhhhhhcCcCeEEEccCCCHHHHHHH---
Q 001348 189 IRERLQCMKVFIVLDDVNKFRQ------LEYLAGGLDRFGLGSRIIVTSRDKQVLEKYGVDHIYEVEELNNIEALEL--- 259 (1094)
Q Consensus 189 l~~~L~~kr~LlVLDdv~~~~~------~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~~~~l~~L~~~ea~~L--- 259 (1094)
..+.++..++++++|.++.... ...+-...+ .-+.+.+|+|+|....-.....-..+++..+.++.-.+.
T Consensus 298 ~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~-~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~~ 376 (824)
T COG5635 298 HQELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQ-EYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFILY 376 (824)
T ss_pred HHHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhh-hccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHHH
Confidence 2477888999999999876532 222111122 235789999999775543332233445555544433322
Q ss_pred -----HHhhcccCCCCC--chHHHH---HHHHHHHhCCCchHHHHHhhhhc------CCCHHHHHHHHHHhhc
Q 001348 260 -----FCKYAFRQNHHP--QDLMVI---SGRVVDYARGNPLAIKVLASFFH------RKSKLDWEIALQNLKQ 316 (1094)
Q Consensus 260 -----f~~~af~~~~~~--~~~~~~---~~~i~~~~~GlPLal~~lg~~L~------~~~~~~w~~~l~~l~~ 316 (1094)
+....++..... .....+ ..+-++.....|+++.+.+..-. ....+-++.+++.+-.
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~~ 449 (824)
T COG5635 377 QWLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALLG 449 (824)
T ss_pred HHHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHHh
Confidence 222222211111 011111 12334444778999888774322 2345556666665443
No 460
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=92.52 E-value=0.08 Score=53.49 Aligned_cols=45 Identities=24% Similarity=0.282 Sum_probs=31.7
Q ss_pred eeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHH
Q 001348 94 LIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQ 138 (1094)
Q Consensus 94 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 138 (1094)
+||....+.++.+.+..-.....-|.|+|..|.||+.+|+.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 467777787777766542222245669999999999999999983
No 461
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.50 E-value=0.35 Score=46.20 Aligned_cols=13 Identities=8% Similarity=0.148 Sum_probs=4.6
Q ss_pred hhcCCcccEEecc
Q 001348 611 ICKLKSLLKLCLD 623 (1094)
Q Consensus 611 i~~l~~L~~L~L~ 623 (1094)
|.++.+|+.+.+.
T Consensus 8 F~~~~~l~~i~~~ 20 (129)
T PF13306_consen 8 FYNCSNLESITFP 20 (129)
T ss_dssp TTT-TT--EEEET
T ss_pred HhCCCCCCEEEEC
Confidence 3344445555544
No 462
>PLN02318 phosphoribulokinase/uridine kinase
Probab=92.49 E-value=0.11 Score=61.58 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=25.3
Q ss_pred CCCCeEEEEEEecCCCchhhHHHHHHHHH
Q 001348 111 GLPNIQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 111 ~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
..+++.+|+|.|..|.||||||+.+...+
T Consensus 61 ~~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 61 KNDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred cCCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 44568899999999999999999998764
No 463
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=92.47 E-value=0.081 Score=54.24 Aligned_cols=24 Identities=29% Similarity=0.499 Sum_probs=21.6
Q ss_pred EEEEEEecCCCchhhHHHHHHHHH
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
++|+|+|+.|.||||||+.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999999853
No 464
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=92.47 E-value=0.14 Score=55.78 Aligned_cols=38 Identities=16% Similarity=0.291 Sum_probs=29.9
Q ss_pred CCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEee
Q 001348 113 PNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMA 150 (1094)
Q Consensus 113 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 150 (1094)
..-.++.|.|.+|.||||+|.+++.....+=+.++|++
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 34679999999999999999998775444445667775
No 465
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.46 E-value=0.96 Score=52.45 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=22.4
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHH
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQ 138 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~ 138 (1094)
...+|+++|+.|+||||++..++.+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999998875
No 466
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=92.45 E-value=0.24 Score=53.90 Aligned_cols=48 Identities=29% Similarity=0.362 Sum_probs=37.0
Q ss_pred HHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeee
Q 001348 104 IKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMAN 151 (1094)
Q Consensus 104 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~ 151 (1094)
|.++|..+-..-+++=|+|+.|.||||+|.+++-.....-...+|++.
