Query 001348
Match_columns 1094
No_of_seqs 996 out of 5937
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 23:31:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001348.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001348hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.8E-41 6.1E-46 410.5 19.5 298 95-404 131-472 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 9.4E-36 3.2E-40 398.9 16.8 304 87-403 119-452 (1249)
3 1vt4_I APAF-1 related killer D 100.0 2.6E-35 8.9E-40 358.0 16.0 277 92-396 128-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 6.3E-33 2.1E-37 340.8 23.4 335 88-441 120-508 (591)
5 4eco_A Uncharacterized protein 100.0 8.2E-33 2.8E-37 341.7 24.4 324 481-820 198-583 (636)
6 3rgz_A Protein brassinosteroid 100.0 9.6E-33 3.3E-37 349.1 24.1 150 570-719 396-548 (768)
7 3rgz_A Protein brassinosteroid 100.0 2.3E-32 7.7E-37 345.7 25.2 323 453-796 219-556 (768)
8 4ecn_A Leucine-rich repeat pro 100.0 4.1E-32 1.4E-36 340.9 26.5 370 434-820 324-823 (876)
9 3t6q_A CD180 antigen; protein- 100.0 1.4E-30 5E-35 321.3 30.5 373 438-821 86-542 (606)
10 4eco_A Uncharacterized protein 100.0 2.2E-31 7.5E-36 328.9 22.5 308 499-822 192-562 (636)
11 4ecn_A Leucine-rich repeat pro 100.0 1.3E-30 4.3E-35 327.3 24.8 370 457-853 323-838 (876)
12 3t6q_A CD180 antigen; protein- 100.0 6.6E-30 2.3E-34 315.4 29.9 345 436-802 36-449 (606)
13 2z81_A CD282 antigen, TOLL-lik 100.0 2.4E-29 8.2E-34 306.5 24.8 346 436-809 29-483 (549)
14 2z7x_B TOLL-like receptor 1, v 100.0 4.1E-29 1.4E-33 302.3 23.8 331 437-796 25-438 (520)
15 3vq2_A TLR4, TOLL-like recepto 100.0 5.5E-29 1.9E-33 307.1 24.8 348 437-799 36-470 (606)
16 2z63_A TOLL-like receptor 4, v 100.0 5.6E-29 1.9E-33 304.8 21.6 149 437-606 32-192 (570)
17 2z63_A TOLL-like receptor 4, v 100.0 1.3E-28 4.5E-33 301.4 24.2 354 435-811 54-503 (570)
18 4fmz_A Internalin; leucine ric 100.0 2.7E-27 9.3E-32 270.6 29.3 302 453-809 40-343 (347)
19 3vq2_A TLR4, TOLL-like recepto 100.0 4.1E-28 1.4E-32 299.4 24.1 329 437-795 15-416 (606)
20 1o6v_A Internalin A; bacterial 100.0 1.9E-27 6.6E-32 283.2 28.8 306 452-795 63-370 (466)
21 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.4E-27 4.8E-32 291.5 27.9 349 437-812 56-507 (562)
22 1ziw_A TOLL-like receptor 3; i 100.0 3.9E-27 1.3E-31 294.7 32.6 350 437-795 29-447 (680)
23 3v47_A TOLL-like receptor 5B a 100.0 9.7E-28 3.3E-32 285.1 25.2 337 438-795 35-412 (455)
24 3j0a_A TOLL-like receptor 5; m 100.0 2.3E-27 7.9E-32 303.0 30.4 349 437-809 28-461 (844)
25 1ziw_A TOLL-like receptor 3; i 100.0 4.6E-27 1.6E-31 294.0 30.6 244 569-813 273-571 (680)
26 1o6v_A Internalin A; bacterial 100.0 4.2E-27 1.5E-31 280.2 27.7 316 437-792 72-389 (466)
27 1jl5_A Outer protein YOPM; leu 100.0 1.6E-27 5.4E-32 281.6 23.6 339 438-829 16-366 (454)
28 2z81_A CD282 antigen, TOLL-lik 100.0 1.4E-27 4.8E-32 290.9 23.9 346 439-809 11-441 (549)
29 3j0a_A TOLL-like receptor 5; m 100.0 2.9E-27 9.8E-32 302.1 27.5 361 436-809 51-511 (844)
30 2z7x_B TOLL-like receptor 1, v 100.0 1.5E-27 5.1E-32 288.6 23.2 341 437-809 4-431 (520)
31 3v47_A TOLL-like receptor 5B a 100.0 3.7E-27 1.3E-31 280.0 24.5 293 488-792 28-385 (455)
32 4fmz_A Internalin; leucine ric 100.0 8.9E-27 3E-31 266.3 26.6 297 438-791 49-346 (347)
33 1jl5_A Outer protein YOPM; leu 99.9 3E-26 1E-30 270.7 30.1 289 456-799 90-380 (454)
34 2id5_A Lingo-1, leucine rich r 99.9 2.5E-26 8.4E-31 274.7 24.9 291 489-792 31-334 (477)
35 2id5_A Lingo-1, leucine rich r 99.9 2.9E-26 9.9E-31 274.1 25.4 308 492-812 13-330 (477)
36 3o6n_A APL1; leucine-rich repe 99.9 4.4E-26 1.5E-30 265.0 22.9 300 455-790 43-351 (390)
37 3bz5_A Internalin-J, INLJ; leu 99.9 2.3E-25 8E-30 263.2 29.3 300 450-792 35-353 (457)
38 3o6n_A APL1; leucine-rich repe 99.9 8.6E-26 2.9E-30 262.5 24.7 297 490-809 45-349 (390)
39 1xku_A Decorin; proteoglycan, 99.9 2.3E-25 7.8E-30 252.7 27.6 282 491-789 32-330 (330)
40 3oja_B Anopheles plasmodium-re 99.9 9E-26 3.1E-30 277.1 23.0 299 456-790 50-357 (597)
41 3bz5_A Internalin-J, INLJ; leu 99.9 3.5E-25 1.2E-29 261.7 27.0 284 485-815 38-323 (457)
42 2ft3_A Biglycan; proteoglycan, 99.9 3E-25 1E-29 252.0 25.2 281 491-789 34-331 (332)
43 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.9E-25 1.3E-29 269.8 27.9 329 456-815 30-465 (562)
44 3oja_B Anopheles plasmodium-re 99.9 2.2E-25 7.4E-30 273.7 24.1 298 490-810 51-356 (597)
45 1ogq_A PGIP-2, polygalacturona 99.9 5.5E-26 1.9E-30 255.4 16.2 243 569-813 51-302 (313)
46 4g8a_A TOLL-like receptor 4; l 99.9 4.9E-24 1.7E-28 264.2 27.8 356 436-816 55-556 (635)
47 3g06_A SSPH2 (leucine-rich rep 99.9 4.6E-24 1.6E-28 259.6 24.7 224 551-802 85-308 (622)
48 1ogq_A PGIP-2, polygalacturona 99.9 3.2E-25 1.1E-29 249.2 13.3 225 569-795 77-308 (313)
49 4fcg_A Uncharacterized protein 99.9 1.3E-24 4.5E-29 245.7 18.2 218 569-811 82-310 (328)
50 2ft3_A Biglycan; proteoglycan, 99.9 5.6E-24 1.9E-28 241.4 23.0 221 569-795 55-281 (332)
51 1xku_A Decorin; proteoglycan, 99.9 3.8E-23 1.3E-27 234.3 26.6 258 512-790 31-305 (330)
52 4fcg_A Uncharacterized protein 99.9 7E-24 2.4E-28 239.7 19.5 215 548-788 82-311 (328)
53 4g8a_A TOLL-like receptor 4; l 99.9 1.9E-22 6.3E-27 250.0 28.0 236 569-808 329-576 (635)
54 3g06_A SSPH2 (leucine-rich rep 99.9 1.5E-22 5.2E-27 246.2 25.9 264 458-775 41-305 (622)
55 2z66_A Variable lymphocyte rec 99.9 1.7E-22 5.8E-27 226.4 20.4 241 551-793 11-263 (306)
56 1z7x_W Ribonuclease inhibitor; 99.9 1.1E-25 3.7E-30 267.8 -6.0 357 437-810 7-438 (461)
57 3zyj_A Leucine-rich repeat-con 99.9 3E-22 1E-26 236.4 23.0 232 559-791 54-292 (440)
58 2z80_A TOLL-like receptor 2, v 99.9 1.9E-23 6.5E-28 239.2 11.1 224 569-792 53-315 (353)
59 3zyi_A Leucine-rich repeat-con 99.9 3E-22 1E-26 237.3 21.3 232 559-791 65-303 (452)
60 1ozn_A Reticulon 4 receptor; N 99.9 5.4E-22 1.8E-26 219.9 20.3 223 571-795 14-242 (285)
61 2z66_A Variable lymphocyte rec 99.9 7E-22 2.4E-26 221.4 19.4 237 570-808 9-257 (306)
62 1wwl_A Monocyte differentiatio 99.9 1.2E-23 4.2E-28 236.2 4.6 236 551-792 47-310 (312)
63 1ozn_A Reticulon 4 receptor; N 99.9 5.2E-22 1.8E-26 220.0 17.1 245 551-796 15-266 (285)
64 3o53_A Protein LRIM1, AGAP0063 99.9 6E-23 2.1E-27 231.2 8.0 232 569-810 35-270 (317)
65 3zyj_A Leucine-rich repeat-con 99.9 3.8E-21 1.3E-25 227.0 22.4 239 569-810 44-287 (440)
66 3zyi_A Leucine-rich repeat-con 99.9 3.8E-21 1.3E-25 227.8 22.5 239 569-810 55-298 (452)
67 2z80_A TOLL-like receptor 2, v 99.9 4.8E-22 1.6E-26 227.5 14.2 261 495-771 36-317 (353)
68 3oja_A Leucine-rich immune mol 99.9 4.6E-22 1.6E-26 237.2 11.4 231 569-809 35-269 (487)
69 1wwl_A Monocyte differentiatio 99.9 3.9E-22 1.3E-26 224.0 9.2 238 569-813 44-307 (312)
70 3o53_A Protein LRIM1, AGAP0063 99.9 2.2E-22 7.4E-27 226.6 6.0 213 569-791 59-275 (317)
71 1z7x_W Ribonuclease inhibitor; 99.8 6.1E-23 2.1E-27 244.1 -1.7 334 456-809 2-408 (461)
72 2z62_A TOLL-like receptor 4, v 99.8 2.1E-20 7.3E-25 205.9 17.7 213 560-795 19-241 (276)
73 3jrn_A AT1G72930 protein; TIR 99.8 4E-21 1.4E-25 190.0 7.7 82 1-86 93-174 (176)
74 3oja_A Leucine-rich immune mol 99.8 7.4E-21 2.5E-25 226.7 11.1 208 569-786 59-270 (487)
75 2z62_A TOLL-like receptor 4, v 99.8 5.6E-20 1.9E-24 202.6 16.8 197 548-768 29-237 (276)
76 1p9a_G Platelet glycoprotein I 99.8 1.7E-19 5.7E-24 199.9 20.1 197 569-791 11-208 (290)
77 2o6q_A Variable lymphocyte rec 99.8 5.6E-19 1.9E-23 193.8 21.1 201 569-793 17-220 (270)
78 3ozi_A L6TR; plant TIR domain, 99.8 1.2E-20 4E-25 189.3 6.0 81 2-84 122-202 (204)
79 2xwt_C Thyrotropin receptor; s 99.8 2E-19 6.8E-24 193.6 14.5 205 559-789 22-237 (239)
80 4glp_A Monocyte differentiatio 99.8 2.2E-19 7.7E-24 201.3 14.8 221 569-792 65-308 (310)
81 2xwt_C Thyrotropin receptor; s 99.8 2.5E-19 8.7E-24 192.8 14.0 210 574-811 17-238 (239)
82 1h6u_A Internalin H; cell adhe 99.8 7.9E-19 2.7E-23 196.5 17.0 192 589-791 39-230 (308)
83 1h6u_A Internalin H; cell adhe 99.8 8E-19 2.7E-23 196.4 16.9 194 569-773 42-235 (308)
84 2o6q_A Variable lymphocyte rec 99.8 3.1E-18 1E-22 187.9 20.5 195 592-812 17-215 (270)
85 3rfs_A Internalin B, repeat mo 99.8 1E-18 3.4E-23 192.0 16.3 204 569-804 42-248 (272)
86 4glp_A Monocyte differentiatio 99.8 1.2E-18 4E-23 195.4 16.2 197 569-769 92-308 (310)
87 3ogk_B Coronatine-insensitive 99.8 3.3E-20 1.1E-24 227.9 2.8 322 454-792 161-527 (592)
88 2ca6_A RAN GTPase-activating p 99.8 5.4E-20 1.8E-24 213.2 3.5 227 569-795 33-320 (386)
89 2ast_B S-phase kinase-associat 99.8 1.5E-19 5.3E-24 205.1 6.4 228 569-799 71-314 (336)
90 1p9a_G Platelet glycoprotein I 99.8 1E-17 3.6E-22 185.4 19.7 192 551-768 14-208 (290)
91 3rfs_A Internalin B, repeat mo 99.8 9.5E-18 3.2E-22 184.2 17.9 211 590-809 18-232 (272)
92 2ca6_A RAN GTPase-activating p 99.7 9.9E-20 3.4E-24 211.0 0.8 241 569-809 10-313 (386)
93 3ogk_B Coronatine-insensitive 99.7 7.8E-20 2.7E-24 224.6 -1.7 257 551-810 224-524 (592)
94 3cvr_A Invasion plasmid antige 99.7 4.7E-18 1.6E-22 204.1 13.2 186 569-800 60-252 (571)
95 2ast_B S-phase kinase-associat 99.7 9.5E-19 3.2E-23 198.6 4.8 235 569-807 48-301 (336)
96 4ay9_X Follicle-stimulating ho 99.7 2.5E-17 8.4E-22 187.9 16.1 219 551-795 13-240 (350)
97 3cvr_A Invasion plasmid antige 99.7 2.4E-17 8.2E-22 198.0 16.6 191 549-777 61-253 (571)
98 4ay9_X Follicle-stimulating ho 99.7 7.3E-17 2.5E-21 184.0 19.8 198 493-703 12-219 (350)
99 3m19_A Variable lymphocyte rec 99.7 9E-17 3.1E-21 174.1 18.5 176 569-768 15-192 (251)
100 3goz_A Leucine-rich repeat-con 99.7 2E-18 6.7E-23 198.1 3.7 225 569-793 23-299 (362)
101 1h6t_A Internalin B; cell adhe 99.7 4.7E-17 1.6E-21 180.4 13.8 171 613-792 44-214 (291)
102 1dce_A Protein (RAB geranylger 99.7 6.2E-19 2.1E-23 213.0 -1.8 203 569-785 350-567 (567)
103 2p1m_B Transport inhibitor res 99.7 5E-19 1.7E-23 217.4 -3.1 226 583-811 257-518 (594)
104 2p1m_B Transport inhibitor res 99.7 3.4E-19 1.2E-23 219.0 -5.8 316 455-790 128-518 (594)
105 3goz_A Leucine-rich repeat-con 99.7 4.9E-18 1.7E-22 194.8 4.1 242 572-813 2-295 (362)
106 3m19_A Variable lymphocyte rec 99.7 5.1E-16 1.7E-20 168.2 18.4 156 640-795 36-196 (251)
107 1h6t_A Internalin B; cell adhe 99.7 1E-16 3.4E-21 177.7 12.7 190 572-772 28-217 (291)
108 1m9s_A Internalin B; cell inva 99.7 2E-16 6.9E-21 192.1 15.4 189 570-792 23-211 (605)
109 1m9s_A Internalin B; cell inva 99.6 4.9E-16 1.7E-20 188.8 14.7 170 569-771 44-213 (605)
110 1dce_A Protein (RAB geranylger 99.6 2.5E-17 8.6E-22 198.9 -0.3 194 588-795 346-550 (567)
111 2o6s_A Variable lymphocyte rec 99.6 1.5E-15 5.3E-20 159.3 12.6 179 571-779 10-190 (208)
112 1xeu_A Internalin C; cellular 99.6 1.2E-15 4E-20 166.3 10.9 150 636-793 38-187 (263)
113 4ezg_A Putative uncharacterize 99.6 3.7E-15 1.3E-19 154.9 11.2 148 638-790 43-193 (197)
114 2o6s_A Variable lymphocyte rec 99.6 1.1E-14 3.7E-19 152.8 14.6 156 641-802 30-189 (208)
115 3e6j_A Variable lymphocyte rec 99.6 2E-14 6.8E-19 153.2 16.6 153 641-795 21-176 (229)
116 2qen_A Walker-type ATPase; unk 99.6 4.6E-14 1.6E-18 160.7 20.7 287 88-396 8-348 (350)
117 4ezg_A Putative uncharacterize 99.6 9.1E-15 3.1E-19 151.9 13.4 147 569-720 45-192 (197)
118 2fna_A Conserved hypothetical 99.6 2.8E-14 9.6E-19 163.0 18.6 287 88-395 9-355 (357)
119 1xeu_A Internalin C; cellular 99.6 5.8E-15 2E-19 160.8 11.0 172 590-772 18-189 (263)
120 2v9t_B SLIT homolog 2 protein 99.6 2E-14 6.7E-19 152.2 14.5 151 571-745 14-165 (220)
121 2xot_A Amphoterin-induced prot 99.6 8.6E-15 3E-19 167.5 12.4 129 571-701 21-151 (361)
122 2v9t_B SLIT homolog 2 protein 99.5 4.3E-14 1.5E-18 149.5 14.7 147 643-791 15-165 (220)
123 2v70_A SLIT-2, SLIT homolog 2 99.5 5.9E-14 2E-18 148.5 14.5 151 571-745 14-166 (220)
124 2v70_A SLIT-2, SLIT homolog 2 99.5 5.8E-14 2E-18 148.5 14.2 148 551-699 15-166 (220)
125 3e6j_A Variable lymphocyte rec 99.5 7E-14 2.4E-18 149.0 14.9 151 570-745 21-172 (229)
126 1w5s_A Origin recognition comp 99.5 9.3E-14 3.2E-18 162.2 16.0 282 90-382 20-371 (412)
127 2xot_A Amphoterin-induced prot 99.5 5.6E-14 1.9E-18 160.8 12.9 172 493-698 21-201 (361)
128 4b8c_D Glucose-repressible alc 99.5 1.7E-14 5.9E-19 179.7 5.6 191 614-809 172-369 (727)
129 2qby_B CDC6 homolog 3, cell di 99.5 2.6E-12 8.8E-17 148.3 23.3 272 92-382 20-339 (384)
130 4b8c_D Glucose-repressible alc 99.5 1.6E-14 5.4E-19 180.0 4.8 193 569-788 174-369 (727)
131 2ell_A Acidic leucine-rich nuc 99.4 1.4E-13 4.8E-18 138.9 9.8 133 569-703 25-164 (168)
132 2ell_A Acidic leucine-rich nuc 99.4 1.7E-13 5.7E-18 138.4 8.9 136 615-772 24-164 (168)
133 2qby_A CDC6 homolog 1, cell di 99.4 1.1E-11 3.8E-16 143.0 21.7 282 89-382 17-348 (386)
134 2je0_A Acidic leucine-rich nuc 99.4 4.6E-13 1.6E-17 132.2 7.5 123 663-786 18-148 (149)
135 2je0_A Acidic leucine-rich nuc 99.4 6.3E-13 2.1E-17 131.2 7.9 123 569-693 18-147 (149)
136 1w8a_A SLIT protein; signaling 99.4 2.2E-12 7.6E-17 133.2 11.3 127 571-699 11-139 (192)
137 1a9n_A U2A', U2A'; complex (nu 99.3 2.9E-12 9.8E-17 130.3 8.7 102 687-789 43-151 (176)
138 1w8a_A SLIT protein; signaling 99.3 9E-12 3.1E-16 128.6 11.5 128 551-679 12-143 (192)
139 1a9n_A U2A', U2A'; complex (nu 99.3 2E-12 6.9E-17 131.5 6.4 130 639-771 19-156 (176)
140 2wfh_A SLIT homolog 2 protein 99.3 1.2E-11 4.2E-16 127.6 12.1 105 569-673 32-137 (193)
141 2v1u_A Cell division control p 99.3 5.3E-11 1.8E-15 137.3 18.5 277 90-382 17-351 (387)
142 2wfh_A SLIT homolog 2 protein 99.3 1.6E-11 5.4E-16 126.8 12.4 126 571-699 13-139 (193)
143 2o6r_A Variable lymphocyte rec 99.2 4E-11 1.4E-15 121.9 12.8 128 570-699 9-137 (177)
144 3sb4_A Hypothetical leucine ri 99.2 1.8E-11 6.3E-16 137.9 10.1 99 685-785 225-328 (329)
145 1ds9_A Outer arm dynein; leuci 99.2 1.3E-13 4.5E-18 143.2 -7.1 55 730-784 113-180 (198)
146 2o6r_A Variable lymphocyte rec 99.2 1.1E-10 3.6E-15 118.8 14.4 131 641-795 9-141 (177)
147 1ds9_A Outer arm dynein; leuci 99.2 2.8E-13 9.6E-18 140.7 -5.8 101 569-673 24-126 (198)
148 1fnn_A CDC6P, cell division co 99.2 4E-10 1.4E-14 130.0 18.3 281 90-382 15-351 (389)
149 1njg_A DNA polymerase III subu 99.2 2.2E-10 7.7E-15 122.6 15.0 199 88-299 19-231 (250)
150 3sb4_A Hypothetical leucine ri 99.1 1.1E-10 3.6E-15 131.7 11.1 212 569-790 26-309 (329)
151 2chg_A Replication factor C sm 99.1 2.1E-09 7.1E-14 113.3 16.3 188 88-296 13-204 (226)
152 3g39_A Variable lymphocyte rec 99.0 5.6E-10 1.9E-14 112.5 10.1 106 569-676 10-116 (170)
153 2r9u_A Variable lymphocyte rec 99.0 5.2E-10 1.8E-14 113.2 9.7 104 570-675 14-118 (174)
154 4fdw_A Leucine rich hypothetic 99.0 9.5E-09 3.2E-13 118.4 20.7 103 686-792 248-359 (401)
155 3g39_A Variable lymphocyte rec 99.0 1.5E-09 5.2E-14 109.3 12.2 105 688-794 11-118 (170)
156 4fdw_A Leucine rich hypothetic 99.0 1E-08 3.5E-13 118.1 20.2 149 634-788 221-380 (401)
157 2r9u_A Variable lymphocyte rec 99.0 3.2E-09 1.1E-13 107.4 12.2 107 642-772 15-122 (174)
158 4fs7_A Uncharacterized protein 98.9 1.3E-07 4.4E-12 109.2 23.5 124 658-786 249-374 (394)
159 3un9_A NLR family member X1; l 98.9 1.6E-10 5.5E-15 132.0 -1.7 60 731-790 182-251 (372)
160 1sxj_B Activator 1 37 kDa subu 98.9 1.3E-08 4.3E-13 114.2 13.6 187 88-296 17-210 (323)
161 3un9_A NLR family member X1; l 98.8 3.6E-10 1.2E-14 129.1 -1.6 42 728-769 207-253 (372)
162 2ifg_A High affinity nerve gro 98.7 1.4E-08 4.8E-13 115.1 9.2 103 572-675 12-116 (347)
163 1iqp_A RFCS; clamp loader, ext 98.7 4.6E-08 1.6E-12 109.7 13.2 188 88-297 21-213 (327)
164 4fs7_A Uncharacterized protein 98.7 3.5E-07 1.2E-11 105.5 19.7 315 445-783 59-393 (394)
165 2ifg_A High affinity nerve gro 98.7 4.8E-08 1.6E-12 110.7 10.1 101 691-792 13-117 (347)
166 1hqc_A RUVB; extended AAA-ATPa 98.6 7.4E-07 2.5E-11 99.7 18.6 263 88-393 8-309 (324)
167 2chq_A Replication factor C sm 98.5 7.3E-07 2.5E-11 99.4 15.9 185 88-295 13-203 (319)
168 2ra8_A Uncharacterized protein 98.5 4.4E-08 1.5E-12 110.8 3.9 62 730-791 250-320 (362)
169 1sxj_A Activator 1 95 kDa subu 98.5 1.7E-06 5.7E-11 103.2 17.0 192 88-295 35-252 (516)
170 1jbk_A CLPB protein; beta barr 98.5 3.1E-07 1.1E-11 93.8 9.2 52 88-141 18-69 (195)
171 1jr3_A DNA polymerase III subu 98.5 1.1E-06 3.9E-11 100.3 14.5 197 88-297 12-222 (373)
172 3d8b_A Fidgetin-like protein 1 98.4 2.4E-06 8.2E-11 96.8 16.8 203 66-297 62-296 (357)
173 2ra8_A Uncharacterized protein 98.4 1.1E-07 3.9E-12 107.4 5.3 159 608-768 132-320 (362)
174 3bos_A Putative DNA replicatio 98.4 4.7E-07 1.6E-11 96.4 9.6 174 89-295 25-216 (242)
175 3h4m_A Proteasome-activating n 98.4 2E-06 7E-11 94.2 15.0 180 88-294 13-229 (285)
176 3te6_A Regulatory protein SIR3 98.4 9.1E-07 3.1E-11 97.2 10.9 164 93-264 21-211 (318)
177 2z4s_A Chromosomal replication 98.4 1E-06 3.5E-11 102.6 11.7 181 90-293 103-303 (440)
178 3b9p_A CG5977-PA, isoform A; A 98.4 6.3E-06 2.2E-10 90.9 17.4 199 73-296 2-233 (297)
179 1d2n_A N-ethylmaleimide-sensit 98.3 7.8E-06 2.7E-10 88.9 17.3 169 92-288 33-229 (272)
180 4gt6_A Cell surface protein; l 98.3 4.1E-05 1.4E-09 88.1 24.2 107 681-789 260-368 (394)
181 3eie_A Vacuolar protein sortin 98.3 7.3E-06 2.5E-10 91.4 17.3 184 88-296 14-228 (322)
182 2qz4_A Paraplegin; AAA+, SPG7, 98.3 6.1E-06 2.1E-10 89.0 15.6 184 89-295 3-221 (262)
183 2qp9_X Vacuolar protein sortin 98.3 1.1E-05 3.9E-10 91.0 17.7 184 88-296 47-261 (355)
184 3pfi_A Holliday junction ATP-d 98.3 8E-06 2.7E-10 91.9 16.1 254 88-386 25-318 (338)
185 1sxj_D Activator 1 41 kDa subu 98.3 9.6E-06 3.3E-10 91.7 16.0 196 88-295 33-234 (353)
186 1xwi_A SKD1 protein; VPS4B, AA 98.2 2.1E-05 7.2E-10 87.5 17.3 185 88-297 8-224 (322)
187 3pvs_A Replication-associated 98.2 5.9E-06 2E-10 96.0 13.1 179 88-295 22-214 (447)
188 4gt6_A Cell surface protein; l 98.2 2.9E-05 9.8E-10 89.3 18.6 309 447-789 53-389 (394)
189 1sxj_E Activator 1 40 kDa subu 98.2 9.2E-06 3.1E-10 92.0 13.6 201 88-296 10-237 (354)
190 1l8q_A Chromosomal replication 98.2 1.5E-05 5E-10 89.1 14.7 178 89-290 8-202 (324)
191 4h09_A Hypothetical leucine ri 98.2 0.00012 4E-09 83.7 22.6 103 682-786 236-341 (379)
192 2p65_A Hypothetical protein PF 98.2 9.3E-06 3.2E-10 82.3 11.9 52 88-141 18-69 (187)
193 3vfd_A Spastin; ATPase, microt 98.2 2.6E-05 8.9E-10 89.4 16.7 184 88-296 111-326 (389)
194 2zan_A Vacuolar protein sortin 98.1 2.8E-05 9.7E-10 90.5 16.6 184 88-296 130-345 (444)
195 3uk6_A RUVB-like 2; hexameric 98.1 3E-05 1E-09 88.2 16.4 197 91-295 43-302 (368)
196 3syl_A Protein CBBX; photosynt 98.1 1.5E-05 5E-10 88.4 13.2 150 93-265 32-218 (309)
197 3u61_B DNA polymerase accessor 98.0 4.1E-05 1.4E-09 85.4 14.6 179 88-292 22-212 (324)
198 3cf0_A Transitional endoplasmi 98.0 8.5E-05 2.9E-09 81.9 15.9 155 88-265 11-200 (301)
199 4h09_A Hypothetical leucine ri 98.0 0.00029 9.9E-09 80.4 20.4 110 658-771 236-348 (379)
200 1io0_A Tropomodulin; LRR prote 97.8 4.4E-06 1.5E-10 85.0 2.1 117 656-790 30-163 (185)
201 4b4t_J 26S protease regulatory 97.8 0.00014 4.7E-09 81.8 13.6 173 90-289 146-354 (405)
202 1io0_A Tropomodulin; LRR prote 97.8 9.2E-06 3.1E-10 82.6 3.5 84 586-669 31-128 (185)
203 1lv7_A FTSH; alpha/beta domain 97.8 0.0002 6.7E-09 76.9 13.8 154 88-264 8-195 (257)
204 3rw6_A Nuclear RNA export fact 97.7 1.4E-05 4.7E-10 85.7 4.1 66 613-679 168-237 (267)
205 1a5t_A Delta prime, HOLB; zinc 97.7 0.00025 8.4E-09 79.3 14.5 173 98-296 8-205 (334)
206 1sxj_C Activator 1 40 kDa subu 97.7 0.00035 1.2E-08 78.4 15.7 184 88-293 21-209 (340)
207 3hu3_A Transitional endoplasmi 97.7 0.00018 6.2E-09 84.3 13.6 180 90-295 202-414 (489)
208 2w58_A DNAI, primosome compone 97.7 4.9E-05 1.7E-09 78.3 6.9 62 89-150 22-89 (202)
209 4b4t_M 26S protease regulatory 97.7 0.00019 6.6E-09 81.9 12.3 172 90-288 179-386 (434)
210 4b4t_H 26S protease regulatory 97.6 0.00028 9.4E-09 80.5 13.1 171 92-289 209-415 (467)
211 4b4t_L 26S protease subunit RP 97.6 0.00036 1.2E-08 79.8 13.8 172 91-289 180-387 (437)
212 3ec2_A DNA replication protein 97.6 6E-05 2E-09 76.1 6.5 51 90-140 8-63 (180)
213 1in4_A RUVB, holliday junction 97.6 0.00077 2.6E-08 75.3 16.1 176 88-295 21-222 (334)
214 3n70_A Transport activator; si 97.6 5.4E-05 1.8E-09 73.5 5.6 47 93-139 2-48 (145)
215 3pxg_A Negative regulator of g 97.6 0.00047 1.6E-08 80.8 13.9 149 88-264 176-338 (468)
216 2ce7_A Cell division protein F 97.5 0.001 3.5E-08 77.2 16.2 174 90-289 14-221 (476)
217 1qvr_A CLPB protein; coiled co 97.5 0.00018 6.1E-09 91.1 10.4 52 88-141 166-217 (854)
218 3e4g_A ATP synthase subunit S, 97.5 7.1E-05 2.4E-09 74.3 5.3 19 658-676 135-153 (176)
219 1r6b_X CLPA protein; AAA+, N-t 97.5 0.00061 2.1E-08 85.3 14.9 154 88-264 182-362 (758)
220 4fcw_A Chaperone protein CLPB; 97.5 0.00041 1.4E-08 76.7 11.4 50 93-142 18-74 (311)
221 2r62_A Cell division protease 97.5 8E-05 2.7E-09 80.5 5.4 155 88-264 7-196 (268)
222 4b4t_I 26S protease regulatory 97.5 0.00077 2.6E-08 76.0 13.2 172 90-288 180-387 (437)
223 3rw6_A Nuclear RNA export fact 97.4 9.3E-05 3.2E-09 79.2 5.3 65 730-795 168-237 (267)
224 1ofh_A ATP-dependent HSL prote 97.4 0.00027 9.3E-09 78.0 9.2 49 93-141 16-76 (310)
225 4b4t_K 26S protease regulatory 97.4 0.0016 5.4E-08 74.4 15.1 171 91-288 171-378 (428)
226 2bjv_A PSP operon transcriptio 97.4 0.001 3.4E-08 71.7 12.8 50 91-140 5-54 (265)
227 3pxi_A Negative regulator of g 97.3 0.0014 4.9E-08 81.8 14.6 149 88-264 176-338 (758)
228 3t15_A Ribulose bisphosphate c 97.2 0.0014 4.7E-08 71.7 12.0 29 114-142 35-63 (293)
229 3e4g_A ATP synthase subunit S, 97.2 0.00023 7.7E-09 70.7 4.9 84 569-652 62-153 (176)
230 1ojl_A Transcriptional regulat 97.2 0.001 3.5E-08 73.1 10.5 48 92-139 2-49 (304)
231 3co5_A Putative two-component 97.1 0.00011 3.7E-09 71.1 1.5 48 92-139 4-51 (143)
232 2gno_A DNA polymerase III, gam 97.1 0.0012 4.1E-08 72.4 9.6 146 96-264 1-152 (305)
233 2kjq_A DNAA-related protein; s 97.1 0.00049 1.7E-08 66.9 5.8 44 93-141 19-62 (149)
234 1ixz_A ATP-dependent metallopr 97.0 0.0047 1.6E-07 65.8 13.6 153 89-264 13-199 (254)
235 3cf2_A TER ATPase, transitiona 97.0 0.0017 5.8E-08 79.8 11.0 172 91-289 203-407 (806)
236 2c9o_A RUVB-like 1; hexameric 97.0 0.011 3.7E-07 69.0 17.3 51 90-140 35-88 (456)
237 1iy2_A ATP-dependent metallopr 96.9 0.0024 8.2E-08 69.2 10.2 154 88-264 36-223 (278)
238 2dhr_A FTSH; AAA+ protein, hex 96.9 0.0041 1.4E-07 72.7 12.5 151 88-264 27-214 (499)
239 2x8a_A Nuclear valosin-contain 96.9 0.02 7E-07 61.6 17.0 151 91-264 9-191 (274)
240 3m6a_A ATP-dependent protease 96.8 0.0053 1.8E-07 73.1 12.7 51 93-143 82-136 (543)
241 1ypw_A Transitional endoplasmi 96.8 0.0027 9.1E-08 79.3 10.3 152 90-264 202-385 (806)
242 3pxi_A Negative regulator of g 96.7 0.0044 1.5E-07 77.3 11.4 150 92-264 491-675 (758)
243 1zu4_A FTSY; GTPase, signal re 96.5 0.0075 2.6E-07 66.4 10.0 116 18-150 11-139 (320)
244 1vma_A Cell division protein F 96.5 0.0076 2.6E-07 65.8 9.8 52 98-150 81-138 (306)
245 2qgz_A Helicase loader, putati 96.1 0.012 4E-07 64.7 8.6 62 89-150 121-188 (308)
246 3lw7_A Adenylate kinase relate 95.8 0.018 6.2E-07 57.0 8.1 20 116-135 2-21 (179)
247 1r6b_X CLPA protein; AAA+, N-t 95.8 0.011 3.7E-07 73.9 7.7 48 92-139 458-512 (758)
248 1ye8_A Protein THEP1, hypothet 95.8 0.049 1.7E-06 54.3 11.1 24 117-140 2-25 (178)
249 1j8m_F SRP54, signal recogniti 95.8 0.019 6.3E-07 62.6 8.6 28 115-142 98-125 (297)
250 1pgv_A TMD-1, tropomodulin TMD 95.6 0.0047 1.6E-07 62.4 2.5 33 732-764 98-135 (197)
251 2vhj_A Ntpase P4, P4; non- hyd 95.5 0.019 6.6E-07 62.3 7.2 24 115-138 123-146 (331)
252 3rfe_A Platelet glycoprotein I 95.5 0.019 6.3E-07 54.1 6.3 55 735-791 11-68 (130)
253 2cvh_A DNA repair and recombin 95.5 0.02 6.7E-07 59.2 7.1 33 115-150 20-52 (220)
254 1rj9_A FTSY, signal recognitio 95.4 0.033 1.1E-06 60.7 9.0 35 114-149 101-135 (304)
255 2eyu_A Twitching motility prot 95.4 0.0053 1.8E-07 65.6 2.5 112 114-236 24-135 (261)
256 3jvv_A Twitching mobility prot 95.4 0.0068 2.3E-07 67.8 3.5 110 116-237 124-234 (356)
257 2xxa_A Signal recognition part 95.4 0.11 3.6E-06 59.7 13.4 50 100-149 78-134 (433)
258 1qvr_A CLPB protein; coiled co 95.2 0.024 8.2E-07 71.6 8.1 49 93-141 559-614 (854)
259 3b9q_A Chloroplast SRP recepto 95.2 0.039 1.3E-06 60.1 8.7 35 114-149 99-133 (302)
260 2yhs_A FTSY, cell division pro 95.2 0.034 1.2E-06 64.0 8.5 36 114-150 292-327 (503)
261 1g5t_A COB(I)alamin adenosyltr 95.2 0.033 1.1E-06 55.9 7.4 115 116-235 29-164 (196)
262 3c8u_A Fructokinase; YP_612366 95.2 0.019 6.4E-07 59.1 5.7 40 101-140 8-47 (208)
263 3dm5_A SRP54, signal recogniti 95.2 0.065 2.2E-06 61.2 10.4 29 114-142 99-127 (443)
264 3e70_C DPA, signal recognition 95.1 0.067 2.3E-06 58.9 10.2 28 114-141 128-155 (328)
265 1pgv_A TMD-1, tropomodulin TMD 94.9 0.017 5.6E-07 58.4 4.2 84 588-671 38-135 (197)
266 2v3c_C SRP54, signal recogniti 94.9 0.032 1.1E-06 64.0 7.1 29 114-142 98-126 (432)
267 3ice_A Transcription terminati 94.8 0.014 4.9E-07 64.5 3.7 28 116-143 175-202 (422)
268 3umf_A Adenylate kinase; rossm 94.8 0.021 7.3E-07 58.8 4.7 27 113-139 27-53 (217)
269 1qhx_A CPT, protein (chloramph 94.8 0.012 4.2E-07 58.6 2.8 25 116-140 4-28 (178)
270 1rz3_A Hypothetical protein rb 94.7 0.039 1.3E-06 56.3 6.6 44 97-140 3-47 (201)
271 2og2_A Putative signal recogni 94.7 0.071 2.4E-06 59.4 9.1 35 114-149 156-190 (359)
272 3sr0_A Adenylate kinase; phosp 94.7 0.02 6.8E-07 58.6 4.3 88 117-214 2-93 (206)
273 3hws_A ATP-dependent CLP prote 94.7 0.018 6E-07 65.0 4.2 47 94-140 17-76 (363)
274 1u0j_A DNA replication protein 94.7 0.076 2.6E-06 56.1 8.6 37 102-138 91-127 (267)
275 3kl4_A SRP54, signal recogniti 94.6 0.09 3.1E-06 60.0 9.8 29 114-142 96-124 (433)
276 1sky_E F1-ATPase, F1-ATP synth 94.6 0.07 2.4E-06 61.1 8.7 54 95-154 137-190 (473)
277 2ga8_A Hypothetical 39.9 kDa p 94.5 0.023 8E-07 62.6 4.5 49 95-143 2-52 (359)
278 1s96_A Guanylate kinase, GMP k 94.5 0.049 1.7E-06 56.4 6.8 26 115-140 16-41 (219)
279 3cf2_A TER ATPase, transitiona 94.5 0.05 1.7E-06 66.9 7.6 151 91-264 476-661 (806)
280 3vaa_A Shikimate kinase, SK; s 94.4 0.019 6.5E-07 58.5 3.3 25 115-139 25-49 (199)
281 3kb2_A SPBC2 prophage-derived 94.4 0.021 7.3E-07 56.3 3.6 25 116-140 2-26 (173)
282 1odf_A YGR205W, hypothetical 3 94.4 0.037 1.3E-06 59.9 5.6 30 112-141 28-57 (290)
283 3trf_A Shikimate kinase, SK; a 94.3 0.021 7.1E-07 57.3 3.2 25 115-139 5-29 (185)
284 2r44_A Uncharacterized protein 94.2 0.018 6.1E-07 64.0 2.8 48 91-142 26-73 (331)
285 2ewv_A Twitching motility prot 94.2 0.024 8.1E-07 64.0 3.6 110 114-235 135-245 (372)
286 3uie_A Adenylyl-sulfate kinase 94.0 0.047 1.6E-06 55.6 5.3 27 114-140 24-50 (200)
287 2b8t_A Thymidine kinase; deoxy 94.0 0.038 1.3E-06 57.1 4.6 35 115-149 12-46 (223)
288 2orw_A Thymidine kinase; TMTK, 94.0 0.026 8.7E-07 56.8 3.1 25 116-140 4-28 (184)
289 1nks_A Adenylate kinase; therm 94.0 0.047 1.6E-06 54.9 5.2 26 116-141 2-27 (194)
290 2px0_A Flagellar biosynthesis 93.9 0.12 4.1E-06 56.1 8.6 28 114-141 104-131 (296)
291 1kgd_A CASK, peripheral plasma 93.9 0.025 8.5E-07 56.6 2.8 25 116-140 6-30 (180)
292 1zp6_A Hypothetical protein AT 93.9 0.031 1E-06 56.4 3.5 24 115-138 9-32 (191)
293 1ly1_A Polynucleotide kinase; 93.8 0.033 1.1E-06 55.4 3.5 22 116-137 3-24 (181)
294 1ex7_A Guanylate kinase; subst 93.7 0.022 7.6E-07 57.1 2.1 28 116-143 2-29 (186)
295 2rhm_A Putative kinase; P-loop 93.7 0.047 1.6E-06 55.0 4.5 26 114-139 4-29 (193)
296 1kag_A SKI, shikimate kinase I 93.6 0.029 1E-06 55.5 2.8 25 116-140 5-29 (173)
297 1g8p_A Magnesium-chelatase 38 93.6 0.029 9.8E-07 62.8 3.0 51 88-140 20-70 (350)
298 3iij_A Coilin-interacting nucl 93.5 0.028 9.7E-07 56.1 2.5 25 115-139 11-35 (180)
299 2yvu_A Probable adenylyl-sulfa 93.5 0.063 2.2E-06 53.8 5.1 28 114-141 12-39 (186)
300 3tlx_A Adenylate kinase 2; str 93.4 0.048 1.7E-06 57.5 4.3 27 113-139 27-53 (243)
301 2bdt_A BH3686; alpha-beta prot 93.4 0.057 1.9E-06 54.3 4.6 22 116-137 3-24 (189)
302 2jaq_A Deoxyguanosine kinase; 93.4 0.039 1.3E-06 56.2 3.4 24 117-140 2-25 (205)
303 1xjc_A MOBB protein homolog; s 93.4 0.056 1.9E-06 53.2 4.3 29 114-142 3-31 (169)
304 1zuh_A Shikimate kinase; alpha 93.4 0.043 1.5E-06 54.0 3.6 26 115-140 7-32 (168)
305 3a00_A Guanylate kinase, GMP k 93.4 0.036 1.2E-06 55.7 3.0 29 116-144 2-30 (186)
306 1um8_A ATP-dependent CLP prote 93.4 0.04 1.4E-06 62.3 3.8 26 115-140 72-97 (376)
307 2ze6_A Isopentenyl transferase 93.4 0.043 1.5E-06 58.2 3.8 25 116-140 2-26 (253)
308 4eun_A Thermoresistant glucoki 93.3 0.059 2E-06 54.9 4.6 26 114-139 28-53 (200)
309 1knq_A Gluconate kinase; ALFA/ 93.3 0.049 1.7E-06 54.0 3.8 25 115-139 8-32 (175)
310 1via_A Shikimate kinase; struc 93.3 0.043 1.5E-06 54.5 3.3 24 117-140 6-29 (175)
311 1kht_A Adenylate kinase; phosp 93.3 0.047 1.6E-06 54.9 3.7 26 116-141 4-29 (192)
312 2c95_A Adenylate kinase 1; tra 93.1 0.046 1.6E-06 55.2 3.4 25 115-139 9-33 (196)
313 3t61_A Gluconokinase; PSI-biol 93.1 0.042 1.5E-06 56.0 3.1 25 115-139 18-42 (202)
314 1tev_A UMP-CMP kinase; ploop, 93.0 0.055 1.9E-06 54.5 3.8 25 115-139 3-27 (196)
315 3rfe_A Platelet glycoprotein I 93.0 0.11 3.8E-06 48.7 5.6 52 572-625 12-65 (130)
316 1ukz_A Uridylate kinase; trans 92.9 0.062 2.1E-06 54.7 4.1 27 113-139 13-39 (203)
317 2iyv_A Shikimate kinase, SK; t 92.9 0.04 1.4E-06 55.2 2.5 24 117-140 4-27 (184)
318 1jr3_D DNA polymerase III, del 92.9 0.82 2.8E-05 50.6 13.6 154 115-294 18-183 (343)
319 1uf9_A TT1252 protein; P-loop, 92.9 0.062 2.1E-06 54.6 3.9 26 113-138 6-31 (203)
320 3cm0_A Adenylate kinase; ATP-b 92.9 0.061 2.1E-06 53.8 3.8 25 115-139 4-28 (186)
321 3tau_A Guanylate kinase, GMP k 92.8 0.042 1.4E-06 56.4 2.5 27 114-140 7-33 (208)
322 2qt1_A Nicotinamide riboside k 92.8 0.07 2.4E-06 54.6 4.2 26 113-138 19-44 (207)
323 1y63_A LMAJ004144AAA protein; 92.8 0.056 1.9E-06 54.2 3.3 25 114-138 9-33 (184)
324 1e6c_A Shikimate kinase; phosp 92.8 0.045 1.5E-06 54.0 2.6 25 116-140 3-27 (173)
325 3ney_A 55 kDa erythrocyte memb 92.7 0.048 1.6E-06 55.1 2.8 27 114-140 18-44 (197)
326 2plr_A DTMP kinase, probable t 92.7 0.087 3E-06 53.9 4.9 27 116-142 5-31 (213)
327 1nn5_A Similar to deoxythymidy 92.7 0.084 2.9E-06 54.2 4.7 28 115-142 9-36 (215)
328 2pt5_A Shikimate kinase, SK; a 92.7 0.064 2.2E-06 52.7 3.6 24 117-140 2-25 (168)
329 1qf9_A UMP/CMP kinase, protein 92.6 0.071 2.4E-06 53.6 4.0 25 115-139 6-30 (194)
330 2bwj_A Adenylate kinase 5; pho 92.6 0.065 2.2E-06 54.2 3.7 25 116-140 13-37 (199)
331 2vli_A Antibiotic resistance p 92.6 0.047 1.6E-06 54.5 2.6 26 115-140 5-30 (183)
332 1tue_A Replication protein E1; 92.6 0.07 2.4E-06 53.8 3.7 43 98-141 42-84 (212)
333 3asz_A Uridine kinase; cytidin 92.6 0.076 2.6E-06 54.4 4.2 27 114-140 5-31 (211)
334 1uj2_A Uridine-cytidine kinase 92.6 0.064 2.2E-06 56.9 3.7 28 113-140 20-47 (252)
335 2if2_A Dephospho-COA kinase; a 92.6 0.061 2.1E-06 54.8 3.4 21 117-137 3-23 (204)
336 3tr0_A Guanylate kinase, GMP k 92.6 0.06 2E-06 54.9 3.3 24 116-139 8-31 (205)
337 2qor_A Guanylate kinase; phosp 92.6 0.048 1.6E-06 55.7 2.5 27 114-140 11-37 (204)
338 3nbx_X ATPase RAVA; AAA+ ATPas 92.5 0.051 1.7E-06 63.5 3.0 44 92-139 22-65 (500)
339 4gp7_A Metallophosphoesterase; 92.5 0.052 1.8E-06 53.7 2.6 22 115-136 9-30 (171)
340 1cke_A CK, MSSA, protein (cyti 92.5 0.066 2.3E-06 55.6 3.6 24 116-139 6-29 (227)
341 2ck3_D ATP synthase subunit be 92.4 0.26 8.9E-06 56.3 8.5 52 116-171 154-206 (482)
342 3gmt_A Adenylate kinase; ssgci 92.4 0.2 7E-06 51.7 7.1 23 117-139 10-32 (230)
343 2cdn_A Adenylate kinase; phosp 92.4 0.073 2.5E-06 54.1 3.7 25 115-139 20-44 (201)
344 2pt7_A CAG-ALFA; ATPase, prote 92.4 0.13 4.5E-06 56.8 6.0 105 116-235 172-276 (330)
345 1aky_A Adenylate kinase; ATP:A 92.4 0.063 2.2E-06 55.5 3.2 26 115-140 4-29 (220)
346 3fwy_A Light-independent proto 92.4 0.11 3.9E-06 56.8 5.4 30 113-142 46-75 (314)
347 1g41_A Heat shock protein HSLU 92.4 0.082 2.8E-06 60.4 4.3 50 93-142 16-77 (444)
348 3l0o_A Transcription terminati 92.3 0.24 8.1E-06 54.8 7.6 39 116-154 176-215 (427)
349 3a4m_A L-seryl-tRNA(SEC) kinas 92.3 0.077 2.6E-06 56.5 3.8 26 115-140 4-29 (260)
350 2bbw_A Adenylate kinase 4, AK4 92.2 0.075 2.6E-06 56.1 3.6 25 115-139 27-51 (246)
351 2j41_A Guanylate kinase; GMP, 92.2 0.07 2.4E-06 54.4 3.3 25 115-139 6-30 (207)
352 3tqc_A Pantothenate kinase; bi 92.1 0.097 3.3E-06 57.3 4.4 46 95-140 70-117 (321)
353 1jjv_A Dephospho-COA kinase; P 92.1 0.074 2.5E-06 54.3 3.4 22 116-137 3-24 (206)
354 3p32_A Probable GTPase RV1496/ 92.1 0.18 6.2E-06 56.4 6.8 41 102-142 66-106 (355)
355 2pbr_A DTMP kinase, thymidylat 92.1 0.082 2.8E-06 53.2 3.6 24 117-140 2-25 (195)
356 2wwf_A Thymidilate kinase, put 92.0 0.089 3.1E-06 53.9 3.8 28 115-142 10-37 (212)
357 3nwj_A ATSK2; P loop, shikimat 91.9 0.065 2.2E-06 56.6 2.7 25 116-140 49-73 (250)
358 3hr8_A Protein RECA; alpha and 91.9 0.27 9.1E-06 54.6 7.7 49 102-150 47-96 (356)
359 2grj_A Dephospho-COA kinase; T 91.9 0.087 3E-06 53.2 3.5 25 114-138 11-35 (192)
360 3bh0_A DNAB-like replicative h 91.9 0.12 4.2E-06 56.7 5.0 51 115-172 68-118 (315)
361 1zak_A Adenylate kinase; ATP:A 91.8 0.071 2.4E-06 55.2 2.8 26 115-140 5-30 (222)
362 1gvn_B Zeta; postsegregational 91.8 0.15 5.2E-06 55.1 5.6 26 114-139 32-57 (287)
363 3upu_A ATP-dependent DNA helic 91.8 0.56 1.9E-05 54.4 10.8 43 99-144 32-74 (459)
364 1gtv_A TMK, thymidylate kinase 91.8 0.057 1.9E-06 55.5 2.0 25 117-141 2-26 (214)
365 1lvg_A Guanylate kinase, GMP k 91.7 0.065 2.2E-06 54.5 2.4 25 116-140 5-29 (198)
366 4e22_A Cytidylate kinase; P-lo 91.7 0.087 3E-06 55.8 3.4 25 115-139 27-51 (252)
367 2w0m_A SSO2452; RECA, SSPF, un 91.7 0.13 4.5E-06 53.3 4.8 35 116-150 24-58 (235)
368 3aez_A Pantothenate kinase; tr 91.6 0.11 3.8E-06 56.8 4.2 28 113-140 88-115 (312)
369 3dzd_A Transcriptional regulat 91.6 0.9 3.1E-05 50.8 11.8 49 91-139 128-176 (368)
370 1fx0_B ATP synthase beta chain 91.6 0.17 6E-06 57.9 5.8 52 116-171 166-218 (498)
371 2ffh_A Protein (FFH); SRP54, s 91.6 0.84 2.9E-05 51.9 11.5 29 114-142 97-125 (425)
372 2pez_A Bifunctional 3'-phospho 91.5 0.12 4E-06 51.5 4.0 26 115-140 5-30 (179)
373 1zd8_A GTP:AMP phosphotransfer 91.5 0.09 3.1E-06 54.7 3.2 25 115-139 7-31 (227)
374 4a74_A DNA repair and recombin 91.5 0.088 3E-06 54.6 3.2 26 114-139 24-49 (231)
375 3fb4_A Adenylate kinase; psych 91.5 0.1 3.5E-06 53.7 3.6 23 117-139 2-24 (216)
376 2z0h_A DTMP kinase, thymidylat 91.5 0.1 3.6E-06 52.6 3.6 25 117-141 2-26 (197)
377 1htw_A HI0065; nucleotide-bind 91.4 0.11 3.8E-06 50.6 3.5 26 114-139 32-57 (158)
378 1znw_A Guanylate kinase, GMP k 91.4 0.092 3.1E-06 53.7 3.1 25 115-139 20-44 (207)
379 1m7g_A Adenylylsulfate kinase; 91.4 0.12 4.1E-06 53.0 3.9 26 115-140 25-50 (211)
380 2jeo_A Uridine-cytidine kinase 91.3 0.11 3.8E-06 54.7 3.7 26 114-139 24-49 (245)
381 3k1j_A LON protease, ATP-depen 91.2 0.077 2.6E-06 64.1 2.6 51 88-142 37-87 (604)
382 4a1f_A DNAB helicase, replicat 91.1 0.23 7.9E-06 54.7 6.1 51 116-173 47-97 (338)
383 2f6r_A COA synthase, bifunctio 91.1 0.12 4.2E-06 55.6 3.9 25 113-137 73-97 (281)
384 3d3q_A TRNA delta(2)-isopenten 91.0 0.12 4E-06 56.8 3.6 25 116-140 8-32 (340)
385 2ehv_A Hypothetical protein PH 91.0 0.16 5.5E-06 53.4 4.7 36 115-150 30-66 (251)
386 1z6g_A Guanylate kinase; struc 91.0 0.085 2.9E-06 54.5 2.4 25 115-139 23-47 (218)
387 2dr3_A UPF0273 protein PH0284; 91.0 0.15 5.2E-06 53.4 4.4 36 115-150 23-58 (247)
388 3dl0_A Adenylate kinase; phosp 91.0 0.12 4.1E-06 53.2 3.5 23 117-139 2-24 (216)
389 1vht_A Dephospho-COA kinase; s 90.9 0.13 4.5E-06 53.0 3.8 23 115-137 4-26 (218)
390 2p5t_B PEZT; postsegregational 90.9 0.11 3.7E-06 55.1 3.1 27 114-140 31-57 (253)
391 1n0w_A DNA repair protein RAD5 90.9 0.12 4.2E-06 54.0 3.5 25 115-139 24-48 (243)
392 2wsm_A Hydrogenase expression/ 90.8 0.17 5.8E-06 52.1 4.5 43 98-142 15-57 (221)
393 3ake_A Cytidylate kinase; CMP 90.8 0.13 4.6E-06 52.3 3.7 24 117-140 4-27 (208)
394 3be4_A Adenylate kinase; malar 90.8 0.11 3.6E-06 53.7 2.9 24 116-139 6-29 (217)
395 3r20_A Cytidylate kinase; stru 90.8 0.13 4.5E-06 53.4 3.6 25 115-139 9-33 (233)
396 2r6a_A DNAB helicase, replicat 90.8 0.61 2.1E-05 54.0 9.6 50 115-171 203-253 (454)
397 2i3b_A HCR-ntpase, human cance 90.7 0.12 4.1E-06 52.0 3.1 24 117-140 3-26 (189)
398 2r2a_A Uncharacterized protein 90.6 0.37 1.3E-05 48.8 6.7 22 117-138 7-28 (199)
399 3e1s_A Exodeoxyribonuclease V, 90.6 0.42 1.4E-05 56.9 8.3 27 116-142 205-231 (574)
400 1np6_A Molybdopterin-guanine d 90.6 0.13 4.6E-06 50.8 3.3 27 115-141 6-32 (174)
401 2hf9_A Probable hydrogenase ni 90.6 0.25 8.7E-06 51.0 5.6 29 114-142 37-65 (226)
402 2v54_A DTMP kinase, thymidylat 90.5 0.13 4.6E-06 52.1 3.3 24 116-139 5-28 (204)
403 1e4v_A Adenylate kinase; trans 90.5 0.15 5.2E-06 52.3 3.7 23 117-139 2-24 (214)
404 1ak2_A Adenylate kinase isoenz 90.5 0.14 4.9E-06 53.3 3.6 26 115-140 16-41 (233)
405 3crm_A TRNA delta(2)-isopenten 90.4 0.13 4.4E-06 56.1 3.3 24 116-139 6-29 (323)
406 1a7j_A Phosphoribulokinase; tr 90.4 0.11 3.7E-06 56.3 2.6 27 114-140 4-30 (290)
407 1svm_A Large T antigen; AAA+ f 90.4 0.16 5.5E-06 56.9 4.0 27 113-139 167-193 (377)
408 2xb4_A Adenylate kinase; ATP-b 90.4 0.15 5.1E-06 52.8 3.6 23 117-139 2-24 (223)
409 2q6t_A DNAB replication FORK h 90.4 0.94 3.2E-05 52.2 10.7 52 115-173 200-252 (444)
410 2f1r_A Molybdopterin-guanine d 90.3 0.095 3.2E-06 51.8 1.8 26 116-141 3-28 (171)
411 2zr9_A Protein RECA, recombina 90.2 0.2 6.8E-06 55.7 4.6 49 102-150 47-96 (349)
412 1sq5_A Pantothenate kinase; P- 90.1 0.17 5.8E-06 55.3 3.9 28 113-140 78-105 (308)
413 3lnc_A Guanylate kinase, GMP k 90.1 0.1 3.5E-06 54.4 2.0 25 115-139 27-52 (231)
414 3b85_A Phosphate starvation-in 90.0 0.14 4.8E-06 52.4 2.9 23 116-138 23-45 (208)
415 3a8t_A Adenylate isopentenyltr 90.0 0.11 3.8E-06 56.8 2.2 25 115-139 40-64 (339)
416 1cr0_A DNA primase/helicase; R 89.9 0.25 8.4E-06 53.6 5.0 34 116-149 36-70 (296)
417 1u94_A RECA protein, recombina 89.8 0.21 7.3E-06 55.6 4.4 49 102-150 49-98 (356)
418 3bgw_A DNAB-like replicative h 89.8 0.66 2.2E-05 53.4 8.7 51 115-172 197-247 (444)
419 2pcj_A ABC transporter, lipopr 89.6 0.15 5E-06 52.9 2.7 22 116-137 31-52 (224)
420 2onk_A Molybdate/tungstate ABC 89.5 0.17 5.7E-06 53.1 3.1 25 113-138 23-47 (240)
421 1q3t_A Cytidylate kinase; nucl 89.4 0.19 6.6E-06 52.5 3.5 27 113-139 14-40 (236)
422 2j37_W Signal recognition part 89.3 0.44 1.5E-05 55.5 6.8 30 113-142 99-128 (504)
423 3tif_A Uncharacterized ABC tra 89.3 0.15 5.2E-06 53.2 2.6 23 115-137 31-53 (235)
424 3exa_A TRNA delta(2)-isopenten 89.1 0.21 7.1E-06 54.0 3.5 25 115-139 3-27 (322)
425 1nlf_A Regulatory protein REPA 89.1 0.33 1.1E-05 52.2 5.2 26 116-141 31-56 (279)
426 3foz_A TRNA delta(2)-isopenten 89.0 0.25 8.7E-06 53.2 4.1 26 114-139 9-34 (316)
427 1ltq_A Polynucleotide kinase; 89.0 0.21 7.1E-06 54.3 3.5 23 116-138 3-25 (301)
428 1cp2_A CP2, nitrogenase iron p 89.0 0.36 1.2E-05 51.4 5.4 27 116-142 2-28 (269)
429 3end_A Light-independent proto 88.9 0.34 1.2E-05 52.8 5.2 30 113-142 39-68 (307)
430 1ny5_A Transcriptional regulat 88.9 3.6 0.00012 46.3 13.8 46 92-138 137-183 (387)
431 1yrb_A ATP(GTP)binding protein 88.8 0.36 1.2E-05 51.1 5.3 27 114-140 13-39 (262)
432 2r8r_A Sensor protein; KDPD, P 88.8 0.33 1.1E-05 49.8 4.6 26 117-142 8-33 (228)
433 4eaq_A DTMP kinase, thymidylat 88.8 0.25 8.7E-06 51.3 3.9 28 114-141 25-52 (229)
434 2cbz_A Multidrug resistance-as 88.7 0.18 6E-06 52.8 2.6 24 115-138 31-54 (237)
435 2p67_A LAO/AO transport system 88.7 0.47 1.6E-05 52.6 6.2 29 113-141 54-82 (341)
436 3gfo_A Cobalt import ATP-bindi 88.7 0.18 6E-06 54.0 2.6 22 116-137 35-56 (275)
437 1ls1_A Signal recognition part 88.7 0.36 1.2E-05 52.3 5.1 36 114-150 97-132 (295)
438 2d2e_A SUFC protein; ABC-ATPas 88.6 0.21 7.2E-06 52.7 3.1 22 116-137 30-51 (250)
439 2ocp_A DGK, deoxyguanosine kin 88.5 0.26 8.8E-06 51.7 3.7 26 115-140 2-27 (241)
440 1b0u_A Histidine permease; ABC 88.5 0.18 6.3E-06 53.6 2.6 23 115-137 32-54 (262)
441 4hlc_A DTMP kinase, thymidylat 88.5 0.36 1.2E-05 49.2 4.7 29 116-144 3-31 (205)
442 2zu0_C Probable ATP-dependent 88.5 0.22 7.4E-06 53.2 3.1 24 115-138 46-69 (267)
443 1ji0_A ABC transporter; ATP bi 88.4 0.19 6.5E-06 52.7 2.6 22 116-137 33-54 (240)
444 1mv5_A LMRA, multidrug resista 88.4 0.21 7E-06 52.6 2.8 24 114-137 27-50 (243)
445 4g1u_C Hemin import ATP-bindin 88.4 0.19 6.5E-06 53.6 2.6 22 116-137 38-59 (266)
446 1oix_A RAS-related protein RAB 88.4 0.25 8.6E-06 49.6 3.4 24 115-138 29-52 (191)
447 1ypw_A Transitional endoplasmi 88.3 0.19 6.6E-06 62.6 3.0 53 90-142 475-538 (806)
448 1sgw_A Putative ABC transporte 88.3 0.17 5.7E-06 52.0 2.0 23 116-138 36-58 (214)
449 2olj_A Amino acid ABC transpor 88.2 0.2 6.7E-06 53.3 2.6 23 115-137 50-72 (263)
450 1g6h_A High-affinity branched- 88.2 0.2 6.7E-06 53.2 2.6 22 116-137 34-55 (257)
451 2afh_E Nitrogenase iron protei 88.2 0.42 1.4E-05 51.5 5.4 28 115-142 2-29 (289)
452 3eph_A TRNA isopentenyltransfe 88.2 0.29 9.8E-06 54.9 4.0 25 116-140 3-27 (409)
453 2pze_A Cystic fibrosis transme 88.1 0.21 7E-06 52.0 2.6 23 116-138 35-57 (229)
454 2ff7_A Alpha-hemolysin translo 88.0 0.21 7.2E-06 52.6 2.6 22 116-137 36-57 (247)
455 1vpl_A ABC transporter, ATP-bi 87.9 0.21 7.2E-06 52.8 2.6 23 115-137 41-63 (256)
456 3io5_A Recombination and repai 87.9 0.52 1.8E-05 50.9 5.6 34 117-150 30-65 (333)
457 1xp8_A RECA protein, recombina 87.8 0.68 2.3E-05 51.7 6.8 49 102-150 60-109 (366)
458 2j9r_A Thymidine kinase; TK1, 87.8 1.1 3.9E-05 45.4 7.8 110 114-234 27-138 (214)
459 3fdi_A Uncharacterized protein 87.7 0.31 1.1E-05 49.5 3.6 25 116-140 7-31 (201)
460 2ghi_A Transport protein; mult 87.7 0.22 7.7E-06 52.8 2.6 24 115-138 46-69 (260)
461 2qm8_A GTPase/ATPase; G protei 87.7 0.59 2E-05 51.7 6.1 29 113-141 53-81 (337)
462 2v9p_A Replication protein E1; 87.7 0.28 9.4E-06 53.2 3.3 26 114-139 125-150 (305)
463 2qi9_C Vitamin B12 import ATP- 87.6 0.23 7.8E-06 52.4 2.6 32 116-149 27-58 (249)
464 1g8f_A Sulfate adenylyltransfe 87.6 0.34 1.2E-05 56.4 4.3 43 99-141 379-421 (511)
465 2ixe_A Antigen peptide transpo 87.5 0.23 7.8E-06 53.1 2.6 23 115-137 45-67 (271)
466 1v5w_A DMC1, meiotic recombina 87.5 0.56 1.9E-05 52.0 5.8 36 104-139 111-146 (343)
467 2qmh_A HPR kinase/phosphorylas 87.5 0.25 8.4E-06 49.6 2.6 23 116-138 35-57 (205)
468 2ihy_A ABC transporter, ATP-bi 87.4 0.23 8E-06 53.2 2.6 23 116-138 48-70 (279)
469 2dyk_A GTP-binding protein; GT 87.4 0.33 1.1E-05 46.6 3.5 22 116-137 2-23 (161)
470 2yz2_A Putative ABC transporte 87.4 0.24 8.1E-06 52.9 2.6 23 115-137 33-55 (266)
471 2nq2_C Hypothetical ABC transp 87.4 0.24 8.3E-06 52.3 2.6 23 116-138 32-54 (253)
472 2axn_A 6-phosphofructo-2-kinas 87.3 0.47 1.6E-05 55.8 5.4 30 114-143 34-63 (520)
473 3vr4_D V-type sodium ATPase su 87.3 0.56 1.9E-05 53.2 5.6 87 117-207 153-259 (465)
474 2f9l_A RAB11B, member RAS onco 87.2 0.29 9.9E-06 49.4 3.0 24 115-138 5-28 (199)
475 3sop_A Neuronal-specific septi 87.1 0.32 1.1E-05 51.9 3.5 23 117-139 4-26 (270)
476 2z43_A DNA repair and recombin 87.1 0.4 1.4E-05 52.8 4.3 26 115-140 107-132 (324)
477 1pzn_A RAD51, DNA repair and r 87.0 0.33 1.1E-05 54.0 3.6 27 113-139 129-155 (349)
478 2wji_A Ferrous iron transport 87.0 0.38 1.3E-05 46.8 3.7 22 116-137 4-25 (165)
479 3zvl_A Bifunctional polynucleo 87.0 0.23 7.8E-06 56.8 2.3 26 114-139 257-282 (416)
480 3kta_A Chromosome segregation 86.8 0.34 1.2E-05 48.1 3.3 23 117-139 28-50 (182)
481 3ea0_A ATPase, para family; al 86.6 0.65 2.2E-05 48.5 5.5 39 114-152 3-42 (245)
482 4edh_A DTMP kinase, thymidylat 86.5 0.62 2.1E-05 47.7 5.1 28 115-142 6-33 (213)
483 3vkw_A Replicase large subunit 86.5 1.7 5.8E-05 49.4 9.0 38 100-137 143-183 (446)
484 3thx_A DNA mismatch repair pro 86.2 0.59 2E-05 58.7 5.6 24 114-137 661-684 (934)
485 3fvq_A Fe(3+) IONS import ATP- 86.2 0.35 1.2E-05 53.6 3.3 24 115-138 30-53 (359)
486 2vp4_A Deoxynucleoside kinase; 86.2 0.31 1.1E-05 50.7 2.7 26 113-138 18-43 (230)
487 1nij_A Hypothetical protein YJ 86.2 0.41 1.4E-05 52.5 3.8 25 114-138 3-27 (318)
488 2zej_A Dardarin, leucine-rich 86.2 0.32 1.1E-05 48.4 2.7 21 117-137 4-24 (184)
489 2pjz_A Hypothetical protein ST 86.1 0.31 1.1E-05 51.8 2.6 24 116-139 31-54 (263)
490 2ce2_X GTPase HRAS; signaling 86.0 0.4 1.4E-05 46.1 3.2 22 117-138 5-26 (166)
491 4dzz_A Plasmid partitioning pr 85.9 0.6 2E-05 47.2 4.6 34 116-149 2-36 (206)
492 2h92_A Cytidylate kinase; ross 85.9 0.34 1.2E-05 49.7 2.8 24 116-139 4-27 (219)
493 3gqb_B V-type ATP synthase bet 85.9 0.72 2.5E-05 52.3 5.6 25 116-140 148-172 (464)
494 1tq4_A IIGP1, interferon-induc 85.8 0.31 1E-05 55.3 2.5 24 114-137 68-91 (413)
495 3cr8_A Sulfate adenylyltranfer 85.7 0.49 1.7E-05 55.8 4.3 27 115-141 369-395 (552)
496 2ck3_A ATP synthase subunit al 85.7 1.3 4.3E-05 51.0 7.5 90 116-208 163-274 (510)
497 2zts_A Putative uncharacterize 85.7 0.45 1.5E-05 49.8 3.7 36 115-150 30-66 (251)
498 3zq6_A Putative arsenical pump 85.6 0.88 3E-05 50.0 6.1 35 115-150 14-48 (324)
499 2bbs_A Cystic fibrosis transme 85.5 0.35 1.2E-05 52.1 2.7 24 115-138 64-87 (290)
500 2wjg_A FEOB, ferrous iron tran 85.5 0.49 1.7E-05 46.9 3.7 23 115-137 7-29 (188)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.8e-41 Score=410.49 Aligned_cols=298 Identities=16% Similarity=0.154 Sum_probs=236.6
Q ss_pred eehhHHHHHHHhccccC-CCCeEEEEEEecCCCchhhHHHHHHH----HHhccccceEEeeechhhhccCCChHHHHHHH
Q 001348 95 IGLDARIERIKSLLCIG-LPNIQIMGIWGMGGIGKTTIAGVLFN----QISRKFESKCFMANVREESEKGGGLVHLRDRL 169 (1094)
Q Consensus 95 vGr~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~----~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~l 169 (1094)
|||+.++++|.++|..+ ..++++|+|+|||||||||||+++|+ +++.+|+.++|+. +++... .+...+++.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~-vs~~~~--~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK-DSGTAP--KSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE-CCCCST--THHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE-ECCCCC--CCHHHHHHHH
Confidence 59999999999999654 34689999999999999999999997 6889999999994 443211 3577899999
Q ss_pred HHhhhccCC--cccCC-C-----chHHHHHHhcCC-eEEEEEecCCChHhHHHHhcCCCCCCCCceEEEEeCChhhhhhc
Q 001348 170 LSQILDESI--RIETP-Y-----IPHYIRERLQCM-KVFIVLDDVNKFRQLEYLAGGLDRFGLGSRIIVTSRDKQVLEKY 240 (1094)
Q Consensus 170 l~~l~~~~~--~~~~~-~-----~~~~l~~~L~~k-r~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~ 240 (1094)
+.++..... ..... . ....+++.|++| |+||||||||+.+++ .+.. .+||+||||||++.++..+
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~ 281 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAA 281 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGC
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHc
Confidence 999875422 11111 1 157889999996 999999999999876 3322 2799999999999999877
Q ss_pred C-cCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHHHHHhhhhcCCCHHHHHHHHH-HhhcCC
Q 001348 241 G-VDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAIKVLASFFHRKSKLDWEIALQ-NLKQIS 318 (1094)
Q Consensus 241 ~-~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg~~L~~~~~~~w~~~l~-~l~~~~ 318 (1094)
+ ...+|+|++|+.+||++||.++||.... .+.+.+++++|+++|+|+|||++++|+.|+.++. +|...+. .++...
T Consensus 282 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~~l~~~~ 359 (549)
T 2a5y_B 282 SQTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNKLESRG 359 (549)
T ss_dssp CSCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHHHHHHHC
T ss_pred CCCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHhHHHhhccc
Confidence 5 4478999999999999999999987543 4678889999999999999999999999988742 3333333 233324
Q ss_pred CccHHHHHHHhhhcccHHhhhhhc-----------ccccccCCcCHHHHHHHHhC--CCccc-----------cchhhhh
Q 001348 319 GPEILAVLKISYDELNWEAKNLFL-----------DIACFFKGEDINFVTLILDN--HYSVH-----------YGLSVLV 374 (1094)
Q Consensus 319 ~~~i~~~L~~sy~~L~~~~k~~fl-----------~~a~f~~~~~~~~~~~il~~--~~~~~-----------~~l~~L~ 374 (1094)
...+..++++||+.||+++|.||+ |||+||+++.++ +..|.+. |+... ..++.|+
T Consensus 360 ~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~-i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~ 438 (549)
T 2a5y_B 360 LVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP-VKLWSCVIPVDICSNEEEQLDDEVADRLKRLS 438 (549)
T ss_dssp SSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE-HHHHHHHSCC-------CCCTHHHHHHHHHTT
T ss_pred HHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee-eeeeeeeccceeccCCCCCCHHHHHHHHHHHH
Confidence 567888999999999999999999 999999999988 5555554 44322 2589999
Q ss_pred ccCceeEe----CCEEEeeHHHHHHHHHHHhhcc
Q 001348 375 DKSLVRIS----RNKLEMHDLLQDMGREIVSQES 404 (1094)
Q Consensus 375 ~~sLi~~~----~~~~~mHdli~~~~~~i~~~e~ 404 (1094)
++||++.. ..+|.|||++|++|++++.+++
T Consensus 439 ~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 439 KRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp TBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 99999986 2479999999999999988765
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=9.4e-36 Score=398.87 Aligned_cols=304 Identities=20% Similarity=0.262 Sum_probs=239.3
Q ss_pred cCCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHH---HhccccceEEeeechhhhccCCChH
Q 001348 87 VSSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQ---ISRKFESKCFMANVREESEKGGGLV 163 (1094)
Q Consensus 87 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~---~~~~F~~~~~~~~~~~~~~~~~~~~ 163 (1094)
+|.....||||+.++++|.++|....+++++|+|+||||+||||||+++|++ ...+|...+|+.+++.... ....
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~ 196 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDK--SGLL 196 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCH--HHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCc--hHHH
Confidence 3667788999999999999999766678999999999999999999999985 4666887776655544211 2234
Q ss_pred HHHHHHHHhhhccCCcccCCC----c-hHHHHHHhcCC--eEEEEEecCCChHhHHHHhcCCCCCCCCceEEEEeCChhh
Q 001348 164 HLRDRLLSQILDESIRIETPY----I-PHYIRERLQCM--KVFIVLDDVNKFRQLEYLAGGLDRFGLGSRIIVTSRDKQV 236 (1094)
Q Consensus 164 ~l~~~ll~~l~~~~~~~~~~~----~-~~~l~~~L~~k--r~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v 236 (1094)
...+.++..+........... . ...++..|.++ |+||||||||+.++|+.+ ++||+||||||++.+
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~ 269 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSV 269 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTT
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHH
Confidence 445556666654332221111 1 44555566655 999999999999877653 679999999999999
Q ss_pred hhh-cCcCeEEEccC-CCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHHHHHhhhhcCCCHHHHHHHHHHh
Q 001348 237 LEK-YGVDHIYEVEE-LNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAIKVLASFFHRKSKLDWEIALQNL 314 (1094)
Q Consensus 237 ~~~-~~~~~~~~l~~-L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg~~L~~~~~~~w~~~l~~l 314 (1094)
+.. ++....++++. |+.+||++||...++.. .+.+.+++++|+++|+|+||||+++|++|+.+. ..|+..++++
T Consensus 270 ~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l 345 (1249)
T 3sfz_A 270 TDSVMGPKHVVPVESGLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQL 345 (1249)
T ss_dssp TTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHH
T ss_pred HHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC---hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHH
Confidence 854 45668899995 99999999999988532 334556789999999999999999999999876 5799999988
Q ss_pred hcCCC-----------ccHHHHHHHhhhcccHHhhhhhcccccccCCcCHHH--HHHHHhC-CCccccchhhhhccCcee
Q 001348 315 KQISG-----------PEILAVLKISYDELNWEAKNLFLDIACFFKGEDINF--VTLILDN-HYSVHYGLSVLVDKSLVR 380 (1094)
Q Consensus 315 ~~~~~-----------~~i~~~L~~sy~~L~~~~k~~fl~~a~f~~~~~~~~--~~~il~~-~~~~~~~l~~L~~~sLi~ 380 (1094)
..... ..+..+|.+||+.|++++|.||++||+||+++.++. +...|.. +..+...++.|+++|||+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~ 425 (1249)
T 3sfz_A 346 QNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLF 425 (1249)
T ss_dssp HSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCE
T ss_pred hhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceE
Confidence 65432 348999999999999999999999999999987654 4445554 556777899999999999
Q ss_pred Ee-CC---EEEeeHHHHHHHHHHHhhc
Q 001348 381 IS-RN---KLEMHDLLQDMGREIVSQE 403 (1094)
Q Consensus 381 ~~-~~---~~~mHdli~~~~~~i~~~e 403 (1094)
.. ++ +|.|||++|+++++.+.++
T Consensus 426 ~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 426 CNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp EEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred EecCCCceEEEecHHHHHHHHhhhhHH
Confidence 87 44 4999999999999986654
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=2.6e-35 Score=358.05 Aligned_cols=277 Identities=17% Similarity=0.181 Sum_probs=210.9
Q ss_pred CCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHH--HHhccccceEEeeechhhhccCCChHHHHHHH
Q 001348 92 EGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFN--QISRKFESKCFMANVREESEKGGGLVHLRDRL 169 (1094)
Q Consensus 92 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~--~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~l 169 (1094)
+..|||+.++++|.++|... +++++|+|+||||+||||||+++|+ +++.+|+..+||.++++. .+...+...+
T Consensus 128 k~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~----~d~~~IL~~L 202 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC----NSPETVLEML 202 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCS----SSHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCC----CCHHHHHHHH
Confidence 34599999999999999743 3589999999999999999999997 588999985554455432 3455666665
Q ss_pred HHhhhccC---C-ccc-------CCCc-hHHHHHHh---cCCeEEEEEecCCChHhHHHHhcCCCCCCCCceEEEEeCCh
Q 001348 170 LSQILDES---I-RIE-------TPYI-PHYIRERL---QCMKVFIVLDDVNKFRQLEYLAGGLDRFGLGSRIIVTSRDK 234 (1094)
Q Consensus 170 l~~l~~~~---~-~~~-------~~~~-~~~l~~~L---~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~ 234 (1094)
+..+.... . ... ..+. ...+++.| .+||+||||||||+.++|+.+. +||+||||||++
T Consensus 203 l~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~ 275 (1221)
T 1vt4_I 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFK 275 (1221)
T ss_dssp HHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCS
T ss_pred HHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccCh
Confidence 55432111 0 000 0011 34566655 6799999999999999998752 689999999999
Q ss_pred hhhhhcCcCeEEEcc------CCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHHHHHhhhhcCC--CHHH
Q 001348 235 QVLEKYGVDHIYEVE------ELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAIKVLASFFHRK--SKLD 306 (1094)
Q Consensus 235 ~v~~~~~~~~~~~l~------~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg~~L~~~--~~~~ 306 (1094)
.++..+.....|+|+ +|+.+||++||+++. +.. ..++..++ |+|+||||+++|+.|+.+ +.++
T Consensus 276 ~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~ee 346 (1221)
T 1vt4_I 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDN 346 (1221)
T ss_dssp HHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHH
T ss_pred HHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHH
Confidence 988654333456777 999999999999984 322 12233343 999999999999999987 7788
Q ss_pred HHHHHHHhhcCCCccHHHHHHHhhhcccHHh-hhhhcccccccCCcCHHH--HHHHHhC-CC-ccccchhhhhccCceeE
Q 001348 307 WEIALQNLKQISGPEILAVLKISYDELNWEA-KNLFLDIACFFKGEDINF--VTLILDN-HY-SVHYGLSVLVDKSLVRI 381 (1094)
Q Consensus 307 w~~~l~~l~~~~~~~i~~~L~~sy~~L~~~~-k~~fl~~a~f~~~~~~~~--~~~il~~-~~-~~~~~l~~L~~~sLi~~ 381 (1094)
|+.. ....+..+|+.||+.|++++ |+||++||+||+++.++. +..+|.. +. .+...++.|+++|||+.
T Consensus 347 W~~~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~ 419 (1221)
T 1vt4_I 347 WKHV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419 (1221)
T ss_dssp HHHC-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSB
T ss_pred HhcC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEE
Confidence 9753 35679999999999999999 999999999999887754 5555655 32 36678999999999998
Q ss_pred e--CCEEEeeHHHHHHH
Q 001348 382 S--RNKLEMHDLLQDMG 396 (1094)
Q Consensus 382 ~--~~~~~mHdli~~~~ 396 (1094)
. .++|+|||++++++
T Consensus 420 d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 420 QPKESTISIPSIYLELK 436 (1221)
T ss_dssp CSSSSEEBCCCHHHHHH
T ss_pred eCCCCEEEehHHHHHHh
Confidence 6 46899999998854
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=6.3e-33 Score=340.84 Aligned_cols=335 Identities=19% Similarity=0.255 Sum_probs=243.6
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHH--H-hccccc-eEEeeechhhhccCCChH
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQ--I-SRKFES-KCFMANVREESEKGGGLV 163 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~--~-~~~F~~-~~~~~~~~~~~~~~~~~~ 163 (1094)
|..+..||||+.++++|.++|....++.++|+|+||||+||||||+++|++ + +.+|+. ++|+. ++.. +..
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~-~~~~-----~~~ 193 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS-VGKQ-----DKS 193 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEE-EESC-----CHH
T ss_pred CCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEE-CCCC-----chH
Confidence 667788999999999999999765567899999999999999999999984 3 788964 55554 4332 112
Q ss_pred HHHHH---HHHhhhccCCc----ccCCCc-hHHHHHHhcC--CeEEEEEecCCChHhHHHHhcCCCCCCCCceEEEEeCC
Q 001348 164 HLRDR---LLSQILDESIR----IETPYI-PHYIRERLQC--MKVFIVLDDVNKFRQLEYLAGGLDRFGLGSRIIVTSRD 233 (1094)
Q Consensus 164 ~l~~~---ll~~l~~~~~~----~~~~~~-~~~l~~~L~~--kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~ 233 (1094)
.+... ++..+...... ...... ...+++.+.+ +++||||||||+..+++. +++|++||||||+
T Consensus 194 ~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~-------l~~~~~ilvTsR~ 266 (591)
T 1z6t_A 194 GLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA-------FDSQCQILLTTRD 266 (591)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHT-------TCSSCEEEEEESC
T ss_pred HHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHH-------hcCCCeEEEECCC
Confidence 22222 23333211111 111111 4556666655 789999999999877654 3678999999999
Q ss_pred hhhhhhcCcCeEEEc---cCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHHHHHhhhhcCCCHHHHHHH
Q 001348 234 KQVLEKYGVDHIYEV---EELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAIKVLASFFHRKSKLDWEIA 310 (1094)
Q Consensus 234 ~~v~~~~~~~~~~~l---~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg~~L~~~~~~~w~~~ 310 (1094)
+.++..++ ...|++ ++|+.+||++||...++.. .....+.+.+|+++|+|+||||+++|+.|+.+. .+|+..
T Consensus 267 ~~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~ 341 (591)
T 1z6t_A 267 KSVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYY 341 (591)
T ss_dssp GGGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHH
T ss_pred cHHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHH
Confidence 98877653 355666 4899999999999998642 223345789999999999999999999998764 479988
Q ss_pred HHHhhcCC-----------CccHHHHHHHhhhcccHHhhhhhcccccccCCcCHH--HHHHHHhC-CCccccchhhhhcc
Q 001348 311 LQNLKQIS-----------GPEILAVLKISYDELNWEAKNLFLDIACFFKGEDIN--FVTLILDN-HYSVHYGLSVLVDK 376 (1094)
Q Consensus 311 l~~l~~~~-----------~~~i~~~L~~sy~~L~~~~k~~fl~~a~f~~~~~~~--~~~~il~~-~~~~~~~l~~L~~~ 376 (1094)
++.+.... ...+..++..||+.|++..|.||+++||||++..++ .+..+|.. ...+...++.|+++
T Consensus 342 l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~ 421 (591)
T 1z6t_A 342 LKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNK 421 (591)
T ss_dssp HHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhC
Confidence 88876543 136899999999999999999999999999987664 45555544 34567779999999
Q ss_pred CceeEeC----CEEEeeHHHHHHHHHHHhhc------------c-------cCCCCcccccccchhhhhHhhccCCCCce
Q 001348 377 SLVRISR----NKLEMHDLLQDMGREIVSQE------------S-------EKEPGKRSRLWYHEDIYHVLKKNKGTDTI 433 (1094)
Q Consensus 377 sLi~~~~----~~~~mHdli~~~~~~i~~~e------------~-------~~~~~~~~rl~~~~di~~vl~~~~~~~~~ 433 (1094)
|||.... .+|.||+++++++++....+ . ...++.+.++|..+.+.|++..+... .+
T Consensus 422 ~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~a~~~~-~~ 500 (591)
T 1z6t_A 422 SLLFCDRNGKSFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSPDQEDCMYWYNFLAYHMASAKMHK-EL 500 (591)
T ss_dssp TSSEEEEETTEEEEECCHHHHHHHHHHTGGGHHHHHHHHHHHHTTTCCGGGCCTTSTTHHHHHHHHHHHHHHTTCHH-HH
T ss_pred cCeEEecCCCccEEEEcHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCCCEEeehhhHHHHHHhcCCHH-HH
Confidence 9998762 27999999999998772211 0 12234556677778888887766443 33
Q ss_pred eeeecccc
Q 001348 434 EGIFLDLS 441 (1094)
Q Consensus 434 ~~i~ldls 441 (1094)
..++.|++
T Consensus 501 ~~l~~~~~ 508 (591)
T 1z6t_A 501 CALMFSLD 508 (591)
T ss_dssp HHHHSCHH
T ss_pred HHHHhCHH
Confidence 44444443
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=8.2e-33 Score=341.70 Aligned_cols=324 Identities=15% Similarity=0.164 Sum_probs=278.8
Q ss_pred cCCccccCcccccEEEecCCCCCC------------------CCCCCC---ccccceeeccccccc-cccccCCCCCcCc
Q 001348 481 LPQGLQYLSDELRYLHWHGYPLKM------------------LPSNFT---PENLIELNLLYSRIE-QLWKGKKGCKSLR 538 (1094)
Q Consensus 481 l~~~l~~l~~~Lr~L~l~~~~l~~------------------lp~~~~---~~~L~~L~L~~n~i~-~l~~~~~~l~~L~ 538 (1094)
+|..+..++ +|++|++++|.++. +|..+. +.+|++|+|++|++. .++..+..+++|+
T Consensus 198 ip~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 198 VSKAVMRLT-KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp ECGGGGGCT-TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred CCHHHhccc-CCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 677777774 79999999999998 998765 899999999999876 5577778888888
Q ss_pred ccCCCCCCCCCeEEeccCCCCCc--ccCCcc---------CCccEEEeccCCCCcccc--ccccccccceeecccccccc
Q 001348 539 CFPNNIHFRSPISLNFSYCVNFK--EFPQIS---------GNVRELYLRGTPIEYVPS--SIDCLAKLEYLDLGHCTILE 605 (1094)
Q Consensus 539 ~~~~~~~~~~l~~L~Ls~~~~l~--~~p~~~---------~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~L~~~~~~~ 605 (1094)
.|++++|..+. .+|..+ .+|++|+|++|.++.+|. .++++++|++|++++|.+.+
T Consensus 277 ------------~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g 344 (636)
T 4eco_A 277 ------------LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG 344 (636)
T ss_dssp ------------EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEE
T ss_pred ------------EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCcc
Confidence 99999997454 466433 589999999999999999 89999999999999999988
Q ss_pred cchhhhhcCCcccEEeccCCcccCccchhhcccCc-cceeeccCcccccccchhhccC--CCcEEecCCCCCCCCCCccc
Q 001348 606 SISTSICKLKSLLKLCLDNCSKLESFPEILEKMGC-LEDIDLEGTAITELPSSIEYLG--GLTTLNLTGCSKLDNLPENL 682 (1094)
Q Consensus 606 ~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~-L~~L~L~~~~i~~lp~~l~~l~--~L~~L~L~~~~~~~~lp~~l 682 (1094)
.+| .++++++|++|++++|.+. .+|..+.++++ |++|++++|.++.+|..+..+. +|+.|++++|.+.+..|..+
T Consensus 345 ~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 422 (636)
T 4eco_A 345 KLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF 422 (636)
T ss_dssp ECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSS
T ss_pred chh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhh
Confidence 999 8999999999999999877 88999999999 9999999999999999887765 89999999999999999888
Q ss_pred c-------CCCcccEEecCCccCccCCccc-cCCCCCcEEEccCCCCCCCCCCCCC--------CCCCCEEeCCCCCCCC
Q 001348 683 G-------NLKSLKMLCANESAISQLPSSI-TNLNELQVVWCSGCRGLILPPSFSG--------LSYLTELDLSCCNLIE 746 (1094)
Q Consensus 683 ~-------~l~~L~~L~l~~~~i~~~p~~l-~~l~~L~~L~l~~~~~~~lp~~l~~--------l~~L~~L~Ls~n~l~~ 746 (1094)
. .+.+|+.|++++|.++.+|..+ ..+++|+.|++++|....+|..... +++|+.|+|++|+++.
T Consensus 423 ~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 502 (636)
T 4eco_A 423 DPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK 502 (636)
T ss_dssp CTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCB
T ss_pred cccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCc
Confidence 8 8889999999999999998765 4689999999999998888875443 2399999999999999
Q ss_pred CCcccc--CCCCCCeeecCCCCCcccchhhcCCCCCCEEEc------cCCCCCCCCCccccccccccccccccccccCCC
Q 001348 747 IPQDIG--CLSLLRSLDLRKNNFEYLPASMKHLSKLKSLDL------SCCNMLQSLPELPLQLKFLQAKDCKQLQSLPEI 818 (1094)
Q Consensus 747 lp~~l~--~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L------~~~~~l~~lp~~~~~L~~L~~~~c~~l~~~~~~ 818 (1094)
+|..+. .+++|+.|+|++|+++.+|..+..+++|+.|+| ++|.+.+.+|..+..+..|...++..+.. ..+
T Consensus 503 lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~i 581 (636)
T 4eco_A 503 LSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKV 581 (636)
T ss_dssp CCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBC
T ss_pred cChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-Ccc
Confidence 999887 999999999999999999999999999999999 45778889998776665555555555544 444
Q ss_pred Cc
Q 001348 819 PS 820 (1094)
Q Consensus 819 p~ 820 (1094)
|.
T Consensus 582 p~ 583 (636)
T 4eco_A 582 NE 583 (636)
T ss_dssp CS
T ss_pred CH
Confidence 44
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=9.6e-33 Score=349.06 Aligned_cols=150 Identities=22% Similarity=0.303 Sum_probs=72.2
Q ss_pred ccEEEeccCCCC-ccccccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccC
Q 001348 570 VRELYLRGTPIE-YVPSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEG 648 (1094)
Q Consensus 570 L~~L~L~~~~l~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~ 648 (1094)
|++|+|++|.+. .+|..++++++|++|+|++|.+.+.+|..++++++|++|++++|.+.+.+|..+..+++|++|++++
T Consensus 396 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 475 (768)
T 3rgz_A 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475 (768)
T ss_dssp CCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred ccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecC
Confidence 444444444444 3344444444444444444444444444444444444444444444444444444444444555444
Q ss_pred cccc-cccchhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCc-cCCccccCCCCCcEEEccCC
Q 001348 649 TAIT-ELPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAIS-QLPSSITNLNELQVVWCSGC 719 (1094)
Q Consensus 649 ~~i~-~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~-~~p~~l~~l~~L~~L~l~~~ 719 (1094)
|.++ .+|..+.++++|+.|++++|.+.+.+|.+++.+++|+.|++++|.++ .+|..+..+++|+.|++++|
T Consensus 476 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred CcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence 4444 34444444444555555444444444444444445555555444444 34444444444555544444
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.3e-32 Score=345.68 Aligned_cols=323 Identities=22% Similarity=0.278 Sum_probs=179.5
Q ss_pred cCCCCCceEEEEeCCCCCCccccccccccCCccccCcccccEEEecCCCCCCCCCCCCccccceeeccccccc-cccccC
Q 001348 453 FANMPNLRFLKFYMPKLFGISDMVCKLHLPQGLQYLSDELRYLHWHGYPLKMLPSNFTPENLIELNLLYSRIE-QLWKGK 531 (1094)
Q Consensus 453 f~~l~~Lr~L~l~~n~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~i~-~l~~~~ 531 (1094)
|.++++|++|++++|.+++ .+|..+..++ +|++|++++|.+....+...+.+|++|++++|++. .++..+
T Consensus 219 l~~l~~L~~L~Ls~n~l~~--------~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~ 289 (768)
T 3rgz_A 219 LGDCSALQHLDISGNKLSG--------DFSRAISTCT-ELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFL 289 (768)
T ss_dssp CTTCCSCCEEECCSSCCCS--------CHHHHTTTCS-SCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCS
T ss_pred cccCCCCCEEECcCCcCCC--------cccHHHhcCC-CCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHH
Confidence 5666666666666665543 2233333332 46666666665543222235556666666666655 333333
Q ss_pred CCC-CcCcccCCCCCCCCCeEEeccCCCCCcccCCccC---CccEEEeccCCCC-ccccc-cccccccceeecccccccc
Q 001348 532 KGC-KSLRCFPNNIHFRSPISLNFSYCVNFKEFPQISG---NVRELYLRGTPIE-YVPSS-IDCLAKLEYLDLGHCTILE 605 (1094)
Q Consensus 532 ~~l-~~L~~~~~~~~~~~l~~L~Ls~~~~l~~~p~~~~---~L~~L~L~~~~l~-~lp~~-i~~L~~L~~L~L~~~~~~~ 605 (1094)
... ++|+ .|++++|.....+|..+. +|++|+|++|.+. .+|.. ++.+++|++|++++|.+.+
T Consensus 290 ~~~~~~L~------------~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~ 357 (768)
T 3rgz_A 290 SGACDTLT------------GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 357 (768)
T ss_dssp CTTCTTCS------------EEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEE
T ss_pred HhhcCcCC------------EEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCc
Confidence 332 4444 566655543334443332 5556666665555 55544 5555566666666665555
Q ss_pred cchhhhhcCC-cccEEeccCCcccCccchhhcc--cCccceeeccCcccc-cccchhhccCCCcEEecCCCCCCCCCCcc
Q 001348 606 SISTSICKLK-SLLKLCLDNCSKLESFPEILEK--MGCLEDIDLEGTAIT-ELPSSIEYLGGLTTLNLTGCSKLDNLPEN 681 (1094)
Q Consensus 606 ~lp~~i~~l~-~L~~L~L~~~~~~~~~p~~l~~--l~~L~~L~L~~~~i~-~lp~~l~~l~~L~~L~L~~~~~~~~lp~~ 681 (1094)
.+|..+.+++ +|++|++++|.+.+.+|..+.. +++|++|++++|.++ .+|..++++++|+.|++++|.+.+.+|..
T Consensus 358 ~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 437 (768)
T 3rgz_A 358 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS 437 (768)
T ss_dssp CCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGG
T ss_pred cccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHH
Confidence 5555555554 5555555555555555555444 555566666665555 45555666666666666666555555666
Q ss_pred ccCCCcccEEecCCccCc-cCCccccCCCCCcEEEccCCCCC-CCCCCCCCCCCCCEEeCCCCCCC-CCCccccCCCCCC
Q 001348 682 LGNLKSLKMLCANESAIS-QLPSSITNLNELQVVWCSGCRGL-ILPPSFSGLSYLTELDLSCCNLI-EIPQDIGCLSLLR 758 (1094)
Q Consensus 682 l~~l~~L~~L~l~~~~i~-~~p~~l~~l~~L~~L~l~~~~~~-~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~ 758 (1094)
++++++|+.|++++|.+. .+|..+..+++|+.|++++|... .+|..+.++++|+.|+|++|.++ .+|.+++.+++|+
T Consensus 438 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 517 (768)
T 3rgz_A 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 517 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred HhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCC
Confidence 666666666666666555 44555556666666666665543 44555556666666666666655 3555556666666
Q ss_pred eeecCCCCCc-ccchhhcCCCCCCEEEccCCCCCCCCCc
Q 001348 759 SLDLRKNNFE-YLPASMKHLSKLKSLDLSCCNMLQSLPE 796 (1094)
Q Consensus 759 ~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~~~~l~~lp~ 796 (1094)
.|+|++|+++ .+|..+..+++|+.|+|++|++.+.+|.
T Consensus 518 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 518 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp EEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred EEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCCh
Confidence 6666666655 5555556666666666666665555554
No 8
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.1e-32 Score=340.86 Aligned_cols=370 Identities=16% Similarity=0.165 Sum_probs=301.0
Q ss_pred eeeecccccccccccCccccCCCCCceEEEE-eCCCCCCccccc------------------------------------
Q 001348 434 EGIFLDLSKIRDINLNPQAFANMPNLRFLKF-YMPKLFGISDMV------------------------------------ 476 (1094)
Q Consensus 434 ~~i~ldls~~~~~~l~~~~f~~l~~Lr~L~l-~~n~l~~~~~~~------------------------------------ 476 (1094)
+...+|++.+.....-|.+|+++++|++|+| ++|.+++.....
T Consensus 324 ~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l 403 (876)
T 4ecn_A 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDL 403 (876)
T ss_dssp CEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHH
T ss_pred CEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHH
Confidence 3445667766655555789999999999999 777654320000
Q ss_pred --------------------------------cccccCCccccCcccccEEEecCCCCCC------------------CC
Q 001348 477 --------------------------------CKLHLPQGLQYLSDELRYLHWHGYPLKM------------------LP 506 (1094)
Q Consensus 477 --------------------------------~~~~l~~~l~~l~~~Lr~L~l~~~~l~~------------------lp 506 (1094)
....+|..+..++ +|++|++++|.++. +|
T Consensus 404 ~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~-~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP 482 (876)
T 4ecn_A 404 LQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLT-KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482 (876)
T ss_dssp HHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCT-TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCC-CCCEEECcCCcCCCCcccccccccccccccccCC
Confidence 0001677777775 79999999999998 99
Q ss_pred CCC---Cccccceeeccccccc-cccccCCCCCcCcccCCCCCCCCCeEEeccCCCCCc--ccCCcc----------CCc
Q 001348 507 SNF---TPENLIELNLLYSRIE-QLWKGKKGCKSLRCFPNNIHFRSPISLNFSYCVNFK--EFPQIS----------GNV 570 (1094)
Q Consensus 507 ~~~---~~~~L~~L~L~~n~i~-~l~~~~~~l~~L~~~~~~~~~~~l~~L~Ls~~~~l~--~~p~~~----------~~L 570 (1094)
..+ .+.+|++|+|++|++. .++..+..+++|+ .|++++|..+. .+|..+ .+|
T Consensus 483 ~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~------------~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L 550 (876)
T 4ecn_A 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ------------SLNIACNRGISAAQLKADWTRLADDEDTGPKI 550 (876)
T ss_dssp SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC------------EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTC
T ss_pred hhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC------------EEECcCCCCcccccchHHHHhhhhcccccCCc
Confidence 886 4899999999999865 5666778888888 99999997454 355422 279
Q ss_pred cEEEeccCCCCcccc--ccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCc-cceeecc
Q 001348 571 RELYLRGTPIEYVPS--SIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGC-LEDIDLE 647 (1094)
Q Consensus 571 ~~L~L~~~~l~~lp~--~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~-L~~L~L~ 647 (1094)
++|+|++|.+..+|. .++++++|+.|+|++|.+. .+| .++++++|+.|+|++|.+. .+|..+.++++ |++|+|+
T Consensus 551 ~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls 627 (876)
T 4ecn_A 551 QIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFS 627 (876)
T ss_dssp CEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECC
T ss_pred cEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECc
Confidence 999999999999999 8999999999999999987 888 7999999999999999877 89999999999 9999999
Q ss_pred CcccccccchhhccCC--CcEEecCCCCCCCCCCcc---cc--CCCcccEEecCCccCccCCcccc-CCCCCcEEEccCC
Q 001348 648 GTAITELPSSIEYLGG--LTTLNLTGCSKLDNLPEN---LG--NLKSLKMLCANESAISQLPSSIT-NLNELQVVWCSGC 719 (1094)
Q Consensus 648 ~~~i~~lp~~l~~l~~--L~~L~L~~~~~~~~lp~~---l~--~l~~L~~L~l~~~~i~~~p~~l~-~l~~L~~L~l~~~ 719 (1094)
+|.++.+|..+..+.. |+.|+|++|.+.+.+|.. +. .+.+|+.|++++|.++.+|..+. .+++|+.|++++|
T Consensus 628 ~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N 707 (876)
T 4ecn_A 628 HNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN 707 (876)
T ss_dssp SSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSC
T ss_pred CCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCC
Confidence 9999999988877765 999999999988766643 33 34589999999999999988765 8899999999999
Q ss_pred CCCCCCCCCCCC--------CCCCEEeCCCCCCCCCCcccc--CCCCCCeeecCCCCCcccchhhcCCCCCCEEEccC--
Q 001348 720 RGLILPPSFSGL--------SYLTELDLSCCNLIEIPQDIG--CLSLLRSLDLRKNNFEYLPASMKHLSKLKSLDLSC-- 787 (1094)
Q Consensus 720 ~~~~lp~~l~~l--------~~L~~L~Ls~n~l~~lp~~l~--~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~-- 787 (1094)
....+|..+... ++|+.|+|++|+++.+|..+. .+++|+.|+|++|+++.+|..+..+++|+.|+|++
T Consensus 708 ~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 708 LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp CCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCB
T ss_pred cCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCC
Confidence 988888765443 399999999999999999987 89999999999999999999999999999999976
Q ss_pred ----CCCCCCCCccccccccccccccccccccCCCCc
Q 001348 788 ----CNMLQSLPELPLQLKFLQAKDCKQLQSLPEIPS 820 (1094)
Q Consensus 788 ----~~~l~~lp~~~~~L~~L~~~~c~~l~~~~~~p~ 820 (1094)
|.+.+.+|..+.++..|...++..+.. ..+|.
T Consensus 788 ~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~ 823 (876)
T 4ecn_A 788 DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDE 823 (876)
T ss_dssp CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred CcccccccccChHHHhcCCCCCEEECCCCCC-CccCH
Confidence 777888997666555555555544443 44443
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=1.4e-30 Score=321.27 Aligned_cols=373 Identities=22% Similarity=0.195 Sum_probs=268.3
Q ss_pred cccccccccccCccccCCCCCceEEEEeCCCCCCccccccccccCCccccCcccccEEEecCCCCCCC--CCCCCccccc
Q 001348 438 LDLSKIRDINLNPQAFANMPNLRFLKFYMPKLFGISDMVCKLHLPQGLQYLSDELRYLHWHGYPLKML--PSNFTPENLI 515 (1094)
Q Consensus 438 ldls~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~l--p~~~~~~~L~ 515 (1094)
++++.+....+.+.+|.++++|++|++++|.++++ -+..+..+ .+|++|++++|.++.+ |..+.+.+|+
T Consensus 86 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l--------~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 156 (606)
T 3t6q_A 86 LVLTANPLIFMAETALSGPKALKHLFFIQTGISSI--------DFIPLHNQ-KTLESLYLGSNHISSIKLPKGFPTEKLK 156 (606)
T ss_dssp EECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCG--------GGSCCTTC-TTCCEEECCSSCCCCCCCCTTCCCTTCC
T ss_pred eeCCCCcccccChhhhcccccccEeeccccCcccC--------CcchhccC-CcccEEECCCCcccccCcccccCCcccC
Confidence 44444444445555566666666666666555421 12233344 3688888888888776 5556678888
Q ss_pred eeeccccccccccc-cCCCCCcCc--c-----------cCCCCCCC----------------------------------
Q 001348 516 ELNLLYSRIEQLWK-GKKGCKSLR--C-----------FPNNIHFR---------------------------------- 547 (1094)
Q Consensus 516 ~L~L~~n~i~~l~~-~~~~l~~L~--~-----------~~~~~~~~---------------------------------- 547 (1094)
+|++++|.++.+.. .+..+.+|+ . .+......
T Consensus 157 ~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~ 236 (606)
T 3t6q_A 157 VLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFE 236 (606)
T ss_dssp EEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCT
T ss_pred EEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhc
Confidence 88888888876532 233333333 0 11111222
Q ss_pred ------------------CCeEEeccCCCCCcccCC-cc---CCccEEEeccCCCCccccccccccccceeecccccccc
Q 001348 548 ------------------SPISLNFSYCVNFKEFPQ-IS---GNVRELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILE 605 (1094)
Q Consensus 548 ------------------~l~~L~Ls~~~~l~~~p~-~~---~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~ 605 (1094)
+++.++++++. +..++. .+ .+|++|++++|.++.+|..++.+++|++|++++|.+.+
T Consensus 237 ~~~~~~i~~~~~~~l~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~ 315 (606)
T 3t6q_A 237 DMDDEDISPAVFEGLCEMSVESINLQKHY-FFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFEN 315 (606)
T ss_dssp TSCCCCCCGGGGGGGGGSEEEEEECTTCC-CSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSB
T ss_pred cccccccChhHhchhhcCceeEEEeecCc-cCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCc
Confidence 34455555553 223332 12 27888899888888888888888899999999888877
Q ss_pred cchhhhhcCCcccEEeccCCcccCccch-hhcccCccceeeccCcccccc---cchhhccCCCcEEecCCCCCCCCCCcc
Q 001348 606 SISTSICKLKSLLKLCLDNCSKLESFPE-ILEKMGCLEDIDLEGTAITEL---PSSIEYLGGLTTLNLTGCSKLDNLPEN 681 (1094)
Q Consensus 606 ~lp~~i~~l~~L~~L~L~~~~~~~~~p~-~l~~l~~L~~L~L~~~~i~~l---p~~l~~l~~L~~L~L~~~~~~~~lp~~ 681 (1094)
..|..+.++++|++|++++|...+.+|. .+.++++|++|++++|.++.+ |..+..+++|++|++++|.+.+..|..
T Consensus 316 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 395 (606)
T 3t6q_A 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA 395 (606)
T ss_dssp GGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTT
T ss_pred CchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHH
Confidence 7777888888999999988887766654 488888999999999888865 567888889999999988887777888
Q ss_pred ccCCCcccEEecCCccCccC-C-ccccCCCCCcEEEccCCCCCCC-CCCCCCCCCCCEEeCCCCCCCC--C--CccccCC
Q 001348 682 LGNLKSLKMLCANESAISQL-P-SSITNLNELQVVWCSGCRGLIL-PPSFSGLSYLTELDLSCCNLIE--I--PQDIGCL 754 (1094)
Q Consensus 682 l~~l~~L~~L~l~~~~i~~~-p-~~l~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~Ls~n~l~~--l--p~~l~~l 754 (1094)
+..+++|+.|++++|.+... | ..+..+++|+.|++++|..... |..+..+++|++|+|++|.+.. + +..+..+
T Consensus 396 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l 475 (606)
T 3t6q_A 396 FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL 475 (606)
T ss_dssp TTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGC
T ss_pred hcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccC
Confidence 88889999999998888754 3 3478888999999998886544 5567888999999999998875 2 2457888
Q ss_pred CCCCeeecCCCCCccc-chhhcCCCCCCEEEccCCCCCCCCCccccccccccccccccccccCCCCcc
Q 001348 755 SLLRSLDLRKNNFEYL-PASMKHLSKLKSLDLSCCNMLQSLPELPLQLKFLQAKDCKQLQSLPEIPSC 821 (1094)
Q Consensus 755 ~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~~~c~~l~~~~~~p~~ 821 (1094)
++|+.|+|++|+++.+ |..+..+++|+.|+|++|++.+..|..+.+++.| ..++..+......|..
T Consensus 476 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~ 542 (606)
T 3t6q_A 476 GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSL 542 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGG
T ss_pred CCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhh
Confidence 8999999999988866 5678888999999999998888888888888777 6666666655444443
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=2.2e-31 Score=328.92 Aligned_cols=308 Identities=19% Similarity=0.204 Sum_probs=265.7
Q ss_pred CCCCCCCCCCC-Cccccceeecccccccc------------------ccccCC--CCCcCcccCCCCCCCCCeEEeccCC
Q 001348 499 GYPLKMLPSNF-TPENLIELNLLYSRIEQ------------------LWKGKK--GCKSLRCFPNNIHFRSPISLNFSYC 557 (1094)
Q Consensus 499 ~~~l~~lp~~~-~~~~L~~L~L~~n~i~~------------------l~~~~~--~l~~L~~~~~~~~~~~l~~L~Ls~~ 557 (1094)
+|.++.+|..+ .+.+|++|+|++|.++. ++..+. .+++|+ +|++++|
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~------------~L~L~~n 259 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLT------------DVEVYNC 259 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCC------------EEEEECC
T ss_pred cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCC------------EEEecCC
Confidence 45666688766 58999999999999998 788777 888888 9999999
Q ss_pred CCCcccCCccC---CccEEEeccCC-CC--ccccccccc------cccceeecccccccccchh--hhhcCCcccEEecc
Q 001348 558 VNFKEFPQISG---NVRELYLRGTP-IE--YVPSSIDCL------AKLEYLDLGHCTILESIST--SICKLKSLLKLCLD 623 (1094)
Q Consensus 558 ~~l~~~p~~~~---~L~~L~L~~~~-l~--~lp~~i~~L------~~L~~L~L~~~~~~~~lp~--~i~~l~~L~~L~L~ 623 (1094)
.....+|..+. +|++|+|++|. ++ .+|..++.+ ++|++|+|++|.+. .+|. .++++++|++|+++
T Consensus 260 ~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~ 338 (636)
T 4eco_A 260 PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECL 338 (636)
T ss_dssp TTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECC
T ss_pred cCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCc
Confidence 98888887665 89999999998 88 489999887 99999999999987 8888 89999999999999
Q ss_pred CCcccCccchhhcccCccceeeccCcccccccchhhccCC-CcEEecCCCCCCCCCCccccCCC--cccEEecCCccCcc
Q 001348 624 NCSKLESFPEILEKMGCLEDIDLEGTAITELPSSIEYLGG-LTTLNLTGCSKLDNLPENLGNLK--SLKMLCANESAISQ 700 (1094)
Q Consensus 624 ~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~-L~~L~L~~~~~~~~lp~~l~~l~--~L~~L~l~~~~i~~ 700 (1094)
+|.+.+.+| .++++++|++|++++|.++.+|..+..+++ |++|++++|.+. .+|..+..+. +|+.|++++|.++.
T Consensus 339 ~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ 416 (636)
T 4eco_A 339 YNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGS 416 (636)
T ss_dssp SCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred CCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCC
Confidence 999988999 999999999999999999999999999999 999999999877 8898887765 99999999999985
Q ss_pred -CCcccc-------CCCCCcEEEccCCCCCCCCCCC-CCCCCCCEEeCCCCCCCCCCccccC-C-------CCCCeeecC
Q 001348 701 -LPSSIT-------NLNELQVVWCSGCRGLILPPSF-SGLSYLTELDLSCCNLIEIPQDIGC-L-------SLLRSLDLR 763 (1094)
Q Consensus 701 -~p~~l~-------~l~~L~~L~l~~~~~~~lp~~l-~~l~~L~~L~Ls~n~l~~lp~~l~~-l-------~~L~~L~L~ 763 (1094)
+|..+. .+++|+.|++++|....+|..+ ..+++|+.|+|++|.++.+|..+.. + ++|+.|+|+
T Consensus 417 ~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls 496 (636)
T 4eco_A 417 VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLR 496 (636)
T ss_dssp TTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECC
T ss_pred cchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECc
Confidence 567777 7889999999999988888764 4689999999999999998876443 2 299999999
Q ss_pred CCCCcccchhhc--CCCCCCEEEccCCCCCCCCCccccccccccccccc------cccccCCCCcch
Q 001348 764 KNNFEYLPASMK--HLSKLKSLDLSCCNMLQSLPELPLQLKFLQAKDCK------QLQSLPEIPSCL 822 (1094)
Q Consensus 764 ~n~l~~lp~~l~--~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~~~c~------~l~~~~~~p~~l 822 (1094)
+|+++.+|..+. .+++|+.|+|++|++.+ +|..+.++..|...++. .+.....+|..+
T Consensus 497 ~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l 562 (636)
T 4eco_A 497 FNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGI 562 (636)
T ss_dssp SSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTG
T ss_pred CCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHH
Confidence 999999999887 99999999999999887 88766555555555542 344455556443
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=1.3e-30 Score=327.33 Aligned_cols=370 Identities=16% Similarity=0.151 Sum_probs=282.5
Q ss_pred CCceEEEEeCCCCCCccccccccccCCccccCcccccEEEe-cCCCC---------------------------------
Q 001348 457 PNLRFLKFYMPKLFGISDMVCKLHLPQGLQYLSDELRYLHW-HGYPL--------------------------------- 502 (1094)
Q Consensus 457 ~~Lr~L~l~~n~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l-~~~~l--------------------------------- 502 (1094)
.++..|+|+++.+.+ .+|..+..++ .|++|++ ++|.+
T Consensus 323 ~~V~~L~Ls~~~L~G--------~ip~~l~~L~-~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~ 393 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKG--------RVPDAIGQLT-ELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLD 393 (876)
T ss_dssp SCEEEEECTTTCCEE--------EECGGGGGCT-TCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTC
T ss_pred CCEEEEECccCCCCC--------cCchHHhccc-cceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhc
Confidence 578999999998865 6788888886 7999999 66521
Q ss_pred --------------------------------------------CCCCCCC-Cccccceeecccccccc-----------
Q 001348 503 --------------------------------------------KMLPSNF-TPENLIELNLLYSRIEQ----------- 526 (1094)
Q Consensus 503 --------------------------------------------~~lp~~~-~~~~L~~L~L~~n~i~~----------- 526 (1094)
+.+|..+ .+.+|++|+|++|+++.
T Consensus 394 ~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s 473 (876)
T 4ecn_A 394 YDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDAN 473 (876)
T ss_dssp CCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTT
T ss_pred cCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccc
Confidence 1155544 47788888888888887
Q ss_pred -------ccccCC--CCCcCcccCCCCCCCCCeEEeccCCCCCcccCCccC---CccEEEeccCC-CCc--ccccccccc
Q 001348 527 -------LWKGKK--GCKSLRCFPNNIHFRSPISLNFSYCVNFKEFPQISG---NVRELYLRGTP-IEY--VPSSIDCLA 591 (1094)
Q Consensus 527 -------l~~~~~--~l~~L~~~~~~~~~~~l~~L~Ls~~~~l~~~p~~~~---~L~~L~L~~~~-l~~--lp~~i~~L~ 591 (1094)
++..+. .+++|+ .|+|++|.....+|..+. +|++|+|++|. ++. +|..++.++
T Consensus 474 ~n~~~g~iP~~l~f~~L~~L~------------~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~ 541 (876)
T 4ecn_A 474 SDYAKQYENEELSWSNLKDLT------------DVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLA 541 (876)
T ss_dssp SHHHHHHTTSCCCGGGCTTCC------------EEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHH
T ss_pred cccccccCChhhhhccCCCCC------------EEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhh
Confidence 666655 666666 999999887888886554 88999999987 774 888777766
Q ss_pred -------ccceeecccccccccchh--hhhcCCcccEEeccCCcccCccchhhcccCccceeeccCcccccccchhhccC
Q 001348 592 -------KLEYLDLGHCTILESIST--SICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEGTAITELPSSIEYLG 662 (1094)
Q Consensus 592 -------~L~~L~L~~~~~~~~lp~--~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~ 662 (1094)
+|++|+|++|.+. .+|. .++++++|++|+|++|.+. .+| .++++++|+.|+|++|.++.+|..+..++
T Consensus 542 ~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~ 618 (876)
T 4ecn_A 542 DDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFT 618 (876)
T ss_dssp HCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCCTTSCEEC
T ss_pred hcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccccchHHHhhcc
Confidence 8999999999877 7887 8888999999999998876 788 88889999999999999999998899998
Q ss_pred C-CcEEecCCCCCCCCCCccccCCCc--ccEEecCCccCccCCcc----cc--CCCCCcEEEccCCCCCCCCCCCC-CCC
Q 001348 663 G-LTTLNLTGCSKLDNLPENLGNLKS--LKMLCANESAISQLPSS----IT--NLNELQVVWCSGCRGLILPPSFS-GLS 732 (1094)
Q Consensus 663 ~-L~~L~L~~~~~~~~lp~~l~~l~~--L~~L~l~~~~i~~~p~~----l~--~l~~L~~L~l~~~~~~~lp~~l~-~l~ 732 (1094)
+ |+.|+|++|.+. .+|..+..+.. |+.|++++|.+...++. +. .+++|+.|++++|....+|..+. .++
T Consensus 619 ~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~ 697 (876)
T 4ecn_A 619 DQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGS 697 (876)
T ss_dssp TTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTC
T ss_pred ccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCC
Confidence 8 999999998866 78888777654 99999999988754332 22 44589999999999888887654 789
Q ss_pred CCCEEeCCCCCCCCCCccccCC--------CCCCeeecCCCCCcccchhhc--CCCCCCEEEccCCCCCCCCCccccccc
Q 001348 733 YLTELDLSCCNLIEIPQDIGCL--------SLLRSLDLRKNNFEYLPASMK--HLSKLKSLDLSCCNMLQSLPELPLQLK 802 (1094)
Q Consensus 733 ~L~~L~Ls~n~l~~lp~~l~~l--------~~L~~L~L~~n~l~~lp~~l~--~l~~L~~L~L~~~~~l~~lp~~~~~L~ 802 (1094)
+|+.|+|++|.++.+|..+... ++|+.|+|++|+++.+|..+. .+++|+.|+|++|++.+ +|..+.++.
T Consensus 698 ~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~ 776 (876)
T 4ecn_A 698 PISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSS 776 (876)
T ss_dssp CCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCT
T ss_pred CCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCC
Confidence 9999999999999988875443 389999999999999999887 99999999999999887 786555555
Q ss_pred ccccccccc------ccccCCCCcch------hhhcccccccccCCCccccccCceeeccCcc
Q 001348 803 FLQAKDCKQ------LQSLPEIPSCL------EMVDVCKLETLYELPQSFLEFGTEFMFTNCL 853 (1094)
Q Consensus 803 ~L~~~~c~~------l~~~~~~p~~l------~~l~~~~l~~L~~l~~~~~~~~~~~~~~nc~ 853 (1094)
.|...++.. +.....+|..+ +.|+++++.- ..+|..+.+.+..+.+.+|+
T Consensus 777 ~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 777 QLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLTPQLYILDIADNP 838 (876)
T ss_dssp TCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCSSSCEEECCSCT
T ss_pred CCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhcCCCCEEECCCCC
Confidence 555444433 34444555433 3334444322 44554444444444555444
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=6.6e-30 Score=315.38 Aligned_cols=345 Identities=20% Similarity=0.200 Sum_probs=244.1
Q ss_pred eecccccccccccCccccCCCCCceEEEEeCCCCCCccccccccccCCccccCcccccEEEecCCCCCCCC-CCC-Cccc
Q 001348 436 IFLDLSKIRDINLNPQAFANMPNLRFLKFYMPKLFGISDMVCKLHLPQGLQYLSDELRYLHWHGYPLKMLP-SNF-TPEN 513 (1094)
Q Consensus 436 i~ldls~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp-~~~-~~~~ 513 (1094)
..+|++.+....+.+.+|.++++|++|++++|.+.+ ..|..+..++ +|++|++++|.++.++ ..+ .+.+
T Consensus 36 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~--------~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~ 106 (606)
T 3t6q_A 36 ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW--------IHEDTFQSQH-RLDTLVLTANPLIFMAETALSGPKA 106 (606)
T ss_dssp CEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE--------ECTTTTTTCT-TCCEEECTTCCCSEECTTTTSSCTT
T ss_pred cEEEccCCccCcCChhHhccCccceEEECCCCccce--------eChhhccCcc-ccCeeeCCCCcccccChhhhccccc
Confidence 467788888888888999999999999999998753 3355566654 7999999999998774 344 5889
Q ss_pred cceeeccccccccc-cccCCCCCcCcccCCCCCCCCCeEEeccCCCCCc-ccCCccC--CccEEEeccCCCCcc-ccccc
Q 001348 514 LIELNLLYSRIEQL-WKGKKGCKSLRCFPNNIHFRSPISLNFSYCVNFK-EFPQISG--NVRELYLRGTPIEYV-PSSID 588 (1094)
Q Consensus 514 L~~L~L~~n~i~~l-~~~~~~l~~L~~~~~~~~~~~l~~L~Ls~~~~l~-~~p~~~~--~L~~L~L~~~~l~~l-p~~i~ 588 (1094)
|++|++++|.++.+ +..+..+++|+ +|++++|.... ..|...+ +|++|+|++|.+..+ |..++
T Consensus 107 L~~L~L~~n~i~~l~~~~~~~l~~L~------------~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 174 (606)
T 3t6q_A 107 LKHLFFIQTGISSIDFIPLHNQKTLE------------SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMS 174 (606)
T ss_dssp CCEEECTTSCCSCGGGSCCTTCTTCC------------EEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHH
T ss_pred ccEeeccccCcccCCcchhccCCccc------------EEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhh
Confidence 99999999999887 45667777777 77777775332 2243333 777777777777766 44566
Q ss_pred cccccc--eeecccccccccchhhhhcCC---------------------------------------------------
Q 001348 589 CLAKLE--YLDLGHCTILESISTSICKLK--------------------------------------------------- 615 (1094)
Q Consensus 589 ~L~~L~--~L~L~~~~~~~~lp~~i~~l~--------------------------------------------------- 615 (1094)
.+++|+ .|++++|.+.+..|..+. ..
T Consensus 175 ~l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~ 253 (606)
T 3t6q_A 175 SLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE 253 (606)
T ss_dssp TTTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGG
T ss_pred hhcccceeEEecCCCccCccChhHhh-hccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhc
Confidence 777777 677777766655554332 12
Q ss_pred -cccEEeccCCcccCccchhhcccCccceeeccCcccccccchhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecC
Q 001348 616 -SLLKLCLDNCSKLESFPEILEKMGCLEDIDLEGTAITELPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCAN 694 (1094)
Q Consensus 616 -~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~ 694 (1094)
+|+.|++++|.+.+..+..+.++++|++|++++|.++.+|..+..+++|++|++++|.+.+..|..+.++++|+.|+++
T Consensus 254 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 254 MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp SEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred CceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 5666666666666655666777777777777777777777777777777777777777666666677777777777777
Q ss_pred CccCc-cCCc-cccCCCCCcEEEccCCCCCCC---CCCCCCCCCCCEEeCCCCCCCCC-CccccCCCCCCeeecCCCCCc
Q 001348 695 ESAIS-QLPS-SITNLNELQVVWCSGCRGLIL---PPSFSGLSYLTELDLSCCNLIEI-PQDIGCLSLLRSLDLRKNNFE 768 (1094)
Q Consensus 695 ~~~i~-~~p~-~l~~l~~L~~L~l~~~~~~~l---p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~n~l~ 768 (1094)
+|.+. .+|. .+..+++|+.|++++|..... +..+..+++|++|++++|.+..+ |..+..+++|+.|++++|.++
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 77765 4443 367777777777777775544 55677777777777777777664 455677777777777777776
Q ss_pred cc-c-hhhcCCCCCCEEEccCCCCCCCCCccccccc
Q 001348 769 YL-P-ASMKHLSKLKSLDLSCCNMLQSLPELPLQLK 802 (1094)
Q Consensus 769 ~l-p-~~l~~l~~L~~L~L~~~~~l~~lp~~~~~L~ 802 (1094)
.. | ..+..+++|+.|+|++|.+.+..|..+..+.
T Consensus 414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 449 (606)
T 3t6q_A 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP 449 (606)
T ss_dssp CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCT
T ss_pred CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCC
Confidence 44 2 2367777777777777777766665543333
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=2.4e-29 Score=306.52 Aligned_cols=346 Identities=19% Similarity=0.180 Sum_probs=257.9
Q ss_pred eecccccccccccCccccCCCCCceEEEEeCCCCCCccccccccccCCccccCcccccEEEecCCCCCCCCCC-C-Cccc
Q 001348 436 IFLDLSKIRDINLNPQAFANMPNLRFLKFYMPKLFGISDMVCKLHLPQGLQYLSDELRYLHWHGYPLKMLPSN-F-TPEN 513 (1094)
Q Consensus 436 i~ldls~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~~~~ 513 (1094)
..+|++.+....+.+.+|.++++|++|++++|.+.+ ..|..+..+ .+|++|++++|.++.+|.. + .+.+
T Consensus 29 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~--------~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~ 99 (549)
T 2z81_A 29 KSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT--------IEGDAFYSL-GSLEHLDLSDNHLSSLSSSWFGPLSS 99 (549)
T ss_dssp CEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE--------ECTTTTTTC-TTCCEEECTTSCCCSCCHHHHTTCTT
T ss_pred cEEECcCCccCccChhhhhcCCcccEEECCCCCcCc--------cChhhcccc-ccCCEEECCCCccCccCHHHhccCCC
Confidence 356777777777788899999999999999998754 223455555 4799999999999998865 3 5889
Q ss_pred cceeeccccccccc--cccCCCCCcCcccCCCCCCCCCeEEeccCCCCCcccCC-ccC---CccEEEeccCCCCc-cccc
Q 001348 514 LIELNLLYSRIEQL--WKGKKGCKSLRCFPNNIHFRSPISLNFSYCVNFKEFPQ-ISG---NVRELYLRGTPIEY-VPSS 586 (1094)
Q Consensus 514 L~~L~L~~n~i~~l--~~~~~~l~~L~~~~~~~~~~~l~~L~Ls~~~~l~~~p~-~~~---~L~~L~L~~~~l~~-lp~~ 586 (1094)
|++|++++|.++.+ +..+..+++|+ .|++++|..+..+|. .+. +|++|++++|.+.. +|..
T Consensus 100 L~~L~Ls~n~l~~~~~~~~~~~l~~L~------------~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 167 (549)
T 2z81_A 100 LKYLNLMGNPYQTLGVTSLFPNLTNLQ------------TLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS 167 (549)
T ss_dssp CCEEECTTCCCSSSCSSCSCTTCTTCC------------EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred CcEEECCCCcccccchhhhhhccCCcc------------EEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh
Confidence 99999999999854 45677777777 888887776666652 222 67788888877775 4666
Q ss_pred cccccccceeecccccccccchhh-hhcCCcccEEeccCCcccCcc----------------------------------
Q 001348 587 IDCLAKLEYLDLGHCTILESISTS-ICKLKSLLKLCLDNCSKLESF---------------------------------- 631 (1094)
Q Consensus 587 i~~L~~L~~L~L~~~~~~~~lp~~-i~~l~~L~~L~L~~~~~~~~~---------------------------------- 631 (1094)
++.+++|+.|++++|... .+|.. +..+++|++|++++|.+.+..
T Consensus 168 l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 246 (549)
T 2z81_A 168 LKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL 246 (549)
T ss_dssp TTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGG
T ss_pred hhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHH
Confidence 777666666666666543 23332 234566666666655543310
Q ss_pred --------------------------------------------------------chhhcccCccceeeccCccccccc
Q 001348 632 --------------------------------------------------------PEILEKMGCLEDIDLEGTAITELP 655 (1094)
Q Consensus 632 --------------------------------------------------------p~~l~~l~~L~~L~L~~~~i~~lp 655 (1094)
+..+..+++|+.|++++|.++.+|
T Consensus 247 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip 326 (549)
T 2z81_A 247 LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVP 326 (549)
T ss_dssp GGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCC
T ss_pred hhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCC
Confidence 000112346777778888888888
Q ss_pred chh-hccCCCcEEecCCCCCCCCCCc---cccCCCcccEEecCCccCccCC---ccccCCCCCcEEEccCCCCCCCCCCC
Q 001348 656 SSI-EYLGGLTTLNLTGCSKLDNLPE---NLGNLKSLKMLCANESAISQLP---SSITNLNELQVVWCSGCRGLILPPSF 728 (1094)
Q Consensus 656 ~~l-~~l~~L~~L~L~~~~~~~~lp~---~l~~l~~L~~L~l~~~~i~~~p---~~l~~l~~L~~L~l~~~~~~~lp~~l 728 (1094)
..+ ..+++|++|++++|.+.+.+|. .++.+++|+.|++++|.++.++ ..+..+++|+.|++++|....+|..+
T Consensus 327 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~ 406 (549)
T 2z81_A 327 CSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSC 406 (549)
T ss_dssp HHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCC
T ss_pred HHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhh
Confidence 876 5799999999999988776643 4788899999999999998875 35888999999999999988899989
Q ss_pred CCCCCCCEEeCCCCCCCCCCccccCCCCCCeeecCCCCCcccchhhcCCCCCCEEEccCCCCCCCCCcc--ccccccccc
Q 001348 729 SGLSYLTELDLSCCNLIEIPQDIGCLSLLRSLDLRKNNFEYLPASMKHLSKLKSLDLSCCNMLQSLPEL--PLQLKFLQA 806 (1094)
Q Consensus 729 ~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~--~~~L~~L~~ 806 (1094)
..+++|++|+|++|.++.+|..+ .++|+.|+|++|+++.++ ..+++|++|+|++|++. .+|.. +++|+.|++
T Consensus 407 ~~~~~L~~L~Ls~N~l~~l~~~~--~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~-~ip~~~~l~~L~~L~L 480 (549)
T 2z81_A 407 QWPEKMRFLNLSSTGIRVVKTCI--PQTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLK-TLPDASLFPVLLVMKI 480 (549)
T ss_dssp CCCTTCCEEECTTSCCSCCCTTS--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCS-SCCCGGGCTTCCEEEC
T ss_pred cccccccEEECCCCCcccccchh--cCCceEEECCCCChhhhc---ccCChhcEEECCCCccC-cCCCcccCccCCEEec
Confidence 99999999999999999887654 368999999999998776 47899999999999776 77753 344555555
Q ss_pred ccc
Q 001348 807 KDC 809 (1094)
Q Consensus 807 ~~c 809 (1094)
.++
T Consensus 481 s~N 483 (549)
T 2z81_A 481 SRN 483 (549)
T ss_dssp CSS
T ss_pred CCC
Confidence 443
No 14
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=4.1e-29 Score=302.28 Aligned_cols=331 Identities=16% Similarity=0.162 Sum_probs=203.0
Q ss_pred ecccccccccccCccccCCCCCceEEEEeCCCCCCccccccccccCCccccCcccccEEEecCCCCCCCCCCCCccccce
Q 001348 437 FLDLSKIRDINLNPQAFANMPNLRFLKFYMPKLFGISDMVCKLHLPQGLQYLSDELRYLHWHGYPLKMLPSNFTPENLIE 516 (1094)
Q Consensus 437 ~ldls~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~ 516 (1094)
.+|++.+....+.+.+|.++++|++|++++|.+++ ..|..+..++ +|++|++++|.++.+|.. .+.+|++
T Consensus 25 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~--------~~~~~~~~l~-~L~~L~Ls~N~l~~lp~~-~l~~L~~ 94 (520)
T 2z7x_B 25 ILNISQNYISELWTSDILSLSKLRILIISHNRIQY--------LDISVFKFNQ-ELEYLDLSHNKLVKISCH-PTVNLKH 94 (520)
T ss_dssp EEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCE--------EEGGGGTTCT-TCCEEECCSSCCCEEECC-CCCCCSE
T ss_pred EEECCCCcccccChhhccccccccEEecCCCccCC--------cChHHhhccc-CCCEEecCCCceeecCcc-ccCCccE
Confidence 56777777777888899999999999999998864 2345555554 799999999999999988 8899999
Q ss_pred eeccccccccc--cccCCCCCcCcccCCCCCCCCCeEEeccCCCCCcccCCccCCc--cEEEeccCCC--C-cccccc--
Q 001348 517 LNLLYSRIEQL--WKGKKGCKSLRCFPNNIHFRSPISLNFSYCVNFKEFPQISGNV--RELYLRGTPI--E-YVPSSI-- 587 (1094)
Q Consensus 517 L~L~~n~i~~l--~~~~~~l~~L~~~~~~~~~~~l~~L~Ls~~~~l~~~p~~~~~L--~~L~L~~~~l--~-~lp~~i-- 587 (1094)
|++++|.++.+ +..+..+++|+ .|++++|..-........+| ++|++++|.+ . ..|..+
T Consensus 95 L~L~~N~l~~~~~p~~~~~l~~L~------------~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~ 162 (520)
T 2z7x_B 95 LDLSFNAFDALPICKEFGNMSQLK------------FLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQD 162 (520)
T ss_dssp EECCSSCCSSCCCCGGGGGCTTCC------------EEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTT
T ss_pred EeccCCccccccchhhhccCCcce------------EEEecCcccchhhccccccceeeEEEeecccccccccccccccc
Confidence 99999999864 46777888888 66666664322111112244 6666666655 1 223322
Q ss_pred ------------------------ccccccceeeccccc-------ccccchhhhhc-----------------------
Q 001348 588 ------------------------DCLAKLEYLDLGHCT-------ILESISTSICK----------------------- 613 (1094)
Q Consensus 588 ------------------------~~L~~L~~L~L~~~~-------~~~~lp~~i~~----------------------- 613 (1094)
..+++|+.|++++|. +.+.+| .++.
T Consensus 163 l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~ 241 (520)
T 2z7x_B 163 FNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRIL 241 (520)
T ss_dssp CCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHH
T ss_pred cccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHH
Confidence 235555555555553 222222 1222
Q ss_pred ----CCcccEEeccCCcccCccchhh-----cccCccceeeccCccccccc-chhhcc---CCCcEEecCCCCCCCCCCc
Q 001348 614 ----LKSLLKLCLDNCSKLESFPEIL-----EKMGCLEDIDLEGTAITELP-SSIEYL---GGLTTLNLTGCSKLDNLPE 680 (1094)
Q Consensus 614 ----l~~L~~L~L~~~~~~~~~p~~l-----~~l~~L~~L~L~~~~i~~lp-~~l~~l---~~L~~L~L~~~~~~~~lp~ 680 (1094)
+++|++|++++|.+.+.+|..+ +++++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+....
T Consensus 242 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~-- 318 (520)
T 2z7x_B 242 QLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHML-- 318 (520)
T ss_dssp HHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--
T ss_pred HHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccccc--
Confidence 3467777888877777888877 7888888888888877 666 344333 45555555555433211
Q ss_pred cccCCCcccEEecCCccCcc-CCccccCCCCCcEEEccCCCCCC---CCCCCCCCCCCCEEeCCCCCCCC-CCcc-ccCC
Q 001348 681 NLGNLKSLKMLCANESAISQ-LPSSITNLNELQVVWCSGCRGLI---LPPSFSGLSYLTELDLSCCNLIE-IPQD-IGCL 754 (1094)
Q Consensus 681 ~l~~l~~L~~L~l~~~~i~~-~p~~l~~l~~L~~L~l~~~~~~~---lp~~l~~l~~L~~L~Ls~n~l~~-lp~~-l~~l 754 (1094)
....+++|+.|++++|.++. +|..+..+++|+.|++++|.... +|..+..+++|++|+|++|.++. +|.. +..+
T Consensus 319 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l 398 (520)
T 2z7x_B 319 CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT 398 (520)
T ss_dssp CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCC
T ss_pred chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccC
Confidence 11345555555555555554 45555555555555555555442 23345555555555555555554 5543 4455
Q ss_pred CCCCeeecCCCCCc-ccchhhcCCCCCCEEEccCCCCCCCCCc
Q 001348 755 SLLRSLDLRKNNFE-YLPASMKHLSKLKSLDLSCCNMLQSLPE 796 (1094)
Q Consensus 755 ~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~~~~l~~lp~ 796 (1094)
++|+.|+|++|.++ .+|..+. ++|+.|+|++|.+. .+|.
T Consensus 399 ~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~ 438 (520)
T 2z7x_B 399 KSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPK 438 (520)
T ss_dssp TTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCG
T ss_pred ccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccch
Confidence 55555555555554 3333221 45555555555544 4444
No 15
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=5.5e-29 Score=307.11 Aligned_cols=348 Identities=19% Similarity=0.173 Sum_probs=182.7
Q ss_pred ecccccccccccCccccCCCCCceEEEEeCCCCCCccccccccccCCccccCcccccEEEecCCCCCCC-CCCC-Ccccc
Q 001348 437 FLDLSKIRDINLNPQAFANMPNLRFLKFYMPKLFGISDMVCKLHLPQGLQYLSDELRYLHWHGYPLKML-PSNF-TPENL 514 (1094)
Q Consensus 437 ~ldls~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~l-p~~~-~~~~L 514 (1094)
.+|++.+....+.+.+|.++++|++|++++|.+++ ..|..+..+ ++|++|++++|.++.+ |..+ .+.+|
T Consensus 36 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--------i~~~~~~~l-~~L~~L~Ls~n~l~~~~p~~~~~l~~L 106 (606)
T 3vq2_A 36 NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET--------IEDKAWHGL-HHLSNLILTGNPIQSFSPGSFSGLTSL 106 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE--------ECTTTTTTC-TTCCEEECTTCCCCCCCTTSSTTCTTC
T ss_pred EEECCCCCcCEeChhhccCCccCcEEeCCCCcccc--------cCHHHhhch-hhcCEeECCCCcccccChhhcCCcccC
Confidence 35566665566666667777777777777666542 112333333 3567777777766666 3444 46667
Q ss_pred ceeecccccccccc-ccCCCCCcCccc------------CCCC-CCCCCeEEeccCCCCCcccCCccC---C----ccEE
Q 001348 515 IELNLLYSRIEQLW-KGKKGCKSLRCF------------PNNI-HFRSPISLNFSYCVNFKEFPQISG---N----VREL 573 (1094)
Q Consensus 515 ~~L~L~~n~i~~l~-~~~~~l~~L~~~------------~~~~-~~~~l~~L~Ls~~~~l~~~p~~~~---~----L~~L 573 (1094)
++|++++|.++.+. ..+..+++|+.+ |..+ .+.+|+.|++++|..-...|..+. + +.+|
T Consensus 107 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L 186 (606)
T 3vq2_A 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL 186 (606)
T ss_dssp CEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEE
T ss_pred CEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcccccccee
Confidence 77777766666554 345555555500 1100 122333555555533222222222 1 2355
Q ss_pred EeccCCCCccccccccccccceeeccccccc-ccchhhh-----------------------------------------
Q 001348 574 YLRGTPIEYVPSSIDCLAKLEYLDLGHCTIL-ESISTSI----------------------------------------- 611 (1094)
Q Consensus 574 ~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~-~~lp~~i----------------------------------------- 611 (1094)
++++|.+..+|.......+|+.|++++|.+. +..|..+
T Consensus 187 ~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l 266 (606)
T 3vq2_A 187 DMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266 (606)
T ss_dssp ECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEE
T ss_pred eccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhhe
Confidence 5555555555554444446666666665443 1222222
Q ss_pred ---------------hcCCcccEEeccCCcccCccchhhcccCccceeeccCcccccccchhhccCCCcEEecCCCCCCC
Q 001348 612 ---------------CKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEGTAITELPSSIEYLGGLTTLNLTGCSKLD 676 (1094)
Q Consensus 612 ---------------~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~ 676 (1094)
..+++|+.|++++|.. ..+| .+..+++|++|++++|.+..+| .+ .+++|+.|++++|...+
T Consensus 267 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~l~-~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~ 342 (606)
T 3vq2_A 267 RLTYTNDFSDDIVKFHCLANVSAMSLAGVSI-KYLE-DVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSI 342 (606)
T ss_dssp EECCCTTCCGGGGSCGGGTTCSEEEEESCCC-CCCC-CCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCE
T ss_pred eccccccccccccccccCCCCCEEEecCccc-hhhh-hccccccCCEEEcccccCcccc-cC-CCCccceeeccCCcCcc
Confidence 2233344444444332 2233 3444444555555555544444 22 44455555555443332
Q ss_pred CCCccccCCCcccEEecCCccCccC---CccccCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeCCCCCCCCCCc--cc
Q 001348 677 NLPENLGNLKSLKMLCANESAISQL---PSSITNLNELQVVWCSGCRGLILPPSFSGLSYLTELDLSCCNLIEIPQ--DI 751 (1094)
Q Consensus 677 ~lp~~l~~l~~L~~L~l~~~~i~~~---p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~--~l 751 (1094)
.. .+..+++|+.|++++|.++.+ |..+..+++|+.|++++|....+|..+..+++|+.|++++|.+..++. .+
T Consensus 343 ~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 420 (606)
T 3vq2_A 343 SF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAF 420 (606)
T ss_dssp EC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTT
T ss_pred ch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhh
Confidence 22 344555666666666655543 555666666666666666655555666666666666666666665432 45
Q ss_pred cCCCCCCeeecCCCCCcc-cchhhcCCCCCCEEEccCCCCCCC-CCcccc
Q 001348 752 GCLSLLRSLDLRKNNFEY-LPASMKHLSKLKSLDLSCCNMLQS-LPELPL 799 (1094)
Q Consensus 752 ~~l~~L~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~~~~l~~-lp~~~~ 799 (1094)
..+++|+.|++++|.++. .|..+..+++|++|+|++|.+.+. +|..+.
T Consensus 421 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 470 (606)
T 3vq2_A 421 LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA 470 (606)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred hccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhc
Confidence 666666666666666663 444566666666666666665552 454443
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=5.6e-29 Score=304.75 Aligned_cols=149 Identities=23% Similarity=0.237 Sum_probs=91.4
Q ss_pred ecccccccccccCccccCCCCCceEEEEeCCCCCCccccccccccCCccccCcccccEEEecCCCCCCCCC-CC-Ccccc
Q 001348 437 FLDLSKIRDINLNPQAFANMPNLRFLKFYMPKLFGISDMVCKLHLPQGLQYLSDELRYLHWHGYPLKMLPS-NF-TPENL 514 (1094)
Q Consensus 437 ~ldls~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L 514 (1094)
.+|++.+....+.+.+|.++++|++|++++|.+.++ .+..+..+ .+|++|++++|.++.+|. .| .+.+|
T Consensus 32 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i--------~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (570)
T 2z63_A 32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI--------EDGAYQSL-SHLSTLILTGNPIQSLALGAFSGLSSL 102 (570)
T ss_dssp EEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEE--------CTTTTTTC-TTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred EEEccCCccCccChhHhhCCCCceEEECCCCcCCcc--------CcccccCc-hhCCEEeCcCCcCCccCHhhhcCcccc
Confidence 466777766677777888888888888888776431 12333444 468888888888777763 33 47778
Q ss_pred ceeeccccccccccc-cCCCCCcCcccCCCCCCCCCeEEeccCCCCCc-ccCCccC---CccEEEeccCCCCccc-cccc
Q 001348 515 IELNLLYSRIEQLWK-GKKGCKSLRCFPNNIHFRSPISLNFSYCVNFK-EFPQISG---NVRELYLRGTPIEYVP-SSID 588 (1094)
Q Consensus 515 ~~L~L~~n~i~~l~~-~~~~l~~L~~~~~~~~~~~l~~L~Ls~~~~l~-~~p~~~~---~L~~L~L~~~~l~~lp-~~i~ 588 (1094)
++|++++|+++.+.. .+..+++|+ +|++++|.... .+|..++ +|++|++++|.+..++ ..++
T Consensus 103 ~~L~L~~n~l~~l~~~~~~~l~~L~------------~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 170 (570)
T 2z63_A 103 QKLVAVETNLASLENFPIGHLKTLK------------ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170 (570)
T ss_dssp CEEECTTSCCCCSTTCSCTTCTTCC------------EEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGH
T ss_pred ccccccccccccCCCcccccccccc------------EEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHcc
Confidence 888888887777654 356666666 66666654222 2343322 5666666666665542 3455
Q ss_pred ccccc----ceeeccccccccc
Q 001348 589 CLAKL----EYLDLGHCTILES 606 (1094)
Q Consensus 589 ~L~~L----~~L~L~~~~~~~~ 606 (1094)
.+++| +.|++++|.+.+.
T Consensus 171 ~l~~L~~~~~~L~l~~n~l~~~ 192 (570)
T 2z63_A 171 VLHQMPLLNLSLDLSLNPMNFI 192 (570)
T ss_dssp HHHTCTTCCCEEECTTCCCCEE
T ss_pred chhccchhhhhcccCCCCceec
Confidence 55555 4555555544433
No 17
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=1.3e-28 Score=301.43 Aligned_cols=354 Identities=20% Similarity=0.145 Sum_probs=233.9
Q ss_pred eeecccccccccccCccccCCCCCceEEEEeCCCCCCccccccccccCCccccCcccccEEEecCCCCCCCCC--CCCcc
Q 001348 435 GIFLDLSKIRDINLNPQAFANMPNLRFLKFYMPKLFGISDMVCKLHLPQGLQYLSDELRYLHWHGYPLKMLPS--NFTPE 512 (1094)
Q Consensus 435 ~i~ldls~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~--~~~~~ 512 (1094)
-..+|++.+....+.+.+|.++++|++|++++|.+.. ..|..+..+ .+|++|++++|.++.+|. ...+.
T Consensus 54 L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~--------~~~~~~~~l-~~L~~L~L~~n~l~~l~~~~~~~l~ 124 (570)
T 2z63_A 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS--------LALGAFSGL-SSLQKLVAVETNLASLENFPIGHLK 124 (570)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE--------ECTTTTTTC-TTCCEEECTTSCCCCSTTCSCTTCT
T ss_pred ceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCc--------cCHhhhcCc-cccccccccccccccCCCccccccc
Confidence 3457777777777888999999999999999998753 123445555 479999999999999886 33689
Q ss_pred ccceeecccccccc--ccccCCCCCcCcccCCCCCCCCCeEEeccCCCCCcccCCccC---Cc----cEEEeccCCCCcc
Q 001348 513 NLIELNLLYSRIEQ--LWKGKKGCKSLRCFPNNIHFRSPISLNFSYCVNFKEFPQISG---NV----RELYLRGTPIEYV 583 (1094)
Q Consensus 513 ~L~~L~L~~n~i~~--l~~~~~~l~~L~~~~~~~~~~~l~~L~Ls~~~~l~~~p~~~~---~L----~~L~L~~~~l~~l 583 (1094)
+|++|++++|.++. ++..+..+++|+ .|++++|..-...+..+. +| +.|++++|.+..+
T Consensus 125 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~------------~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~ 192 (570)
T 2z63_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLE------------HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192 (570)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCC------------EEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEE
T ss_pred cccEEecCCCccceecChhhhcccCCCC------------EEeCcCCccceecHHHccchhccchhhhhcccCCCCceec
Confidence 99999999999986 577788888888 777777753322222222 44 5666666666655
Q ss_pred ccccccccccceeecccc----------------------------------------------------------cccc
Q 001348 584 PSSIDCLAKLEYLDLGHC----------------------------------------------------------TILE 605 (1094)
Q Consensus 584 p~~i~~L~~L~~L~L~~~----------------------------------------------------------~~~~ 605 (1094)
+.......+|+.|++++| .+.+
T Consensus 193 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~ 272 (570)
T 2z63_A 193 QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272 (570)
T ss_dssp CTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEES
T ss_pred CHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhh
Confidence 443333334555555544 2223
Q ss_pred cchhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccCcccccccch--------------------hhccCCCc
Q 001348 606 SISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEGTAITELPSS--------------------IEYLGGLT 665 (1094)
Q Consensus 606 ~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~--------------------l~~l~~L~ 665 (1094)
..|..+..+++|++|++++|... .+|..+..+ +|++|++++|.+..+|.. ...+++|+
T Consensus 273 ~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~ 350 (570)
T 2z63_A 273 DIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLE 350 (570)
T ss_dssp CSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCC
T ss_pred hchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCC
Confidence 34445555666666666665543 455555555 666666666666555541 04556666
Q ss_pred EEecCCCCCCCCC--CccccCCCcccEEecCCccCccCCccccCCCCCcEEEccCCCCCCCC--CCCCCCCCCCEEeCCC
Q 001348 666 TLNLTGCSKLDNL--PENLGNLKSLKMLCANESAISQLPSSITNLNELQVVWCSGCRGLILP--PSFSGLSYLTELDLSC 741 (1094)
Q Consensus 666 ~L~L~~~~~~~~l--p~~l~~l~~L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~~~~lp--~~l~~l~~L~~L~Ls~ 741 (1094)
+|++++|.+.+.. |..+..+++|+.|++++|.+..++..+..+++|+.|++++|.....+ ..+..+++|++|++++
T Consensus 351 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 430 (570)
T 2z63_A 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430 (570)
T ss_dssp EEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTT
T ss_pred EEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcC
Confidence 6666666544322 45566677777777777777766666777777777777777654443 3567777788888887
Q ss_pred CCCCC-CCccccCCCCCCeeecCCCCCc--ccchhhcCCCCCCEEEccCCCCCCCCCcccccccccccccccc
Q 001348 742 CNLIE-IPQDIGCLSLLRSLDLRKNNFE--YLPASMKHLSKLKSLDLSCCNMLQSLPELPLQLKFLQAKDCKQ 811 (1094)
Q Consensus 742 n~l~~-lp~~l~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~~~c~~ 811 (1094)
|.+.. .|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|++.+..|..+..+..|...++..
T Consensus 431 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 503 (570)
T 2z63_A 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503 (570)
T ss_dssp SCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCC
Confidence 77765 4555677778888888888776 5777777778888888888877776666554444444333333
No 18
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=2.7e-27 Score=270.60 Aligned_cols=302 Identities=20% Similarity=0.256 Sum_probs=192.7
Q ss_pred cCCCCCceEEEEeCCCCCCccccccccccCCccccCcccccEEEecCCCCCCCCCCCCccccceeeccccccccccccCC
Q 001348 453 FANMPNLRFLKFYMPKLFGISDMVCKLHLPQGLQYLSDELRYLHWHGYPLKMLPSNFTPENLIELNLLYSRIEQLWKGKK 532 (1094)
Q Consensus 453 f~~l~~Lr~L~l~~n~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~i~~l~~~~~ 532 (1094)
+..+++|+.|+++++.+.. ++ ++..+ ++|++|++++|.++.+|....+.+|++|++++|.++.+. .+.
T Consensus 40 ~~~l~~L~~L~l~~~~i~~---------~~-~~~~~-~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~ 107 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS---------IQ-GIEYL-TNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS-ALQ 107 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC---------CT-TGGGC-TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGT
T ss_pred chhcccccEEEEeCCcccc---------ch-hhhhc-CCccEEEccCCccccchhhhcCCcCCEEEccCCcccCch-HHc
Confidence 4567777888887776642 22 23443 367777777777777766445667777777777665542 233
Q ss_pred CCCcCcccCCCCCCCCCeEEeccCCCCCcccCCccCCccEEEeccCCCCccccccccccccceeecccccccccchhhhh
Q 001348 533 GCKSLRCFPNNIHFRSPISLNFSYCVNFKEFPQISGNVRELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILESISTSIC 612 (1094)
Q Consensus 533 ~l~~L~~~~~~~~~~~l~~L~Ls~~~~l~~~p~~~~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~ 612 (1094)
.++ +|++|++++|.+..+|. +..+++|++|++++|.....++. +.
T Consensus 108 ~l~---------------------------------~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~ 152 (347)
T 4fmz_A 108 NLT---------------------------------NLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-LS 152 (347)
T ss_dssp TCT---------------------------------TCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GT
T ss_pred CCC---------------------------------cCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc-hh
Confidence 333 56666666666666655 66677777777777765555544 66
Q ss_pred cCCcccEEeccCCcccCccchhhcccCccceeeccCcccccccchhhccCCCcEEecCCCCCCCCCCccccCCCcccEEe
Q 001348 613 KLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEGTAITELPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLC 692 (1094)
Q Consensus 613 ~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~ 692 (1094)
.+++|++|++++|......+ +..+++|++|++++|.++.++. +..+++|+.|++++|...+..+ +..+++|+.|+
T Consensus 153 ~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~ 227 (347)
T 4fmz_A 153 NMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLK 227 (347)
T ss_dssp TCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEE
T ss_pred hCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEE
Confidence 67777777777766544333 6667777777777777776665 6667777777777765544333 66677777777
Q ss_pred cCCccCccCCccccCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeCCCCCCCCCCccccCCCCCCeeecCCCCCccc-c
Q 001348 693 ANESAISQLPSSITNLNELQVVWCSGCRGLILPPSFSGLSYLTELDLSCCNLIEIPQDIGCLSLLRSLDLRKNNFEYL-P 771 (1094)
Q Consensus 693 l~~~~i~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l-p 771 (1094)
+++|.++.++. +..+++|+.|++++|....++ .+..+++|+.|++++|.+++++ .+..+++|+.|+|++|.++.. |
T Consensus 228 l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~ 304 (347)
T 4fmz_A 228 IGNNKITDLSP-LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDM 304 (347)
T ss_dssp CCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGH
T ss_pred ccCCccCCCcc-hhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcCh
Confidence 77777776655 667777777777777655543 4666777777777777777663 466677777777777777643 3
Q ss_pred hhhcCCCCCCEEEccCCCCCCCCC-cccccccccccccc
Q 001348 772 ASMKHLSKLKSLDLSCCNMLQSLP-ELPLQLKFLQAKDC 809 (1094)
Q Consensus 772 ~~l~~l~~L~~L~L~~~~~l~~lp-~~~~~L~~L~~~~c 809 (1094)
..+..+++|+.|+|++|++.+..| ..+++|+.|++.++
T Consensus 305 ~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 305 EVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQ 343 (347)
T ss_dssp HHHHTCTTCSEEECCSSSCCCCGGGGGCTTCSEESSSCC
T ss_pred hHhhccccCCEEEccCCccccccChhhhhccceeehhhh
Confidence 456677777777777777655544 22334444444443
No 19
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=4.1e-28 Score=299.37 Aligned_cols=329 Identities=17% Similarity=0.120 Sum_probs=229.0
Q ss_pred ecccccccccccCccccCCCCCceEEEEeCCCCCCccccccccccCCccccCcccccEEEecCCCCCCCCC-CC-Ccccc
Q 001348 437 FLDLSKIRDINLNPQAFANMPNLRFLKFYMPKLFGISDMVCKLHLPQGLQYLSDELRYLHWHGYPLKMLPS-NF-TPENL 514 (1094)
Q Consensus 437 ~ldls~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L 514 (1094)
.+|++......++.... ++|+.|++++|.+++ ..+..+..+ ++|++|++++|.++.+++ .| .+.+|
T Consensus 15 ~~~c~~~~l~~ip~~~~---~~l~~L~Ls~n~l~~--------~~~~~~~~l-~~L~~L~Ls~n~l~~i~~~~~~~l~~L 82 (606)
T 3vq2_A 15 TYQCMDQKLSKVPDDIP---SSTKNIDLSFNPLKI--------LKSYSFSNF-SELQWLDLSRCEIETIEDKAWHGLHHL 82 (606)
T ss_dssp EEECTTSCCSSCCTTSC---TTCCEEECTTSCCCE--------ECTTTTTTC-TTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred ceEccCCCcccCCCCCC---CCcCEEECCCCCcCE--------eChhhccCC-ccCcEEeCCCCcccccCHHHhhchhhc
Confidence 45555554444444322 789999999998864 223345555 479999999999998854 44 58999
Q ss_pred ceeeccccccccc-cccCCCCCcCcccCCCCCCCCCeEEeccCCCCCcccCCccC---CccEEEeccCCCC--ccccccc
Q 001348 515 IELNLLYSRIEQL-WKGKKGCKSLRCFPNNIHFRSPISLNFSYCVNFKEFPQISG---NVRELYLRGTPIE--YVPSSID 588 (1094)
Q Consensus 515 ~~L~L~~n~i~~l-~~~~~~l~~L~~~~~~~~~~~l~~L~Ls~~~~l~~~p~~~~---~L~~L~L~~~~l~--~lp~~i~ 588 (1094)
++|+|++|.++.+ +..+..+++|+ +|++++|......+..++ +|++|+|++|.+. .+|..++
T Consensus 83 ~~L~Ls~n~l~~~~p~~~~~l~~L~------------~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~ 150 (606)
T 3vq2_A 83 SNLILTGNPIQSFSPGSFSGLTSLE------------NLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 150 (606)
T ss_dssp CEEECTTCCCCCCCTTSSTTCTTCC------------EEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGG
T ss_pred CEeECCCCcccccChhhcCCcccCC------------EEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHh
Confidence 9999999999988 66788888888 999998864332223333 8999999999887 4788899
Q ss_pred cccccceeecccccccccchhhhhcCCccc----EEeccCCcccCccchhhcccCccceeeccCcccc--cccc------
Q 001348 589 CLAKLEYLDLGHCTILESISTSICKLKSLL----KLCLDNCSKLESFPEILEKMGCLEDIDLEGTAIT--ELPS------ 656 (1094)
Q Consensus 589 ~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~----~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~--~lp~------ 656 (1094)
++++|++|++++|.+.+..|..++.+.+|+ +|++++|.+.+..+..+.. .+|+.|++++|.+. .+|.
T Consensus 151 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~ 229 (606)
T 3vq2_A 151 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLA 229 (606)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTT
T ss_pred hcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccC-ceeeeeeccCCccchhHHHHHhcccc
Confidence 999999999999988887777777666654 6888887765444444433 36777777766542 1111
Q ss_pred --------------------------------------------------hhhccCCCcEEecCCCCCCCCCCccccCCC
Q 001348 657 --------------------------------------------------SIEYLGGLTTLNLTGCSKLDNLPENLGNLK 686 (1094)
Q Consensus 657 --------------------------------------------------~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~ 686 (1094)
.+..+++|+.|++++|.. ..+| .+..++
T Consensus 230 ~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~l~-~l~~~~ 307 (606)
T 3vq2_A 230 GLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI-KYLE-DVPKHF 307 (606)
T ss_dssp TCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCC-CCCC-CCCTTC
T ss_pred ccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccc-hhhh-hccccc
Confidence 144556667777776654 4455 666777
Q ss_pred cccEEecCCccCccCCccccCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeCCCCCCCCC---CccccCCCCCCeeecC
Q 001348 687 SLKMLCANESAISQLPSSITNLNELQVVWCSGCRGLILPPSFSGLSYLTELDLSCCNLIEI---PQDIGCLSLLRSLDLR 763 (1094)
Q Consensus 687 ~L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~l---p~~l~~l~~L~~L~L~ 763 (1094)
+|+.|++++|.++.+| .+ .+++|+.|++++|..... ..+..+++|+.|++++|.++.+ |..+..+++|+.|+|+
T Consensus 308 ~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~-~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~ 384 (606)
T 3vq2_A 308 KWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSIS-FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLS 384 (606)
T ss_dssp CCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEE-CCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECC
T ss_pred cCCEEEcccccCcccc-cC-CCCccceeeccCCcCccc-hhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECC
Confidence 7777777777776666 34 677777777777743221 1455677777777777776654 5566677777777777
Q ss_pred CCCCcccchhhcCCCCCCEEEccCCCCCCCCC
Q 001348 764 KNNFEYLPASMKHLSKLKSLDLSCCNMLQSLP 795 (1094)
Q Consensus 764 ~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp 795 (1094)
+|.++.+|..+..+++|+.|++++|++.+..|
T Consensus 385 ~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 416 (606)
T 3vq2_A 385 FNGAIIMSANFMGLEELQHLDFQHSTLKRVTE 416 (606)
T ss_dssp SCSEEEECCCCTTCTTCCEEECTTSEEESTTT
T ss_pred CCccccchhhccCCCCCCeeECCCCccCCccC
Confidence 77777777667777777777777777666655
No 20
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=1.9e-27 Score=283.16 Aligned_cols=306 Identities=22% Similarity=0.301 Sum_probs=231.8
Q ss_pred ccCCCCCceEEEEeCCCCCCccccccccccCCccccCcccccEEEecCCCCCCCCCCCCccccceeeccccccccccccC
Q 001348 452 AFANMPNLRFLKFYMPKLFGISDMVCKLHLPQGLQYLSDELRYLHWHGYPLKMLPSNFTPENLIELNLLYSRIEQLWKGK 531 (1094)
Q Consensus 452 ~f~~l~~Lr~L~l~~n~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~i~~l~~~~ 531 (1094)
.|..+++|++|++++|.+.++ +. +..+ .+|++|++++|.++.++....+.+|++|++++|.++.+.. +
T Consensus 63 ~~~~l~~L~~L~Ls~n~l~~~---------~~-~~~l-~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~ 130 (466)
T 1o6v_A 63 GVEYLNNLTQINFSNNQLTDI---------TP-LKNL-TKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-L 130 (466)
T ss_dssp TGGGCTTCCEEECCSSCCCCC---------GG-GTTC-TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-G
T ss_pred chhhhcCCCEEECCCCccCCc---------hh-hhcc-ccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH-H
Confidence 367788888888888877542 22 3444 4688888888888888775567888888888888887654 6
Q ss_pred CCCCcCcccCCCCCCCCCeEEeccCCCCCcccCCccC--CccEEEeccCCCCccccccccccccceeecccccccccchh
Q 001348 532 KGCKSLRCFPNNIHFRSPISLNFSYCVNFKEFPQISG--NVRELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILESIST 609 (1094)
Q Consensus 532 ~~l~~L~~~~~~~~~~~l~~L~Ls~~~~l~~~p~~~~--~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~ 609 (1094)
..+++|+ .|++++|. +..++.+.. +|++|++. +.+..++. +..+++|++|++++|.+.. ++
T Consensus 131 ~~l~~L~------------~L~l~~n~-l~~~~~~~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~~n~l~~-~~- 193 (466)
T 1o6v_A 131 KNLTNLN------------RLELSSNT-ISDISALSGLTSLQQLSFG-NQVTDLKP-LANLTTLERLDISSNKVSD-IS- 193 (466)
T ss_dssp TTCTTCS------------EEEEEEEE-ECCCGGGTTCTTCSEEEEE-ESCCCCGG-GTTCTTCCEEECCSSCCCC-CG-
T ss_pred cCCCCCC------------EEECCCCc-cCCChhhccCCcccEeecC-CcccCchh-hccCCCCCEEECcCCcCCC-Ch-
Confidence 6667777 88888774 444444333 78888886 45555543 7788888888888887644 33
Q ss_pred hhhcCCcccEEeccCCcccCccchhhcccCccceeeccCcccccccchhhccCCCcEEecCCCCCCCCCCccccCCCccc
Q 001348 610 SICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEGTAITELPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLK 689 (1094)
Q Consensus 610 ~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~ 689 (1094)
.+.++++|++|++++|...+..| ++.+++|++|++++|.++.++ .+..+++|+.|++++|.+.+..| +..+++|+
T Consensus 194 ~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 268 (466)
T 1o6v_A 194 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLT 268 (466)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCS
T ss_pred hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh--hhcCCCCC
Confidence 37778888888888887766554 677888888888888888775 47788888888888887665544 77888888
Q ss_pred EEecCCccCccCCccccCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeCCCCCCCCCCccccCCCCCCeeecCCCCCcc
Q 001348 690 MLCANESAISQLPSSITNLNELQVVWCSGCRGLILPPSFSGLSYLTELDLSCCNLIEIPQDIGCLSLLRSLDLRKNNFEY 769 (1094)
Q Consensus 690 ~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~ 769 (1094)
.|++++|.++.++. +..+++|+.|++++|....+++ +..+++|+.|+|++|++++++. ++.+++|+.|++++|.++.
T Consensus 269 ~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~ 345 (466)
T 1o6v_A 269 ELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSD 345 (466)
T ss_dssp EEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCC
T ss_pred EEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCC
Confidence 88888888887765 7788888888888888766665 7788888888888888887655 6778888888888888887
Q ss_pred cchhhcCCCCCCEEEccCCCCCCCCC
Q 001348 770 LPASMKHLSKLKSLDLSCCNMLQSLP 795 (1094)
Q Consensus 770 lp~~l~~l~~L~~L~L~~~~~l~~lp 795 (1094)
++ .+..+++|+.|++++|++.+..|
T Consensus 346 ~~-~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 346 VS-SLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp CG-GGTTCTTCCEEECCSSCCCBCGG
T ss_pred ch-hhccCCCCCEEeCCCCccCccch
Confidence 75 67788888888888888776665
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=1.4e-27 Score=291.47 Aligned_cols=349 Identities=16% Similarity=0.108 Sum_probs=239.6
Q ss_pred ecccccccccccCccccCCCCCceEEEEeCCCCCCccccccccccCCccccCcccccEEEecCCCCCCCCCCCCccccce
Q 001348 437 FLDLSKIRDINLNPQAFANMPNLRFLKFYMPKLFGISDMVCKLHLPQGLQYLSDELRYLHWHGYPLKMLPSNFTPENLIE 516 (1094)
Q Consensus 437 ~ldls~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~ 516 (1094)
.+|++.+....+.+.+|.++++|++|++++|.+++ ..|..+..+ .+|++|++++|.++.+|.. .+.+|++
T Consensus 56 ~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--------~~~~~~~~l-~~L~~L~Ls~N~l~~lp~~-~l~~L~~ 125 (562)
T 3a79_B 56 ALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS--------LDFHVFLFN-QDLEYLDVSHNRLQNISCC-PMASLRH 125 (562)
T ss_dssp EEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCE--------ECTTTTTTC-TTCCEEECTTSCCCEECSC-CCTTCSE
T ss_pred EEECCCCCccccChhhhccCCCccEEECCCCCCCc--------CCHHHhCCC-CCCCEEECCCCcCCccCcc-ccccCCE
Confidence 57788888888888999999999999999998864 224455555 4799999999999999988 8999999
Q ss_pred eecccccccccc--ccCCCCCcCcccCCCCCCCCCeEEeccCCCCCcccCCccCCc--cEEEeccCCC--C-ccccccc-
Q 001348 517 LNLLYSRIEQLW--KGKKGCKSLRCFPNNIHFRSPISLNFSYCVNFKEFPQISGNV--RELYLRGTPI--E-YVPSSID- 588 (1094)
Q Consensus 517 L~L~~n~i~~l~--~~~~~l~~L~~~~~~~~~~~l~~L~Ls~~~~l~~~p~~~~~L--~~L~L~~~~l--~-~lp~~i~- 588 (1094)
|++++|+++.++ ..+..+++|+ .|+++++..-........+| ++|+|++|.+ . ..|..+.
T Consensus 126 L~Ls~N~l~~l~~p~~~~~l~~L~------------~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~ 193 (562)
T 3a79_B 126 LDLSFNDFDVLPVCKEFGNLTKLT------------FLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQI 193 (562)
T ss_dssp EECCSSCCSBCCCCGGGGGCTTCC------------EEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEE
T ss_pred EECCCCCccccCchHhhcccCccc------------EEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccc
Confidence 999999999865 5677888888 88888765322111112244 8888887776 3 2233332
Q ss_pred -------------------------cccccceeeccccc----------------------------ccc----cchhhh
Q 001348 589 -------------------------CLAKLEYLDLGHCT----------------------------ILE----SISTSI 611 (1094)
Q Consensus 589 -------------------------~L~~L~~L~L~~~~----------------------------~~~----~lp~~i 611 (1094)
.+++|+.|++++|. +.+ .++..+
T Consensus 194 l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~ 273 (562)
T 3a79_B 194 PNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF 273 (562)
T ss_dssp CCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH
T ss_pred cCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh
Confidence 34566666666552 100 011111
Q ss_pred hcCCcccEEeccCCcccCccchhh-----cccCc--------------------------cceeeccCcccccccchhhc
Q 001348 612 CKLKSLLKLCLDNCSKLESFPEIL-----EKMGC--------------------------LEDIDLEGTAITELPSSIEY 660 (1094)
Q Consensus 612 ~~l~~L~~L~L~~~~~~~~~p~~l-----~~l~~--------------------------L~~L~L~~~~i~~lp~~l~~ 660 (1094)
...+|++|++++|.+.+.+|..+ .+++. |++|++++|.+..++. ...
T Consensus 274 -~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~ 351 (562)
T 3a79_B 274 -WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC-PPS 351 (562)
T ss_dssp -TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCC-CSS
T ss_pred -hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccC-ccC
Confidence 13477788888877776777655 44444 4555555555443321 156
Q ss_pred cCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccCC---ccccCCCCCcEEEccCCCCCC-CCCC-CCCCCCCC
Q 001348 661 LGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQLP---SSITNLNELQVVWCSGCRGLI-LPPS-FSGLSYLT 735 (1094)
Q Consensus 661 l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p---~~l~~l~~L~~L~l~~~~~~~-lp~~-l~~l~~L~ 735 (1094)
+++|++|++++|.+.+..|..++++++|+.|++++|.++.++ ..+..+++|+.|++++|.... +|.. +..+++|+
T Consensus 352 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~ 431 (562)
T 3a79_B 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL 431 (562)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCC
T ss_pred CCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCC
Confidence 778888888888877777778888888888888888877654 457778888888888887655 5553 66778888
Q ss_pred EEeCCCCCCCC-CCccccCCCCCCeeecCCCCCcccchhhcCCCCCCEEEccCCCCCCCCCcc-ccccccccccccccc
Q 001348 736 ELDLSCCNLIE-IPQDIGCLSLLRSLDLRKNNFEYLPASMKHLSKLKSLDLSCCNMLQSLPEL-PLQLKFLQAKDCKQL 812 (1094)
Q Consensus 736 ~L~Ls~n~l~~-lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~-~~~L~~L~~~~c~~l 812 (1094)
.|+|++|.++. +|..+. ++|+.|+|++|+++.+|..+..+++|+.|+|++|++. .+|.. +..+..|...++..+
T Consensus 432 ~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 432 VLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN 507 (562)
T ss_dssp EEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSC
T ss_pred EEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCC
Confidence 88888888764 443332 5788888888888888877778888888888888766 45543 444444444443333
No 22
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=3.9e-27 Score=294.68 Aligned_cols=350 Identities=22% Similarity=0.193 Sum_probs=178.8
Q ss_pred ecccccccccccCccccCCCCCceEEEEeCCCCCCccccccccccCCccccCcccccEEEecCCCCCCCCCC-C-Ccccc
Q 001348 437 FLDLSKIRDINLNPQAFANMPNLRFLKFYMPKLFGISDMVCKLHLPQGLQYLSDELRYLHWHGYPLKMLPSN-F-TPENL 514 (1094)
Q Consensus 437 ~ldls~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~~~~L 514 (1094)
.+|++.+....+.+.+|.++++|++|++++|.+.+ ..|..+..+ .+|++|++++|.++.+|.. | .+.+|
T Consensus 29 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--------~~~~~~~~l-~~L~~L~L~~n~l~~l~~~~~~~l~~L 99 (680)
T 1ziw_A 29 VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK--------LEPELCQKL-PMLKVLNLQHNELSQLSDKTFAFCTNL 99 (680)
T ss_dssp EEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCC--------CCTTHHHHC-TTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred EEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCc--------cCHHHHhcc-cCcCEEECCCCccCccChhhhccCCCC
Confidence 46667766667777788888888888888887754 223444455 3688888888888888863 3 57888
Q ss_pred ceeecccccccccc-ccCCCCCcCccc-----------CCC-CCCCCCeEEeccCCCCCcccCC---cc--CCccEEEec
Q 001348 515 IELNLLYSRIEQLW-KGKKGCKSLRCF-----------PNN-IHFRSPISLNFSYCVNFKEFPQ---IS--GNVRELYLR 576 (1094)
Q Consensus 515 ~~L~L~~n~i~~l~-~~~~~l~~L~~~-----------~~~-~~~~~l~~L~Ls~~~~l~~~p~---~~--~~L~~L~L~ 576 (1094)
++|++++|+++.+. ..+..+++|+.+ +.. ..+.+|+.|++++|..-...+. .. .+|++|+++
T Consensus 100 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~ 179 (680)
T 1ziw_A 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179 (680)
T ss_dssp SEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECT
T ss_pred CEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECC
Confidence 88888888887765 346666666610 000 0222333444444432111111 00 144555555
Q ss_pred cCCCCccc-cccccc---------------------------cccceeecccccccccchhhhhcCCc--ccEEeccCCc
Q 001348 577 GTPIEYVP-SSIDCL---------------------------AKLEYLDLGHCTILESISTSICKLKS--LLKLCLDNCS 626 (1094)
Q Consensus 577 ~~~l~~lp-~~i~~L---------------------------~~L~~L~L~~~~~~~~lp~~i~~l~~--L~~L~L~~~~ 626 (1094)
+|.+..++ ..+..+ ++|+.|++++|.+.+..|..+.+++. |++|++++|.
T Consensus 180 ~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~ 259 (680)
T 1ziw_A 180 SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259 (680)
T ss_dssp TCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC
T ss_pred CCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCC
Confidence 54444332 222222 22333444444443333444443332 5555555554
Q ss_pred ccCccchhhcccCccceeeccCcccccc-cchhhccCCCcEEecCCCCCCC-----CCCc----cccCCCcccEEecCCc
Q 001348 627 KLESFPEILEKMGCLEDIDLEGTAITEL-PSSIEYLGGLTTLNLTGCSKLD-----NLPE----NLGNLKSLKMLCANES 696 (1094)
Q Consensus 627 ~~~~~p~~l~~l~~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~L~~~~~~~-----~lp~----~l~~l~~L~~L~l~~~ 696 (1094)
+.+..|..++++++|++|++++|.++.+ |..+..+++|+.|++++|...+ .+|. .+..+++|+.|++++|
T Consensus 260 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n 339 (680)
T 1ziw_A 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN 339 (680)
T ss_dssp CCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC
T ss_pred cCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCC
Confidence 4444444455555555555555554432 2344555555555555433221 2222 3445555555555555
Q ss_pred cCccC-CccccCCCCCcEEEccCCC--CCCCCC-CCCC--CCCCCEEeCCCCCCCCC-CccccCCCCCCeeecCCCCCc-
Q 001348 697 AISQL-PSSITNLNELQVVWCSGCR--GLILPP-SFSG--LSYLTELDLSCCNLIEI-PQDIGCLSLLRSLDLRKNNFE- 768 (1094)
Q Consensus 697 ~i~~~-p~~l~~l~~L~~L~l~~~~--~~~lp~-~l~~--l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~n~l~- 768 (1094)
.++.+ +..+..+++|+.|++++|. ...++. .+.. .++|+.|++++|+++.+ |..+..+++|+.|+|++|.++
T Consensus 340 ~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 419 (680)
T 1ziw_A 340 DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ 419 (680)
T ss_dssp CBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEE
T ss_pred ccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcc
Confidence 55544 2335555555555555543 111111 1111 13455555555555543 334555566666666666654
Q ss_pred ccc-hhhcCCCCCCEEEccCCCCCCCCC
Q 001348 769 YLP-ASMKHLSKLKSLDLSCCNMLQSLP 795 (1094)
Q Consensus 769 ~lp-~~l~~l~~L~~L~L~~~~~l~~lp 795 (1094)
.+| ..+..+++|++|+|++|++.+..+
T Consensus 420 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 447 (680)
T 1ziw_A 420 ELTGQEWRGLENIFEIYLSYNKYLQLTR 447 (680)
T ss_dssp ECCSGGGTTCTTCCEEECCSCSEEECCT
T ss_pred ccCcccccCcccccEEecCCCCcceeCh
Confidence 343 345555666666666665444333
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=9.7e-28 Score=285.08 Aligned_cols=337 Identities=20% Similarity=0.157 Sum_probs=152.8
Q ss_pred cccccccccccCccccCCCCCceEEEEeCCCCCCccccccccccC-CccccCcccccEEEecCCCCCCC-CCCC-Ccccc
Q 001348 438 LDLSKIRDINLNPQAFANMPNLRFLKFYMPKLFGISDMVCKLHLP-QGLQYLSDELRYLHWHGYPLKML-PSNF-TPENL 514 (1094)
Q Consensus 438 ldls~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~~~~~~~~~~l~-~~l~~l~~~Lr~L~l~~~~l~~l-p~~~-~~~~L 514 (1094)
+|++.+....+.+.+|.++++|++|++++|.+.+ .++ ..+..+ ++|++|++++|.++.+ |..+ .+.+|
T Consensus 35 L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~--------~i~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L 105 (455)
T 3v47_A 35 VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGL--------VIRNNTFRGL-SSLIILKLDYNQFLQLETGAFNGLANL 105 (455)
T ss_dssp EECCSSCCCEECTTTTSSCTTCCEEECCCCSTTC--------EECTTTTTTC-TTCCEEECTTCTTCEECTTTTTTCTTC
T ss_pred EEecCCccCcCChhHhccCccccEEECcCCcccc--------eECccccccc-ccCCEEeCCCCccCccChhhccCcccC
Confidence 4444444444445555555555555555554421 121 222223 2455555555555544 2223 24555
Q ss_pred ceeeccccccccc-ccc--CCCCCcCcccCCCCCCCCCeEEeccCCCCCcccCCc-c---CCccEEEeccCCCCcc-ccc
Q 001348 515 IELNLLYSRIEQL-WKG--KKGCKSLRCFPNNIHFRSPISLNFSYCVNFKEFPQI-S---GNVRELYLRGTPIEYV-PSS 586 (1094)
Q Consensus 515 ~~L~L~~n~i~~l-~~~--~~~l~~L~~~~~~~~~~~l~~L~Ls~~~~l~~~p~~-~---~~L~~L~L~~~~l~~l-p~~ 586 (1094)
++|+|++|+++.. +.. +..+++|+ .|++++|......|.. + .+|++|+|++|.+..+ |..