T Consensus 49 LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDt 96 (279)
T COG0468 49 LDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDT 96 (279)
T ss_pred HHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeC
Confidence 333444344567899999999999999999998877666667888864
No 467
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=92.42 E-value=0.2 Score=54.84 Aligned_cols=57 Identities=23% Similarity=0.193 Sum_probs=43.9
Q ss_pred CCCCCeeehhHHHHH---HHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccc
Q 001348 89 SDFEGLIGLDARIER---IKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFES 145 (1094)
Q Consensus 89 ~~~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~ 145 (1094)
...+.+||.....+. +.+++..+.-.-+.|.|+|++|.|||+||..+.+.+...-++
T Consensus 36 ~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF 95 (450)
T COG1224 36 FIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPF 95 (450)
T ss_pred EcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCc
Confidence 456789998876654 455555554456899999999999999999999988765443
No 468
>PRK14530 adenylate kinase; Provisional
Probab=92.40 E-value=0.099 Score=55.39 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=21.1
Q ss_pred EEEEEecCCCchhhHHHHHHHHH
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
.|.|.|++|.||||+|+.++.++
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999999998765
No 469
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=92.40 E-value=0.17 Score=56.42 Aligned_cols=59 Identities=20% Similarity=0.204 Sum_probs=40.6
Q ss_pred CCCCCeeehhHHHHHH---HhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceE
Q 001348 89 SDFEGLIGLDARIERI---KSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKC 147 (1094)
Q Consensus 89 ~~~~~~vGr~~~~~~l---~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~ 147 (1094)
....++||.....+.. .+++..+.-.-|.|.|.|++|.|||+||.++++.+....+.+.
T Consensus 21 ~~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~ 82 (398)
T PF06068_consen 21 YIADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVS 82 (398)
T ss_dssp SEETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEE
T ss_pred eccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeE
Confidence 3457899998876654 4444433324589999999999999999999999987766544
No 470
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.39 E-value=0.25 Score=51.63 Aligned_cols=116 Identities=14% Similarity=0.082 Sum_probs=58.5
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHH-HhccccceEEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCC----chHH
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQ-ISRKFESKCFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPY----IPHY 188 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~----~~~~ 188 (1094)
..++++|.|+.|.||||+.+.++.- +..+ ..+|+.... .. ..+.+.+...+...+....... ....
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~~~~la~--~G~~vpa~~------~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~ 98 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALLAIMAQ--IGCFVPAEY------AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSE 98 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHH--cCCCcchhh------cC-ccChhheeEecCCccccchhhhHHHHHHHH
Confidence 3478999999999999999998752 2221 223332110 00 0122222222221111000000 0112
Q ss_pred HHHHh--cCCeEEEEEecCC---ChHh----HHHHhcCCCCCCCCceEEEEeCChhhhhhc
Q 001348 189 IRERL--QCMKVFIVLDDVN---KFRQ----LEYLAGGLDRFGLGSRIIVTSRDKQVLEKY 240 (1094)
Q Consensus 189 l~~~L--~~kr~LlVLDdv~---~~~~----~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~ 240 (1094)
+...+ ..++-|+++|... +..+ ...+...+. ..|+.+|++|-+.+++...