T Consensus 106 ~~L~L~~n~l~~~~~~~~~~~~l~~L~------------~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 173 (455)
T 3v47_A 106 EVLTLTQCNLDGAVLSGNFFKPLTSLE------------MLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED 173 (455)
T ss_dssp CEEECTTSCCBTHHHHSSTTTTCTTCC------------EEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTT
T ss_pred CEEeCCCCCCCccccCcccccCcccCC------------EEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhh
Confidence 5555555555431 111 33344444 5555544322222221 1 1455555555544433 233
Q ss_pred cccc--cccceeecccccccccchhh--------hhcCCcccEEeccCCcccCccchhhccc---CccceeeccCccccc
Q 001348 587 IDCL--AKLEYLDLGHCTILESISTS--------ICKLKSLLKLCLDNCSKLESFPEILEKM---GCLEDIDLEGTAITE 653 (1094)
Q Consensus 587 i~~L--~~L~~L~L~~~~~~~~lp~~--------i~~l~~L~~L~L~~~~~~~~~p~~l~~l---~~L~~L~L~~~~i~~ 653 (1094)
+..+ .+|+.|++++|.+....+.. +..+++|++|++++|.+.+..|..+..+ ++|+.|++++|.+..
T Consensus 174 l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 253 (455)
T 3v47_A 174 LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG 253 (455)
T ss_dssp SGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTS
T ss_pred hhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccc
Confidence 3333 34455555544443322211 1123445555555554444444444333 445555554443221
Q ss_pred cc-----------chhh--ccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccC-CccccCCCCCcEEEccCC
Q 001348 654 LP-----------SSIE--YLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQL-PSSITNLNELQVVWCSGC 719 (1094)
Q Consensus 654 lp-----------~~l~--~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~-p~~l~~l~~L~~L~l~~~ 719 (1094)
.. ..+. ..++|+.|++++|.+.+..|..++.+++|+.|++++|.++.+ |..+..+++|+.|++++|
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 333 (455)
T 3v47_A 254 SSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN 333 (455)
T ss_dssp CCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC
Confidence 10 0011 113455555555555554555555555555555555555543 334555555555555555
Q ss_pred CCCCC-CCCCCCCCCCCEEeCCCCCCCCC-CccccCCCCCCeeecCCCCCcccchh-hcCCCCCCEEEccCCCCCCCCC
Q 001348 720 RGLIL-PPSFSGLSYLTELDLSCCNLIEI-PQDIGCLSLLRSLDLRKNNFEYLPAS-MKHLSKLKSLDLSCCNMLQSLP 795 (1094)
Q Consensus 720 ~~~~l-p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~~~~l~~lp 795 (1094)
....+ |..+.++++|++|+|++|.++.+ |..+..+++|+.|+|++|+++.+|.. +..+++|+.|+|++|++.+..|
T Consensus 334 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 334 FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 54333 23344555555555555555543 33455555555555555555554432 3445555555555555544444
No 24
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=2.3e-27 Score=302.99 Aligned_cols=349 Identities=19% Similarity=0.173 Sum_probs=186.8
Q ss_pred ecccccccccccCccccCCCCCceEEEEeCCCCCCcccccccccc-CCccccCcccccEEEecCCCCCCC-CCCC-Cccc
Q 001348 437 FLDLSKIRDINLNPQAFANMPNLRFLKFYMPKLFGISDMVCKLHL-PQGLQYLSDELRYLHWHGYPLKML-PSNF-TPEN 513 (1094)
Q Consensus 437 ~ldls~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~~~~~~~~~~l-~~~l~~l~~~Lr~L~l~~~~l~~l-p~~~-~~~~ 513 (1094)
.+|++.+....+.+.+|.++++|++|++++|...+ .+ |..+..++ +|++|++++|.++.+ |..| .+.+
T Consensus 28 ~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~--------~i~~~~f~~L~-~L~~L~Ls~N~l~~~~p~~~~~l~~ 98 (844)
T 3j0a_A 28 RLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL--------TIDKEAFRNLP-NLRILDLGSSKIYFLHPDAFQGLFH 98 (844)
T ss_dssp EEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCC--------EECTTTTSSCT-TCCEEECTTCCCCEECTTSSCSCSS
T ss_pred EEECCCCcCCccChhHCcccccCeEEeCCCCCCcc--------ccCHHHhcCCC-CCCEEECCCCcCcccCHhHccCCcc
Confidence 46777777777778888888888888888875421 33 44555553 688888888888876 4455 4788
Q ss_pred cceeecccccccc-cccc--CCCCCcCcccCCCCCCCCCeEEeccCCCCCcccC-Cc---cCCccEEEeccCCCCcc-cc
Q 001348 514 LIELNLLYSRIEQ-LWKG--KKGCKSLRCFPNNIHFRSPISLNFSYCVNFKEFP-QI---SGNVRELYLRGTPIEYV-PS 585 (1094)
Q Consensus 514 L~~L~L~~n~i~~-l~~~--~~~l~~L~~~~~~~~~~~l~~L~Ls~~~~l~~~p-~~---~~~L~~L~L~~~~l~~l-p~ 585 (1094)
|++|+|++|.+.. ++.. +..+++|+ .|++++|......+ .. ..+|++|+|++|.+..+ |.
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~------------~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~ 166 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNLKALT------------RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH 166 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSCSSCC------------EEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG
T ss_pred cCEeeCcCCCCCcccccCccccccCCCC------------EEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHH
Confidence 8888888888875 2332 56666776 77777665333222 11 12666777777666543 44
Q ss_pred ccccc--cccceeecccccccccchhhhhcCCc------ccEEeccCCcccCccchhhcc--------------------
Q 001348 586 SIDCL--AKLEYLDLGHCTILESISTSICKLKS------LLKLCLDNCSKLESFPEILEK-------------------- 637 (1094)
Q Consensus 586 ~i~~L--~~L~~L~L~~~~~~~~lp~~i~~l~~------L~~L~L~~~~~~~~~p~~l~~-------------------- 637 (1094)
.+..+ ++|+.|++++|.+.+..|..++++.+ |+.|++++|...+..|..+..
T Consensus 167 ~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~ 246 (844)
T 3j0a_A 167 ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG 246 (844)
T ss_dssp GGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS
T ss_pred HcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccc
Confidence 44444 55555555555555544444333333 555555554333222221111
Q ss_pred ------------------cCccceeeccCcccccc-cchhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccC
Q 001348 638 ------------------MGCLEDIDLEGTAITEL-PSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAI 698 (1094)
Q Consensus 638 ------------------l~~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i 698 (1094)
.++|+.|++++|.+..+ |..+..+++|+.|+|++|.+.+..|..+..+++|+.|++++|.+
T Consensus 247 ~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l 326 (844)
T 3j0a_A 247 FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326 (844)
T ss_dssp SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCC
T ss_pred ccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCC
Confidence 13444444444444433 23344444445555544444444444444444444444444444
Q ss_pred ccC-CccccCCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeCCCCCCC-------------------CCCccccCCCCC
Q 001348 699 SQL-PSSITNLNELQVVWCSGCRGLILPP-SFSGLSYLTELDLSCCNLI-------------------EIPQDIGCLSLL 757 (1094)
Q Consensus 699 ~~~-p~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~Ls~n~l~-------------------~lp~~l~~l~~L 757 (1094)
+.+ |..+..+++|+.|++++|....++. .+.++++|+.|+|++|.++ .+|.. ..++
T Consensus 327 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~---~~~l 403 (844)
T 3j0a_A 327 GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKI---NLTA 403 (844)
T ss_dssp SCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCC---CTTC
T ss_pred CccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCccccccc---cccc
Confidence 433 3344444444444444444333332 2444444444444444444 33322 2344
Q ss_pred CeeecCCCCCcccch--hhcCCCCCCEEEccCCCCCCCCC----cccccccccccccc
Q 001348 758 RSLDLRKNNFEYLPA--SMKHLSKLKSLDLSCCNMLQSLP----ELPLQLKFLQAKDC 809 (1094)
Q Consensus 758 ~~L~L~~n~l~~lp~--~l~~l~~L~~L~L~~~~~l~~lp----~~~~~L~~L~~~~c 809 (1094)
+.|++++|+++.++. .+..+++|+.|+|++|++.+..+ ..+++|+.|++.++
T Consensus 404 ~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N 461 (844)
T 3j0a_A 404 NLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN 461 (844)
T ss_dssp CEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESC
T ss_pred ceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCC
Confidence 445555555544332 24467777777777777654322 22344555555443
No 25
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=4.6e-27 Score=294.00 Aligned_cols=244 Identities=24% Similarity=0.260 Sum_probs=159.2
Q ss_pred CccEEEeccCCCCcc-ccccccccccceeecccccccc-----cchh----hhhcCCcccEEeccCCcccCccchhhccc
Q 001348 569 NVRELYLRGTPIEYV-PSSIDCLAKLEYLDLGHCTILE-----SIST----SICKLKSLLKLCLDNCSKLESFPEILEKM 638 (1094)
Q Consensus 569 ~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~~~-----~lp~----~i~~l~~L~~L~L~~~~~~~~~p~~l~~l 638 (1094)
+|++|+|++|.+..+ |..+..+++|++|++++|...+ .+|. .+..+++|++|++++|.+.+..|..+.++
T Consensus 273 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 352 (680)
T 1ziw_A 273 QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL 352 (680)
T ss_dssp TCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTC
T ss_pred cccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccc
Confidence 455555555555433 2334444444444444332111 1121 34455666666666666665555555555
Q ss_pred CccceeeccC----------------------------cccccc-cchhhccCCCcEEecCCCCCCCCCC-ccccCCCcc
Q 001348 639 GCLEDIDLEG----------------------------TAITEL-PSSIEYLGGLTTLNLTGCSKLDNLP-ENLGNLKSL 688 (1094)
Q Consensus 639 ~~L~~L~L~~----------------------------~~i~~l-p~~l~~l~~L~~L~L~~~~~~~~lp-~~l~~l~~L 688 (1094)
++|++|++++ |.++.+ |..+..+++|+.|++++|.+.+.+| ..+.++++|
T Consensus 353 ~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L 432 (680)
T 1ziw_A 353 INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENI 432 (680)
T ss_dssp TTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTC
T ss_pred cCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccc
Confidence 5555555544 444433 4567788889999999888776665 578888889
Q ss_pred cEEecCCccCccC-CccccCCCCCcEEEccCCCC---CCCCCCCCCCCCCCEEeCCCCCCCCCCcc-ccCCCCCCeeecC
Q 001348 689 KMLCANESAISQL-PSSITNLNELQVVWCSGCRG---LILPPSFSGLSYLTELDLSCCNLIEIPQD-IGCLSLLRSLDLR 763 (1094)
Q Consensus 689 ~~L~l~~~~i~~~-p~~l~~l~~L~~L~l~~~~~---~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~ 763 (1094)
+.|++++|.+..+ +..+..+++|+.|++++|.. ...|..+.++++|+.|+|++|+++.+|.. +..+++|+.|+|+
T Consensus 433 ~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls 512 (680)
T 1ziw_A 433 FEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQ 512 (680)
T ss_dssp CEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCC
Confidence 9999988888765 45677788888888888774 35677788888888888888888877654 6778888888888
Q ss_pred CCCCcccch---------hhcCCCCCCEEEccCCCCCCCCC-cccccccccccccccccc
Q 001348 764 KNNFEYLPA---------SMKHLSKLKSLDLSCCNMLQSLP-ELPLQLKFLQAKDCKQLQ 813 (1094)
Q Consensus 764 ~n~l~~lp~---------~l~~l~~L~~L~L~~~~~l~~lp-~~~~~L~~L~~~~c~~l~ 813 (1094)
+|+++.++. .+..+++|+.|+|++|.+. .+| ..+..+..|...++..+.
T Consensus 513 ~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~ 571 (680)
T 1ziw_A 513 HNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNN 571 (680)
T ss_dssp SSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHcccccCcceeECCCCC
Confidence 888876532 2577788888888888766 444 345555555555555443
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=4.2e-27 Score=280.19 Aligned_cols=316 Identities=20% Similarity=0.248 Sum_probs=267.9
Q ss_pred ecccccccccccCccccCCCCCceEEEEeCCCCCCccccccccccCCccccCcccccEEEecCCCCCCCCCCCCccccce
Q 001348 437 FLDLSKIRDINLNPQAFANMPNLRFLKFYMPKLFGISDMVCKLHLPQGLQYLSDELRYLHWHGYPLKMLPSNFTPENLIE 516 (1094)
Q Consensus 437 ~ldls~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~ 516 (1094)
.+|++.+....+.+ |.++++|++|++++|.+.+. +. +..+ .+|++|++++|.++.+|....+.+|++
T Consensus 72 ~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~---------~~-~~~l-~~L~~L~L~~n~l~~~~~~~~l~~L~~ 138 (466)
T 1o6v_A 72 QINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI---------TP-LANL-TNLTGLTLFNNQITDIDPLKNLTNLNR 138 (466)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC---------GG-GTTC-TTCCEEECCSSCCCCCGGGTTCTTCSE
T ss_pred EEECCCCccCCchh--hhccccCCEEECCCCccccC---------hh-hcCC-CCCCEEECCCCCCCCChHHcCCCCCCE
Confidence 46666665555544 99999999999999988642 22 4444 479999999999999998667999999
Q ss_pred eeccccccccccccCCCCCcCcccCCCCCCCCCeEEeccCCCCCcccCCccC--CccEEEeccCCCCccccccccccccc
Q 001348 517 LNLLYSRIEQLWKGKKGCKSLRCFPNNIHFRSPISLNFSYCVNFKEFPQISG--NVRELYLRGTPIEYVPSSIDCLAKLE 594 (1094)
Q Consensus 517 L~L~~n~i~~l~~~~~~l~~L~~~~~~~~~~~l~~L~Ls~~~~l~~~p~~~~--~L~~L~L~~~~l~~lp~~i~~L~~L~ 594 (1094)
|++++|.+..+. .+..+++|+ .|+++++ +..++.+.. +|++|++++|.+..++ .+..+++|+
T Consensus 139 L~l~~n~l~~~~-~~~~l~~L~------------~L~l~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~ 202 (466)
T 1o6v_A 139 LELSSNTISDIS-ALSGLTSLQ------------QLSFGNQ--VTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLE 202 (466)
T ss_dssp EEEEEEEECCCG-GGTTCTTCS------------EEEEEES--CCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCS
T ss_pred EECCCCccCCCh-hhccCCccc------------EeecCCc--ccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCC
Confidence 999999998865 467777777 8888643 333333332 8999999999999886 488999999
Q ss_pred eeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccCcccccccchhhccCCCcEEecCCCCC
Q 001348 595 YLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEGTAITELPSSIEYLGGLTTLNLTGCSK 674 (1094)
Q Consensus 595 ~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~ 674 (1094)
+|++++|.+.+..| ++.+++|++|++++|...+ + ..+..+++|++|++++|.++.++. +..+++|+.|++++|.+
T Consensus 203 ~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l 277 (466)
T 1o6v_A 203 SLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQI 277 (466)
T ss_dssp EEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCC
T ss_pred EEEecCCccccccc--ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCcc
Confidence 99999999877655 7789999999999988665 3 468899999999999999998876 89999999999999987
Q ss_pred CCCCCccccCCCcccEEecCCccCccCCccccCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeCCCCCCCCCCccccCC
Q 001348 675 LDNLPENLGNLKSLKMLCANESAISQLPSSITNLNELQVVWCSGCRGLILPPSFSGLSYLTELDLSCCNLIEIPQDIGCL 754 (1094)
Q Consensus 675 ~~~lp~~l~~l~~L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l 754 (1094)
.+..+ +..+++|+.|++++|.++.++. +..+++|+.|++++|.....++ +..+++|+.|++++|.++.++ .+..+
T Consensus 278 ~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l 352 (466)
T 1o6v_A 278 SNISP--LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVS-SLANL 352 (466)
T ss_dssp CCCGG--GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCG-GGTTC
T ss_pred Ccccc--ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCch-hhccC
Confidence 66443 8899999999999999998866 8899999999999999777665 789999999999999999884 68899
Q ss_pred CCCCeeecCCCCCcccchhhcCCCCCCEEEccCCCCCC
Q 001348 755 SLLRSLDLRKNNFEYLPASMKHLSKLKSLDLSCCNMLQ 792 (1094)
Q Consensus 755 ~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~~~~l~ 792 (1094)
++|+.|++++|+++.+++ +..+++|+.|++++|++.+
T Consensus 353 ~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 353 TNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp TTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred CCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence 999999999999998876 8999999999999998776
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=1.6e-27 Score=281.64 Aligned_cols=339 Identities=21% Similarity=0.201 Sum_probs=250.7
Q ss_pred cccccccccccCccccCCCCCceEEEEeCCCCCCccccccccccCCccccCcc------------cccEEEecCCCCCCC
Q 001348 438 LDLSKIRDINLNPQAFANMPNLRFLKFYMPKLFGISDMVCKLHLPQGLQYLSD------------ELRYLHWHGYPLKML 505 (1094)
Q Consensus 438 ldls~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~~~~~~~~~~l~~~l~~l~~------------~Lr~L~l~~~~l~~l 505 (1094)
++++.+.. .--|.+|++|++|++|++++|.+.+ .+|.++..+.. ++++|++++|.++.+
T Consensus 16 L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~--------~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l 86 (454)
T 1jl5_A 16 PLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWER--------NAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL 86 (454)
T ss_dssp -------------------CCHHHHHHHHHHHHH--------TSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC
T ss_pred hhcccCch-hhCChhHhcccchhhhhccCCcccc--------cCCcccccchhcchhhhhhhhccCCCEEEecCCccccC
Confidence 34444433 2336678999999999998887643 56666665542 369999999999999
Q ss_pred CCCCCccccceeeccccccccccccCCCCCcCcccCCCCCCCCCeEEeccCCCCCcccCCccCCccEEEeccCCCCcccc
Q 001348 506 PSNFTPENLIELNLLYSRIEQLWKGKKGCKSLRCFPNNIHFRSPISLNFSYCVNFKEFPQISGNVRELYLRGTPIEYVPS 585 (1094)
Q Consensus 506 p~~~~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~~~~~~~~~~l~~L~Ls~~~~l~~~p~~~~~L~~L~L~~~~l~~lp~ 585 (1094)
|.. +.+|++|++++|.++.++.. +.+|+ .|++++| .+..+|....+|++|++++|.++.+|
T Consensus 87 p~~--~~~L~~L~l~~n~l~~lp~~---~~~L~------------~L~l~~n-~l~~l~~~~~~L~~L~L~~n~l~~lp- 147 (454)
T 1jl5_A 87 PEL--PPHLESLVASCNSLTELPEL---PQSLK------------SLLVDNN-NLKALSDLPPLLEYLGVSNNQLEKLP- 147 (454)
T ss_dssp CSC--CTTCSEEECCSSCCSSCCCC---CTTCC------------EEECCSS-CCSCCCSCCTTCCEEECCSSCCSSCC-
T ss_pred CCC--cCCCCEEEccCCcCCccccc---cCCCc------------EEECCCC-ccCcccCCCCCCCEEECcCCCCCCCc-
Confidence 873 57999999999999886543 35555 9999887 46667766679999999999999998
Q ss_pred ccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccCcccccccchhhccCCCc
Q 001348 586 SIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEGTAITELPSSIEYLGGLT 665 (1094)
Q Consensus 586 ~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~ 665 (1094)
.++.+++|++|++++|.+.+ +|.. ..+|++|++++|.+.+ +| .++++++|++|++++|.++.+|... ++|+
T Consensus 148 ~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~ 218 (454)
T 1jl5_A 148 ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLP---LSLE 218 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCC---TTCC
T ss_pred ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCc---Cccc
Confidence 59999999999999998765 6653 4589999999987665 66 5889999999999999999887643 5899
Q ss_pred EEecCCCCCCCCCCccccCCCcccEEecCCccCccCCccccCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeCCCCCCC
Q 001348 666 TLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQLPSSITNLNELQVVWCSGCRGLILPPSFSGLSYLTELDLSCCNLI 745 (1094)
Q Consensus 666 ~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~ 745 (1094)
+|++++|.+. .+|. ++.+++|+.|++++|.++.+|.. +++|+.|++++|....+|.. +++|+.|++++|.++
T Consensus 219 ~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~ 290 (454)
T 1jl5_A 219 SIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFS 290 (454)
T ss_dssp EEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS
T ss_pred EEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccccCcc---cCcCCEEECcCCccC
Confidence 9999998765 7774 88999999999999999888763 47899999999988777764 478999999999888
Q ss_pred CCCccccCCCCCCeeecCCCCCcccchhhcCCCCCCEEEccCCCCCCCCCccccccccccccccccccccCCCCcchhhh
Q 001348 746 EIPQDIGCLSLLRSLDLRKNNFEYLPASMKHLSKLKSLDLSCCNMLQSLPELPLQLKFLQAKDCKQLQSLPEIPSCLEMV 825 (1094)
Q Consensus 746 ~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~~~c~~l~~~~~~p~~l~~l 825 (1094)
.+|.. .++|+.|++++|+++.++.. .++|+.|++++|++.+ +|..+++|+.|++.++ .+..+|..+..++.+
T Consensus 291 ~l~~~---~~~L~~L~l~~N~l~~i~~~---~~~L~~L~Ls~N~l~~-lp~~~~~L~~L~L~~N-~l~~lp~~l~~L~~L 362 (454)
T 1jl5_A 291 GLSEL---PPNLYYLNASSNEIRSLCDL---PPSLEELNVSNNKLIE-LPALPPRLERLIASFN-HLAEVPELPQNLKQL 362 (454)
T ss_dssp EESCC---CTTCCEEECCSSCCSEECCC---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSS-CCSCCCCCCTTCCEE
T ss_pred cccCc---CCcCCEEECcCCcCCcccCC---cCcCCEEECCCCcccc-ccccCCcCCEEECCCC-ccccccchhhhccEE
Confidence 76532 36788888888888876631 2578888888887665 7777778888887766 455555444444444
Q ss_pred cccc
Q 001348 826 DVCK 829 (1094)
Q Consensus 826 ~~~~ 829 (1094)
++..
T Consensus 363 ~L~~ 366 (454)
T 1jl5_A 363 HVEY 366 (454)
T ss_dssp ECCS
T ss_pred ECCC
Confidence 4443
No 28
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=1.4e-27 Score=290.87 Aligned_cols=346 Identities=17% Similarity=0.194 Sum_probs=240.9
Q ss_pred ccccccccccCccccCCCCCceEEEEeCCCCCCccccccccccCCccccCcccccEEEecCCCCCCCCC-CC-Cccccce
Q 001348 439 DLSKIRDINLNPQAFANMPNLRFLKFYMPKLFGISDMVCKLHLPQGLQYLSDELRYLHWHGYPLKMLPS-NF-TPENLIE 516 (1094)
Q Consensus 439 dls~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~ 516 (1094)
|.+......++...+ ++|+.|++++|.+++ ..|..+..+ ++|++|++++|.++.++. .+ .+.+|++
T Consensus 11 ~~~~~~l~~ip~~~~---~~L~~L~Ls~n~l~~--------~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 78 (549)
T 2z81_A 11 DGRSRSFTSIPSGLT---AAMKSLDLSFNKITY--------IGHGDLRAC-ANLQVLILKSSRINTIEGDAFYSLGSLEH 78 (549)
T ss_dssp ECTTSCCSSCCSCCC---TTCCEEECCSSCCCE--------ECSSTTSSC-TTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ECCCCccccccccCC---CCccEEECcCCccCc--------cChhhhhcC-CcccEEECCCCCcCccChhhccccccCCE
Confidence 444444444444333 689999999998864 224455555 479999999999998874 34 5899999
Q ss_pred eecccccccccccc-CCCCCcCcccCCCCCCCCCeEEeccCCCCCc-ccCCccC---CccEEEeccCC-CCccc-ccccc
Q 001348 517 LNLLYSRIEQLWKG-KKGCKSLRCFPNNIHFRSPISLNFSYCVNFK-EFPQISG---NVRELYLRGTP-IEYVP-SSIDC 589 (1094)
Q Consensus 517 L~L~~n~i~~l~~~-~~~l~~L~~~~~~~~~~~l~~L~Ls~~~~l~-~~p~~~~---~L~~L~L~~~~-l~~lp-~~i~~ 589 (1094)
|+|++|+++.+... +..+++|+ +|++++|.... ..|..+. +|++|++++|. +..+| ..+..
T Consensus 79 L~Ls~n~l~~~~~~~~~~l~~L~------------~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~ 146 (549)
T 2z81_A 79 LDLSDNHLSSLSSSWFGPLSSLK------------YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG 146 (549)
T ss_dssp EECTTSCCCSCCHHHHTTCTTCC------------EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred EECCCCccCccCHHHhccCCCCc------------EEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhc
Confidence 99999999988665 78888888 99999996432 2343333 89999999987 67786 57899
Q ss_pred ccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchh-hcccCccceeeccCccccccc-------------
Q 001348 590 LAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEI-LEKMGCLEDIDLEGTAITELP------------- 655 (1094)
Q Consensus 590 L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~-l~~l~~L~~L~L~~~~i~~lp------------- 655 (1094)
+++|++|++++|.+.+..|..++++++|++|++++|... .+|.. +..+++|++|++++|.++.++
T Consensus 147 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L 225 (549)
T 2z81_A 147 LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPM 225 (549)
T ss_dssp CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCC
T ss_pred ccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcc
Confidence 999999999999999999999999999999999998764 44444 467899999999999887642
Q ss_pred -------------------chhhccCCCcEEecCCCCCCCC--CC-------cc--------------------------
Q 001348 656 -------------------SSIEYLGGLTTLNLTGCSKLDN--LP-------EN-------------------------- 681 (1094)
Q Consensus 656 -------------------~~l~~l~~L~~L~L~~~~~~~~--lp-------~~-------------------------- 681 (1094)
..+..+++|+.|++++|...+. ++ ..
T Consensus 226 ~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~ 305 (549)
T 2z81_A 226 KKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTV 305 (549)
T ss_dssp CEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHH
T ss_pred cceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhh
Confidence 1123344555555555443210 00 00
Q ss_pred ccCCCcccEEecCCccCccCCccc-cCCCCCcEEEccCCCCCC-C---CCCCCCCCCCCEEeCCCCCCCCCCc---cccC
Q 001348 682 LGNLKSLKMLCANESAISQLPSSI-TNLNELQVVWCSGCRGLI-L---PPSFSGLSYLTELDLSCCNLIEIPQ---DIGC 753 (1094)
Q Consensus 682 l~~l~~L~~L~l~~~~i~~~p~~l-~~l~~L~~L~l~~~~~~~-l---p~~l~~l~~L~~L~Ls~n~l~~lp~---~l~~ 753 (1094)
...+.+|+.|++++|.++.+|..+ ..+++|+.|++++|.... . +..+..+++|+.|+|++|+++.++. .++.
T Consensus 306 ~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 385 (549)
T 2z81_A 306 YSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLT 385 (549)
T ss_dssp HHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGG
T ss_pred hhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhc
Confidence 111245666677777777676665 457777777777776543 1 2335667777777777777776542 3666
Q ss_pred CCCCCeeecCCCCCcccchhhcCCCCCCEEEccCCCCCCCCCcccccccccccccc
Q 001348 754 LSLLRSLDLRKNNFEYLPASMKHLSKLKSLDLSCCNMLQSLPELPLQLKFLQAKDC 809 (1094)
Q Consensus 754 l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~~~c 809 (1094)
+++|+.|+|++|+++.+|..+..+++|++|+|++|.+...-...+.+|+.|++.+|
T Consensus 386 l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N 441 (549)
T 2z81_A 386 LKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNN 441 (549)
T ss_dssp CTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSS
T ss_pred CCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchhcCCceEEECCCC
Confidence 77777777777777777777777777777777777654322233455666666555
No 29
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=2.9e-27 Score=302.10 Aligned_cols=361 Identities=20% Similarity=0.188 Sum_probs=195.6
Q ss_pred eecccccc-cccccCccccCCCCCceEEEEeCCCCCCccccccccccCCccccCcccccEEEecCCCCCC-CCCC--C-C
Q 001348 436 IFLDLSKI-RDINLNPQAFANMPNLRFLKFYMPKLFGISDMVCKLHLPQGLQYLSDELRYLHWHGYPLKM-LPSN--F-T 510 (1094)
Q Consensus 436 i~ldls~~-~~~~l~~~~f~~l~~Lr~L~l~~n~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~-lp~~--~-~ 510 (1094)
..+|++.+ ....+.+.+|.++++|++|++++|.+.+ ..|..+..++ +|++|++++|.++. +|.. + .
T Consensus 51 ~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~--------~~p~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~ 121 (844)
T 3j0a_A 51 QLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF--------LHPDAFQGLF-HLFELRLYFCGLSDAVLKDGYFRN 121 (844)
T ss_dssp SEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE--------ECTTSSCSCS-SCCCEECTTCCCSSCCSTTCCCSS
T ss_pred eEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc--------cCHhHccCCc-ccCEeeCcCCCCCcccccCccccc
Confidence 35666665 3446668899999999999999998854 3466666664 79999999999976 4443 3 5
Q ss_pred ccccceeecccccccccc--ccCCCCCcCcccC---CCC---------CC--CCCeEEeccCCCCCcccCCccC------
Q 001348 511 PENLIELNLLYSRIEQLW--KGKKGCKSLRCFP---NNI---------HF--RSPISLNFSYCVNFKEFPQISG------ 568 (1094)
Q Consensus 511 ~~~L~~L~L~~n~i~~l~--~~~~~l~~L~~~~---~~~---------~~--~~l~~L~Ls~~~~l~~~p~~~~------ 568 (1094)
+.+|++|+|++|.++.+. ..+..+++|+.+. +.+ .+ .+++.|++++|......|....
T Consensus 122 L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 201 (844)
T 3j0a_A 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF 201 (844)
T ss_dssp CSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTT
T ss_pred cCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCcc
Confidence 889999999999998763 3467777777110 000 00 2333444444432222221111
Q ss_pred ---CccEEEeccCCCC-ccccccc------------------------------------c--ccccceeeccccccccc
Q 001348 569 ---NVRELYLRGTPIE-YVPSSID------------------------------------C--LAKLEYLDLGHCTILES 606 (1094)
Q Consensus 569 ---~L~~L~L~~~~l~-~lp~~i~------------------------------------~--L~~L~~L~L~~~~~~~~ 606 (1094)
+|+.|+|++|.+. .+|..+. . .++|+.|+|++|.+.+.
T Consensus 202 ~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~ 281 (844)
T 3j0a_A 202 RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSL 281 (844)
T ss_dssp TTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEE
T ss_pred ccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCccccc
Confidence 2555555555433 1111111 0 13455555555555555
Q ss_pred chhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccCcccccc-cchhhccCCCcEEecCCCCCCCCCCccccCC
Q 001348 607 ISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEGTAITEL-PSSIEYLGGLTTLNLTGCSKLDNLPENLGNL 685 (1094)
Q Consensus 607 lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l 685 (1094)
.|..+..+++|+.|+|++|.+.+..|..+.++++|++|+|++|.++.+ |..+..+++|+.|++++|.+....+..+.++
T Consensus 282 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l 361 (844)
T 3j0a_A 282 NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL 361 (844)
T ss_dssp CSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSC
T ss_pred ChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCC
Confidence 555555555566666655555555555555555666666666555544 3455555566666666555444444455555
Q ss_pred CcccEEecCCccCccCCccccCCCCCcEEEccCCCCCCCCCC----------------------CCCCCCCCEEeCCCCC
Q 001348 686 KSLKMLCANESAISQLPSSITNLNELQVVWCSGCRGLILPPS----------------------FSGLSYLTELDLSCCN 743 (1094)
Q Consensus 686 ~~L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~~~~lp~~----------------------l~~l~~L~~L~Ls~n~ 743 (1094)
++|+.|++++|.++.++. +++|+.|++++|....+|.. +.++++|+.|+|++|+
T Consensus 362 ~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~ 437 (844)
T 3j0a_A 362 EKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNR 437 (844)
T ss_dssp CCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCC
T ss_pred CCCCEEECCCCCCCcccC----CCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCc
Confidence 666666666655554432 44555555555554444432 1134445555555554
Q ss_pred CCCCCcc--ccCCCCCCeeecCCCCCcccc------hhhcCCCCCCEEEccCCCCCCCCCcccccccccccccc
Q 001348 744 LIEIPQD--IGCLSLLRSLDLRKNNFEYLP------ASMKHLSKLKSLDLSCCNMLQSLPELPLQLKFLQAKDC 809 (1094)
Q Consensus 744 l~~lp~~--l~~l~~L~~L~L~~n~l~~lp------~~l~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~~~c 809 (1094)
++.++.. +..+++|+.|+|++|.++.++ ..+..+++|+.|+|++|.+.+..|..+..+..|...++
T Consensus 438 l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 511 (844)
T 3j0a_A 438 FSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSL 511 (844)
T ss_dssp CCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEE
T ss_pred ccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeEC
Confidence 4433221 333445555555555543221 23445555555555555555444444433333333333
No 30
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=1.5e-27 Score=288.56 Aligned_cols=341 Identities=16% Similarity=0.113 Sum_probs=265.1
Q ss_pred ecccccccccccCccccCCCCCceEEEEeCCCCCCccccccccccCCccccCcccccEEEecCCCCCCC-CCCC-Ccccc
Q 001348 437 FLDLSKIRDINLNPQAFANMPNLRFLKFYMPKLFGISDMVCKLHLPQGLQYLSDELRYLHWHGYPLKML-PSNF-TPENL 514 (1094)
Q Consensus 437 ~ldls~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~l-p~~~-~~~~L 514 (1094)
.+|++.+....++...+ ++|+.|++++|.+.++ .|..+..+ .+|++|++++|.++.+ |..+ .+.+|
T Consensus 4 ~l~ls~n~l~~ip~~~~---~~L~~L~Ls~n~i~~~--------~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L 71 (520)
T 2z7x_B 4 LVDRSKNGLIHVPKDLS---QKTTILNISQNYISEL--------WTSDILSL-SKLRILIISHNRIQYLDISVFKFNQEL 71 (520)
T ss_dssp EEECTTSCCSSCCCSCC---TTCSEEECCSSCCCCC--------CHHHHTTC-TTCCEEECCSSCCCEEEGGGGTTCTTC
T ss_pred eEecCCCCccccccccc---ccccEEECCCCccccc--------Chhhcccc-ccccEEecCCCccCCcChHHhhcccCC
Confidence 46777766555554433 7899999999987541 12344455 4799999999999887 4444 58899
Q ss_pred ceeeccccccccccccCCCCCcCcccCCCCCCCCCeEEeccCCCCCc-ccCCccC---CccEEEeccCCCCccccccccc
Q 001348 515 IELNLLYSRIEQLWKGKKGCKSLRCFPNNIHFRSPISLNFSYCVNFK-EFPQISG---NVRELYLRGTPIEYVPSSIDCL 590 (1094)
Q Consensus 515 ~~L~L~~n~i~~l~~~~~~l~~L~~~~~~~~~~~l~~L~Ls~~~~l~-~~p~~~~---~L~~L~L~~~~l~~lp~~i~~L 590 (1094)
++|+|++|+|+.++.. .+++|+ +|++++|.... .+|..++ +|++|+|++|.+.. ..+..+
T Consensus 72 ~~L~Ls~N~l~~lp~~--~l~~L~------------~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l 135 (520)
T 2z7x_B 72 EYLDLSHNKLVKISCH--PTVNLK------------HLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPI 135 (520)
T ss_dssp CEEECCSSCCCEEECC--CCCCCS------------EEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGG
T ss_pred CEEecCCCceeecCcc--ccCCcc------------EEeccCCccccccchhhhccCCcceEEEecCcccch--hhcccc
Confidence 9999999999887766 677777 99999986443 3454443 89999999998876 456777
Q ss_pred ccc--ceeecccccc--cccchhhhhc--------------------------CCcccEEeccCCc-------ccCccch
Q 001348 591 AKL--EYLDLGHCTI--LESISTSICK--------------------------LKSLLKLCLDNCS-------KLESFPE 633 (1094)
Q Consensus 591 ~~L--~~L~L~~~~~--~~~lp~~i~~--------------------------l~~L~~L~L~~~~-------~~~~~p~ 633 (1094)
++| ++|++++|.+ .+..|..+.. +++|+.|++++|. ..+.+|
T Consensus 136 ~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~- 214 (520)
T 2z7x_B 136 AHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA- 214 (520)
T ss_dssp TTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-
T ss_pred ccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-
Confidence 888 9999999887 6666665554 6677777777764 222222
Q ss_pred hhcc---------------------------cCccceeeccCcccc-cccchh-----hccCCCcEEecCCCCCCCCCC-
Q 001348 634 ILEK---------------------------MGCLEDIDLEGTAIT-ELPSSI-----EYLGGLTTLNLTGCSKLDNLP- 679 (1094)
Q Consensus 634 ~l~~---------------------------l~~L~~L~L~~~~i~-~lp~~l-----~~l~~L~~L~L~~~~~~~~lp- 679 (1094)
.++. +++|++|++++|.++ .+|..+ +.+++|+.+++++|.. .+|
T Consensus 215 ~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~ 292 (520)
T 2z7x_B 215 KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQ 292 (520)
T ss_dssp GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCT
T ss_pred hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecch
Confidence 2222 236888888888888 889888 8999999999999887 677
Q ss_pred ccccCC---CcccEEecCCccCccCCccccCCCCCcEEEccCCCCCC-CCCCCCCCCCCCEEeCCCCCCCC---CCcccc
Q 001348 680 ENLGNL---KSLKMLCANESAISQLPSSITNLNELQVVWCSGCRGLI-LPPSFSGLSYLTELDLSCCNLIE---IPQDIG 752 (1094)
Q Consensus 680 ~~l~~l---~~L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~Ls~n~l~~---lp~~l~ 752 (1094)
..+..+ .+|+.|++++|.+..++. ...+++|+.|++++|.... .|..+..+++|++|+|++|+++. +|..++
T Consensus 293 ~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~ 371 (520)
T 2z7x_B 293 SYIYEIFSNMNIKNFTVSGTRMVHMLC-PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTT 371 (520)
T ss_dssp HHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHT
T ss_pred hhhhcccccCceeEEEcCCCccccccc-hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHh
Confidence 455554 679999999999876642 2688999999999999665 78889999999999999999996 456789
Q ss_pred CCCCCCeeecCCCCCcc-cchh-hcCCCCCCEEEccCCCCCCCCCccc-ccccccccccc
Q 001348 753 CLSLLRSLDLRKNNFEY-LPAS-MKHLSKLKSLDLSCCNMLQSLPELP-LQLKFLQAKDC 809 (1094)
Q Consensus 753 ~l~~L~~L~L~~n~l~~-lp~~-l~~l~~L~~L~L~~~~~l~~lp~~~-~~L~~L~~~~c 809 (1094)
.+++|+.|+|++|.++. +|.. +..+++|+.|+|++|.+.+.+|..+ .+|+.|++.+|
T Consensus 372 ~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N 431 (520)
T 2z7x_B 372 QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN 431 (520)
T ss_dssp TCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS
T ss_pred hCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC
Confidence 99999999999999997 8875 7889999999999999988887655 68888888877
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=3.7e-27 Score=280.05 Aligned_cols=293 Identities=21% Similarity=0.179 Sum_probs=188.4
Q ss_pred CcccccEEEecCCCCCCCC-CCC-Cccccceeeccccccc-cc-cccCCCCCcCcccCCCCCCCCCeEEeccCCCCCccc
Q 001348 488 LSDELRYLHWHGYPLKMLP-SNF-TPENLIELNLLYSRIE-QL-WKGKKGCKSLRCFPNNIHFRSPISLNFSYCVNFKEF 563 (1094)
Q Consensus 488 l~~~Lr~L~l~~~~l~~lp-~~~-~~~~L~~L~L~~n~i~-~l-~~~~~~l~~L~~~~~~~~~~~l~~L~Ls~~~~l~~~ 563 (1094)
+|++|++|++++|.++.++ ..+ .+.+|++|++++|.+. .+ ...+..+++|+ +|++++|......
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~------------~L~Ls~n~l~~~~ 95 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLI------------ILKLDYNQFLQLE 95 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCC------------EEECTTCTTCEEC
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCC------------EEeCCCCccCccC
Confidence 5578999999999998874 444 5889999999999886 33 34467777777 9999998755554
Q ss_pred CCccC---CccEEEeccCCCCc-cccc--cccccccceeecccccccccchhh-hhcCCcccEEeccCCcccCccchhhc
Q 001348 564 PQISG---NVRELYLRGTPIEY-VPSS--IDCLAKLEYLDLGHCTILESISTS-ICKLKSLLKLCLDNCSKLESFPEILE 636 (1094)
Q Consensus 564 p~~~~---~L~~L~L~~~~l~~-lp~~--i~~L~~L~~L~L~~~~~~~~lp~~-i~~l~~L~~L~L~~~~~~~~~p~~l~ 636 (1094)
|..+. +|++|+|++|.+.. +|.. ++.+++|++|+|++|.+.+..|.. +.++++|++|++++|.+.+..|..+.
T Consensus 96 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 175 (455)
T 3v47_A 96 TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLL 175 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSG
T ss_pred hhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhh
Confidence 55444 89999999998885 3444 888999999999999988877766 78899999999999988888887777
Q ss_pred cc--CccceeeccCcccccccch---------hhccCCCcEEecCCCCCCCCCCccccCC---C----------------
Q 001348 637 KM--GCLEDIDLEGTAITELPSS---------IEYLGGLTTLNLTGCSKLDNLPENLGNL---K---------------- 686 (1094)
Q Consensus 637 ~l--~~L~~L~L~~~~i~~lp~~---------l~~l~~L~~L~L~~~~~~~~lp~~l~~l---~---------------- 686 (1094)
++ .+|+.|++++|.+..++.. +..+++|++|++++|.+.+..|..+..+ +
T Consensus 176 ~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 255 (455)
T 3v47_A 176 NFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS 255 (455)
T ss_dssp GGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC
T ss_pred ccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccc
Confidence 66 5677777777777655532 2345667777777776655444433222 3
Q ss_pred --------------------cccEEecCCccCccC-CccccCCCCCcEEEccCCCCCCC-CCCCCCCCCCCEEeCCCCCC
Q 001348 687 --------------------SLKMLCANESAISQL-PSSITNLNELQVVWCSGCRGLIL-PPSFSGLSYLTELDLSCCNL 744 (1094)
Q Consensus 687 --------------------~L~~L~l~~~~i~~~-p~~l~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~Ls~n~l 744 (1094)
+|+.|++++|.++.+ |..+..+++|+.|++++|....+ |..+.++++|++|+|++|.+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 335 (455)
T 3v47_A 256 FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL 335 (455)
T ss_dssp TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred cchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCcc
Confidence 444555555544432 33444455555555555544333 22444455555555555555
Q ss_pred CCC-CccccCCCCCCeeecCCCCCccc-chhhcCCCCCCEEEccCCCCCC
Q 001348 745 IEI-PQDIGCLSLLRSLDLRKNNFEYL-PASMKHLSKLKSLDLSCCNMLQ 792 (1094)
Q Consensus 745 ~~l-p~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~~~~l~ 792 (1094)
+.+ |..++.+++|+.|+|++|+++.+ |..+..+++|++|+|++|++.+
T Consensus 336 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 385 (455)
T 3v47_A 336 GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS 385 (455)
T ss_dssp CEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcccc
Confidence 443 23344455555555555555433 3344445555555555554443
No 32
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=8.9e-27 Score=266.31 Aligned_cols=297 Identities=21% Similarity=0.251 Sum_probs=204.0
Q ss_pred cccccccccccCccccCCCCCceEEEEeCCCCCCccccccccccCCccccCcccccEEEecCCCCCCCCCCCCcccccee
Q 001348 438 LDLSKIRDINLNPQAFANMPNLRFLKFYMPKLFGISDMVCKLHLPQGLQYLSDELRYLHWHGYPLKMLPSNFTPENLIEL 517 (1094)
Q Consensus 438 ldls~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L 517 (1094)
++++......+ ..|..+++|++|++++|.+.++ +. +..+ ++|++|++++|.++.+|....+.+|++|
T Consensus 49 L~l~~~~i~~~--~~~~~~~~L~~L~l~~n~i~~~---------~~-~~~l-~~L~~L~L~~n~i~~~~~~~~l~~L~~L 115 (347)
T 4fmz_A 49 LVVAGEKVASI--QGIEYLTNLEYLNLNGNQITDI---------SP-LSNL-VKLTNLYIGTNKITDISALQNLTNLREL 115 (347)
T ss_dssp EECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCC---------GG-GTTC-TTCCEEECCSSCCCCCGGGTTCTTCSEE
T ss_pred EEEeCCccccc--hhhhhcCCccEEEccCCccccc---------hh-hhcC-CcCCEEEccCCcccCchHHcCCCcCCEE
Confidence 44444444444 3488999999999999988642 22 4444 4799999999999999876679999999
Q ss_pred eccccccccccccCCCCCcCcccCCCCCCCCCeEEeccCCCCCcccCCccCCccEEEeccCCCCccccccccccccceee
Q 001348 518 NLLYSRIEQLWKGKKGCKSLRCFPNNIHFRSPISLNFSYCVNFKEFPQISGNVRELYLRGTPIEYVPSSIDCLAKLEYLD 597 (1094)
Q Consensus 518 ~L~~n~i~~l~~~~~~l~~L~~~~~~~~~~~l~~L~Ls~~~~l~~~p~~~~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~ 597 (1094)
++++|.+..+.. +..+++|+ .|++++|..+..++ .+..+++|++|+
T Consensus 116 ~l~~n~i~~~~~-~~~l~~L~------------~L~l~~n~~~~~~~---------------------~~~~l~~L~~L~ 161 (347)
T 4fmz_A 116 YLNEDNISDISP-LANLTKMY------------SLNLGANHNLSDLS---------------------PLSNMTGLNYLT 161 (347)
T ss_dssp ECTTSCCCCCGG-GTTCTTCC------------EEECTTCTTCCCCG---------------------GGTTCTTCCEEE
T ss_pred ECcCCcccCchh-hccCCcee------------EEECCCCCCccccc---------------------chhhCCCCcEEE
Confidence 999999987654 55555555 66666665444333 345555566666
Q ss_pred cccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccCcccccccchhhccCCCcEEecCCCCCCCC
Q 001348 598 LGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEGTAITELPSSIEYLGGLTTLNLTGCSKLDN 677 (1094)
Q Consensus 598 L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~ 677 (1094)
+++|.+....+ +..+++|++|++++|.+... +. +..+++|+.|++++|.++.++. +..+++|++|++++|.+...
T Consensus 162 l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~ 236 (347)
T 4fmz_A 162 VTESKVKDVTP--IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDL 236 (347)
T ss_dssp CCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC
T ss_pred ecCCCcCCchh--hccCCCCCEEEccCCccccc-cc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCC
Confidence 65555433222 55566666666666554332 22 5556666666666666665554 56666666666666654433
Q ss_pred CCccccCCCcccEEecCCccCccCCccccCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeCCCCCCCCC-CccccCCCC
Q 001348 678 LPENLGNLKSLKMLCANESAISQLPSSITNLNELQVVWCSGCRGLILPPSFSGLSYLTELDLSCCNLIEI-PQDIGCLSL 756 (1094)
Q Consensus 678 lp~~l~~l~~L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~ 756 (1094)
.+ +..+++|+.|++++|.++.+ +.+..+++|+.|++++|....++ .+..+++|+.|++++|.++.. |..++.+++
T Consensus 237 ~~--~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 312 (347)
T 4fmz_A 237 SP--LANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTN 312 (347)
T ss_dssp GG--GTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTT
T ss_pred cc--hhcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhcccc
Confidence 22 66667777777777766665 35667777777777777766653 477888999999999998864 455888999
Q ss_pred CCeeecCCCCCcccchhhcCCCCCCEEEccCCCCC
Q 001348 757 LRSLDLRKNNFEYLPASMKHLSKLKSLDLSCCNML 791 (1094)
Q Consensus 757 L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~~~~l 791 (1094)
|+.|+|++|.++.++. +..+++|+.|++++|++.
T Consensus 313 L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 313 LTTLFLSQNHITDIRP-LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CSEEECCSSSCCCCGG-GGGCTTCSEESSSCC---
T ss_pred CCEEEccCCccccccC-hhhhhccceeehhhhccc
Confidence 9999999999998876 888999999999999764
No 33
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=3e-26 Score=270.69 Aligned_cols=289 Identities=23% Similarity=0.231 Sum_probs=241.7
Q ss_pred CCCceEEEEeCCCCCCccccccccccCCccccCcccccEEEecCCCCCCCCCCCCccccceeeccccccccccccCCCCC
Q 001348 456 MPNLRFLKFYMPKLFGISDMVCKLHLPQGLQYLSDELRYLHWHGYPLKMLPSNFTPENLIELNLLYSRIEQLWKGKKGCK 535 (1094)
Q Consensus 456 l~~Lr~L~l~~n~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~i~~l~~~~~~l~ 535 (1094)
.++|+.|++++|.+++ +|.. +.+|++|++++|.++.+|.. +.+|++|++++|+++.++ .+..++
T Consensus 90 ~~~L~~L~l~~n~l~~---------lp~~----~~~L~~L~l~~n~l~~l~~~--~~~L~~L~L~~n~l~~lp-~~~~l~ 153 (454)
T 1jl5_A 90 PPHLESLVASCNSLTE---------LPEL----PQSLKSLLVDNNNLKALSDL--PPLLEYLGVSNNQLEKLP-ELQNSS 153 (454)
T ss_dssp CTTCSEEECCSSCCSS---------CCCC----CTTCCEEECCSSCCSCCCSC--CTTCCEEECCSSCCSSCC-CCTTCT
T ss_pred cCCCCEEEccCCcCCc---------cccc----cCCCcEEECCCCccCcccCC--CCCCCEEECcCCCCCCCc-ccCCCC
Confidence 3689999999998854 3332 35899999999999998864 379999999999999876 577888
Q ss_pred cCcccCCCCCCCCCeEEeccCCCCCcccCCccCCccEEEeccCCCCccccccccccccceeecccccccccchhhhhcCC
Q 001348 536 SLRCFPNNIHFRSPISLNFSYCVNFKEFPQISGNVRELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILESISTSICKLK 615 (1094)
Q Consensus 536 ~L~~~~~~~~~~~l~~L~Ls~~~~l~~~p~~~~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~ 615 (1094)
+|+ .|++++|. +..+|....+|++|++++|.+..+| .++.+++|++|++++|.+.+ +|.. ..
T Consensus 154 ~L~------------~L~l~~N~-l~~lp~~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~ 215 (454)
T 1jl5_A 154 FLK------------IIDVDNNS-LKKLPDLPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LPDL---PL 215 (454)
T ss_dssp TCC------------EEECCSSC-CSCCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCCC---CT
T ss_pred CCC------------EEECCCCc-CcccCCCcccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc-CCCC---cC
Confidence 888 99999985 6678888889999999999999998 69999999999999998765 5542 36
Q ss_pred cccEEeccCCcccCccchhhcccCccceeeccCcccccccchhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCC
Q 001348 616 SLLKLCLDNCSKLESFPEILEKMGCLEDIDLEGTAITELPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANE 695 (1094)
Q Consensus 616 ~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~ 695 (1094)
+|++|++++|.+. .+|. ++.+++|++|++++|.++.+|.. +++|+.|++++|.+.+ +|.. +++|+.|++++
T Consensus 216 ~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~ 286 (454)
T 1jl5_A 216 SLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSE 286 (454)
T ss_dssp TCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCS
T ss_pred cccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcC
Confidence 9999999999766 7774 88999999999999999998864 4899999999987665 6654 48899999999
Q ss_pred ccCccCCccccCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeCCCCCCCCCCccccCCCCCCeeecCCCCCcccchhhc
Q 001348 696 SAISQLPSSITNLNELQVVWCSGCRGLILPPSFSGLSYLTELDLSCCNLIEIPQDIGCLSLLRSLDLRKNNFEYLPASMK 775 (1094)
Q Consensus 696 ~~i~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~ 775 (1094)
|.++.+|.. .++|+.|++++|....++.. .++|+.|++++|+++.+|.. +++|+.|++++|+++.+|.
T Consensus 287 N~l~~l~~~---~~~L~~L~l~~N~l~~i~~~---~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~l~~lp~--- 354 (454)
T 1jl5_A 287 NIFSGLSEL---PPNLYYLNASSNEIRSLCDL---PPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLAEVPE--- 354 (454)
T ss_dssp SCCSEESCC---CTTCCEEECCSSCCSEECCC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---
T ss_pred CccCcccCc---CCcCCEEECcCCcCCcccCC---cCcCCEEECCCCcccccccc---CCcCCEEECCCCccccccc---
Confidence 999887542 27899999999987665531 25899999999999998865 5899999999999999997
Q ss_pred CCCCCCEEEccCCCCCC--CCCcccc
Q 001348 776 HLSKLKSLDLSCCNMLQ--SLPELPL 799 (1094)
Q Consensus 776 ~l~~L~~L~L~~~~~l~--~lp~~~~ 799 (1094)
.+++|++|+|++|++.+ .+|..+.
T Consensus 355 ~l~~L~~L~L~~N~l~~l~~ip~~l~ 380 (454)
T 1jl5_A 355 LPQNLKQLHVEYNPLREFPDIPESVE 380 (454)
T ss_dssp CCTTCCEEECCSSCCSSCCCCCTTCC
T ss_pred hhhhccEEECCCCCCCcCCCChHHHH
Confidence 58999999999999877 5665443
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=2.5e-26 Score=274.68 Aligned_cols=291 Identities=21% Similarity=0.215 Sum_probs=222.6
Q ss_pred cccccEEEecCCCCCCCCC-CC-Cccccceeeccccccccc-cccCCCCCcCcccCCCCCCCCCeEEeccCCCCCcccCC
Q 001348 489 SDELRYLHWHGYPLKMLPS-NF-TPENLIELNLLYSRIEQL-WKGKKGCKSLRCFPNNIHFRSPISLNFSYCVNFKEFPQ 565 (1094)
Q Consensus 489 ~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~n~i~~l-~~~~~~l~~L~~~~~~~~~~~l~~L~Ls~~~~l~~~p~ 565 (1094)
|.+++.|++++|.++.++. .| .+.+|++|+|++|.++.+ +..+..+++|+ .|+|++|. +..+|.
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~------------~L~L~~n~-l~~~~~ 97 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLR------------TLGLRSNR-LKLIPL 97 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC------------EEECCSSC-CCSCCT
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCC------------EEECCCCc-CCccCc
Confidence 4567778888887777753 33 467788888888877766 44566666776 77777764 444543
Q ss_pred c-c---CCccEEEeccCCCCcc-ccccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCc
Q 001348 566 I-S---GNVRELYLRGTPIEYV-PSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGC 640 (1094)
Q Consensus 566 ~-~---~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~ 640 (1094)
. + .+|++|+|++|.+..+ |..+..+++|++|+|++|.+.+..|..+.++++|++|++++|.+....+..+.++++
T Consensus 98 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 177 (477)
T 2id5_A 98 GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG 177 (477)
T ss_dssp TSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTT
T ss_pred ccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCC
Confidence 2 1 2788888888888766 556788888888888888887777777888888888888888777666667888888
Q ss_pred cceeeccCcccccccc-hhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccCCc-cccCCCCCcEEEccC
Q 001348 641 LEDIDLEGTAITELPS-SIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQLPS-SITNLNELQVVWCSG 718 (1094)
Q Consensus 641 L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p~-~l~~l~~L~~L~l~~ 718 (1094)
|+.|++++|.+..++. .+..+++|+.|++++|...+.+|.......+|+.|++++|.++.+|. .+..+++|+.|++++
T Consensus 178 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 257 (477)
T 2id5_A 178 LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSY 257 (477)
T ss_dssp CCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCS
T ss_pred CcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCC
Confidence 8888888888886654 57788888888888888888887777777788888888888888773 577888888888888
Q ss_pred CCCCCCCC-CCCCCCCCCEEeCCCCCCCCC-CccccCCCCCCeeecCCCCCcccch-hhcCCCCCCEEEccCCCCCC
Q 001348 719 CRGLILPP-SFSGLSYLTELDLSCCNLIEI-PQDIGCLSLLRSLDLRKNNFEYLPA-SMKHLSKLKSLDLSCCNMLQ 792 (1094)
Q Consensus 719 ~~~~~lp~-~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~~~~l~ 792 (1094)
|....++. .+..+++|+.|+|++|+++.+ |..+..+++|+.|+|++|+++.+|. .+..+++|+.|+|++|++..
T Consensus 258 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 258 NPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp SCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred CcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 87665544 477888888888888888875 5567888888888888888887775 35778888888888887643
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=2.9e-26 Score=274.08 Aligned_cols=308 Identities=19% Similarity=0.197 Sum_probs=259.9
Q ss_pred ccEEEecCCCCCCCCCCCCccccceeecccccccccc-ccCCCCCcCcccCCCCCCCCCeEEeccCCCCCcccCCccC--
Q 001348 492 LRYLHWHGYPLKMLPSNFTPENLIELNLLYSRIEQLW-KGKKGCKSLRCFPNNIHFRSPISLNFSYCVNFKEFPQISG-- 568 (1094)
Q Consensus 492 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~i~~l~-~~~~~l~~L~~~~~~~~~~~l~~L~Ls~~~~l~~~p~~~~-- 568 (1094)
-+.++.+++.++.+|..+ +.+|+.|+|++|+|+.+. ..+..+++|+ .|+|++|..-...|..+.
T Consensus 13 ~~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~------------~L~L~~n~i~~~~~~~~~~l 79 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKTLNQDEFASFPHLE------------ELELNENIVSAVEPGAFNNL 79 (477)
T ss_dssp TTEEECCSCCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCC------------EEECTTSCCCEECTTTTTTC
T ss_pred CCEEEeCCCCcCcCCCCC-CCCCcEEECCCCccceECHhHccCCCCCC------------EEECCCCccCEeChhhhhCC
Confidence 357888888999999865 578999999999999884 4677888888 999999854443354443
Q ss_pred -CccEEEeccCCCCccccc-cccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeec
Q 001348 569 -NVRELYLRGTPIEYVPSS-IDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDL 646 (1094)
Q Consensus 569 -~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L 646 (1094)
+|++|+|++|.+..+|.. +.++++|++|+|++|.+.+..|..+.++++|++|++++|.+....|..+.++++|++|++
T Consensus 80 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 159 (477)
T 2id5_A 80 FNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTL 159 (477)
T ss_dssp TTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEE
T ss_pred ccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEEC
Confidence 899999999999999865 689999999999999998888888999999999999999988888889999999999999
Q ss_pred cCcccccccc-hhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccC-ccCCccccCCCCCcEEEccCCCCCCC
Q 001348 647 EGTAITELPS-SIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAI-SQLPSSITNLNELQVVWCSGCRGLIL 724 (1094)
Q Consensus 647 ~~~~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i-~~~p~~l~~l~~L~~L~l~~~~~~~l 724 (1094)
++|.++.+|. .+.++++|+.|++++|.+.+..+..+..+++|+.|++++|.. ..+|..+....+|+.|++++|....+
T Consensus 160 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 239 (477)
T 2id5_A 160 EKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV 239 (477)
T ss_dssp ESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSC
T ss_pred CCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccccc
Confidence 9999998876 488999999999999988877777899999999999999754 46677777777999999999998888
Q ss_pred CC-CCCCCCCCCEEeCCCCCCCCCCc-cccCCCCCCeeecCCCCCccc-chhhcCCCCCCEEEccCCCCCCCCCcccccc
Q 001348 725 PP-SFSGLSYLTELDLSCCNLIEIPQ-DIGCLSLLRSLDLRKNNFEYL-PASMKHLSKLKSLDLSCCNMLQSLPELPLQL 801 (1094)
Q Consensus 725 p~-~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~L 801 (1094)
|. .+..+++|+.|+|++|.++.++. .+..+++|+.|+|++|+++.+ |..+..+++|+.|+|++|.+....+..+..+
T Consensus 240 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 319 (477)
T 2id5_A 240 PYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSV 319 (477)
T ss_dssp CHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCG
T ss_pred CHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCC
Confidence 74 57889999999999999998655 478899999999999999976 5678899999999999998776555555555
Q ss_pred ccccccccccc
Q 001348 802 KFLQAKDCKQL 812 (1094)
Q Consensus 802 ~~L~~~~c~~l 812 (1094)
..|...+...+
T Consensus 320 ~~L~~L~l~~N 330 (477)
T 2id5_A 320 GNLETLILDSN 330 (477)
T ss_dssp GGCCEEECCSS
T ss_pred cccCEEEccCC
Confidence 44444444443
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=4.4e-26 Score=264.97 Aligned_cols=300 Identities=17% Similarity=0.200 Sum_probs=190.0
Q ss_pred CCCCceEEEEeCCCCCCccccccccccCCccccCcccccEEEecCCCCCCCCC-CC-Cccccceeecccccccccccc-C
Q 001348 455 NMPNLRFLKFYMPKLFGISDMVCKLHLPQGLQYLSDELRYLHWHGYPLKMLPS-NF-TPENLIELNLLYSRIEQLWKG-K 531 (1094)
Q Consensus 455 ~l~~Lr~L~l~~n~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~n~i~~l~~~-~ 531 (1094)
.+++|+.|++++|.+. .+|..+..-.++|++|++++|.++.++. .+ .+.+|++|+|++|.++.++.. +
T Consensus 43 ~l~~l~~l~l~~~~l~---------~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 113 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR---------KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF 113 (390)
T ss_dssp GGCCCSEEEEESCEES---------EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred ccCCceEEEecCCchh---------hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHh
Confidence 3578888888887663 3555543322468888888888887765 33 477888888888887766433 4
Q ss_pred CCCCcCcccCCCCCCCCCeEEeccCCCCCcccCCc----cCCccEEEeccCCCCccc-cccccccccceeeccccccccc
Q 001348 532 KGCKSLRCFPNNIHFRSPISLNFSYCVNFKEFPQI----SGNVRELYLRGTPIEYVP-SSIDCLAKLEYLDLGHCTILES 606 (1094)
Q Consensus 532 ~~l~~L~~~~~~~~~~~l~~L~Ls~~~~l~~~p~~----~~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~~~~ 606 (1094)
..+++|+ .|++++|. +..+|.. ..+|++|+|++|.+..++ ..++.+++|++|++++|.+...
T Consensus 114 ~~l~~L~------------~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 114 QNVPLLT------------VLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 180 (390)
T ss_dssp TTCTTCC------------EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred cCCCCCC------------EEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc
Confidence 5566666 77777663 4444432 126667777776666553 3466666777777776665443
Q ss_pred chhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccCcccccccchhhccCCCcEEecCCCCCCCCCCccccCCC
Q 001348 607 ISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEGTAITELPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLK 686 (1094)
Q Consensus 607 lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~ 686 (1094)
+ +..+++|++|++++|.... +...++|++|++++|.++.+|... .++|+.|++++|.+.+. ..+..++
T Consensus 181 -~--~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~--~~l~~l~ 248 (390)
T 3o6n_A 181 -D--LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--AWLLNYP 248 (390)
T ss_dssp -C--GGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEEECCC--CSSCCEEECCSSCCCCC--GGGGGCT
T ss_pred -c--cccccccceeecccccccc-----cCCCCcceEEECCCCeeeeccccc--cccccEEECCCCCCccc--HHHcCCC
Confidence 1 4456666677766654432 223345667777777666665432 45667777766665442 4566666
Q ss_pred cccEEecCCccCccC-CccccCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeCCCCCCCCCCccccCCCCCCeeecCCC
Q 001348 687 SLKMLCANESAISQL-PSSITNLNELQVVWCSGCRGLILPPSFSGLSYLTELDLSCCNLIEIPQDIGCLSLLRSLDLRKN 765 (1094)
Q Consensus 687 ~L~~L~l~~~~i~~~-p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n 765 (1094)
+|+.|++++|.++.+ |..+..+++|+.|++++|....+|..+..+++|++|+|++|.++.+|..++.+++|+.|+|++|
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N 328 (390)
T 3o6n_A 249 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN 328 (390)
T ss_dssp TCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSS
T ss_pred CccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCC
Confidence 677777777666654 5566666666666666666666666566666666666666666666666666666666666666
Q ss_pred CCcccchhhcCCCCCCEEEccCCCC
Q 001348 766 NFEYLPASMKHLSKLKSLDLSCCNM 790 (1094)
Q Consensus 766 ~l~~lp~~l~~l~~L~~L~L~~~~~ 790 (1094)
.++.+| +..+++|+.|+|++|++
T Consensus 329 ~i~~~~--~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 329 SIVTLK--LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp CCCCCC--CCTTCCCSEEECCSSCE
T ss_pred ccceeC--chhhccCCEEEcCCCCc
Confidence 666665 55566666666666654
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=2.3e-25 Score=263.25 Aligned_cols=300 Identities=17% Similarity=0.158 Sum_probs=239.8
Q ss_pred ccccCCCCCceEEEEeCCCCCCccccccccccCCccccCcccccEEEecCCCCCCCCCCCCccccceeeccccccccccc
Q 001348 450 PQAFANMPNLRFLKFYMPKLFGISDMVCKLHLPQGLQYLSDELRYLHWHGYPLKMLPSNFTPENLIELNLLYSRIEQLWK 529 (1094)
Q Consensus 450 ~~~f~~l~~Lr~L~l~~n~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~i~~l~~ 529 (1094)
+..+.++++|+.|++++|.+++ +| ++..+ ++|++|++++|.++.+| ...+.+|++|++++|+++.+.
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~---------~~-~l~~l-~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~- 101 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITD---------MT-GIEKL-TGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD- 101 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCC---------CT-TGGGC-TTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC-
T ss_pred ccChhHcCCCCEEEccCCCccc---------Ch-hhccc-CCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee-
Confidence 4467788999999999998854 23 45555 47999999999999987 456889999999999998873
Q ss_pred cCCCCCcCcccCCCCCCCCCeEEeccCCCCCcccC-CccCCccEEEeccCCCCccccccccccccceeecccccccccch
Q 001348 530 GKKGCKSLRCFPNNIHFRSPISLNFSYCVNFKEFP-QISGNVRELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILESIS 608 (1094)
Q Consensus 530 ~~~~l~~L~~~~~~~~~~~l~~L~Ls~~~~l~~~p-~~~~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp 608 (1094)
+..+++|+ .|++++|. +..+| ....+|++|++++|.++.++ ++.+++|++|++++|...+.++
T Consensus 102 -~~~l~~L~------------~L~L~~N~-l~~l~~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~ 165 (457)
T 3bz5_A 102 -VTPLTKLT------------YLNCDTNK-LTKLDVSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD 165 (457)
T ss_dssp -CTTCTTCC------------EEECCSSC-CSCCCCTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC
T ss_pred -cCCCCcCC------------EEECCCCc-CCeecCCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc
Confidence 66777777 99999884 45555 11228999999999999885 8889999999999997777663
Q ss_pred hhhhcCCcccEEeccCCcccCccchhhcccCccceeeccCcccccccchhhccCCCcEEecCCCCCCCCCCccccCCCcc
Q 001348 609 TSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEGTAITELPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSL 688 (1094)
Q Consensus 609 ~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L 688 (1094)
++.+++|++|++++|.+.+ +| +..+++|+.|++++|.++.++ ++.+++|+.|++++|.+.+ +| ++.+++|
T Consensus 166 --~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L 235 (457)
T 3bz5_A 166 --VTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQL 235 (457)
T ss_dssp --CTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTC
T ss_pred --cccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc-cC--ccccCCC
Confidence 7789999999999987665 55 888999999999999999884 8899999999999988776 66 8899999
Q ss_pred cEEecCCccCccCCccccCCCCCcEEEccCCCCCCCCC---------CCCCCCCCCEEeCCCCCCCC-CCc--------c
Q 001348 689 KMLCANESAISQLPSSITNLNELQVVWCSGCRGLILPP---------SFSGLSYLTELDLSCCNLIE-IPQ--------D 750 (1094)
Q Consensus 689 ~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~~~~lp~---------~l~~l~~L~~L~Ls~n~l~~-lp~--------~ 750 (1094)
+.|++++|.++.+| +..+++|+.|+++++....+.- .++.+++|+.|+|++|.... +|. .
T Consensus 236 ~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~ 313 (457)
T 3bz5_A 236 TYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELD 313 (457)
T ss_dssp SEEECCSSCCSCCC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCC
T ss_pred CEEEeeCCcCCCcC--HHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEec
Confidence 99999999999876 4556666666665554322211 14577899999999986432 332 2
Q ss_pred ccCCCCCCeeecCCCCCcccchhhcCCCCCCEEEccCCCCCC
Q 001348 751 IGCLSLLRSLDLRKNNFEYLPASMKHLSKLKSLDLSCCNMLQ 792 (1094)
Q Consensus 751 l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~~~~l~ 792 (1094)
+..+++|+.|++++|+++.++ +..+++|+.|++++|++.+
T Consensus 314 l~~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 314 LSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CTTCTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSSCCCB
T ss_pred hhhcccCCEEECCCCcccccc--cccCCcCcEEECCCCCCCC
Confidence 567789999999999999885 8889999999999998765
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=8.6e-26 Score=262.52 Aligned_cols=297 Identities=16% Similarity=0.115 Sum_probs=252.9
Q ss_pred ccccEEEecCCCCCCCCCCC--Cccccceeeccccccccccc-cCCCCCcCcccCCCCCCCCCeEEeccCCCCCcccCCc
Q 001348 490 DELRYLHWHGYPLKMLPSNF--TPENLIELNLLYSRIEQLWK-GKKGCKSLRCFPNNIHFRSPISLNFSYCVNFKEFPQI 566 (1094)
Q Consensus 490 ~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~n~i~~l~~-~~~~l~~L~~~~~~~~~~~l~~L~Ls~~~~l~~~p~~ 566 (1094)
.++++|+++++.++.+|..+ .+++|++|++++|.++.+.. .+..+++|+ .|++++|..-...|..
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~------------~L~L~~n~l~~~~~~~ 112 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQ------------KLYMGFNAIRYLPPHV 112 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCC------------EEECCSSCCCCCCTTT
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcC------------EEECCCCCCCcCCHHH
Confidence 47999999999999999864 57899999999999998764 677788888 9999999644433443
Q ss_pred cC---CccEEEeccCCCCcccccc-ccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccc
Q 001348 567 SG---NVRELYLRGTPIEYVPSSI-DCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLE 642 (1094)
Q Consensus 567 ~~---~L~~L~L~~~~l~~lp~~i-~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~ 642 (1094)
+. +|++|+|++|.+..+|..+ +.+++|++|++++|.+.+..|..+.++++|++|++++|.+... .+..+++|+
T Consensus 113 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~ 189 (390)
T 3o6n_A 113 FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLF 189 (390)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCS
T ss_pred hcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccc
Confidence 33 8999999999999998874 8999999999999999888888899999999999999887654 367789999
Q ss_pred eeeccCcccccccchhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccCCccccCCCCCcEEEccCCCCC
Q 001348 643 DIDLEGTAITELPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQLPSSITNLNELQVVWCSGCRGL 722 (1094)
Q Consensus 643 ~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~~~ 722 (1094)
+|++++|.++.++ ..++|+.|++++|.+.. +|.. ..++|+.|++++|.++.. ..+..+++|+.|++++|...
T Consensus 190 ~L~l~~n~l~~~~----~~~~L~~L~l~~n~l~~-~~~~--~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~ 261 (390)
T 3o6n_A 190 HANVSYNLLSTLA----IPIAVEELDASHNSINV-VRGP--VNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELE 261 (390)
T ss_dssp EEECCSSCCSEEE----CCSSCSEEECCSSCCCE-EECC--CCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCC
T ss_pred eeecccccccccC----CCCcceEEECCCCeeee-cccc--ccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCC
Confidence 9999999988654 35689999999987654 3432 357999999999999886 57899999999999999976
Q ss_pred CC-CCCCCCCCCCCEEeCCCCCCCCCCccccCCCCCCeeecCCCCCcccchhhcCCCCCCEEEccCCCCCCCCCcccccc
Q 001348 723 IL-PPSFSGLSYLTELDLSCCNLIEIPQDIGCLSLLRSLDLRKNNFEYLPASMKHLSKLKSLDLSCCNMLQSLPELPLQL 801 (1094)
Q Consensus 723 ~l-p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~~~L 801 (1094)
.. |..+..+++|+.|+|++|+++.+|..+..+++|+.|+|++|+++.+|..+..+++|+.|+|++|++...-...+++|
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L 341 (390)
T 3o6n_A 262 KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTL 341 (390)
T ss_dssp EEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCC
T ss_pred CcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeCchhhccC
Confidence 55 66789999999999999999999888889999999999999999999999999999999999999766544566677
Q ss_pred cccccccc
Q 001348 802 KFLQAKDC 809 (1094)
Q Consensus 802 ~~L~~~~c 809 (1094)
+.|++.++
T Consensus 342 ~~L~l~~N 349 (390)
T 3o6n_A 342 KNLTLSHN 349 (390)
T ss_dssp SEEECCSS
T ss_pred CEEEcCCC
Confidence 77777654
No 39
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=2.3e-25 Score=252.67 Aligned_cols=282 Identities=19% Similarity=0.242 Sum_probs=199.2
Q ss_pred cccEEEecCCCCCCCCCCCCccccceeeccccccccccc-cCCCCCcCcccCCCCCCCCCeEEeccCCCCCcccCCccC-
Q 001348 491 ELRYLHWHGYPLKMLPSNFTPENLIELNLLYSRIEQLWK-GKKGCKSLRCFPNNIHFRSPISLNFSYCVNFKEFPQISG- 568 (1094)
Q Consensus 491 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~i~~l~~-~~~~l~~L~~~~~~~~~~~l~~L~Ls~~~~l~~~p~~~~- 568 (1094)
+++.++++++.++.+|..+ +++|++|++++|+++.+.. .+..+++|+ +|++++|..-...|..+.
T Consensus 32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~------------~L~L~~n~l~~~~~~~~~~ 98 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLH------------TLILINNKISKISPGAFAP 98 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCC------------EEECCSSCCCCBCTTTTTT
T ss_pred CCeEEEecCCCccccCccC-CCCCeEEECCCCcCCEeChhhhccCCCCC------------EEECCCCcCCeeCHHHhcC
Confidence 4677777777777777654 3567777777777776654 355555665 666666643332243332
Q ss_pred --CccEEEeccCCCCccccccccccccceeecccccccccchhhhhcCCcccEEeccCCcccC--ccchhhcccCcccee
Q 001348 569 --NVRELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLE--SFPEILEKMGCLEDI 644 (1094)
Q Consensus 569 --~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~--~~p~~l~~l~~L~~L 644 (1094)
+|++|+|++|.++.+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.... ..+..+.++++|++|
T Consensus 99 l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L 176 (330)
T 1xku_A 99 LVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 176 (330)
T ss_dssp CTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEE
T ss_pred CCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEE
Confidence 67788888888888877665 688888888888777777778888888888888877643 566778888888888
Q ss_pred eccCcccccccchhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccCCc-cccCCCCCcEEEccCCCCCC
Q 001348 645 DLEGTAITELPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQLPS-SITNLNELQVVWCSGCRGLI 723 (1094)
Q Consensus 645 ~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p~-~l~~l~~L~~L~l~~~~~~~ 723 (1094)
++++|.++.+|..+. ++|++|++++|.+.+..|..+..+++|+.|++++|.++.++. .+..+++|+.|++++|....
T Consensus 177 ~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 254 (330)
T 1xku_A 177 RIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK 254 (330)
T ss_dssp ECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS
T ss_pred ECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc
Confidence 888888888877654 788888888887776667778888888888888888876643 67777778888888777777
Q ss_pred CCCCCCCCCCCCEEeCCCCCCCCCCcc-cc------CCCCCCeeecCCCCCcc---cchhhcCCCCCCEEEccCCC
Q 001348 724 LPPSFSGLSYLTELDLSCCNLIEIPQD-IG------CLSLLRSLDLRKNNFEY---LPASMKHLSKLKSLDLSCCN 789 (1094)
Q Consensus 724 lp~~l~~l~~L~~L~Ls~n~l~~lp~~-l~------~l~~L~~L~L~~n~l~~---lp~~l~~l~~L~~L~L~~~~ 789 (1094)
+|..+..+++|++|+|++|.++.+|.. +. ..++|+.|++++|.+.. .|..+..+++|+.++|++|+
T Consensus 255 lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 255 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 777777777788888877777776543 21 23567777777776652 23456667777777777663
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=9e-26 Score=277.09 Aligned_cols=299 Identities=17% Similarity=0.196 Sum_probs=167.1
Q ss_pred CCCceEEEEeCCCCCCccccccccccCCccccCcccccEEEecCCCCCCCCC-CC-Cccccceeecccccccccccc-CC
Q 001348 456 MPNLRFLKFYMPKLFGISDMVCKLHLPQGLQYLSDELRYLHWHGYPLKMLPS-NF-TPENLIELNLLYSRIEQLWKG-KK 532 (1094)
Q Consensus 456 l~~Lr~L~l~~n~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~n~i~~l~~~-~~ 532 (1094)
+.+++.|++++|.+. .+|..+..-.++|++|++++|.++.+|. .+ .+.+|++|+|++|.++.++.. +.
T Consensus 50 l~~l~~l~l~~~~l~---------~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 120 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR---------KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 120 (597)
T ss_dssp GCCCSEEEESSCEES---------EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCceEEEeeCCCCC---------CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHc
Confidence 567777777776553 3444433322467777777777776664 23 466777777777777665433 34
Q ss_pred CCCcCcccCCCCCCCCCeEEeccCCCCCcccCCcc----CCccEEEeccCCCCcccc-ccccccccceeecccccccccc
Q 001348 533 GCKSLRCFPNNIHFRSPISLNFSYCVNFKEFPQIS----GNVRELYLRGTPIEYVPS-SIDCLAKLEYLDLGHCTILESI 607 (1094)
Q Consensus 533 ~l~~L~~~~~~~~~~~l~~L~Ls~~~~l~~~p~~~----~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~~~~l 607 (1094)
.+++|+ .|++++|. +..+|... .+|++|+|++|.+..+++ .++.+++|++|+|++|.+.+.
T Consensus 121 ~l~~L~------------~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~- 186 (597)
T 3oja_B 121 NVPLLT------------VLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV- 186 (597)
T ss_dssp TCTTCC------------EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-
T ss_pred CCCCCC------------EEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-
Confidence 555555 66666553 33443321 155666666665555433 455556666666666554432
Q ss_pred hhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccCcccccccchhhccCCCcEEecCCCCCCCCCCccccCCCc
Q 001348 608 STSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEGTAITELPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKS 687 (1094)
Q Consensus 608 p~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~ 687 (1094)
+ ++.+++|+.|++++|.+.+ +...++|+.|++++|.++.+|..+ .++|+.|+|++|.+.+ +..+..+++
T Consensus 187 ~--~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~ 255 (597)
T 3oja_B 187 D--LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPG 255 (597)
T ss_dssp C--GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCC--CGGGGGCTT
T ss_pred C--hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCC--ChhhccCCC
Confidence 1 3345556666665554322 223345566666666655554432 2456666666655544 244555666
Q ss_pred ccEEecCCccCccC-CccccCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeCCCCCCCCCCccccCCCCCCeeecCCCC
Q 001348 688 LKMLCANESAISQL-PSSITNLNELQVVWCSGCRGLILPPSFSGLSYLTELDLSCCNLIEIPQDIGCLSLLRSLDLRKNN 766 (1094)
Q Consensus 688 L~~L~l~~~~i~~~-p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~ 766 (1094)
|+.|++++|.++.+ |..+..+++|+.|++++|....+|..+..+++|+.|+|++|.++.+|..++.+++|+.|+|++|.
T Consensus 256 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 256 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp CSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC
T ss_pred CCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCC
Confidence 66666666655543 45555566666666666655555555555566666666666665555555555666666666666
Q ss_pred CcccchhhcCCCCCCEEEccCCCC
Q 001348 767 FEYLPASMKHLSKLKSLDLSCCNM 790 (1094)
Q Consensus 767 l~~lp~~l~~l~~L~~L~L~~~~~ 790 (1094)
++.+| +..+++|+.|+|++|++
T Consensus 336 l~~~~--~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 336 IVTLK--LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp CCCCC--CCTTCCCSEEECCSSCE
T ss_pred CCCcC--hhhcCCCCEEEeeCCCC
Confidence 55554 44555666666666554
No 41
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=3.5e-25 Score=261.74 Aligned_cols=284 Identities=20% Similarity=0.154 Sum_probs=209.4
Q ss_pred cccCcccccEEEecCCCCCCCCCCCCccccceeeccccccccccccCCCCCcCcccCCCCCCCCCeEEeccCCCCCcccC
Q 001348 485 LQYLSDELRYLHWHGYPLKMLPSNFTPENLIELNLLYSRIEQLWKGKKGCKSLRCFPNNIHFRSPISLNFSYCVNFKEFP 564 (1094)
Q Consensus 485 l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~~~~~~~~~~l~~L~Ls~~~~l~~~p 564 (1094)
+..+ ++|++|++++|.++.+|....+.+|++|++++|+++.++ +..+++|+ .|++++|. +..++
T Consensus 38 ~~~l-~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~------------~L~Ls~N~-l~~~~ 101 (457)
T 3bz5_A 38 EEQL-ATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLT------------YLACDSNK-LTNLD 101 (457)
T ss_dssp HHHH-TTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCS------------EEECCSSC-CSCCC
T ss_pred hhHc-CCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc--cccCCCCC------------EEECcCCC-Cceee
Confidence 3344 479999999999999986567899999999999999874 66677777 88888885 44444
Q ss_pred -CccCCccEEEeccCCCCccccccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccce
Q 001348 565 -QISGNVRELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLED 643 (1094)
Q Consensus 565 -~~~~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~ 643 (1094)
....+|++|++++|.++.+| ++.+++|++|++++|.+.+ +| ++++++|++|++++|...+.+ .++.+++|++
T Consensus 102 ~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~ 174 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTT 174 (457)
T ss_dssp CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCE
T ss_pred cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCE
Confidence 11228888999988888875 7888889999998888766 33 777888999999888777766 4778888888
Q ss_pred eeccCcccccccchhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccCCccccCCCCCcEEEccCCCCCC
Q 001348 644 IDLEGTAITELPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQLPSSITNLNELQVVWCSGCRGLI 723 (1094)
Q Consensus 644 L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~~~~ 723 (1094)
|++++|.++.+| ++.+++|+.|++++|.+.+. .++.+++|+.|++++|.++.+| +..+++|+.|++++|....
T Consensus 175 L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 175 LDCSFNKITELD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp EECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC
T ss_pred EECCCCccceec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCC
Confidence 898888888887 77888888888888876654 3778888888888888888876 7788888888888888766
Q ss_pred CCCCCCCCCCCCEEeCCCCCCCCCCccccCCCCCCeeecCCCCCc-ccchhhcCCCCCCEEEccCCCCCCCCCccccccc
Q 001348 724 LPPSFSGLSYLTELDLSCCNLIEIPQDIGCLSLLRSLDLRKNNFE-YLPASMKHLSKLKSLDLSCCNMLQSLPELPLQLK 802 (1094)
Q Consensus 724 lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~~~L~ 802 (1094)
+| +..+++|+.|++++|+ |+.|++++|.+. .+| +..+++|+.|+|++|+.++.+|....+|+
T Consensus 248 ~~--~~~l~~L~~L~l~~n~-------------L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~ 310 (457)
T 3bz5_A 248 LD--VSTLSKLTTLHCIQTD-------------LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGIT 310 (457)
T ss_dssp CC--CTTCTTCCEEECTTCC-------------CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCS
T ss_pred cC--HHHCCCCCEEeccCCC-------------CCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcce
Confidence 65 4567777777776653 344445555432 333 34456666666666666666555555555
Q ss_pred ccccccccccccc
Q 001348 803 FLQAKDCKQLQSL 815 (1094)
Q Consensus 803 ~L~~~~c~~l~~~ 815 (1094)
.|++.+|++++.+
T Consensus 311 ~L~l~~~~~L~~L 323 (457)
T 3bz5_A 311 ELDLSQNPKLVYL 323 (457)
T ss_dssp CCCCTTCTTCCEE
T ss_pred EechhhcccCCEE
Confidence 5555555555444
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.93 E-value=3e-25 Score=251.96 Aligned_cols=281 Identities=16% Similarity=0.196 Sum_probs=202.0
Q ss_pred cccEEEecCCCCCCCCCCCCccccceeeccccccccccc-cCCCCCcCcccCCCCCCCCCeEEeccCCCCCcccCCccC-
Q 001348 491 ELRYLHWHGYPLKMLPSNFTPENLIELNLLYSRIEQLWK-GKKGCKSLRCFPNNIHFRSPISLNFSYCVNFKEFPQISG- 568 (1094)
Q Consensus 491 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~i~~l~~-~~~~l~~L~~~~~~~~~~~l~~L~Ls~~~~l~~~p~~~~- 568 (1094)
.++.++++++.++.+|..+ +++|+.|++++|.++.+.. .+..+++|+ .|++++|..-...|..+.
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~------------~L~L~~n~l~~~~~~~~~~ 100 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLY------------ALVLVNNKISKIHEKAFSP 100 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCC------------EEECCSSCCCEECGGGSTT
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCc------------EEECCCCccCccCHhHhhC
Confidence 5778888888888888765 3678888888888877643 466666666 777777753333243332
Q ss_pred --CccEEEeccCCCCccccccccccccceeecccccccccchhhhhcCCcccEEeccCCccc--CccchhhcccCcccee
Q 001348 569 --NVRELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKL--ESFPEILEKMGCLEDI 644 (1094)
Q Consensus 569 --~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~--~~~p~~l~~l~~L~~L 644 (1094)
+|++|+|++|.+..+|..+. ++|++|++++|.+....+..+.++++|++|++++|.+. +..|..+..+ +|++|
T Consensus 101 l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L 177 (332)
T 2ft3_A 101 LRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYL 177 (332)
T ss_dssp CTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCC
T ss_pred cCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEE
Confidence 78888888888888887765 78888888888877665666788888888888888774 3566777777 88888
Q ss_pred eccCcccccccchhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccCCc-cccCCCCCcEEEccCCCCCC
Q 001348 645 DLEGTAITELPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQLPS-SITNLNELQVVWCSGCRGLI 723 (1094)
Q Consensus 645 ~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p~-~l~~l~~L~~L~l~~~~~~~ 723 (1094)
++++|.++.+|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.++.++. .+..+++|+.|++++|....
T Consensus 178 ~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 255 (332)
T 2ft3_A 178 RISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR 255 (332)
T ss_dssp BCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCB
T ss_pred ECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCee
Confidence 888888888887654 688888888887777777778888888888888888877654 57777777777777777777
Q ss_pred CCCCCCCCCCCCEEeCCCCCCCCCCcc-ccC------CCCCCeeecCCCCCc--c-cchhhcCCCCCCEEEccCCC
Q 001348 724 LPPSFSGLSYLTELDLSCCNLIEIPQD-IGC------LSLLRSLDLRKNNFE--Y-LPASMKHLSKLKSLDLSCCN 789 (1094)
Q Consensus 724 lp~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~------l~~L~~L~L~~n~l~--~-lp~~l~~l~~L~~L~L~~~~ 789 (1094)
+|..+..+++|+.|+|++|.++.++.. +.. .++|+.|++++|.+. . .|..+..+++|+.|+|++|+
T Consensus 256 lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 256 VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 777777777777777777777766543 221 356777777777665 2 34456667777777777664
No 43
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=3.9e-25 Score=269.80 Aligned_cols=329 Identities=18% Similarity=0.140 Sum_probs=231.4
Q ss_pred CCCceEEEEeCCCCCCccccccccccCCccccCcccccEEEecCCCCCCCCC-CC-Cccccceeeccccccccc-cccCC
Q 001348 456 MPNLRFLKFYMPKLFGISDMVCKLHLPQGLQYLSDELRYLHWHGYPLKMLPS-NF-TPENLIELNLLYSRIEQL-WKGKK 532 (1094)
Q Consensus 456 l~~Lr~L~l~~n~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~n~i~~l-~~~~~ 532 (1094)
+...+++++++|.++. +|.++ +++|+.|++++|.++.+|. .+ .+.+|++|+|++|+|+.+ +..+.
T Consensus 30 ~~~~~~l~ls~~~L~~---------ip~~~---~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 97 (562)
T 3a79_B 30 NELESMVDYSNRNLTH---------VPKDL---PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFL 97 (562)
T ss_dssp ---CCEEECTTSCCCS---------CCTTS---CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTT
T ss_pred cCCCcEEEcCCCCCcc---------CCCCC---CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhC
Confidence 3445899999998853 45443 3689999999999999984 34 589999999999999988 45578
Q ss_pred CCCcCcccCCCCCCCCCeEEeccCCCCCcccCCc-cCCccEEEeccCCCCccc--cccccccccceeecccccccccchh
Q 001348 533 GCKSLRCFPNNIHFRSPISLNFSYCVNFKEFPQI-SGNVRELYLRGTPIEYVP--SSIDCLAKLEYLDLGHCTILESIST 609 (1094)
Q Consensus 533 ~l~~L~~~~~~~~~~~l~~L~Ls~~~~l~~~p~~-~~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~L~~~~~~~~lp~ 609 (1094)
.+++|+ +|++++|. +..+|.. ..+|++|+|++|.+..+| ..++++++|++|++++|.+...
T Consensus 98 ~l~~L~------------~L~Ls~N~-l~~lp~~~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--- 161 (562)
T 3a79_B 98 FNQDLE------------YLDVSHNR-LQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--- 161 (562)
T ss_dssp TCTTCC------------EEECTTSC-CCEECSCCCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---
T ss_pred CCCCCC------------EEECCCCc-CCccCccccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---
Confidence 888888 99999996 5677765 229999999999999865 7899999999999999988653
Q ss_pred hhhcCCcc--cEEeccCCcc--cCccchhhcc--------------------------cCccceeeccCccc--------
Q 001348 610 SICKLKSL--LKLCLDNCSK--LESFPEILEK--------------------------MGCLEDIDLEGTAI-------- 651 (1094)
Q Consensus 610 ~i~~l~~L--~~L~L~~~~~--~~~~p~~l~~--------------------------l~~L~~L~L~~~~i-------- 651 (1094)
.+..+++| ++|++++|.+ .+..|..+.. +++|+.|++++|..
T Consensus 162 ~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~ 241 (562)
T 3a79_B 162 DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF 241 (562)
T ss_dssp TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH
T ss_pred chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHH
Confidence 35556666 9999999988 5555555444 44566666666531
Q ss_pred -------------------------ccccchhhccCCCcEEecCCCCCCCCCCccc-----cCCCc--------------
Q 001348 652 -------------------------TELPSSIEYLGGLTTLNLTGCSKLDNLPENL-----GNLKS-------------- 687 (1094)
Q Consensus 652 -------------------------~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l-----~~l~~-------------- 687 (1094)
..++.. ....+|++|++++|.+.+.+|..+ .+++.
T Consensus 242 ~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p 320 (562)
T 3a79_B 242 LSELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFS 320 (562)
T ss_dssp HHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSC
T ss_pred HHHHhccCcceEEEecCCcCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecC
Confidence 011111 112367777777777776777665 44443
Q ss_pred ------------ccEEecCCccCccCCccccCCCCCcEEEccCCCCCC-CCCCCCCCCCCCEEeCCCCCCCCCC---ccc
Q 001348 688 ------------LKMLCANESAISQLPSSITNLNELQVVWCSGCRGLI-LPPSFSGLSYLTELDLSCCNLIEIP---QDI 751 (1094)
Q Consensus 688 ------------L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~Ls~n~l~~lp---~~l 751 (1094)
|+.|++++|.+..++ ....+++|+.|++++|.... .|..+.++++|+.|+|++|+++.++ ..+
T Consensus 321 ~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 399 (562)
T 3a79_B 321 KEALYSVFAEMNIKMLSISDTPFIHMV-CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT 399 (562)
T ss_dssp HHHHHHHHHTCCCSEEEEESSCCCCCC-CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTT
T ss_pred hhhhhhhhccCcceEEEccCCCccccc-CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhh
Confidence 344444444433221 11567778888888877554 5667777888888888888777654 456
Q ss_pred cCCCCCCeeecCCCCCcc-cchh-hcCCCCCCEEEccCCCCCCCCCccc-ccccccccccccccccc
Q 001348 752 GCLSLLRSLDLRKNNFEY-LPAS-MKHLSKLKSLDLSCCNMLQSLPELP-LQLKFLQAKDCKQLQSL 815 (1094)
Q Consensus 752 ~~l~~L~~L~L~~n~l~~-lp~~-l~~l~~L~~L~L~~~~~l~~lp~~~-~~L~~L~~~~c~~l~~~ 815 (1094)
+.+++|+.|+|++|.++. +|.. +..+++|+.|+|++|++.+.+|..+ .+|+.|++.++ .+..+
T Consensus 400 ~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~i 465 (562)
T 3a79_B 400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSI 465 (562)
T ss_dssp TTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCC
T ss_pred cCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCccc
Confidence 777888888888888875 7654 5677788888888887777666544 46777777665 34433
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=2.2e-25 Score=273.73 Aligned_cols=298 Identities=16% Similarity=0.120 Sum_probs=253.1
Q ss_pred ccccEEEecCCCCCCCCCCC--Cccccceeeccccccccccc-cCCCCCcCcccCCCCCCCCCeEEeccCCCCCcccCCc
Q 001348 490 DELRYLHWHGYPLKMLPSNF--TPENLIELNLLYSRIEQLWK-GKKGCKSLRCFPNNIHFRSPISLNFSYCVNFKEFPQI 566 (1094)
Q Consensus 490 ~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~n~i~~l~~-~~~~l~~L~~~~~~~~~~~l~~L~Ls~~~~l~~~p~~ 566 (1094)
.+++.|++++|.++.+|..+ .+.+|++|+|++|.|+.++. .+..+++|+ .|+|++|..-...|..
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~------------~L~L~~n~l~~~~~~~ 118 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQ------------KLYMGFNAIRYLPPHV 118 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCC------------EEECCSSCCCCCCTTT
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCC------------EEECCCCcCCCCCHHH
Confidence 47899999999999999864 47899999999999998764 677888888 9999999743333333
Q ss_pred cC---CccEEEeccCCCCcccccc-ccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccc
Q 001348 567 SG---NVRELYLRGTPIEYVPSSI-DCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLE 642 (1094)
Q Consensus 567 ~~---~L~~L~L~~~~l~~lp~~i-~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~ 642 (1094)
++ +|++|+|++|.+..+|..+ +.+++|++|+|++|.+.+..|..++++++|++|++++|.+.+. .++.+++|+
T Consensus 119 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~ 195 (597)
T 3oja_B 119 FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLF 195 (597)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCS
T ss_pred HcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---Chhhhhhhh
Confidence 33 8999999999999998774 8999999999999999888888899999999999999887654 366789999
Q ss_pred eeeccCcccccccchhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccCCccccCCCCCcEEEccCCCCC
Q 001348 643 DIDLEGTAITELPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQLPSSITNLNELQVVWCSGCRGL 722 (1094)
Q Consensus 643 ~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~~~ 722 (1094)
.|++++|.++.++ ...+|+.|++++|.+.. +|..+ .++|+.|++++|.++.. ..+..+++|+.|++++|...
T Consensus 196 ~L~l~~n~l~~l~----~~~~L~~L~ls~n~l~~-~~~~~--~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~ 267 (597)
T 3oja_B 196 HANVSYNLLSTLA----IPIAVEELDASHNSINV-VRGPV--NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELE 267 (597)
T ss_dssp EEECCSSCCSEEE----CCTTCSEEECCSSCCCE-EECSC--CSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCC
T ss_pred hhhcccCcccccc----CCchhheeeccCCcccc-ccccc--CCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccC
Confidence 9999999988654 45689999999987643 33322 36899999999999875 67899999999999999976
Q ss_pred CC-CCCCCCCCCCCEEeCCCCCCCCCCccccCCCCCCeeecCCCCCcccchhhcCCCCCCEEEccCCCCCCCCCcccccc
Q 001348 723 IL-PPSFSGLSYLTELDLSCCNLIEIPQDIGCLSLLRSLDLRKNNFEYLPASMKHLSKLKSLDLSCCNMLQSLPELPLQL 801 (1094)
Q Consensus 723 ~l-p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~~~L 801 (1094)
.+ |..+..+++|+.|+|++|.++.+|..++.+++|+.|+|++|.++.+|..+..+++|+.|+|++|++....+..+++|
T Consensus 268 ~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L 347 (597)
T 3oja_B 268 KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTL 347 (597)
T ss_dssp EEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCC
T ss_pred CCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcChhhcCCC
Confidence 55 66789999999999999999999988888999999999999999999999999999999999999877655667778
Q ss_pred ccccccccc
Q 001348 802 KFLQAKDCK 810 (1094)
Q Consensus 802 ~~L~~~~c~ 810 (1094)
+.|++.+++
T Consensus 348 ~~L~l~~N~ 356 (597)
T 3oja_B 348 KNLTLSHND 356 (597)
T ss_dssp SEEECCSSC
T ss_pred CEEEeeCCC
Confidence 888777654
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=5.5e-26 Score=255.40 Aligned_cols=243 Identities=24% Similarity=0.338 Sum_probs=217.8
Q ss_pred CccEEEeccCCCC---ccccccccccccceeeccc-ccccccchhhhhcCCcccEEeccCCcccCccchhhcccCcccee
Q 001348 569 NVRELYLRGTPIE---YVPSSIDCLAKLEYLDLGH-CTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDI 644 (1094)
Q Consensus 569 ~L~~L~L~~~~l~---~lp~~i~~L~~L~~L~L~~-~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L 644 (1094)
+++.|+|+++.+. .+|..++++++|++|+|++ |.+.+.+|..++++++|++|++++|.+.+.+|..+.++++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 7889999999998 5899999999999999995 88888999999999999999999999988999999999999999
Q ss_pred eccCcccc-cccchhhccCCCcEEecCCCCCCCCCCccccCCC-cccEEecCCccCc-cCCccccCCCCCcEEEccCCCC
Q 001348 645 DLEGTAIT-ELPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLK-SLKMLCANESAIS-QLPSSITNLNELQVVWCSGCRG 721 (1094)
Q Consensus 645 ~L~~~~i~-~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~-~L~~L~l~~~~i~-~~p~~l~~l~~L~~L~l~~~~~ 721 (1094)
++++|.++ .+|..+..+++|++|++++|.+.+.+|..+..++ +|+.|++++|.++ .+|..+..++ |+.|++++|..
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 99999999 7899999999999999999998889999999998 9999999999998 6788888887 99999999985
Q ss_pred C-CCCCCCCCCCCCCEEeCCCCCCCCCCccccCCCCCCeeecCCCCCc-ccchhhcCCCCCCEEEccCCCCCCCCCcccc
Q 001348 722 L-ILPPSFSGLSYLTELDLSCCNLIEIPQDIGCLSLLRSLDLRKNNFE-YLPASMKHLSKLKSLDLSCCNMLQSLPELPL 799 (1094)
Q Consensus 722 ~-~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~~ 799 (1094)
. ..|..+..+++|+.|+|++|.++..+..+..+++|+.|+|++|+++ .+|.++..+++|+.|+|++|++.+.+|.. .
T Consensus 210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~ 288 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-G 288 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-T
T ss_pred cCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-c
Confidence 5 4666789999999999999999976666888999999999999999 88999999999999999999999999976 4
Q ss_pred cccccccccccccc
Q 001348 800 QLKFLQAKDCKQLQ 813 (1094)
Q Consensus 800 ~L~~L~~~~c~~l~ 813 (1094)
+++.|...+...+.
T Consensus 289 ~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 289 NLQRFDVSAYANNK 302 (313)
T ss_dssp TGGGSCGGGTCSSS
T ss_pred cccccChHHhcCCC
Confidence 45555444444443
No 46
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.92 E-value=4.9e-24 Score=264.17 Aligned_cols=356 Identities=24% Similarity=0.211 Sum_probs=202.9
Q ss_pred eecccccccccccCccccCCCCCceEEEEeCCCCCCccccccccccCCc-cccCcccccEEEecCCCCCCCCCC-C-Ccc
Q 001348 436 IFLDLSKIRDINLNPQAFANMPNLRFLKFYMPKLFGISDMVCKLHLPQG-LQYLSDELRYLHWHGYPLKMLPSN-F-TPE 512 (1094)
Q Consensus 436 i~ldls~~~~~~l~~~~f~~l~~Lr~L~l~~n~l~~~~~~~~~~~l~~~-l~~l~~~Lr~L~l~~~~l~~lp~~-~-~~~ 512 (1094)
..||++.+....+.+.+|.++++|++|+|++|.+++ ++.+ +..+ .+|++|++++|+++.+|.. | .+.
T Consensus 55 ~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~---------i~~~~f~~L-~~L~~L~Ls~N~l~~l~~~~f~~L~ 124 (635)
T 4g8a_A 55 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT---------IEDGAYQSL-SHLSTLILTGNPIQSLALGAFSGLS 124 (635)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE---------ECTTTTTTC-TTCCEEECTTCCCCEECGGGGTTCT
T ss_pred CEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCC---------cChhHhcCC-CCCCEEEccCCcCCCCCHHHhcCCC
Confidence 368888888888889999999999999999998753 4443 4445 4799999999999998864 4 588
Q ss_pred ccceeecccccccccccc-CCCCCcCcccCCCCCCCCCeEEeccCCCCCc-ccCCcc---CCccEEEeccCCCCccc-cc
Q 001348 513 NLIELNLLYSRIEQLWKG-KKGCKSLRCFPNNIHFRSPISLNFSYCVNFK-EFPQIS---GNVRELYLRGTPIEYVP-SS 586 (1094)
Q Consensus 513 ~L~~L~L~~n~i~~l~~~-~~~l~~L~~~~~~~~~~~l~~L~Ls~~~~l~-~~p~~~---~~L~~L~L~~~~l~~lp-~~ 586 (1094)
+|++|+|++|+++.+... +..+++|+ .|++++|..-. ..|... .+|++|+|++|.++.++ ..
T Consensus 125 ~L~~L~Ls~N~l~~l~~~~~~~L~~L~------------~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 192 (635)
T 4g8a_A 125 SLQKLVAVETNLASLENFPIGHLKTLK------------ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 192 (635)
T ss_dssp TCCEEECTTSCCCCSTTCCCTTCTTCC------------EEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred CCCEEECCCCcCCCCChhhhhcCcccC------------eeccccCccccCCCchhhccchhhhhhcccCcccccccccc
Confidence 999999999999887654 67777777 66665553211 122222 25555666555555432 22
Q ss_pred cccccc---------------------------cceeecccc--------------------------------------
Q 001348 587 IDCLAK---------------------------LEYLDLGHC-------------------------------------- 601 (1094)
Q Consensus 587 i~~L~~---------------------------L~~L~L~~~-------------------------------------- 601 (1094)
+..+.+ +..|++.+|
T Consensus 193 l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~ 272 (635)
T 4g8a_A 193 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 272 (635)
T ss_dssp GHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCT
T ss_pred ccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccc
Confidence 221111 111222111
Q ss_pred --------------------------------------------cccccchhhhhcCCcccEEeccCCcccCccc-----
Q 001348 602 --------------------------------------------TILESISTSICKLKSLLKLCLDNCSKLESFP----- 632 (1094)
Q Consensus 602 --------------------------------------------~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p----- 632 (1094)
.+.. + ..+....+|+.|++.+|......+
T Consensus 273 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 350 (635)
T 4g8a_A 273 SALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER-V-KDFSYNFGWQHLELVNCKFGQFPTLKLKS 350 (635)
T ss_dssp TTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEE-C-GGGGSCCCCSEEEEESCEESSCCCCBCTT
T ss_pred cccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccc-c-cccccchhhhhhhcccccccCcCcccchh
Confidence 0000 0 012233456666666654332211
Q ss_pred --------------hhhcccCccceeeccCcccc---cccchhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCC
Q 001348 633 --------------EILEKMGCLEDIDLEGTAIT---ELPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANE 695 (1094)
Q Consensus 633 --------------~~l~~l~~L~~L~L~~~~i~---~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~ 695 (1094)
....++++|+.|++++|.+. ..+.....+.+|+.|++..+.... ++..+..+++|+.+++..
T Consensus 351 L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~ 429 (635)
T 4g8a_A 351 LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQH 429 (635)
T ss_dssp CCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTT
T ss_pred hhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhh
Confidence 12335677888888887765 334455666677777766654322 333455566666666655
Q ss_pred ccCccC--CccccCCCCCcEEEccCCCCCCC-CCCCCCCCCCCEEeCCCCCCCC--CCccccCCCCCCeeecCCCCCccc
Q 001348 696 SAISQL--PSSITNLNELQVVWCSGCRGLIL-PPSFSGLSYLTELDLSCCNLIE--IPQDIGCLSLLRSLDLRKNNFEYL 770 (1094)
Q Consensus 696 ~~i~~~--p~~l~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~Ls~n~l~~--lp~~l~~l~~L~~L~L~~n~l~~l 770 (1094)
+..... +..+..+++|+.++++.|..... +..+..+++|+.|+|++|++.. +|..+..+++|+.|+|++|+++.+
T Consensus 430 ~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l 509 (635)
T 4g8a_A 430 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 509 (635)
T ss_dssp SEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCc
Confidence 544432 23345555666666665554322 3334555566666666554332 344455556666666666666544
Q ss_pred -chhhcCCCCCCEEEccCCCCCCCCCccccccccccccccccccccC
Q 001348 771 -PASMKHLSKLKSLDLSCCNMLQSLPELPLQLKFLQAKDCKQLQSLP 816 (1094)
Q Consensus 771 -p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~~~c~~l~~~~ 816 (1094)
|..+.++++|++|+|++|++.+..|..+..|+.|...++..+....
T Consensus 510 ~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~ 556 (635)
T 4g8a_A 510 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 556 (635)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCB
T ss_pred ChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCC
Confidence 3345556666666666665555444444444444444444444433
No 47
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=4.6e-24 Score=259.59 Aligned_cols=224 Identities=23% Similarity=0.238 Sum_probs=165.5
Q ss_pred EEeccCCCCCcccCCccCCccEEEeccCCCCccccccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCc
Q 001348 551 SLNFSYCVNFKEFPQISGNVRELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLES 630 (1094)
Q Consensus 551 ~L~Ls~~~~l~~~p~~~~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~ 630 (1094)
+|++++|. ++.+|..+.+|++|+|++|.++.+|. .+++|++|++++|.+.. +|.. +++|++|++++|.+. .
T Consensus 85 ~L~Ls~N~-l~~lp~~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~-~ 155 (622)
T 3g06_A 85 TLEVSGNQ-LTSLPVLPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLA-S 155 (622)
T ss_dssp EEEECSCC-CSCCCCCCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-C
T ss_pred EEEcCCCc-CCcCCCCCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCC-C
Confidence 44444443 33444444467777777777777766 45677777777776544 5542 477778888777554 3
Q ss_pred cchhhcccCccceeeccCcccccccchhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccCCccccCCCC
Q 001348 631 FPEILEKMGCLEDIDLEGTAITELPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQLPSSITNLNE 710 (1094)
Q Consensus 631 ~p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p~~l~~l~~ 710 (1094)
+|. .+++|+.|++++|.++.+| ..+++|+.|++++|.+.+ +|.. +++|+.|++++|.++.+|.. +++
T Consensus 156 l~~---~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~l~~~---~~~ 222 (622)
T 3g06_A 156 LPA---LPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSLPAL---PSG 222 (622)
T ss_dssp CCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSCCCC---CTT
T ss_pred cCC---ccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccccCCC---CCC
Confidence 443 3456788888888888877 456788888888876543 5543 46788888888888888753 478
Q ss_pred CcEEEccCCCCCCCCCCCCCCCCCCEEeCCCCCCCCCCccccCCCCCCeeecCCCCCcccchhhcCCCCCCEEEccCCCC
Q 001348 711 LQVVWCSGCRGLILPPSFSGLSYLTELDLSCCNLIEIPQDIGCLSLLRSLDLRKNNFEYLPASMKHLSKLKSLDLSCCNM 790 (1094)
Q Consensus 711 L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~~~~ 790 (1094)
|+.|++++|....+| ..+++|+.|+|++|+++.+|. .+++|+.|+|++|+|+.+|..+..+++|+.|+|++|++
T Consensus 223 L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 223 LKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp CCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred CCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCC
Confidence 889999998877777 456889999999999999887 57889999999999999999999999999999999998
Q ss_pred CCCCCccccccc
Q 001348 791 LQSLPELPLQLK 802 (1094)
Q Consensus 791 l~~lp~~~~~L~ 802 (1094)
.+..|..+..+.
T Consensus 297 ~~~~~~~l~~L~ 308 (622)
T 3g06_A 297 SERTLQALREIT 308 (622)
T ss_dssp CHHHHHHHHHHH
T ss_pred CCcCHHHHHhcc
Confidence 877776554443
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=3.2e-25 Score=249.19 Aligned_cols=225 Identities=19% Similarity=0.287 Sum_probs=197.9
Q ss_pred CccEEEecc-CCCC-ccccccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeec
Q 001348 569 NVRELYLRG-TPIE-YVPSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDL 646 (1094)
Q Consensus 569 ~L~~L~L~~-~~l~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L 646 (1094)
+|++|+|++ |.+. .+|..++++++|++|+|++|.+.+.+|..+.++++|++|++++|.+.+.+|..+.++++|++|++
T Consensus 77 ~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 156 (313)
T 1ogq_A 77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156 (313)
T ss_dssp TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEEC
Confidence 677888885 7666 67888999999999999999988889999999999999999999988889999999999999999
Q ss_pred cCcccc-cccchhhccC-CCcEEecCCCCCCCCCCccccCCCcccEEecCCccCcc-CCccccCCCCCcEEEccCCCCCC
Q 001348 647 EGTAIT-ELPSSIEYLG-GLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQ-LPSSITNLNELQVVWCSGCRGLI 723 (1094)
Q Consensus 647 ~~~~i~-~lp~~l~~l~-~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~-~p~~l~~l~~L~~L~l~~~~~~~ 723 (1094)
++|.++ .+|..+..++ +|+.|++++|.+.+.+|..+..++ |+.|++++|.++. .|..+..+++|+.|++++|....
T Consensus 157 ~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 235 (313)
T 1ogq_A 157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235 (313)
T ss_dssp CSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC
T ss_pred cCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee
Confidence 999998 8898999998 999999999988888899998887 9999999998884 56778899999999999998765
Q ss_pred CCCCCCCCCCCCEEeCCCCCCC-CCCccccCCCCCCeeecCCCCCc-ccchhhcCCCCCCEEEccCCCCCCCCC
Q 001348 724 LPPSFSGLSYLTELDLSCCNLI-EIPQDIGCLSLLRSLDLRKNNFE-YLPASMKHLSKLKSLDLSCCNMLQSLP 795 (1094)
Q Consensus 724 lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~~~~l~~lp 795 (1094)
.++.+..+++|++|+|++|.++ .+|..+..+++|+.|+|++|+++ .+|.. ..+++|+.|++++|+.+...|
T Consensus 236 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 236 DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp BGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred ecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 5566888999999999999998 68989999999999999999998 77764 889999999999998554433
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=1.3e-24 Score=245.70 Aligned_cols=218 Identities=26% Similarity=0.383 Sum_probs=150.8
Q ss_pred CccEEEeccCCCCccccccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccC
Q 001348 569 NVRELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEG 648 (1094)
Q Consensus 569 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~ 648 (1094)
+++.|+|+++.+..+|..++.+++|++|+|++|.+. .+|..++++++|++|+|++|.+. .+|..++++++|++|++
T Consensus 82 ~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L-- 157 (328)
T 4fcg_A 82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI-- 157 (328)
T ss_dssp TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE--
T ss_pred ceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC--
Confidence 566777777777666666666666666666666654 55555555555555555555443 44444555555555554
Q ss_pred cccccccchhhccCCCcEEecCCCCCCCCCCcccc---------CCCcccEEecCCccCccCCccccCCCCCcEEEccCC
Q 001348 649 TAITELPSSIEYLGGLTTLNLTGCSKLDNLPENLG---------NLKSLKMLCANESAISQLPSSITNLNELQVVWCSGC 719 (1094)
Q Consensus 649 ~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~---------~l~~L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~ 719 (1094)
++|+..+.+|..+. ++++|+.|++++|.++.+|..+..+++|+.|++++|
T Consensus 158 ---------------------~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N 216 (328)
T 4fcg_A 158 ---------------------RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS 216 (328)
T ss_dssp ---------------------EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESS
T ss_pred ---------------------CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCC
Confidence 44444444444433 477777777777777777777777777888888777
Q ss_pred CCCCCCCCCCCCCCCCEEeCCCCCCCC-CCccccCCCCCCeeecCCCCCc-ccchhhcCCCCCCEEEccCCCCCCCCCcc
Q 001348 720 RGLILPPSFSGLSYLTELDLSCCNLIE-IPQDIGCLSLLRSLDLRKNNFE-YLPASMKHLSKLKSLDLSCCNMLQSLPEL 797 (1094)
Q Consensus 720 ~~~~lp~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~~~~l~~lp~~ 797 (1094)
....+|..+..+++|++|+|++|++.. +|..++.+++|+.|+|++|++. .+|..+..+++|+.|+|++|++++.+|..
T Consensus 217 ~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~ 296 (328)
T 4fcg_A 217 PLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296 (328)
T ss_dssp CCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG
T ss_pred CCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH
Confidence 777777777778888888888876654 6777788888888888887654 77777888888888888888888888887
Q ss_pred cccccccccccccc
Q 001348 798 PLQLKFLQAKDCKQ 811 (1094)
Q Consensus 798 ~~~L~~L~~~~c~~ 811 (1094)
+.+|..|....++.
T Consensus 297 l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 297 IAQLPANCIILVPP 310 (328)
T ss_dssp GGGSCTTCEEECCG
T ss_pred HhhccCceEEeCCH
Confidence 77777776665543
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.92 E-value=5.6e-24 Score=241.44 Aligned_cols=221 Identities=19% Similarity=0.259 Sum_probs=157.4
Q ss_pred CccEEEeccCCCCccc-cccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeecc
Q 001348 569 NVRELYLRGTPIEYVP-SSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLE 647 (1094)
Q Consensus 569 ~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~ 647 (1094)
+|++|+|++|.+..++ ..+.++++|++|+|++|.+.+..|..++++++|++|++++|.+. .+|..+. ++|++|+++
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~ 131 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIH 131 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECC
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECC
Confidence 6677777777777664 46777777777777777776666777777777777777776654 4554443 677777777
Q ss_pred Ccccccccch-hhccCCCcEEecCCCCCC--CCCCccccCCCcccEEecCCccCccCCccccCCCCCcEEEccCCCCCCC
Q 001348 648 GTAITELPSS-IEYLGGLTTLNLTGCSKL--DNLPENLGNLKSLKMLCANESAISQLPSSITNLNELQVVWCSGCRGLIL 724 (1094)
Q Consensus 648 ~~~i~~lp~~-l~~l~~L~~L~L~~~~~~--~~lp~~l~~l~~L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~~~~l 724 (1094)
+|.++.+|.. +..+++|++|++++|.+. +..|..+..+ +|+.|++++|.++.+|..+. ++|+.|++++|....+
T Consensus 132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~ 208 (332)
T 2ft3_A 132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAI 208 (332)
T ss_dssp SSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCC
T ss_pred CCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCcc
Confidence 7777777653 677777777777777663 3556666666 77777777777777776554 6777777777776555
Q ss_pred C-CCCCCCCCCCEEeCCCCCCCCCCc-cccCCCCCCeeecCCCCCcccchhhcCCCCCCEEEccCCCCCCCCC
Q 001348 725 P-PSFSGLSYLTELDLSCCNLIEIPQ-DIGCLSLLRSLDLRKNNFEYLPASMKHLSKLKSLDLSCCNMLQSLP 795 (1094)
Q Consensus 725 p-~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp 795 (1094)
+ ..+..+++|+.|+|++|.++.++. .+..+++|+.|+|++|+++.+|..+..+++|+.|+|++|++....+
T Consensus 209 ~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~ 281 (332)
T 2ft3_A 209 ELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGV 281 (332)
T ss_dssp CTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCT
T ss_pred CHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccCh
Confidence 4 457777777777777777777654 5677777777777777777777777777777777777777654433
No 51
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.91 E-value=3.8e-23 Score=234.34 Aligned_cols=258 Identities=17% Similarity=0.188 Sum_probs=132.0
Q ss_pred cccceeeccccccccccccCCCCCcCcccCCCCCCCCCeEEeccCCCCCcccCC-cc---CCccEEEeccCCCCcc-ccc
Q 001348 512 ENLIELNLLYSRIEQLWKGKKGCKSLRCFPNNIHFRSPISLNFSYCVNFKEFPQ-IS---GNVRELYLRGTPIEYV-PSS 586 (1094)
Q Consensus 512 ~~L~~L~L~~n~i~~l~~~~~~l~~L~~~~~~~~~~~l~~L~Ls~~~~l~~~p~-~~---~~L~~L~L~~~~l~~l-p~~ 586 (1094)
.+|+.++++++.++.++..+. +.|+ .|+++++. ++.++. .+ .+|++|+|++|.+..+ |..
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~--~~l~------------~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLP--PDTA------------LLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGA 95 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCC--TTCC------------EEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT
T ss_pred CCCeEEEecCCCccccCccCC--CCCe------------EEECCCCc-CCEeChhhhccCCCCCEEECCCCcCCeeCHHH
Confidence 467777777777666544322 2333 55555553 333322 11 1555555555555554 445
Q ss_pred cccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccCcccc---cccchhhccCC
Q 001348 587 IDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEGTAIT---ELPSSIEYLGG 663 (1094)
Q Consensus 587 i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~---~lp~~l~~l~~ 663 (1094)
++.+++|++|++++|.+. .+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.++ ..+..+..+++
T Consensus 96 ~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~ 172 (330)
T 1xku_A 96 FAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172 (330)
T ss_dssp TTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTT
T ss_pred hcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCC
Confidence 555555555555555543 3443332 45555555555555444445555555555555555554 22344555555
Q ss_pred CcEEecCCCCCCCCCCccccCCCcccEEecCCccCccC-CccccCCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeCCC
Q 001348 664 LTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQL-PSSITNLNELQVVWCSGCRGLILPP-SFSGLSYLTELDLSC 741 (1094)
Q Consensus 664 L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~-p~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~Ls~ 741 (1094)
|++|++++|.+. .+|..+. ++|+.|++++|.++.+ |..+..+++|+.|++++|....++. .+..+++|+.|+|++
T Consensus 173 L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 249 (330)
T 1xku_A 173 LSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 249 (330)
T ss_dssp CCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCS
T ss_pred cCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCC
Confidence 555555555433 2333332 4555555555555544 3445555555555555555443332 455555555555555
Q ss_pred CCCCCCCccccCCCCCCeeecCCCCCcccchh-hc------CCCCCCEEEccCCCC
Q 001348 742 CNLIEIPQDIGCLSLLRSLDLRKNNFEYLPAS-MK------HLSKLKSLDLSCCNM 790 (1094)
Q Consensus 742 n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-l~------~l~~L~~L~L~~~~~ 790 (1094)
|.++.+|..+..+++|+.|+|++|+++.+|.. +. ..+.|+.|++++|+.
T Consensus 250 N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 250 NKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp SCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred CcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcc
Confidence 55555555555555555555555555554432 11 124555555555554
No 52
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=7e-24 Score=239.73 Aligned_cols=215 Identities=27% Similarity=0.410 Sum_probs=160.1
Q ss_pred CCeEEeccCCCCCcccCCccC---CccEEEeccCCCCccccccccccccceeecccccccccchhhhhcCCcccEEeccC
Q 001348 548 SPISLNFSYCVNFKEFPQISG---NVRELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDN 624 (1094)
Q Consensus 548 ~l~~L~Ls~~~~l~~~p~~~~---~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~ 624 (1094)
.++.|+++++. +..+|.... +|++|+|++|.+..+|..++.+++|++|+|++|.+. .+|..++++++|++|++++
T Consensus 82 ~l~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 82 GRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA 159 (328)
T ss_dssp TCCEEEEESSC-CSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEE
T ss_pred ceeEEEccCCC-chhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCC
Confidence 34499999985 567776544 899999999999999999999999999999999887 7899999999999999999
Q ss_pred CcccCccchhhcc---------cCccceeeccCcccccccchhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCC
Q 001348 625 CSKLESFPEILEK---------MGCLEDIDLEGTAITELPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANE 695 (1094)
Q Consensus 625 ~~~~~~~p~~l~~---------l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~ 695 (1094)
|...+.+|..+.. +++|++|++++|.++.+|..++.+++|++|+|++|
T Consensus 160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N----------------------- 216 (328)
T 4fcg_A 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS----------------------- 216 (328)
T ss_dssp ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESS-----------------------
T ss_pred CCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCC-----------------------
Confidence 9999999987664 56666666666655555555555555555555554
Q ss_pred ccCccCCccccCCCCCcEEEccCCC-CCCCCCCCCCCCCCCEEeCCCCCCC-CCCccccCCCCCCeeecCCCCCc-ccch
Q 001348 696 SAISQLPSSITNLNELQVVWCSGCR-GLILPPSFSGLSYLTELDLSCCNLI-EIPQDIGCLSLLRSLDLRKNNFE-YLPA 772 (1094)
Q Consensus 696 ~~i~~~p~~l~~l~~L~~L~l~~~~-~~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~ 772 (1094)
.++.+|..+..+++|+.|++++|. ...+|..+.++++|+.|+|++|++. .+|..++.+++|+.|+|++|++. .+|.
T Consensus 217 -~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~ 295 (328)
T 4fcg_A 217 -PLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295 (328)
T ss_dssp -CCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG
T ss_pred -CCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH
Confidence 444444455555555555555544 3345566777777777777777655 47777777888888888887654 7788
Q ss_pred hhcCCCCCCEEEccCC
Q 001348 773 SMKHLSKLKSLDLSCC 788 (1094)
Q Consensus 773 ~l~~l~~L~~L~L~~~ 788 (1094)
++..+++|+.+++..+
T Consensus 296 ~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 296 LIAQLPANCIILVPPH 311 (328)
T ss_dssp GGGGSCTTCEEECCGG
T ss_pred HHhhccCceEEeCCHH
Confidence 8888888888877754
No 53
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.90 E-value=1.9e-22 Score=249.99 Aligned_cols=236 Identities=24% Similarity=0.217 Sum_probs=193.7
Q ss_pred CccEEEeccCCCCccccccccccccceeecccccccccchhhhhcCCcccEEeccCCcccC--ccchhhcccCccceeec
Q 001348 569 NVRELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLE--SFPEILEKMGCLEDIDL 646 (1094)
Q Consensus 569 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~--~~p~~l~~l~~L~~L~L 646 (1094)
+|+.|++.++.+..++. ..+..|+.+++.+|...... ....+++|+.|++++|.... ..+..+..+.+|++|++
T Consensus 329 ~L~~L~l~~~~~~~~~~--~~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~ 404 (635)
T 4g8a_A 329 GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDL 404 (635)
T ss_dssp CCSEEEEESCEESSCCC--CBCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEEC
T ss_pred hhhhhhcccccccCcCc--ccchhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhc
Confidence 57788888887776654 35678999999988754432 24569999999999987643 45667788899999999
Q ss_pred cCcccccccchhhccCCCcEEecCCCCCCCCCC-ccccCCCcccEEecCCccCccC-CccccCCCCCcEEEccCCCC--C
Q 001348 647 EGTAITELPSSIEYLGGLTTLNLTGCSKLDNLP-ENLGNLKSLKMLCANESAISQL-PSSITNLNELQVVWCSGCRG--L 722 (1094)
Q Consensus 647 ~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp-~~l~~l~~L~~L~l~~~~i~~~-p~~l~~l~~L~~L~l~~~~~--~ 722 (1094)
..+.+..++..+..+++|+.+++..+......+ ..+..+.+|+.++++.|.+..+ +..+..+++|+.|++++|.. .
T Consensus 405 ~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~ 484 (635)
T 4g8a_A 405 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 484 (635)
T ss_dssp CSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG
T ss_pred cccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccc
Confidence 999999888889999999999999887766554 4578899999999999999865 56678899999999999873 3
Q ss_pred CCCCCCCCCCCCCEEeCCCCCCCCC-CccccCCCCCCeeecCCCCCcccch-hhcCCCCCCEEEccCCCCCCCCCcccc-
Q 001348 723 ILPPSFSGLSYLTELDLSCCNLIEI-PQDIGCLSLLRSLDLRKNNFEYLPA-SMKHLSKLKSLDLSCCNMLQSLPELPL- 799 (1094)
Q Consensus 723 ~lp~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~~~~l~~lp~~~~- 799 (1094)
..|..+..+++|++|+|++|+++.+ |..++.+++|+.|+|++|+|+.++. .+..+++|++|+|++|++.+..|..+.
T Consensus 485 ~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 564 (635)
T 4g8a_A 485 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 564 (635)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTC
T ss_pred cCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHh
Confidence 4677899999999999999999986 5668999999999999999998864 688999999999999999988887554
Q ss_pred ---ccccccccc
Q 001348 800 ---QLKFLQAKD 808 (1094)
Q Consensus 800 ---~L~~L~~~~ 808 (1094)
+|+.|++.+
T Consensus 565 l~~~L~~L~L~~ 576 (635)
T 4g8a_A 565 FPSSLAFLNLTQ 576 (635)
T ss_dssp CCTTCCEEECTT
T ss_pred hhCcCCEEEeeC
Confidence 455555544
No 54
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=1.5e-22 Score=246.18 Aligned_cols=264 Identities=20% Similarity=0.218 Sum_probs=209.5
Q ss_pred CceEEEEeCCCCCCccccccccccCCccccCcccccEEEecCCCCCCCCCCCCccccceeeccccccccccccCCCCCcC
Q 001348 458 NLRFLKFYMPKLFGISDMVCKLHLPQGLQYLSDELRYLHWHGYPLKMLPSNFTPENLIELNLLYSRIEQLWKGKKGCKSL 537 (1094)
Q Consensus 458 ~Lr~L~l~~n~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~i~~l~~~~~~l~~L 537 (1094)
+++.|++++|.++ .+|..+. ++|++|++++|.++.+|. .+.+|++|+|++|+|+.++. .+++|
T Consensus 41 ~l~~L~ls~n~L~---------~lp~~l~---~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L 103 (622)
T 3g06_A 41 GNAVLNVGESGLT---------TLPDCLP---AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV---LPPGL 103 (622)
T ss_dssp CCCEEECCSSCCS---------CCCSCCC---TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC---CCTTC
T ss_pred CCcEEEecCCCcC---------ccChhhC---CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC---CCCCC
Confidence 4677777777764 3444332 578888888888888887 56788888888888877654 44556
Q ss_pred cccCCCCCCCCCeEEeccCCCCCcccCCccCCccEEEeccCCCCccccccccccccceeecccccccccchhhhhcCCcc
Q 001348 538 RCFPNNIHFRSPISLNFSYCVNFKEFPQISGNVRELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILESISTSICKLKSL 617 (1094)
Q Consensus 538 ~~~~~~~~~~~l~~L~Ls~~~~l~~~p~~~~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L 617 (1094)
+ .|++++|. +..+|....+|+.|+|++|.++.+|.. +++|++|+|++|.+.+ +|. .+.+|
T Consensus 104 ~------------~L~Ls~N~-l~~l~~~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L 163 (622)
T 3g06_A 104 L------------ELSIFSNP-LTHLPALPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LPA---LPSEL 163 (622)
T ss_dssp C------------EEEECSCC-CCCCCCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSC-CCC---CCTTC
T ss_pred C------------EEECcCCc-CCCCCCCCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCC-cCC---ccCCC
Confidence 5 88888773 666777666899999999999998875 4789999999997654 454 35789
Q ss_pred cEEeccCCcccCccchhhcccCccceeeccCcccccccchhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCcc
Q 001348 618 LKLCLDNCSKLESFPEILEKMGCLEDIDLEGTAITELPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESA 697 (1094)
Q Consensus 618 ~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~ 697 (1094)
+.|++++|.+.. +| ..+++|+.|++++|.++.+|.. +++|+.|++++|.+. .+|.. +++|+.|++++|.
T Consensus 164 ~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~ 232 (622)
T 3g06_A 164 CKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNR 232 (622)
T ss_dssp CEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSC
T ss_pred CEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCccc-ccCCC---CCCCCEEEccCCc
Confidence 999999987654 56 5578899999999999988864 578999999998654 55543 4789999999999
Q ss_pred CccCCccccCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeCCCCCCCCCCccccCCCCCCeeecCCCCCcc-cchhhc
Q 001348 698 ISQLPSSITNLNELQVVWCSGCRGLILPPSFSGLSYLTELDLSCCNLIEIPQDIGCLSLLRSLDLRKNNFEY-LPASMK 775 (1094)
Q Consensus 698 i~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~-lp~~l~ 775 (1094)
++.+| ..+++|+.|++++|....+|. .+++|+.|+|++|+++.+|..+..+++|+.|+|++|.++. .|..+.
T Consensus 233 L~~lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 233 LTSLP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp CSCCC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred cCcCC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 99988 456899999999999888887 6789999999999999999999999999999999999984 444443
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.89 E-value=1.7e-22 Score=226.39 Aligned_cols=241 Identities=21% Similarity=0.271 Sum_probs=201.5
Q ss_pred EEeccCCCCCcccCCccC-CccEEEeccCCCCccccc-cccccccceeecccccccc--cchhhhhcCCcccEEeccCCc
Q 001348 551 SLNFSYCVNFKEFPQISG-NVRELYLRGTPIEYVPSS-IDCLAKLEYLDLGHCTILE--SISTSICKLKSLLKLCLDNCS 626 (1094)
Q Consensus 551 ~L~Ls~~~~l~~~p~~~~-~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~~~--~lp~~i~~l~~L~~L~L~~~~ 626 (1094)
.++.++. .++.+|.... +|++|+|++|.++.+|.. +..+++|++|+|++|.+.. ..|..+..+++|++|++++|.
T Consensus 11 ~l~c~~~-~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 11 EIRCNSK-GLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89 (306)
T ss_dssp EEECCSS-CCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred EEEcCCC-CcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence 3444333 3555554333 899999999999999876 6899999999999998763 336677789999999999987
Q ss_pred ccCccchhhcccCccceeeccCcccccccc--hhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCcc--CC
Q 001348 627 KLESFPEILEKMGCLEDIDLEGTAITELPS--SIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQ--LP 702 (1094)
Q Consensus 627 ~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~--~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~--~p 702 (1094)
+. .+|..+..+++|++|++++|.++.++. .+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++. +|
T Consensus 90 i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 168 (306)
T 2z66_A 90 VI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168 (306)
T ss_dssp EE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred cc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccch
Confidence 65 577778999999999999999998875 78899999999999999888888889999999999999999885 78
Q ss_pred ccccCCCCCcEEEccCCCCCCC-CCCCCCCCCCCEEeCCCCCCCCCCc-cccCCCCCCeeecCCCCCccc-chhhcCCC-
Q 001348 703 SSITNLNELQVVWCSGCRGLIL-PPSFSGLSYLTELDLSCCNLIEIPQ-DIGCLSLLRSLDLRKNNFEYL-PASMKHLS- 778 (1094)
Q Consensus 703 ~~l~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~- 778 (1094)
..+..+++|+.|++++|....+ |..+..+++|+.|+|++|.++.++. .+..+++|+.|+|++|.++.. |..+..++
T Consensus 169 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~ 248 (306)
T 2z66_A 169 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 248 (306)
T ss_dssp SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCT
T ss_pred hHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhc
Confidence 8899999999999999987766 5678899999999999999998765 578899999999999999854 55677774
Q ss_pred CCCEEEccCCCCCCC
Q 001348 779 KLKSLDLSCCNMLQS 793 (1094)
Q Consensus 779 ~L~~L~L~~~~~l~~ 793 (1094)
+|+.|+|++|++...
T Consensus 249 ~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 249 SLAFLNLTQNDFACT 263 (306)
T ss_dssp TCCEEECTTCCEECS
T ss_pred cCCEEEccCCCeecc
Confidence 899999999987654
No 56
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.89 E-value=1.1e-25 Score=267.83 Aligned_cols=357 Identities=17% Similarity=0.159 Sum_probs=255.7
Q ss_pred ecccccccccccCcc-ccCCCCCceEEEEeCCCCCCccccccccccCCccccCcccccEEEecCCCCCCCC--CCC-Ccc
Q 001348 437 FLDLSKIRDINLNPQ-AFANMPNLRFLKFYMPKLFGISDMVCKLHLPQGLQYLSDELRYLHWHGYPLKMLP--SNF-TPE 512 (1094)
Q Consensus 437 ~ldls~~~~~~l~~~-~f~~l~~Lr~L~l~~n~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp--~~~-~~~ 512 (1094)
.+|++.+........ .|..+++|+.|++++|.+... ....++..+..+ ++|++|++++|.++... ..+ .+.
T Consensus 7 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~----~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 7 SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEA----RCKDISSALRVN-PALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHH----HHHHHHHHHHTC-TTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHH----HHHHHHHHHHhC-CCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 456665543333333 378899999999999987531 111344445554 36999999999886421 111 122
Q ss_pred ----ccceeecccccccc-----ccccCCCCCcCcccCCCCCCCCCeEEeccCCCCCcc----cCC----ccCCccEEEe
Q 001348 513 ----NLIELNLLYSRIEQ-----LWKGKKGCKSLRCFPNNIHFRSPISLNFSYCVNFKE----FPQ----ISGNVRELYL 575 (1094)
Q Consensus 513 ----~L~~L~L~~n~i~~-----l~~~~~~l~~L~~~~~~~~~~~l~~L~Ls~~~~l~~----~p~----~~~~L~~L~L 575 (1094)
+|++|+|++|++.. +...+..+++|+ .|++++|..-.. +.. ...+|++|+|
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~------------~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L 149 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQ------------ELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQL 149 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCC------------EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCcee------------EEECCCCcCchHHHHHHHHHHhcCCCcceEEEC
Confidence 69999999999883 456677788888 999999873211 111 1226999999
Q ss_pred ccCCCCc-----cccccccccccceeecccccccccchhhhh-----cCCcccEEeccCCcccCc----cchhhcccCcc
Q 001348 576 RGTPIEY-----VPSSIDCLAKLEYLDLGHCTILESISTSIC-----KLKSLLKLCLDNCSKLES----FPEILEKMGCL 641 (1094)
Q Consensus 576 ~~~~l~~-----lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~-----~l~~L~~L~L~~~~~~~~----~p~~l~~l~~L 641 (1094)
++|.+.. ++..+..+++|++|++++|.+....+..+. .+++|++|++++|.+... ++..+..+++|
T Consensus 150 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 229 (461)
T 1z7x_W 150 EYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASL 229 (461)
T ss_dssp TTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTC
T ss_pred CCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCc
Confidence 9998885 466677889999999999987665444443 266999999999987764 67788889999
Q ss_pred ceeeccCcccccc-----cch-hhccCCCcEEecCCCCCCCC----CCccccCCCcccEEecCCccCccC-----Ccccc
Q 001348 642 EDIDLEGTAITEL-----PSS-IEYLGGLTTLNLTGCSKLDN----LPENLGNLKSLKMLCANESAISQL-----PSSIT 706 (1094)
Q Consensus 642 ~~L~L~~~~i~~l-----p~~-l~~l~~L~~L~L~~~~~~~~----lp~~l~~l~~L~~L~l~~~~i~~~-----p~~l~ 706 (1094)
++|++++|.++.. +.. ...+++|++|++++|.+... ++..+..+++|++|++++|.++.. ...+.
T Consensus 230 ~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 309 (461)
T 1z7x_W 230 RELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLL 309 (461)
T ss_dssp CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHT
T ss_pred cEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhc
Confidence 9999999988743 222 33588999999999976653 677788899999999999988632 22222
Q ss_pred -CCCCCcEEEccCCCCCC-----CCCCCCCCCCCCEEeCCCCCCCCC-Cc----ccc-CCCCCCeeecCCCCCc-----c
Q 001348 707 -NLNELQVVWCSGCRGLI-----LPPSFSGLSYLTELDLSCCNLIEI-PQ----DIG-CLSLLRSLDLRKNNFE-----Y 769 (1094)
Q Consensus 707 -~l~~L~~L~l~~~~~~~-----lp~~l~~l~~L~~L~Ls~n~l~~l-p~----~l~-~l~~L~~L~L~~n~l~-----~ 769 (1094)
..++|+.|++++|.... ++..+..+++|++|+|++|.+++. +. .+. ..++|+.|+|++|.++ .
T Consensus 310 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~ 389 (461)
T 1z7x_W 310 EPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSS 389 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHH
T ss_pred cCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHH
Confidence 33699999999998543 345566789999999999988752 22 222 2679999999999998 6
Q ss_pred cchhhcCCCCCCEEEccCCCCCCC--------CCccccccccccccccc
Q 001348 770 LPASMKHLSKLKSLDLSCCNMLQS--------LPELPLQLKFLQAKDCK 810 (1094)
Q Consensus 770 lp~~l~~l~~L~~L~L~~~~~l~~--------lp~~~~~L~~L~~~~c~ 810 (1094)
+|..+..+++|++|+|++|++... +|....+|+.|.+.++.
T Consensus 390 l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 390 LAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp HHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred HHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccc
Confidence 888888899999999999987543 33334456666665543
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.89 E-value=3e-22 Score=236.42 Aligned_cols=232 Identities=24% Similarity=0.293 Sum_probs=203.6
Q ss_pred CCcccCCccC-CccEEEeccCCCCccc-cccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhc
Q 001348 559 NFKEFPQISG-NVRELYLRGTPIEYVP-SSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILE 636 (1094)
Q Consensus 559 ~l~~~p~~~~-~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~ 636 (1094)
.++.+|.... +++.|+|++|.+..++ ..+.++++|++|+|++|.+....+..|.++++|++|+|++|.+....+..+.
T Consensus 54 ~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 133 (440)
T 3zyj_A 54 NLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFV 133 (440)
T ss_dssp CCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSC
T ss_pred CcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhh
Confidence 4556665444 8999999999999885 6789999999999999998888888899999999999999987766667899
Q ss_pred ccCccceeeccCcccccccc-hhhccCCCcEEecCCCCCCCCCCc-cccCCCcccEEecCCccCccCCccccCCCCCcEE
Q 001348 637 KMGCLEDIDLEGTAITELPS-SIEYLGGLTTLNLTGCSKLDNLPE-NLGNLKSLKMLCANESAISQLPSSITNLNELQVV 714 (1094)
Q Consensus 637 ~l~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~-~l~~l~~L~~L~l~~~~i~~~p~~l~~l~~L~~L 714 (1094)
++++|++|+|++|.++.+|. .+..+++|++|++++|+.++.++. .+.++++|+.|++++|.++.+| .+..+++|+.|
T Consensus 134 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L 212 (440)
T 3zyj_A 134 YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDEL 212 (440)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEE
T ss_pred ccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEE
Confidence 99999999999999998876 688999999999999888877766 5889999999999999999987 48899999999
Q ss_pred EccCCCCCCC-CCCCCCCCCCCEEeCCCCCCCCC-CccccCCCCCCeeecCCCCCcccchh-hcCCCCCCEEEccCCCCC
Q 001348 715 WCSGCRGLIL-PPSFSGLSYLTELDLSCCNLIEI-PQDIGCLSLLRSLDLRKNNFEYLPAS-MKHLSKLKSLDLSCCNML 791 (1094)
Q Consensus 715 ~l~~~~~~~l-p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~~~~l 791 (1094)
++++|....+ |..+.++++|+.|+|++|.++.+ +..+..+++|+.|+|++|+++.+|.. +..+++|+.|+|++|++.
T Consensus 213 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 213 DLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred ECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 9999987666 56789999999999999999986 44588899999999999999988754 578999999999999854
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.89 E-value=1.9e-23 Score=239.22 Aligned_cols=224 Identities=18% Similarity=0.202 Sum_probs=102.6
Q ss_pred CccEEEeccCCCCcccc-ccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeecc
Q 001348 569 NVRELYLRGTPIEYVPS-SIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLE 647 (1094)
Q Consensus 569 ~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~ 647 (1094)
+|++|+|++|.++.+|. .+..+++|++|++++|.+.+..|..+.++++|++|++++|.+.+..+..++++++|++|+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 44444444444444433 34444455555555444444444444444455555554444433333334444455555555
Q ss_pred Ccccccccc--hhhccCCCcEEecCCCCCCCCC-CccccCCCcccEEecCCccCccC-CccccCCCCCcEEEccCCCCCC
Q 001348 648 GTAITELPS--SIEYLGGLTTLNLTGCSKLDNL-PENLGNLKSLKMLCANESAISQL-PSSITNLNELQVVWCSGCRGLI 723 (1094)
Q Consensus 648 ~~~i~~lp~--~l~~l~~L~~L~L~~~~~~~~l-p~~l~~l~~L~~L~l~~~~i~~~-p~~l~~l~~L~~L~l~~~~~~~ 723 (1094)
+|.++.+|. .+..+++|++|++++|...+.+ +..+.++++|+.|++++|.++.+ |..+..+++|+.|++++|....
T Consensus 133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 212 (353)
T 2z80_A 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL 212 (353)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc
Confidence 544444443 3444445555555444322222 23444444455555544444433 3444444445555554444333
Q ss_pred CCCC-CCCCCCCCEEeCCCCCCCC--------------------------------CCccccCCCCCCeeecCCCCCccc
Q 001348 724 LPPS-FSGLSYLTELDLSCCNLIE--------------------------------IPQDIGCLSLLRSLDLRKNNFEYL 770 (1094)
Q Consensus 724 lp~~-l~~l~~L~~L~Ls~n~l~~--------------------------------lp~~l~~l~~L~~L~L~~n~l~~l 770 (1094)
+|.. +..+++|+.|+|++|.++. +|..+..+++|+.|+|++|+++.+
T Consensus 213 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i 292 (353)
T 2z80_A 213 LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSV 292 (353)
T ss_dssp HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCC
T ss_pred chhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCcc
Confidence 3322 1224444555555444443 344444455555555555555555
Q ss_pred chhh-cCCCCCCEEEccCCCCCC
Q 001348 771 PASM-KHLSKLKSLDLSCCNMLQ 792 (1094)
Q Consensus 771 p~~l-~~l~~L~~L~L~~~~~l~ 792 (1094)
|..+ ..+++|++|+|++|++.+
T Consensus 293 ~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 293 PDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCC
T ss_pred CHHHHhcCCCCCEEEeeCCCccC
Confidence 4442 445555555555554433
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.88 E-value=3e-22 Score=237.32 Aligned_cols=232 Identities=28% Similarity=0.291 Sum_probs=200.1
Q ss_pred CCcccCCccC-CccEEEeccCCCCcc-ccccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhc
Q 001348 559 NFKEFPQISG-NVRELYLRGTPIEYV-PSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILE 636 (1094)
Q Consensus 559 ~l~~~p~~~~-~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~ 636 (1094)
.++.+|.... +|++|+|++|.+..+ |..+.++++|++|+|++|.+.+..|..|.++++|++|+|++|.+....+..+.
T Consensus 65 ~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 144 (452)
T 3zyi_A 65 GLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFE 144 (452)
T ss_dssp CCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSS
T ss_pred CcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhc
Confidence 3555665443 899999999999987 56789999999999999999888888899999999999999988777777799
Q ss_pred ccCccceeeccCcccccccc-hhhccCCCcEEecCCCCCCCCCCc-cccCCCcccEEecCCccCccCCccccCCCCCcEE
Q 001348 637 KMGCLEDIDLEGTAITELPS-SIEYLGGLTTLNLTGCSKLDNLPE-NLGNLKSLKMLCANESAISQLPSSITNLNELQVV 714 (1094)
Q Consensus 637 ~l~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~-~l~~l~~L~~L~l~~~~i~~~p~~l~~l~~L~~L 714 (1094)
++++|++|+|++|.++.+|. .+.++++|+.|++++|+.++.++. .+.++++|+.|++++|.++.+| .+..+++|+.|
T Consensus 145 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L 223 (452)
T 3zyi_A 145 YLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEEL 223 (452)
T ss_dssp SCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEE
T ss_pred ccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEE
Confidence 99999999999999998876 688999999999999888887776 5889999999999999999886 48888999999
Q ss_pred EccCCCCCCC-CCCCCCCCCCCEEeCCCCCCCCC-CccccCCCCCCeeecCCCCCcccchh-hcCCCCCCEEEccCCCCC
Q 001348 715 WCSGCRGLIL-PPSFSGLSYLTELDLSCCNLIEI-PQDIGCLSLLRSLDLRKNNFEYLPAS-MKHLSKLKSLDLSCCNML 791 (1094)
Q Consensus 715 ~l~~~~~~~l-p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~~~~l 791 (1094)
++++|....+ |..+.++++|+.|+|++|.++.+ |..+..+++|+.|+|++|+++.+|.. +..+++|+.|+|++|++.
T Consensus 224 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 224 EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp ECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred ECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 9999987665 55688999999999999999875 55588899999999999999988754 577899999999998754
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.88 E-value=5.4e-22 Score=219.89 Aligned_cols=223 Identities=24% Similarity=0.297 Sum_probs=165.8
Q ss_pred cEEEeccCCCCccccccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccCcc
Q 001348 571 RELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEGTA 650 (1094)
Q Consensus 571 ~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~ 650 (1094)
+.++.+++.++.+|..+ .++|++|++++|.+.+..+..+.++++|++|++++|.+.+..|..+.++++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 45666666666666544 3567777777776665555566667777777777766665556667777777777777775
Q ss_pred -cccc-cchhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccCCc-cccCCCCCcEEEccCCCCCCCCC-
Q 001348 651 -ITEL-PSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQLPS-SITNLNELQVVWCSGCRGLILPP- 726 (1094)
Q Consensus 651 -i~~l-p~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p~-~l~~l~~L~~L~l~~~~~~~lp~- 726 (1094)
++.+ |..+..+++|++|++++|.+.+..|..+.++++|++|++++|.++.++. .+..+++|+.|++++|....++.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 171 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER 171 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHH
Confidence 6665 4566777777777777777766667777777888888888887777654 36778888888888887766665
Q ss_pred CCCCCCCCCEEeCCCCCCCCC-CccccCCCCCCeeecCCCCCcccch-hhcCCCCCCEEEccCCCCCCCCC
Q 001348 727 SFSGLSYLTELDLSCCNLIEI-PQDIGCLSLLRSLDLRKNNFEYLPA-SMKHLSKLKSLDLSCCNMLQSLP 795 (1094)
Q Consensus 727 ~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~~~~l~~lp 795 (1094)
.+..+++|+.|+|++|.++.+ |..+..+++|+.|+|++|+++.+|. .+..+++|+.|+|++|++....+
T Consensus 172 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred HhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 478889999999999998875 6778889999999999999998875 47889999999999998765443
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.88 E-value=7e-22 Score=221.38 Aligned_cols=237 Identities=24% Similarity=0.246 Sum_probs=202.9
Q ss_pred ccEEEeccCCCCccccccccccccceeecccccccccchhhhhcCCcccEEeccCCcccC--ccchhhcccCccceeecc
Q 001348 570 VRELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLE--SFPEILEKMGCLEDIDLE 647 (1094)
Q Consensus 570 L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~--~~p~~l~~l~~L~~L~L~ 647 (1094)
-+.++.+++.++.+|..+. ++|++|+|++|.+....+..+.++++|++|++++|.+.. ..|..+..+++|++|+++
T Consensus 9 ~~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CCEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 4678999999999998764 689999999999875444557899999999999988663 346778889999999999
Q ss_pred CcccccccchhhccCCCcEEecCCCCCCCCCC-ccccCCCcccEEecCCccCccC-CccccCCCCCcEEEccCCCCCC--
Q 001348 648 GTAITELPSSIEYLGGLTTLNLTGCSKLDNLP-ENLGNLKSLKMLCANESAISQL-PSSITNLNELQVVWCSGCRGLI-- 723 (1094)
Q Consensus 648 ~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp-~~l~~l~~L~~L~l~~~~i~~~-p~~l~~l~~L~~L~l~~~~~~~-- 723 (1094)
+|.++.+|..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+... +..+..+++|+.|++++|....
T Consensus 87 ~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 87 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp SCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred CCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 99999999999999999999999988766544 5789999999999999999855 5678899999999999998654
Q ss_pred CCCCCCCCCCCCEEeCCCCCCCCC-CccccCCCCCCeeecCCCCCcccch-hhcCCCCCCEEEccCCCCCCCCCcccc--
Q 001348 724 LPPSFSGLSYLTELDLSCCNLIEI-PQDIGCLSLLRSLDLRKNNFEYLPA-SMKHLSKLKSLDLSCCNMLQSLPELPL-- 799 (1094)
Q Consensus 724 lp~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~~~~l~~lp~~~~-- 799 (1094)
+|..+..+++|++|+|++|.++.+ |..+..+++|+.|+|++|.++.++. .+..+++|+.|+|++|++.+..|..+.
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 246 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCC
T ss_pred chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhh
Confidence 788899999999999999999986 6678999999999999999998875 678899999999999999887776443
Q ss_pred --ccccccccc
Q 001348 800 --QLKFLQAKD 808 (1094)
Q Consensus 800 --~L~~L~~~~ 808 (1094)
+|+.|++.+
T Consensus 247 ~~~L~~L~L~~ 257 (306)
T 2z66_A 247 PSSLAFLNLTQ 257 (306)
T ss_dssp CTTCCEEECTT
T ss_pred hccCCEEEccC
Confidence 444444433
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.87 E-value=1.2e-23 Score=236.23 Aligned_cols=236 Identities=20% Similarity=0.195 Sum_probs=163.9
Q ss_pred EEeccCCCCCcccCCccC-CccEEEeccCCCCc--cccccc-------cccccceeecccccccccchhhh--hcCCccc
Q 001348 551 SLNFSYCVNFKEFPQISG-NVRELYLRGTPIEY--VPSSID-------CLAKLEYLDLGHCTILESISTSI--CKLKSLL 618 (1094)
Q Consensus 551 ~L~Ls~~~~l~~~p~~~~-~L~~L~L~~~~l~~--lp~~i~-------~L~~L~~L~L~~~~~~~~lp~~i--~~l~~L~ 618 (1094)
.++++++.. .+|.... .|+.|+|++|.+.. +|..+. ++++|++|+|++|.+.+.+|..+ ..+++|+
T Consensus 47 ~l~l~~n~l--~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~ 124 (312)
T 1wwl_A 47 YLLKRVDTE--ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLN 124 (312)
T ss_dssp THHHHCCTT--CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCS
T ss_pred eEeeccccc--ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCcc
Confidence 444554443 3443222 46677777766643 455444 57778888888887777777765 6777888
Q ss_pred EEeccCCcccCccchhhccc-----CccceeeccCccccccc-chhhccCCCcEEecCCCCCCCC--CCccc--cCCCcc
Q 001348 619 KLCLDNCSKLESFPEILEKM-----GCLEDIDLEGTAITELP-SSIEYLGGLTTLNLTGCSKLDN--LPENL--GNLKSL 688 (1094)
Q Consensus 619 ~L~L~~~~~~~~~p~~l~~l-----~~L~~L~L~~~~i~~lp-~~l~~l~~L~~L~L~~~~~~~~--lp~~l--~~l~~L 688 (1094)
+|++++|.+.+. |..++.+ ++|++|++++|.++.++ ..++.+++|++|++++|.+.+. +|..+ +.+++|
T Consensus 125 ~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L 203 (312)
T 1wwl_A 125 ILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTL 203 (312)
T ss_dssp EEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTC
T ss_pred EEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCC
Confidence 888887776665 6767666 77888888888877666 5677788888888887776554 23333 677788
Q ss_pred cEEecCCccCccCC----ccccCCCCCcEEEccCCCCCCCC--CCCCCCCCCCEEeCCCCCCCCCCccccCCCCCCeeec
Q 001348 689 KMLCANESAISQLP----SSITNLNELQVVWCSGCRGLILP--PSFSGLSYLTELDLSCCNLIEIPQDIGCLSLLRSLDL 762 (1094)
Q Consensus 689 ~~L~l~~~~i~~~p----~~l~~l~~L~~L~l~~~~~~~lp--~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 762 (1094)
+.|++++|.++.++ ..+..+++|+.|++++|.....+ ..+..+++|++|+|++|.++.+|..+. ++|+.|+|
T Consensus 204 ~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~L 281 (312)
T 1wwl_A 204 QVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDL 281 (312)
T ss_dssp CEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEEC
T ss_pred CEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEEC
Confidence 88888888777432 22356678888888887765544 345567788888888888887777665 77888888
Q ss_pred CCCCCcccchhhcCCCCCCEEEccCCCCCC
Q 001348 763 RKNNFEYLPASMKHLSKLKSLDLSCCNMLQ 792 (1094)
Q Consensus 763 ~~n~l~~lp~~l~~l~~L~~L~L~~~~~l~ 792 (1094)
++|+++.+|. +..+++|++|+|++|++.+
T Consensus 282 s~N~l~~~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 282 SYNRLDRNPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CSSCCCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCCCCCChh-HhhCCCCCEEeccCCCCCC
Confidence 8888887775 7778888888888887653
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.87 E-value=5.2e-22 Score=220.01 Aligned_cols=245 Identities=22% Similarity=0.257 Sum_probs=198.8
Q ss_pred EEeccCCCCCcccCCcc-CCccEEEeccCCCCccc-cccccccccceeecccccccccchhhhhcCCcccEEeccCCc-c
Q 001348 551 SLNFSYCVNFKEFPQIS-GNVRELYLRGTPIEYVP-SSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCS-K 627 (1094)
Q Consensus 551 ~L~Ls~~~~l~~~p~~~-~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~-~ 627 (1094)
.++.++. .++.+|... .+|++|+|++|.+..+| ..+..+++|++|+|++|.+.+..|..+.++++|++|++++|. .
T Consensus 15 ~~~c~~~-~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l 93 (285)
T 1ozn_A 15 TTSCPQQ-GLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93 (285)
T ss_dssp EEECCSS-CCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred EEEcCcC-CcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCc
Confidence 4444433 355555433 38999999999999887 468999999999999999888778899999999999999998 4
Q ss_pred cCccchhhcccCccceeeccCcccccc-cchhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccCCc-cc
Q 001348 628 LESFPEILEKMGCLEDIDLEGTAITEL-PSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQLPS-SI 705 (1094)
Q Consensus 628 ~~~~p~~l~~l~~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p~-~l 705 (1094)
....|..+.++++|++|++++|.++.+ |..+..+++|++|++++|.+....+..++.+++|+.|++++|.++.+|. .+
T Consensus 94 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 173 (285)
T 1ozn_A 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF 173 (285)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred cccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHh
Confidence 444478899999999999999999977 5568999999999999998877667779999999999999999998876 48
Q ss_pred cCCCCCcEEEccCCCCCCC-CCCCCCCCCCCEEeCCCCCCCCCCcc-ccCCCCCCeeecCCCCCcccchhhcCCCCCCEE
Q 001348 706 TNLNELQVVWCSGCRGLIL-PPSFSGLSYLTELDLSCCNLIEIPQD-IGCLSLLRSLDLRKNNFEYLPASMKHLSKLKSL 783 (1094)
Q Consensus 706 ~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L 783 (1094)
..+++|+.|++++|....+ |..+..+++|+.|+|++|.++.+|.. +..+++|+.|+|++|.+..-.........|+.+
T Consensus 174 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~ 253 (285)
T 1ozn_A 174 RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKF 253 (285)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHC
T ss_pred cCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhc
Confidence 8999999999999997665 77899999999999999999998754 889999999999999887322111111223334
Q ss_pred EccCCCCCCCCCc
Q 001348 784 DLSCCNMLQSLPE 796 (1094)
Q Consensus 784 ~L~~~~~l~~lp~ 796 (1094)
....+......|.
T Consensus 254 ~~~~~~~~c~~p~ 266 (285)
T 1ozn_A 254 RGSSSEVPCSLPQ 266 (285)
T ss_dssp CSEECCCBEEESG
T ss_pred ccccCccccCCch
Confidence 4555555555554
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.87 E-value=6e-23 Score=231.18 Aligned_cols=232 Identities=18% Similarity=0.185 Sum_probs=194.8
Q ss_pred CccEEEeccCCCCccc-cccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeecc
Q 001348 569 NVRELYLRGTPIEYVP-SSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLE 647 (1094)
Q Consensus 569 ~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~ 647 (1094)
+|++|+|++|.+..++ ..+..+++|++|+|++|.+.+..| +..+++|++|++++|.+.+ +| ..++|++|+++
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-l~----~~~~L~~L~l~ 107 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VGPSIETLHAA 107 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-EE----ECTTCCEEECC
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-cc----CCCCcCEEECC
Confidence 7888899998888775 578899999999999998876555 8889999999999987543 22 44889999999
Q ss_pred CcccccccchhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccC-Cccc-cCCCCCcEEEccCCCCCCCC
Q 001348 648 GTAITELPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQL-PSSI-TNLNELQVVWCSGCRGLILP 725 (1094)
Q Consensus 648 ~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~-p~~l-~~l~~L~~L~l~~~~~~~lp 725 (1094)
+|.++.++.. .+++|++|++++|.+.+..+..++.+++|+.|++++|.++.+ +..+ ..+++|+.|++++|....++
T Consensus 108 ~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 185 (317)
T 3o53_A 108 NNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185 (317)
T ss_dssp SSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred CCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc
Confidence 9999987754 478899999999988877777888999999999999999876 4444 47899999999999987776
Q ss_pred CCCCCCCCCCEEeCCCCCCCCCCccccCCCCCCeeecCCCCCcccchhhcCCCCCCEEEccCCCCC-CCCCccccccccc
Q 001348 726 PSFSGLSYLTELDLSCCNLIEIPQDIGCLSLLRSLDLRKNNFEYLPASMKHLSKLKSLDLSCCNML-QSLPELPLQLKFL 804 (1094)
Q Consensus 726 ~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~~~~l-~~lp~~~~~L~~L 804 (1094)
. ...+++|++|+|++|.++.+|..+..+++|+.|+|++|+++.+|..+..+++|+.|+|++|++. +.+|..+..+..|
T Consensus 186 ~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L 264 (317)
T 3o53_A 186 G-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264 (317)
T ss_dssp C-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHH
T ss_pred c-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccc
Confidence 5 3458999999999999999998899999999999999999999999999999999999999988 6666665555555
Q ss_pred cccccc
Q 001348 805 QAKDCK 810 (1094)
Q Consensus 805 ~~~~c~ 810 (1094)
...++.
T Consensus 265 ~~l~l~ 270 (317)
T 3o53_A 265 QTVAKQ 270 (317)
T ss_dssp HHHHHH
T ss_pred eEEECC
Confidence 544444
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.87 E-value=3.8e-21 Score=227.02 Aligned_cols=239 Identities=21% Similarity=0.228 Sum_probs=208.0
Q ss_pred CccEEEeccCCCCccccccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccC
Q 001348 569 NVRELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEG 648 (1094)
Q Consensus 569 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~ 648 (1094)
..+.++.++.+++.+|..+. ++++.|+|++|.+....+..|.++++|++|+|++|.+....+..+.++++|++|+|++
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 45688889999999998876 7899999999999888888999999999999999998887888999999999999999
Q ss_pred cccccccc-hhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCC-ccCccCCc-cccCCCCCcEEEccCCCCCCCC
Q 001348 649 TAITELPS-SIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANE-SAISQLPS-SITNLNELQVVWCSGCRGLILP 725 (1094)
Q Consensus 649 ~~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~-~~i~~~p~-~l~~l~~L~~L~l~~~~~~~lp 725 (1094)
|.++.+|. .+..+++|++|+|++|.+....+..+.++++|+.|++++ +.+..++. .+.++++|+.|++++|....+|
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 201 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP 201 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc
Confidence 99999987 589999999999999987766667899999999999998 46666654 6889999999999999988887
Q ss_pred CCCCCCCCCCEEeCCCCCCCCC-CccccCCCCCCeeecCCCCCcccc-hhhcCCCCCCEEEccCCCCCCCCCcccccccc
Q 001348 726 PSFSGLSYLTELDLSCCNLIEI-PQDIGCLSLLRSLDLRKNNFEYLP-ASMKHLSKLKSLDLSCCNMLQSLPELPLQLKF 803 (1094)
Q Consensus 726 ~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~~~~l~~lp~~~~~L~~ 803 (1094)
. +..+++|+.|+|++|.++.+ |..+..+++|+.|+|++|+++.++ ..+..+++|+.|+|++|++....+..+..+..
T Consensus 202 ~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 280 (440)
T 3zyj_A 202 N-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHH 280 (440)
T ss_dssp C-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTT
T ss_pred c-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccC
Confidence 5 88999999999999999986 667899999999999999999775 56889999999999999887666666555554
Q ss_pred ccccccc
Q 001348 804 LQAKDCK 810 (1094)
Q Consensus 804 L~~~~c~ 810 (1094)
|...++.
T Consensus 281 L~~L~L~ 287 (440)
T 3zyj_A 281 LERIHLH 287 (440)
T ss_dssp CCEEECC
T ss_pred CCEEEcC
Confidence 4444433
No 66
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.87 E-value=3.8e-21 Score=227.82 Aligned_cols=239 Identities=21% Similarity=0.233 Sum_probs=207.0
Q ss_pred CccEEEeccCCCCccccccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccC
Q 001348 569 NVRELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEG 648 (1094)
Q Consensus 569 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~ 648 (1094)
....++.++.+++.+|..+. ++|++|+|++|.+.+..|..|.++++|++|+|++|.+.+..|..+.++++|++|+|++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 45678889999999998775 6899999999999888889999999999999999998888889999999999999999
Q ss_pred cccccccch-hhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCC-ccCccCCc-cccCCCCCcEEEccCCCCCCCC
Q 001348 649 TAITELPSS-IEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANE-SAISQLPS-SITNLNELQVVWCSGCRGLILP 725 (1094)
Q Consensus 649 ~~i~~lp~~-l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~-~~i~~~p~-~l~~l~~L~~L~l~~~~~~~lp 725 (1094)
|.++.+|.. +..+++|++|+|++|.+....+..+.++++|+.|++++ +.+..++. .+..+++|+.|++++|....+|
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 212 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP 212 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc
Confidence 999988875 88899999999999987766666899999999999998 56677755 5889999999999999988886
Q ss_pred CCCCCCCCCCEEeCCCCCCCCC-CccccCCCCCCeeecCCCCCccc-chhhcCCCCCCEEEccCCCCCCCCCcccccccc
Q 001348 726 PSFSGLSYLTELDLSCCNLIEI-PQDIGCLSLLRSLDLRKNNFEYL-PASMKHLSKLKSLDLSCCNMLQSLPELPLQLKF 803 (1094)
Q Consensus 726 ~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~L~~ 803 (1094)
. +..+++|+.|+|++|.++.+ |..+..+++|+.|+|++|+++.+ |..+..+++|+.|+|++|++....+..+..+..
T Consensus 213 ~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 291 (452)
T 3zyi_A 213 N-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRY 291 (452)
T ss_dssp C-CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTT
T ss_pred c-ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccC
Confidence 4 88999999999999999986 66799999999999999999976 557889999999999999887655555555544
Q ss_pred ccccccc
Q 001348 804 LQAKDCK 810 (1094)
Q Consensus 804 L~~~~c~ 810 (1094)
|...+..
T Consensus 292 L~~L~L~ 298 (452)
T 3zyi_A 292 LVELHLH 298 (452)
T ss_dssp CCEEECC
T ss_pred CCEEEcc
Confidence 4444433
No 67
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.87 E-value=4.8e-22 Score=227.51 Aligned_cols=261 Identities=18% Similarity=0.207 Sum_probs=151.3
Q ss_pred EEecCCCCCCCCCCCCccccceeeccccccccccc-cCCCCCcCcccCCCCCCCCCeEEeccCCCCCccc-CCcc---CC
Q 001348 495 LHWHGYPLKMLPSNFTPENLIELNLLYSRIEQLWK-GKKGCKSLRCFPNNIHFRSPISLNFSYCVNFKEF-PQIS---GN 569 (1094)
Q Consensus 495 L~l~~~~l~~lp~~~~~~~L~~L~L~~n~i~~l~~-~~~~l~~L~~~~~~~~~~~l~~L~Ls~~~~l~~~-p~~~---~~ 569 (1094)
.+.+++.++.+|..+. .+|++|++++|+++.++. .+..+++|+ .|++++|. +..+ |..+ .+
T Consensus 36 c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~------------~L~L~~n~-l~~~~~~~~~~l~~ 101 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLT-EAVKSLDLSNNRITYISNSDLQRCVNLQ------------ALVLTSNG-INTIEEDSFSSLGS 101 (353)
T ss_dssp EECCSTTCSSCCTTCC-TTCCEEECTTSCCCEECTTTTTTCTTCC------------EEECTTSC-CCEECTTTTTTCTT
T ss_pred eeCCCCCccccccccc-ccCcEEECCCCcCcccCHHHhccCCCCC------------EEECCCCc-cCccCHhhcCCCCC
Confidence 4444555555554332 345555555555554433 344444444 55555553 2222 2212 15
Q ss_pred ccEEEeccCCCCccccc-cccccccceeecccccccccchh--hhhcCCcccEEeccCCcccCc-cchhhcccCccceee
Q 001348 570 VRELYLRGTPIEYVPSS-IDCLAKLEYLDLGHCTILESIST--SICKLKSLLKLCLDNCSKLES-FPEILEKMGCLEDID 645 (1094)
Q Consensus 570 L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~--~i~~l~~L~~L~L~~~~~~~~-~p~~l~~l~~L~~L~ 645 (1094)
|++|+|++|.++.+|.. ++.+++|++|++++|.+.. +|. .+.++++|++|++++|...+. .|..+.++++|++|+
T Consensus 102 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 180 (353)
T 2z80_A 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE 180 (353)
T ss_dssp CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEE
Confidence 66666666666666544 5566666666666665543 332 455566666666666543333 344566666666666
Q ss_pred ccCcccccc-cchhhccCCCcEEecCCCCCCCCCCcc-ccCCCcccEEecCCccCccCCc----cccCCCCCcEEEccCC
Q 001348 646 LEGTAITEL-PSSIEYLGGLTTLNLTGCSKLDNLPEN-LGNLKSLKMLCANESAISQLPS----SITNLNELQVVWCSGC 719 (1094)
Q Consensus 646 L~~~~i~~l-p~~l~~l~~L~~L~L~~~~~~~~lp~~-l~~l~~L~~L~l~~~~i~~~p~----~l~~l~~L~~L~l~~~ 719 (1094)
+++|.++.+ |..+..+++|++|++++|.+ ..+|.. +..+++|+.|++++|.++.++. .......++.+++.++
T Consensus 181 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~ 259 (353)
T 2z80_A 181 IDASDLQSYEPKSLKSIQNVSHLILHMKQH-ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV 259 (353)
T ss_dssp EEETTCCEECTTTTTTCSEEEEEEEECSCS-TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESC
T ss_pred CCCCCcCccCHHHHhccccCCeecCCCCcc-ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccc
Confidence 666666644 45566666666666666554 333332 3345666666666666654421 1233456667777666
Q ss_pred CCC-----CCCCCCCCCCCCCEEeCCCCCCCCCCccc-cCCCCCCeeecCCCCCcccc
Q 001348 720 RGL-----ILPPSFSGLSYLTELDLSCCNLIEIPQDI-GCLSLLRSLDLRKNNFEYLP 771 (1094)
Q Consensus 720 ~~~-----~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l-~~l~~L~~L~L~~n~l~~lp 771 (1094)
... .+|..+..+++|+.|+|++|+++.+|..+ +.+++|+.|+|++|.+..-+
T Consensus 260 ~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 260 KITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp BCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred cccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 532 35666778889999999999999988874 88999999999999887443
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=4.6e-22 Score=237.21 Aligned_cols=231 Identities=18% Similarity=0.178 Sum_probs=195.9
Q ss_pred CccEEEeccCCCCccc-cccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeecc
Q 001348 569 NVRELYLRGTPIEYVP-SSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLE 647 (1094)
Q Consensus 569 ~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~ 647 (1094)
+|++|+|++|.+..++ ..++.+++|++|+|++|.+.+..| ++.+++|++|+|++|.+.+. | ..++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E----ECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C----CCCCcCEEECc
Confidence 7889999999998774 678999999999999999877665 88899999999999876543 2 33889999999
Q ss_pred CcccccccchhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccC-Ccccc-CCCCCcEEEccCCCCCCCC
Q 001348 648 GTAITELPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQL-PSSIT-NLNELQVVWCSGCRGLILP 725 (1094)
Q Consensus 648 ~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~-p~~l~-~l~~L~~L~l~~~~~~~lp 725 (1094)
+|.++.++.. .+++|+.|+|++|.+.+..|..++.+++|+.|++++|.++.+ |..+. .+++|+.|++++|....+|
T Consensus 108 ~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~ 185 (487)
T 3oja_A 108 NNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185 (487)
T ss_dssp SSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred CCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc
Confidence 9999987764 578999999999998888888899999999999999999864 55665 7899999999999987776
Q ss_pred CCCCCCCCCCEEeCCCCCCCCCCccccCCCCCCeeecCCCCCcccchhhcCCCCCCEEEccCCCCC-CCCCccccccccc
Q 001348 726 PSFSGLSYLTELDLSCCNLIEIPQDIGCLSLLRSLDLRKNNFEYLPASMKHLSKLKSLDLSCCNML-QSLPELPLQLKFL 804 (1094)
Q Consensus 726 ~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~~~~l-~~lp~~~~~L~~L 804 (1094)
. ...+++|+.|+|++|.++.+|..+..+++|+.|+|++|.++.+|..+..+++|+.|+|++|++. +.+|..+..+..|
T Consensus 186 ~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L 264 (487)
T 3oja_A 186 G-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264 (487)
T ss_dssp C-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHH
T ss_pred c-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCC
Confidence 5 4469999999999999999988899999999999999999999999999999999999999987 5666655555555
Q ss_pred ccccc
Q 001348 805 QAKDC 809 (1094)
Q Consensus 805 ~~~~c 809 (1094)
...++
T Consensus 265 ~~l~~ 269 (487)
T 3oja_A 265 QTVAK 269 (487)
T ss_dssp HHHHH
T ss_pred cEEec
Confidence 54444
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.85 E-value=3.9e-22 Score=224.04 Aligned_cols=238 Identities=21% Similarity=0.189 Sum_probs=200.6
Q ss_pred CccEEEeccCCCCccccccccccccceeecccccc-cccchhhhh-------cCCcccEEeccCCcccCccchhh--ccc
Q 001348 569 NVRELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTI-LESISTSIC-------KLKSLLKLCLDNCSKLESFPEIL--EKM 638 (1094)
Q Consensus 569 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~-~~~lp~~i~-------~l~~L~~L~L~~~~~~~~~p~~l--~~l 638 (1094)
+|++|++++|.+ .+|..+... |+.|+|++|.+ ...+|..+. ++++|++|++++|.+.+.+|..+ ..+
T Consensus 44 ~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 120 (312)
T 1wwl_A 44 SLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG 120 (312)
T ss_dssp ECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCS
T ss_pred CceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcC
Confidence 789999999999 888877655 99999999988 345676665 79999999999999998899876 899
Q ss_pred CccceeeccCcccccccchhhcc-----CCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCcc---CCccc--cCC
Q 001348 639 GCLEDIDLEGTAITELPSSIEYL-----GGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQ---LPSSI--TNL 708 (1094)
Q Consensus 639 ~~L~~L~L~~~~i~~lp~~l~~l-----~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~---~p~~l--~~l 708 (1094)
++|++|++++|.++.+|..++.+ ++|++|++++|.+.+..|..++++++|++|++++|.+.. +|..+ ..+
T Consensus 121 ~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l 200 (312)
T 1wwl_A 121 PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF 200 (312)
T ss_dssp CCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSC
T ss_pred CCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccC
Confidence 99999999999999889888888 999999999999988888999999999999999998753 34455 889
Q ss_pred CCCcEEEccCCCCCCCCC----CCCCCCCCCEEeCCCCCCCCCC--ccccCCCCCCeeecCCCCCcccchhhcCCCCCCE
Q 001348 709 NELQVVWCSGCRGLILPP----SFSGLSYLTELDLSCCNLIEIP--QDIGCLSLLRSLDLRKNNFEYLPASMKHLSKLKS 782 (1094)
Q Consensus 709 ~~L~~L~l~~~~~~~lp~----~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~ 782 (1094)
++|+.|++++|....++. .+.++++|+.|+|++|.++..+ ..+..+++|+.|+|++|+++.+|..+. ++|+.
T Consensus 201 ~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~ 278 (312)
T 1wwl_A 201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSV 278 (312)
T ss_dssp TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEE
T ss_pred CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceE
Confidence 999999999998764332 2457899999999999999854 346678999999999999999998776 89999
Q ss_pred EEccCCCCCCCCCcccccccccccccccccc
Q 001348 783 LDLSCCNMLQSLPELPLQLKFLQAKDCKQLQ 813 (1094)
Q Consensus 783 L~L~~~~~l~~lp~~~~~L~~L~~~~c~~l~ 813 (1094)
|+|++|++.+. |. +..+..|...+...+.