T Consensus 99 ~~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~--~~~~~~i~~TH~~~l~~~~ 157 (204)
T cd03282 99 TAYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLI--KKESTVFFATHFRDIAAIL 157 (204)
T ss_pred HHHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHh
Confidence 22222 3567899999972 2222 122222222 2378999999999887654
No 471
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=92.37 E-value=0.17 Score=58.16 Aligned_cols=124 Identities=18% Similarity=0.221 Sum_probs=64.4
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhccccc-----eEEeeechhhhcc---------------CC-ChHHHHHHHHHhh
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRKFES-----KCFMANVREESEK---------------GG-GLVHLRDRLLSQI 173 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~-----~~~~~~~~~~~~~---------------~~-~~~~l~~~ll~~l 173 (1094)
-|.-|++|..|+|||||.|++.+.--..|.. .+++......... .. .+.++...+|..+
T Consensus 106 GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~gl 185 (582)
T KOG0062|consen 106 GRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYDKILAGL 185 (582)
T ss_pred ccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhC
Confidence 3677999999999999999999932223332 2222211111000 00 2223333333333
Q ss_pred hccC----CcccCC----CchHHHHHHhcCCeEEEEEecCCCh---HhHHHHhcCCCCCCCCceEEEEeCChhhhhhc
Q 001348 174 LDES----IRIETP----YIPHYIRERLQCMKVFIVLDDVNKF---RQLEYLAGGLDRFGLGSRIIVTSRDKQVLEKY 240 (1094)
Q Consensus 174 ~~~~----~~~~~~----~~~~~l~~~L~~kr~LlVLDdv~~~---~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~ 240 (1094)
.-.. .+..+. ...-.+.+.+-.+.=||.||.=.+. ..+.+|...+.. -+..+||.|.|+..+..+
T Consensus 186 GFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t--~~~T~liVSHDr~FLn~V 261 (582)
T KOG0062|consen 186 GFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQT--WKITSLIVSHDRNFLNTV 261 (582)
T ss_pred CCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhh--CCceEEEEeccHHHHHHH
Confidence 2110 111111 1134456666678889999965332 223333333332 126789999999877654
No 472
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.34 E-value=0.25 Score=47.26 Aligned_cols=61 Identities=16% Similarity=0.124 Sum_probs=25.2
Q ss_pred ccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccC
Q 001348 586 SIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEG 648 (1094)
Q Consensus 586 ~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~ 648 (1094)
.+.++.+|+.+.+.. .+...-...|.++.+|+.+.+.++ ....-...+.++++|+.+.+..
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc
Confidence 345566777777664 233333344555666666666552 2222223344554555555543
No 473
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=92.32 E-value=0.12 Score=53.73 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=22.6
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
..+|.|.|++|+||||+|+.++.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999864
No 474
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=92.27 E-value=0.35 Score=59.82 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=21.2
Q ss_pred eEEEEEEecCCCchhhHHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQ 138 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~ 138 (1094)
-..|+|+|..|.|||||++.+...
T Consensus 361 G~~v~IvG~sGsGKSTLl~lL~gl 384 (588)
T PRK13657 361 GQTVAIVGPTGAGKSTLINLLQRV 384 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999998763
No 475
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=92.24 E-value=0.24 Score=55.52 Aligned_cols=41 Identities=24% Similarity=0.299 Sum_probs=31.0
Q ss_pred HHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 102 ERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 102 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
.++.+.+........+|+|.|.+|+|||||+..+...++..
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 34444443334567899999999999999999998877654
No 476
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=92.22 E-value=0.14 Score=56.41 Aligned_cols=28 Identities=32% Similarity=0.326 Sum_probs=24.2
Q ss_pred CCeEEEEEEecCCCchhhHHHHHHHHHh
Q 001348 113 PNIQIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 113 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
..+.+|||.|..|+||||+|+.+...+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4578999999999999999998876554
No 477
>PRK14738 gmk guanylate kinase; Provisional
Probab=92.18 E-value=0.13 Score=54.02 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=23.9
Q ss_pred CCCCeEEEEEEecCCCchhhHHHHHHHH
Q 001348 111 GLPNIQIMGIWGMGGIGKTTIAGVLFNQ 138 (1094)
Q Consensus 111 ~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 138 (1094)
+....++|.|.|++|+|||||++.+...
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3456789999999999999999999754
No 478
>PRK15453 phosphoribulokinase; Provisional
Probab=92.16 E-value=0.19 Score=54.39 Aligned_cols=29 Identities=24% Similarity=0.377 Sum_probs=24.9
Q ss_pred CCeEEEEEEecCCCchhhHHHHHHHHHhc
Q 001348 113 PNIQIMGIWGMGGIGKTTIAGVLFNQISR 141 (1094)
Q Consensus 113 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 141 (1094)
....+|+|.|.+|.||||+|+++.+.++.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~ 31 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRR 31 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 35679999999999999999999976643
No 479
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=92.16 E-value=0.22 Score=56.80 Aligned_cols=95 Identities=14% Similarity=0.096 Sum_probs=55.5
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhccccc---eEEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRKFES---KCFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRE 191 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~---~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~ 191 (1094)
-..|.|+|+.|.||||+++++...+....+. ++.+.+..+. ....+... ...+...............++.
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~-----~~~~~~~~-~~~v~Q~~v~~~~~~~~~~l~~ 207 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEF-----VYDEIETI-SASVCQSEIPRHLNNFAAGVRN 207 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceE-----eccccccc-cceeeeeeccccccCHHHHHHH
Confidence 4699999999999999999999877544332 2333222221 11111100 0000001111111122677888
Q ss_pred HhcCCeEEEEEecCCChHhHHHHh
Q 001348 192 RLQCMKVFIVLDDVNKFRQLEYLA 215 (1094)
Q Consensus 192 ~L~~kr~LlVLDdv~~~~~~~~l~ 215 (1094)
.|+...-.+++..+.+.+..+...
T Consensus 208 aLR~~Pd~i~vGEiRd~et~~~al 231 (358)
T TIGR02524 208 ALRRKPHAILVGEARDAETISAAL 231 (358)
T ss_pred HhccCCCEEeeeeeCCHHHHHHHH
Confidence 999999999999999888775443
No 480
>PLN02459 probable adenylate kinase
Probab=92.15 E-value=0.31 Score=52.46 Aligned_cols=94 Identities=27% Similarity=0.291 Sum_probs=48.6
Q ss_pred EEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhcC-
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQC- 195 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~- 195 (1094)
.|.|.|++|.||||+|+.+..++. |.+..-=..+++.......+.. .+.....+..-.++.-....+++++..
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~--~~~is~gdllR~ei~~~t~lg~----~i~~~~~~G~lVPdeiv~~ll~~~l~~~ 104 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLG--VPHIATGDLVREEIKSSGPLGA----QLKEIVNQGKLVPDEIIFSLLSKRLEAG 104 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcEEeCcHHHHHHHhccchhHH----HHHHHHHcCCccCHHHHHHHHHHHHhcc
Confidence 366789999999999999988652 2211111112221111011111 122222222222222225667777743
Q ss_pred ---CeEEEEEecC-CChHhHHHHhc
Q 001348 196 ---MKVFIVLDDV-NKFRQLEYLAG 216 (1094)
Q Consensus 196 ---kr~LlVLDdv-~~~~~~~~l~~ 216 (1094)
.+--+|||+. .+.+|.+.|..
T Consensus 105 ~~~~~~g~iLDGFPRt~~Qa~~Le~ 129 (261)
T PLN02459 105 EEEGESGFILDGFPRTVRQAEILEG 129 (261)
T ss_pred cccCCceEEEeCCCCCHHHHHHHHh
Confidence 3456999999 55567666643
No 481
>PLN02674 adenylate kinase
Probab=92.13 E-value=0.34 Score=51.90 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=20.9
Q ss_pred EEEEEEecCCCchhhHHHHHHHHH
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
..|.|.|++|.||||+|+.++.++
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~ 55 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEY 55 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Confidence 457799999999999999988754
No 482
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=92.13 E-value=0.15 Score=62.17 Aligned_cols=75 Identities=15% Similarity=0.154 Sum_probs=54.0
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhc-cccceEEeeechhhhccCCChHHHH
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISR-KFESKCFMANVREESEKGGGLVHLR 166 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~~~~~~~~~~l~ 166 (1094)
+...+.++|.+..++.|...+... +.+.++|.+|.||||+|+++.+.+-. .++...|+.+.. .....+.