T Consensus 279 L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 279 LDLSYNRLDRN-PS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp EECCSSCCCSC-CC-TTTSCEEEEEECTTCT
T ss_pred EECCCCCCCCC-hh-HhhCCCCCEEeccCCC
Confidence 99999987665 65 5556555555554443
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.85 E-value=2.2e-22 Score=226.65 Aligned_cols=213 Identities=18% Similarity=0.134 Sum_probs=175.3
Q ss_pred CccEEEeccCCCCccccccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccC
Q 001348 569 NVRELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEG 648 (1094)
Q Consensus 569 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~ 648 (1094)
+|++|+|++|.+..+++ +..+++|++|++++|.+.+ +| ..++|++|++++|.+.+..+. .+++|++|++++
T Consensus 59 ~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~-l~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~ 129 (317)
T 3o53_A 59 KLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE-LL----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLAN 129 (317)
T ss_dssp TCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEE-EE----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCS
T ss_pred cCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccc-cc----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCC
Confidence 67777777777776654 7888888888888887654 22 358888888888877665443 357788999999
Q ss_pred cccccccc-hhhccCCCcEEecCCCCCCCCCCccc-cCCCcccEEecCCccCccCCccccCCCCCcEEEccCCCCCCCCC
Q 001348 649 TAITELPS-SIEYLGGLTTLNLTGCSKLDNLPENL-GNLKSLKMLCANESAISQLPSSITNLNELQVVWCSGCRGLILPP 726 (1094)
Q Consensus 649 ~~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l-~~l~~L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~~~~lp~ 726 (1094)
|.++.++. .++.+++|++|++++|.+.+..+..+ ..+++|+.|++++|.++.++. ...+++|+.|++++|....+|+
T Consensus 130 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~l~~ 208 (317)
T 3o53_A 130 NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGP 208 (317)
T ss_dssp SCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECG
T ss_pred CCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc-ccccccCCEEECCCCcCCcchh
Confidence 98887754 67888899999999888777666665 478899999999999888754 3458999999999999888888
Q ss_pred CCCCCCCCCEEeCCCCCCCCCCccccCCCCCCeeecCCCCCc--ccchhhcCCCCCCEEEccCCCCC
Q 001348 727 SFSGLSYLTELDLSCCNLIEIPQDIGCLSLLRSLDLRKNNFE--YLPASMKHLSKLKSLDLSCCNML 791 (1094)
Q Consensus 727 ~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~~~~l 791 (1094)
.+..+++|+.|+|++|.++.+|..+..+++|+.|+|++|.+. .+|.++..+++|+.|++++|+.+
T Consensus 209 ~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l 275 (317)
T 3o53_A 209 EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275 (317)
T ss_dssp GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhc
Confidence 899999999999999999999999999999999999999998 78888999999999999866543
No 71
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.84 E-value=6.1e-23 Score=244.11 Aligned_cols=334 Identities=19% Similarity=0.187 Sum_probs=229.7
Q ss_pred CCCceEEEEeCCCCCCccccccccccCCccccCcccccEEEecCCCCC-----CCCCCC-Cccccceeeccccccccc--
Q 001348 456 MPNLRFLKFYMPKLFGISDMVCKLHLPQGLQYLSDELRYLHWHGYPLK-----MLPSNF-TPENLIELNLLYSRIEQL-- 527 (1094)
Q Consensus 456 l~~Lr~L~l~~n~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~-----~lp~~~-~~~~L~~L~L~~n~i~~l-- 527 (1094)
.++|+.|++++|.++. .....-+..+ ++|+.|++++|.++ .++..+ .+++|++|++++|.+...
T Consensus 2 ~~~l~~L~Ls~~~l~~-------~~~~~~~~~~-~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 73 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSD-------ARWAELLPLL-QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGV 73 (461)
T ss_dssp CEEEEEEEEESCCCCH-------HHHHHHHHHH-TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHH
T ss_pred CccceehhhhhcccCc-------hhHHHHHhhc-CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHH
Confidence 3578999999988753 1111113333 47999999999987 334433 468899999999988752
Q ss_pred ---cccCCCCC-cCcccCCCCCCCCCeEEeccCCCCCc----ccCCcc---CCccEEEeccCCCCcc-cccc-----ccc
Q 001348 528 ---WKGKKGCK-SLRCFPNNIHFRSPISLNFSYCVNFK----EFPQIS---GNVRELYLRGTPIEYV-PSSI-----DCL 590 (1094)
Q Consensus 528 ---~~~~~~l~-~L~~~~~~~~~~~l~~L~Ls~~~~l~----~~p~~~---~~L~~L~L~~~~l~~l-p~~i-----~~L 590 (1094)
...+.... +|+ .|++++|..-. .++..+ .+|++|+|++|.+... +..+ ..+
T Consensus 74 ~~l~~~l~~~~~~L~------------~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~ 141 (461)
T 1z7x_W 74 HCVLQGLQTPSCKIQ------------KLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQ 141 (461)
T ss_dssp HHHHHTTCSTTCCCC------------EEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHhhCCCcee------------EEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCC
Confidence 11222111 465 99999886331 234332 2899999999887643 2222 235
Q ss_pred cccceeeccccccccc----chhhhhcCCcccEEeccCCcccCccchhhc-----ccCccceeeccCccccc-----ccc
Q 001348 591 AKLEYLDLGHCTILES----ISTSICKLKSLLKLCLDNCSKLESFPEILE-----KMGCLEDIDLEGTAITE-----LPS 656 (1094)
Q Consensus 591 ~~L~~L~L~~~~~~~~----lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~-----~l~~L~~L~L~~~~i~~-----lp~ 656 (1094)
++|++|+|++|.+... ++..+..+++|++|++++|.+....+..+. .+++|++|++++|.++. ++.
T Consensus 142 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 221 (461)
T 1z7x_W 142 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG 221 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHH
T ss_pred CcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHH
Confidence 6799999999987663 466677789999999999886554444333 35689999999998885 677
Q ss_pred hhhccCCCcEEecCCCCCCCCC-----CccccCCCcccEEecCCccCcc-----CCccccCCCCCcEEEccCCCCCC---
Q 001348 657 SIEYLGGLTTLNLTGCSKLDNL-----PENLGNLKSLKMLCANESAISQ-----LPSSITNLNELQVVWCSGCRGLI--- 723 (1094)
Q Consensus 657 ~l~~l~~L~~L~L~~~~~~~~l-----p~~l~~l~~L~~L~l~~~~i~~-----~p~~l~~l~~L~~L~l~~~~~~~--- 723 (1094)
.+..+++|++|++++|.+.... +..+..+++|+.|++++|.++. ++..+..+++|+.|++++|....
T Consensus 222 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 301 (461)
T 1z7x_W 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH
T ss_pred HHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH
Confidence 7888899999999998654321 2223467899999999998886 67778888999999999887431
Q ss_pred --CCCCC-CCCCCCCEEeCCCCCCCC-----CCccccCCCCCCeeecCCCCCccc-ch----hhcC-CCCCCEEEccCCC
Q 001348 724 --LPPSF-SGLSYLTELDLSCCNLIE-----IPQDIGCLSLLRSLDLRKNNFEYL-PA----SMKH-LSKLKSLDLSCCN 789 (1094)
Q Consensus 724 --lp~~l-~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~L~~n~l~~l-p~----~l~~-l~~L~~L~L~~~~ 789 (1094)
+...+ ...++|+.|+|++|.++. ++..+..+++|+.|+|++|.++.. +. .+.. .++|++|+|++|.
T Consensus 302 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 11111 234689999999998875 456677788999999999988743 22 2322 6789999999998
Q ss_pred CCC----CCCccc---ccccccccccc
Q 001348 790 MLQ----SLPELP---LQLKFLQAKDC 809 (1094)
Q Consensus 790 ~l~----~lp~~~---~~L~~L~~~~c 809 (1094)
+.. .+|..+ ++|+.|++.++
T Consensus 382 i~~~~~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 382 VSDSSCSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp CCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred CChhhHHHHHHHHHhCCCccEEECCCC
Confidence 764 666554 34555544443
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.84 E-value=2.1e-20 Score=205.93 Aligned_cols=213 Identities=23% Similarity=0.241 Sum_probs=125.1
Q ss_pred CcccCCccC-CccEEEeccCCCCcccc-ccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcc
Q 001348 560 FKEFPQISG-NVRELYLRGTPIEYVPS-SIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEK 637 (1094)
Q Consensus 560 l~~~p~~~~-~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~ 637 (1094)
+..+|.... +|++|+|++|.++.++. .+..+++|++|+|++|.+.+..+..+.++++|++|++++|.+.+..+..+.+
T Consensus 19 l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (276)
T 2z62_A 19 FYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (276)
T ss_dssp CSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred ccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcC
Confidence 444444333 56666666665555543 4555555666666555554444444555555555555555544444445555
Q ss_pred cCccceeeccCcccccccchhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCcc--CCccccCCCCCcEEE
Q 001348 638 MGCLEDIDLEGTAITELPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQ--LPSSITNLNELQVVW 715 (1094)
Q Consensus 638 l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~--~p~~l~~l~~L~~L~ 715 (1094)
+++|++|++++|.++.++. ..++++++|+.|++++|.++. +|..+..+++|+.|+
T Consensus 99 l~~L~~L~l~~n~l~~~~~-----------------------~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~ 155 (276)
T 2z62_A 99 LSSLQKLVAVETNLASLEN-----------------------FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155 (276)
T ss_dssp CTTCCEEECTTSCCCCSTT-----------------------CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred CccccEEECCCCCccccCc-----------------------hhcccCCCCCEEECcCCccceecCchhhccCCCCCEEE
Confidence 5555555555555554433 334444444444444444443 344455555555555
Q ss_pred ccCCCCCCCC-CCCCCCCCCC----EEeCCCCCCCCCCccccCCCCCCeeecCCCCCcccchh-hcCCCCCCEEEccCCC
Q 001348 716 CSGCRGLILP-PSFSGLSYLT----ELDLSCCNLIEIPQDIGCLSLLRSLDLRKNNFEYLPAS-MKHLSKLKSLDLSCCN 789 (1094)
Q Consensus 716 l~~~~~~~lp-~~l~~l~~L~----~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~~~ 789 (1094)
+++|....++ ..+..+.+|+ .|++++|.++.++.......+|+.|+|++|+++.+|.. +..+++|+.|+|++|+
T Consensus 156 Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred CCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 5555443332 2333344444 78888888888777666666899999999999888765 4788999999999998
Q ss_pred CCCCCC
Q 001348 790 MLQSLP 795 (1094)
Q Consensus 790 ~l~~lp 795 (1094)
+....|
T Consensus 236 ~~c~c~ 241 (276)
T 2z62_A 236 WDCSCP 241 (276)
T ss_dssp BCCCTT
T ss_pred ccccCC
Confidence 765443
No 73
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=99.83 E-value=4e-21 Score=189.96 Aligned_cols=82 Identities=41% Similarity=0.656 Sum_probs=75.2
Q ss_pred CCCCEEEeEeecCCccccccccCcHHHHHHHHHHhhccChHHHHHHHHHHHHHhhccCCCCCCCchhHHHHHHHHHHHHh
Q 001348 1 MNGQKVLPVFYHVDPSDVRKQTGRVGDAFVVHEKQFREMPEKVQKWRAVLTEASNLSGWDSKKIRPEAKLVDEIVKDILK 80 (1094)
Q Consensus 1 ~~~~~v~pvfy~vdps~vr~q~g~~~~~~~~~~~~~~~~~~~~~~w~~al~~~a~~~g~~~~~~~~e~~~i~~i~~~v~~ 80 (1094)
+.|++||||||+|||||||+|+|+||+||++|+++ +.++++++||+||++||+++||++. ++|+++|++||++|++
T Consensus 93 ~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~--~~e~~~i~~Iv~~v~~ 168 (176)
T 3jrn_A 93 KGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG--DDDSKLVDKIANEISN 168 (176)
T ss_dssp TTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC--SCHHHHHHHHHHHHHT
T ss_pred cCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC--CCHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999998 6789999999999999999999994 6899999999999999
Q ss_pred cccccc
Q 001348 81 KLNYFS 86 (1094)
Q Consensus 81 ~l~~~~ 86 (1094)
+|+.++
T Consensus 169 ~l~~~~ 174 (176)
T 3jrn_A 169 KKTIYA 174 (176)
T ss_dssp TCC---
T ss_pred HhcCCC
Confidence 998876
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=7.4e-21 Score=226.72 Aligned_cols=208 Identities=18% Similarity=0.129 Sum_probs=167.0
Q ss_pred CccEEEeccCCCCccccccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccC
Q 001348 569 NVRELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEG 648 (1094)
Q Consensus 569 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~ 648 (1094)
+|++|+|++|.+..+++ ++.+++|++|+|++|.+.+ +| ..++|++|++++|.+.+..+. .+++|++|++++
T Consensus 59 ~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~----~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~ 129 (487)
T 3oja_A 59 KLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE-LL----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLAN 129 (487)
T ss_dssp TCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEE-EE----ECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCS
T ss_pred CCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCC-CC----CCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCC
Confidence 56677777777766554 7788888888888887654 23 247888888888877665543 357788888888
Q ss_pred cccccc-cchhhccCCCcEEecCCCCCCCCCCcccc-CCCcccEEecCCccCccCCccccCCCCCcEEEccCCCCCCCCC
Q 001348 649 TAITEL-PSSIEYLGGLTTLNLTGCSKLDNLPENLG-NLKSLKMLCANESAISQLPSSITNLNELQVVWCSGCRGLILPP 726 (1094)
Q Consensus 649 ~~i~~l-p~~l~~l~~L~~L~L~~~~~~~~lp~~l~-~l~~L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~~~~lp~ 726 (1094)
|.++.+ |..++.+++|++|+|++|.+.+..|..+. .+++|+.|++++|.++.+|. ...+++|+.|++++|....+|+
T Consensus 130 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~ 208 (487)
T 3oja_A 130 NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGP 208 (487)
T ss_dssp SCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECG
T ss_pred CCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEEECCCCCCCCCCH
Confidence 888866 45678888888888888888777777765 78888888888888887744 4468899999999998888888
Q ss_pred CCCCCCCCCEEeCCCCCCCCCCccccCCCCCCeeecCCCCCc--ccchhhcCCCCCCEEEcc
Q 001348 727 SFSGLSYLTELDLSCCNLIEIPQDIGCLSLLRSLDLRKNNFE--YLPASMKHLSKLKSLDLS 786 (1094)
Q Consensus 727 ~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~ 786 (1094)
.+..+++|+.|+|++|.++.+|..++.+++|+.|++++|.+. .+|.++..++.|+.|+++
T Consensus 209 ~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 209 EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred hHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 888999999999999999999999999999999999999998 778888888888888886
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.82 E-value=5.6e-20 Score=202.57 Aligned_cols=197 Identities=19% Similarity=0.194 Sum_probs=151.2
Q ss_pred CCeEEeccCCCCCcccCC-cc---CCccEEEeccCCCCcccc-ccccccccceeecccccccccchhhhhcCCcccEEec
Q 001348 548 SPISLNFSYCVNFKEFPQ-IS---GNVRELYLRGTPIEYVPS-SIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCL 622 (1094)
Q Consensus 548 ~l~~L~Ls~~~~l~~~p~-~~---~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L 622 (1094)
+++.|+++++. ++.++. .+ .+|++|+|++|.+..++. .+..+++|++|+|++|.+.+..|..+.++++|++|++
T Consensus 29 ~l~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCC-CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CccEEECCCCc-ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 34499999985 444443 32 289999999999998865 6899999999999999998888888999999999999
Q ss_pred cCCcccCccchhhcccCccceeeccCccccc--ccchhhccCCCcEEecCCCCCCCCCCccccCCCccc----EEecCCc
Q 001348 623 DNCSKLESFPEILEKMGCLEDIDLEGTAITE--LPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLK----MLCANES 696 (1094)
Q Consensus 623 ~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~--lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~----~L~l~~~ 696 (1094)
++|.+.+..+..++++++|++|++++|.++. +|..+..+++|++|++++|.+.+..+..+..+.+|+ .|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 9998887777679999999999999999986 678888888888888888877665555555555554 5556666
Q ss_pred cCccCCccccCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeCCCCCCCCCCcc-ccCCCCCCeeecCCCCCc
Q 001348 697 AISQLPSSITNLNELQVVWCSGCRGLILPPSFSGLSYLTELDLSCCNLIEIPQD-IGCLSLLRSLDLRKNNFE 768 (1094)
Q Consensus 697 ~i~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~l~ 768 (1094)
.++.++. ......+|+.|+|++|.++.+|.. +..+++|+.|+|++|.+.
T Consensus 188 ~l~~~~~-----------------------~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 188 PMNFIQP-----------------------GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CCCEECT-----------------------TSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred cccccCc-----------------------cccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 5555443 333334677777777777766654 466777777777777665
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.82 E-value=1.7e-19 Score=199.94 Aligned_cols=197 Identities=20% Similarity=0.189 Sum_probs=134.4
Q ss_pred CccEEEeccCCCCccccccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccC
Q 001348 569 NVRELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEG 648 (1094)
Q Consensus 569 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~ 648 (1094)
+++.+++++++++.+|..+. ++|+.|+|++|.+.+..|..+.++++|++|+|++|.+.+. +.. +.+++|++|++++
T Consensus 11 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~~L~Ls~ 86 (290)
T 1p9a_G 11 SHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLGTLDLSH 86 (290)
T ss_dssp TCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCCEEECCS
T ss_pred CccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCCEEECCC
Confidence 56777777777777776664 5777777777777666666777777777777777665432 322 5666677777777
Q ss_pred cccccccchhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccCCccccCCCCCcEEEccCCCCCCCCCCC
Q 001348 649 TAITELPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQLPSSITNLNELQVVWCSGCRGLILPPSF 728 (1094)
Q Consensus 649 ~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l 728 (1094)
|.++.+|..+..+++|++|++++|.+.+..|..+.++++|+.|++++|.++.+|. ..+
T Consensus 87 N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~----------------------~~~ 144 (290)
T 1p9a_G 87 NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP----------------------GLL 144 (290)
T ss_dssp SCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT----------------------TTT
T ss_pred CcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccCh----------------------hhc
Confidence 7666666666666666666666655544444445555555555555555544432 225
Q ss_pred CCCCCCCEEeCCCCCCCCCCcc-ccCCCCCCeeecCCCCCcccchhhcCCCCCCEEEccCCCCC
Q 001348 729 SGLSYLTELDLSCCNLIEIPQD-IGCLSLLRSLDLRKNNFEYLPASMKHLSKLKSLDLSCCNML 791 (1094)
Q Consensus 729 ~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~~~~l 791 (1094)
..+++|+.|+|++|+++.+|.. +..+++|+.|+|++|+++.+|..+..+++|+.|+|++|++.
T Consensus 145 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 145 TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred ccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 6677888888888888887765 46688888888888888888888888888888888888753
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.81 E-value=5.6e-19 Score=193.85 Aligned_cols=201 Identities=24% Similarity=0.302 Sum_probs=133.8
Q ss_pred CccEEEeccCCCCccccccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccC
Q 001348 569 NVRELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEG 648 (1094)
Q Consensus 569 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~ 648 (1094)
+++.++++++.++.+|..+. ++|+.|+|++|.+....+..+.++++|++|++++|.+....+..+.++++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 46677888888887777654 5677788887776665555677777777777777665544444556677777777777
Q ss_pred cccccccch-hhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccCCccccCCCCCcEEEccCCCCCCCCCC
Q 001348 649 TAITELPSS-IEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQLPSSITNLNELQVVWCSGCRGLILPPS 727 (1094)
Q Consensus 649 ~~i~~lp~~-l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~~~~lp~~ 727 (1094)
|.++.+|.. +..+++|++|++++|.+....+..+..+++|+.|++++|.++.+|.. .
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----------------------~ 152 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG----------------------V 152 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT----------------------T
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHh----------------------H
Confidence 776666543 45566666666666555444444455555555555555554444321 2
Q ss_pred CCCCCCCCEEeCCCCCCCCCCcc-ccCCCCCCeeecCCCCCcccchh-hcCCCCCCEEEccCCCCCCC
Q 001348 728 FSGLSYLTELDLSCCNLIEIPQD-IGCLSLLRSLDLRKNNFEYLPAS-MKHLSKLKSLDLSCCNMLQS 793 (1094)
Q Consensus 728 l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~~~~l~~ 793 (1094)
+..+++|+.|+|++|.++.+|.. +..+++|+.|+|++|+++.+|.. +..+++|+.|+|++|++...
T Consensus 153 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred ccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 56677777777777777776654 67778888888888888877753 67788888888888876544
No 78
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=99.81 E-value=1.2e-20 Score=189.29 Aligned_cols=81 Identities=35% Similarity=0.667 Sum_probs=76.4
Q ss_pred CCCEEEeEeecCCccccccccCcHHHHHHHHHHhhccChHHHHHHHHHHHHHhhccCCCCCCCchhHHHHHHHHHHHHhc
Q 001348 2 NGQKVLPVFYHVDPSDVRKQTGRVGDAFVVHEKQFREMPEKVQKWRAVLTEASNLSGWDSKKIRPEAKLVDEIVKDILKK 81 (1094)
Q Consensus 2 ~~~~v~pvfy~vdps~vr~q~g~~~~~~~~~~~~~~~~~~~~~~w~~al~~~a~~~g~~~~~~~~e~~~i~~i~~~v~~~ 81 (1094)
.|++||||||+|||||||+|+|+||+||++|++++ ..+++++||+||++||+++||++.++..|+++|++|+++|+++
T Consensus 122 ~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~--~~~~v~~Wr~AL~~va~lsG~~~~~~~~e~~~i~~Iv~di~~k 199 (204)
T 3ozi_A 122 PRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKF--DGQTIQNWKDALKKVGDLKGWHIGKNDKQGAIADKVSADIWSH 199 (204)
T ss_dssp TTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTS--CHHHHHHHHHHHHHHHTSCBEEECTTSCHHHHHHHHHHHHHHH
T ss_pred CCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhh--CHHHHHHHHHHHHHHhccCceecCCCCCHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999986 4689999999999999999999999899999999999999999
Q ss_pred ccc
Q 001348 82 LNY 84 (1094)
Q Consensus 82 l~~ 84 (1094)
|+.
T Consensus 200 l~~ 202 (204)
T 3ozi_A 200 ISK 202 (204)
T ss_dssp HHH
T ss_pred hcc
Confidence 853
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.80 E-value=2e-19 Score=193.62 Aligned_cols=205 Identities=17% Similarity=0.160 Sum_probs=136.6
Q ss_pred CCcccCCccCCccEEEeccCCCCcccc-ccccccccceeeccccc-ccccchhhhhcCCcccEEeccC-CcccCccchhh
Q 001348 559 NFKEFPQISGNVRELYLRGTPIEYVPS-SIDCLAKLEYLDLGHCT-ILESISTSICKLKSLLKLCLDN-CSKLESFPEIL 635 (1094)
Q Consensus 559 ~l~~~p~~~~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~-~~~~lp~~i~~l~~L~~L~L~~-~~~~~~~p~~l 635 (1094)
.++.+|....+|++|+|++|.++.+|. .+..+++|++|++++|. +....+..+.++++|++|++++ |.+....+..+
T Consensus 22 ~l~~ip~~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 22 DIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp SCSSCCCCCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred CccccCCCCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 366666633378888888888888766 57778888888888886 4444444677778888888877 55444444567
Q ss_pred cccCccceeeccCcccccccchhhccCCCc---EEecCCC-CCCCCCCccccCCCccc-EEecCCccCccCCccccCCCC
Q 001348 636 EKMGCLEDIDLEGTAITELPSSIEYLGGLT---TLNLTGC-SKLDNLPENLGNLKSLK-MLCANESAISQLPSSITNLNE 710 (1094)
Q Consensus 636 ~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~---~L~L~~~-~~~~~lp~~l~~l~~L~-~L~l~~~~i~~~p~~l~~l~~ 710 (1094)
.++++|++|++++|.++.+|. +..+++|+ +|++++| .+....+..+.++++|+ .|++++|.++.+
T Consensus 102 ~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i--------- 171 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV--------- 171 (239)
T ss_dssp ECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEE---------
T ss_pred CCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCccc---------
Confidence 777777777777777777765 55555555 6666665 33222223345555555 555555555444
Q ss_pred CcEEEccCCCCCCCCCCCCCCCCCCEEeCCCC-CCCCCCc-cccCC-CCCCeeecCCCCCcccchhhcCCCCCCEEEccC
Q 001348 711 LQVVWCSGCRGLILPPSFSGLSYLTELDLSCC-NLIEIPQ-DIGCL-SLLRSLDLRKNNFEYLPASMKHLSKLKSLDLSC 787 (1094)
Q Consensus 711 L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~n-~l~~lp~-~l~~l-~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~ 787 (1094)
|......++|+.|+|++| .++.+|. .+..+ ++|+.|+|++|+++.+|.. .+++|+.|++++
T Consensus 172 --------------~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~ 235 (239)
T 2xwt_C 172 --------------QGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARN 235 (239)
T ss_dssp --------------CTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTT
T ss_pred --------------CHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccC
Confidence 433333367888888888 4777654 36777 8888888888888888865 678888888887
Q ss_pred CC
Q 001348 788 CN 789 (1094)
Q Consensus 788 ~~ 789 (1094)
|.
T Consensus 236 ~~ 237 (239)
T 2xwt_C 236 TW 237 (239)
T ss_dssp C-
T ss_pred cc
Confidence 75
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.80 E-value=2.2e-19 Score=201.29 Aligned_cols=221 Identities=19% Similarity=0.173 Sum_probs=163.8
Q ss_pred CccEEEeccCCCCc--ccc--ccccccccceeecccccccccchhhh--hcCCcccEEeccCCcccCccc----hhhccc
Q 001348 569 NVRELYLRGTPIEY--VPS--SIDCLAKLEYLDLGHCTILESISTSI--CKLKSLLKLCLDNCSKLESFP----EILEKM 638 (1094)
Q Consensus 569 ~L~~L~L~~~~l~~--lp~--~i~~L~~L~~L~L~~~~~~~~lp~~i--~~l~~L~~L~L~~~~~~~~~p----~~l~~l 638 (1094)
.++.|.+.+..+.. +.. ....+++|++|++++|.+.+..|..+ .++++|++|+|++|.+.+..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 45666666655542 111 12234568888888888777777766 778888888888887776544 334567
Q ss_pred CccceeeccCccccccc-chhhccCCCcEEecCCCCCCCC--C--CccccCCCcccEEecCCccCccCCcc----ccCCC
Q 001348 639 GCLEDIDLEGTAITELP-SSIEYLGGLTTLNLTGCSKLDN--L--PENLGNLKSLKMLCANESAISQLPSS----ITNLN 709 (1094)
Q Consensus 639 ~~L~~L~L~~~~i~~lp-~~l~~l~~L~~L~L~~~~~~~~--l--p~~l~~l~~L~~L~l~~~~i~~~p~~----l~~l~ 709 (1094)
++|++|++++|.++.++ ..++.+++|++|+|++|.+.+. + +..++.+++|++|++++|.++.++.. +..++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~ 224 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV 224 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence 88888888888887665 4677888888888888876542 2 22346778888888888888766542 46778
Q ss_pred CCcEEEccCCCCCCC-CCCCCCC---CCCCEEeCCCCCCCCCCccccCCCCCCeeecCCCCCcccchhhcCCCCCCEEEc
Q 001348 710 ELQVVWCSGCRGLIL-PPSFSGL---SYLTELDLSCCNLIEIPQDIGCLSLLRSLDLRKNNFEYLPASMKHLSKLKSLDL 785 (1094)
Q Consensus 710 ~L~~L~l~~~~~~~l-p~~l~~l---~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L 785 (1094)
+|++|++++|..... |..+..+ ++|++|+|++|+++.+|..+. ++|+.|+|++|+++.+|. +..+++|+.|+|
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L 301 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTL 301 (310)
T ss_dssp CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEEC
T ss_pred CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEEC
Confidence 888888888887665 6666665 699999999999999988774 799999999999998875 678899999999
Q ss_pred cCCCCCC
Q 001348 786 SCCNMLQ 792 (1094)
Q Consensus 786 ~~~~~l~ 792 (1094)
++|++..
T Consensus 302 ~~N~l~~ 308 (310)
T 4glp_A 302 DGNPFLV 308 (310)
T ss_dssp SSTTTSC
T ss_pred cCCCCCC
Confidence 9998754
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.79 E-value=2.5e-19 Score=192.76 Aligned_cols=210 Identities=16% Similarity=0.171 Sum_probs=145.4
Q ss_pred EeccCCCCccccccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCcc-chhhcccCccceeeccC-ccc
Q 001348 574 YLRGTPIEYVPSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESF-PEILEKMGCLEDIDLEG-TAI 651 (1094)
Q Consensus 574 ~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~-p~~l~~l~~L~~L~L~~-~~i 651 (1094)
.+...+++.+|. +. ++|++|++++|.+.+..+..+.++++|++|++++|..++.+ +..+.++++|++|++++ |.+
T Consensus 17 ~v~c~~l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l 93 (239)
T 2xwt_C 17 RVTCKDIQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL 93 (239)
T ss_dssp EEEECSCSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTC
T ss_pred eeEccCccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCe
Confidence 333434777776 43 37888888888776655556777777777777777633333 34667777777777776 666
Q ss_pred ccccc-hhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccCCccccCCCCCc---EEEccCC-CCCCCCC
Q 001348 652 TELPS-SIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQLPSSITNLNELQ---VVWCSGC-RGLILPP 726 (1094)
Q Consensus 652 ~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p~~l~~l~~L~---~L~l~~~-~~~~lp~ 726 (1094)
+.+|. .+..+++|++|++++| .++.+|. +..+++|+ .|++++| ....+|.
T Consensus 94 ~~i~~~~f~~l~~L~~L~l~~n------------------------~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~ 148 (239)
T 2xwt_C 94 TYIDPDALKELPLLKFLGIFNT------------------------GLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPV 148 (239)
T ss_dssp CEECTTSEECCTTCCEEEEEEE------------------------CCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECT
T ss_pred eEcCHHHhCCCCCCCEEeCCCC------------------------CCccccc-cccccccccccEEECCCCcchhhcCc
Confidence 66653 3445555555555554 4444443 44444444 6666666 4444444
Q ss_pred -CCCCCCCCC-EEeCCCCCCCCCCccccCCCCCCeeecCCC-CCcccch-hhcCC-CCCCEEEccCCCCCCCCCcccccc
Q 001348 727 -SFSGLSYLT-ELDLSCCNLIEIPQDIGCLSLLRSLDLRKN-NFEYLPA-SMKHL-SKLKSLDLSCCNMLQSLPELPLQL 801 (1094)
Q Consensus 727 -~l~~l~~L~-~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n-~l~~lp~-~l~~l-~~L~~L~L~~~~~l~~lp~~~~~L 801 (1094)
.+.++++|+ .|++++|+++.+|......++|+.|+|++| .++.+|. .+..+ ++|+.|+|++|++....+..+.+|
T Consensus 149 ~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L 228 (239)
T 2xwt_C 149 NAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHL 228 (239)
T ss_dssp TTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTC
T ss_pred ccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccC
Confidence 478899999 999999999999887555589999999999 4998864 57888 999999999998875444568889
Q ss_pred cccccccccc
Q 001348 802 KFLQAKDCKQ 811 (1094)
Q Consensus 802 ~~L~~~~c~~ 811 (1094)
+.|.+.++..
T Consensus 229 ~~L~l~~~~~ 238 (239)
T 2xwt_C 229 KELIARNTWT 238 (239)
T ss_dssp SEEECTTC--
T ss_pred ceeeccCccC
Confidence 9999888754
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.79 E-value=7.9e-19 Score=196.46 Aligned_cols=192 Identities=21% Similarity=0.301 Sum_probs=127.0
Q ss_pred cccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccCcccccccchhhccCCCcEEe
Q 001348 589 CLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEGTAITELPSSIEYLGGLTTLN 668 (1094)
Q Consensus 589 ~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~ 668 (1094)
.+++|++|++++|.+.. +| .+..+++|++|++++|.+... +. +.++++|++|++++|.++.++ .+..+++|++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEE
T ss_pred HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEE
Confidence 34455555555544322 33 244455555555555543332 22 555555555555555555554 355566666666
Q ss_pred cCCCCCCCCCCccccCCCcccEEecCCccCccCCccccCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeCCCCCCCCCC
Q 001348 669 LTGCSKLDNLPENLGNLKSLKMLCANESAISQLPSSITNLNELQVVWCSGCRGLILPPSFSGLSYLTELDLSCCNLIEIP 748 (1094)
Q Consensus 669 L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp 748 (1094)
+++|.+.+ ++. +..+++|+.|++++|.++.++. +..+++|+.|++++|....++. +..+++|+.|+|++|.+++++
T Consensus 114 l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~ 189 (308)
T 1h6u_A 114 LTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDIS 189 (308)
T ss_dssp CTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred CCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcCh
Confidence 66655433 332 5666666666776676666654 6677777777777777666655 778888999999999988877
Q ss_pred ccccCCCCCCeeecCCCCCcccchhhcCCCCCCEEEccCCCCC
Q 001348 749 QDIGCLSLLRSLDLRKNNFEYLPASMKHLSKLKSLDLSCCNML 791 (1094)
Q Consensus 749 ~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~~~~l 791 (1094)
. +..+++|+.|+|++|.++.++. +..+++|+.|+|++|++.
T Consensus 190 ~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 190 P-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp G-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEE
T ss_pred h-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeee
Confidence 5 7888999999999999998884 888999999999998764
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.79 E-value=8e-19 Score=196.40 Aligned_cols=194 Identities=20% Similarity=0.274 Sum_probs=166.2
Q ss_pred CccEEEeccCCCCccccccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccC
Q 001348 569 NVRELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEG 648 (1094)
Q Consensus 569 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~ 648 (1094)
+|++|+++++.+..+| .+..+++|++|+|++|.+.+. +. +.++++|++|++++|.+.+ ++ .+..+++|++|++++
T Consensus 42 ~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~ 116 (308)
T 1h6u_A 42 GITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTS 116 (308)
T ss_dssp TCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTT
T ss_pred CcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCC
Confidence 7888888888888887 688899999999999887554 44 8889999999999987554 44 688899999999999
Q ss_pred cccccccchhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccCCccccCCCCCcEEEccCCCCCCCCCCC
Q 001348 649 TAITELPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQLPSSITNLNELQVVWCSGCRGLILPPSF 728 (1094)
Q Consensus 649 ~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l 728 (1094)
|.++.++. +..+++|++|++++|.+.+. +. +..+++|+.|++++|.++.++. +..+++|+.|++++|....++. +
T Consensus 117 n~l~~~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l 191 (308)
T 1h6u_A 117 TQITDVTP-LAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP-L 191 (308)
T ss_dssp SCCCCCGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-G
T ss_pred CCCCCchh-hcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh-h
Confidence 99998876 88999999999999876554 33 8889999999999999998876 8899999999999999877775 8
Q ss_pred CCCCCCCEEeCCCCCCCCCCccccCCCCCCeeecCCCCCcccchh
Q 001348 729 SGLSYLTELDLSCCNLIEIPQDIGCLSLLRSLDLRKNNFEYLPAS 773 (1094)
Q Consensus 729 ~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~ 773 (1094)
..+++|+.|+|++|.++.++. +..+++|+.|+|++|.++..|..
T Consensus 192 ~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~~~~~ 235 (308)
T 1h6u_A 192 ASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPVF 235 (308)
T ss_dssp GGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECCCEE
T ss_pred cCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeecCCee
Confidence 899999999999999999874 88999999999999999887753
No 84
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.78 E-value=3.1e-18 Score=187.93 Aligned_cols=195 Identities=22% Similarity=0.278 Sum_probs=125.3
Q ss_pred ccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccCcccccccchhhccCCCcEEecCC
Q 001348 592 KLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEGTAITELPSSIEYLGGLTTLNLTG 671 (1094)
Q Consensus 592 ~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~ 671 (1094)
++++++++++.+. .+|..+. ++|++|++++|.+....+..+.++++|++|++++|.++.+|..
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~-------------- 79 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG-------------- 79 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTT--------------
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChh--------------
Confidence 3555666655543 3444332 4555555555554444444455555555555555555544433
Q ss_pred CCCCCCCCccccCCCcccEEecCCccCccCCc-cccCCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeCCCCCCCCCCc
Q 001348 672 CSKLDNLPENLGNLKSLKMLCANESAISQLPS-SITNLNELQVVWCSGCRGLILPP-SFSGLSYLTELDLSCCNLIEIPQ 749 (1094)
Q Consensus 672 ~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p~-~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~ 749 (1094)
.+.++++|++|++++|.++.+|. .+..+++|+.|++++|....++. .+..+++|++|+|++|.++.+|.
T Consensus 80 ---------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 150 (270)
T 2o6q_A 80 ---------IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK 150 (270)
T ss_dssp ---------TTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred ---------hhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCH
Confidence 33445555555555555554433 34555666666666666554443 46789999999999999999887
Q ss_pred c-ccCCCCCCeeecCCCCCcccch-hhcCCCCCCEEEccCCCCCCCCCccccccccccccccccc
Q 001348 750 D-IGCLSLLRSLDLRKNNFEYLPA-SMKHLSKLKSLDLSCCNMLQSLPELPLQLKFLQAKDCKQL 812 (1094)
Q Consensus 750 ~-l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~~~c~~l 812 (1094)
. +..+++|+.|+|++|.++.+|. .+..+++|+.|+|++|++.+..+..+..+..|...+...+
T Consensus 151 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 151 GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred hHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCC
Confidence 6 7889999999999999998886 4788999999999999877655555555555544444444
No 85
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.78 E-value=1e-18 Score=191.99 Aligned_cols=204 Identities=20% Similarity=0.208 Sum_probs=116.2
Q ss_pred CccEEEeccCCCCccccccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccC
Q 001348 569 NVRELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEG 648 (1094)
Q Consensus 569 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~ 648 (1094)
+|+.|+++++.+..++ .++.+++|++|++++|.+.+ ++ .+.++++|++|++++|.+.+..+..+.
T Consensus 42 ~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~------------ 106 (272)
T 3rfs_A 42 SIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHD-IS-ALKELTNLTYLILTGNQLQSLPNGVFD------------ 106 (272)
T ss_dssp TCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECTTSCCCCCCTTTTT------------
T ss_pred ceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCccChhHhc------------
Confidence 4455555555554443 24455555555555554433 22 344455555555555444433333344
Q ss_pred cccccccchhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccCCcc-ccCCCCCcEEEccCCCCCCCCCC
Q 001348 649 TAITELPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQLPSS-ITNLNELQVVWCSGCRGLILPPS 727 (1094)
Q Consensus 649 ~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p~~-l~~l~~L~~L~l~~~~~~~lp~~ 727 (1094)
.+++|++|++++|.+.+..+..++.+++|+.|++++|.++.+|.. +..+++|+.|++++|....++..
T Consensus 107 -----------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 175 (272)
T 3rfs_A 107 -----------KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG 175 (272)
T ss_dssp -----------TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred -----------CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHH
Confidence 445555555555444444444455555555555555555554432 34555555555555554444432
Q ss_pred -CCCCCCCCEEeCCCCCCCCCCcc-ccCCCCCCeeecCCCCCcccchhhcCCCCCCEEEccCCCCCCCCCccccccccc
Q 001348 728 -FSGLSYLTELDLSCCNLIEIPQD-IGCLSLLRSLDLRKNNFEYLPASMKHLSKLKSLDLSCCNMLQSLPELPLQLKFL 804 (1094)
Q Consensus 728 -l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L 804 (1094)
+..+++|+.|+|++|.++.+|.. ++.+++|+.|+|++|.+. +.+++|+.|+++.|.+.+.+|..+.++...
T Consensus 176 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~~ 248 (272)
T 3rfs_A 176 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGSVAPD 248 (272)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBCTTSCBCGG
T ss_pred HhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccCcccccCCC
Confidence 56677778888888877776554 577788888888887654 345677788888888888887766655543
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.78 E-value=1.2e-18 Score=195.40 Aligned_cols=197 Identities=18% Similarity=0.098 Sum_probs=163.6
Q ss_pred CccEEEeccCCCC-cccccc--ccccccceeecccccccccch----hhhhcCCcccEEeccCCcccCccchhhcccCcc
Q 001348 569 NVRELYLRGTPIE-YVPSSI--DCLAKLEYLDLGHCTILESIS----TSICKLKSLLKLCLDNCSKLESFPEILEKMGCL 641 (1094)
Q Consensus 569 ~L~~L~L~~~~l~-~lp~~i--~~L~~L~~L~L~~~~~~~~lp----~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L 641 (1094)
+|++|+|++|.+. ..|..+ ..+++|++|+|++|.+.+..| ..+..+++|++|+|++|.+.+..|..++++++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 6999999999887 456666 889999999999998877544 345578999999999999888888889999999
Q ss_pred ceeeccCccccc---ccc--hhhccCCCcEEecCCCCCCCCCCc----cccCCCcccEEecCCccCccC-CccccCC---
Q 001348 642 EDIDLEGTAITE---LPS--SIEYLGGLTTLNLTGCSKLDNLPE----NLGNLKSLKMLCANESAISQL-PSSITNL--- 708 (1094)
Q Consensus 642 ~~L~L~~~~i~~---lp~--~l~~l~~L~~L~L~~~~~~~~lp~----~l~~l~~L~~L~l~~~~i~~~-p~~l~~l--- 708 (1094)
++|+|++|.+.. ++. .++.+++|++|+|++|.+. .++. .++++++|++|++++|.++.. |..+..+
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 999999998763 433 3478899999999998764 3343 257789999999999999876 7777766
Q ss_pred CCCcEEEccCCCCCCCCCCCCCCCCCCEEeCCCCCCCCCCccccCCCCCCeeecCCCCCcc
Q 001348 709 NELQVVWCSGCRGLILPPSFSGLSYLTELDLSCCNLIEIPQDIGCLSLLRSLDLRKNNFEY 769 (1094)
Q Consensus 709 ~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~ 769 (1094)
++|+.|++++|....+|..+. ++|+.|+|++|+++.+|. +..+++|+.|+|++|.++.
T Consensus 251 ~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 251 SALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp TTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTSC
T ss_pred CcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCCC
Confidence 699999999999888888764 899999999999999876 6888999999999998863
No 87
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.77 E-value=3.3e-20 Score=227.91 Aligned_cols=322 Identities=15% Similarity=0.025 Sum_probs=193.6
Q ss_pred CCCCCceEEEEeCCCCCCccccccccccCCccccCcccccEEEecCCCCCCCCC-----CC-Cccccceeeccccccccc
Q 001348 454 ANMPNLRFLKFYMPKLFGISDMVCKLHLPQGLQYLSDELRYLHWHGYPLKMLPS-----NF-TPENLIELNLLYSRIEQL 527 (1094)
Q Consensus 454 ~~l~~Lr~L~l~~n~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~-----~~-~~~~L~~L~L~~n~i~~l 527 (1094)
.++++|+.|++++|.+++.. ...++..+..+ ++|+.|++++|.++.+.. .+ .+++|++|++++|.+..+
T Consensus 161 ~~~~~L~~L~L~~~~~~~~~----~~~l~~~~~~~-~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l 235 (592)
T 3ogk_B 161 THCRKIKTLLMEESSFSEKD----GKWLHELAQHN-TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILEL 235 (592)
T ss_dssp HHCTTCSEEECTTCEEECCC----SHHHHHHHHHC-CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGG
T ss_pred hhCCCCCEEECccccccCcc----hhHHHHHHhcC-CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHH
Confidence 36677777777777653210 00011112222 367777777777763321 11 356777777777777766
Q ss_pred cccCCCCCcCcccCCCCCCCCCeEEeccCCCCCcc---cCC---ccCCccEEEeccCCCCccccccccccccceeecccc
Q 001348 528 WKGKKGCKSLRCFPNNIHFRSPISLNFSYCVNFKE---FPQ---ISGNVRELYLRGTPIEYVPSSIDCLAKLEYLDLGHC 601 (1094)
Q Consensus 528 ~~~~~~l~~L~~~~~~~~~~~l~~L~Ls~~~~l~~---~p~---~~~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~ 601 (1094)
+..+..+++|+ .|+++.+..... .+. ...+|+.|+++++....+|..+..+++|++|+|++|
T Consensus 236 ~~~~~~~~~L~------------~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~ 303 (592)
T 3ogk_B 236 VGFFKAAANLE------------EFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYA 303 (592)
T ss_dssp HHHHHHCTTCC------------EEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTC
T ss_pred HHHHhhhhHHH------------hhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCC
Confidence 65566666666 777664322211 111 112677777777666677777777778888888877
Q ss_pred cccccch-hhhhcCCcccEEeccCCcccCccchhhcccCccceeecc-----------Ccccc--cccchhhccCCCcEE
Q 001348 602 TILESIS-TSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLE-----------GTAIT--ELPSSIEYLGGLTTL 667 (1094)
Q Consensus 602 ~~~~~lp-~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~-----------~~~i~--~lp~~l~~l~~L~~L 667 (1094)
.+..... ..+.++++|++|+++++.....++.....+++|++|+++ .+.++ .++.....+++|++|
T Consensus 304 ~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L 383 (592)
T 3ogk_B 304 LLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYM 383 (592)
T ss_dssp CCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEE
T ss_pred cCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEE
Confidence 7443322 335667788888877443334455555677778888887 24554 233445567778888
Q ss_pred ecCCCCCCCCCCccccC-CCcccEEecC----CccCccCC------ccccCCCCCcEEEccCCCCC---CCCCC-CCCCC
Q 001348 668 NLTGCSKLDNLPENLGN-LKSLKMLCAN----ESAISQLP------SSITNLNELQVVWCSGCRGL---ILPPS-FSGLS 732 (1094)
Q Consensus 668 ~L~~~~~~~~lp~~l~~-l~~L~~L~l~----~~~i~~~p------~~l~~l~~L~~L~l~~~~~~---~lp~~-l~~l~ 732 (1094)
+++.+.+.+..+..++. +++|+.|+++ .|.++..| ..+..+++|+.|+++.|... ..+.. ...++
T Consensus 384 ~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~ 463 (592)
T 3ogk_B 384 AVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSP 463 (592)
T ss_dssp EEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCT
T ss_pred EeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCc
Confidence 87665555544445544 7777777775 55565433 22556777777777654421 11111 12366
Q ss_pred CCCEEeCCCCCCCC--CCccccCCCCCCeeecCCCCCc--ccchhhcCCCCCCEEEccCCCCCC
Q 001348 733 YLTELDLSCCNLIE--IPQDIGCLSLLRSLDLRKNNFE--YLPASMKHLSKLKSLDLSCCNMLQ 792 (1094)
Q Consensus 733 ~L~~L~Ls~n~l~~--lp~~l~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~~~~l~ 792 (1094)
+|+.|+|++|++++ ++..+..+++|+.|+|++|.++ .++..+..+++|+.|+|++|++..
T Consensus 464 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 464 NVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp TCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred cceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 77777777777764 4445566777777888777766 244445667777777777777543
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.77 E-value=5.4e-20 Score=213.21 Aligned_cols=227 Identities=18% Similarity=0.203 Sum_probs=148.9
Q ss_pred CccEEEeccCCCCc-----cccccccccccceeeccccc---ccccchhhh-------hcCCcccEEeccCCcccC----
Q 001348 569 NVRELYLRGTPIEY-----VPSSIDCLAKLEYLDLGHCT---ILESISTSI-------CKLKSLLKLCLDNCSKLE---- 629 (1094)
Q Consensus 569 ~L~~L~L~~~~l~~-----lp~~i~~L~~L~~L~L~~~~---~~~~lp~~i-------~~l~~L~~L~L~~~~~~~---- 629 (1094)
+|++|+|++|.+.. ++..+..+++|++|+|++|. +.+.+|..+ .++++|++|+|++|.+..
T Consensus 33 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 112 (386)
T 2ca6_A 33 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE 112 (386)
T ss_dssp CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHH
T ss_pred CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHH
Confidence 34444444444442 23334556666666666542 222334333 456666777776666555
Q ss_pred ccchhhcccCccceeeccCcccc-----cccchhhcc---------CCCcEEecCCCCCC-CCCC---ccccCCCcccEE
Q 001348 630 SFPEILEKMGCLEDIDLEGTAIT-----ELPSSIEYL---------GGLTTLNLTGCSKL-DNLP---ENLGNLKSLKML 691 (1094)
Q Consensus 630 ~~p~~l~~l~~L~~L~L~~~~i~-----~lp~~l~~l---------~~L~~L~L~~~~~~-~~lp---~~l~~l~~L~~L 691 (1094)
.+|..+.++++|++|+|++|.++ .++..+..+ ++|++|++++|.+. ..+| ..+..+++|+.|
T Consensus 113 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 192 (386)
T 2ca6_A 113 PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV 192 (386)
T ss_dssp HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEE
Confidence 35666666667777777776665 223334444 67777777776655 3333 345566777777
Q ss_pred ecCCccCc------cCCccccCCCCCcEEEccCCCC-----CCCCCCCCCCCCCCEEeCCCCCCCC-----CCccc--cC
Q 001348 692 CANESAIS------QLPSSITNLNELQVVWCSGCRG-----LILPPSFSGLSYLTELDLSCCNLIE-----IPQDI--GC 753 (1094)
Q Consensus 692 ~l~~~~i~------~~p~~l~~l~~L~~L~l~~~~~-----~~lp~~l~~l~~L~~L~Ls~n~l~~-----lp~~l--~~ 753 (1094)
++++|.++ -++..+..+++|+.|++++|.. ..+|..+..+++|+.|+|++|.++. +|..+ +.
T Consensus 193 ~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~ 272 (386)
T 2ca6_A 193 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE 272 (386)
T ss_dssp ECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCS
T ss_pred ECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhcc
Confidence 77777766 1233667777788888877775 4456667788889999999998875 45666 44
Q ss_pred CCCCCeeecCCCCCcc-----cchhh-cCCCCCCEEEccCCCCCCCCC
Q 001348 754 LSLLRSLDLRKNNFEY-----LPASM-KHLSKLKSLDLSCCNMLQSLP 795 (1094)
Q Consensus 754 l~~L~~L~L~~n~l~~-----lp~~l-~~l~~L~~L~L~~~~~l~~lp 795 (1094)
+++|+.|+|++|.++. +|..+ .++++|+.|+|++|++.+..|
T Consensus 273 ~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 8899999999999987 88877 668999999999998876654
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.77 E-value=1.5e-19 Score=205.12 Aligned_cols=228 Identities=18% Similarity=0.211 Sum_probs=152.2
Q ss_pred CccEEEeccCCCCccccccccccccceeeccccccccc-chhhhhcCCcccEEeccCCcccCccchhhcccCccceeecc
Q 001348 569 NVRELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILES-ISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLE 647 (1094)
Q Consensus 569 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~-lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~ 647 (1094)
+++.|+++++.+...+..+..+++|++|+|++|.+... +|..+.++++|++|++++|...+..|..+..+++|++|+++
T Consensus 71 ~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~ 150 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 150 (336)
T ss_dssp TCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred cceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECC
Confidence 67888888888887777777888888888888887655 77777888888888888887777777788888888888888
Q ss_pred Cc-ccc--cccchhhccCCCcEEecCCC-CCCCC-CCccccCCC-cccEEecCCcc--C--ccCCccccCCCCCcEEEcc
Q 001348 648 GT-AIT--ELPSSIEYLGGLTTLNLTGC-SKLDN-LPENLGNLK-SLKMLCANESA--I--SQLPSSITNLNELQVVWCS 717 (1094)
Q Consensus 648 ~~-~i~--~lp~~l~~l~~L~~L~L~~~-~~~~~-lp~~l~~l~-~L~~L~l~~~~--i--~~~p~~l~~l~~L~~L~l~ 717 (1094)
+| .++ .++..+..+++|++|++++| .+.+. ++..+..++ +|+.|++++|. + ..+|..+..+++|+.|+++
T Consensus 151 ~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~ 230 (336)
T 2ast_B 151 GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 230 (336)
T ss_dssp TCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECT
T ss_pred CCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCC
Confidence 88 676 36777788888888888888 54432 566677777 88888888774 3 2455556666777777777
Q ss_pred CCCC--CCCCCCCCCCCCCCEEeCCCCC-CCC-CCccccCCCCCCeeecCCCCCcccchhhcCC-CCCCEEEccCCCCCC
Q 001348 718 GCRG--LILPPSFSGLSYLTELDLSCCN-LIE-IPQDIGCLSLLRSLDLRKNNFEYLPASMKHL-SKLKSLDLSCCNMLQ 792 (1094)
Q Consensus 718 ~~~~--~~lp~~l~~l~~L~~L~Ls~n~-l~~-lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l-~~L~~L~L~~~~~l~ 792 (1094)
+|.. ...+..+..+++|+.|+|++|. +.. ....++.+++|+.|+|++| ++. ..+..+ .+|+.|++++|.+.+
T Consensus 231 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~--~~~~~l~~~l~~L~l~~n~l~~ 307 (336)
T 2ast_B 231 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD--GTLQLLKEALPHLQINCSHFTT 307 (336)
T ss_dssp TCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT--TCHHHHHHHSTTSEESCCCSCC
T ss_pred CCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH--HHHHHHHhhCcceEEecccCcc
Confidence 6662 2334455666666666666663 221 1123555666666666666 221 011111 124444466666666
Q ss_pred CCCcccc
Q 001348 793 SLPELPL 799 (1094)
Q Consensus 793 ~lp~~~~ 799 (1094)
..|....
T Consensus 308 ~~~~~~~ 314 (336)
T 2ast_B 308 IARPTIG 314 (336)
T ss_dssp TTCSSCS
T ss_pred ccCCccc
Confidence 5555443
No 90
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.76 E-value=1e-17 Score=185.44 Aligned_cols=192 Identities=22% Similarity=0.245 Sum_probs=149.0
Q ss_pred EEeccCCCCCcccCCcc-CCccEEEeccCCCCcc-ccccccccccceeecccccccccchhhhhcCCcccEEeccCCccc
Q 001348 551 SLNFSYCVNFKEFPQIS-GNVRELYLRGTPIEYV-PSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKL 628 (1094)
Q Consensus 551 ~L~Ls~~~~l~~~p~~~-~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~ 628 (1094)
.++++++ .++.+|... .+++.|+|++|.+..+ |..+..+++|++|+|++|.+.+. |.. +.+++|++|++++|.+.
T Consensus 14 ~l~~~~~-~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~~L~Ls~N~l~ 90 (290)
T 1p9a_G 14 EVNCDKR-NLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLGTLDLSHNQLQ 90 (290)
T ss_dssp EEECTTS-CCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCCEEECCSSCCS
T ss_pred EEECCCC-CCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCCEEECCCCcCC
Confidence 5555543 244454333 3788999999999877 46789999999999999987654 442 77999999999998764
Q ss_pred CccchhhcccCccceeeccCccccccc-chhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccCCccccC
Q 001348 629 ESFPEILEKMGCLEDIDLEGTAITELP-SSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQLPSSITN 707 (1094)
Q Consensus 629 ~~~p~~l~~l~~L~~L~L~~~~i~~lp-~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p~~l~~ 707 (1094)
.+|..+..+++|++|++++|.++.+| ..+..+++|++|+|++|.+....+..+..+++|+.|++++|.++.+|...
T Consensus 91 -~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~-- 167 (290)
T 1p9a_G 91 -SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL-- 167 (290)
T ss_dssp -SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTT--
T ss_pred -cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHH--
Confidence 78888999999999999999999887 46899999999999999887766667888999999999999888776532
Q ss_pred CCCCcEEEccCCCCCCCCCCCCCCCCCCEEeCCCCCCCCCCccccCCCCCCeeecCCCCCc
Q 001348 708 LNELQVVWCSGCRGLILPPSFSGLSYLTELDLSCCNLIEIPQDIGCLSLLRSLDLRKNNFE 768 (1094)
Q Consensus 708 l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~ 768 (1094)
+..+++|+.|+|++|.++.+|..+..+++|+.|+|++|.+.
T Consensus 168 --------------------~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 168 --------------------LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp --------------------TTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred --------------------hcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 34555666666666666666666666666777777776654
No 91
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.75 E-value=9.5e-18 Score=184.20 Aligned_cols=211 Identities=23% Similarity=0.300 Sum_probs=172.6
Q ss_pred ccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccCcccccccchhhccCCCcEEec
Q 001348 590 LAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEGTAITELPSSIEYLGGLTTLNL 669 (1094)
Q Consensus 590 L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L 669 (1094)
+.++..+++..+.+..... +..+++|+.|++++|... .+ ..+..+++|++|++++|.++.++ .+..+++|++|++
T Consensus 18 ~~~l~~l~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~-~~-~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L 92 (272)
T 3rfs_A 18 FAETIKANLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLIL 92 (272)
T ss_dssp HHHHHHHHHTCSCTTSEEC--HHHHTTCCEEECTTSCCC-CC-TTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEEC
T ss_pred HHHHHHHHhcCcccccccc--cccccceeeeeeCCCCcc-cc-cccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEEC
Confidence 4456666676665544332 556888888888887644 33 34778889999999999988875 6889999999999
Q ss_pred CCCCCCCCCCccccCCCcccEEecCCccCccCCcc-ccCCCCCcEEEccCCCCCCCCCC-CCCCCCCCEEeCCCCCCCCC
Q 001348 670 TGCSKLDNLPENLGNLKSLKMLCANESAISQLPSS-ITNLNELQVVWCSGCRGLILPPS-FSGLSYLTELDLSCCNLIEI 747 (1094)
Q Consensus 670 ~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p~~-l~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~Ls~n~l~~l 747 (1094)
++|.+.+..+..+.++++|++|++++|.++.++.. +..+++|+.|++++|....++.. +..+++|+.|+|++|+++.+
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 172 (272)
T 3rfs_A 93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL 172 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc
Confidence 99988877777789999999999999999988654 78999999999999998777664 68999999999999999987
Q ss_pred Ccc-ccCCCCCCeeecCCCCCcccchh-hcCCCCCCEEEccCCCCCCCCCcccccccccccccc
Q 001348 748 PQD-IGCLSLLRSLDLRKNNFEYLPAS-MKHLSKLKSLDLSCCNMLQSLPELPLQLKFLQAKDC 809 (1094)
Q Consensus 748 p~~-l~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~~~~c 809 (1094)
|.. ++.+++|+.|+|++|+++.+|.. +..+++|+.|+|++|++.+..| +|+.|....+
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~----~l~~l~~~~n 232 (272)
T 3rfs_A 173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP----GIRYLSEWIN 232 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT----TTHHHHHHHH
T ss_pred CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc----HHHHHHHHHH
Confidence 765 68899999999999999988764 6889999999999999876655 4566655543
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.75 E-value=9.9e-20 Score=210.98 Aligned_cols=241 Identities=16% Similarity=0.103 Sum_probs=190.9
Q ss_pred CccEEEeccCCCCccccccccccccceeecccccccccchh----hhhcCCcccEEeccCCc---ccCccchhh------
Q 001348 569 NVRELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILESIST----SICKLKSLLKLCLDNCS---KLESFPEIL------ 635 (1094)
Q Consensus 569 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~----~i~~l~~L~~L~L~~~~---~~~~~p~~l------ 635 (1094)
.|+...+....+..++..+..+++|++|+|++|.+....+. .+.++++|++|+|++|. +.+.+|..+
T Consensus 10 ~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~ 89 (386)
T 2ca6_A 10 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89 (386)
T ss_dssp CCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHH
Confidence 34455555556667888889999999999999998776443 46689999999999974 333455544
Q ss_pred -cccCccceeeccCccccc-----ccchhhccCCCcEEecCCCCCCCCC----CccccCC---------CcccEEecCCc
Q 001348 636 -EKMGCLEDIDLEGTAITE-----LPSSIEYLGGLTTLNLTGCSKLDNL----PENLGNL---------KSLKMLCANES 696 (1094)
Q Consensus 636 -~~l~~L~~L~L~~~~i~~-----lp~~l~~l~~L~~L~L~~~~~~~~l----p~~l~~l---------~~L~~L~l~~~ 696 (1094)
..+++|++|+|++|.++. +|..+..+++|++|+|++|.+.... +..+..+ ++|++|++++|
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 789999999999999986 7888999999999999999875333 3334444 89999999999
Q ss_pred cCc--cCC---ccccCCCCCcEEEccCCCCC------CCCCCCCCCCCCCEEeCCCCCCC-----CCCccccCCCCCCee
Q 001348 697 AIS--QLP---SSITNLNELQVVWCSGCRGL------ILPPSFSGLSYLTELDLSCCNLI-----EIPQDIGCLSLLRSL 760 (1094)
Q Consensus 697 ~i~--~~p---~~l~~l~~L~~L~l~~~~~~------~lp~~l~~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L 760 (1094)
.++ .++ ..+..+++|+.|++++|... ..+..+..+++|+.|+|++|.++ .+|..+..+++|+.|
T Consensus 170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L 249 (386)
T 2ca6_A 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 249 (386)
T ss_dssp CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEE
Confidence 997 344 46778899999999999865 34447889999999999999994 478888999999999
Q ss_pred ecCCCCCcc-----cchhhcC--CCCCCEEEccCCCCCC----CCCccc----ccccccccccc
Q 001348 761 DLRKNNFEY-----LPASMKH--LSKLKSLDLSCCNMLQ----SLPELP----LQLKFLQAKDC 809 (1094)
Q Consensus 761 ~L~~n~l~~-----lp~~l~~--l~~L~~L~L~~~~~l~----~lp~~~----~~L~~L~~~~c 809 (1094)
+|++|.++. +|..+.. +++|+.|+|++|.+.. .+|..+ ++|+.|++.+|
T Consensus 250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence 999999984 4677744 9999999999999877 476543 44555554443
No 93
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.74 E-value=7.8e-20 Score=224.56 Aligned_cols=257 Identities=16% Similarity=0.057 Sum_probs=162.4
Q ss_pred EEeccCCCCCcccCCccC---CccEEEeccCCC----CccccccccccccceeecccccccccchhhhhcCCcccEEecc
Q 001348 551 SLNFSYCVNFKEFPQISG---NVRELYLRGTPI----EYVPSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLD 623 (1094)
Q Consensus 551 ~L~Ls~~~~l~~~p~~~~---~L~~L~L~~~~l----~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~ 623 (1094)
.|++++|. +..+|..+. +|+.|++++... ...+..+..+++|+.|+++++. ...+|..+..+++|++|+|+
T Consensus 224 ~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls 301 (592)
T 3ogk_B 224 SVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLL 301 (592)
T ss_dssp EEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEET
T ss_pred EEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecC
Confidence 66665543 222332222 556666654211 1233445556666666666542 35566667778888888888
Q ss_pred CCcccCc-cchhhcccCccceeeccCcccc--cccchhhccCCCcEEecCC----------CCCCCC--CCccccCCCcc
Q 001348 624 NCSKLES-FPEILEKMGCLEDIDLEGTAIT--ELPSSIEYLGGLTTLNLTG----------CSKLDN--LPENLGNLKSL 688 (1094)
Q Consensus 624 ~~~~~~~-~p~~l~~l~~L~~L~L~~~~i~--~lp~~l~~l~~L~~L~L~~----------~~~~~~--lp~~l~~l~~L 688 (1094)
+|..... ++..+..+++|++|+++ +.+. .++.....+++|++|++++ |..... ++.....+++|
T Consensus 302 ~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L 380 (592)
T 3ogk_B 302 YALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQEL 380 (592)
T ss_dssp TCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTC
T ss_pred CCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccC
Confidence 8874433 33456788888888888 4443 4445556788899999884 544332 23334567889
Q ss_pred cEEecCCccCcc-CCccccC-CCCCcEEEccC----CCCCCCC------CCCCCCCCCCEEeCCCCC--CCC-CCcc-cc
Q 001348 689 KMLCANESAISQ-LPSSITN-LNELQVVWCSG----CRGLILP------PSFSGLSYLTELDLSCCN--LIE-IPQD-IG 752 (1094)
Q Consensus 689 ~~L~l~~~~i~~-~p~~l~~-l~~L~~L~l~~----~~~~~lp------~~l~~l~~L~~L~Ls~n~--l~~-lp~~-l~ 752 (1094)
+.|++..+.++. .+..+.. +++|+.|++++ +.....| ..+.++++|+.|+|++|. +++ .+.. ..
T Consensus 381 ~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~ 460 (592)
T 3ogk_B 381 EYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ 460 (592)
T ss_dssp SEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHH
T ss_pred eEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHH
Confidence 999887777763 2334443 78899998863 3333322 225568899999998764 443 2222 23
Q ss_pred CCCCCCeeecCCCCCc--ccchhhcCCCCCCEEEccCCCCCCC-CCc---cccccccccccccc
Q 001348 753 CLSLLRSLDLRKNNFE--YLPASMKHLSKLKSLDLSCCNMLQS-LPE---LPLQLKFLQAKDCK 810 (1094)
Q Consensus 753 ~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~~~~l~~-lp~---~~~~L~~L~~~~c~ 810 (1094)
.+++|+.|+|++|+++ .++..+..+++|++|+|++|++... ++. .+++|+.|++.+|.
T Consensus 461 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 461 YSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp SCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred hCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 4788999999999987 4566678889999999999985432 232 34677777777775
No 94
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.74 E-value=4.7e-18 Score=204.13 Aligned_cols=186 Identities=20% Similarity=0.263 Sum_probs=103.4
Q ss_pred CccEEEeccCCCCccccccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccC
Q 001348 569 NVRELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEG 648 (1094)
Q Consensus 569 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~ 648 (1094)
+|+.|+|++|+++.+|..+. ++|++|+|++|.+. .+| ..+++|++|+|++|.+.+ +|. +.+ +|++|++++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence 56666666666666665553 56666666666554 444 234555555555554443 444 333 555555555
Q ss_pred cccccccchhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccCCccccCCCCCcEEEccCCCCCCCCCCC
Q 001348 649 TAITELPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQLPSSITNLNELQVVWCSGCRGLILPPSF 728 (1094)
Q Consensus 649 ~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l 728 (1094)
|.++.+|. .+++|+.|+| ++|.++.+|. .+++|+.|++++|....+|. +
T Consensus 130 N~l~~lp~---~l~~L~~L~L------------------------s~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l 178 (571)
T 3cvr_A 130 NQLTMLPE---LPALLEYINA------------------------DNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-L 178 (571)
T ss_dssp SCCSCCCC---CCTTCCEEEC------------------------CSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-C
T ss_pred CcCCCCCC---cCccccEEeC------------------------CCCccCcCCC---cCCCcCEEECCCCCCCCcch-h
Confidence 55555544 3444455554 4444444443 34455555555555444554 3
Q ss_pred CCCCCCCEEeCCCCCCCCCCccccCCCCC-------CeeecCCCCCcccchhhcCCCCCCEEEccCCCCCCCCCccccc
Q 001348 729 SGLSYLTELDLSCCNLIEIPQDIGCLSLL-------RSLDLRKNNFEYLPASMKHLSKLKSLDLSCCNMLQSLPELPLQ 800 (1094)
Q Consensus 729 ~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L-------~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~~~ 800 (1094)
. ++|+.|+|++|+++.+|. +.. +| +.|+|++|+|+.+|..+..+++|+.|+|++|++.+.+|..+..
T Consensus 179 ~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 179 P--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp C--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred h--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 3 566666666666666665 432 55 6667777766666666666667777777777666655544333
No 95
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.73 E-value=9.5e-19 Score=198.59 Aligned_cols=235 Identities=20% Similarity=0.220 Sum_probs=189.4
Q ss_pred CccEEEeccCCCCccccccccc--cccceeecccccccccchhhhhcCCcccEEeccCCcccCc-cchhhcccCccceee
Q 001348 569 NVRELYLRGTPIEYVPSSIDCL--AKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLES-FPEILEKMGCLEDID 645 (1094)
Q Consensus 569 ~L~~L~L~~~~l~~lp~~i~~L--~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~-~p~~l~~l~~L~~L~ 645 (1094)
.++.|+++++.+. |..+..+ ++++.|++++|.+.+..+. +.++++|++|++++|.+... +|..+..+++|++|+
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 3677888887766 5566777 8999999999998777666 56799999999999987765 888999999999999
Q ss_pred ccCcccc-cccchhhccCCCcEEecCCCCCCC--CCCccccCCCcccEEecCCc-cCcc--CCccccCCC-CCcEEEccC
Q 001348 646 LEGTAIT-ELPSSIEYLGGLTTLNLTGCSKLD--NLPENLGNLKSLKMLCANES-AISQ--LPSSITNLN-ELQVVWCSG 718 (1094)
Q Consensus 646 L~~~~i~-~lp~~l~~l~~L~~L~L~~~~~~~--~lp~~l~~l~~L~~L~l~~~-~i~~--~p~~l~~l~-~L~~L~l~~ 718 (1094)
+++|.++ ..|..++.+++|++|++++|.... .++..+.++++|++|++++| .++. ++..+..++ +|+.|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 9999988 677889999999999999995444 37777889999999999999 8884 677788899 999999999
Q ss_pred CCC----CCCCCCCCCCCCCCEEeCCCCC-CC-CCCccccCCCCCCeeecCCCC-Cc-ccchhhcCCCCCCEEEccCCCC
Q 001348 719 CRG----LILPPSFSGLSYLTELDLSCCN-LI-EIPQDIGCLSLLRSLDLRKNN-FE-YLPASMKHLSKLKSLDLSCCNM 790 (1094)
Q Consensus 719 ~~~----~~lp~~l~~l~~L~~L~Ls~n~-l~-~lp~~l~~l~~L~~L~L~~n~-l~-~lp~~l~~l~~L~~L~L~~~~~ 790 (1094)
|.. ..++..+..+++|+.|+|++|. ++ ..+..+..+++|+.|+|++|. +. .....+..+++|+.|+|++| .
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i 283 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-V 283 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-S
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-c
Confidence 952 3456667789999999999998 55 466788899999999999995 32 11125788999999999999 2
Q ss_pred CC-CCCcccccccccccc
Q 001348 791 LQ-SLPELPLQLKFLQAK 807 (1094)
Q Consensus 791 l~-~lp~~~~~L~~L~~~ 807 (1094)
.. .+.....+++.|++.
T Consensus 284 ~~~~~~~l~~~l~~L~l~ 301 (336)
T 2ast_B 284 PDGTLQLLKEALPHLQIN 301 (336)
T ss_dssp CTTCHHHHHHHSTTSEES
T ss_pred CHHHHHHHHhhCcceEEe
Confidence 22 122233457777753
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.73 E-value=2.5e-17 Score=187.94 Aligned_cols=219 Identities=23% Similarity=0.265 Sum_probs=117.1
Q ss_pred EEeccCCCCCcccCCcc-CCccEEEeccCCCCcccc-ccccccccceeecccccccccchh-hhhcCCcccEEe-ccCCc
Q 001348 551 SLNFSYCVNFKEFPQIS-GNVRELYLRGTPIEYVPS-SIDCLAKLEYLDLGHCTILESIST-SICKLKSLLKLC-LDNCS 626 (1094)
Q Consensus 551 ~L~Ls~~~~l~~~p~~~-~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~-~i~~l~~L~~L~-L~~~~ 626 (1094)
+++.++. .++++|..+ .++++|+|++|.|+.+|. .|.++++|++|+|++|.+.+.+|. .|.++++|+.+. +.+|.
T Consensus 13 ~v~C~~~-~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 13 VFLCQES-KVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp EEEEEST-TCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred EEEecCC-CCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 4444333 466666533 367777777777777765 467777777777777776665553 355666665533 33444
Q ss_pred ccCccchhhcccCccceeeccCcccccccc-hhhccCCCcEEecCCCCCCCCCCc-cccCCC-cccEEecCCccCccCCc
Q 001348 627 KLESFPEILEKMGCLEDIDLEGTAITELPS-SIEYLGGLTTLNLTGCSKLDNLPE-NLGNLK-SLKMLCANESAISQLPS 703 (1094)
Q Consensus 627 ~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~-~l~~l~-~L~~L~l~~~~i~~~p~ 703 (1094)
+....|..+.++++|++|++++|.++.+|. .+....++..|++.++..+..+|. .+..+. .|+.|++++|.++.+|.
T Consensus 92 l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~ 171 (350)
T 4ay9_X 92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN 171 (350)
T ss_dssp CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECT
T ss_pred ccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCCh
Confidence 444445666677777777777777666554 233444555666655444444433 233332 34555555555555544
Q ss_pred cccCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeCCC-CCCCCCCcc-ccCCCCCCeeecCCCCCcccchhhcCCCCCC
Q 001348 704 SITNLNELQVVWCSGCRGLILPPSFSGLSYLTELDLSC-CNLIEIPQD-IGCLSLLRSLDLRKNNFEYLPASMKHLSKLK 781 (1094)
Q Consensus 704 ~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~-n~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~ 781 (1094)
..... .+|++|++++ |.++.+|.. +..+++|+.|+|++|+|+.+|.. .+.+|+
T Consensus 172 ~~f~~-----------------------~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~ 226 (350)
T 4ay9_X 172 SAFNG-----------------------TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLK 226 (350)
T ss_dssp TSSTT-----------------------EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCC
T ss_pred hhccc-----------------------cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccch
Confidence 43333 3444444442 334444432 34455555555555555555432 244455
Q ss_pred EEEccCCCCCCCCC
Q 001348 782 SLDLSCCNMLQSLP 795 (1094)
Q Consensus 782 ~L~L~~~~~l~~lp 795 (1094)
.|.+.+|..++.+|
T Consensus 227 ~L~~l~~~~l~~lP 240 (350)
T 4ay9_X 227 KLRARSTYNLKKLP 240 (350)
T ss_dssp EEECTTCTTCCCCC
T ss_pred HhhhccCCCcCcCC
Confidence 55555554444444
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.72 E-value=2.4e-17 Score=197.99 Aligned_cols=191 Identities=21% Similarity=0.259 Sum_probs=148.2
Q ss_pred CeEEeccCCCCCcccCC-ccCCccEEEeccCCCCccccccccccccceeecccccccccchhhhhcCCcccEEeccCCcc
Q 001348 549 PISLNFSYCVNFKEFPQ-ISGNVRELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSK 627 (1094)
Q Consensus 549 l~~L~Ls~~~~l~~~p~-~~~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~ 627 (1094)
++.|+++++. +..+|. ...+|++|+|++|.|+.+| ..+++|++|+|++|.+.+ +|. +.+ +|++|+|++|.+
T Consensus 61 L~~L~Ls~n~-L~~lp~~l~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l 132 (571)
T 3cvr_A 61 FSELQLNRLN-LSSLPDNLPPQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQL 132 (571)
T ss_dssp CSEEECCSSC-CSCCCSCCCTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCC
T ss_pred ccEEEeCCCC-CCccCHhHcCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcC
Confidence 3399999985 666887 4459999999999999999 558999999999998876 777 655 999999999987
Q ss_pred cCccchhhcccCccceeeccCcccccccchhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccCCccccC
Q 001348 628 LESFPEILEKMGCLEDIDLEGTAITELPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQLPSSITN 707 (1094)
Q Consensus 628 ~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p~~l~~ 707 (1094)
.+ +|. .+++|++|++++|.++.+|. .+++|+.|+|++|.+.+ +|. +. ++|+.|++++|.++.+|. +..
T Consensus 133 ~~-lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~ 200 (571)
T 3cvr_A 133 TM-LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESLPA-VPV 200 (571)
T ss_dssp SC-CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSCCC-CC-
T ss_pred CC-CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCchhh-HHH
Confidence 66 776 68999999999999999887 57888888888887655 666 54 777778887777777665 332
Q ss_pred CCCCcEEEccCCCCCCCCCCCCCCCCCCEEeCCCCCCCCCCccccCCCCCCeeecCCCCCc-ccchhhcCC
Q 001348 708 LNELQVVWCSGCRGLILPPSFSGLSYLTELDLSCCNLIEIPQDIGCLSLLRSLDLRKNNFE-YLPASMKHL 777 (1094)
Q Consensus 708 l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l 777 (1094)
+| ....+.|+.|+|++|.++.+|..+..+++|+.|+|++|.++ .+|..+..+
T Consensus 201 --~L----------------~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 201 --RN----------------HHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp -------------------------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred --hh----------------hcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 22 11223458888888888888888888888888888888887 556555443
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.72 E-value=7.3e-17 Score=184.02 Aligned_cols=198 Identities=19% Similarity=0.235 Sum_probs=147.7
Q ss_pred cEEEecCCCCCCCCCCCCccccceeecccccccccccc-CCCCCcCcccCCCCCCCCCeEEeccCCCCCcccCCcc-C--
Q 001348 493 RYLHWHGYPLKMLPSNFTPENLIELNLLYSRIEQLWKG-KKGCKSLRCFPNNIHFRSPISLNFSYCVNFKEFPQIS-G-- 568 (1094)
Q Consensus 493 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~i~~l~~~-~~~l~~L~~~~~~~~~~~l~~L~Ls~~~~l~~~p~~~-~-- 568 (1094)
+.++.+++.++.+|..+ +.++++|+|++|+|+.++.+ +.++++|+ .|+|++|..++.+|... .
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~------------~L~Ls~N~i~~~i~~~~f~~L 78 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLE------------KIEISQNDVLEVIEADVFSNL 78 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCC------------EEEEECCTTCCEECTTSBCSC
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCC------------EEECcCCCCCCccChhHhhcc
Confidence 45666777777777665 46777788888877777654 56677777 77887776666555321 2
Q ss_pred -Ccc-EEEeccCCCCcc-ccccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccch-hhccc-Cccce
Q 001348 569 -NVR-ELYLRGTPIEYV-PSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPE-ILEKM-GCLED 643 (1094)
Q Consensus 569 -~L~-~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~-~l~~l-~~L~~ 643 (1094)
++. .+.+.+|++..+ |..+..+++|++|++++|.+....+..+....++..|++.++..+..+|. .+..+ ..|+.
T Consensus 79 ~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~ 158 (350)
T 4ay9_X 79 PKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVI 158 (350)
T ss_dssp TTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEE
T ss_pred hhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhh
Confidence 444 466677899988 45678999999999999988776666666677888999988766666654 45555 46888
Q ss_pred eeccCcccccccchhhccCCCcEEecCCCCCCCCCCc-cccCCCcccEEecCCccCccCCc
Q 001348 644 IDLEGTAITELPSSIEYLGGLTTLNLTGCSKLDNLPE-NLGNLKSLKMLCANESAISQLPS 703 (1094)
Q Consensus 644 L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~-~l~~l~~L~~L~l~~~~i~~~p~ 703 (1094)
|++++|.|+.+|..+....+|+.|++.+|+.++.+|. .+.++++|+.|++++|.++.+|.
T Consensus 159 L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~ 219 (350)
T 4ay9_X 159 LWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 219 (350)
T ss_dssp EECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS
T ss_pred hccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh
Confidence 9999999999988877778899999988777877775 46778888888888888877765
No 99
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.72 E-value=9e-17 Score=174.12 Aligned_cols=176 Identities=25% Similarity=0.331 Sum_probs=119.8
Q ss_pred CccEEEeccCCCCccccccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccC
Q 001348 569 NVRELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEG 648 (1094)
Q Consensus 569 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~ 648 (1094)
+.+.++++++.++.+|..+. ++|+.|+|++|.+.+..|..+.++++|++|+|++|.+.+..|..+.++++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 46678888888888887765 5788888888888777777778888888888888877776666777777777777777
Q ss_pred cccccccc-hhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccCCccccCCCCCcEEEccCCCCCCCCCC
Q 001348 649 TAITELPS-SIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQLPSSITNLNELQVVWCSGCRGLILPPS 727 (1094)
Q Consensus 649 ~~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~~~~lp~~ 727 (1094)
|.++.+|. .+..+++|++|+|++|.+.+..+..+..+++|+.|++++|.++.+|. ..
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----------------------~~ 150 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA----------------------GA 150 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----------------------TT
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH----------------------HH
Confidence 77776654 34556666666666655443333334555555555555555544432 13
Q ss_pred CCCCCCCCEEeCCCCCCCCCCc-cccCCCCCCeeecCCCCCc
Q 001348 728 FSGLSYLTELDLSCCNLIEIPQ-DIGCLSLLRSLDLRKNNFE 768 (1094)
Q Consensus 728 l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~l~ 768 (1094)
+..+++|+.|+|++|.++.+|. .+..+++|+.|+|++|.+.
T Consensus 151 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 151 FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred cCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 5666677777777777776654 4666777777777777765
No 100
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.71 E-value=2e-18 Score=198.11 Aligned_cols=225 Identities=16% Similarity=0.097 Sum_probs=139.6
Q ss_pred CccEEEeccCCCCccc-----ccccccc-ccceeecccccccccchhhhhcC-----CcccEEeccCCcccCccchhhcc
Q 001348 569 NVRELYLRGTPIEYVP-----SSIDCLA-KLEYLDLGHCTILESISTSICKL-----KSLLKLCLDNCSKLESFPEILEK 637 (1094)
Q Consensus 569 ~L~~L~L~~~~l~~lp-----~~i~~L~-~L~~L~L~~~~~~~~lp~~i~~l-----~~L~~L~L~~~~~~~~~p~~l~~ 637 (1094)
+|++|+|++|.+..++ ..+..++ +|++|+|++|.+....+..+..+ ++|++|+|++|.+....+..+..
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 102 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK 102 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence 4777777777777664 4556666 78888888777766666666654 77888888877766665554433
Q ss_pred c-----CccceeeccCcccccccc-h----hhc-cCCCcEEecCCCCCCCC----CCccccCCC-cccEEecCCccCccC
Q 001348 638 M-----GCLEDIDLEGTAITELPS-S----IEY-LGGLTTLNLTGCSKLDN----LPENLGNLK-SLKMLCANESAISQL 701 (1094)
Q Consensus 638 l-----~~L~~L~L~~~~i~~lp~-~----l~~-l~~L~~L~L~~~~~~~~----lp~~l~~l~-~L~~L~l~~~~i~~~ 701 (1094)
. ++|++|++++|.++..+. . +.. .++|++|+|++|.+... ++..+..++ +|++|++++|.++..
T Consensus 103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 182 (362)
T 3goz_A 103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK 182 (362)
T ss_dssp HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchh
Confidence 3 677788887777775543 2 223 25777777777766532 233344444 777777777777644
Q ss_pred Cc-----cccCC-CCCcEEEccCCCCCC-----CCCCCCC-CCCCCEEeCCCCCCCCCC-----ccccCCCCCCeeecCC
Q 001348 702 PS-----SITNL-NELQVVWCSGCRGLI-----LPPSFSG-LSYLTELDLSCCNLIEIP-----QDIGCLSLLRSLDLRK 764 (1094)
Q Consensus 702 p~-----~l~~l-~~L~~L~l~~~~~~~-----lp~~l~~-l~~L~~L~Ls~n~l~~lp-----~~l~~l~~L~~L~L~~ 764 (1094)
.. .+..+ ++|+.|++++|.... ++..+.. .++|++|+|++|.+++.+ ..+..+++|+.|+|++
T Consensus 183 ~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~ 262 (362)
T 3goz_A 183 NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDY 262 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEH
T ss_pred hHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEecc
Confidence 32 33444 467777777776443 3333433 346777777777776532 2245566777777777
Q ss_pred CCCc--------ccchhhcCCCCCCEEEccCCCCCCC
Q 001348 765 NNFE--------YLPASMKHLSKLKSLDLSCCNMLQS 793 (1094)
Q Consensus 765 n~l~--------~lp~~l~~l~~L~~L~L~~~~~l~~ 793 (1094)
|.+. .++..+..+++|+.|+|++|++...
T Consensus 263 n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 263 DIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred CCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 7633 2333455666677777777765443
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.70 E-value=4.7e-17 Score=180.38 Aligned_cols=171 Identities=24% Similarity=0.313 Sum_probs=119.2
Q ss_pred cCCcccEEeccCCcccCccchhhcccCccceeeccCcccccccchhhccCCCcEEecCCCCCCCCCCccccCCCcccEEe
Q 001348 613 KLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEGTAITELPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLC 692 (1094)
Q Consensus 613 ~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~ 692 (1094)
.+++|+.|++++|.+.. ++ .+..+++|++|++++|.++.++. +..+++|++|++++|.+.+ +| .+..+++|+.|+
T Consensus 44 ~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~ 118 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS 118 (291)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred hcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEE
Confidence 45555555555554332 22 25555566666666666665555 5566666666666655433 22 366666666666
Q ss_pred cCCccCccCCccccCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeCCCCCCCCCCccccCCCCCCeeecCCCCCcccch
Q 001348 693 ANESAISQLPSSITNLNELQVVWCSGCRGLILPPSFSGLSYLTELDLSCCNLIEIPQDIGCLSLLRSLDLRKNNFEYLPA 772 (1094)
Q Consensus 693 l~~~~i~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~ 772 (1094)
+++|.++.+ +.+..+++|+.|++++|....+ ..+..+++|+.|+|++|.+++++. +..+++|+.|+|++|.++.+|.
T Consensus 119 L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~ 195 (291)
T 1h6t_A 119 LEHNGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA 195 (291)
T ss_dssp CTTSCCCCC-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG
T ss_pred CCCCcCCCC-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChh
Confidence 666666665 3566677777777777776655 457788899999999999998876 8889999999999999999874
Q ss_pred hhcCCCCCCEEEccCCCCCC
Q 001348 773 SMKHLSKLKSLDLSCCNMLQ 792 (1094)
Q Consensus 773 ~l~~l~~L~~L~L~~~~~l~ 792 (1094)
+..+++|+.|+|++|++..
T Consensus 196 -l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 196 -LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp -GTTCTTCSEEEEEEEEEEC
T ss_pred -hccCCCCCEEECcCCcccC
Confidence 8889999999999997654
No 102
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=6.2e-19 Score=212.99 Aligned_cols=203 Identities=19% Similarity=0.137 Sum_probs=133.5
Q ss_pred CccEEEeccCCCCccccccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceee-cc
Q 001348 569 NVRELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDID-LE 647 (1094)
Q Consensus 569 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~-L~ 647 (1094)
+|+.|+|++|.++.+|..+++|++|+.|++++|.....+|..+. .+...+..|..++++++|+.|+ ++
T Consensus 350 ~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~-----------~~~~~~~~~~~l~~l~~L~~L~~l~ 418 (567)
T 1dce_A 350 QLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMR-----------ALDPLLYEKETLQYFSTLKAVDPMR 418 (567)
T ss_dssp TSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----------HHCTGGGHHHHHHHHHHHHHHCGGG
T ss_pred cceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHH-----------hcccccCCHHHHHHHHhcccCcchh
Confidence 67788888888888888888888888888876642222221110 1112334455555555555555 44
Q ss_pred Ccccccccc------hhhc--cCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccCCccccCCCCCcEEEccCC
Q 001348 648 GTAITELPS------SIEY--LGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQLPSSITNLNELQVVWCSGC 719 (1094)
Q Consensus 648 ~~~i~~lp~------~l~~--l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~ 719 (1094)
.|.+..++. .+.. ...|+.|+|++|.+.+ +|. ++.+++|+.|++++|.++.+|..++.+++|+.|++++|
T Consensus 419 ~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N 496 (567)
T 1dce_A 419 AAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN 496 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS
T ss_pred hcccchhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC
Confidence 443333322 0111 1257888888876554 665 77788888888888888877777777777777777777
Q ss_pred CCCCCCCCCCCCCCCCEEeCCCCCCCCC--CccccCCCCCCeeecCCCCCcccchhh----cCCCCCCEEEc
Q 001348 720 RGLILPPSFSGLSYLTELDLSCCNLIEI--PQDIGCLSLLRSLDLRKNNFEYLPASM----KHLSKLKSLDL 785 (1094)
Q Consensus 720 ~~~~lp~~l~~l~~L~~L~Ls~n~l~~l--p~~l~~l~~L~~L~L~~n~l~~lp~~l----~~l~~L~~L~L 785 (1094)
....+| .++++++|+.|+|++|+++.+ |..++.+++|+.|+|++|.++.+|+.+ ..+|+|+.|++
T Consensus 497 ~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 497 ALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 766666 677777777777777777776 677777777777777777777665432 33677777754
No 103
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.70 E-value=5e-19 Score=217.43 Aligned_cols=226 Identities=13% Similarity=0.056 Sum_probs=133.3
Q ss_pred ccccccccccccee-ecccccccccchhhhhcCCcccEEeccCCcccCc-cchhhcccCccceeeccCcccc--cccchh
Q 001348 583 VPSSIDCLAKLEYL-DLGHCTILESISTSICKLKSLLKLCLDNCSKLES-FPEILEKMGCLEDIDLEGTAIT--ELPSSI 658 (1094)
Q Consensus 583 lp~~i~~L~~L~~L-~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~-~p~~l~~l~~L~~L~L~~~~i~--~lp~~l 658 (1094)
++..+.++++|+.| .+.+.. ...+|..+..+++|++|++++|..... ++..+.++++|++|++++| +. .++...
T Consensus 257 l~~~l~~~~~L~~Ls~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~ 334 (594)
T 2p1m_B 257 LSVALSGCKELRCLSGFWDAV-PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLA 334 (594)
T ss_dssp HHHHHHTCTTCCEEECCBTCC-GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHH
T ss_pred HHHHHhcCCCcccccCCcccc-hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHH
Confidence 33344555555555 232221 233455455678888888888874332 3344567788888888877 43 233334
Q ss_pred hccCCCcEEecCCC--------CCCC-CCCcc-ccCCCcccEEecCCccCccC-Cccc-cCCCCCcEEEcc--C---CC-
Q 001348 659 EYLGGLTTLNLTGC--------SKLD-NLPEN-LGNLKSLKMLCANESAISQL-PSSI-TNLNELQVVWCS--G---CR- 720 (1094)
Q Consensus 659 ~~l~~L~~L~L~~~--------~~~~-~lp~~-l~~l~~L~~L~l~~~~i~~~-p~~l-~~l~~L~~L~l~--~---~~- 720 (1094)
..+++|++|++.+| .... ..... ...+++|+.|.+..+.++.. +..+ ..+++|+.|+++ + |.