T Consensus 27 ~~~~~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~np~------~~~~~~~ 96 (637)
T PRK13765 27 ERLIDQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPNPE------DPNNPKI 96 (637)
T ss_pred cccHHHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeCCC------cchHHHH
Confidence 445567999999999888877533 47889999999999999999987543 356777877632 2334555
Q ss_pred HHHHHh
Q 001348 167 DRLLSQ 172 (1094)
Q Consensus 167 ~~ll~~ 172 (1094)
+.+..+
T Consensus 97 ~~v~~~ 102 (637)
T PRK13765 97 RTVPAG 102 (637)
T ss_pred HHHHHh
Confidence 555443
No 483
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=92.13 E-value=0.15 Score=50.75 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=23.5
Q ss_pred EEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
+++|+|+.|+|||||+.++...++.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 58899999999999999999987765
No 484
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.08 E-value=0.21 Score=54.65 Aligned_cols=41 Identities=29% Similarity=0.355 Sum_probs=35.4
Q ss_pred CCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeee
Q 001348 111 GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMAN 151 (1094)
Q Consensus 111 ~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~ 151 (1094)
+-+.-+++.|+|.+|.|||++|.++..+.....+.++|+..
T Consensus 19 G~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~ 59 (260)
T COG0467 19 GLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVST 59 (260)
T ss_pred CCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 34567899999999999999999999988888888888863
No 485
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=92.08 E-value=0.24 Score=53.39 Aligned_cols=48 Identities=19% Similarity=0.261 Sum_probs=35.3
Q ss_pred HHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEee
Q 001348 103 RIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMA 150 (1094)
Q Consensus 103 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 150 (1094)
.|-++|..+-..-.++.|.|.+|.|||++|.++......+-+.++|+.
T Consensus 9 ~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 9 GMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred hHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 444555444456689999999999999999997765434456677776
No 486
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=92.06 E-value=0.4 Score=56.15 Aligned_cols=53 Identities=25% Similarity=0.313 Sum_probs=33.9
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhccc-cceEEeeechhhhccCCChHHHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRKF-ESKCFMANVREESEKGGGLVHLRDRLLS 171 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 171 (1094)
-..++|.|-+|+|||||+..+...+.+.. +.++|. -+++.. ..+.++...++.
T Consensus 161 GQR~gIfgg~GvGKs~L~~~~~~~~~~~~~dv~V~~-lIGERg---rEv~efi~~~~~ 214 (494)
T CHL00060 161 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFG-GVGERT---REGNDLYMEMKE 214 (494)
T ss_pred CCEEeeecCCCCChhHHHHHHHHHHHHhcCCeEEEE-EeccCc---hHHHHHHHHHHh
Confidence 35789999999999999999887644322 444444 444432 224455554444
No 487
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=92.05 E-value=0.3 Score=61.62 Aligned_cols=185 Identities=17% Similarity=0.089 Sum_probs=89.4
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHH-HhccccceEEeeechhhhccCCChHHHHHHHHHhhhccCCcccCC---Cc-hHH
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQ-ISRKFESKCFMANVREESEKGGGLVHLRDRLLSQILDESIRIETP---YI-PHY 188 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~---~~-~~~ 188 (1094)
+.+++.|.|+.+.||||+.+.+.-- +-. ...+|+..... + ...+..+++..+.......... .. ...
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~ma--q~G~~vpa~~~-~-----~i~~~~~i~~~ig~~~si~~~lStfS~~m~~ 397 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALMA--KSGLPIPANEP-S-----EIPVFKEIFADIGDEQSIEQSLSTFSGHMTN 397 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHHH--HhCCCcccCCC-c-----cccccceEEEecCCccchhhchhHHHHHHHH
Confidence 4678999999999999999998752 111 12223322100 0 0001111111111110000000 00 122
Q ss_pred HHHHhc--CCeEEEEEecCCC---hHhHHH----HhcCCCCCCCCceEEEEeCChhhhhhcCcC---eEEEccCCCHHHH
Q 001348 189 IRERLQ--CMKVFIVLDDVNK---FRQLEY----LAGGLDRFGLGSRIIVTSRDKQVLEKYGVD---HIYEVEELNNIEA 256 (1094)
Q Consensus 189 l~~~L~--~kr~LlVLDdv~~---~~~~~~----l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~---~~~~l~~L~~~ea 256 (1094)
+...++ ..+-|+++|.... ...-.. +...+. ..|+.+|+||.+.++....... ..+.+. ++. +.
T Consensus 398 ~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~-~d~-~~ 473 (782)
T PRK00409 398 IVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVE-FDE-ET 473 (782)
T ss_pred HHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEE-Eec-Cc
Confidence 222222 3778999999832 222222 222221 3478999999998776543111 111221 111 11
Q ss_pred HHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHHHHHhhhhcCCCHHHHHHHHHHhhc
Q 001348 257 LELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAIKVLASFFHRKSKLDWEIALQNLKQ 316 (1094)
Q Consensus 257 ~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg~~L~~~~~~~w~~~l~~l~~ 316 (1094)
.. + .+-+....+.. ..|-+|++.+ |+|-.+..-|..+.+......+..+.+|..
T Consensus 474 l~-~-~Ykl~~G~~g~---S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l~~ 527 (782)
T PRK00409 474 LR-P-TYRLLIGIPGK---SNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASLEE 527 (782)
T ss_pred Cc-E-EEEEeeCCCCC---cHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 11 1 11111222222 2345666655 899999888888877666677777766543
No 488
>PLN02348 phosphoribulokinase
Probab=92.03 E-value=0.15 Score=57.87 Aligned_cols=31 Identities=19% Similarity=0.224 Sum_probs=26.8
Q ss_pred CCCeEEEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 112 LPNIQIMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 112 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
.+.+.+|||.|.+|.||||+|+.+.+.+...
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~ 76 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTSVFGGA 76 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 3567899999999999999999999977543
No 489
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=92.02 E-value=0.23 Score=55.71 Aligned_cols=26 Identities=23% Similarity=0.496 Sum_probs=23.2
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHH
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
.-..|+|.|+.|.||||+|+.++.++
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 35689999999999999999999865
No 490
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=92.01 E-value=0.3 Score=52.80 Aligned_cols=90 Identities=14% Similarity=0.182 Sum_probs=50.0
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHh----ccccceEEeeechhhhccCCChHHHHHHHHHhhh-ccCCcc---cCC---
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQIS----RKFESKCFMANVREESEKGGGLVHLRDRLLSQIL-DESIRI---ETP--- 183 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~----~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~-~~~~~~---~~~--- 183 (1094)
-..++|.|-.|+|||||+..+.++.. ++-+.++|.. +.+.. ..+.++.+++...=. ....-. .+.
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~-IGeR~---rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~ 144 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAA-MGITM---EDARFFKDDFEETGALERVVLFLNLANDPTI 144 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEE-ecccc---HHHHHHHHHhhhcCCcceEEEEEecCCCCHH
Confidence 35779999999999999999887643 2234455554 43322 234455554443211 110000 011
Q ss_pred ------CchHHHHHHh---cCCeEEEEEecCCCh
Q 001348 184 ------YIPHYIRERL---QCMKVFIVLDDVNKF 208 (1094)
Q Consensus 184 ------~~~~~l~~~L---~~kr~LlVLDdv~~~ 208 (1094)
...-.+.+++ +++++|+++||+...