T Consensus 335 ~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~ 414 (594)
T 2p1m_B 335 STCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDY 414 (594)
T ss_dssp HHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCT
T ss_pred HhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccc
Confidence 46788888888442 2221 11111 22467888887777777632 2233 357888888888 2 22
Q ss_pred CCCCCC------CCCCCCCCCEEeCCCCCCCC-CCccccC-CCCCCeeecCCCCCcc--cchhhcCCCCCCEEEccCCCC
Q 001348 721 GLILPP------SFSGLSYLTELDLSCCNLIE-IPQDIGC-LSLLRSLDLRKNNFEY--LPASMKHLSKLKSLDLSCCNM 790 (1094)
Q Consensus 721 ~~~lp~------~l~~l~~L~~L~Ls~n~l~~-lp~~l~~-l~~L~~L~L~~n~l~~--lp~~l~~l~~L~~L~L~~~~~ 790 (1094)
....|. .+..+++|+.|+|++ ++++ .+..+.. +++|+.|+|++|.++. ++.....+++|+.|+|++|++
T Consensus 415 l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 415 LTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp TTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred ccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 222221 145678888888876 5553 2223333 7888899998888862 222226688899999998887
Q ss_pred CCCCC----cccccccccccccccc
Q 001348 791 LQSLP----ELPLQLKFLQAKDCKQ 811 (1094)
Q Consensus 791 l~~lp----~~~~~L~~L~~~~c~~ 811 (1094)
....+ ..+++|+.|++.+|+.
T Consensus 494 ~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 494 GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 43221 2346777777777743
No 104
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.69 E-value=3.4e-19 Score=218.98 Aligned_cols=316 Identities=16% Similarity=0.165 Sum_probs=199.7
Q ss_pred CCCCceEEEEeCCC-CCCccccccccccCCccccCcccccEEEecCCCCCCC-----CCCC-Cccccceeeccccc--cc
Q 001348 455 NMPNLRFLKFYMPK-LFGISDMVCKLHLPQGLQYLSDELRYLHWHGYPLKML-----PSNF-TPENLIELNLLYSR--IE 525 (1094)
Q Consensus 455 ~l~~Lr~L~l~~n~-l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~l-----p~~~-~~~~L~~L~L~~n~--i~ 525 (1094)
.+++|+.|++++|. +.. ..++.-...+ ++|++|++++|.++.. +... .+.+|++|+++++. +.
T Consensus 128 ~~~~L~~L~L~~~~~~~~-------~~l~~~~~~~-~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~ 199 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFST-------DGLAAIAATC-RNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVS 199 (594)
T ss_dssp HCTTCCEEEEESCEEEEH-------HHHHHHHHHC-TTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCC
T ss_pred hCCCCcEEeCCCcCCCCH-------HHHHHHHHhC-CCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCC
Confidence 46777788777662 211 1122222233 3677788777765432 2111 35577777777775 21
Q ss_pred --cccccCCCCCcCcccCCCCCCCCCeEEeccCCCCCcccCCccC---CccEEEecc-----------------------
Q 001348 526 --QLWKGKKGCKSLRCFPNNIHFRSPISLNFSYCVNFKEFPQISG---NVRELYLRG----------------------- 577 (1094)
Q Consensus 526 --~l~~~~~~l~~L~~~~~~~~~~~l~~L~Ls~~~~l~~~p~~~~---~L~~L~L~~----------------------- 577 (1094)
.+......+++|+ .|++++|..+..++.... +|+.|++.+
T Consensus 200 ~~~l~~l~~~~~~L~------------~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L 267 (594)
T 2p1m_B 200 FSALERLVTRCPNLK------------SLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKEL 267 (594)
T ss_dssp HHHHHHHHHHCTTCC------------EEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHhCCCCc------------EEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCc
Confidence 1111122345555 777777754444433222 555555332
Q ss_pred --------CCCCccccccccccccceeecccccccccc-hhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccC
Q 001348 578 --------TPIEYVPSSIDCLAKLEYLDLGHCTILESI-STSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEG 648 (1094)
Q Consensus 578 --------~~l~~lp~~i~~L~~L~~L~L~~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~ 648 (1094)
.....+|..+..+++|++|+|++|.+.... +..+.++++|++|++++|.....++.....+++|++|++.+
T Consensus 268 ~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~ 347 (594)
T 2p1m_B 268 RCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFP 347 (594)
T ss_dssp CEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEec
Confidence 222345555567899999999999855432 33356799999999999833233455556789999999833
Q ss_pred ---------cccc--cccchhhccCCCcEEecCCCCCCCCCCcccc-CCCcccEEecC--C----ccCccCCc------c
Q 001348 649 ---------TAIT--ELPSSIEYLGGLTTLNLTGCSKLDNLPENLG-NLKSLKMLCAN--E----SAISQLPS------S 704 (1094)
Q Consensus 649 ---------~~i~--~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~-~l~~L~~L~l~--~----~~i~~~p~------~ 704 (1094)
+.++ .+......+++|+.|.+..+.+....+..+. .+++|+.|+++ + +.++..|. .
T Consensus 348 ~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l 427 (594)
T 2p1m_B 348 SEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAI 427 (594)
T ss_dssp SCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHH
T ss_pred CcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHH
Confidence 4454 2222234589999998877666554444444 58899999998 4 55664432 2
Q ss_pred ccCCCCCcEEEccCCCCCCCCCCCCC-CCCCCEEeCCCCCCCC--CCccccCCCCCCeeecCCCCCcc--cchhhcCCCC
Q 001348 705 ITNLNELQVVWCSGCRGLILPPSFSG-LSYLTELDLSCCNLIE--IPQDIGCLSLLRSLDLRKNNFEY--LPASMKHLSK 779 (1094)
Q Consensus 705 l~~l~~L~~L~l~~~~~~~lp~~l~~-l~~L~~L~Ls~n~l~~--lp~~l~~l~~L~~L~L~~n~l~~--lp~~l~~l~~ 779 (1094)
+..+++|+.|+++++-....+..+.. +++|+.|+|++|.+++ ++.....+++|+.|+|++|.++. +...+..+++
T Consensus 428 ~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~ 507 (594)
T 2p1m_B 428 VEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET 507 (594)
T ss_dssp HHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGG
T ss_pred HhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCC
Confidence 56789999999977322222222333 7899999999999875 22223668999999999999973 3334567899
Q ss_pred CCEEEccCCCC
Q 001348 780 LKSLDLSCCNM 790 (1094)
Q Consensus 780 L~~L~L~~~~~ 790 (1094)
|+.|+|++|+.
T Consensus 508 L~~L~l~~~~~ 518 (594)
T 2p1m_B 508 MRSLWMSSCSV 518 (594)
T ss_dssp SSEEEEESSCC
T ss_pred CCEEeeeCCCC
Confidence 99999999987
No 105
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.69 E-value=4.9e-18 Score=194.79 Aligned_cols=242 Identities=15% Similarity=0.069 Sum_probs=181.9
Q ss_pred EEEeccCCCCcc-ccccccccccceeecccccccccch----hhhhcCC-cccEEeccCCcccCccchhhccc-----Cc
Q 001348 572 ELYLRGTPIEYV-PSSIDCLAKLEYLDLGHCTILESIS----TSICKLK-SLLKLCLDNCSKLESFPEILEKM-----GC 640 (1094)
Q Consensus 572 ~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~~~~lp----~~i~~l~-~L~~L~L~~~~~~~~~p~~l~~l-----~~ 640 (1094)
++.|+.|++... |..+...++|++|+|++|.+....+ ..+.+++ +|++|+|++|.+....+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 456778888854 5555556669999999999877666 6777888 99999999999888777777775 99
Q ss_pred cceeeccCcccccccc-h----hhcc-CCCcEEecCCCCCCCCCCcc----ccC-CCcccEEecCCccCc-----cCCcc
Q 001348 641 LEDIDLEGTAITELPS-S----IEYL-GGLTTLNLTGCSKLDNLPEN----LGN-LKSLKMLCANESAIS-----QLPSS 704 (1094)
Q Consensus 641 L~~L~L~~~~i~~lp~-~----l~~l-~~L~~L~L~~~~~~~~lp~~----l~~-l~~L~~L~l~~~~i~-----~~p~~ 704 (1094)
|++|+|++|.++..+. . +..+ ++|++|++++|.+....+.. +.. .++|++|++++|.++ .++..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 9999999999985543 2 4455 89999999999876655544 344 369999999999988 34455
Q ss_pred ccCCC-CCcEEEccCCCCCCCCC-----CCCCC-CCCCEEeCCCCCCCC-----CCccccC-CCCCCeeecCCCCCcccc
Q 001348 705 ITNLN-ELQVVWCSGCRGLILPP-----SFSGL-SYLTELDLSCCNLIE-----IPQDIGC-LSLLRSLDLRKNNFEYLP 771 (1094)
Q Consensus 705 l~~l~-~L~~L~l~~~~~~~lp~-----~l~~l-~~L~~L~Ls~n~l~~-----lp~~l~~-l~~L~~L~L~~n~l~~lp 771 (1094)
+..++ +|+.|++++|....... .+..+ ++|++|+|++|.+.+ ++..+.. .++|+.|+|++|.++..+
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 56665 99999999998654432 34455 599999999999987 6666665 459999999999998654
Q ss_pred -----hhhcCCCCCCEEEccCCCCCCC-------CCcccccccccccccccccc
Q 001348 772 -----ASMKHLSKLKSLDLSCCNMLQS-------LPELPLQLKFLQAKDCKQLQ 813 (1094)
Q Consensus 772 -----~~l~~l~~L~~L~L~~~~~l~~-------lp~~~~~L~~L~~~~c~~l~ 813 (1094)
..+..+++|+.|+|++|.+... ++..++.++.|...++..+.
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 3457789999999999973322 22344455555555555554
No 106
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.68 E-value=5.1e-16 Score=168.18 Aligned_cols=156 Identities=26% Similarity=0.339 Sum_probs=109.6
Q ss_pred ccceeeccCcccccccc-hhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccCC-ccccCCCCCcEEEcc
Q 001348 640 CLEDIDLEGTAITELPS-SIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQLP-SSITNLNELQVVWCS 717 (1094)
Q Consensus 640 ~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p-~~l~~l~~L~~L~l~ 717 (1094)
+|+.|++++|.++.++. .+..+++|++|+|++|.+.+..|..+.++++|+.|++++|.++.+| ..+..+++|+.|+++
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 115 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence 44445555554444332 3445555555555555554444445555666666666666666554 335666667777777
Q ss_pred CCCCCCCCCC-CCCCCCCCEEeCCCCCCCCCCc-cccCCCCCCeeecCCCCCcccch-hhcCCCCCCEEEccCCCCCCCC
Q 001348 718 GCRGLILPPS-FSGLSYLTELDLSCCNLIEIPQ-DIGCLSLLRSLDLRKNNFEYLPA-SMKHLSKLKSLDLSCCNMLQSL 794 (1094)
Q Consensus 718 ~~~~~~lp~~-l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~~~~l~~l 794 (1094)
+|....+|.. +..+++|++|+|++|+++.+|. .++.+++|+.|+|++|+++.+|. .+..+++|+.|+|++|++....
T Consensus 116 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~ 195 (251)
T 3m19_A 116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSR 195 (251)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTS
T ss_pred CCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCc
Confidence 7666655554 6789999999999999999887 58899999999999999998876 6788999999999999987653
Q ss_pred C
Q 001348 795 P 795 (1094)
Q Consensus 795 p 795 (1094)
+
T Consensus 196 ~ 196 (251)
T 3m19_A 196 C 196 (251)
T ss_dssp T
T ss_pred c
Confidence 3
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.68 E-value=1e-16 Score=177.68 Aligned_cols=190 Identities=20% Similarity=0.250 Sum_probs=138.7
Q ss_pred EEEeccCCCCccccccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccCccc
Q 001348 572 ELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEGTAI 651 (1094)
Q Consensus 572 ~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i 651 (1094)
.+.+..+.+..+. .+..+++|++|++++|.+.. +|. +..+++|++|++++|.+.+..+ +.++++|++|++++|.+
T Consensus 28 ~~~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~-~~~-~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 28 KDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKS-VQG-IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV 102 (291)
T ss_dssp HHHTTCSCTTSEE-CHHHHHTCCEEECTTSCCCC-CTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred HHHhcCCCccccc-chhhcCcccEEEccCCCccc-Chh-HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC
Confidence 3344444444432 23556677777777766533 333 6667777777777766554433 67777777777777777
Q ss_pred ccccchhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccCCccccCCCCCcEEEccCCCCCCCCCCCCCC
Q 001348 652 TELPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQLPSSITNLNELQVVWCSGCRGLILPPSFSGL 731 (1094)
Q Consensus 652 ~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l 731 (1094)
+.+|. +..+++|++|++++|.+.+ + ..+..+++|+.|++++|.++.+ ..+..+++|+.|++++|....+++ +..+
T Consensus 103 ~~~~~-l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l 177 (291)
T 1h6t_A 103 KDLSS-LKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGL 177 (291)
T ss_dssp CCGGG-GTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTC
T ss_pred CCChh-hccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCC
Confidence 77654 7777777788877776554 3 4577778888888888888777 567888888888888888777766 8889
Q ss_pred CCCCEEeCCCCCCCCCCccccCCCCCCeeecCCCCCcccch
Q 001348 732 SYLTELDLSCCNLIEIPQDIGCLSLLRSLDLRKNNFEYLPA 772 (1094)
Q Consensus 732 ~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~ 772 (1094)
++|+.|+|++|.++++|. +..+++|+.|++++|.++..|.
T Consensus 178 ~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 178 TKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp TTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEECCCE
T ss_pred CccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccCCcc
Confidence 999999999999999874 8899999999999999887663
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.67 E-value=2e-16 Score=192.12 Aligned_cols=189 Identities=23% Similarity=0.288 Sum_probs=101.3
Q ss_pred ccEEEeccCCCCccccccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccCc
Q 001348 570 VRELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEGT 649 (1094)
Q Consensus 570 L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~ 649 (1094)
+..+.+..+.+..+. .+..|++|+.|++++|.+. .+| .+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|
T Consensus 23 l~~l~l~~~~i~~~~-~~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN 97 (605)
T ss_dssp HHHHHTTCSCTTSEE-CHHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred HHHHhccCCCccccc-chhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC
Confidence 333444444444432 2344555555555555432 233 24455555555555554433322 445555555555555
Q ss_pred ccccccchhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccCCccccCCCCCcEEEccCCCCCCCCCCCC
Q 001348 650 AITELPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQLPSSITNLNELQVVWCSGCRGLILPPSFS 729 (1094)
Q Consensus 650 ~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~ 729 (1094)
.++.+| .+..+++|+.|++++|.+..+ +.+..+++|+.|+|++|....+ ..+.
T Consensus 98 ~l~~l~-------------------------~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~ 150 (605)
T 1m9s_A 98 KIKDLS-------------------------SLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI-TVLS 150 (605)
T ss_dssp CCCCCT-------------------------TSTTCTTCCEEECTTSCCCCC-GGGGGCTTCSEEECCSSCCCCC-GGGG
T ss_pred CCCCCh-------------------------hhccCCCCCEEEecCCCCCCC-ccccCCCccCEEECCCCccCCc-hhhc
Confidence 554443 344445555555555555443 2345555555555555554444 3455
Q ss_pred CCCCCCEEeCCCCCCCCCCccccCCCCCCeeecCCCCCcccchhhcCCCCCCEEEccCCCCCC
Q 001348 730 GLSYLTELDLSCCNLIEIPQDIGCLSLLRSLDLRKNNFEYLPASMKHLSKLKSLDLSCCNMLQ 792 (1094)
Q Consensus 730 ~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~~~~l~ 792 (1094)
.+++|+.|+|++|.+..++. +..+++|+.|+|++|+|+.+| .+..+++|+.|+|++|++..
T Consensus 151 ~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 151 RLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp SCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEEC
T ss_pred ccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcC
Confidence 66666666666666666544 666667777777777666665 46666777777777666544
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.65 E-value=4.9e-16 Score=188.80 Aligned_cols=170 Identities=23% Similarity=0.297 Sum_probs=126.7
Q ss_pred CccEEEeccCCCCccccccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccC
Q 001348 569 NVRELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEG 648 (1094)
Q Consensus 569 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~ 648 (1094)
+|+.|+|+++.+..+| .+..+++|+.|+|++|.+.+..| +.++++|+.|+|++|.+.. +| .+..+++|+.|+|++
T Consensus 44 ~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~ 118 (605)
T 1m9s_A 44 SIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEH 118 (605)
T ss_dssp TCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTT
T ss_pred CCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecC
Confidence 8999999999999997 58999999999999999876544 8899999999999997654 44 688999999999999
Q ss_pred cccccccchhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccCCccccCCCCCcEEEccCCCCCCCCCCC
Q 001348 649 TAITELPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQLPSSITNLNELQVVWCSGCRGLILPPSF 728 (1094)
Q Consensus 649 ~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l 728 (1094)
|.++.++ .+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+..+++ +.
T Consensus 119 N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~---------------------- 172 (605)
T 1m9s_A 119 NGISDIN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LA---------------------- 172 (605)
T ss_dssp SCCCCCG-GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GT----------------------
T ss_pred CCCCCCc-cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hc----------------------
Confidence 9998875 478888888888888766543 456666666666666666665543 44
Q ss_pred CCCCCCCEEeCCCCCCCCCCccccCCCCCCeeecCCCCCcccc
Q 001348 729 SGLSYLTELDLSCCNLIEIPQDIGCLSLLRSLDLRKNNFEYLP 771 (1094)
Q Consensus 729 ~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp 771 (1094)
.+++|+.|+|++|.++.+| .+..+++|+.|+|++|.+...|
T Consensus 173 -~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 173 -GLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp -TCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEECCC
T ss_pred -cCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcCCc
Confidence 4455555555555555543 3555556666666665555443
No 110
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.62 E-value=2.5e-17 Score=198.92 Aligned_cols=194 Identities=17% Similarity=0.168 Sum_probs=151.8
Q ss_pred ccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccCcccccccchhhccCCCcEE
Q 001348 588 DCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEGTAITELPSSIEYLGGLTTL 667 (1094)
Q Consensus 588 ~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L 667 (1094)
..+++|+.|+|++|.+ +.+|..++++++|+.|++++|.....+|..+.. + +....+|..++.+++|+.|
T Consensus 346 ~~~~~L~~L~Ls~n~L-~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~------~----~~~~~~~~~l~~l~~L~~L 414 (567)
T 1dce_A 346 ATDEQLFRCELSVEKS-TVLQSELESCKELQELEPENKWCLLTIILLMRA------L----DPLLYEKETLQYFSTLKAV 414 (567)
T ss_dssp STTTTSSSCCCCHHHH-HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------H----CTGGGHHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhH-HhhHHHHHHHHHHHHhccccchhhhhHHHHHHh------c----ccccCCHHHHHHHHhcccC
Confidence 5678999999999986 578999999999999999776544334432221 1 1233567778888888888
Q ss_pred e-cCCCCCCCCCCc------cccC--CCcccEEecCCccCccCCccccCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEe
Q 001348 668 N-LTGCSKLDNLPE------NLGN--LKSLKMLCANESAISQLPSSITNLNELQVVWCSGCRGLILPPSFSGLSYLTELD 738 (1094)
Q Consensus 668 ~-L~~~~~~~~lp~------~l~~--l~~L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~ 738 (1094)
+ ++.|.. ..++. .+.. ...|+.|++++|.++.+|. ++.+++|+.|++++|....+|..++++++|+.|+
T Consensus 415 ~~l~~n~~-~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~ 492 (567)
T 1dce_A 415 DPMRAAYL-DDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQ 492 (567)
T ss_dssp CGGGHHHH-HHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEE
T ss_pred cchhhccc-chhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEE
Confidence 8 444321 11111 0111 1258899999999999987 9999999999999999889999999999999999
Q ss_pred CCCCCCCCCCccccCCCCCCeeecCCCCCccc--chhhcCCCCCCEEEccCCCCCCCCC
Q 001348 739 LSCCNLIEIPQDIGCLSLLRSLDLRKNNFEYL--PASMKHLSKLKSLDLSCCNMLQSLP 795 (1094)
Q Consensus 739 Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l--p~~l~~l~~L~~L~L~~~~~l~~lp 795 (1094)
|++|.++.+| .++.+++|+.|+|++|+++.+ |..+..+++|+.|+|++|++.+..|
T Consensus 493 Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 493 ASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 9999999988 889999999999999999988 8889999999999999998776655
No 111
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.62 E-value=1.5e-15 Score=159.31 Aligned_cols=179 Identities=20% Similarity=0.175 Sum_probs=114.3
Q ss_pred cEEEeccCCCCccccccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccCcc
Q 001348 571 RELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEGTA 650 (1094)
Q Consensus 571 ~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~ 650 (1094)
+.++.+++.++.+|..+ .++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+.++++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 46677777777777655 3578888888887765555556677777777777776655545556667777777777777
Q ss_pred cccccch-hhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccCCccccCCCCCcEEEccCCCCCCCCCCCC
Q 001348 651 ITELPSS-IEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQLPSSITNLNELQVVWCSGCRGLILPPSFS 729 (1094)
Q Consensus 651 i~~lp~~-l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~ 729 (1094)
++.+|.. +..+++|++|++++|.+.+..+..+..+++|+.|++++|.++.++.. .+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~----------------------~~~ 145 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDG----------------------VFD 145 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT----------------------TTT
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHH----------------------Hhc
Confidence 6666543 45566666666666554443333445555555555555555444322 255
Q ss_pred CCCCCCEEeCCCCCCCCCCccccCCCCCCeeecCCCCCc-ccchhhcCCCC
Q 001348 730 GLSYLTELDLSCCNLIEIPQDIGCLSLLRSLDLRKNNFE-YLPASMKHLSK 779 (1094)
Q Consensus 730 ~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~ 779 (1094)
.+++|+.|+|++|.+. +.+++|+.|+++.|+++ .+|.+++.++.
T Consensus 146 ~l~~L~~L~l~~N~~~------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 146 RLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TCTTCCEEECCSCCBC------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred cCCCccEEEecCCCee------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 6667777777777543 34567888888888777 77777766654
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.61 E-value=1.2e-15 Score=166.32 Aligned_cols=150 Identities=21% Similarity=0.284 Sum_probs=95.7
Q ss_pred cccCccceeeccCcccccccchhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccCCccccCCCCCcEEE
Q 001348 636 EKMGCLEDIDLEGTAITELPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQLPSSITNLNELQVVW 715 (1094)
Q Consensus 636 ~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p~~l~~l~~L~~L~ 715 (1094)
..+++|++|++++|.++.+| .+..+++|+.|++++|.+.+ +|. +.++++|+.|++++|.++.+|.... ++|+.|+
T Consensus 38 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~ 112 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLF 112 (263)
T ss_dssp HHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEE
T ss_pred hhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccCCcCcccc--CcccEEE
Confidence 33444444444444444444 34444444444444443332 222 4555555555555555555543222 6666666
Q ss_pred ccCCCCCCCCCCCCCCCCCCEEeCCCCCCCCCCccccCCCCCCeeecCCCCCcccchhhcCCCCCCEEEccCCCCCCC
Q 001348 716 CSGCRGLILPPSFSGLSYLTELDLSCCNLIEIPQDIGCLSLLRSLDLRKNNFEYLPASMKHLSKLKSLDLSCCNMLQS 793 (1094)
Q Consensus 716 l~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~ 793 (1094)
+++|....++ .+..+++|+.|+|++|++++++ .++.+++|+.|+|++|.++.+ ..+..+++|+.|+|++|++...
T Consensus 113 L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 113 LDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECC
T ss_pred ccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCC
Confidence 6666655554 4778888888888888888886 678888999999999998888 5688889999999999886554
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.58 E-value=3.7e-15 Score=154.89 Aligned_cols=148 Identities=20% Similarity=0.267 Sum_probs=82.0
Q ss_pred cCccceeeccCcccccccchhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCcc-CCccccCCCCCcEEEc
Q 001348 638 MGCLEDIDLEGTAITELPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQ-LPSSITNLNELQVVWC 716 (1094)
Q Consensus 638 l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~-~p~~l~~l~~L~~L~l 716 (1094)
+++|++|++++|.++.+| .+..+++|++|++++|.. .. +..+..+++|+.|++++|.++. .|..+..+++|+.|++
T Consensus 43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~-~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHA-TN-YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCC-SC-CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCC-Cc-chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 333444444444444444 344444444444444421 11 1234444455555555554443 3444555555555555
Q ss_pred cCCCCCC-CCCCCCCCCCCCEEeCCCCC-CCCCCccccCCCCCCeeecCCCCCcccchhhcCCCCCCEEEccCCCC
Q 001348 717 SGCRGLI-LPPSFSGLSYLTELDLSCCN-LIEIPQDIGCLSLLRSLDLRKNNFEYLPASMKHLSKLKSLDLSCCNM 790 (1094)
Q Consensus 717 ~~~~~~~-lp~~l~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~~~~ 790 (1094)
++|.... .|..+..+++|++|+|++|. ++++| .+..+++|+.|++++|.++.++ .+..+++|+.|++++|++
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC--
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCccc
Confidence 5554432 33445666777777777776 66665 5677777778888777777776 677778888888887764
No 114
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.58 E-value=1.1e-14 Score=152.78 Aligned_cols=156 Identities=21% Similarity=0.251 Sum_probs=81.0
Q ss_pred cceeeccCcccccccch-hhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccCCcc-ccCCCCCcEEEccC
Q 001348 641 LEDIDLEGTAITELPSS-IEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQLPSS-ITNLNELQVVWCSG 718 (1094)
Q Consensus 641 L~~L~L~~~~i~~lp~~-l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p~~-l~~l~~L~~L~l~~ 718 (1094)
|++|++++|.++.++.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.++.+|.. +..+++|+.|++++
T Consensus 30 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 109 (208)
T 2o6s_A 30 TTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT 109 (208)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCC
Confidence 34444444444433322 23444444444444433322223334444555555555544444332 34455555555555
Q ss_pred CCCCCCCCC-CCCCCCCCEEeCCCCCCCCCCcc-ccCCCCCCeeecCCCCCcccchhhcCCCCCCEEEccCCCCCCCCCc
Q 001348 719 CRGLILPPS-FSGLSYLTELDLSCCNLIEIPQD-IGCLSLLRSLDLRKNNFEYLPASMKHLSKLKSLDLSCCNMLQSLPE 796 (1094)
Q Consensus 719 ~~~~~lp~~-l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~ 796 (1094)
|....++.. +..+++|+.|+|++|.++.+|.. +..+++|+.|+|++|.+. ..+++|+.|+++.|.+.+.+|.
T Consensus 110 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 110 NQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC------CCTTTTHHHHHHHHHCTTTBBC
T ss_pred CcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee------cCCCCHHHHHHHHHhCCceeec
Confidence 544444432 45666777777777777666554 566677777777777443 3345666777777777776666
Q ss_pred cccccc
Q 001348 797 LPLQLK 802 (1094)
Q Consensus 797 ~~~~L~ 802 (1094)
.+..+.
T Consensus 184 ~~~~l~ 189 (208)
T 2o6s_A 184 SAGSVA 189 (208)
T ss_dssp TTSSBC
T ss_pred cCcccc
Confidence 554443
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.58 E-value=2e-14 Score=153.20 Aligned_cols=153 Identities=24% Similarity=0.300 Sum_probs=128.1
Q ss_pred cceeeccCcccccccchhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccCCc-cccCCCCCcEEEccCC
Q 001348 641 LEDIDLEGTAITELPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQLPS-SITNLNELQVVWCSGC 719 (1094)
Q Consensus 641 L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p~-~l~~l~~L~~L~l~~~ 719 (1094)
.+.++.+++.++.+|..+. ++|++|+|++|.+.+..|..+.++++|+.|++++|.++.+|. .+..+++|+.|++++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 4567777777777777554 788888888888877778888888888888888888888864 4678889999999988
Q ss_pred CCCCCCCC-CCCCCCCCEEeCCCCCCCCCCccccCCCCCCeeecCCCCCcccch-hhcCCCCCCEEEccCCCCCCCCC
Q 001348 720 RGLILPPS-FSGLSYLTELDLSCCNLIEIPQDIGCLSLLRSLDLRKNNFEYLPA-SMKHLSKLKSLDLSCCNMLQSLP 795 (1094)
Q Consensus 720 ~~~~lp~~-l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~~~~l~~lp 795 (1094)
....++.. +..+++|+.|+|++|+++.+|..+..+++|+.|+|++|+++.+|. .+..+++|+.|+|++|++....+
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 87777654 688999999999999999999999999999999999999998885 57889999999999998765543
No 116
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.58 E-value=4.6e-14 Score=160.72 Aligned_cols=287 Identities=14% Similarity=0.093 Sum_probs=171.1
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhc--cCCChHHH
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESE--KGGGLVHL 165 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~--~~~~~~~l 165 (1094)
+..+..|+||+.++++|.+.+..+ +++.|+|++|+|||||+++++++.. .+|+.. ..... .......+
T Consensus 8 ~~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~ 77 (350)
T 2qen_A 8 KTRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNERP-----GILIDC-RELYAERGHITREEL 77 (350)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHSS-----EEEEEH-HHHHHTTTCBCHHHH
T ss_pred CCChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHcC-----cEEEEe-ecccccccCCCHHHH
Confidence 556678999999999999988642 6899999999999999999998751 455543 22210 00123344
Q ss_pred HHHHHHhhhc----------------cCCcccCCCc---hHHHHHHhcC-CeEEEEEecCCChH--------h-HHHHhc
Q 001348 166 RDRLLSQILD----------------ESIRIETPYI---PHYIRERLQC-MKVFIVLDDVNKFR--------Q-LEYLAG 216 (1094)
Q Consensus 166 ~~~ll~~l~~----------------~~~~~~~~~~---~~~l~~~L~~-kr~LlVLDdv~~~~--------~-~~~l~~ 216 (1094)
.+.+...+.. ...+...... .+.+.+.... ++++|||||++... + +..+..
T Consensus 78 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~ 157 (350)
T 2qen_A 78 IKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAY 157 (350)
T ss_dssp HHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHH
Confidence 4444333221 0000000111 2233333332 48999999996643 2 232322
Q ss_pred CCCCCCCCceEEEEeCChhhhhh-----------cC-cCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHH
Q 001348 217 GLDRFGLGSRIIVTSRDKQVLEK-----------YG-VDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDY 284 (1094)
Q Consensus 217 ~~~~~~~gsrIiiTTR~~~v~~~-----------~~-~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~ 284 (1094)
.... .++.++|+|++...+... .+ ....+++.+|+.+|+.+++...+-...... -.+.+.++++.
T Consensus 158 ~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~--~~~~~~~i~~~ 234 (350)
T 2qen_A 158 AYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV--PENEIEEAVEL 234 (350)
T ss_dssp HHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC--CHHHHHHHHHH
T ss_pred HHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHH
Confidence 1111 247889999987654221 11 135899999999999999987542111111 13467899999
Q ss_pred hCCCchHHHHHhhhhcC-CCHHHHHHHHHHhhcCCCccHHHHHHHhhhcc---cHHhhhhhcccccccCCcCHHHHHHHH
Q 001348 285 ARGNPLAIKVLASFFHR-KSKLDWEIALQNLKQISGPEILAVLKISYDEL---NWEAKNLFLDIACFFKGEDINFVTLIL 360 (1094)
Q Consensus 285 ~~GlPLal~~lg~~L~~-~~~~~w~~~l~~l~~~~~~~i~~~L~~sy~~L---~~~~k~~fl~~a~f~~~~~~~~~~~il 360 (1094)
++|+|+++..++..+.. .+...+. ..+. ..+...+.-.+..+ ++..+.++..+|+ .......+...+
T Consensus 235 tgG~P~~l~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~~~~~~l~~~~ 305 (350)
T 2qen_A 235 LDGIPGWLVVFGVEYLRNGDFGRAM---KRTL----EVAKGLIMGELEELRRRSPRYVDILRAIAL--GYNRWSLIRDYL 305 (350)
T ss_dssp HTTCHHHHHHHHHHHHHHCCHHHHH---HHHH----HHHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TCCSHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHhccccHhHHH---HHHH----HHHHHHHHHHHHHHHhCChhHHHHHHHHHh--CCCCHHHHHHHH
Confidence 99999999999876432 2322221 1111 11112222223333 7889999999998 234444544443
Q ss_pred hC---CC---ccccchhhhhccCceeEeCCEEEe-eHHHHHHH
Q 001348 361 DN---HY---SVHYGLSVLVDKSLVRISRNKLEM-HDLLQDMG 396 (1094)
Q Consensus 361 ~~---~~---~~~~~l~~L~~~sLi~~~~~~~~m-Hdli~~~~ 396 (1094)
.. +. .....++.|.+.++|...++.|.+ |.+++++.
T Consensus 306 ~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~y~~~~p~~~~~~ 348 (350)
T 2qen_A 306 AVKGTKIPEPRLYALLENLKKMNWIVEEDNTYKIADPVVATVL 348 (350)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEESSHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHhCCCEEecCCEEEEecHHHHHHH
Confidence 21 11 234568899999999987777765 66776654
No 117
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.57 E-value=9.1e-15 Score=151.94 Aligned_cols=147 Identities=14% Similarity=0.196 Sum_probs=104.4
Q ss_pred CccEEEeccCCCCccccccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccC
Q 001348 569 NVRELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEG 648 (1094)
Q Consensus 569 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~ 648 (1094)
+|++|+++++.+..+| .+..+++|++|++++|.+ ..++ .+..+++|++|++++|.+.+..|..+..+++|++|++++
T Consensus 45 ~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~-~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 121 (197)
T 4ezg_A 45 SLTYITLANINVTDLT-GIEYAHNIKDLTINNIHA-TNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121 (197)
T ss_dssp TCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCC-SCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred CccEEeccCCCccChH-HHhcCCCCCEEEccCCCC-Ccch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence 6788888888888877 678888888888888844 3333 577788888888888877776777777888888888888
Q ss_pred ccccc-ccchhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccCCccccCCCCCcEEEccCCC
Q 001348 649 TAITE-LPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQLPSSITNLNELQVVWCSGCR 720 (1094)
Q Consensus 649 ~~i~~-lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~ 720 (1094)
|.++. .|..++.+++|++|++++|...+.+| .+..+++|+.|++++|.++.++ .+..+++|+.|++++|.
T Consensus 122 n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 122 SAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp SBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred CccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence 87774 56667777777777777776555555 5666777777777777666654 44555555555555444
No 118
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.57 E-value=2.8e-14 Score=162.97 Aligned_cols=287 Identities=16% Similarity=0.097 Sum_probs=168.6
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhh-ccCCChHHHH
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREES-EKGGGLVHLR 166 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~-~~~~~~~~l~ 166 (1094)
+..++.|+||+.++++|.+ +.. ++|.|+|++|+|||||+++++++.... .+|+.. .... ..........
T Consensus 9 ~~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~ 78 (357)
T 2fna_A 9 KDNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNLP---YIYLDL-RKFEERNYISYKDFL 78 (357)
T ss_dssp CCSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEEG-GGGTTCSCCCHHHHH
T ss_pred CCCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEEc-hhhccccCCCHHHHH
Confidence 4566789999999999999 753 599999999999999999999876532 455543 2210 0001112222
Q ss_pred HHHHHhhh-------------ccC-------Cccc------CCCchHHHHHHhcC---CeEEEEEecCCChH-----hHH
Q 001348 167 DRLLSQIL-------------DES-------IRIE------TPYIPHYIRERLQC---MKVFIVLDDVNKFR-----QLE 212 (1094)
Q Consensus 167 ~~ll~~l~-------------~~~-------~~~~------~~~~~~~l~~~L~~---kr~LlVLDdv~~~~-----~~~ 212 (1094)
..+...+. ..- .... .......+.+.+.. ++++|||||++... ++.
T Consensus 79 ~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~ 158 (357)
T 2fna_A 79 LELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLL 158 (357)
T ss_dssp HHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCH
T ss_pred HHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHH
Confidence 22222211 100 0000 01123334444432 48999999996532 222
Q ss_pred HHhcCCCCCCCCceEEEEeCChhhhhh----------c-Cc-CeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHH
Q 001348 213 YLAGGLDRFGLGSRIIVTSRDKQVLEK----------Y-GV-DHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGR 280 (1094)
Q Consensus 213 ~l~~~~~~~~~gsrIiiTTR~~~v~~~----------~-~~-~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~ 280 (1094)
.++.......++.++|+|+|....... . +. ...+++.+|+.+|+.+++...+-......+.. ..
T Consensus 159 ~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~----~~ 234 (357)
T 2fna_A 159 PALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY----EV 234 (357)
T ss_dssp HHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH----HH
T ss_pred HHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH----HH
Confidence 222111111246789999998754221 1 11 36899999999999999987542111122222 78
Q ss_pred HHHHhCCCchHHHHHhhhhcC-CCHHHHHHH-HHHhhcCCCccHHHHHH-Hhhh--cccHHhhhhhcccccccCCcCHHH
Q 001348 281 VVDYARGNPLAIKVLASFFHR-KSKLDWEIA-LQNLKQISGPEILAVLK-ISYD--ELNWEAKNLFLDIACFFKGEDINF 355 (1094)
Q Consensus 281 i~~~~~GlPLal~~lg~~L~~-~~~~~w~~~-l~~l~~~~~~~i~~~L~-~sy~--~L~~~~k~~fl~~a~f~~~~~~~~ 355 (1094)
+++.++|+|+++..++..+.. .+...|... .+... ..+...+. +.++ .|++..+.++..+|+ . . ....
T Consensus 235 i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-g-~-~~~~ 307 (357)
T 2fna_A 235 VYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK----KLILKEFENFLHGREIARKRYLNIMRTLSK-C-G-KWSD 307 (357)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH----HHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-C-B-CHHH
T ss_pred HHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHc-C-C-CHHH
Confidence 999999999999999877642 233333221 11110 01111121 1111 688999999999998 2 2 5555
Q ss_pred HHHHHhC--C--C---ccccchhhhhccCceeEeCCEEE-eeHHHHHH
Q 001348 356 VTLILDN--H--Y---SVHYGLSVLVDKSLVRISRNKLE-MHDLLQDM 395 (1094)
Q Consensus 356 ~~~il~~--~--~---~~~~~l~~L~~~sLi~~~~~~~~-mHdli~~~ 395 (1094)
+...+.. + . .....++.|.+.++|...++.|. .|+++++.
T Consensus 308 l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~~~y~f~~~~~~~~ 355 (357)
T 2fna_A 308 VKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEGEKYCPSEPLISLA 355 (357)
T ss_dssp HHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESSSCEEESSHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecCCEEEecCHHHHHh
Confidence 4433221 3 2 23456899999999988767776 47787765
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.56 E-value=5.8e-15 Score=160.84 Aligned_cols=172 Identities=19% Similarity=0.207 Sum_probs=112.6
Q ss_pred ccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccCcccccccchhhccCCCcEEec
Q 001348 590 LAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEGTAITELPSSIEYLGGLTTLNL 669 (1094)
Q Consensus 590 L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L 669 (1094)
+.++..++++++.+.. ++ .+..+++|++|++++|.+. .+| .+..+++|++|++++|.++.+|. +..+++|++|++
T Consensus 18 l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEEC
Confidence 4445555555554432 22 2445555555555555432 333 45556666666666666665555 666666666666
Q ss_pred CCCCCCCCCCccccCCCcccEEecCCccCccCCccccCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeCCCCCCCCCCc
Q 001348 670 TGCSKLDNLPENLGNLKSLKMLCANESAISQLPSSITNLNELQVVWCSGCRGLILPPSFSGLSYLTELDLSCCNLIEIPQ 749 (1094)
Q Consensus 670 ~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~ 749 (1094)
++|.+.+ +|... . ++|+.|++++|.++.++ .+..+++|+.|++++|....++ .+..+++|+.|+|++|.++++ .
T Consensus 93 ~~N~l~~-l~~~~-~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~ 166 (263)
T 1xeu_A 93 NRNRLKN-LNGIP-S-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-G 166 (263)
T ss_dssp CSSCCSC-CTTCC-C-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-T
T ss_pred CCCccCC-cCccc-c-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-H
Confidence 6655433 33222 2 67777777777777664 4777778888888887776665 577888999999999999888 6
Q ss_pred cccCCCCCCeeecCCCCCcccch
Q 001348 750 DIGCLSLLRSLDLRKNNFEYLPA 772 (1094)
Q Consensus 750 ~l~~l~~L~~L~L~~n~l~~lp~ 772 (1094)
.+..+++|+.|++++|.++..|.
T Consensus 167 ~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 167 GLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp TSTTCCCCCEEEEEEEEEECCCE
T ss_pred HhccCCCCCEEeCCCCcccCCcc
Confidence 68889999999999998887764
No 120
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.56 E-value=2e-14 Score=152.17 Aligned_cols=151 Identities=23% Similarity=0.286 Sum_probs=112.8
Q ss_pred cEEEeccCCCCccccccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccCcc
Q 001348 571 RELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEGTA 650 (1094)
Q Consensus 571 ~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~ 650 (1094)
+.+++++++++.+|..+. ++|+.|+|++|.+.+..+..+.++++|++|+|++|.+.+..|..+.++++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 567888888888887665 678888888888777666678888888888888888777778888888888888888888
Q ss_pred cccccch-hhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccCCccccCCCCCcEEEccCCCCCCCCCCCC
Q 001348 651 ITELPSS-IEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQLPSSITNLNELQVVWCSGCRGLILPPSFS 729 (1094)
Q Consensus 651 i~~lp~~-l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~ 729 (1094)
|+.+|.. +..+++|++|+|++|.+.+..|..+..+++|+.|++++|.++.++.. .+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----------------------~~~ 149 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG----------------------TFS 149 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT----------------------TTT
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHH----------------------HHh
Confidence 8887765 46777778887777777666666677777777777777766665432 245
Q ss_pred CCCCCCEEeCCCCCCC
Q 001348 730 GLSYLTELDLSCCNLI 745 (1094)
Q Consensus 730 ~l~~L~~L~Ls~n~l~ 745 (1094)
.+++|+.|+|++|.+.
T Consensus 150 ~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 150 PLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TCTTCCEEECCSSCEE
T ss_pred CCCCCCEEEeCCCCcC
Confidence 5566666666666553
No 121
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.56 E-value=8.6e-15 Score=167.54 Aligned_cols=129 Identities=19% Similarity=0.164 Sum_probs=78.0
Q ss_pred cEEEeccCCCCccccccccccccceeecccccccccchhhhh-cCCcccEEeccCCcccCccchhhcccCccceeeccCc
Q 001348 571 RELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILESISTSIC-KLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEGT 649 (1094)
Q Consensus 571 ~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~-~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~ 649 (1094)
+.+++++++++.+|..+. ..++.|+|++|.+.+..+..+. ++++|++|+|++|.+....+..+.++++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 567777777888877654 3577788887777665555555 6777777777777666555566677777777777777
Q ss_pred ccccccc-hhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccC
Q 001348 650 AITELPS-SIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQL 701 (1094)
Q Consensus 650 ~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~ 701 (1094)
.++.++. .+..+++|+.|+|++|.+....|..+.++++|+.|++++|.++.+
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l 151 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRF 151 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCee
Confidence 6666554 345555555555555544433333344444444444444443333
No 122
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.54 E-value=4.3e-14 Score=149.51 Aligned_cols=147 Identities=22% Similarity=0.317 Sum_probs=98.9
Q ss_pred eeeccCcccccccchhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccC-CccccCCCCCcEEEccCCCC
Q 001348 643 DIDLEGTAITELPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQL-PSSITNLNELQVVWCSGCRG 721 (1094)
Q Consensus 643 ~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~-p~~l~~l~~L~~L~l~~~~~ 721 (1094)
.++++++.++.+|..+. ++|+.|++++|.+....+..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|..
T Consensus 15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp EEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred EEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 44555555555554433 4555566655554444444556666666666666666655 55566666666666666666
Q ss_pred CCCCCC-CCCCCCCCEEeCCCCCCCCC-CccccCCCCCCeeecCCCCCcccch-hhcCCCCCCEEEccCCCCC
Q 001348 722 LILPPS-FSGLSYLTELDLSCCNLIEI-PQDIGCLSLLRSLDLRKNNFEYLPA-SMKHLSKLKSLDLSCCNML 791 (1094)
Q Consensus 722 ~~lp~~-l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~~~~l 791 (1094)
..+|.. +.++++|+.|+|++|.++.+ |..+..+++|+.|+|++|+++.++. .+..+++|+.|+|++|++.
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 666554 56788888888888888876 4457788888888888888887775 4777888888888888754
No 123
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.52 E-value=5.9e-14 Score=148.47 Aligned_cols=151 Identities=18% Similarity=0.180 Sum_probs=89.7
Q ss_pred cEEEeccCCCCccccccccccccceeecccccccccch-hhhhcCCcccEEeccCCcccCccchhhcccCccceeeccCc
Q 001348 571 RELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILESIS-TSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEGT 649 (1094)
Q Consensus 571 ~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~ 649 (1094)
+.++++++.++.+|..+. ..+++|+|++|.+.+..| ..+.++++|++|+|++|.+.+..+..+.++++|++|+|++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 467777777777776553 345677777777655433 33566666666666666655555555666666666666666
Q ss_pred ccccccch-hhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccCCccccCCCCCcEEEccCCCCCCCCCCC
Q 001348 650 AITELPSS-IEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQLPSSITNLNELQVVWCSGCRGLILPPSF 728 (1094)
Q Consensus 650 ~i~~lp~~-l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l 728 (1094)
.++.++.. +..+++|++|+|++|.+.+..|..+..+++|+.|++++|.++.++ |..+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----------------------~~~~ 149 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA----------------------PGAF 149 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC----------------------TTTT
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC----------------------HHHh
Confidence 66655443 555555555555555555444555555555555555555554441 3345
Q ss_pred CCCCCCCEEeCCCCCCC
Q 001348 729 SGLSYLTELDLSCCNLI 745 (1094)
Q Consensus 729 ~~l~~L~~L~Ls~n~l~ 745 (1094)
..+++|+.|+|++|.+.
T Consensus 150 ~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 150 DTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTCTTCCEEECCSCCEE
T ss_pred cCCCCCCEEEecCcCCc
Confidence 56666677777766654
No 124
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.52 E-value=5.8e-14 Score=148.55 Aligned_cols=148 Identities=15% Similarity=0.157 Sum_probs=125.3
Q ss_pred EEeccCCCCCcccCCccC-CccEEEeccCCCCcccc--ccccccccceeecccccccccchhhhhcCCcccEEeccCCcc
Q 001348 551 SLNFSYCVNFKEFPQISG-NVRELYLRGTPIEYVPS--SIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSK 627 (1094)
Q Consensus 551 ~L~Ls~~~~l~~~p~~~~-~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~ 627 (1094)
.++++++. ++.+|.... .+++|+|++|.++.++. .+..+++|++|+|++|.+.+..|..|.++++|++|+|++|.+
T Consensus 15 ~l~~s~n~-l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 93 (220)
T 2v70_A 15 TVDCSNQK-LNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL 93 (220)
T ss_dssp EEECCSSC-CSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EeEeCCCC-cccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCcc
Confidence 44554442 444554333 67899999999998843 478999999999999998887777899999999999999998
Q ss_pred cCccchhhcccCccceeeccCcccccc-cchhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCc
Q 001348 628 LESFPEILEKMGCLEDIDLEGTAITEL-PSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAIS 699 (1094)
Q Consensus 628 ~~~~p~~l~~l~~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~ 699 (1094)
.+..|..+.++++|++|+|++|.++.+ |..+..+++|++|+|++|.+.+..|..+..+++|+.|++++|.+.
T Consensus 94 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 94 ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 888888899999999999999999977 567899999999999999888888899999999999999999776
No 125
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.52 E-value=7e-14 Score=148.95 Aligned_cols=151 Identities=23% Similarity=0.181 Sum_probs=89.6
Q ss_pred ccEEEeccCCCCccccccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccCc
Q 001348 570 VRELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEGT 649 (1094)
Q Consensus 570 L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~ 649 (1094)
.+.++.+++.+..+|..+. ++|++|+|++|.+.+..|..+.++++|++|+|++|.+....+..+.++++|++|+|++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 4567777777777776554 66777777777766666666666666666666666554333344555566666666655
Q ss_pred ccccccchhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccCCccccCCCCCcEEEccCCCCCCCCC-CC
Q 001348 650 AITELPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQLPSSITNLNELQVVWCSGCRGLILPP-SF 728 (1094)
Q Consensus 650 ~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~~~~lp~-~l 728 (1094)
.++.+|.. .+..+++|+.|++++|.++.+|..+..+++|+.|++++|....++. .+
T Consensus 99 ~l~~l~~~-----------------------~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~ 155 (229)
T 3e6j_A 99 QLTVLPSA-----------------------VFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAF 155 (229)
T ss_dssp CCCCCCTT-----------------------TTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTT
T ss_pred cCCccChh-----------------------HhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHH
Confidence 55554432 3334444444444444444455555555555555555555444443 36
Q ss_pred CCCCCCCEEeCCCCCCC
Q 001348 729 SGLSYLTELDLSCCNLI 745 (1094)
Q Consensus 729 ~~l~~L~~L~Ls~n~l~ 745 (1094)
..+++|+.|+|++|.+.
T Consensus 156 ~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 156 DRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTCTTCCEEECTTSCBC
T ss_pred hCCCCCCEEEeeCCCcc
Confidence 66777777777777665
No 126
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.51 E-value=9.3e-14 Score=162.15 Aligned_cols=282 Identities=13% Similarity=0.005 Sum_probs=166.0
Q ss_pred CCCCeeehhHHHHHHHhcc-cc--CC--CCeEEEEE--EecCCCchhhHHHHHHHHHhccc-----cc-eEEeeechhhh
Q 001348 90 DFEGLIGLDARIERIKSLL-CI--GL--PNIQIMGI--WGMGGIGKTTIAGVLFNQISRKF-----ES-KCFMANVREES 156 (1094)
Q Consensus 90 ~~~~~vGr~~~~~~l~~~L-~~--~~--~~~~vv~I--~G~gGiGKTtLA~~v~~~~~~~F-----~~-~~~~~~~~~~~ 156 (1094)
.++.++||+.++++|.+.+ .. .. ...+.+.| +|++|+||||||++++++....+ .. .+|+.+..
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 96 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFN--- 96 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGG---
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCC---
Confidence 4478999999999999988 42 11 23456666 99999999999999999776532 32 34444221
Q ss_pred ccCCChHHHHHHHHHhhhccCCccc-CCCc-hHHHHHHhc--CCeEEEEEecCCCh--------HhHHHHhcCCCCC---
Q 001348 157 EKGGGLVHLRDRLLSQILDESIRIE-TPYI-PHYIRERLQ--CMKVFIVLDDVNKF--------RQLEYLAGGLDRF--- 221 (1094)
Q Consensus 157 ~~~~~~~~l~~~ll~~l~~~~~~~~-~~~~-~~~l~~~L~--~kr~LlVLDdv~~~--------~~~~~l~~~~~~~--- 221 (1094)
. .....+...++.++........ .... ...+.+.+. +++++|||||++.. +.+..+...+...
T Consensus 97 -~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~ 174 (412)
T 1w5s_A 97 -A-PNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSR 174 (412)
T ss_dssp -C-CSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCT
T ss_pred -C-CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccC
Confidence 1 4556777777777743221111 1111 445555554 67999999999653 3343333222111
Q ss_pred C--CCceEEEEeCChhhhhhc---------CcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhC----
Q 001348 222 G--LGSRIIVTSRDKQVLEKY---------GVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYAR---- 286 (1094)
Q Consensus 222 ~--~gsrIiiTTR~~~v~~~~---------~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~---- 286 (1094)
+ ....||+||++..+...+ .....+++++++.+++.++|...+........--.+....+++.++
T Consensus 175 ~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 254 (412)
T 1w5s_A 175 DGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKG 254 (412)
T ss_dssp TSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGT
T ss_pred CCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhcc
Confidence 2 344588888766533111 1223499999999999999976542111111112356778899999
Q ss_pred --CCchHHHHHhhhhc------C---CCHHHHHHHHHHhhcCCCccHHHHHHHhhhcccHHhhhhhcccccccC----Cc
Q 001348 287 --GNPLAIKVLASFFH------R---KSKLDWEIALQNLKQISGPEILAVLKISYDELNWEAKNLFLDIACFFK----GE 351 (1094)
Q Consensus 287 --GlPLal~~lg~~L~------~---~~~~~w~~~l~~l~~~~~~~i~~~L~~sy~~L~~~~k~~fl~~a~f~~----~~ 351 (1094)
|.|..+..++.... + -+.+.+..++..... ...+.-++..||+.++.++..+|.+.. ..
T Consensus 255 ~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~ 328 (412)
T 1w5s_A 255 GDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------ASIQTHELEALSIHELIILRLIAEATLGGMEWI 328 (412)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSB
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCc
Confidence 99976555543211 1 134444444433210 233445678899999999999997642 22
Q ss_pred CHHHH----HHHH-hC-CCc------cccchhhhhccCceeEe
Q 001348 352 DINFV----TLIL-DN-HYS------VHYGLSVLVDKSLVRIS 382 (1094)
Q Consensus 352 ~~~~~----~~il-~~-~~~------~~~~l~~L~~~sLi~~~ 382 (1094)
....+ ..+. .. +.. ....++.|.+.+||...
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 329 NAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp CHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 23221 1222 22 221 23458889999999875
No 127
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.50 E-value=5.6e-14 Score=160.78 Aligned_cols=172 Identities=19% Similarity=0.224 Sum_probs=106.3
Q ss_pred cEEEecCCCCCCCCCCCCccccceeeccccccccccccCC--CCCcCcccCCCCCCCCCeEEeccCCCCCcccCCccCCc
Q 001348 493 RYLHWHGYPLKMLPSNFTPENLIELNLLYSRIEQLWKGKK--GCKSLRCFPNNIHFRSPISLNFSYCVNFKEFPQISGNV 570 (1094)
Q Consensus 493 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~i~~l~~~~~--~l~~L~~~~~~~~~~~l~~L~Ls~~~~l~~~p~~~~~L 570 (1094)
+.++++++.++.+|..+ +..++.|+|++|+|+.++.... .++ +|
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~---------------------------------~L 66 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLT---------------------------------NL 66 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCEECTTSSSSCCT---------------------------------TC
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCCCCccChhhhhhccc---------------------------------cc
Confidence 56778888888887654 3457777777777765543211 111 55
Q ss_pred cEEEeccCCCCccc-cccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccCc
Q 001348 571 RELYLRGTPIEYVP-SSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEGT 649 (1094)
Q Consensus 571 ~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~ 649 (1094)
++|+|++|.|..++ ..+..+++|++|+|++|.+....+..|.++++|++|+|++|.+....|..+.++++|++|+|++|
T Consensus 67 ~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N 146 (361)
T 2xot_A 67 HSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN 146 (361)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC
Confidence 66666666777665 34677777777777777766555556677777777777777766666667777777777777777
Q ss_pred ccccccchh----hccCCCcEEecCCCCCCCCCCccccCCCc--ccEEecCCccC
Q 001348 650 AITELPSSI----EYLGGLTTLNLTGCSKLDNLPENLGNLKS--LKMLCANESAI 698 (1094)
Q Consensus 650 ~i~~lp~~l----~~l~~L~~L~L~~~~~~~~lp~~l~~l~~--L~~L~l~~~~i 698 (1094)
.|+.+|..+ ..+++|+.|+|++|.+....+..+..++. |+.|++++|.+
T Consensus 147 ~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 147 QISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred cCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCc
Confidence 777766553 45566666666665544333334444443 24455554443
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.47 E-value=1.7e-14 Score=179.66 Aligned_cols=191 Identities=20% Similarity=0.129 Sum_probs=113.7
Q ss_pred CCcccEEeccCCcccCccchhhcccCcccee-----eccCcccccccchhhccCCCcEEecCCCCCCCCCCccccCCCcc
Q 001348 614 LKSLLKLCLDNCSKLESFPEILEKMGCLEDI-----DLEGTAITELPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSL 688 (1094)
Q Consensus 614 l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L-----~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L 688 (1094)
.+.++.|+|.++.... .+..+.....|..+ ++..|.+...|..+..+++|+.|+|++|.+. .+|..+.++++|
T Consensus 172 ~~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 172 TPLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CCccceEEeeCCCCCc-chhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 3557788887766544 34333333333333 3334445555677888899999999988765 788888889999
Q ss_pred cEEecCCccCccCCccccCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeCCCCCCCCCCccccCCCCCCeeecCCCCCc
Q 001348 689 KMLCANESAISQLPSSITNLNELQVVWCSGCRGLILPPSFSGLSYLTELDLSCCNLIEIPQDIGCLSLLRSLDLRKNNFE 768 (1094)
Q Consensus 689 ~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~ 768 (1094)
+.|+|++|.++.+|..+.++++|+.|+|++|....+|..+.++++|++|+|++|.++.+|..++.+++|+.|+|++|.|+
T Consensus 250 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 250 TRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp SCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred CEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccC
Confidence 99999999999889889999999999999999888888888999999999999999889888889999999999999988
Q ss_pred -ccchhhcCCC-CCCEEEccCCCCCCCCCcccccccccccccc
Q 001348 769 -YLPASMKHLS-KLKSLDLSCCNMLQSLPELPLQLKFLQAKDC 809 (1094)
Q Consensus 769 -~lp~~l~~l~-~L~~L~L~~~~~l~~lp~~~~~L~~L~~~~c 809 (1094)
.+|..+..+. .+..|+|++|.+.+.+|.. |..|++...
T Consensus 330 ~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~---l~~l~l~~n 369 (727)
T 4b8c_D 330 KQFLKILTEKSVTGLIFYLRDNRPEIPLPHE---RRFIEINTD 369 (727)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC------------
T ss_pred CCChHHHhhcchhhhHHhhccCcccCcCccc---cceeEeecc
Confidence 4454443332 2234778888888877753 445554443
No 129
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.46 E-value=2.6e-12 Score=148.35 Aligned_cols=272 Identities=15% Similarity=0.092 Sum_probs=171.3
Q ss_pred CCeeehhHHHHHHHhcccc--CCCCeEEEEEEecCCCchhhHHHHHHHHHhccc-------cc-eEEeeechhhhccCC-
Q 001348 92 EGLIGLDARIERIKSLLCI--GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKF-------ES-KCFMANVREESEKGG- 160 (1094)
Q Consensus 92 ~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-------~~-~~~~~~~~~~~~~~~- 160 (1094)
+.++||+.+++++...+.. .....+.|.|+|++|+||||+|+++++.+...+ .. .+++.+ ... .
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~-~~~----~~ 94 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC-REV----GG 94 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH-HHH----CS
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC-ccC----CC
Confidence 6899999999999988754 234467899999999999999999999875442 22 334432 221 2
Q ss_pred ChHHHHHHHHHhhhccCCcccC--CCc-hHHHHHHhcCCeEEEEEecCCChHh-------HHHHhcCCCCCCCCceEEEE
Q 001348 161 GLVHLRDRLLSQILDESIRIET--PYI-PHYIRERLQCMKVFIVLDDVNKFRQ-------LEYLAGGLDRFGLGSRIIVT 230 (1094)
Q Consensus 161 ~~~~l~~~ll~~l~~~~~~~~~--~~~-~~~l~~~L~~kr~LlVLDdv~~~~~-------~~~l~~~~~~~~~gsrIiiT 230 (1094)
....+...++.++.+....... ... ...+.+.+..++.+|||||++.... +..+.... .+.+||+|
T Consensus 95 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~ 170 (384)
T 2qby_B 95 TPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMI 170 (384)
T ss_dssp CHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEE
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEE
Confidence 4566777777777543222111 112 5566777777777999999966432 33343332 67889999
Q ss_pred eCChhhh----hhc--CcCeEEEccCCCHHHHHHHHHhhcc---cCCCCCchHHHHHHHHHHHhC---CCch-HHHHHhh
Q 001348 231 SRDKQVL----EKY--GVDHIYEVEELNNIEALELFCKYAF---RQNHHPQDLMVISGRVVDYAR---GNPL-AIKVLAS 297 (1094)
Q Consensus 231 TR~~~v~----~~~--~~~~~~~l~~L~~~ea~~Lf~~~af---~~~~~~~~~~~~~~~i~~~~~---GlPL-al~~lg~ 297 (1094)
|+..... ... .....+++++++.++..+++...+. ......+ +..+.++++++ |.|. |+..+-.
T Consensus 171 t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~ 247 (384)
T 2qby_B 171 SNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFR 247 (384)
T ss_dssp CSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred ECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 9876321 111 1224899999999999999998753 2222222 34567777777 8887 3333322
Q ss_pred hh--c----CCCHHHHHHHHHHhhcCCCccHHHHHHHhhhcccHHhhhhhcccccccCCcCHH-HHHHHHhC-CCc----
Q 001348 298 FF--H----RKSKLDWEIALQNLKQISGPEILAVLKISYDELNWEAKNLFLDIACFFKGEDIN-FVTLILDN-HYS---- 365 (1094)
Q Consensus 298 ~L--~----~~~~~~w~~~l~~l~~~~~~~i~~~L~~sy~~L~~~~k~~fl~~a~f~~~~~~~-~~~~il~~-~~~---- 365 (1094)
.. . .-+.+.++.++.... ...+.-++..|++.+|..+..++....+.++. ....+... |..
T Consensus 248 a~~~a~~~~~i~~~~v~~~~~~~~-------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~ 320 (384)
T 2qby_B 248 AAQLASGGGIIRKEHVDKAIVDYE-------QERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSY 320 (384)
T ss_dssp HHHHTTSSSCCCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCH
T ss_pred HHHHhcCCCccCHHHHHHHHHHHh-------cchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCH
Confidence 22 1 226777887777653 24567778899999998888777611101222 22333332 311
Q ss_pred --cccchhhhhccCceeEe
Q 001348 366 --VHYGLSVLVDKSLVRIS 382 (1094)
Q Consensus 366 --~~~~l~~L~~~sLi~~~ 382 (1094)
....+..|.++++|...
T Consensus 321 ~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 321 RRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHhCCCEEEE
Confidence 23447788999999764
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.46 E-value=1.6e-14 Score=180.01 Aligned_cols=193 Identities=19% Similarity=0.135 Sum_probs=80.3
Q ss_pred CccEEEeccCCCCccccccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccC
Q 001348 569 NVRELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEG 648 (1094)
Q Consensus 569 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~ 648 (1094)
.++.|+|.++.+...|..+....+|..+.+... +++.|. ....|..+..+++|+.|+|++
T Consensus 174 ~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~-------------------~~~~n~-~~~~~~~~~~l~~L~~L~Ls~ 233 (727)
T 4b8c_D 174 LTPKIELFANGKDEANQALLQHKKLSQYSIDED-------------------DDIENR-MVMPKDSKYDDQLWHALDLSN 233 (727)
T ss_dssp --------------------------------------------------------------------CCCCCCEEECTT
T ss_pred ccceEEeeCCCCCcchhhHhhcCccCcccccCc-------------------cccccc-eecChhhhccCCCCcEEECCC
Confidence 577888888888776665533333333332221 111111 113344445555555555555
Q ss_pred cccccccchhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccCCccccCCCCCcEEEccCCCCCCCCCCC
Q 001348 649 TAITELPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQLPSSITNLNELQVVWCSGCRGLILPPSF 728 (1094)
Q Consensus 649 ~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l 728 (1094)
|.+..+|..+..+++|++|+|++|.+. .+|..+++|++|+.|+|++|.++.+|..++.+++|+.|+|++|....+|..+
T Consensus 234 n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~ 312 (727)
T 4b8c_D 234 LQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEF 312 (727)
T ss_dssp SCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSST
T ss_pred CCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhh
Confidence 555555555555555555555555444 5555555555556666666666666666666666666666666666666667
Q ss_pred CCCCCCCEEeCCCCCCCC-CCccccCCC-CCCeeecCCCCCc-ccchhhcCCCCCCEEEccCC
Q 001348 729 SGLSYLTELDLSCCNLIE-IPQDIGCLS-LLRSLDLRKNNFE-YLPASMKHLSKLKSLDLSCC 788 (1094)
Q Consensus 729 ~~l~~L~~L~Ls~n~l~~-lp~~l~~l~-~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~~ 788 (1094)
..+++|+.|+|++|.++. +|..+..+. .+..|+|++|.++ .+| ..|+.|++++|
T Consensus 313 ~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p------~~l~~l~l~~n 369 (727)
T 4b8c_D 313 GNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP------HERRFIEINTD 369 (727)
T ss_dssp TSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC------CC---------
T ss_pred hcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc------cccceeEeecc
Confidence 777778888888887775 344443322 1224667777776 333 35566666666
No 131
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.45 E-value=1.4e-13 Score=138.89 Aligned_cols=133 Identities=22% Similarity=0.308 Sum_probs=95.9
Q ss_pred CccEEEeccCCCC--ccccccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeec
Q 001348 569 NVRELYLRGTPIE--YVPSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDL 646 (1094)
Q Consensus 569 ~L~~L~L~~~~l~--~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L 646 (1094)
+|+.|+|++|.+. .+|..+..+++|++|++++|.+... ..+..+++|++|++++|.+.+.+|..+.++++|++|++
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 6778888888887 7787778888888888888876554 55777888888888888777767777777888888888
Q ss_pred cCccccccc--chhhccCCCcEEecCCCCCCCCCC---ccccCCCcccEEecCCccCccCCc
Q 001348 647 EGTAITELP--SSIEYLGGLTTLNLTGCSKLDNLP---ENLGNLKSLKMLCANESAISQLPS 703 (1094)
Q Consensus 647 ~~~~i~~lp--~~l~~l~~L~~L~L~~~~~~~~lp---~~l~~l~~L~~L~l~~~~i~~~p~ 703 (1094)
++|.++.+| ..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.++|.
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 888777765 566667777777777765544333 256666666666666666665554
No 132
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.43 E-value=1.7e-13 Score=138.39 Aligned_cols=136 Identities=21% Similarity=0.261 Sum_probs=68.0
Q ss_pred CcccEEeccCCccc-CccchhhcccCccceeeccCcccccccchhhccCCCcEEecCCCCCCCCCCccccCCCcccEEec
Q 001348 615 KSLLKLCLDNCSKL-ESFPEILEKMGCLEDIDLEGTAITELPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCA 693 (1094)
Q Consensus 615 ~~L~~L~L~~~~~~-~~~p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l 693 (1094)
++|++|++++|.+. +.+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.+.+.+|..+.++++|+.|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 44555555554443 34444444555555555555554444 33444455555555554444444444444444444444
Q ss_pred CCccCccCCccccCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeCCCCCCCCCCc----cccCCCCCCeeecCCCCCcc
Q 001348 694 NESAISQLPSSITNLNELQVVWCSGCRGLILPPSFSGLSYLTELDLSCCNLIEIPQ----DIGCLSLLRSLDLRKNNFEY 769 (1094)
Q Consensus 694 ~~~~i~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~----~l~~l~~L~~L~L~~n~l~~ 769 (1094)
++|.++.+|. +..+..+++|+.|++++|.++.+|. .+..+++|+.|++++|.+..
T Consensus 103 s~N~l~~~~~---------------------~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 103 SGNKLKDIST---------------------LEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp BSSSCCSSGG---------------------GGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred cCCccCcchh---------------------HHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 4444444321 0234445555555555555555554 45556666666666666665
Q ss_pred cch
Q 001348 770 LPA 772 (1094)
Q Consensus 770 lp~ 772 (1094)
+|.
T Consensus 162 ~~~ 164 (168)
T 2ell_A 162 APD 164 (168)
T ss_dssp CCS
T ss_pred ccc
Confidence 554
No 133
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.39 E-value=1.1e-11 Score=142.99 Aligned_cols=282 Identities=14% Similarity=0.074 Sum_probs=166.9
Q ss_pred CCCCCeeehhHHHHHHHhccccC--CCCeEEEEEEecCCCchhhHHHHHHHHHhcccc---ceEEeeechhhhccCCChH
Q 001348 89 SDFEGLIGLDARIERIKSLLCIG--LPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFE---SKCFMANVREESEKGGGLV 163 (1094)
Q Consensus 89 ~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~---~~~~~~~~~~~~~~~~~~~ 163 (1094)
..++.++||+.+++++.+.+... ....+.+.|+|++|+||||||+++++.+...+. ..+|+.+ ... ....
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~-~~~----~~~~ 91 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINT-RQI----DTPY 91 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEH-HHH----CSHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEC-CCC----CCHH
Confidence 34578999999999999998642 345678999999999999999999998766542 2334432 221 2344
Q ss_pred HHHHHHHHhhhccCCccc-CCCc-hHHHHHHhc--CCeEEEEEecCCCh------HhHHHHhcCCCC-CCCCceEEEEeC
Q 001348 164 HLRDRLLSQILDESIRIE-TPYI-PHYIRERLQ--CMKVFIVLDDVNKF------RQLEYLAGGLDR-FGLGSRIIVTSR 232 (1094)
Q Consensus 164 ~l~~~ll~~l~~~~~~~~-~~~~-~~~l~~~L~--~kr~LlVLDdv~~~------~~~~~l~~~~~~-~~~gsrIiiTTR 232 (1094)
.+...++.++........ .... ...+.+.+. +++.+||||+++.. +.+..+...... ...+..+|+||+
T Consensus 92 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~ 171 (386)
T 2qby_A 92 RVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITN 171 (386)
T ss_dssp HHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEES
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEEC
Confidence 556666555532111111 0111 334444454 45899999999543 334444332211 134567788888
Q ss_pred ChhhhhhcC-------cCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhC---CCchHHHHHhhhhc--
Q 001348 233 DKQVLEKYG-------VDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYAR---GNPLAIKVLASFFH-- 300 (1094)
Q Consensus 233 ~~~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~---GlPLal~~lg~~L~-- 300 (1094)
+......+. ....+++++++.++..+++...+........-..+..+.++++++ |.|..+..+.....
T Consensus 172 ~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~ 251 (386)
T 2qby_A 172 DVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEI 251 (386)
T ss_dssp CGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 764332211 125899999999999999988653111111122345566777777 99984433322211
Q ss_pred ----C---CCHHHHHHHHHHhhcCCCccHHHHHHHhhhcccHHhhhhhcccccccC-C---cCHHH----HHHHHhC-CC
Q 001348 301 ----R---KSKLDWEIALQNLKQISGPEILAVLKISYDELNWEAKNLFLDIACFFK-G---EDINF----VTLILDN-HY 364 (1094)
Q Consensus 301 ----~---~~~~~w~~~l~~l~~~~~~~i~~~L~~sy~~L~~~~k~~fl~~a~f~~-~---~~~~~----~~~il~~-~~ 364 (1094)
+ -+.+.++.++.... ...+.-++..+++.++..+..++.+.+ + +.... ...+... |.
T Consensus 252 a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~ 324 (386)
T 2qby_A 252 AERMKDTKVKEEYVYMAKEEIE-------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGV 324 (386)
T ss_dssp HHHTTCSSCCHHHHHHHHHHHH-------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTC
T ss_pred HHhcCCCccCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCC
Confidence 1 25566666665542 245667788899999998888886433 2 11221 1222222 22
Q ss_pred c------cccchhhhhccCceeEe
Q 001348 365 S------VHYGLSVLVDKSLVRIS 382 (1094)
Q Consensus 365 ~------~~~~l~~L~~~sLi~~~ 382 (1094)
. ....++.|.+.++|...
T Consensus 325 ~~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 325 EAVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp CCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCCHHHHHHHHHHHHhCCCEEEE
Confidence 2 23457788888988754
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.37 E-value=4.6e-13 Score=132.17 Aligned_cols=123 Identities=23% Similarity=0.232 Sum_probs=70.3
Q ss_pred CCcEEecCCCCCC-CCCCccccCCCcccEEecCCccCccCCccccCCCCCcEEEccCCCCCC-CCCCCCCCCCCCEEeCC
Q 001348 663 GLTTLNLTGCSKL-DNLPENLGNLKSLKMLCANESAISQLPSSITNLNELQVVWCSGCRGLI-LPPSFSGLSYLTELDLS 740 (1094)
Q Consensus 663 ~L~~L~L~~~~~~-~~lp~~l~~l~~L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~Ls 740 (1094)
+|+.|++++|.+. +.+|..+..+++|+.|++++|.++.+ ..+..+++|+.|++++|.... +|..+..+++|++|+++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence 3444444444433 34444444445555555555544444 344445555555555555443 34444456667777777
Q ss_pred CCCCCCCC--ccccCCCCCCeeecCCCCCcccch----hhcCCCCCCEEEcc
Q 001348 741 CCNLIEIP--QDIGCLSLLRSLDLRKNNFEYLPA----SMKHLSKLKSLDLS 786 (1094)
Q Consensus 741 ~n~l~~lp--~~l~~l~~L~~L~L~~n~l~~lp~----~l~~l~~L~~L~L~ 786 (1094)
+|.++.+| ..++.+++|+.|++++|.++.+|. .+..+++|+.|+++
T Consensus 97 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 97 GNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 77776654 556777777777777777776664 46667777777765
No 135
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.37 E-value=6.3e-13 Score=131.17 Aligned_cols=123 Identities=24% Similarity=0.306 Sum_probs=76.0
Q ss_pred CccEEEeccCCCC--ccccccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeec
Q 001348 569 NVRELYLRGTPIE--YVPSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDL 646 (1094)
Q Consensus 569 ~L~~L~L~~~~l~--~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L 646 (1094)
+|+.|++++|.+. .+|..+..+++|++|++++|.+.+. ..++++++|++|++++|.+.+.+|..+..+++|++|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 5667777777666 6666667777777777777765544 44666677777777776666656666666666666666
Q ss_pred cCccccccc--chhhccCCCcEEecCCCCCCCCCC---ccccCCCcccEEec
Q 001348 647 EGTAITELP--SSIEYLGGLTTLNLTGCSKLDNLP---ENLGNLKSLKMLCA 693 (1094)
Q Consensus 647 ~~~~i~~lp--~~l~~l~~L~~L~L~~~~~~~~lp---~~l~~l~~L~~L~l 693 (1094)
++|.++.+| ..++.+++|++|++++|.+.+..+ ..+..+++|+.|++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 666666554 555666666666666654433322 23444555555544
No 136
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.35 E-value=2.2e-12 Score=133.18 Aligned_cols=127 Identities=21% Similarity=0.218 Sum_probs=86.0
Q ss_pred cEEEeccCCCCccccccccccccceeecccccccccchh-hhhcCCcccEEeccCCcccCccchhhcccCccceeeccCc
Q 001348 571 RELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILESIST-SICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEGT 649 (1094)
Q Consensus 571 ~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~ 649 (1094)
++|++++++++++|..+.. +|++|+|++|.+.+..+. .++++++|++|+|++|.+.+..|..+.++++|++|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 5677777777777766543 677777777766554443 3667777777777777776666777777777777777777
Q ss_pred ccccccch-hhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCc
Q 001348 650 AITELPSS-IEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAIS 699 (1094)
Q Consensus 650 ~i~~lp~~-l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~ 699 (1094)
.++.++.. +..+++|++|+|++|.+.+..|..+..+++|+.|++++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 77765543 666677777777776666666666666666666666666554
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.30 E-value=2.9e-12 Score=130.34 Aligned_cols=102 Identities=19% Similarity=0.245 Sum_probs=62.6
Q ss_pred cccEEecCCccCccCCccccCCCCCcEEEccCCCCCCCCCCC-CCCCCCCEEeCCCCCCCCCCc--cccCCCCCCeeecC
Q 001348 687 SLKMLCANESAISQLPSSITNLNELQVVWCSGCRGLILPPSF-SGLSYLTELDLSCCNLIEIPQ--DIGCLSLLRSLDLR 763 (1094)
Q Consensus 687 ~L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l-~~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~L~ 763 (1094)
+|+.|++++|.++.+ ..+..+++|+.|++++|....+|+.+ ..+++|+.|+|++|.+.++|. .+..+++|+.|+++
T Consensus 43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~ 121 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121 (176)
T ss_dssp CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECC
T ss_pred CCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEec
Confidence 344444444444433 33444445555555555444444333 566777777777777777766 56777777777777
Q ss_pred CCCCcccchh----hcCCCCCCEEEccCCC
Q 001348 764 KNNFEYLPAS----MKHLSKLKSLDLSCCN 789 (1094)
Q Consensus 764 ~n~l~~lp~~----l~~l~~L~~L~L~~~~ 789 (1094)
+|.++.+|.. +..+++|+.|++++|.
T Consensus 122 ~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 122 RNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp SSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 7777777764 6777777777777765
No 138
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.29 E-value=9e-12 Score=128.59 Aligned_cols=128 Identities=21% Similarity=0.221 Sum_probs=108.1
Q ss_pred EEeccCCCCCcccCCccC-CccEEEeccCCCCccccc--cccccccceeecccccccccchhhhhcCCcccEEeccCCcc
Q 001348 551 SLNFSYCVNFKEFPQISG-NVRELYLRGTPIEYVPSS--IDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSK 627 (1094)
Q Consensus 551 ~L~Ls~~~~l~~~p~~~~-~L~~L~L~~~~l~~lp~~--i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~ 627 (1094)
.++++++ .++.+|.... +|++|+|++|.+..++.. ++.+++|++|+|++|.+.+..|..|.++++|++|+|++|.+
T Consensus 12 ~l~~s~~-~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 90 (192)
T 1w8a_A 12 TVDCTGR-GLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90 (192)
T ss_dssp EEECTTS-CCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred EEEcCCC-CcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcC
Confidence 4555544 2455554333 789999999999988764 89999999999999999888899999999999999999998
Q ss_pred cCccchhhcccCccceeeccCcccccc-cchhhccCCCcEEecCCCCCCCCCC
Q 001348 628 LESFPEILEKMGCLEDIDLEGTAITEL-PSSIEYLGGLTTLNLTGCSKLDNLP 679 (1094)
Q Consensus 628 ~~~~p~~l~~l~~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~L~~~~~~~~lp 679 (1094)
.+..|..+.++++|++|+|++|.++.+ |..+..+++|++|+|++|.+....+
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 888888899999999999999999966 6788999999999999998776543
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.29 E-value=2e-12 Score=131.47 Aligned_cols=130 Identities=17% Similarity=0.179 Sum_probs=78.9
Q ss_pred CccceeeccCcccccccchhhcc-CCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccCCccc-cCCCCCcEEEc
Q 001348 639 GCLEDIDLEGTAITELPSSIEYL-GGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQLPSSI-TNLNELQVVWC 716 (1094)
Q Consensus 639 ~~L~~L~L~~~~i~~lp~~l~~l-~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p~~l-~~l~~L~~L~l 716 (1094)
.+|+.|++++|.++.+|. +..+ ++|+.|++++|.+.+. ..+..+++|+.|++++|.++.+|..+ ..+++|+.|++
T Consensus 19 ~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp TSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred CCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 334444444444444432 2222 2445555544443321 34555556666666666666555443 56666666666
Q ss_pred cCCCCCCCCC--CCCCCCCCCEEeCCCCCCCCCCcc----ccCCCCCCeeecCCCCCcccc
Q 001348 717 SGCRGLILPP--SFSGLSYLTELDLSCCNLIEIPQD----IGCLSLLRSLDLRKNNFEYLP 771 (1094)
Q Consensus 717 ~~~~~~~lp~--~l~~l~~L~~L~Ls~n~l~~lp~~----l~~l~~L~~L~L~~n~l~~lp 771 (1094)
++|....+|. .+..+++|+.|++++|.++.+|.. +..+++|+.|++++|.+....
T Consensus 96 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~~ 156 (176)
T 1a9n_A 96 TNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQ 156 (176)
T ss_dssp CSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHHHH
T ss_pred CCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHHHH
Confidence 6666655555 577788888888888888888775 788889999999888776443
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.28 E-value=1.2e-11 Score=127.63 Aligned_cols=105 Identities=25% Similarity=0.384 Sum_probs=60.7
Q ss_pred CccEEEeccCCCCccccccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccC
Q 001348 569 NVRELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEG 648 (1094)
Q Consensus 569 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~ 648 (1094)
+|++|+|++|.++.+|..+..+++|++|+|++|.+.+..+..|.++++|++|+|++|.+....|..+.++++|++|+|++
T Consensus 32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~ 111 (193)
T 2wfh_A 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHG 111 (193)
T ss_dssp TCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCC
Confidence 55666666666666665666666666666666665555555555566666666666555555555555556666666666
Q ss_pred cccccccch-hhccCCCcEEecCCCC
Q 001348 649 TAITELPSS-IEYLGGLTTLNLTGCS 673 (1094)
Q Consensus 649 ~~i~~lp~~-l~~l~~L~~L~L~~~~ 673 (1094)
|.|+.+|.. +..+++|+.|+|++|.
T Consensus 112 N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 112 NDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCeeChhhhhcCccccEEEeCCCC
Confidence 655555542 4445555555555543
No 141
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.28 E-value=5.3e-11 Score=137.30 Aligned_cols=277 Identities=12% Similarity=0.050 Sum_probs=165.6
Q ss_pred CCCCeeehhHHHHHHHhccccC--CCCeEEEEEEecCCCchhhHHHHHHHHHhccc-----cc-eEEeeechhhhccCCC
Q 001348 90 DFEGLIGLDARIERIKSLLCIG--LPNIQIMGIWGMGGIGKTTIAGVLFNQISRKF-----ES-KCFMANVREESEKGGG 161 (1094)
Q Consensus 90 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-----~~-~~~~~~~~~~~~~~~~ 161 (1094)
.++.++||+.+++++..++... ....+.+.|+|++|+||||+|+++++.....+ .. .+++.+ .. . .+
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~-~~---~-~~ 91 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA-RH---R-ET 91 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET-TT---S-CS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC-Cc---C-CC
Confidence 4478999999999999988542 34567899999999999999999999775432 22 233332 11 1 34
Q ss_pred hHHHHHHHHHhhhccCCcccC-CCc-hHHHHHHh--cCCeEEEEEecCCChHh-------HHHHhcCCCCC--CCCceEE
Q 001348 162 LVHLRDRLLSQILDESIRIET-PYI-PHYIRERL--QCMKVFIVLDDVNKFRQ-------LEYLAGGLDRF--GLGSRII 228 (1094)
Q Consensus 162 ~~~l~~~ll~~l~~~~~~~~~-~~~-~~~l~~~L--~~kr~LlVLDdv~~~~~-------~~~l~~~~~~~--~~gsrIi 228 (1094)
...+...++.++......... ... ...+.+.+ .+++.+||||+++.... +..+....... ..+..+|
T Consensus 92 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I 171 (387)
T 2v1u_A 92 PYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLV 171 (387)
T ss_dssp HHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEE
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEE
Confidence 456677777776432111111 111 34455555 35689999999976532 22223222111 4456788
Q ss_pred EEeCChhh--------hhhcCcCeEEEccCCCHHHHHHHHHhhcc---cCCCCCchHHHHHHHHHHHhC---CCchH-HH
Q 001348 229 VTSRDKQV--------LEKYGVDHIYEVEELNNIEALELFCKYAF---RQNHHPQDLMVISGRVVDYAR---GNPLA-IK 293 (1094)
Q Consensus 229 iTTR~~~v--------~~~~~~~~~~~l~~L~~~ea~~Lf~~~af---~~~~~~~~~~~~~~~i~~~~~---GlPLa-l~ 293 (1094)
.||+.... ...+ ....+.+++++.++..+++...+. ......+ +..+.++++++ |.|.. +.
T Consensus 172 ~~t~~~~~~~~l~~~l~~r~-~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~ 247 (387)
T 2v1u_A 172 GITNSLGFVENLEPRVKSSL-GEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALD 247 (387)
T ss_dssp EECSCSTTSSSSCHHHHTTT-TSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHH
T ss_pred EEECCCchHhhhCHHHHhcC-CCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHH
Confidence 88876632 1112 125899999999999999988753 2222222 34567777887 99943 33
Q ss_pred HHhhhhc-----C---CCHHHHHHHHHHhhcCCCccHHHHHHHhhhcccHHhhhhhcccccccCCcC---HH----HHHH
Q 001348 294 VLASFFH-----R---KSKLDWEIALQNLKQISGPEILAVLKISYDELNWEAKNLFLDIACFFKGED---IN----FVTL 358 (1094)
Q Consensus 294 ~lg~~L~-----~---~~~~~w~~~l~~l~~~~~~~i~~~L~~sy~~L~~~~k~~fl~~a~f~~~~~---~~----~~~~ 358 (1094)
.+..... + -+.+.++.++.... ...+.-++..|++.++..++.++...++.. .. ....
T Consensus 248 ~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~ 320 (387)
T 2v1u_A 248 LLRVAGEIAERRREERVRREHVYSARAEIE-------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKE 320 (387)
T ss_dssp HHHHHHHHHHHTTCSCBCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 3222211 1 15677777776542 235666788999999998888885544322 22 1122
Q ss_pred HHhC-CC------ccccchhhhhccCceeEe
Q 001348 359 ILDN-HY------SVHYGLSVLVDKSLVRIS 382 (1094)
Q Consensus 359 il~~-~~------~~~~~l~~L~~~sLi~~~ 382 (1094)
+... +. .+...++.|...|++...
T Consensus 321 ~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 321 LTSTLGLEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhcCCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 2221 21 123447778888888764
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.27 E-value=1.6e-11 Score=126.80 Aligned_cols=126 Identities=16% Similarity=0.154 Sum_probs=91.8
Q ss_pred cEEEeccCCCCccccccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccCcc
Q 001348 571 RELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEGTA 650 (1094)
Q Consensus 571 ~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~ 650 (1094)
+.++++++.++.+|..+. ++|++|+|++|.+. .+|..+.++++|++|+|++|.+.+..+..|.++++|++|+|++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 578888888999987664 58899999988764 677778888888888888888777777778888888888888888
Q ss_pred cccccc-hhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCc
Q 001348 651 ITELPS-SIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAIS 699 (1094)
Q Consensus 651 i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~ 699 (1094)
|+.++. .+..+++|++|+|++|.+....+..+..+++|+.|++++|.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 776664 4666667777777666555433344555666666666655443
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.23 E-value=4e-11 Score=121.94 Aligned_cols=128 Identities=19% Similarity=0.180 Sum_probs=77.4
Q ss_pred ccEEEeccCCCCccccccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccCc
Q 001348 570 VRELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEGT 649 (1094)
Q Consensus 570 L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~ 649 (1094)
.+.++++++++..+|..+. ++|+.|++++|.+.+..+..+.++++|++|++++|.+.+..+..+.++++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 4566667777777765443 56777777777665544455566677777777766655444455566666666666666
Q ss_pred ccccccch-hhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCc
Q 001348 650 AITELPSS-IEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAIS 699 (1094)
Q Consensus 650 ~i~~lp~~-l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~ 699 (1094)
.++.+|.. +..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 66665543 455666666666665544333333455566666666665544
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.22 E-value=1.8e-11 Score=137.92 Aligned_cols=99 Identities=14% Similarity=0.082 Sum_probs=68.3
Q ss_pred CCcccEEecCCccCccCCc-cccCCCCCcEEEccCCCCCCC-CCCCCCCCCCC-EEeCCCCCCCCCC-ccccCCCCCCee
Q 001348 685 LKSLKMLCANESAISQLPS-SITNLNELQVVWCSGCRGLIL-PPSFSGLSYLT-ELDLSCCNLIEIP-QDIGCLSLLRSL 760 (1094)
Q Consensus 685 l~~L~~L~l~~~~i~~~p~-~l~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~-~L~Ls~n~l~~lp-~~l~~l~~L~~L 760 (1094)
+++|+.|++.+|.++.+|. .|.++.+|+.+.+.++ ...+ +..|.++++|+ .|+|.+ +++.++ ..|.++++|+.|
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 5677777777777777654 4666777777777766 3333 33577777777 777777 666665 346777788888
Q ss_pred ecCCCCCcccch-hhcCCCCCCEEEc
Q 001348 761 DLRKNNFEYLPA-SMKHLSKLKSLDL 785 (1094)
Q Consensus 761 ~L~~n~l~~lp~-~l~~l~~L~~L~L 785 (1094)
++++|+++.++. .+.++++|+.|+.
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EeCCCccCccchhhhcCCcchhhhcc
Confidence 887777777765 5677777777653
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.21 E-value=1.3e-13 Score=143.25 Aligned_cols=55 Identities=27% Similarity=0.244 Sum_probs=30.6
Q ss_pred CCCCCCEEeCCCCCCCCCCc--cccCCCCCCeeecCCCCCcccch-----------hhcCCCCCCEEE
Q 001348 730 GLSYLTELDLSCCNLIEIPQ--DIGCLSLLRSLDLRKNNFEYLPA-----------SMKHLSKLKSLD 784 (1094)
Q Consensus 730 ~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~L~~n~l~~lp~-----------~l~~l~~L~~L~ 784 (1094)
.+++|+.|+|++|.++.++. .+..+++|+.|++++|.++..+. .+..+++|+.|+
T Consensus 113 ~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 34445555555555555433 45556666666666666653321 256677777665
No 146
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.21 E-value=1.1e-10 Score=118.76 Aligned_cols=131 Identities=24% Similarity=0.308 Sum_probs=84.0
Q ss_pred cceeeccCcccccccchhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccCCccccCCCCCcEEEccCCC
Q 001348 641 LEDIDLEGTAITELPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQLPSSITNLNELQVVWCSGCR 720 (1094)
Q Consensus 641 L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~ 720 (1094)
.+.++++++.++.+|..+ .++|+.|++++|.+.+..+..+..+++|+.|++++|.++.+|.
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------------- 69 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD----------------- 69 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT-----------------
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeCh-----------------
Confidence 355666666666666433 2456666666655444333344555555555555555544432
Q ss_pred CCCCCCCCCCCCCCCEEeCCCCCCCCCCcc-ccCCCCCCeeecCCCCCcccchh-hcCCCCCCEEEccCCCCCCCCC
Q 001348 721 GLILPPSFSGLSYLTELDLSCCNLIEIPQD-IGCLSLLRSLDLRKNNFEYLPAS-MKHLSKLKSLDLSCCNMLQSLP 795 (1094)
Q Consensus 721 ~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~~~~l~~lp 795 (1094)
..+..+++|+.|+|++|.++.+|.. +..+++|+.|+|++|+++.+|.. +..+++|+.|+|++|++.+..|
T Consensus 70 -----~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 70 -----GVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp -----TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred -----hHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 2246677777777777777776654 56778888888888888877765 4678888888888887766554
No 147
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.19 E-value=2.8e-13 Score=140.75 Aligned_cols=101 Identities=24% Similarity=0.288 Sum_probs=50.4
Q ss_pred CccEEEeccC--CCCccccccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeec
Q 001348 569 NVRELYLRGT--PIEYVPSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDL 646 (1094)
Q Consensus 569 ~L~~L~L~~~--~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L 646 (1094)
+|+.+.+.++ .++.+|..+..+++|++|+|++|.+.+ +| .+.++++|++|++++|.+. .+|..+..+++|++|++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWI 100 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEEC
Confidence 3444444442 444444455555555555555555433 44 4555555555555554433 44444444555555555
Q ss_pred cCcccccccchhhccCCCcEEecCCCC
Q 001348 647 EGTAITELPSSIEYLGGLTTLNLTGCS 673 (1094)
Q Consensus 647 ~~~~i~~lp~~l~~l~~L~~L~L~~~~ 673 (1094)
++|.++.+| .+..+++|+.|++++|.
T Consensus 101 ~~N~l~~l~-~~~~l~~L~~L~l~~N~ 126 (198)
T 1ds9_A 101 SYNQIASLS-GIEKLVNLRVLYMSNNK 126 (198)
T ss_dssp EEEECCCHH-HHHHHHHSSEEEESEEE
T ss_pred cCCcCCcCC-ccccCCCCCEEECCCCc
Confidence 555555544 34445555555555443
No 148
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.16 E-value=4e-10 Score=130.03 Aligned_cols=281 Identities=12% Similarity=0.057 Sum_probs=164.8
Q ss_pred CCCCeeehhHHHHHHHhcccc----CCCCeEEEEEEecCCCchhhHHHHHHHHHhccc-cceEEeeechhhhccCCChHH
Q 001348 90 DFEGLIGLDARIERIKSLLCI----GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKF-ESKCFMANVREESEKGGGLVH 164 (1094)
Q Consensus 90 ~~~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~~~~~~~~~~ 164 (1094)
.++.++||+.+++++...+.. .....+.+.|+|++|+||||+|+++++...... ...+++.+.. . .....
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~----~-~~~~~ 89 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFI----Y-RNFTA 89 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTT----C-CSHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCcc----C-CCHHH
Confidence 347899999999999998864 222345899999999999999999999876542 2234443221 1 33456
Q ss_pred HHHHHHHhhhccCCccc-CCCc-hHHHHHHhc--CCeEEEEEecCCCh--HhHHHHhcCCCCCC----CCceEEEEeCCh
Q 001348 165 LRDRLLSQILDESIRIE-TPYI-PHYIRERLQ--CMKVFIVLDDVNKF--RQLEYLAGGLDRFG----LGSRIIVTSRDK 234 (1094)
Q Consensus 165 l~~~ll~~l~~~~~~~~-~~~~-~~~l~~~L~--~kr~LlVLDdv~~~--~~~~~l~~~~~~~~----~gsrIiiTTR~~ 234 (1094)
+...++..+........ .... ...+.+.+. +++.+||||+++.. ..+..+........ .+..||+||++.
T Consensus 90 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 90 IIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp HHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred HHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 66666666533211111 1011 333444443 56899999999664 44555544433221 467888888876
Q ss_pred hhhhhcC-------cCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHh---------CCCchHHHHHhhh
Q 001348 235 QVLEKYG-------VDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYA---------RGNPLAIKVLASF 298 (1094)
Q Consensus 235 ~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~---------~GlPLal~~lg~~ 298 (1094)
.+..... ....+.+++++.++..+++...+........--.+..+.+++++ .|.|..+..+...
T Consensus 170 ~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~ 249 (389)
T 1fnn_A 170 AVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYR 249 (389)
T ss_dssp HHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHH
T ss_pred hHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHH
Confidence 4432221 12479999999999999998875321111112235667888888 7887554444332
Q ss_pred hc------C---CCHHHHHHHHHHhhcCCCccHHHHHHHhhhcccHHhhhhhccccccc---CC--cCHHHHH----HHH
Q 001348 299 FH------R---KSKLDWEIALQNLKQISGPEILAVLKISYDELNWEAKNLFLDIACFF---KG--EDINFVT----LIL 360 (1094)
Q Consensus 299 L~------~---~~~~~w~~~l~~l~~~~~~~i~~~L~~sy~~L~~~~k~~fl~~a~f~---~~--~~~~~~~----~il 360 (1094)
.. + -+.+....++..... ..+ .-.+..|+..++.++..++.+. .+ .....+. .+.
T Consensus 250 a~~~a~~~~~~~i~~~~v~~~~~~~~~---~~~----~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~ 322 (389)
T 1fnn_A 250 SAYAAQQNGRKHIAPEDVRKSSKEVLF---GIS----EEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVC 322 (389)
T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHHSC---CCC----HHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHhh---hhH----HHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHH
Confidence 11 1 133444444443321 112 2335678888888888777654 22 2222221 222
Q ss_pred hC-CC------ccccchhhhhccCceeEe
Q 001348 361 DN-HY------SVHYGLSVLVDKSLVRIS 382 (1094)
Q Consensus 361 ~~-~~------~~~~~l~~L~~~sLi~~~ 382 (1094)
.. +. .....+..|.++++|...
T Consensus 323 ~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 323 EEYGERPRVHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp HHTTCCCCCHHHHHHHHHHHHHTTSSEEE
T ss_pred HHcCCCCCCHHHHHHHHHHHHhCCCeEEe
Confidence 11 21 123457889999999885
No 149
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.16 E-value=2.2e-10 Score=122.57 Aligned_cols=199 Identities=13% Similarity=0.092 Sum_probs=121.3
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHH
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRD 167 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~ 167 (1094)
|...++++|++..++.+...+..+. ..+.+.|+|++|+||||+|+++++.+...+..... .+ ...... .
T Consensus 19 p~~~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~-~~--------~~~~~~-~ 87 (250)
T 1njg_A 19 PQTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT-PC--------GVCDNC-R 87 (250)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSS-CC--------SCSHHH-H
T ss_pred CccHHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC-CC--------cccHHH-H
Confidence 5566789999999999999986432 23488999999999999999999977554321100 00 000000 0
Q ss_pred HHHHhhhccCCcccC-C-CchH---HHHHH-----hcCCeEEEEEecCCC--hHhHHHHhcCCCCCCCCceEEEEeCChh
Q 001348 168 RLLSQILDESIRIET-P-YIPH---YIRER-----LQCMKVFIVLDDVNK--FRQLEYLAGGLDRFGLGSRIIVTSRDKQ 235 (1094)
Q Consensus 168 ~ll~~l~~~~~~~~~-~-~~~~---~l~~~-----L~~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIiiTTR~~~ 235 (1094)
.+.......-..... . .... .+.+. ..+++.+||+||++. ...++.+...+.....+.++|+||+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 88 EIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp HHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred HHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 000000000000000 0 0011 11121 134679999999965 3456666555444456788999987654
Q ss_pred hhh-h-cCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHHHHHhhhh
Q 001348 236 VLE-K-YGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAIKVLASFF 299 (1094)
Q Consensus 236 v~~-~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg~~L 299 (1094)
... . ......+++++++.++..+++...+....... -.+..+.++++++|.|..+..+...+
T Consensus 168 ~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 168 KLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH--EPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCB--CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 221 1 22346899999999999999998775432211 23556789999999999987776543
No 150
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.13 E-value=1.1e-10 Score=131.66 Aligned_cols=212 Identities=15% Similarity=0.141 Sum_probs=111.3
Q ss_pred CccEEEeccCCC-Ccccccccc-ccccceeeccccccc--ccchhhhhcCCcccEEeccCCcccCccchhhcc-------
Q 001348 569 NVRELYLRGTPI-EYVPSSIDC-LAKLEYLDLGHCTIL--ESISTSICKLKSLLKLCLDNCSKLESFPEILEK------- 637 (1094)
Q Consensus 569 ~L~~L~L~~~~l-~~lp~~i~~-L~~L~~L~L~~~~~~--~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~------- 637 (1094)
+|+.|.++|+-- ..+ ..+.. +++|+.|||++|++. ...+. .++.++.+.+..+. .-+..|.+
T Consensus 26 ~l~~L~l~g~i~~~~~-~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~---I~~~aF~~~~~~~~~ 98 (329)
T 3sb4_A 26 SITHLTLTGKLNAEDF-RHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANF---VPAYAFSNVVNGVTK 98 (329)
T ss_dssp HCSEEEEEEEECHHHH-HHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTE---ECTTTTEEEETTEEE
T ss_pred ceeEEEEeccccHHHH-HHHHHhhccCeEEecCcceeEEecCccc---cccccccccccccc---cCHHHhccccccccc
Confidence 788999987411 111 12233 788999999999876 21111 12223334443331 11234455
Q ss_pred -cCccceeeccCcccccccc-hhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccC----ccC-Ccccc----
Q 001348 638 -MGCLEDIDLEGTAITELPS-SIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAI----SQL-PSSIT---- 706 (1094)
Q Consensus 638 -l~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i----~~~-p~~l~---- 706 (1094)
+++|+.|+|.. .++.++. .+.++++|+.|++.+|.....-+..|.++.++..+....+.. ..+ ...+.
T Consensus 99 g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 99 GKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp ECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred ccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 77777777777 6666655 366777777777777665544445566655555555443211 000 00111
Q ss_pred ----------------------------------------------CCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeC
Q 001348 707 ----------------------------------------------NLNELQVVWCSGCRGLILPP-SFSGLSYLTELDL 739 (1094)
Q Consensus 707 ----------------------------------------------~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~L 739 (1094)
.+++|+.+++++|....+|. .|.++.+|+.|+|
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence 14555555555555444443 3555555555555
Q ss_pred CCCCCCCCCcc-ccCCCCCC-eeecCCCCCcccc-hhhcCCCCCCEEEccCCCC
Q 001348 740 SCCNLIEIPQD-IGCLSLLR-SLDLRKNNFEYLP-ASMKHLSKLKSLDLSCCNM 790 (1094)
Q Consensus 740 s~n~l~~lp~~-l~~l~~L~-~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~~~~ 790 (1094)
.+| ++.++.. |.++++|+ .|.|.+ +++.++ ..+.+|++|+.|++++|.+
T Consensus 258 ~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i 309 (329)
T 3sb4_A 258 PHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKI 309 (329)
T ss_dssp CTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCC
T ss_pred Ccc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCcc
Confidence 554 4444433 45555555 555555 455444 3455555555555555443
No 151
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.06 E-value=2.1e-09 Score=113.26 Aligned_cols=188 Identities=13% Similarity=0.105 Sum_probs=117.6
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHH
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRD 167 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~ 167 (1094)
|.....++|++..++++..++.... .+.+.|+|++|+||||+|+++++.+........|+.... ... .+...+..
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~ 87 (226)
T 2chg_A 13 PRTLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA--SDE-RGIDVVRH 87 (226)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEET--TCT-TCHHHHHH
T ss_pred CCCHHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecc--ccc-cChHHHHH
Confidence 5566789999999999999986542 334899999999999999999997644332222222111 111 22222222
Q ss_pred HHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCCh--HhHHHHhcCCCCCCCCceEEEEeCChhhh-hh-cCcC
Q 001348 168 RLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKF--RQLEYLAGGLDRFGLGSRIIVTSRDKQVL-EK-YGVD 243 (1094)
Q Consensus 168 ~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~~v~-~~-~~~~ 243 (1094)
.+........ .-..++.+||+||++.. ...+.+...+.....+.++|+||+..... .. ....
T Consensus 88 -~~~~~~~~~~-------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~ 153 (226)
T 2chg_A 88 -KIKEFARTAP-------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153 (226)
T ss_dssp -HHHHHHTSCC-------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred -HHHHHhcccC-------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhC
Confidence 1222111100 01247899999999664 33445544444445678899998876421 11 1223
Q ss_pred eEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHHHHHh
Q 001348 244 HIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAIKVLA 296 (1094)
Q Consensus 244 ~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg 296 (1094)
..+++++++.++..+++...+...... --.+..+.+++.++|.|..+..+.
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 154 AVFRFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ceeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 489999999999999998876432221 113456778899999998655443
No 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.03 E-value=5.6e-10 Score=112.54 Aligned_cols=106 Identities=20% Similarity=0.208 Sum_probs=81.3
Q ss_pred CccEEEeccCCCCccccccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccC
Q 001348 569 NVRELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEG 648 (1094)
Q Consensus 569 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~ 648 (1094)
..+.|+++++.++.+|..+. ++|++|+|++|.+.+..|..|.++++|++|+|++|.+.+..+..+.++++|++|+|++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 35678888888888887764 7888888888888777777788888888888888877666666677888888888888
Q ss_pred cccccccch-hhccCCCcEEecCCCCCCC
Q 001348 649 TAITELPSS-IEYLGGLTTLNLTGCSKLD 676 (1094)
Q Consensus 649 ~~i~~lp~~-l~~l~~L~~L~L~~~~~~~ 676 (1094)
|.|+.+|.. +..+++|++|+|++|.+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 888877764 6777777777777776543
No 153
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.03 E-value=5.2e-10 Score=113.22 Aligned_cols=104 Identities=17% Similarity=0.197 Sum_probs=74.3
Q ss_pred ccEEEeccCCCCccccccccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccCc
Q 001348 570 VRELYLRGTPIEYVPSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEGT 649 (1094)
Q Consensus 570 L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~ 649 (1094)
-+.++++++.+..+|..+. ++|++|+|++|.+.+..|..|.++++|++|+|++|.+.+..+..+.++++|++|+|++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 3577888888888887664 77888888888777766777777777777777777665544455677777777777777
Q ss_pred ccccccch-hhccCCCcEEecCCCCCC
Q 001348 650 AITELPSS-IEYLGGLTTLNLTGCSKL 675 (1094)
Q Consensus 650 ~i~~lp~~-l~~l~~L~~L~L~~~~~~ 675 (1094)
.|+.+|.. +..+++|++|+|++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 77776654 666667777776666543
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.01 E-value=9.5e-09 Score=118.43 Aligned_cols=103 Identities=14% Similarity=0.170 Sum_probs=61.1
Q ss_pred CcccEEecCCccCccC-CccccCCCCCcEEEccCCCCC------CCCCCCCCCCCCCEEeCCCCCCCCCCcc-ccCCCCC
Q 001348 686 KSLKMLCANESAISQL-PSSITNLNELQVVWCSGCRGL------ILPPSFSGLSYLTELDLSCCNLIEIPQD-IGCLSLL 757 (1094)
Q Consensus 686 ~~L~~L~l~~~~i~~~-p~~l~~l~~L~~L~l~~~~~~------~lp~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L 757 (1094)
.+|+.+.+. +.++.+ ...|.++++|+.+.+.++... .-+..|.++++|+.++|. ++++.++.. |.++++|
T Consensus 248 ~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L 325 (401)
T 4fdw_A 248 SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKV 325 (401)
T ss_dssp CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSC
T ss_pred CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCc
Confidence 345555552 233333 334555566666665554432 223457777778888777 346665543 6667788
Q ss_pred CeeecCCCCCcccch-hhcCCCCCCEEEccCCCCCC
Q 001348 758 RSLDLRKNNFEYLPA-SMKHLSKLKSLDLSCCNMLQ 792 (1094)
Q Consensus 758 ~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~~~~l~ 792 (1094)
+.|.|..| ++.++. .+.++ +|+.|++.+|....
T Consensus 326 ~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 326 TQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQ 359 (401)
T ss_dssp CEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCB
T ss_pred cEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcc
Confidence 88888443 666653 56667 78888888775443
No 155
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.01 E-value=1.5e-09 Score=109.34 Aligned_cols=105 Identities=23% Similarity=0.297 Sum_probs=84.5
Q ss_pred ccEEecCCccCccCCccccCCCCCcEEEccCCCCCCC-CCCCCCCCCCCEEeCCCCCCCCCCcc-ccCCCCCCeeecCCC
Q 001348 688 LKMLCANESAISQLPSSITNLNELQVVWCSGCRGLIL-PPSFSGLSYLTELDLSCCNLIEIPQD-IGCLSLLRSLDLRKN 765 (1094)
Q Consensus 688 L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n 765 (1094)
.+.+++++|.++.+|..+. ++|+.|++++|....+ |..+.++++|++|+|++|+++.+|.. +..+++|+.|+|++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4567777777777776653 7788888888887666 45688889999999999999988776 578999999999999
Q ss_pred CCcccchh-hcCCCCCCEEEccCCCCCCCC
Q 001348 766 NFEYLPAS-MKHLSKLKSLDLSCCNMLQSL 794 (1094)
Q Consensus 766 ~l~~lp~~-l~~l~~L~~L~L~~~~~l~~l 794 (1094)
+|+.+|.. +..+++|+.|+|++|++....
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 99988864 788999999999999876543
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.00 E-value=1e-08 Score=118.14 Aligned_cols=149 Identities=11% Similarity=0.127 Sum_probs=76.3
Q ss_pred hhcccCccceeeccCcccccccch-hhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCc-----cC-Ccccc
Q 001348 634 ILEKMGCLEDIDLEGTAITELPSS-IEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAIS-----QL-PSSIT 706 (1094)
Q Consensus 634 ~l~~l~~L~~L~L~~~~i~~lp~~-l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~-----~~-p~~l~ 706 (1094)
.|.++++|+.+++..+ ++.++.. +.+ .+|+.+.+.+ +....-...|.++++|+.+.+.++.+. .+ +..|.
T Consensus 221 aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~ 297 (401)
T 4fdw_A 221 AFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLE 297 (401)
T ss_dssp TTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTT
T ss_pred HhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhh
Confidence 3444444444444432 3333322 222 4455554432 111111234455555555555544433 22 33455
Q ss_pred CCCCCcEEEccCCCCCCC-CCCCCCCCCCCEEeCCCCCCCCCCc-cccCCCCCCeeecCCCCCcccch-hhcCCC-CCCE
Q 001348 707 NLNELQVVWCSGCRGLIL-PPSFSGLSYLTELDLSCCNLIEIPQ-DIGCLSLLRSLDLRKNNFEYLPA-SMKHLS-KLKS 782 (1094)
Q Consensus 707 ~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~-~L~~ 782 (1094)
++++|+.+.+.++ ...+ ...|.++.+|+.+.|..+ ++.+.. .|.++ +|+.|.+.+|.+..++. .+..++ +++.
T Consensus 298 ~c~~L~~l~l~~~-i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~ 374 (401)
T 4fdw_A 298 GCPKLARFEIPES-IRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITV 374 (401)
T ss_dssp TCTTCCEECCCTT-CCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCE
T ss_pred CCccCCeEEeCCc-eEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccE
Confidence 6666666666533 2222 234667777777777443 555543 36666 78888888777776653 344553 6677
Q ss_pred EEccCC
Q 001348 783 LDLSCC 788 (1094)
Q Consensus 783 L~L~~~ 788 (1094)
|.+..+
T Consensus 375 l~vp~~ 380 (401)
T 4fdw_A 375 IRVPAE 380 (401)
T ss_dssp EEECGG
T ss_pred EEeCHH
Confidence 776554
No 157
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.95 E-value=3.2e-09 Score=107.38 Aligned_cols=107 Identities=22% Similarity=0.315 Sum_probs=70.1
Q ss_pred ceeeccCcccccccchhhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccCCccccCCCCCcEEEccCCCC
Q 001348 642 EDIDLEGTAITELPSSIEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQLPSSITNLNELQVVWCSGCRG 721 (1094)
Q Consensus 642 ~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~~ 721 (1094)
+.++++++.++.+|..+. ++|+.|+|++|.+.+..|..+.++++|+.|++++|.++.+|..
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~----------------- 75 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTG----------------- 75 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-----------------
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChh-----------------
Confidence 566777777777766543 5666666666665555555566666666666666665555432
Q ss_pred CCCCCCCCCCCCCCEEeCCCCCCCCCCcc-ccCCCCCCeeecCCCCCcccch
Q 001348 722 LILPPSFSGLSYLTELDLSCCNLIEIPQD-IGCLSLLRSLDLRKNNFEYLPA 772 (1094)
Q Consensus 722 ~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~ 772 (1094)
.+.++++|+.|+|++|+++.+|.. +..+++|+.|+|++|.+...+.
T Consensus 76 -----~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 76 -----VFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp -----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred -----HhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 245667777777777777777665 6777788888888887775554
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.87 E-value=1.3e-07 Score=109.19 Aligned_cols=124 Identities=15% Similarity=0.144 Sum_probs=58.1
Q ss_pred hhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccCCccccCCCCCcEEEccCCCCCCCCCCCCCCCCCCEE
Q 001348 658 IEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQLPSSITNLNELQVVWCSGCRGLILPPSFSGLSYLTEL 737 (1094)
Q Consensus 658 l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L 737 (1094)
+..+..|+.+.+..+. ...-...+..+..|+.+....+.+.. ..+..+.+|+.+.+..+-...-...|.++.+|+.+
T Consensus 249 f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~i 325 (394)
T 4fs7_A 249 FYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLDSVKFIGEEAFESCTSLVSI 325 (394)
T ss_dssp TTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECTTCCEECTTTTTTCTTCCEE
T ss_pred ccccccceeEEcCCCc-ceeeccccccccccceeccCceeecc--ccccccccccccccccccceechhhhcCCCCCCEE
Confidence 3444555555554321 11122234444555554444332211 23445555555555443222222345556666666
Q ss_pred eCCCCCCCCCCc-cccCCCCCCeeecCCCCCcccch-hhcCCCCCCEEEcc
Q 001348 738 DLSCCNLIEIPQ-DIGCLSLLRSLDLRKNNFEYLPA-SMKHLSKLKSLDLS 786 (1094)
Q Consensus 738 ~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~ 786 (1094)
+|.+ +++.+.. .+.++++|+.+.|..+ ++.++. .+.++++|+.++|.
T Consensus 326 ~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 326 DLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp CCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred EeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence 6643 2444432 3555666666666544 555543 45556666666654
No 159
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.86 E-value=1.6e-10 Score=131.97 Aligned_cols=60 Identities=18% Similarity=0.191 Sum_probs=27.3
Q ss_pred CCCCCEEeCCCCCCCC-----CCccccCCCCCCeeecCCCCCcc-----cchhhcCCCCCCEEEccCCCC
Q 001348 731 LSYLTELDLSCCNLIE-----IPQDIGCLSLLRSLDLRKNNFEY-----LPASMKHLSKLKSLDLSCCNM 790 (1094)
Q Consensus 731 l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~L~~~~~ 790 (1094)
+++|++|+|++|.+.+ ++..+..+++|+.|+|++|.++. ++..+...++|++|+|++|++
T Consensus 182 ~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 182 NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 3344444444444432 22333444455555555555542 223334445555555555543
No 160
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.85 E-value=1.3e-08 Score=114.15 Aligned_cols=187 Identities=16% Similarity=0.229 Sum_probs=115.3
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhcc-ccceEEeeechhhhccCCChHHHH
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRK-FESKCFMANVREESEKGGGLVHLR 166 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~~~~~~~~~~l~ 166 (1094)
|...++++|++..++.+.+++..+. .+.+.|+|++|+||||+|+++++.+... +...+...+.. .. .+...+
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~---~~-~~~~~i- 89 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNAS---DD-RGIDVV- 89 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTT---SC-CSHHHH-
T ss_pred CCCHHHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCc---cc-cChHHH-
Confidence 5666789999999999999986443 3338899999999999999999986432 22112111111 11 122222
Q ss_pred HHHHHhhhccCCcccCCCchHHHHHHh-cCCeEEEEEecCCCh--HhHHHHhcCCCCCCCCceEEEEeCChhh-hhh-cC
Q 001348 167 DRLLSQILDESIRIETPYIPHYIRERL-QCMKVFIVLDDVNKF--RQLEYLAGGLDRFGLGSRIIVTSRDKQV-LEK-YG 241 (1094)
Q Consensus 167 ~~ll~~l~~~~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~~v-~~~-~~ 241 (1094)
+.++..+..... .+ .+++.++|+||++.. ...+.+...+.....++++|+||+...- ... ..
T Consensus 90 ~~~~~~~~~~~~-------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~s 156 (323)
T 1sxj_B 90 RNQIKHFAQKKL-------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQS 156 (323)
T ss_dssp HTHHHHHHHBCC-------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHT
T ss_pred HHHHHHHHhccc-------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHh
Confidence 222222211000 11 346889999999763 3344444333333467888888876532 111 22
Q ss_pred cCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchH-HHHHh
Q 001348 242 VDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLA-IKVLA 296 (1094)
Q Consensus 242 ~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLa-l~~lg 296 (1094)
....+++++++.++..+++...+....... -.+....+++.++|.|.. +..+.
T Consensus 157 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 157 QCAILRYSKLSDEDVLKRLLQIIKLEDVKY--TNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHHHHHTCCB--CHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hceEEeecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 346899999999999999988764322211 124567899999999954 44443
No 161
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.80 E-value=3.6e-10 Score=129.07 Aligned_cols=42 Identities=17% Similarity=0.120 Sum_probs=31.0
Q ss_pred CCCCCCCCEEeCCCCCCCC-----CCccccCCCCCCeeecCCCCCcc
Q 001348 728 FSGLSYLTELDLSCCNLIE-----IPQDIGCLSLLRSLDLRKNNFEY 769 (1094)
Q Consensus 728 l~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~L~~n~l~~ 769 (1094)
+...++|++|+|++|.+++ ++..+...++|+.|+|++|.|+.
T Consensus 207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 4455678888888888874 44445567889999999998873
No 162
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.74 E-value=1.4e-08 Score=115.11 Aligned_cols=103 Identities=15% Similarity=0.061 Sum_probs=81.6
Q ss_pred EEEeccC-CCCccccccccccccceeeccc-ccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccCc
Q 001348 572 ELYLRGT-PIEYVPSSIDCLAKLEYLDLGH-CTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEGT 649 (1094)
Q Consensus 572 ~L~L~~~-~l~~lp~~i~~L~~L~~L~L~~-~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~ 649 (1094)
.++++++ +++.+|. +..+++|+.|+|++ |.+.+..|..|.+|++|++|+|++|.+.+..|..|.++++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4677776 8888988 88889999999986 7776666677888999999999998887777788888888888888888
Q ss_pred ccccccchhhccCCCcEEecCCCCCC
Q 001348 650 AITELPSSIEYLGGLTTLNLTGCSKL 675 (1094)
Q Consensus 650 ~i~~lp~~l~~l~~L~~L~L~~~~~~ 675 (1094)
.|+.+|..+.....|+.|+|.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCcc
Confidence 88888765444334777777776543
No 163
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.74 E-value=4.6e-08 Score=109.73 Aligned_cols=188 Identities=15% Similarity=0.173 Sum_probs=115.5
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEee-echhhhccCCChHHHH
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMA-NVREESEKGGGLVHLR 166 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~-~~~~~~~~~~~~~~l~ 166 (1094)
|...++++|++..++.+..++..+ ..+.+.|+|++|+||||+|+++++.+........++. +.... .+...+
T Consensus 21 p~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~----~~~~~~- 93 (327)
T 1iqp_A 21 PQRLDDIVGQEHIVKRLKHYVKTG--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDE----RGINVI- 93 (327)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHT--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCH----HHHHTT-
T ss_pred CCCHHHhhCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeecccc----CchHHH-
Confidence 666788999999999999988654 3334899999999999999999998643321111221 11110 000111
Q ss_pred HHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCCh--HhHHHHhcCCCCCCCCceEEEEeCChhhh-hh-cCc
Q 001348 167 DRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKF--RQLEYLAGGLDRFGLGSRIIVTSRDKQVL-EK-YGV 242 (1094)
Q Consensus 167 ~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~~v~-~~-~~~ 242 (1094)
+..+.+..... + ...+++.++|+||++.. +..+.+.........++++|+||....-. .. ...
T Consensus 94 ~~~~~~~~~~~-~------------~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr 160 (327)
T 1iqp_A 94 REKVKEFARTK-P------------IGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR 160 (327)
T ss_dssp HHHHHHHHHSC-C------------GGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHT
T ss_pred HHHHHHHHhhC-C------------cCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhh
Confidence 11111111000 0 01256889999999754 44555554444445678899888765321 11 112
Q ss_pred CeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHHHHHhh
Q 001348 243 DHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAIKVLAS 297 (1094)
Q Consensus 243 ~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg~ 297 (1094)
...+++++++.++..+++...+...... --.+....+++.++|.|..+..+..
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 161 CAIFRFRPLRDEDIAKRLRYIAENEGLE--LTEEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHTTTCE--ECHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CcEEEecCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 2478999999999999998876432221 1234567888999999986655443
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.70 E-value=3.5e-07 Score=105.48 Aligned_cols=315 Identities=13% Similarity=0.109 Sum_probs=177.5
Q ss_pred ccccCccccCCCCCceEEEEeCCCCCCccccccccccCCccccCcccccEEEecCCCCCCCCCC-C-Cccccceeecccc
Q 001348 445 DINLNPQAFANMPNLRFLKFYMPKLFGISDMVCKLHLPQGLQYLSDELRYLHWHGYPLKMLPSN-F-TPENLIELNLLYS 522 (1094)
Q Consensus 445 ~~~l~~~~f~~l~~Lr~L~l~~n~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~n 522 (1094)
...+...||.++.+|+.+.+..+ ++ .+....+.-..+|+.+++..+ ++.++.. | ...+|+.+.++.+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~---------~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~ 127 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VR---------EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM 127 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CC---------EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-cc---------CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc
Confidence 45677888999999998888532 32 344444443356777777543 5555543 2 3556666665543
Q ss_pred cccccc-ccCCCCCcCcc-cCCC---------CCCCCCeEEeccCCCCCcccCCcc----CCccEEEeccCCCCccc-cc
Q 001348 523 RIEQLW-KGKKGCKSLRC-FPNN---------IHFRSPISLNFSYCVNFKEFPQIS----GNVRELYLRGTPIEYVP-SS 586 (1094)
Q Consensus 523 ~i~~l~-~~~~~l~~L~~-~~~~---------~~~~~l~~L~Ls~~~~l~~~p~~~----~~L~~L~L~~~~l~~lp-~~ 586 (1094)
+..+. ..+..+..+.. .+.. ..+.+|+.+.+... +..++... .+|+.+.+..+ ++.++ ..
T Consensus 128 -l~~i~~~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~ 203 (394)
T 4fs7_A 128 -LKSIGVEAFKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN-LKIIRDYC 203 (394)
T ss_dssp -CCEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT-CCEECTTT
T ss_pred -eeeecceeeecccccccccCccccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC-ceEeCchh
Confidence 22221 11222222110 0000 01122224444322 11222111 14555544433 33332 23
Q ss_pred cccccccceeecccccccccchhhhhcCCcccEEeccCCcccCccchhhcccCccceeeccCcccccccchhhccCCCcE
Q 001348 587 IDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEILEKMGCLEDIDLEGTAITELPSSIEYLGGLTT 666 (1094)
Q Consensus 587 i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~ 666 (1094)
+.++..|+.+.+..+. ..+........+|+.+.+... ....-...+.++.+|+.+.+..+...--...+..+..|+.
T Consensus 204 F~~~~~L~~i~~~~~~--~~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~ 280 (394)
T 4fs7_A 204 FAECILLENMEFPNSL--YYLGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKK 280 (394)
T ss_dssp TTTCTTCCBCCCCTTC--CEECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCE
T ss_pred hccccccceeecCCCc--eEeehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcceeeccccccccccce
Confidence 4455555555554432 112222223455666665432 1222234566778888888876644433445777888888
Q ss_pred EecCCCCCCCCCCccccCCCcccEEecCCccCccC-CccccCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeCCCCCCC
Q 001348 667 LNLTGCSKLDNLPENLGNLKSLKMLCANESAISQL-PSSITNLNELQVVWCSGCRGLILPPSFSGLSYLTELDLSCCNLI 745 (1094)
Q Consensus 667 L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~-p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~ 745 (1094)
+....... ....+..+.+|+.+.+..+ ++.+ ...|.++.+|+.+.+..+-...-...|.++.+|+.++|..+ ++
T Consensus 281 ~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~~-l~ 355 (394)
T 4fs7_A 281 VIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFPLS-LR 355 (394)
T ss_dssp EEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCEECCCTT-CC
T ss_pred eccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCcccEEhHHhccCCCCCCEEEECcc-cc
Confidence 87765331 1234677889999988755 5555 34678889999999975532222456889999999999876 77
Q ss_pred CCCc-cccCCCCCCeeecCCCCCcccchhhcCCCCCCEE
Q 001348 746 EIPQ-DIGCLSLLRSLDLRKNNFEYLPASMKHLSKLKSL 783 (1094)
Q Consensus 746 ~lp~-~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L 783 (1094)
.+.. .+.++++|+.+.|..+ ++.+...+.++++|+.+
T Consensus 356 ~I~~~aF~~C~~L~~i~lp~~-~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 356 KIGANAFQGCINLKKVELPKR-LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp EECTTTBTTCTTCCEEEEEGG-GGGGGGGBCTTCEEEEE
T ss_pred EehHHHhhCCCCCCEEEECCC-CEEhhheecCCCCCcEE
Confidence 7654 4888999999999754 55555667777777764
No 165
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.65 E-value=4.8e-08 Score=110.69 Aligned_cols=101 Identities=20% Similarity=0.164 Sum_probs=63.4
Q ss_pred EecCCc-cCccCCccccCCCCCcEEEccC-CCCCCCC-CCCCCCCCCCEEeCCCCCCCCCCc-cccCCCCCCeeecCCCC
Q 001348 691 LCANES-AISQLPSSITNLNELQVVWCSG-CRGLILP-PSFSGLSYLTELDLSCCNLIEIPQ-DIGCLSLLRSLDLRKNN 766 (1094)
Q Consensus 691 L~l~~~-~i~~~p~~l~~l~~L~~L~l~~-~~~~~lp-~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~ 766 (1094)
++++++ .++.+|. +..+++|+.|+|++ |....+| ..|.++++|+.|+|++|+|+.+|. .|..+++|+.|+|++|+
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 344444 5555555 55556666666654 5555444 346677777777777777776544 46777777777777777
Q ss_pred CcccchhhcCCCCCCEEEccCCCCCC
Q 001348 767 FEYLPASMKHLSKLKSLDLSCCNMLQ 792 (1094)
Q Consensus 767 l~~lp~~l~~l~~L~~L~L~~~~~l~ 792 (1094)
|+.+|..+.....|+.|+|.+|++..
T Consensus 92 l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 92 LESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp CSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred cceeCHHHcccCCceEEEeeCCCccC
Confidence 77776554333337777777776543
No 166
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.62 E-value=7.4e-07 Score=99.73 Aligned_cols=263 Identities=13% Similarity=0.103 Sum_probs=147.0
Q ss_pred CCCCCCeeehhHHHHHHHhccccC---CCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHH
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIG---LPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVH 164 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~ 164 (1094)
|...+++||++..++++...+..- ....+.|.|+|++|+||||+|+++++.....| .++. .... .....
T Consensus 8 p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~---~~~~-~~~~----~~~~~ 79 (324)
T 1hqc_A 8 PKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL---RVTS-GPAI----EKPGD 79 (324)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE---EEEC-TTTC----CSHHH
T ss_pred cccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE---EEEe-cccc----CChHH
Confidence 556788999999999988887531 12346788999999999999999998764332 2222 1110 11111
Q ss_pred HHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCChH--hHHHHhcCCCCC------------------CCC
Q 001348 165 LRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKFR--QLEYLAGGLDRF------------------GLG 224 (1094)
Q Consensus 165 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~------------------~~g 224 (1094)
+.. .+. ..+ .+..+|+||+++... ..+.+...+... .+.
T Consensus 80 l~~----~l~----------------~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 138 (324)
T 1hqc_A 80 LAA----ILA----------------NSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPR 138 (324)
T ss_dssp HHH----HHT----------------TTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCC
T ss_pred HHH----HHH----------------Hhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCC
Confidence 111 110 001 245688999997642 233332211110 124
Q ss_pred ceEEEEeCChhhh-hhc--CcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHHHHHhhhhcC
Q 001348 225 SRIIVTSRDKQVL-EKY--GVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAIKVLASFFHR 301 (1094)
Q Consensus 225 srIiiTTR~~~v~-~~~--~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg~~L~~ 301 (1094)
.++|.||...... ..+ .....+.++.++.+|..+++...+...... --.+....+++++.|.|-.+..+...+..
T Consensus 139 ~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~l~~~l~~~~~ 216 (324)
T 1hqc_A 139 FTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR--ITEEAALEIGRRSRGTMRVAKRLFRRVRD 216 (324)
T ss_dssp CEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHSCSCHHHHHHHHHHHTT
T ss_pred EEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 5677776644321 111 123589999999999999998876432221 12356688999999999887766544321
Q ss_pred ------C---CHHHHHHHHHHhhcCCCccHHHHHHHhhhcccHHhhhhhcccccccCC--cCHHHHHHHHhCC-Cccccc
Q 001348 302 ------K---SKLDWEIALQNLKQISGPEILAVLKISYDELNWEAKNLFLDIACFFKG--EDINFVTLILDNH-YSVHYG 369 (1094)
Q Consensus 302 ------~---~~~~w~~~l~~l~~~~~~~i~~~L~~sy~~L~~~~k~~fl~~a~f~~~--~~~~~~~~il~~~-~~~~~~ 369 (1094)
. +.+....++..+ ...+..+++.++..+..++....+ .....+...+.-. ......
T Consensus 217 ~a~~~~~~~i~~~~~~~~~~~~------------~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~ 284 (324)
T 1hqc_A 217 FAQVAGEEVITRERALEALAAL------------GLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEV 284 (324)
T ss_dssp TSTTTSCSCCCHHHHHHHHHHH------------TCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHh------------cccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHH
Confidence 1 334444443332 123455677777777665544333 2344444333221 011122
Q ss_pred hhh-hhccCceeEeCCEEEeeHHHH
Q 001348 370 LSV-LVDKSLVRISRNKLEMHDLLQ 393 (1094)
Q Consensus 370 l~~-L~~~sLi~~~~~~~~mHdli~ 393 (1094)
++. +++.++|........+-+...
T Consensus 285 l~~~~i~~~li~~~~~g~~~~~~~~ 309 (324)
T 1hqc_A 285 HEPYLIRQGLLKRTPRGRVPTELAY 309 (324)
T ss_dssp THHHHHHTTSEEEETTEEEECHHHH
T ss_pred HhHHHHHhcchhcCCccceecHHHH
Confidence 333 778899887644444444433
No 167
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.55 E-value=7.3e-07 Score=99.44 Aligned_cols=185 Identities=14% Similarity=0.139 Sum_probs=114.2
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhc-cccceEEeeechhhhccCCChHHHH
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISR-KFESKCFMANVREESEKGGGLVHLR 166 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~~~~~~~~~~l~ 166 (1094)
|...++++|++..++.+.+.+..+ ..+.+.|+|++|+||||+|+++++.+.. .+...+...+....... ..+..+.
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 89 (319)
T 2chq_A 13 PRTLDEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI-DVVRHKI 89 (319)
T ss_dssp CSSGGGSCSCHHHHHHHHTTTTTT--CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCT-TTSSHHH
T ss_pred CCCHHHHhCCHHHHHHHHHHHhCC--CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccCh-HHHHHHH
Confidence 566678999999999999998653 3334889999999999999999997632 22211111111110000 1111111
Q ss_pred HHHHHhhhccCCcccCCCchHHHHHHh-cCCeEEEEEecCCCh--HhHHHHhcCCCCCCCCceEEEEeCChh-hhhh-cC
Q 001348 167 DRLLSQILDESIRIETPYIPHYIRERL-QCMKVFIVLDDVNKF--RQLEYLAGGLDRFGLGSRIIVTSRDKQ-VLEK-YG 241 (1094)
Q Consensus 167 ~~ll~~l~~~~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~~-v~~~-~~ 241 (1094)
..+.. . ..+ .+++.++|+|+++.. +..+.+...+.....+.++|+||.... +... ..
T Consensus 90 ~~~~~----~--------------~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 151 (319)
T 2chq_A 90 KEFAR----T--------------APIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS 151 (319)
T ss_dssp HHHHH----S--------------CCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHT
T ss_pred HHHHh----c--------------CCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHh
Confidence 11110 0 001 246789999999654 445666666665566788888887654 2111 12
Q ss_pred cCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHHHHH
Q 001348 242 VDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAIKVL 295 (1094)
Q Consensus 242 ~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 295 (1094)
....+++.+++.++..+++...+-..... --.+....+++.++|.+..+..+
T Consensus 152 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 152 RCAVFRFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp TCEEEECCCCCHHHHHHHHHHHHHTTCCC--BCHHHHHHHHHTTTTCHHHHHHH
T ss_pred hCeEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 33589999999999999998776432221 12345677888899998765443
No 168
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.49 E-value=4.4e-08 Score=110.81 Aligned_cols=62 Identities=13% Similarity=0.162 Sum_probs=39.2
Q ss_pred CCCCCCEEeCCCCCCCC-CCcc---ccCCCCCCeeecCCCCCcc-----cchhhcCCCCCCEEEccCCCCC
Q 001348 730 GLSYLTELDLSCCNLIE-IPQD---IGCLSLLRSLDLRKNNFEY-----LPASMKHLSKLKSLDLSCCNML 791 (1094)
Q Consensus 730 ~l~~L~~L~Ls~n~l~~-lp~~---l~~l~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~L~~~~~l 791 (1094)
.+++|+.|+|++|.+.+ .+.. ...+++|+.|+|+.|.++. ++..+..+++|+.|+|++|.+.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 46677777777776653 1111 1246677888887777763 4445556777888888777543
No 169
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.47 E-value=1.7e-06 Score=103.15 Aligned_cols=192 Identities=16% Similarity=0.184 Sum_probs=107.9
Q ss_pred CCCCCCeeehhHHHHHHHhccccC---------------CCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeec
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIG---------------LPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANV 152 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~---------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 152 (1094)
|...++++|++..++++.+++... .+..+.+.|+|++|+||||+|+++++... +. .+.+ +.
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~--~~-~i~i-n~ 110 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG--YD-ILEQ-NA 110 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT--CE-EEEE-CT
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC--CC-EEEE-eC
Confidence 666788999999999999998641 01347899999999999999999999772 11 1222 21
Q ss_pred hhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHH--HhcCCeEEEEEecCCChH-----hHHHHhcCCCCCCCCc
Q 001348 153 REESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRE--RLQCMKVFIVLDDVNKFR-----QLEYLAGGLDRFGLGS 225 (1094)
Q Consensus 153 ~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~--~L~~kr~LlVLDdv~~~~-----~~~~l~~~~~~~~~gs 225 (1094)
.. .....+....+........... ......+ ....++.+||+|+++... .+..+..... ..+.
T Consensus 111 s~-----~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~--~~~~ 180 (516)
T 1sxj_A 111 SD-----VRSKTLLNAGVKNALDNMSVVG---YFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCR--KTST 180 (516)
T ss_dssp TS-----CCCHHHHHHTGGGGTTBCCSTT---TTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHH--HCSS
T ss_pred CC-----cchHHHHHHHHHHHhccccHHH---HHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHH--hcCC
Confidence 11 1112222322222221110000 0000100 123578899999995431 1223222211 1234
Q ss_pred eEEEEeCChh---hhhhcCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCc-hHHHHH
Q 001348 226 RIIVTSRDKQ---VLEKYGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNP-LAIKVL 295 (1094)
Q Consensus 226 rIiiTTR~~~---v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlP-Lal~~l 295 (1094)
.||+++.+.. +.........++++.++.++..+.+...+.......+ .+....|++.++|.+ -|+..+
T Consensus 181 ~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~--~~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 181 PLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD--PNVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp CEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC--TTHHHHHHHHTTTCHHHHHHHH
T ss_pred CEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCcHHHHHHHH
Confidence 5666665532 2222234568999999999999999887654222111 123567888899855 444444
No 170
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.46 E-value=3.1e-07 Score=93.82 Aligned_cols=52 Identities=27% Similarity=0.320 Sum_probs=43.6
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhc
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISR 141 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 141 (1094)
+...+.++||+..++++.+.+... ..+.+.|+|++|+||||+|+++++.+..
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred hccccccccchHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 556678999999999999988643 3456789999999999999999997643
No 171
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.45 E-value=1.1e-06 Score=100.29 Aligned_cols=197 Identities=12% Similarity=0.100 Sum_probs=116.3
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHH
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRD 167 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~ 167 (1094)
|...++++|++..++.+...+..+. -...+.|+|++|+||||+|+++++.+....... ...+ ..... ..
T Consensus 12 p~~~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-~~~~--------~~~~~-~~ 80 (373)
T 1jr3_A 12 PQTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-ATPC--------GVCDN-CR 80 (373)
T ss_dssp CCSTTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-SSCC--------SSSHH-HH
T ss_pred CCchhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-CCCC--------cccHH-HH
Confidence 5666789999999999999886432 234788999999999999999998764332110 0000 00000 00
Q ss_pred HHHH----hhhc-cCCcccCCCchHHHHHHh-----cCCeEEEEEecCCCh--HhHHHHhcCCCCCCCCceEEEEeCChh
Q 001348 168 RLLS----QILD-ESIRIETPYIPHYIRERL-----QCMKVFIVLDDVNKF--RQLEYLAGGLDRFGLGSRIIVTSRDKQ 235 (1094)
Q Consensus 168 ~ll~----~l~~-~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~~ 235 (1094)
.+.. .+.. ........+....+.+.+ .+++.++|+||++.. ...+.+...+.....+..+|++|.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 81 EIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 (373)
T ss_dssp HHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGG
T ss_pred HHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 0100 0000 000001111233333333 346789999999653 345555544443445677777776543
Q ss_pred h-hhh-cCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHHHHHhh
Q 001348 236 V-LEK-YGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAIKVLAS 297 (1094)
Q Consensus 236 v-~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg~ 297 (1094)
- ... ......+++..++.++..+++...+-..... --.+....+++.++|.|..+..+..
T Consensus 161 ~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~--~~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 161 KLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA--HEPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred hCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 2 111 2234789999999999999998766322211 1134567889999999988766543
No 172
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.45 E-value=2.4e-06 Score=96.78 Aligned_cols=203 Identities=13% Similarity=0.120 Sum_probs=113.6
Q ss_pred hhHHHHHHHHHHHHhcccccccCCCCCCeeehhHHHHHHHhcccc----------CCCCeEEEEEEecCCCchhhHHHHH
Q 001348 66 PEAKLVDEIVKDILKKLNYFSVSSDFEGLIGLDARIERIKSLLCI----------GLPNIQIMGIWGMGGIGKTTIAGVL 135 (1094)
Q Consensus 66 ~e~~~i~~i~~~v~~~l~~~~~~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v 135 (1094)
.+..+++.+...+..+. ++...++++|.+..+++|.+.+.. .....+.|.|+|++|+|||+||+++
T Consensus 62 ~~~~~~~~i~~~i~~~~----~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ai 137 (357)
T 3d8b_A 62 LEPKMIELIMNEIMDHG----PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCI 137 (357)
T ss_dssp SCHHHHHHHHHHTBCCS----CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHH
T ss_pred CChHHHHHHHhhcccCC----CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHH
Confidence 34455555555544332 245567899999999999887742 1123567899999999999999999
Q ss_pred HHHHhccccceEEeeechhhhccCCCh-HHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCCh------
Q 001348 136 FNQISRKFESKCFMANVREESEKGGGL-VHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKF------ 208 (1094)
Q Consensus 136 ~~~~~~~F~~~~~~~~~~~~~~~~~~~-~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~------ 208 (1094)
++.....| +..+..+......+- ....+. .+...-..++.+|+||+++..
T Consensus 138 a~~~~~~~----~~i~~~~l~~~~~g~~~~~~~~-------------------~~~~a~~~~~~vl~iDEid~l~~~~~~ 194 (357)
T 3d8b_A 138 ASQSGATF----FSISASSLTSKWVGEGEKMVRA-------------------LFAVARCQQPAVIFIDEIDSLLSQRGD 194 (357)
T ss_dssp HHHTTCEE----EEEEGGGGCCSSTTHHHHHHHH-------------------HHHHHHHTCSEEEEEETHHHHTBC---
T ss_pred HHHcCCeE----EEEehHHhhccccchHHHHHHH-------------------HHHHHHhcCCeEEEEeCchhhhccCCC
Confidence 98764322 222222211110110 011111 111112346789999999432
Q ss_pred -------HhHHHHhcCCC----CCCCCceEEEEeCChhhhh-h--cCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchH
Q 001348 209 -------RQLEYLAGGLD----RFGLGSRIIVTSRDKQVLE-K--YGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDL 274 (1094)
Q Consensus 209 -------~~~~~l~~~~~----~~~~gsrIiiTTR~~~v~~-~--~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~ 274 (1094)
..+..++..+. ....+..||.||.....+. . -.....+.++..+.++..+++...+-.....- .
T Consensus 195 ~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l--~ 272 (357)
T 3d8b_A 195 GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCL--S 272 (357)
T ss_dssp ---CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCC--C
T ss_pred CcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCc--c
Confidence 11222222211 1223445666776543211 1 12346788999999999999887763322111 1
Q ss_pred HHHHHHHHHHhCC-CchHHHHHhh
Q 001348 275 MVISGRVVDYARG-NPLAIKVLAS 297 (1094)
Q Consensus 275 ~~~~~~i~~~~~G-lPLal~~lg~ 297 (1094)
.+....+++.+.| .+-.+..+..
T Consensus 273 ~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 273 EEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 2455678888888 4555655544
No 173
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.43 E-value=1.1e-07 Score=107.40 Aligned_cols=159 Identities=14% Similarity=0.166 Sum_probs=74.9
Q ss_pred hhhhhcCCcccEEeccCCcc---------cCccchhhcccCccceeeccCcccccccchhhccCCCcEEecCCCCCCCCC
Q 001348 608 STSICKLKSLLKLCLDNCSK---------LESFPEILEKMGCLEDIDLEGTAITELPSSIEYLGGLTTLNLTGCSKLDNL 678 (1094)
Q Consensus 608 p~~i~~l~~L~~L~L~~~~~---------~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l 678 (1094)
..++.++++|+.|.+.+... .+.++..+..+++|+.|.|+++.-..++. + .+++|++|+|..|.+....
T Consensus 132 ~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~ 209 (362)
T 2ra8_A 132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSV 209 (362)
T ss_dssp HTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHH
T ss_pred HHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHH
Confidence 34456678888888765321 11244445556666666666552123333 2 2556666666655433222
Q ss_pred Ccccc--CCCcccEEecCC--cc------CccCCccc--cCCCCCcEEEccCCCCCC-CCCC---CCCCCCCCEEeCCCC
Q 001348 679 PENLG--NLKSLKMLCANE--SA------ISQLPSSI--TNLNELQVVWCSGCRGLI-LPPS---FSGLSYLTELDLSCC 742 (1094)
Q Consensus 679 p~~l~--~l~~L~~L~l~~--~~------i~~~p~~l--~~l~~L~~L~l~~~~~~~-lp~~---l~~l~~L~~L~Ls~n 742 (1094)
...+. .+++|+.|+|+. +. +..+...+ ..+++|+.|.+.+|.... .+.. ...+++|++|+|+.|
T Consensus 210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n 289 (362)
T 2ra8_A 210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG 289 (362)
T ss_dssp HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS
T ss_pred HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC
Confidence 12222 455666665532 11 11111111 234566666665554321 0000 123455666666665
Q ss_pred CCCC-----CCccccCCCCCCeeecCCCCCc
Q 001348 743 NLIE-----IPQDIGCLSLLRSLDLRKNNFE 768 (1094)
Q Consensus 743 ~l~~-----lp~~l~~l~~L~~L~L~~n~l~ 768 (1094)
.+.+ ++..+..+++|+.|+|++|.++
T Consensus 290 ~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 290 VLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 5553 3333344556666666655554
No 174
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.42 E-value=4.7e-07 Score=96.42 Aligned_cols=174 Identities=13% Similarity=0.122 Sum_probs=100.9
Q ss_pred CCCCCeeehh---HHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHH
Q 001348 89 SDFEGLIGLD---ARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHL 165 (1094)
Q Consensus 89 ~~~~~~vGr~---~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l 165 (1094)
...++++|.+ ..++.+..+.... ..+.+.|+|++|+||||+|+++++..........|+.. .+.... +
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~-~~~~~~---~--- 95 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPL-GIHASI---S--- 95 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEG-GGGGGS---C---
T ss_pred CChhhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH-HHHHHH---H---
Confidence 4557788743 5566666666432 45688899999999999999999987655334445432 221111 0
Q ss_pred HHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCChHh----HHHHhcCCCCC-CCCc-eEEEEeCChh----
Q 001348 166 RDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKFRQ----LEYLAGGLDRF-GLGS-RIIVTSRDKQ---- 235 (1094)
Q Consensus 166 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~----~~~l~~~~~~~-~~gs-rIiiTTR~~~---- 235 (1094)
.+. . +.+ .++.+||+||++.... .+.+...+... ..+. +||+||+...
T Consensus 96 -----~~~------------~----~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~ 153 (242)
T 3bos_A 96 -----TAL------------L----EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAG 153 (242)
T ss_dssp -----GGG------------G----TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTT
T ss_pred -----HHH------------H----Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHH
Confidence 000 0 011 2456889999954321 22222211110 1122 4888876432
Q ss_pred -----hhhhcCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHHHHH
Q 001348 236 -----VLEKYGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAIKVL 295 (1094)
Q Consensus 236 -----v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 295 (1094)
+...+.....++++.++.++..+++...+...... --.+....+++.++|.+-.+..+
T Consensus 154 ~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 154 FVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQ--LPEDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp CCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCC--CCHHHHHHHHHHTTTCHHHHHHH
T ss_pred HhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHccCCHHHHHHH
Confidence 11112223789999999999999998876432221 12355677888888887665544
No 175
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.42 E-value=2e-06 Score=94.20 Aligned_cols=180 Identities=19% Similarity=0.241 Sum_probs=103.9
Q ss_pred CCCCCCeeehhHHHHHHHhccccC-----------CCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhh
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIG-----------LPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREES 156 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~ 156 (1094)
....++++|++..+++|.+.+... ....+.+.|+|++|+||||||+++++.....| +.....+..
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~----~~v~~~~~~ 88 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATF----IRVVGSELV 88 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEE----EEEEGGGGC
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE----EEEehHHHH
Confidence 445678999999999998887431 12345689999999999999999998764432 111111111
Q ss_pred ccCCC-hHHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCCh----------------HhHHHHhcCCC
Q 001348 157 EKGGG-LVHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKF----------------RQLEYLAGGLD 219 (1094)
Q Consensus 157 ~~~~~-~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~----------------~~~~~l~~~~~ 219 (1094)
....+ ..... ...+......+..+|+||+++.. ..+..+.....
T Consensus 89 ~~~~~~~~~~~-------------------~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~ 149 (285)
T 3h4m_A 89 KKFIGEGASLV-------------------KDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMD 149 (285)
T ss_dssp CCSTTHHHHHH-------------------HHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHH
T ss_pred HhccchHHHHH-------------------HHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhh
Confidence 11011 00111 11122222345689999999553 12223332221
Q ss_pred --CCCCCceEEEEeCChhhhh-----hcCcCeEEEccCCCHHHHHHHHHhhcccCCCC-CchHHHHHHHHHHHhCCC-ch
Q 001348 220 --RFGLGSRIIVTSRDKQVLE-----KYGVDHIYEVEELNNIEALELFCKYAFRQNHH-PQDLMVISGRVVDYARGN-PL 290 (1094)
Q Consensus 220 --~~~~gsrIiiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~-~~~~~~~~~~i~~~~~Gl-PL 290 (1094)
....+..||.||....... .......+.++.++.++..+++..++...... ..++ ..++..+.|. |-
T Consensus 150 ~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~----~~l~~~~~g~~~~ 225 (285)
T 3h4m_A 150 GFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNL----EEIAKMTEGCVGA 225 (285)
T ss_dssp TTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCH----HHHHHHCTTCCHH
T ss_pred CCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCH----HHHHHHcCCCCHH
Confidence 1233567788887554322 11234589999999999999998886443222 2223 4566666663 43
Q ss_pred HHHH
Q 001348 291 AIKV 294 (1094)
Q Consensus 291 al~~ 294 (1094)
.+..
T Consensus 226 ~i~~ 229 (285)
T 3h4m_A 226 ELKA 229 (285)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 176
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.39 E-value=9.1e-07 Score=97.15 Aligned_cols=164 Identities=10% Similarity=0.028 Sum_probs=98.6
Q ss_pred CeeehhHHHHHHHhcccc--CCCCeEEEEEEecCCCchhhHHHHHHHHHhcccc-------ceEEeeechhhhccCCChH
Q 001348 93 GLIGLDARIERIKSLLCI--GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFE-------SKCFMANVREESEKGGGLV 163 (1094)
Q Consensus 93 ~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-------~~~~~~~~~~~~~~~~~~~ 163 (1094)
.+.||++++++|...|.. ..+....+.|+|++|.|||++|++|++++..... ..+++.+..- .+..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~-----~t~~ 95 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALEL-----AGMD 95 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCC-----C--H
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecccc-----CCHH
Confidence 388999999999988754 2345678899999999999999999998754321 1334433221 3345
Q ss_pred HHHHHHHHhhhccCCcccCCCchHHHHHH---h---cCCeEEEEEecCCChHhHHHHhcCCCCC-CCCce--EEEEeCCh
Q 001348 164 HLRDRLLSQILDESIRIETPYIPHYIRER---L---QCMKVFIVLDDVNKFRQLEYLAGGLDRF-GLGSR--IIVTSRDK 234 (1094)
Q Consensus 164 ~l~~~ll~~l~~~~~~~~~~~~~~~l~~~---L---~~kr~LlVLDdv~~~~~~~~l~~~~~~~-~~gsr--IiiTTR~~ 234 (1094)
.+...++.++.+..... ......+.+. + .++++++|||+++...+-+.+...+.|. ...++ ||.++.+.
T Consensus 96 ~~~~~I~~~L~g~~~~~--~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~ 173 (318)
T 3te6_A 96 ALYEKIWFAISKENLCG--DISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHN 173 (318)
T ss_dssp HHHHHHHHHHSCCC--C--CCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSS
T ss_pred HHHHHHHHHhcCCCCCc--hHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCc
Confidence 67777777776543221 1112333332 2 4568999999997753222222211111 12332 33334332
Q ss_pred hh----h-----hhcCcCeEEEccCCCHHHHHHHHHhhc
Q 001348 235 QV----L-----EKYGVDHIYEVEELNNIEALELFCKYA 264 (1094)
Q Consensus 235 ~v----~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~a 264 (1094)
+. + ..+ ....+..++.+.+|-.+++.+++
T Consensus 174 d~~~~~L~~~v~SR~-~~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 174 VTIREQINIMPSLKA-HFTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp CCCHHHHHTCHHHHT-TEEEEECCCCCHHHHHHHHHHHH
T ss_pred ccchhhcchhhhccC-CceEEEeCCCCHHHHHHHHHHHH
Confidence 21 1 122 12578999999999999988776
No 177
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.38 E-value=1e-06 Score=102.60 Aligned_cols=181 Identities=14% Similarity=0.189 Sum_probs=104.2
Q ss_pred CCCCee-ehhHH--HHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccce--EEeeechhhhccCCChHH
Q 001348 90 DFEGLI-GLDAR--IERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESK--CFMANVREESEKGGGLVH 164 (1094)
Q Consensus 90 ~~~~~v-Gr~~~--~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~--~~~~~~~~~~~~~~~~~~ 164 (1094)
..+.|| |.... ...+........ ....+.|+|++|+||||||+++++.+...+... +++.. ..
T Consensus 103 tfd~fv~g~~n~~a~~~~~~~a~~~~-~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~-----------~~ 170 (440)
T 2z4s_A 103 TFENFVVGPGNSFAYHAALEVAKHPG-RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS-----------EK 170 (440)
T ss_dssp SGGGCCCCTTTHHHHHHHHHHHHSTT-SSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH-----------HH
T ss_pred ChhhcCCCCchHHHHHHHHHHHhCCC-CCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH-----------HH
Confidence 445676 64443 333344333222 266889999999999999999999887665433 33321 12
Q ss_pred HHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCChH----hHHHHhcCCCC-CCCCceEEEEeCCh-----
Q 001348 165 LRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKFR----QLEYLAGGLDR-FGLGSRIIVTSRDK----- 234 (1094)
Q Consensus 165 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----~~~~l~~~~~~-~~~gsrIiiTTR~~----- 234 (1094)
+..++...+... ....+.+.++.+.-+|+|||++... ..+.+...+.. ...|..||+||...
T Consensus 171 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~ 242 (440)
T 2z4s_A 171 FLNDLVDSMKEG--------KLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLS 242 (440)
T ss_dssp HHHHHHHHHHTT--------CHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCS
T ss_pred HHHHHHHHHHcc--------cHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHH
Confidence 223333333211 1334445555466789999995432 22333322211 23577899998763
Q ss_pred ----hhhhhcCcCeEEEccCCCHHHHHHHHHhhcccCCC-CCchHHHHHHHHHHHhCCCchHHH
Q 001348 235 ----QVLEKYGVDHIYEVEELNNIEALELFCKYAFRQNH-HPQDLMVISGRVVDYARGNPLAIK 293 (1094)
Q Consensus 235 ----~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~-~~~~~~~~~~~i~~~~~GlPLal~ 293 (1094)
.+...+....++.++.++.++..+++.+.+-.... .++ +....|++.+.|.+-.+.
T Consensus 243 ~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 243 EFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPE---EVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp SCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHCCSCHHHHH
T ss_pred HHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHH
Confidence 12222323357889999999999999887642221 111 234567778888775543
No 178
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.37 E-value=6.3e-06 Score=90.85 Aligned_cols=199 Identities=17% Similarity=0.156 Sum_probs=111.9
Q ss_pred HHHHHHHhcccccccCCCCCCeeehhHHHHHHHhccccC----------CCCeEEEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 73 EIVKDILKKLNYFSVSSDFEGLIGLDARIERIKSLLCIG----------LPNIQIMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 73 ~i~~~v~~~l~~~~~~~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
++++.+...+....++...++++|.+..++.+.+.+... ....+.|.|+|++|+||||+|+++++.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~ 81 (297)
T 3b9p_A 2 KLVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSAT 81 (297)
T ss_dssp CHHHHHHTTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 355666666655443556688999999999998877321 1234678999999999999999999876433
Q ss_pred ccceEEeeechhhhccC-CChHHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCCh-------------
Q 001348 143 FESKCFMANVREESEKG-GGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKF------------- 208 (1094)
Q Consensus 143 F~~~~~~~~~~~~~~~~-~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~------------- 208 (1094)
| +.+. ..+..... .......+.+ +......++.+|++|+++..
T Consensus 82 ~---~~i~-~~~l~~~~~~~~~~~~~~~-------------------~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~ 138 (297)
T 3b9p_A 82 F---LNIS-AASLTSKYVGDGEKLVRAL-------------------FAVARHMQPSIIFIDEVDSLLSERSSSEHEASR 138 (297)
T ss_dssp E---EEEE-STTTSSSSCSCHHHHHHHH-------------------HHHHHHTCSEEEEEETGGGTSBCC-----CCSH
T ss_pred e---EEee-HHHHhhcccchHHHHHHHH-------------------HHHHHHcCCcEEEeccHHHhccccccCcchHHH
Confidence 2 1121 11111110 1111111111 11122346788999999543
Q ss_pred HhHHHHhc---CCCC--CCCCceEEEEeCChhhhhh---cCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHH
Q 001348 209 RQLEYLAG---GLDR--FGLGSRIIVTSRDKQVLEK---YGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGR 280 (1094)
Q Consensus 209 ~~~~~l~~---~~~~--~~~gsrIiiTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~ 280 (1094)
.....++. ..+. .+.+..||.||.....+.. -.....+.++..+.++..+++...+-...... ..+....
T Consensus 139 ~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~--~~~~~~~ 216 (297)
T 3b9p_A 139 RLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPL--DTEALRR 216 (297)
T ss_dssp HHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCS--CHHHHHH
T ss_pred HHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCC--CHHHHHH
Confidence 11112221 1111 1234567777775432111 02346788888899998888887663322211 1234567
Q ss_pred HHHHhCCCch-HHHHHh
Q 001348 281 VVDYARGNPL-AIKVLA 296 (1094)
Q Consensus 281 i~~~~~GlPL-al~~lg 296 (1094)
+++.+.|.+- ++..+.
T Consensus 217 la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 217 LAKITDGYSGSDLTALA 233 (297)
T ss_dssp HHHHTTTCCHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHH
Confidence 8888888875 554444
No 179
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.35 E-value=7.8e-06 Score=88.86 Aligned_cols=169 Identities=15% Similarity=0.130 Sum_probs=91.4
Q ss_pred CCeeehhHHHHHHHh-------cccc-CCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChH
Q 001348 92 EGLIGLDARIERIKS-------LLCI-GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLV 163 (1094)
Q Consensus 92 ~~~vGr~~~~~~l~~-------~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~ 163 (1094)
..++|....++++.. .+.. .....+.|.|+|++|+|||++|+++++.....| +.+........ ....
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~---~~i~~~~~~~g--~~~~ 107 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPF---IKICSPDKMIG--FSET 107 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSE---EEEECGGGCTT--CCHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCE---EEEeCHHHhcC--CchH
Confidence 457777766655555 2211 234578899999999999999999999754322 12221111000 0000
Q ss_pred HHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCCh------------HhHHHHhc---CCCCCCCCceEE
Q 001348 164 HLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKF------------RQLEYLAG---GLDRFGLGSRII 228 (1094)
Q Consensus 164 ~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~------------~~~~~l~~---~~~~~~~gsrIi 228 (1094)
..... + ...+......+..+|+||+++.. ..++.+.. .....+....||
T Consensus 108 ~~~~~-~---------------~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii 171 (272)
T 1d2n_A 108 AKCQA-M---------------KKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLII 171 (272)
T ss_dssp HHHHH-H---------------HHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEE
T ss_pred HHHHH-H---------------HHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEE
Confidence 00000 0 11222233456889999998543 12233332 222223345577
Q ss_pred EEeCChhhhhhc----CcCeEEEccCCCH-HHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCC
Q 001348 229 VTSRDKQVLEKY----GVDHIYEVEELNN-IEALELFCKYAFRQNHHPQDLMVISGRVVDYARGN 288 (1094)
Q Consensus 229 iTTR~~~v~~~~----~~~~~~~l~~L~~-~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl 288 (1094)
.||.....+... .....+.++.++. ++..+++.... .. . .+....+++.+.|.
T Consensus 172 ~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~---~~-~---~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 172 GTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG---NF-K---DKERTTIAQQVKGK 229 (272)
T ss_dssp EEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT---CS-C---HHHHHHHHHHHTTS
T ss_pred EecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC---CC-C---HHHHHHHHHHhcCC
Confidence 788877554431 1246789999988 55556555421 11 1 23456777788773
No 180
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.35 E-value=4.1e-05 Score=88.07 Aligned_cols=107 Identities=15% Similarity=0.179 Sum_probs=66.0
Q ss_pred cccCCCcccEEecCCccCccCCccccCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeCCCCCCCCCCc-cccCCCCCCe
Q 001348 681 NLGNLKSLKMLCANESAISQLPSSITNLNELQVVWCSGCRGLILPPSFSGLSYLTELDLSCCNLIEIPQ-DIGCLSLLRS 759 (1094)
Q Consensus 681 ~l~~l~~L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~ 759 (1094)
.|.++..|+.+.+..+...--...+.++++|+.+.+...-...-...|.++.+|+.++|..+ ++.|.. .|.++.+|+.
T Consensus 260 aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~ 338 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLER 338 (394)
T ss_dssp TTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred eeeecccccEEecccccceecCcccccccccccccCCCcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCE
Confidence 35556666666665443322234556667777777653322222335777788888888653 555543 3677788888
Q ss_pred eecCCCCCcccch-hhcCCCCCCEEEccCCC
Q 001348 760 LDLRKNNFEYLPA-SMKHLSKLKSLDLSCCN 789 (1094)
Q Consensus 760 L~L~~n~l~~lp~-~l~~l~~L~~L~L~~~~ 789 (1094)
+.|.. +++.+.. .+.++++|+.+++.++.
T Consensus 339 i~ip~-sv~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 339 IAIPS-SVTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp EEECT-TCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred EEECc-ccCEEhHhHhhCCCCCCEEEECCce
Confidence 88854 3666653 57788888888887653
No 181
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.34 E-value=7.3e-06 Score=91.45 Aligned_cols=184 Identities=13% Similarity=0.074 Sum_probs=104.3
Q ss_pred CCCCCCeeehhHHHHHHHhccc----------cCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhc
Q 001348 88 SSDFEGLIGLDARIERIKSLLC----------IGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESE 157 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~ 157 (1094)
....++++|.+..+++|.+.+. ......+-|.|+|++|+|||+||+++++.....| +..+..+...
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~----~~v~~~~l~~ 89 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF----FSVSSSDLVS 89 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEE----EEEEHHHHHT
T ss_pred CCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCE----EEEchHHHhh
Confidence 4455789999999999988772 1122346789999999999999999999764432 2222211111
Q ss_pred cCC-ChHHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCChH-------------hHHHHhcCC---CC
Q 001348 158 KGG-GLVHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKFR-------------QLEYLAGGL---DR 220 (1094)
Q Consensus 158 ~~~-~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-------------~~~~l~~~~---~~ 220 (1094)
... ......+. .....-..+..+|+||+++... ....++..+ ..
T Consensus 90 ~~~g~~~~~~~~-------------------~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 150 (322)
T 3eie_A 90 KWMGESEKLVKQ-------------------LFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGN 150 (322)
T ss_dssp TTGGGHHHHHHH-------------------HHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGT
T ss_pred cccchHHHHHHH-------------------HHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccc
Confidence 100 00111111 1111223466899999996431 122232222 12
Q ss_pred CCCCceEEEEeCChhhhhh---cCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCC-chHHHHHh
Q 001348 221 FGLGSRIIVTSRDKQVLEK---YGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGN-PLAIKVLA 296 (1094)
Q Consensus 221 ~~~gsrIiiTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~lg 296 (1094)
...+..||.||.....+.. -.....+.++..+.++..+++..++........ ......+++.+.|. +-.|..+.
T Consensus 151 ~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 151 DSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLT--KEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp SCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC--HHHHHHHHHTTTTCCHHHHHHHH
T ss_pred cCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC--HHHHHHHHHHcCCCCHHHHHHHH
Confidence 2345566667765433211 124567889999999999999988743322111 23345677777764 43444433
No 182
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.32 E-value=6.1e-06 Score=89.05 Aligned_cols=184 Identities=17% Similarity=0.179 Sum_probs=100.9
Q ss_pred CCCCCeeehhHHHHHHHhcccc----------CCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhcc
Q 001348 89 SDFEGLIGLDARIERIKSLLCI----------GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEK 158 (1094)
Q Consensus 89 ~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 158 (1094)
...++++|.+..+++|.+++.. +....+.|.|+|++|+|||++|+++++.....| +.+ +.......
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~~-~~~~~~~~ 78 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPF---LAM-AGAEFVEV 78 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCE---EEE-ETTTTSSS
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE---EEe-chHHHHhh
Confidence 3456789999888888766531 112345688999999999999999999764432 122 21111111
Q ss_pred CCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCCh-----------------HhHHHHhcCCCCC
Q 001348 159 GGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKF-----------------RQLEYLAGGLDRF 221 (1094)
Q Consensus 159 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-----------------~~~~~l~~~~~~~ 221 (1094)
..+.. ...+ ...+.........+|+||+++.. ..+..+.......
T Consensus 79 ~~~~~---~~~~---------------~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 140 (262)
T 2qz4_A 79 IGGLG---AARV---------------RSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGM 140 (262)
T ss_dssp STTHH---HHHH---------------HHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTC
T ss_pred ccChh---HHHH---------------HHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCc
Confidence 00100 0000 11122222345789999999764 1123333322211
Q ss_pred --CCCceEEEEeCChhhhh-hc----CcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCch-HHH
Q 001348 222 --GLGSRIIVTSRDKQVLE-KY----GVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPL-AIK 293 (1094)
Q Consensus 222 --~~gsrIiiTTR~~~v~~-~~----~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL-al~ 293 (1094)
..+..||.||.....+. .. ..+..+.++..+.++..+++..++..... ..........+++.+.|.+- .+.
T Consensus 141 ~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-~~~~~~~~~~l~~~~~g~~~~~l~ 219 (262)
T 2qz4_A 141 GTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL-TQSSTFYSQRLAELTPGFSGADIA 219 (262)
T ss_dssp CTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC-CBTHHHHHHHHHHTCTTCCHHHHH
T ss_pred CCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC-CcchhhHHHHHHHHCCCCCHHHHH
Confidence 23456777776554322 11 23478889999999999999887643222 11222234667777777654 344
Q ss_pred HH
Q 001348 294 VL 295 (1094)
Q Consensus 294 ~l 295 (1094)
.+
T Consensus 220 ~l 221 (262)
T 2qz4_A 220 NI 221 (262)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 183
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.30 E-value=1.1e-05 Score=91.02 Aligned_cols=184 Identities=13% Similarity=0.089 Sum_probs=102.6
Q ss_pred CCCCCCeeehhHHHHHHHhcccc----------CCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhc
Q 001348 88 SSDFEGLIGLDARIERIKSLLCI----------GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESE 157 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~ 157 (1094)
+...++++|.+..+++|.+.+.. .....+-|.|+|++|+|||+||+++++.....| +..+..+...
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~----~~v~~~~l~~ 122 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF----FSVSSSDLVS 122 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEE----EEEEHHHHHS
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEeeHHHHhh
Confidence 44567899999999999887621 112235688999999999999999999874332 2222111111
Q ss_pred cCC-ChHHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCChH-------------hHHHHhcCCC---C
Q 001348 158 KGG-GLVHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKFR-------------QLEYLAGGLD---R 220 (1094)
Q Consensus 158 ~~~-~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-------------~~~~l~~~~~---~ 220 (1094)
... ...... ...+...-..+..+|+||+++... ....++..+. .
T Consensus 123 ~~~g~~~~~~-------------------~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~ 183 (355)
T 2qp9_X 123 KWMGESEKLV-------------------KQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGN 183 (355)
T ss_dssp CC---CHHHH-------------------HHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC-
T ss_pred hhcchHHHHH-------------------HHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccc
Confidence 000 000111 111111223467899999996532 1222322221 1
Q ss_pred CCCCceEEEEeCChhhhh-h--cCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCC-chHHHHHh
Q 001348 221 FGLGSRIIVTSRDKQVLE-K--YGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGN-PLAIKVLA 296 (1094)
Q Consensus 221 ~~~gsrIiiTTR~~~v~~-~--~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~lg 296 (1094)
...+..||.||.....+. . -.....+.++..+.++..+++..++........ ......|++.+.|. +-.|..+.
T Consensus 184 ~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~--~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 184 DSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLT--KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp --CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC--HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred cCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHcCCCCHHHHHHHH
Confidence 233556666776443211 1 135578899999999999999887643221111 23346777788774 43444443
No 184
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.29 E-value=8e-06 Score=91.86 Aligned_cols=254 Identities=14% Similarity=0.161 Sum_probs=137.9
Q ss_pred CCCCCCeeehhHHHHHHHhccccC---CCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHH
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIG---LPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVH 164 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~ 164 (1094)
|...++++|++..++++..++... ......|.|+|++|+|||++|+++++.....| +.+. .... .....
T Consensus 25 p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~---~~~~-~~~~----~~~~~ 96 (338)
T 3pfi_A 25 PSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI---KTTA-APMI----EKSGD 96 (338)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCE---EEEE-GGGC----CSHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe---EEec-chhc----cchhH
Confidence 556778999999999999888642 23445689999999999999999988764443 1121 1110 11111
Q ss_pred HHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCCh--HhHHHHhcCCCCC------------------CCC
Q 001348 165 LRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKF--RQLEYLAGGLDRF------------------GLG 224 (1094)
Q Consensus 165 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~------------------~~g 224 (1094)
+. ..+ . . ..+..+|+||+++.. .....+...+... .++
T Consensus 97 ~~-~~~-------------------~-~-~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~ 154 (338)
T 3pfi_A 97 LA-AIL-------------------T-N-LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPK 154 (338)
T ss_dssp HH-HHH-------------------H-T-CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCC
T ss_pred HH-HHH-------------------H-h-ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCC
Confidence 11 111 0 1 135678899999654 2222332211110 113
Q ss_pred ceEEEEeCChhhhh-h-c-CcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHHHHHhhhh--
Q 001348 225 SRIIVTSRDKQVLE-K-Y-GVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAIKVLASFF-- 299 (1094)
Q Consensus 225 srIiiTTR~~~v~~-~-~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg~~L-- 299 (1094)
.++|.+|....... . . .....+.++.++.++..+++...+-.... .--.+....+++.+.|.|-.+..+...+
T Consensus 155 ~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~--~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~ 232 (338)
T 3pfi_A 155 FTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK--TCEEKAALEIAKRSRSTPRIALRLLKRVRD 232 (338)
T ss_dssp CEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC--EECHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred eEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45666665533211 1 1 23478999999999999999887643221 1223456778888999986554443321
Q ss_pred ----cCC---CHHHHHHHHHHhhcCCCccHHHHHHHhhhcccHHhhhhhcccccccCC--cCHHHHHHHHhC-CCccccc
Q 001348 300 ----HRK---SKLDWEIALQNLKQISGPEILAVLKISYDELNWEAKNLFLDIACFFKG--EDINFVTLILDN-HYSVHYG 369 (1094)
Q Consensus 300 ----~~~---~~~~w~~~l~~l~~~~~~~i~~~L~~sy~~L~~~~k~~fl~~a~f~~~--~~~~~~~~il~~-~~~~~~~ 369 (1094)
.+. +.+....++..+ ..+...++..++..+..++-. .+ .....+...+.- .-.....
T Consensus 233 ~a~~~~~~~i~~~~~~~~~~~~------------~~~~~~l~~~e~~~l~~l~~~-~~~~~~~~~~a~~lg~~~~tl~~~ 299 (338)
T 3pfi_A 233 FADVNDEEIITEKRANEALNSL------------GVNELGFDAMDLRYLELLTAA-KQKPIGLASIAAALSEDENTIEDV 299 (338)
T ss_dssp HHHHTTCSEECHHHHHHHHHHH------------TCCTTCCCHHHHHHHHHHHHS-CSCCBCHHHHHHHTTCCHHHHHHT
T ss_pred HHHhhcCCccCHHHHHHHHHHh------------CCcccCCCHHHHHHHHHHHHh-cCCCchHHHHHHHhCCCHHHHHHH
Confidence 111 233333333322 222334454445555444443 22 224444443322 1112223
Q ss_pred hh-hhhccCceeEe-CCEE
Q 001348 370 LS-VLVDKSLVRIS-RNKL 386 (1094)
Q Consensus 370 l~-~L~~~sLi~~~-~~~~ 386 (1094)
++ .|++.++|... .+++
T Consensus 300 l~~~l~~~gli~~~~~g~~ 318 (338)
T 3pfi_A 300 IEPYLLANGYIERTAKGRI 318 (338)
T ss_dssp THHHHHHTTSEEEETTEEE
T ss_pred HhHHHHHcCceecCCCccc
Confidence 44 78889999877 4444
No 185
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.26 E-value=9.6e-06 Score=91.74 Aligned_cols=196 Identities=14% Similarity=0.169 Sum_probs=112.8
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhc--cccceEEeeechhhhccCCChHHH
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISR--KFESKCFMANVREESEKGGGLVHL 165 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~F~~~~~~~~~~~~~~~~~~~~~l 165 (1094)
|...+.++|++..++.+...+..+. ...+.|+|++|+||||+|+++++.+.. .+...+.-.+... . .+...+
T Consensus 33 p~~~~~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~---~-~~~~~~ 106 (353)
T 1sxj_D 33 PKNLDEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASD---E-RGISIV 106 (353)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSS---C-CCHHHH
T ss_pred CCCHHHhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccc---c-cchHHH
Confidence 6677889999999999999986543 223889999999999999999987642 2222222111111 1 222222
Q ss_pred HHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCCh--HhHHHHhcCCCCCCCCceEEEEeCChh-hhhh-cC
Q 001348 166 RDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKF--RQLEYLAGGLDRFGLGSRIIVTSRDKQ-VLEK-YG 241 (1094)
Q Consensus 166 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~~-v~~~-~~ 241 (1094)
. +.+......... .. ........-..++-+|++|+++.. ...+.+...+.......++|++|.... +... ..
T Consensus 107 ~-~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~s 182 (353)
T 1sxj_D 107 R-EKVKNFARLTVS-KP--SKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLAS 182 (353)
T ss_dssp T-THHHHHHHSCCC-CC--CTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH
T ss_pred H-HHHHHHhhhccc-cc--chhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhc
Confidence 2 222221111000 00 000111111245679999998653 333444433333344567787775543 2111 11
Q ss_pred cCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHHHHH
Q 001348 242 VDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAIKVL 295 (1094)
Q Consensus 242 ~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 295 (1094)
....+++.+++.++..+.+...+-.....- -.+..+.++++++|.|-.+..+
T Consensus 183 R~~~i~~~~~~~~~~~~~l~~~~~~~~~~i--~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 183 QCSKFRFKALDASNAIDRLRFISEQENVKC--DDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp HSEEEECCCCCHHHHHHHHHHHHHTTTCCC--CHHHHHHHHHHTSSCHHHHHHH
T ss_pred cCceEEeCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCCHHHHHHH
Confidence 225789999999999999988764322211 2356678999999998765444
No 186
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.22 E-value=2.1e-05 Score=87.52 Aligned_cols=185 Identities=13% Similarity=0.117 Sum_probs=101.8
Q ss_pred CCCCCCeeehhHHHHHHHhcccc---------C-CCCeEEEEEEecCCCchhhHHHHHHHHH-hccccceEEeeechhhh
Q 001348 88 SSDFEGLIGLDARIERIKSLLCI---------G-LPNIQIMGIWGMGGIGKTTIAGVLFNQI-SRKFESKCFMANVREES 156 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~---------~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~F~~~~~~~~~~~~~ 156 (1094)
....++++|.+..+++|.+.+.. + ....+-|.|+|++|+|||+||+++++.. ...| +..+..+..
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~----~~i~~~~l~ 83 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTF----FSISSSDLV 83 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEE----EEEECCSSC
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcE----EEEEhHHHH
Confidence 33456789999888888776521 1 1234678999999999999999999976 2222 111111111
Q ss_pred ccC-CChHHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCChH-------------hHHHHhcCCC---
Q 001348 157 EKG-GGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKFR-------------QLEYLAGGLD--- 219 (1094)
Q Consensus 157 ~~~-~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-------------~~~~l~~~~~--- 219 (1094)
... .......+.+ ....-..++.+|++|+++... ....++..+.
T Consensus 84 ~~~~g~~~~~~~~l-------------------f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~ 144 (322)
T 1xwi_A 84 SKWLGESEKLVKNL-------------------FQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG 144 (322)
T ss_dssp CSSCCSCHHHHHHH-------------------HHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSS
T ss_pred hhhhhHHHHHHHHH-------------------HHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccc
Confidence 000 0011111111 111123467899999997541 1222222221
Q ss_pred CCCCCceEEEEeCChhhhh-h--cCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCC-chHHHHH
Q 001348 220 RFGLGSRIIVTSRDKQVLE-K--YGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGN-PLAIKVL 295 (1094)
Q Consensus 220 ~~~~gsrIiiTTR~~~v~~-~--~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~l 295 (1094)
....+..||.||....... . -..+..+.++..+.++..+++..++-...... -......+++.+.|. +-.|..+
T Consensus 145 ~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l--~~~~l~~la~~t~G~sgadl~~l 222 (322)
T 1xwi_A 145 VDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSL--TEADFRELGRKTDGYSGADISII 222 (322)
T ss_dssp SCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCC--CHHHHHHHHHTCTTCCHHHHHHH
T ss_pred ccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHcCCCCHHHHHHH
Confidence 1233455665665443211 1 13457889999999999999988763322111 123446777777776 3335444
Q ss_pred hh
Q 001348 296 AS 297 (1094)
Q Consensus 296 g~ 297 (1094)
..
T Consensus 223 ~~ 224 (322)
T 1xwi_A 223 VR 224 (322)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 187
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.21 E-value=5.9e-06 Score=95.96 Aligned_cols=179 Identities=15% Similarity=0.253 Sum_probs=105.4
Q ss_pred CCCCCCeeehhHHH---HHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHH
Q 001348 88 SSDFEGLIGLDARI---ERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVH 164 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~---~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~ 164 (1094)
|...+++||.+..+ ..|...+..+ ....+.|||++|+||||+|+.+++.....|... . . ...+...
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~~--~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l---~-a-----~~~~~~~ 90 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEAG--HLHSMILWGPPGTGKTTLAEVIARYANADVERI---S-A-----VTSGVKE 90 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHHT--CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEE---E-T-----TTCCHHH
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHcC--CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEE---E-e-----ccCCHHH
Confidence 66778899999888 6777777543 346789999999999999999999875543211 1 1 0023333
Q ss_pred HHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCChH--hHHHHhcCCCCCCCCceEEE-EeCChh--hhh-
Q 001348 165 LRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKFR--QLEYLAGGLDRFGLGSRIIV-TSRDKQ--VLE- 238 (1094)
Q Consensus 165 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIii-TTR~~~--v~~- 238 (1094)
+.. ++... ......+++.+|++|+++... +.+.|+..+.. + ...+|. ||.+.. +..