T Consensus 145 ~r~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 145 ERIITPRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 0112244444 268999999999554
No 491
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=91.98 E-value=0.26 Score=56.73 Aligned_cols=35 Identities=11% Similarity=0.109 Sum_probs=27.8
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHhccccceEE
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCF 148 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~ 148 (1094)
+...+.|.|.||.|||+|.+++.+.++..-..++.
T Consensus 21 ~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~ 55 (364)
T PF05970_consen 21 EGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLV 55 (364)
T ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhccccceEEE
Confidence 44688899999999999999999988775443333
No 492
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=91.98 E-value=0.32 Score=54.29 Aligned_cols=47 Identities=19% Similarity=0.329 Sum_probs=33.2
Q ss_pred eeehhHHHHHHHhccccCC---------------CCeEEEEEEecCCCchhhHHHHHHHHHh
Q 001348 94 LIGLDARIERIKSLLCIGL---------------PNIQIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 94 ~vGr~~~~~~l~~~L~~~~---------------~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
..|...+...|.+.+.... ..--++.|+|.+|.||||+.+.+.....
T Consensus 373 ~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~ 434 (593)
T COG2401 373 IKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQK 434 (593)
T ss_pred cccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhh
Confidence 5566667777766553211 1224789999999999999999987543
No 493
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=91.97 E-value=0.17 Score=55.29 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=29.0
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHhccccceEEee
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMA 150 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 150 (1094)
++|+|+|.+|.|||||+..+...++.+. .++.+.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IK 35 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVK 35 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEE
Confidence 5899999999999999999999988876 455554
No 494
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=91.97 E-value=0.14 Score=51.28 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=22.6
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
-.++.|.|++|+|||||+++++.+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3588999999999999999999865
No 495
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=91.97 E-value=1.4 Score=43.38 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=21.1
Q ss_pred EEEEEEecCCCchhhHHHHHHHH
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQ 138 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~ 138 (1094)
..+.|.|++|.||+||.+++++-
T Consensus 30 e~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 30 EFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred ceEEEeCCCCccHHHHHHHHHhc
Confidence 47899999999999999999984
No 496
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=91.96 E-value=0.13 Score=61.29 Aligned_cols=60 Identities=27% Similarity=0.389 Sum_probs=45.0
Q ss_pred CCCCCCeeehhHHHHHHHhcccc---CCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEe
Q 001348 88 SSDFEGLIGLDARIERIKSLLCI---GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFM 149 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 149 (1094)
|...++++--.+.++++..||.. +....+++.+.|++|+||||.++.+++.+ .|+..-|.
T Consensus 15 P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el--g~~v~Ew~ 77 (519)
T PF03215_consen 15 PKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL--GFEVQEWI 77 (519)
T ss_pred CCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh--CCeeEEec
Confidence 45555666667788889888864 22346799999999999999999999975 34555554
No 497
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=91.95 E-value=0.34 Score=59.93 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=22.1
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
-..++|+|..|.|||||++.+...+
T Consensus 376 G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 376 GQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999987754
No 498
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=91.95 E-value=0.24 Score=60.76 Aligned_cols=57 Identities=21% Similarity=0.300 Sum_probs=44.2
Q ss_pred CCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhcc-ccceEEeeec
Q 001348 92 EGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRK-FESKCFMANV 152 (1094)
Q Consensus 92 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~ 152 (1094)
++++|.++.++.+...+... +.+.++|++|+||||+|+++++.+... |...+++.+.
T Consensus 18 ~~viG~~~a~~~l~~a~~~~----~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~ 75 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQK----RNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNP 75 (608)
T ss_pred hhccCHHHHHHHHHHHHHcC----CCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCC
Confidence 56899999888888877533 366699999999999999999977554 4555666654
No 499
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=91.94 E-value=0.23 Score=57.55 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCchhhHHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQ 138 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~ 138 (1094)
-..++|+|..|.|||||++.+...
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l 188 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARA 188 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999988753
No 500
>PRK00300 gmk guanylate kinase; Provisional
Probab=91.93 E-value=0.11 Score=54.52 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=22.6
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
.++|+|+|+.|+||||||+.++...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999999864
Done!