T Consensus 91 ir~-~~~~a---------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~-~v~lI~att~n~~~~l~~a 152 (447)
T 3pvs_A 91 IRE-AIERA---------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED-G-TITFIGATTENPSFELNSA 152 (447)
T ss_dssp HHH-HHHHH---------------HHHHHTTCCEEEEEETTTCC------CCHHHHHT-T-SCEEEEEESSCGGGSSCHH
T ss_pred HHH-HHHHH---------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-C-ceEEEecCCCCcccccCHH
Confidence 222 11111 111124578899999997642 23333332221 1 233443 555442 111
Q ss_pred hcCcCeEEEccCCCHHHHHHHHHhhcccCC-----CCCchHHHHHHHHHHHhCCCchHHHHH
Q 001348 239 KYGVDHIYEVEELNNIEALELFCKYAFRQN-----HHPQDLMVISGRVVDYARGNPLAIKVL 295 (1094)
Q Consensus 239 ~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~-----~~~~~~~~~~~~i~~~~~GlPLal~~l 295 (1094)
......++.++.++.++..+++.+.+-... ....--.+..+.++++++|.+-.+..+
T Consensus 153 L~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 153 LLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp HHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred HhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 122346889999999999999988764311 111123356677888899988655433
No 188
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.20 E-value=2.9e-05 Score=89.33 Aligned_cols=309 Identities=12% Similarity=0.155 Sum_probs=160.6
Q ss_pred ccCccccCCCC-CceEEEEeCCCCCCccccccccccCCccccCcccccEEEecCCC---CCCCCCC-C-Cccccceeecc
Q 001348 447 NLNPQAFANMP-NLRFLKFYMPKLFGISDMVCKLHLPQGLQYLSDELRYLHWHGYP---LKMLPSN-F-TPENLIELNLL 520 (1094)
Q Consensus 447 ~l~~~~f~~l~-~Lr~L~l~~n~l~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~---l~~lp~~-~-~~~~L~~L~L~ 520 (1094)
.+...+|.++. .|+.+.+-.+ + ..+....+.-..+|+.+.+..+. ++.++.. | ...+|+.+.+.
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~s-v---------t~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~ 122 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPDT-V---------TEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPIL 122 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECTT-C---------CEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGG
T ss_pred EcCHhhccCCCCcCEEEEECCC-e---------eEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccC
Confidence 45566666663 4666666332 1 12333333333456666665542 4444433 2 24566666665
Q ss_pred cccccccc-ccCCCCCcCcccCCCCCCCCCeEEeccCCCCCcccCCcc----CCccEEEeccCCCCccccccccccccce
Q 001348 521 YSRIEQLW-KGKKGCKSLRCFPNNIHFRSPISLNFSYCVNFKEFPQIS----GNVRELYLRGTPIEYVPSSIDCLAKLEY 595 (1094)
Q Consensus 521 ~n~i~~l~-~~~~~l~~L~~~~~~~~~~~l~~L~Ls~~~~l~~~p~~~----~~L~~L~L~~~~l~~lp~~i~~L~~L~~ 595 (1094)
.+ ++.+. ..+..+.+|+ .+.+... +..+++.. .+|+.+.+..+ +..+........+|+.
T Consensus 123 ~~-~~~I~~~aF~~c~~L~------------~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~ 186 (394)
T 4gt6_A 123 DS-VTEIDSEAFHHCEELD------------TVTIPEG--VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQ 186 (394)
T ss_dssp TT-CSEECTTTTTTCTTCC------------EEECCTT--CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSE
T ss_pred Cc-cceehhhhhhhhcccc------------cccccce--eeeecccceecccccccccccce-eeEeccccccccceeE
Confidence 44 33332 2345556665 5555322 22222111 15666665432 4444433333355666
Q ss_pred eecccccccccchhhhhcCCcccEEeccCCcccCccchhh--------------cccCccceeeccCccccccc-chhhc
Q 001348 596 LDLGHCTILESISTSICKLKSLLKLCLDNCSKLESFPEIL--------------EKMGCLEDIDLEGTAITELP-SSIEY 660 (1094)
Q Consensus 596 L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l--------------~~l~~L~~L~L~~~~i~~lp-~~l~~ 660 (1094)
+.+..+. ...-...+.++.+|............ ....+ .....+..+.+. +.++.+. ..+.+
T Consensus 187 i~ip~~~-~~i~~~af~~c~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~ 263 (394)
T 4gt6_A 187 IHIPAKV-TRIGTNAFSECFALSTITSDSESYPA-IDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDS 263 (394)
T ss_dssp EEECTTC-CEECTTTTTTCTTCCEEEECCSSSCB-SSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTT
T ss_pred EEECCcc-cccccchhhhccccceeccccccccc-ccceeecccccccccccccccccccceEEcC-CcceEcccceeee
Confidence 6665432 22233445556666666554322111 11100 011112222221 1222222 24667
Q ss_pred cCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccCC-ccccCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeC
Q 001348 661 LGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQLP-SSITNLNELQVVWCSGCRGLILPPSFSGLSYLTELDL 739 (1094)
Q Consensus 661 l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p-~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L 739 (1094)
+.+|+.+.+.... ...-...+.++.+|+.+.+. +.++.++ ..|.++.+|+.+.+..+-...-...|.++.+|+.+.|
T Consensus 264 c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L~~i~i 341 (394)
T 4gt6_A 264 CAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQLERIAI 341 (394)
T ss_dssp CSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEE
T ss_pred cccccEEeccccc-ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCCCEEEE
Confidence 7888888876532 22223457778888888886 4455554 4577888999999876533233456889999999999
Q ss_pred CCCCCCCCCc-cccCCCCCCeeecCCCCCcccchhhcCCCCCCEEEccCCC
Q 001348 740 SCCNLIEIPQ-DIGCLSLLRSLDLRKNNFEYLPASMKHLSKLKSLDLSCCN 789 (1094)
Q Consensus 740 s~n~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~~~ 789 (1094)
.. +++.+.. .|.++++|+.+.+.++... + ..+..+.+|+.|.+..+.
T Consensus 342 p~-sv~~I~~~aF~~C~~L~~i~~~~~~~~-~-~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 342 PS-SVTKIPESAFSNCTALNNIEYSGSRSQ-W-NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp CT-TCCBCCGGGGTTCTTCCEEEESSCHHH-H-HTCBCCCCC---------
T ss_pred Cc-ccCEEhHhHhhCCCCCCEEEECCceee-h-hhhhccCCCCEEEeCCCC
Confidence 65 4777754 4888999999999987432 1 345677888888876553
No 189
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.18 E-value=9.2e-06 Score=92.01 Aligned_cols=201 Identities=12% Similarity=0.121 Sum_probs=108.3
Q ss_pred CCCCCCeeehhHHHHHHHhcc-ccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeech-------------
Q 001348 88 SSDFEGLIGLDARIERIKSLL-CIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVR------------- 153 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L-~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~------------- 153 (1094)
|...++++|.+..++.+.+.+ ..+. ... +.|+|+.|+||||+|+.++..+-..-...+++....
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred CCCHHHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 666778999999999999988 5332 233 899999999999999999986532221111111000
Q ss_pred ---------hhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCChH--hHHHHhcCCCCCC
Q 001348 154 ---------EESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKFR--QLEYLAGGLDRFG 222 (1094)
Q Consensus 154 ---------~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~ 222 (1094)
..+..........++++.++.... ..... . .+. .+..++-++|||+++..+ ..+.+...+....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~--~-~ls-~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQME-QVDFQ--D-SKD-GLAHRYKCVIINEANSLTKDAQAALRRTMEKYS 162 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTT-C----------------CCEEEEEECTTSSCHHHHHHHHHHHHHST
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHhc-ccccc--c-ccc-ccCCCCeEEEEeCccccCHHHHHHHHHHHHhhc
Confidence 000000000001122222221100 00000 0 000 023466799999997642 2333333332234
Q ss_pred CCceEEEEeCChh-hhhh-cCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHHHHHh
Q 001348 223 LGSRIIVTSRDKQ-VLEK-YGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAIKVLA 296 (1094)
Q Consensus 223 ~gsrIiiTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg 296 (1094)
.+.++|++|.+.. +... ......+++++++.++..+.+...+-.....-+ ..+....|++.++|.+-.+..+.
T Consensus 163 ~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 163 KNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLE-TKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp TTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEEC-CSHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHcCCCHHHHHHHH
Confidence 5678888887643 2221 123378999999999999999887643221111 02455778889999886654443
No 190
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.17 E-value=1.5e-05 Score=89.09 Aligned_cols=178 Identities=15% Similarity=0.143 Sum_probs=97.6
Q ss_pred CCCCCee-ehhH--HHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHH
Q 001348 89 SDFEGLI-GLDA--RIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHL 165 (1094)
Q Consensus 89 ~~~~~~v-Gr~~--~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l 165 (1094)
...+.|| |... ....+...+.........+.|+|++|+||||||+++++.....-...+++. .. .+
T Consensus 8 ~~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~-~~----------~~ 76 (324)
T 1l8q_A 8 YTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS-AD----------DF 76 (324)
T ss_dssp CCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE-HH----------HH
T ss_pred CCcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE-HH----------HH
Confidence 3456676 5433 334445544433224567899999999999999999997754412233432 11 12
Q ss_pred HHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCChH----hHHHHhcCCCC-CCCCceEEEEeCChh-----
Q 001348 166 RDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKFR----QLEYLAGGLDR-FGLGSRIIVTSRDKQ----- 235 (1094)
Q Consensus 166 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----~~~~l~~~~~~-~~~gsrIiiTTR~~~----- 235 (1094)
...+...+... ....+.+.+. +.-+|++||++... ..+.+...+.. ...|.+||+||....
T Consensus 77 ~~~~~~~~~~~--------~~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~ 147 (324)
T 1l8q_A 77 AQAMVEHLKKG--------TINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDG 147 (324)
T ss_dssp HHHHHHHHHHT--------CHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTT
T ss_pred HHHHHHHHHcC--------cHHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHH
Confidence 22222222211 1222333333 35688999995532 12222222111 134567888886431
Q ss_pred ----hhhhcCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCch
Q 001348 236 ----VLEKYGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPL 290 (1094)
Q Consensus 236 ----v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL 290 (1094)
+...+.....+++++ +.++..+++...+......- -.+....+++++ |..-
T Consensus 148 l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l--~~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 148 VSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLEL--RKEVIDYLLENT-KNVR 202 (324)
T ss_dssp SCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHC-SSHH
T ss_pred hhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHhC-CCHH
Confidence 222233336799999 99999999988774322211 134456677777 6654
No 191
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.16 E-value=0.00012 Score=83.71 Aligned_cols=103 Identities=14% Similarity=0.144 Sum_probs=57.1
Q ss_pred ccCCCcccEEecCCccCccC-CccccCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeCCCCCCCCCCcc-ccCCCCCCe
Q 001348 682 LGNLKSLKMLCANESAISQL-PSSITNLNELQVVWCSGCRGLILPPSFSGLSYLTELDLSCCNLIEIPQD-IGCLSLLRS 759 (1094)
Q Consensus 682 l~~l~~L~~L~l~~~~i~~~-p~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~ 759 (1094)
+.++..|+.+.+..+ ++.+ ...+.++.+|+.+.+..+-...-...|.++.+|+.+.+.++.++.++.. +.++.+|+.
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~ 314 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSS 314 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCE
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhccccccccceeccccccccccccccccccccccceehhhhhcCCCCCCE
Confidence 444555555555443 3333 2344555566666654432222223466677777777776666665443 566677777
Q ss_pred eecCCCCCcccch-hhcCCCCCCEEEcc
Q 001348 760 LDLRKNNFEYLPA-SMKHLSKLKSLDLS 786 (1094)
Q Consensus 760 L~L~~n~l~~lp~-~l~~l~~L~~L~L~ 786 (1094)
+.|..+ ++.|.. .+.++++|+.+.|.
T Consensus 315 i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 315 VTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred EEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 777543 555543 45666666666553
No 192
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.16 E-value=9.3e-06 Score=82.28 Aligned_cols=52 Identities=27% Similarity=0.335 Sum_probs=43.2
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhc
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISR 141 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 141 (1094)
+...+.++|++.+++++.+.+.. ...+.|.|+|++|+||||+|+++++....
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~--~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILSR--RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS--SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ccccchhhcchHHHHHHHHHHhC--CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 45567899999999999998864 23456789999999999999999997644
No 193
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.15 E-value=2.6e-05 Score=89.44 Aligned_cols=184 Identities=15% Similarity=0.115 Sum_probs=101.4
Q ss_pred CCCCCCeeehhHHHHHHHhcccc----------CCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhc
Q 001348 88 SSDFEGLIGLDARIERIKSLLCI----------GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESE 157 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~ 157 (1094)
+...++++|.+..++.|.+.+.. .....+-|.|+|++|+|||+||++++++....| +..+..+...
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~----~~v~~~~l~~ 186 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATF----FNISAASLTS 186 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEE----EEECSCCC--
T ss_pred CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcE----EEeeHHHhhc
Confidence 45567899999999999987721 012246789999999999999999988754332 2221111100
Q ss_pred cC-CChHHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCCh-------------HhHHHHhcCC----C
Q 001348 158 KG-GGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKF-------------RQLEYLAGGL----D 219 (1094)
Q Consensus 158 ~~-~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-------------~~~~~l~~~~----~ 219 (1094)
.. .......+ ..+...-..+..+|+||+++.. .....++..+ .
T Consensus 187 ~~~g~~~~~~~-------------------~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 247 (389)
T 3vfd_A 187 KYVGEGEKLVR-------------------ALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQS 247 (389)
T ss_dssp -----CHHHHH-------------------HHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-
T ss_pred cccchHHHHHH-------------------HHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccc
Confidence 00 00011111 1111111235678999999644 1112222111 1
Q ss_pred CCCCCceEEEEeCChhhhh-h--cCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCch-HHHHH
Q 001348 220 RFGLGSRIIVTSRDKQVLE-K--YGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPL-AIKVL 295 (1094)
Q Consensus 220 ~~~~gsrIiiTTR~~~v~~-~--~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL-al~~l 295 (1094)
.......||.||.....+. . -.....+.++..+.++..+++...+-...... ..+....+++.+.|..- ++..+
T Consensus 248 ~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l--~~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 248 AGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPL--TQKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp ----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCS--CHHHHHHHHHHTTTCCHHHHHHH
T ss_pred cCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHcCCCCHHHHHHH
Confidence 1122345666665543221 1 12345788999999999999988764322221 12355678888888654 55444
Q ss_pred h
Q 001348 296 A 296 (1094)
Q Consensus 296 g 296 (1094)
.
T Consensus 326 ~ 326 (389)
T 3vfd_A 326 A 326 (389)
T ss_dssp H
T ss_pred H
Confidence 3
No 194
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.13 E-value=2.8e-05 Score=90.52 Aligned_cols=184 Identities=13% Similarity=0.139 Sum_probs=105.5
Q ss_pred CCCCCCeeehhHHHHHHHhcccc----------CCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEee-echhhh
Q 001348 88 SSDFEGLIGLDARIERIKSLLCI----------GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMA-NVREES 156 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~-~~~~~~ 156 (1094)
+...++++|.+..++.|.+.+.. .....+.|.|+|++|+|||+||+++++.... .-|+. +..+
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~----~~~~~v~~~~-- 203 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN----STFFSISSSD-- 203 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS----SEEEEECCC---
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC----CCEEEEeHHH--
Confidence 45567899999999999876621 1123467899999999999999999987621 11221 1111
Q ss_pred ccCCChHHHHHHHHHhhhccCCcccCCCchHHHHH-HhcCCeEEEEEecCCCh-------------HhHHHHhcCCCCC-
Q 001348 157 EKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRE-RLQCMKVFIVLDDVNKF-------------RQLEYLAGGLDRF- 221 (1094)
Q Consensus 157 ~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~-~L~~kr~LlVLDdv~~~-------------~~~~~l~~~~~~~- 221 (1094)
+. ....+. .......+.+ .-..++.+|+||+++.. .....++..+...
T Consensus 204 --------l~----~~~~g~-----~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~ 266 (444)
T 2zan_A 204 --------LV----SKWLGE-----SEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG 266 (444)
T ss_dssp -------------------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSS
T ss_pred --------HH----hhhcch-----HHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcc
Confidence 10 010110 1111222222 22356789999999754 1234455544432
Q ss_pred --CCCceEEEEeCChhhhhh---cCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCC-chHHHHH
Q 001348 222 --GLGSRIIVTSRDKQVLEK---YGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGN-PLAIKVL 295 (1094)
Q Consensus 222 --~~gsrIiiTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~l 295 (1094)
..+..||.||.....+.. -.....+.++..+.++..++|..++....... -......+++.+.|. +-.|..+
T Consensus 267 ~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l--~~~~l~~la~~t~G~sgadl~~l 344 (444)
T 2zan_A 267 VDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSL--TEADFQELGRKTDGYSGADISII 344 (444)
T ss_dssp CCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEEC--CHHHHHHHHHHTTTCCHHHHHHH
T ss_pred cCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHcCCCCHHHHHHH
Confidence 345567767765432211 13456888999999999999988763322111 123446777778774 3344444
Q ss_pred h
Q 001348 296 A 296 (1094)
Q Consensus 296 g 296 (1094)
.
T Consensus 345 ~ 345 (444)
T 2zan_A 345 V 345 (444)
T ss_dssp H
T ss_pred H
Confidence 3
No 195
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.12 E-value=3e-05 Score=88.24 Aligned_cols=197 Identities=14% Similarity=0.081 Sum_probs=104.4
Q ss_pred CCCeeehhHHHHHHH---hccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHH
Q 001348 91 FEGLIGLDARIERIK---SLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRD 167 (1094)
Q Consensus 91 ~~~~vGr~~~~~~l~---~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~ 167 (1094)
.+.+||++..++.+. ..+..+....+.+.|+|++|+|||++|+++++.+....... .+.+. .......+......
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~-~~~~~-~~~~~~~~~~~~~~ 120 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFT-AIAGS-EIFSLEMSKTEALT 120 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEE-EEEGG-GGSCSSSCHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcc-cccch-hhhhcccchhHHHH
Confidence 678999999877644 44433333346889999999999999999999876432211 11111 11111122223333
Q ss_pred HHHHhhhccCC---------------------------cccCCCchHHHHHHh---------cCC----eEEEEEecCCC
Q 001348 168 RLLSQILDESI---------------------------RIETPYIPHYIRERL---------QCM----KVFIVLDDVNK 207 (1094)
Q Consensus 168 ~ll~~l~~~~~---------------------------~~~~~~~~~~l~~~L---------~~k----r~LlVLDdv~~ 207 (1094)
+.+........ ..........+++.+ .++ +.+|++|+++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~ 200 (368)
T 3uk6_A 121 QAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHM 200 (368)
T ss_dssp HHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGG
T ss_pred HHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccc
Confidence 33222111000 000000011111111 233 34999999976
Q ss_pred h--HhHHHHhcCCCCCCCCceEEEEeCC-----------------hhhhhhcCcCeEEEccCCCHHHHHHHHHhhcccCC
Q 001348 208 F--RQLEYLAGGLDRFGLGSRIIVTSRD-----------------KQVLEKYGVDHIYEVEELNNIEALELFCKYAFRQN 268 (1094)
Q Consensus 208 ~--~~~~~l~~~~~~~~~gsrIiiTTR~-----------------~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~ 268 (1094)
. +....+...+...... .++++|.. +.+... ...+.+++++.++..+++...+-...
T Consensus 201 l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR---~~~i~~~~~~~~e~~~il~~~~~~~~ 276 (368)
T 3uk6_A 201 LDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDR---LLIVSTTPYSEKDTKQILRIRCEEED 276 (368)
T ss_dssp SBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTT---EEEEEECCCCHHHHHHHHHHHHHHTT
T ss_pred cChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhh---ccEEEecCCCHHHHHHHHHHHHHHcC
Confidence 4 3344454444433222 34444431 122222 24589999999999999988764322
Q ss_pred CCCchHHHHHHHHHHHhC-CCchHHHHH
Q 001348 269 HHPQDLMVISGRVVDYAR-GNPLAIKVL 295 (1094)
Q Consensus 269 ~~~~~~~~~~~~i~~~~~-GlPLal~~l 295 (1094)
.. --.+....+++++. |.|-.+..+
T Consensus 277 ~~--~~~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 277 VE--MSEDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp CC--BCHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CC--CCHHHHHHHHHHhcCCCHHHHHHH
Confidence 21 12345677888887 777655443
No 196
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.11 E-value=1.5e-05 Score=88.40 Aligned_cols=150 Identities=17% Similarity=0.164 Sum_probs=87.3
Q ss_pred CeeehhHHHHHHHhcccc-------------CCCCeEEEEEEecCCCchhhHHHHHHHHHhcccc--ceEEee-echhhh
Q 001348 93 GLIGLDARIERIKSLLCI-------------GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFE--SKCFMA-NVREES 156 (1094)
Q Consensus 93 ~~vGr~~~~~~l~~~L~~-------------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~-~~~~~~ 156 (1094)
.++|.+..+++|.+++.. .......|.|+|++|+|||++|+++++.+..... ..-++. +.....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 478888888888766531 1233457889999999999999999987644221 111221 111110
Q ss_pred ccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCC-----------ChHhHHHHhcCCCCCCCCc
Q 001348 157 EKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVN-----------KFRQLEYLAGGLDRFGLGS 225 (1094)
Q Consensus 157 ~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~-----------~~~~~~~l~~~~~~~~~gs 225 (1094)
....+-. ...+ ...+... +.-+|+||+++ ..+....|...+.....+.
T Consensus 112 ~~~~g~~--~~~~----------------~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~ 170 (309)
T 3syl_A 112 GQYIGHT--APKT----------------KEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDL 170 (309)
T ss_dssp CSSTTCH--HHHH----------------HHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTC
T ss_pred hhccccc--HHHH----------------HHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCE
Confidence 0000000 0000 1111111 34589999997 3344455554444344567
Q ss_pred eEEEEeCChh----------hhhhcCcCeEEEccCCCHHHHHHHHHhhcc
Q 001348 226 RIIVTSRDKQ----------VLEKYGVDHIYEVEELNNIEALELFCKYAF 265 (1094)
Q Consensus 226 rIiiTTR~~~----------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af 265 (1094)
.||.||.... +... ....+.++.++.++..+++..++-
T Consensus 171 ~~i~~~~~~~~~~~~~~~~~l~~R--~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 171 VVILAGYADRMENFFQSNPGFRSR--IAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp EEEEEECHHHHHHHHHHSTTHHHH--EEEEEEECCCCHHHHHHHHHHHHH
T ss_pred EEEEeCChHHHHHHHhhCHHHHHh--CCeEEEcCCcCHHHHHHHHHHHHH
Confidence 7888886432 2222 237899999999999999988764
No 197
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.02 E-value=4.1e-05 Score=85.42 Aligned_cols=179 Identities=15% Similarity=0.158 Sum_probs=104.2
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHH
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRD 167 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~ 167 (1094)
|...++++|.+..++.+.+++..+. -..++.+.|++|+||||+|+++++.+...| +.+. ... .+...+ +
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~l~~~~---~~i~-~~~-----~~~~~i-~ 90 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHDVNADM---MFVN-GSD-----CKIDFV-R 90 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHHTTEEE---EEEE-TTT-----CCHHHH-H
T ss_pred CCCHHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhCCCE---EEEc-ccc-----cCHHHH-H
Confidence 6677889999999999999987432 345778889999999999999998774321 2222 111 222222 2
Q ss_pred HHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCChH---hHHHHhcCCCCCCCCceEEEEeCChhhh-hh-cCc
Q 001348 168 RLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKFR---QLEYLAGGLDRFGLGSRIIVTSRDKQVL-EK-YGV 242 (1094)
Q Consensus 168 ~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~---~~~~l~~~~~~~~~gsrIiiTTR~~~v~-~~-~~~ 242 (1094)
..+.+..... ...+++-++|+|+++... +.+.+...+.....+.++|+||....-. .. ...
T Consensus 91 ~~~~~~~~~~--------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR 156 (324)
T 3u61_B 91 GPLTNFASAA--------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR 156 (324)
T ss_dssp THHHHHHHBC--------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH
T ss_pred HHHHHHHhhc--------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh
Confidence 2222211110 012367899999998764 3444443333233467888888765321 11 112
Q ss_pred CeEEEccCCCHHHHHHHHH-------hhcccCCCCCchHHHHHHHHHHHhCCCchHH
Q 001348 243 DHIYEVEELNNIEALELFC-------KYAFRQNHHPQDLMVISGRVVDYARGNPLAI 292 (1094)
Q Consensus 243 ~~~~~l~~L~~~ea~~Lf~-------~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 292 (1094)
...++++.++.++..+++. ..+.......+. .+....+++.++|.+-.+
T Consensus 157 ~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~gd~R~a 212 (324)
T 3u61_B 157 CRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD-MKVVAALVKKNFPDFRKT 212 (324)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC-HHHHHHHHHHTCSCTTHH
T ss_pred CcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc-HHHHHHHHHhCCCCHHHH
Confidence 2579999999888543322 222111111111 245667888888876543
No 198
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.98 E-value=8.5e-05 Score=81.86 Aligned_cols=155 Identities=14% Similarity=0.194 Sum_probs=91.8
Q ss_pred CCCCCCeeehhHHHHHHHhcccc-----------CCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhh
Q 001348 88 SSDFEGLIGLDARIERIKSLLCI-----------GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREES 156 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~ 156 (1094)
....++++|.+..+++|.+.+.. +-...+.|.|+|++|.||||||+++++.....| +.+. .
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~---i~v~-~---- 82 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF---ISIK-G---- 82 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEE---EEEC-H----
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCE---EEEE-h----
Confidence 33456799999988888877642 123456789999999999999999998764322 1111 1
Q ss_pred ccCCChHHHHHHHHHhhhccCCcccCCCc-hHHHHHHhcCCeEEEEEecCCChH----------------hHHHHhcCCC
Q 001348 157 EKGGGLVHLRDRLLSQILDESIRIETPYI-PHYIRERLQCMKVFIVLDDVNKFR----------------QLEYLAGGLD 219 (1094)
Q Consensus 157 ~~~~~~~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~ 219 (1094)
..+.. ...+.. ... ...+.........+|++|+++... ....++..+.
T Consensus 83 ------~~l~~----~~~g~~-----~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~ 147 (301)
T 3cf0_A 83 ------PELLT----MWFGES-----EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMD 147 (301)
T ss_dssp ------HHHHH----HHHTTC-----TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHH
T ss_pred ------HHHHh----hhcCch-----HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhh
Confidence 12211 111111 111 222333334567899999996421 1222322221
Q ss_pred C--CCCCceEEEEeCChhhhhh--c---CcCeEEEccCCCHHHHHHHHHhhcc
Q 001348 220 R--FGLGSRIIVTSRDKQVLEK--Y---GVDHIYEVEELNNIEALELFCKYAF 265 (1094)
Q Consensus 220 ~--~~~gsrIiiTTR~~~v~~~--~---~~~~~~~l~~L~~~ea~~Lf~~~af 265 (1094)
. ...+..||.||.....+.. . .....+.++..+.++..+++..+.-
T Consensus 148 ~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~ 200 (301)
T 3cf0_A 148 GMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLR 200 (301)
T ss_dssp SSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHT
T ss_pred cccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHc
Confidence 1 1234567777765543221 1 2457899999999999999877653
No 199
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.95 E-value=0.00029 Score=80.37 Aligned_cols=110 Identities=15% Similarity=0.098 Sum_probs=57.3
Q ss_pred hhccCCCcEEecCCCCCCCCCCccccCCCcccEEecCCccCccCC-ccccCCCCCcEEEccCCCCCCCC-CCCCCCCCCC
Q 001348 658 IEYLGGLTTLNLTGCSKLDNLPENLGNLKSLKMLCANESAISQLP-SSITNLNELQVVWCSGCRGLILP-PSFSGLSYLT 735 (1094)
Q Consensus 658 l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~i~~~p-~~l~~l~~L~~L~l~~~~~~~lp-~~l~~l~~L~ 735 (1094)
+.++..|+.+.+..+ ....-...+.++.+|+.+.+..+ +..++ ..+..+.+|+.+.+.++....++ ..|.++.+|+
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS 313 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence 344445555554432 11111223444555555555432 33332 34555666666666555444333 3466777777
Q ss_pred EEeCCCCCCCCCCc-cccCCCCCCeeecCCCCCcccc
Q 001348 736 ELDLSCCNLIEIPQ-DIGCLSLLRSLDLRKNNFEYLP 771 (1094)
Q Consensus 736 ~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp 771 (1094)
.+.|..+ ++.|.. .|.++++|+.+.+..+ ++.+.
T Consensus 314 ~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~ 348 (379)
T 4h09_A 314 SVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIE 348 (379)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEEC
T ss_pred EEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEc
Confidence 7777543 555544 3667777887777543 55443
No 200
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.83 E-value=4.4e-06 Score=85.01 Aligned_cols=117 Identities=10% Similarity=0.061 Sum_probs=68.5
Q ss_pred chhhccCCCcEEecCCC-CCCC----CCCccccCCCcccEEecCCccCccCCccccCCCCCcEEEccCCCCCCCCCCCCC
Q 001348 656 SSIEYLGGLTTLNLTGC-SKLD----NLPENLGNLKSLKMLCANESAISQLPSSITNLNELQVVWCSGCRGLILPPSFSG 730 (1094)
Q Consensus 656 ~~l~~l~~L~~L~L~~~-~~~~----~lp~~l~~l~~L~~L~l~~~~i~~~p~~l~~l~~L~~L~l~~~~~~~lp~~l~~ 730 (1094)
..+...++|++|+|++| .+.. .+...+...++|++|++++|.++.--. ..+...+..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~------------------~~l~~~L~~ 91 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVA------------------FALAEMLKV 91 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHH------------------HHHHHHHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHH------------------HHHHHHHHh
Confidence 34555667777777776 4332 123334444555555555555442100 001112334
Q ss_pred CCCCCEEeCCCCCCCC-----CCccccCCCCCCeeec--CCCCCcc-----cchhhcCCCCCCEEEccCCCC
Q 001348 731 LSYLTELDLSCCNLIE-----IPQDIGCLSLLRSLDL--RKNNFEY-----LPASMKHLSKLKSLDLSCCNM 790 (1094)
Q Consensus 731 l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~L--~~n~l~~-----lp~~l~~l~~L~~L~L~~~~~ 790 (1094)
.++|++|+|++|.+.+ +...+...++|++|+| ++|.++. +...+...++|++|+|++|.+
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 4567777777777764 4555666778888888 7787772 445566677888888887753
No 201
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.80 E-value=0.00014 Score=81.82 Aligned_cols=173 Identities=20% Similarity=0.263 Sum_probs=101.6
Q ss_pred CCCCeeehhHHHHHHHhcccc-----------CCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhcc
Q 001348 90 DFEGLIGLDARIERIKSLLCI-----------GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEK 158 (1094)
Q Consensus 90 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 158 (1094)
..+++.|.+..+++|.+.+.. +-.-.+-|.++|++|.|||.||+++++.....| +.....+....
T Consensus 146 ~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f----~~v~~s~l~sk 221 (405)
T 4b4t_J 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKF----IRVSGAELVQK 221 (405)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEE----EEEEGGGGSCS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCc----eEEEhHHhhcc
Confidence 346689999999999887642 223457889999999999999999999876554 22222222211
Q ss_pred CCC-hHHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCChH----------------hHHHHhcCCCCC
Q 001348 159 GGG-LVHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKFR----------------QLEYLAGGLDRF 221 (1094)
Q Consensus 159 ~~~-~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~ 221 (1094)
..| .....+.++. ..-...+.+|++|+++..- .+..++..++.+
T Consensus 222 ~vGese~~vr~lF~-------------------~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 282 (405)
T 4b4t_J 222 YIGEGSRMVRELFV-------------------MAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGF 282 (405)
T ss_dssp STTHHHHHHHHHHH-------------------HHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTT
T ss_pred ccchHHHHHHHHHH-------------------HHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhcc
Confidence 111 1122222211 1113468899999985421 133333333322
Q ss_pred --CCCceEEEEeCChhhhh-----hcCcCeEEEccCCCHHHHHHHHHhhcccCCC-CCchHHHHHHHHHHHhCCCc
Q 001348 222 --GLGSRIIVTSRDKQVLE-----KYGVDHIYEVEELNNIEALELFCKYAFRQNH-HPQDLMVISGRVVDYARGNP 289 (1094)
Q Consensus 222 --~~gsrIiiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~-~~~~~~~~~~~i~~~~~GlP 289 (1094)
..+-.||.||.....+. .-..+..++++..+.++..++|..+.-+... ...++ ..+++.+.|.-
T Consensus 283 ~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl----~~lA~~t~G~S 354 (405)
T 4b4t_J 283 ETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINL----RKVAEKMNGCS 354 (405)
T ss_dssp TCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCH----HHHHHHCCSCC
T ss_pred CCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCH----HHHHHHCCCCC
Confidence 23345566776544322 1135689999999999999999877633222 22234 45566676654
No 202
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.78 E-value=9.2e-06 Score=82.62 Aligned_cols=84 Identities=15% Similarity=0.202 Sum_probs=43.4
Q ss_pred ccccccccceeecccc-ccccc----chhhhhcCCcccEEeccCCcccCc----cchhhcccCccceeeccCccccc---
Q 001348 586 SIDCLAKLEYLDLGHC-TILES----ISTSICKLKSLLKLCLDNCSKLES----FPEILEKMGCLEDIDLEGTAITE--- 653 (1094)
Q Consensus 586 ~i~~L~~L~~L~L~~~-~~~~~----lp~~i~~l~~L~~L~L~~~~~~~~----~p~~l~~l~~L~~L~L~~~~i~~--- 653 (1094)
.+...++|++|+|++| .+... +...+...++|++|+|++|.+... +...+...++|++|+|++|.|..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3455566777777766 54321 233344456666666666654332 23334444556666666655552
Q ss_pred --ccchhhccCCCcEEec
Q 001348 654 --LPSSIEYLGGLTTLNL 669 (1094)
Q Consensus 654 --lp~~l~~l~~L~~L~L 669 (1094)
+...+...++|++|+|
T Consensus 111 ~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 111 LALVEALQSNTSLIELRI 128 (185)
T ss_dssp HHHHHGGGGCSSCCEEEC
T ss_pred HHHHHHHHhCCCceEEEe
Confidence 3334444445555555
No 203
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.76 E-value=0.0002 Score=76.92 Aligned_cols=154 Identities=16% Similarity=0.144 Sum_probs=84.4
Q ss_pred CCCCCCeeehhHHHHHHHhcccc----------CCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhc
Q 001348 88 SSDFEGLIGLDARIERIKSLLCI----------GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESE 157 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~ 157 (1094)
+...++++|.+..++++.+++.. +..-.+-|.|+|++|.||||+|+++++.....| +.+. ......
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~i~-~~~~~~ 83 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS-GSDFVE 83 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE---EEEC-SCSSTT
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCE---EEEe-HHHHHH
Confidence 44557799999888877765431 011234588999999999999999998764332 2222 111100
Q ss_pred cCCC-hHHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCCh----------------HhHHHHhcCCCC
Q 001348 158 KGGG-LVHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKF----------------RQLEYLAGGLDR 220 (1094)
Q Consensus 158 ~~~~-~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~----------------~~~~~l~~~~~~ 220 (1094)
...+ ...-. ...+.........++++|+++.. ..+..++..+..
T Consensus 84 ~~~~~~~~~~-------------------~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 144 (257)
T 1lv7_A 84 MFVGVGASRV-------------------RDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDG 144 (257)
T ss_dssp SCCCCCHHHH-------------------HHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHT
T ss_pred HhhhhhHHHH-------------------HHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhC
Confidence 0000 00000 11222222345678999998321 112223222111
Q ss_pred --CCCCceEEEEeCChhhhh-hc----CcCeEEEccCCCHHHHHHHHHhhc
Q 001348 221 --FGLGSRIIVTSRDKQVLE-KY----GVDHIYEVEELNNIEALELFCKYA 264 (1094)
Q Consensus 221 --~~~gsrIiiTTR~~~v~~-~~----~~~~~~~l~~L~~~ea~~Lf~~~a 264 (1094)
...+..||.||....... .. ..+..+.++..+.++..+++..++
T Consensus 145 ~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~ 195 (257)
T 1lv7_A 145 FEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 195 (257)
T ss_dssp CCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred cccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHH
Confidence 123456777776554221 11 235678888889988888887765
No 204
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.74 E-value=1.4e-05 Score=85.66 Aligned_cols=66 Identities=24% Similarity=0.341 Sum_probs=37.4
Q ss_pred cCCcccEEeccCCcccC--ccchhhcccCccceeeccCcccccccchhhccC--CCcEEecCCCCCCCCCC
Q 001348 613 KLKSLLKLCLDNCSKLE--SFPEILEKMGCLEDIDLEGTAITELPSSIEYLG--GLTTLNLTGCSKLDNLP 679 (1094)
Q Consensus 613 ~l~~L~~L~L~~~~~~~--~~p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~--~L~~L~L~~~~~~~~lp 679 (1094)
++++|+.|+|++|.+.+ .+|..+..+++|+.|+|++|.|+.+ ..+..+. +|++|+|++|.+.+.+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccC
Confidence 45666666666666554 3445556666666666666666654 2233333 56666666665544433
No 205
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.73 E-value=0.00025 Score=79.35 Aligned_cols=173 Identities=10% Similarity=0.063 Sum_probs=99.9
Q ss_pred hHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccc---------------------eEEeeechhhh
Q 001348 98 DARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFES---------------------KCFMANVREES 156 (1094)
Q Consensus 98 ~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~---------------------~~~~~~~~~~~ 156 (1094)
+...+.+...+..+ .-...+.++|+.|+||||+|+++++.+...... ..++. ..+.
T Consensus 8 ~~~~~~l~~~i~~~-~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~-~~~~- 84 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLA-PEKG- 84 (334)
T ss_dssp HHHHHHHHHHHHTT-CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEEC-CCTT-
T ss_pred HHHHHHHHHHHHcC-CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEe-cccc-
Confidence 34455666655432 224578899999999999999999976533210 01110 0000
Q ss_pred ccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCCh--HhHHHHhcCCCCCCCCceEEEEeCCh
Q 001348 157 EKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKF--RQLEYLAGGLDRFGLGSRIIVTSRDK 234 (1094)
Q Consensus 157 ~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~ 234 (1094)
....++..+ +++...+... ...+++-++|+|+++.. +..+.|...+.....++.+|++|.+.
T Consensus 85 ~~~~~i~~i-r~l~~~~~~~---------------~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~ 148 (334)
T 1a5t_A 85 KNTLGVDAV-REVTEKLNEH---------------ARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREP 148 (334)
T ss_dssp CSSBCHHHH-HHHHHHTTSC---------------CTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCG
T ss_pred CCCCCHHHH-HHHHHHHhhc---------------cccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 000111111 1111111100 01246778899999764 34555555554445567777777765
Q ss_pred h-hhhh-cCcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHHHHHh
Q 001348 235 Q-VLEK-YGVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAIKVLA 296 (1094)
Q Consensus 235 ~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg 296 (1094)
+ +... ......++++.++.++..+.+...+ .. -.+.+..+++.++|.|..+..+.
T Consensus 149 ~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~~---~~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 149 ERLLATLRSRCRLHYLAPPPEQYAVTWLSREV----TM---SQDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC----CC---CHHHHHHHHHHTTTCHHHHHHTT
T ss_pred HhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc----CC---CHHHHHHHHHHcCCCHHHHHHHh
Confidence 3 3322 2344689999999999999998775 11 12345678899999997765544
No 206
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.73 E-value=0.00035 Score=78.40 Aligned_cols=184 Identities=13% Similarity=0.198 Sum_probs=106.1
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhcc-ccceEEeeechhhhccCCChHHHH
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRK-FESKCFMANVREESEKGGGLVHLR 166 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~~~~~~~~~~l~ 166 (1094)
|.....++|.+..++.|...+..+ +...+.++|++|+||||+|+.++..+... +...+.-.+. +.. .+...+.
T Consensus 21 p~~~~~~~g~~~~~~~L~~~i~~g--~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~---~~~-~~~~~ir 94 (340)
T 1sxj_C 21 PETLDEVYGQNEVITTVRKFVDEG--KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNA---SDD-RGIDVVR 94 (340)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTT--CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT---TSC-CSHHHHH
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcC---ccc-ccHHHHH
Confidence 566677899999999998888644 33338999999999999999999976432 1111111111 111 2222222
Q ss_pred HHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCCh--HhHHHHhcCCCCCCCCceEEEEeCChh-hhhh-cCc
Q 001348 167 DRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKF--RQLEYLAGGLDRFGLGSRIIVTSRDKQ-VLEK-YGV 242 (1094)
Q Consensus 167 ~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~~-v~~~-~~~ 242 (1094)
+ .+..+..... .+.+.+-++|+|+++.. +..+.|...+.......++|++|.... +... ...
T Consensus 95 ~-~i~~~~~~~~-------------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR 160 (340)
T 1sxj_C 95 N-QIKDFASTRQ-------------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQ 160 (340)
T ss_dssp T-HHHHHHHBCC-------------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred H-HHHHHHhhcc-------------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhh
Confidence 2 2222211100 01234678899998543 333444433333345667777775542 2111 123
Q ss_pred CeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHHH
Q 001348 243 DHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAIK 293 (1094)
Q Consensus 243 ~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~ 293 (1094)
...+++.+++.++..+.+...+-.....- -.+..+.+++.++|.+--+.
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~i--~~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 161 CTRFRFQPLPQEAIERRIANVLVHEKLKL--SPNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHTTTCCB--CHHHHHHHHHHHTTCHHHHH
T ss_pred ceeEeccCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHH
Confidence 35789999999999888877652221111 12456778888999876443
No 207
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.72 E-value=0.00018 Score=84.26 Aligned_cols=180 Identities=18% Similarity=0.224 Sum_probs=100.1
Q ss_pred CCCCeeehhHHHHHHHhccccC-----------CCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhcc
Q 001348 90 DFEGLIGLDARIERIKSLLCIG-----------LPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEK 158 (1094)
Q Consensus 90 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 158 (1094)
..+.++|.+..+++|.+++... ....+-|.|+|++|.|||++|+++++.....| +..+..+....
T Consensus 202 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~f----v~vn~~~l~~~ 277 (489)
T 3hu3_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF----FLINGPEIMSK 277 (489)
T ss_dssp CGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEE----EEEEHHHHHTS
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCE----EEEEchHhhhh
Confidence 3457999999999998887531 23456789999999999999999998763322 22222221111
Q ss_pred CCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCCh-------------HhHHHHhcCCCC--CCC
Q 001348 159 GGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKF-------------RQLEYLAGGLDR--FGL 223 (1094)
Q Consensus 159 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-------------~~~~~l~~~~~~--~~~ 223 (1094)
..+ ..... + ...+.....+++.+|+||+++.. .....|+..+.. ...
T Consensus 278 ~~g--~~~~~-~---------------~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~ 339 (489)
T 3hu3_A 278 LAG--ESESN-L---------------RKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA 339 (489)
T ss_dssp CTT--HHHHH-H---------------HHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTS
T ss_pred hcc--hhHHH-H---------------HHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCC
Confidence 011 00000 0 12223333456789999998321 112222222211 123
Q ss_pred CceEEEEeCChhhh-hh----cCcCeEEEccCCCHHHHHHHHHhhcccCCCC-CchHHHHHHHHHHHhCCC-chHHHHH
Q 001348 224 GSRIIVTSRDKQVL-EK----YGVDHIYEVEELNNIEALELFCKYAFRQNHH-PQDLMVISGRVVDYARGN-PLAIKVL 295 (1094)
Q Consensus 224 gsrIiiTTR~~~v~-~~----~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~-~~~~~~~~~~i~~~~~Gl-PLal~~l 295 (1094)
+.+||.||.....+ .. ......+.++..+.++..+++..++-..... ...+ .++++.+.|. +-.+..+
T Consensus 340 ~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l----~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGHVGADLAAL 414 (489)
T ss_dssp CEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCH----HHHHHTCTTCCHHHHHHH
T ss_pred ceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhH----HHHHHHccCCcHHHHHHH
Confidence 45666677655321 11 1345679999999999999998876432211 1223 3455556664 4344443
No 208
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.67 E-value=4.9e-05 Score=78.33 Aligned_cols=62 Identities=16% Similarity=0.201 Sum_probs=41.1
Q ss_pred CCCCCeeehhH----HHHHHHhccccCCC--CeEEEEEEecCCCchhhHHHHHHHHHhccccceEEee
Q 001348 89 SDFEGLIGLDA----RIERIKSLLCIGLP--NIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMA 150 (1094)
Q Consensus 89 ~~~~~~vGr~~----~~~~l~~~L~~~~~--~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 150 (1094)
...+.|++.+. .++.+.+++..... ..+.|.|+|++|+||||||+++++....+....+|+.
T Consensus 22 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 22 ASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 45567776553 34444555443221 1268899999999999999999998766544455553
No 209
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.66 E-value=0.00019 Score=81.95 Aligned_cols=172 Identities=15% Similarity=0.191 Sum_probs=99.2
Q ss_pred CCCCeeehhHHHHHHHhcccc-----------CCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhcc
Q 001348 90 DFEGLIGLDARIERIKSLLCI-----------GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEK 158 (1094)
Q Consensus 90 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 158 (1094)
..+++.|.+..+++|.+.+.. +-.-.+-|.++|++|.|||+||+++++.....| +.....+....
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f----~~v~~s~l~~~ 254 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATF----LKLAAPQLVQM 254 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE----EEEEGGGGCSS
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCE----EEEehhhhhhc
Confidence 346789999999998876532 223467899999999999999999999865543 22222222222
Q ss_pred CCCh-HHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCCh-------------H---hHHHHhcCCCCC
Q 001348 159 GGGL-VHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKF-------------R---QLEYLAGGLDRF 221 (1094)
Q Consensus 159 ~~~~-~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-------------~---~~~~l~~~~~~~ 221 (1094)
..|- ....+.++.. .-...+++|++|+++.. . .+..++..+..+
T Consensus 255 ~vGese~~ir~lF~~-------------------A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~ 315 (434)
T 4b4t_M 255 YIGEGAKLVRDAFAL-------------------AKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGF 315 (434)
T ss_dssp CSSHHHHHHHHHHHH-------------------HHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTS
T ss_pred ccchHHHHHHHHHHH-------------------HHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhcc
Confidence 1111 1222222111 11235789999998421 0 123344333333
Q ss_pred CC--CceEEEEeCChhhhhh-c----CcCeEEEccCCCHHHHHHHHHhhcccCCC-CCchHHHHHHHHHHHhCCC
Q 001348 222 GL--GSRIIVTSRDKQVLEK-Y----GVDHIYEVEELNNIEALELFCKYAFRQNH-HPQDLMVISGRVVDYARGN 288 (1094)
Q Consensus 222 ~~--gsrIiiTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~af~~~~-~~~~~~~~~~~i~~~~~Gl 288 (1094)
.. +-.||.||.....+.. + ..+..++++..+.++..++|..+.-+-.. ..-++ ..+++.+.|.
T Consensus 316 ~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl----~~lA~~t~G~ 386 (434)
T 4b4t_M 316 SSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINW----QELARSTDEF 386 (434)
T ss_dssp CSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCH----HHHHHHCSSC
T ss_pred CCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCC
Confidence 22 3345557765543321 1 24678999999999999999876533221 12233 4556666664
No 210
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.64 E-value=0.00028 Score=80.45 Aligned_cols=171 Identities=15% Similarity=0.170 Sum_probs=98.8
Q ss_pred CCeeehhHHHHHHHhcccc-----------CCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCC
Q 001348 92 EGLIGLDARIERIKSLLCI-----------GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGG 160 (1094)
Q Consensus 92 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 160 (1094)
+++.|.+..+++|.+.+.. +-.-.+-|.++|++|.|||+||++++++....| +.....+......
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~f----i~vs~s~L~sk~v 284 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATF----IRVIGSELVQKYV 284 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEE----EEEEGGGGCCCSS
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCe----EEEEhHHhhcccC
Confidence 5689999999999876532 224467899999999999999999999876543 2222222211111
Q ss_pred Ch-HHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCChH----------------hHHHHhcCCCCCC-
Q 001348 161 GL-VHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKFR----------------QLEYLAGGLDRFG- 222 (1094)
Q Consensus 161 ~~-~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~~- 222 (1094)
+- ....+.++ ...-...+++|++|+++..- .+..++..+..+.
T Consensus 285 Gesek~ir~lF-------------------~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 345 (467)
T 4b4t_H 285 GEGARMVRELF-------------------EMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP 345 (467)
T ss_dssp SHHHHHHHHHH-------------------HHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC
T ss_pred CHHHHHHHHHH-------------------HHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC
Confidence 11 11222221 11123468999999985321 1222332222222
Q ss_pred -CCceEEEEeCChhhhh-----hcCcCeEEEccCCCHHHHHHHHHhhcccCCCC-CchHHHHHHHHHHHhCCCc
Q 001348 223 -LGSRIIVTSRDKQVLE-----KYGVDHIYEVEELNNIEALELFCKYAFRQNHH-PQDLMVISGRVVDYARGNP 289 (1094)
Q Consensus 223 -~gsrIiiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~-~~~~~~~~~~i~~~~~GlP 289 (1094)
.+-.||.||-....+. .-..+..++++..+.++..++|..++-+-... .-++ ..+++.+.|.-
T Consensus 346 ~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl----~~LA~~T~GfS 415 (467)
T 4b4t_H 346 RGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRW----ELISRLCPNST 415 (467)
T ss_dssp TTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHHCCSCC
T ss_pred CCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCH----HHHHHHCCCCC
Confidence 2334555665443322 11357899999999999999998776432221 2233 45566676653
No 211
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.63 E-value=0.00036 Score=79.82 Aligned_cols=172 Identities=20% Similarity=0.296 Sum_probs=100.6
Q ss_pred CCCeeehhHHHHHHHhcccc-----------CCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccC
Q 001348 91 FEGLIGLDARIERIKSLLCI-----------GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKG 159 (1094)
Q Consensus 91 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 159 (1094)
.+++.|.+..+++|.+.+.. +-.-.+-|.++|++|.|||+||+++++.....| +.....+....+
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~----~~v~~s~l~sk~ 255 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANF----IFSPASGIVDKY 255 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE----EEEEGGGTCCSS
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE----EEEehhhhcccc
Confidence 45688999999988886642 223467899999999999999999999876543 222222222221
Q ss_pred CCh-HHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCChH----------------hHHHHhcCCCCC-
Q 001348 160 GGL-VHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKFR----------------QLEYLAGGLDRF- 221 (1094)
Q Consensus 160 ~~~-~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~- 221 (1094)
.+- ....+.++ ...-...+.+|++|+++..- .+..++...+.+
T Consensus 256 ~Gese~~ir~~F-------------------~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 316 (437)
T 4b4t_L 256 IGESARIIREMF-------------------AYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD 316 (437)
T ss_dssp SSHHHHHHHHHH-------------------HHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS
T ss_pred chHHHHHHHHHH-------------------HHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc
Confidence 111 11111111 11123468999999985320 123333332222
Q ss_pred -CCCceEEEEeCChhhhhh-c----CcCeEEEccCCCHHHHHHHHHhhcccCCC-CCchHHHHHHHHHHHhCCCc
Q 001348 222 -GLGSRIIVTSRDKQVLEK-Y----GVDHIYEVEELNNIEALELFCKYAFRQNH-HPQDLMVISGRVVDYARGNP 289 (1094)
Q Consensus 222 -~~gsrIiiTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~af~~~~-~~~~~~~~~~~i~~~~~GlP 289 (1094)
..+..||.||-....+.. + ..+..++++..+.++..++|..+.-+... ...++ ..+++.+.|.-
T Consensus 317 ~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl----~~lA~~t~G~s 387 (437)
T 4b4t_L 317 NLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDF----EAAVKMSDGFN 387 (437)
T ss_dssp CTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCH----HHHHHTCCSCC
T ss_pred CCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhCCCCC
Confidence 234567777765544321 1 24678999999999999999877643222 22234 34556666643
No 212
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.61 E-value=6e-05 Score=76.12 Aligned_cols=51 Identities=16% Similarity=0.151 Sum_probs=33.6
Q ss_pred CCCCeee----hhHHHHHHHhccccC-CCCeEEEEEEecCCCchhhHHHHHHHHHh
Q 001348 90 DFEGLIG----LDARIERIKSLLCIG-LPNIQIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 90 ~~~~~vG----r~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
..+.+++ ....++.+.+++..- ....+.++|+|++|.||||||+++++.+.
T Consensus 8 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 8 NLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp CSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred ccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3445554 333444444444321 12346899999999999999999999775
No 213
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.61 E-value=0.00077 Score=75.32 Aligned_cols=176 Identities=16% Similarity=0.188 Sum_probs=97.1
Q ss_pred CCCCCCeeehhHHHHHHHhccccC---CCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHH
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIG---LPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVH 164 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~ 164 (1094)
+...+.++|.+..++.+...+..+ ......++|+|++|.||||||+.++..+...|. .. ..... ....+
T Consensus 21 ~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~----~~-sg~~~---~~~~~ 92 (334)
T 1in4_A 21 PKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH----VT-SGPVL---VKQGD 92 (334)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE----EE-ETTTC---CSHHH
T ss_pred CccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE----EE-echHh---cCHHH
Confidence 455667899988888877766432 223467999999999999999999997744321 11 01100 00111
Q ss_pred HHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCCh--HhHHHHhcCCCCC--------CC----------C
Q 001348 165 LRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKF--RQLEYLAGGLDRF--------GL----------G 224 (1094)
Q Consensus 165 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~--------~~----------g 224 (1094)
+. .+...+. ++-++++|+++.. ...+.+....... ++ .
T Consensus 93 l~---------------------~~~~~~~-~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~ 150 (334)
T 1in4_A 93 MA---------------------AILTSLE-RGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQP 150 (334)
T ss_dssp HH---------------------HHHHHCC-TTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CC
T ss_pred HH---------------------HHHHHcc-CCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCC
Confidence 11 1111122 2346677887543 2233332111000 00 1
Q ss_pred ceEE-EEeCChhhhhhc--CcCeEEEccCCCHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHhCCCchHHHHH
Q 001348 225 SRII-VTSRDKQVLEKY--GVDHIYEVEELNNIEALELFCKYAFRQNHHPQDLMVISGRVVDYARGNPLAIKVL 295 (1094)
Q Consensus 225 srIi-iTTR~~~v~~~~--~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 295 (1094)
-.++ .|++...+.... .....+.++..+.++-.+++.+.+-.... ....+.+..|++.+.|.|-.+..+
T Consensus 151 ~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~--~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 151 FTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV--EIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp CEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC--CBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred eEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHhcCCChHHHHHH
Confidence 1222 344433332211 12346899999999999999887632221 122356788999999999655433
No 214
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.60 E-value=5.4e-05 Score=73.48 Aligned_cols=47 Identities=23% Similarity=0.162 Sum_probs=35.4
Q ss_pred CeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHH
Q 001348 93 GLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 93 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
+++|+...++++.+.+..-.....-|.|+|.+|.|||++|+++++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 57899999998888775322223357799999999999999999853
No 215
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.56 E-value=0.00047 Score=80.79 Aligned_cols=149 Identities=16% Similarity=0.140 Sum_probs=82.8
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccc------cceEEeeechhhhccCCC
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKF------ESKCFMANVREESEKGGG 161 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~~~~~~~~~~~~ 161 (1094)
+...+.+||++.+++.+...+.... ..-+.|+|++|+|||++|+.+++.+...+ ...++..+..
T Consensus 176 ~~~ld~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-------- 245 (468)
T 3pxg_A 176 EDSLDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-------- 245 (468)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred cCCCCCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC--------
Confidence 4455679999999999999986432 23457999999999999999999875432 1122221111
Q ss_pred hHHHHHHHHHhhhccCCcccCCCc-hHHHHHHhcCCeEEEEEecCCChHhHHHHhcCCCCCCCCceEEEEeCChhh----
Q 001348 162 LVHLRDRLLSQILDESIRIETPYI-PHYIRERLQCMKVFIVLDDVNKFRQLEYLAGGLDRFGLGSRIIVTSRDKQV---- 236 (1094)
Q Consensus 162 ~~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v---- 236 (1094)
....+ ..... ...+...-..++.+|++| ...+....|...+. ...-++|.+|.....
T Consensus 246 ---------~~~~g-----~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~ 307 (468)
T 3pxg_A 246 ---------TKYRG-----EFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYI 307 (468)
T ss_dssp ---------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHH
T ss_pred ---------ccccc-----hHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHh
Confidence 00000 00111 222222333567888999 22222333443332 123456655554431
Q ss_pred --hhh-cCcCeEEEccCCCHHHHHHHHHhhc
Q 001348 237 --LEK-YGVDHIYEVEELNNIEALELFCKYA 264 (1094)
Q Consensus 237 --~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a 264 (1094)
... ......+.++.++.++..+++...+
T Consensus 308 ~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 308 EKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp TTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hcCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 111 1122479999999999999998765
No 216
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.53 E-value=0.001 Score=77.21 Aligned_cols=174 Identities=16% Similarity=0.195 Sum_probs=98.3
Q ss_pred CCCCeeehhHHHHHHHhcccc----------CCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccC
Q 001348 90 DFEGLIGLDARIERIKSLLCI----------GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKG 159 (1094)
Q Consensus 90 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 159 (1094)
..++++|.+..++++.+++.. +..-.+-|.|+|++|.||||||++++++....| +..+..+.....
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f----~~is~~~~~~~~ 89 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPF----FHISGSDFVELF 89 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCE----EEEEGGGTTTCC
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCe----eeCCHHHHHHHH
Confidence 456789999888777776532 111234588999999999999999999764332 212222211111
Q ss_pred CChHHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCCh----------------HhHHHHhcCCCCC--
Q 001348 160 GGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKF----------------RQLEYLAGGLDRF-- 221 (1094)
Q Consensus 160 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~----------------~~~~~l~~~~~~~-- 221 (1094)
.+... .- ....+.+.......+|+||+++.. ..+..++..+..+
T Consensus 90 ~g~~~---~~---------------~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~ 151 (476)
T 2ce7_A 90 VGVGA---AR---------------VRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS 151 (476)
T ss_dssp TTHHH---HH---------------HHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG
T ss_pred hcccH---HH---------------HHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC
Confidence 11100 00 012233333456889999999542 1233333322211
Q ss_pred CCCceEEEEeCChhhhhh--c---CcCeEEEccCCCHHHHHHHHHhhcccCCCCC-chHHHHHHHHHHHhCCCc
Q 001348 222 GLGSRIIVTSRDKQVLEK--Y---GVDHIYEVEELNNIEALELFCKYAFRQNHHP-QDLMVISGRVVDYARGNP 289 (1094)
Q Consensus 222 ~~gsrIiiTTR~~~v~~~--~---~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~-~~~~~~~~~i~~~~~GlP 289 (1094)
..+..||.||.....+.. . ..+..+.++..+.++..+++..++-...... .++ ..+++.+.|..
T Consensus 152 ~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l----~~la~~t~G~s 221 (476)
T 2ce7_A 152 KEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNL----EIIAKRTPGFV 221 (476)
T ss_dssp GGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCH----HHHHHTCTTCC
T ss_pred CCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhH----HHHHHhcCCCc
Confidence 235567777776654321 1 2456889999999888888877663322111 122 34666777776
No 217
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.52 E-value=0.00018 Score=91.12 Aligned_cols=52 Identities=27% Similarity=0.376 Sum_probs=42.4
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhc
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISR 141 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 141 (1094)
+...+.+|||+.+++++...+... ..+-+.|+|.+|+||||+|+.+++.+..
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~~~--~~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILLRR--TKNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHHCS--SCCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred cCCCcccCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 445567999999999999988643 2345789999999999999999998644
No 218
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.52 E-value=7.1e-05 Score=74.28 Aligned_cols=19 Identities=16% Similarity=0.198 Sum_probs=11.0
Q ss_pred hhccCCCcEEecCCCCCCC
Q 001348 658 IEYLGGLTTLNLTGCSKLD 676 (1094)
Q Consensus 658 l~~l~~L~~L~L~~~~~~~ 676 (1094)
+..+++|++|+|++|..+.
T Consensus 135 L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 135 LHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp GGGCTTCCEEEEESCTTCC
T ss_pred HhcCCCCCEEECCCCCCCC
Confidence 4455666666666665443
No 219
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.50 E-value=0.00061 Score=85.26 Aligned_cols=154 Identities=17% Similarity=0.186 Sum_probs=88.3
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhcc------ccceEEeeechhhhc---c
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRK------FESKCFMANVREESE---K 158 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------F~~~~~~~~~~~~~~---~ 158 (1094)
+...+.++||+.+++++.+.|... ...-+.|+|.+|+||||+|+.+++.+... ....+|..+...... .
T Consensus 182 ~~~~d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~ 259 (758)
T 1r6b_X 182 VGGIDPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKY 259 (758)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCC
T ss_pred cCCCCCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccc
Confidence 445567999999999999988654 23456799999999999999999976432 122233222111100 0
Q ss_pred CCChHHHHHHHHHhhhccCCcccCCCchHHHHHHh-cCCeEEEEEecCCCh----------HhHHHHhcCCCCCCCCceE
Q 001348 159 GGGLVHLRDRLLSQILDESIRIETPYIPHYIRERL-QCMKVFIVLDDVNKF----------RQLEYLAGGLDRFGLGSRI 227 (1094)
Q Consensus 159 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~----------~~~~~l~~~~~~~~~gsrI 227 (1094)
....... ...+.+.+ ..++.+|++|+++.. .+...++...-. ..+.++
T Consensus 260 ~g~~e~~--------------------l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~ 318 (758)
T 1r6b_X 260 RGDFEKR--------------------FKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRV 318 (758)
T ss_dssp SSCHHHH--------------------HHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEE
T ss_pred cchHHHH--------------------HHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEE
Confidence 0011111 11122222 235789999999754 222233332221 234566
Q ss_pred EEEeCChhhhhh------c-CcCeEEEccCCCHHHHHHHHHhhc
Q 001348 228 IVTSRDKQVLEK------Y-GVDHIYEVEELNNIEALELFCKYA 264 (1094)
Q Consensus 228 iiTTR~~~v~~~------~-~~~~~~~l~~L~~~ea~~Lf~~~a 264 (1094)
|.+|........ + .....+.++..+.++..+++...+
T Consensus 319 I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 319 IGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp EEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred EEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 666654432111 0 112468999999999988887654
No 220
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.47 E-value=0.00041 Score=76.67 Aligned_cols=50 Identities=22% Similarity=0.284 Sum_probs=38.4
Q ss_pred CeeehhHHHHHHHhccccC------C-CCeEEEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 93 GLIGLDARIERIKSLLCIG------L-PNIQIMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 93 ~~vGr~~~~~~l~~~L~~~------~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
.++|.+..++.+...+... . .....+.|+|++|+||||+|+.+++.....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~ 74 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT 74 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC
Confidence 4788888888887776532 1 113589999999999999999999976443
No 221
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.47 E-value=8e-05 Score=80.55 Aligned_cols=155 Identities=16% Similarity=0.212 Sum_probs=84.8
Q ss_pred CCCCCCeeehhHHHHHHHhcccc----------CCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhc
Q 001348 88 SSDFEGLIGLDARIERIKSLLCI----------GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESE 157 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~ 157 (1094)
....++++|.+..++++.+.+.. +....+-|.|+|++|+|||+||+++++.....|-. +. ......
T Consensus 7 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~---v~-~~~~~~ 82 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFS---MG-GSSFIE 82 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCC---CC-SCTTTT
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE---ec-hHHHHH
Confidence 44557899999888888876641 11122347899999999999999999976543311 11 111000
Q ss_pred cCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCChH-----------------hHHHHhcCCCC
Q 001348 158 KGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKFR-----------------QLEYLAGGLDR 220 (1094)
Q Consensus 158 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-----------------~~~~l~~~~~~ 220 (1094)
...+.. .......+......+..+|+||+++... .+..+...+..
T Consensus 83 --------------~~~~~~----~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 144 (268)
T 2r62_A 83 --------------MFVGLG----ASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDG 144 (268)
T ss_dssp --------------SCSSSC----SSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTC
T ss_pred --------------hhcchH----HHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhC
Confidence 000000 0001122222223456799999995431 12233333332
Q ss_pred CC---CCceEEEEeCChhhhh-h-c---CcCeEEEccCCCHHHHHHHHHhhc
Q 001348 221 FG---LGSRIIVTSRDKQVLE-K-Y---GVDHIYEVEELNNIEALELFCKYA 264 (1094)
Q Consensus 221 ~~---~gsrIiiTTR~~~v~~-~-~---~~~~~~~l~~L~~~ea~~Lf~~~a 264 (1094)
.. ....||.||.....+. . . .....+.++..+.++..+++...+
T Consensus 145 ~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 145 FGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp SSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred cccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 21 1245666666553221 1 1 234567788888888888887665
No 222
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.45 E-value=0.00077 Score=76.03 Aligned_cols=172 Identities=19% Similarity=0.243 Sum_probs=98.7
Q ss_pred CCCCeeehhHHHHHHHhcccc-----------CCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhcc
Q 001348 90 DFEGLIGLDARIERIKSLLCI-----------GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEK 158 (1094)
Q Consensus 90 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 158 (1094)
..+++.|.+..+++|.+.+.. +-.-.+-|.++|++|.|||.||++++++....| +.....+....
T Consensus 180 ~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~f----i~v~~s~l~sk 255 (437)
T 4b4t_I 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATF----LRIVGSELIQK 255 (437)
T ss_dssp CGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEE----EEEESGGGCCS
T ss_pred cceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCE----EEEEHHHhhhc
Confidence 345688999999988886632 223457899999999999999999999876544 22222222221
Q ss_pred CCCh-HHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCCh----------------HhHHHHhcCCCCC
Q 001348 159 GGGL-VHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKF----------------RQLEYLAGGLDRF 221 (1094)
Q Consensus 159 ~~~~-~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~----------------~~~~~l~~~~~~~ 221 (1094)
..+- ....+.++.. .-.....+|++|+++.. ..+..++...+.+
T Consensus 256 ~vGesek~ir~lF~~-------------------Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~ 316 (437)
T 4b4t_I 256 YLGDGPRLCRQIFKV-------------------AGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGF 316 (437)
T ss_dssp SSSHHHHHHHHHHHH-------------------HHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHC
T ss_pred cCchHHHHHHHHHHH-------------------HHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCc
Confidence 1111 1222222111 11246789999988532 1122333322222
Q ss_pred --CCCceEEEEeCChhhhhh-c----CcCeEEEccCCCHHHHHHHHHhhcccCCC-CCchHHHHHHHHHHHhCCC
Q 001348 222 --GLGSRIIVTSRDKQVLEK-Y----GVDHIYEVEELNNIEALELFCKYAFRQNH-HPQDLMVISGRVVDYARGN 288 (1094)
Q Consensus 222 --~~gsrIiiTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~af~~~~-~~~~~~~~~~~i~~~~~Gl 288 (1094)
..+..||.||-....+.. + ..+..++++..+.++..++|..+.-+-.. ...++ ..+++.+.|.
T Consensus 317 ~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl----~~LA~~T~Gf 387 (437)
T 4b4t_I 317 DDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNL----ETLVTTKDDL 387 (437)
T ss_dssp CCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCH----HHHHHHCCSC
T ss_pred CCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCC
Confidence 223456667765544332 1 24567889999999999999877633221 12234 3455666664
No 223
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.44 E-value=9.3e-05 Score=79.19 Aligned_cols=65 Identities=20% Similarity=0.245 Sum_probs=44.3
Q ss_pred CCCCCCEEeCCCCCCCCCC---ccccCCCCCCeeecCCCCCcccchhhcCCC--CCCEEEccCCCCCCCCC
Q 001348 730 GLSYLTELDLSCCNLIEIP---QDIGCLSLLRSLDLRKNNFEYLPASMKHLS--KLKSLDLSCCNMLQSLP 795 (1094)
Q Consensus 730 ~l~~L~~L~Ls~n~l~~lp---~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~--~L~~L~L~~~~~l~~lp 795 (1094)
++++|+.|+|++|+++.++ ..+..+++|+.|+|++|+|+.+. .+..+. +|++|+|++|++.+.+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccC
Confidence 4566777777777776543 44566778888888888777663 233333 78888888888777665
No 224
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.43 E-value=0.00027 Score=78.00 Aligned_cols=49 Identities=22% Similarity=0.164 Sum_probs=37.3
Q ss_pred CeeehhHHHHHHHhcccc------------CCCCeEEEEEEecCCCchhhHHHHHHHHHhc
Q 001348 93 GLIGLDARIERIKSLLCI------------GLPNIQIMGIWGMGGIGKTTIAGVLFNQISR 141 (1094)
Q Consensus 93 ~~vGr~~~~~~l~~~L~~------------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 141 (1094)
.++|.+..++.+...+.. .......+.|+|++|+|||++|+++++....
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~ 76 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 578888888888776643 0112456789999999999999999987743
No 225
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.40 E-value=0.0016 Score=74.38 Aligned_cols=171 Identities=19% Similarity=0.230 Sum_probs=93.3
Q ss_pred CCCeeehhHHHHHHHhcccc-----------CCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccC
Q 001348 91 FEGLIGLDARIERIKSLLCI-----------GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKG 159 (1094)
Q Consensus 91 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 159 (1094)
.+++.|.+..+++|.+.+.. +-.-.+-|.++|++|.|||+||+++++.....| +.....+.....
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~----~~v~~~~l~~~~ 246 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAF----IRVNGSEFVHKY 246 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEE----EEEEGGGTCCSS
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe----EEEecchhhccc
Confidence 35689999999998886642 223467799999999999999999999875443 222222221111
Q ss_pred CCh-HHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCCh----------------HhHHHHhcCCCC--
Q 001348 160 GGL-VHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKF----------------RQLEYLAGGLDR-- 220 (1094)
Q Consensus 160 ~~~-~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~----------------~~~~~l~~~~~~-- 220 (1094)
.|- ....+.++. ..-...+.++++|+++.. ..+..++...+.
T Consensus 247 ~Ge~e~~ir~lF~-------------------~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~ 307 (428)
T 4b4t_K 247 LGEGPRMVRDVFR-------------------LARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFD 307 (428)
T ss_dssp CSHHHHHHHHHHH-------------------HHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSC
T ss_pred cchhHHHHHHHHH-------------------HHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCC
Confidence 111 112222211 111346789999988321 012333322221
Q ss_pred CCCCceEEEEeCChhhhh-----hcCcCeEEEccCC-CHHHHHHHHHhhcccCCC-CCchHHHHHHHHHHHhCCC
Q 001348 221 FGLGSRIIVTSRDKQVLE-----KYGVDHIYEVEEL-NNIEALELFCKYAFRQNH-HPQDLMVISGRVVDYARGN 288 (1094)
Q Consensus 221 ~~~gsrIiiTTR~~~v~~-----~~~~~~~~~l~~L-~~~ea~~Lf~~~af~~~~-~~~~~~~~~~~i~~~~~Gl 288 (1094)
...+-.||.||.....+. .-..+..++++.+ +.++..++|..+.-+... +..++ ..+++.+.|.
T Consensus 308 ~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl----~~lA~~t~G~ 378 (428)
T 4b4t_K 308 QSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADL----DSLIIRNDSL 378 (428)
T ss_dssp SSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCH----HHHHHHTTTC
T ss_pred CCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCH----HHHHHHCCCC
Confidence 123445666776544322 1124567788755 556666777666533221 22234 4555666664
No 226
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.38 E-value=0.001 Score=71.65 Aligned_cols=50 Identities=24% Similarity=0.169 Sum_probs=34.4
Q ss_pred CCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHh
Q 001348 91 FEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 91 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
.+.++|.+..+.++.+.+..-......|.|+|.+|+|||++|+++++...
T Consensus 5 f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp -----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred cccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 45689999988888766543122234677999999999999999998643
No 227
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.30 E-value=0.0014 Score=81.82 Aligned_cols=149 Identities=17% Similarity=0.145 Sum_probs=83.7
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccc------cceEEeeechhhhccCCC
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKF------ESKCFMANVREESEKGGG 161 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~~~~~~~~~~~~ 161 (1094)
+...+.+||++.+++++...|.... ..-|.++|++|+||||+|+.+++.+.... ...++..+.
T Consensus 176 ~~~ld~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--------- 244 (758)
T 3pxi_A 176 EDSLDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--------- 244 (758)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred hCCCCCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------
Confidence 3445679999999999999986532 23467999999999999999999864321 112221111
Q ss_pred hHHHHHHHHHhhhccCCcccCCCc-hHHHHHHhcCCeEEEEEecCCChHhHHHHhcCCCCCCCCceEEEEeCChhhh---
Q 001348 162 LVHLRDRLLSQILDESIRIETPYI-PHYIRERLQCMKVFIVLDDVNKFRQLEYLAGGLDRFGLGSRIIVTSRDKQVL--- 237 (1094)
Q Consensus 162 ~~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~--- 237 (1094)
+.......... ...+......++.+|++| ...+....+...+. ....++|.||......
T Consensus 245 -------------g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~ 307 (758)
T 3pxi_A 245 -------------GTKYRGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYI 307 (758)
T ss_dssp ---------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHH
T ss_pred -------------cccccchHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHh
Confidence 00000001111 223333334577899999 22233333443333 2235666666544410
Q ss_pred ---hh-cCcCeEEEccCCCHHHHHHHHHhhc
Q 001348 238 ---EK-YGVDHIYEVEELNNIEALELFCKYA 264 (1094)
Q Consensus 238 ---~~-~~~~~~~~l~~L~~~ea~~Lf~~~a 264 (1094)
.. ......+.++.++.++..+++...+
T Consensus 308 ~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 308 EKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp TTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 00 0112579999999999999998654
No 228
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.24 E-value=0.0014 Score=71.67 Aligned_cols=29 Identities=31% Similarity=0.604 Sum_probs=24.9
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
.++.+.++|++|+|||+||+++++.....
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~~ 63 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGIN 63 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 45688899999999999999999987433
No 229
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.23 E-value=0.00023 Score=70.67 Aligned_cols=84 Identities=15% Similarity=0.235 Sum_probs=58.9
Q ss_pred CccEEEeccCCCCcc-ccccccccccceeecccccc-cccchhhhhcC----CcccEEeccCCcccCc-cchhhcccCcc
Q 001348 569 NVRELYLRGTPIEYV-PSSIDCLAKLEYLDLGHCTI-LESISTSICKL----KSLLKLCLDNCSKLES-FPEILEKMGCL 641 (1094)
Q Consensus 569 ~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~-~~~lp~~i~~l----~~L~~L~L~~~~~~~~-~p~~l~~l~~L 641 (1094)
+|+.|+|+++.|+.. -..+..+++|+.|+|++|.. +..--..++.+ ++|++|+|++|..++. --..+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 678888888776632 23467889999999999964 33333345544 4799999999975443 33456788999
Q ss_pred ceeeccCcc-cc
Q 001348 642 EDIDLEGTA-IT 652 (1094)
Q Consensus 642 ~~L~L~~~~-i~ 652 (1094)
++|+++++. ++
T Consensus 142 ~~L~L~~c~~It 153 (176)
T 3e4g_A 142 KYLFLSDLPGVK 153 (176)
T ss_dssp CEEEEESCTTCC
T ss_pred CEEECCCCCCCC
Confidence 999999874 54
No 230
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.20 E-value=0.001 Score=73.08 Aligned_cols=48 Identities=21% Similarity=0.293 Sum_probs=37.3
Q ss_pred CCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHH
Q 001348 92 EGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 92 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
+.++|....+.++.+.+..-......|.|+|.+|+|||++|+++++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 358999999988888775422223457799999999999999999854
No 231
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.14 E-value=0.00011 Score=71.14 Aligned_cols=48 Identities=15% Similarity=0.062 Sum_probs=33.7
Q ss_pred CCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHH
Q 001348 92 EGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 92 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
..++|++..++++.+.+..-.....-|.|+|.+|.|||++|+++++..
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 357899999888888765311222347799999999999999998754
No 232
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.10 E-value=0.0012 Score=72.38 Aligned_cols=146 Identities=12% Similarity=0.069 Sum_probs=87.6
Q ss_pred ehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHh---ccccceEEeeechhhhccCCChHHHHHHHHHh
Q 001348 96 GLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQIS---RKFESKCFMANVREESEKGGGLVHLRDRLLSQ 172 (1094)
Q Consensus 96 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~---~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 172 (1094)
|-+..++.|.+.+..+. .+...++|+.|.||||+|+++++... ........+.. +....++.++. ++...
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~----~~~~~~id~ir-~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDP----EGENIGIDDIR-TIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECC----SSSCBCHHHHH-HHHHH
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcC----CcCCCCHHHHH-HHHHH
Confidence 44556677777776443 67888999999999999999987521 11222233321 11113333332 23333
Q ss_pred hhccCCcccCCCchHHHHHHhcCCeEEEEEecCCCh--HhHHHHhcCCCCCCCCceEEEEeCCh-hhhhhcCcCeEEEcc
Q 001348 173 ILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKF--RQLEYLAGGLDRFGLGSRIIVTSRDK-QVLEKYGVDHIYEVE 249 (1094)
Q Consensus 173 l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~-~v~~~~~~~~~~~l~ 249 (1094)
..... ..+++-++|+|+++.. ...+.|+..+....+.+.+|++|.+. .+....... .++++
T Consensus 74 ~~~~p---------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~ 137 (305)
T 2gno_A 74 LNYSP---------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVV 137 (305)
T ss_dssp HTSCC---------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEE
T ss_pred Hhhcc---------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCC
Confidence 32110 1235678899999654 34555555444445577777777554 344444444 89999
Q ss_pred CCCHHHHHHHHHhhc
Q 001348 250 ELNNIEALELFCKYA 264 (1094)
Q Consensus 250 ~L~~~ea~~Lf~~~a 264 (1094)
++++++..+.+.+.+
T Consensus 138 ~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 138 VNVPKEFRDLVKEKI 152 (305)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999888775
No 233
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.10 E-value=0.00049 Score=66.87 Aligned_cols=44 Identities=20% Similarity=0.215 Sum_probs=30.7
Q ss_pred CeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhc
Q 001348 93 GLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISR 141 (1094)
Q Consensus 93 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 141 (1094)
..+|.+.+.-.....+ .-..++|+|..|.||||||+.++.....
T Consensus 19 f~~g~n~~~~~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 19 FLGTENAELVYVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCSCCTHHHHHHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred cCcCccHHHHHHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3456555433332222 3358999999999999999999997654
No 234
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.05 E-value=0.0047 Score=65.82 Aligned_cols=153 Identities=14% Similarity=0.153 Sum_probs=80.8
Q ss_pred CCCCCeeehhHHHHHHHhcccc--C--------CCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhcc
Q 001348 89 SDFEGLIGLDARIERIKSLLCI--G--------LPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEK 158 (1094)
Q Consensus 89 ~~~~~~vGr~~~~~~l~~~L~~--~--------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 158 (1094)
...++++|.+...+++.++... . -.-.+-+.|+|++|.||||||++++...... .+.+. .......
T Consensus 13 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~---~i~~~-~~~~~~~ 88 (254)
T 1ixz_A 13 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP---FITAS-GSDFVEM 88 (254)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCC---EEEEE-HHHHHHS
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC---EEEee-HHHHHHH
Confidence 3446788887766666554321 0 0111238999999999999999999876422 22222 1111111
Q ss_pred CCChHHHHHHHHHhhhccCCcccCCCchHHHHHHh-cCCeEEEEEecCCCh----------------HhHHHHhcCCCCC
Q 001348 159 GGGLVHLRDRLLSQILDESIRIETPYIPHYIRERL-QCMKVFIVLDDVNKF----------------RQLEYLAGGLDRF 221 (1094)
Q Consensus 159 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~----------------~~~~~l~~~~~~~ 221 (1094)
..+ ...+. ...+.+.. .....++++|+++.. ..+..+...+..+
T Consensus 89 ~~~--~~~~~-----------------i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~ 149 (254)
T 1ixz_A 89 FVG--VGAAR-----------------VRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 149 (254)
T ss_dssp CTT--HHHHH-----------------HHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTC
T ss_pred Hhh--HHHHH-----------------HHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCC
Confidence 000 00000 11122222 234578999998422 0122332222211
Q ss_pred --CCCceEEEEeCChhhhhh-----cCcCeEEEccCCCHHHHHHHHHhhc
Q 001348 222 --GLGSRIIVTSRDKQVLEK-----YGVDHIYEVEELNNIEALELFCKYA 264 (1094)
Q Consensus 222 --~~gsrIiiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a 264 (1094)
.....++.||....++.. ...+..+.++..+.++-.+++..++
T Consensus 150 ~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 199 (254)
T 1ixz_A 150 EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 199 (254)
T ss_dssp CTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHH
T ss_pred CCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHH
Confidence 122345556666655432 1345788999999998888887665
No 235
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.03 E-value=0.0017 Score=79.82 Aligned_cols=172 Identities=17% Similarity=0.220 Sum_probs=97.6
Q ss_pred CCCeeehhHHHHHHHhcccc-----------CCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccC
Q 001348 91 FEGLIGLDARIERIKSLLCI-----------GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKG 159 (1094)
Q Consensus 91 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 159 (1094)
.+++.|.+..+++|.+.+.. +-.-++-|.++|++|.|||+||++++++.... ++..+..+.....
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~----~~~v~~~~l~sk~ 278 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF----FFLINGPEIMSKL 278 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE----EEEEEHHHHHSSC
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe----EEEEEhHHhhccc
Confidence 45688999988888876532 11346789999999999999999999866443 2332222221111
Q ss_pred CC-hHHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCChH-------------hHHHHhcCCCCC--CC
Q 001348 160 GG-LVHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKFR-------------QLEYLAGGLDRF--GL 223 (1094)
Q Consensus 160 ~~-~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-------------~~~~l~~~~~~~--~~ 223 (1094)
.+ .....+. ......+..+.+|++|+++..- ....|+...... ..
T Consensus 279 ~gese~~lr~-------------------lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~ 339 (806)
T 3cf2_A 279 AGESESNLRK-------------------AFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA 339 (806)
T ss_dssp TTHHHHHHHH-------------------HHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGG
T ss_pred chHHHHHHHH-------------------HHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccC
Confidence 11 1111111 1222234568899999985321 122233222111 12
Q ss_pred CceEEEEeCChhhhh-hc----CcCeEEEccCCCHHHHHHHHHhhcccCCC-CCchHHHHHHHHHHHhCCCc
Q 001348 224 GSRIIVTSRDKQVLE-KY----GVDHIYEVEELNNIEALELFCKYAFRQNH-HPQDLMVISGRVVDYARGNP 289 (1094)
Q Consensus 224 gsrIiiTTR~~~v~~-~~----~~~~~~~l~~L~~~ea~~Lf~~~af~~~~-~~~~~~~~~~~i~~~~~GlP 289 (1094)
+-.||.||.....+. .+ ..+..++++..+.++-.++|..+.-+... ...++ ..+++.+.|.-
T Consensus 340 ~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl----~~lA~~T~Gfs 407 (806)
T 3cf2_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGHV 407 (806)
T ss_dssp CEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCH----HHHHHHCCSCC
T ss_pred CEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhcCCCC
Confidence 334555665543322 11 34678999999999999999887633221 12233 45666676654
No 236
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.01 E-value=0.011 Score=68.99 Aligned_cols=51 Identities=20% Similarity=0.201 Sum_probs=38.9
Q ss_pred CCCCeeehhHHHHHHHhccc---cCCCCeEEEEEEecCCCchhhHHHHHHHHHh
Q 001348 90 DFEGLIGLDARIERIKSLLC---IGLPNIQIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 90 ~~~~~vGr~~~~~~l~~~L~---~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
..++++|.+..++++..++. .+....+-|.++|++|.|||++|+++++.+.
T Consensus 35 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 35 AASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp EETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred chhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 34789999998876655442 2322345688999999999999999999765
No 237
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.94 E-value=0.0024 Score=69.22 Aligned_cols=154 Identities=14% Similarity=0.161 Sum_probs=82.2
Q ss_pred CCCCCCeeehhHHHHHHHhcccc--C--------CCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhc
Q 001348 88 SSDFEGLIGLDARIERIKSLLCI--G--------LPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESE 157 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~--~--------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~ 157 (1094)
....++++|.+..++++.++... . -.-.+-|.|+|++|.||||||++++..... ..+.+.. .....
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~---~~i~~~~-~~~~~ 111 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITASG-SDFVE 111 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTC---CEEEEEH-HHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCC---CEEEecH-HHHHH
Confidence 44556788988877777665421 0 011123899999999999999999987642 2223221 11111
Q ss_pred cCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHh-cCCeEEEEEecCCCh----------------HhHHHHhcCCCC
Q 001348 158 KGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERL-QCMKVFIVLDDVNKF----------------RQLEYLAGGLDR 220 (1094)
Q Consensus 158 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~----------------~~~~~l~~~~~~ 220 (1094)
...+ ...+. ...+.+.. .....++|+|+++.. ..+..+...+..
T Consensus 112 ~~~~--~~~~~-----------------i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsg 172 (278)
T 1iy2_A 112 MFVG--VGAAR-----------------VRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG 172 (278)
T ss_dssp STTT--HHHHH-----------------HHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTT
T ss_pred HHhh--HHHHH-----------------HHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhC
Confidence 1000 00000 11111111 234578999998421 112233322222
Q ss_pred CC--CCceEEEEeCChhhhhh-----cCcCeEEEccCCCHHHHHHHHHhhc
Q 001348 221 FG--LGSRIIVTSRDKQVLEK-----YGVDHIYEVEELNNIEALELFCKYA 264 (1094)
Q Consensus 221 ~~--~gsrIiiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a 264 (1094)
.. ....++.||....++.. ......+.++..+.++-.+++..++
T Consensus 173 g~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 223 (278)
T 1iy2_A 173 FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 223 (278)
T ss_dssp CCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHH
Confidence 11 12345556666554321 1345688999999998888887665
No 238
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.93 E-value=0.0041 Score=72.68 Aligned_cols=151 Identities=14% Similarity=0.180 Sum_probs=85.7
Q ss_pred CCCCCCeeehhHHHHHHHhcccc--C--------CCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhc
Q 001348 88 SSDFEGLIGLDARIERIKSLLCI--G--------LPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESE 157 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~--~--------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~ 157 (1094)
....++++|.+..++++.++... . ..-.+-|.|+|++|.||||||++++...... .+.+. ..+...
T Consensus 27 ~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~---~i~i~-g~~~~~ 102 (499)
T 2dhr_A 27 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP---FITAS-GSDFVE 102 (499)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCC---EEEEE-GGGGTS
T ss_pred CCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---EEEEe-hhHHHH
Confidence 44567899999887777665421 0 0112348999999999999999999876422 12222 211111
Q ss_pred cCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhcC----CeEEEEEecCCCh----------------HhHHHHhcC
Q 001348 158 KGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQC----MKVFIVLDDVNKF----------------RQLEYLAGG 217 (1094)
Q Consensus 158 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~----kr~LlVLDdv~~~----------------~~~~~l~~~ 217 (1094)
...+. . ...++..++. ...++++|+++.. ..+..++..
T Consensus 103 ~~~g~--~--------------------~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~ 160 (499)
T 2dhr_A 103 MFVGV--G--------------------AARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVE 160 (499)
T ss_dssp SCTTH--H--------------------HHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHH
T ss_pred hhhhh--H--------------------HHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHH
Confidence 10110 0 1122222221 3478999998432 113334333
Q ss_pred CCCC--CCCceEEEEeCChhhhhh-----cCcCeEEEccCCCHHHHHHHHHhhc
Q 001348 218 LDRF--GLGSRIIVTSRDKQVLEK-----YGVDHIYEVEELNNIEALELFCKYA 264 (1094)
Q Consensus 218 ~~~~--~~gsrIiiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a 264 (1094)
+..+ ..+..|+.||....++.. ...+..+.++..+.++-.+++..++
T Consensus 161 Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~ 214 (499)
T 2dhr_A 161 MDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 214 (499)
T ss_dssp GGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTT
T ss_pred hcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHH
Confidence 3222 223455666666654331 1245689999999999999998775
No 239
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.90 E-value=0.02 Score=61.58 Aligned_cols=151 Identities=15% Similarity=0.120 Sum_probs=80.2
Q ss_pred CCCeeehhHHHHHHHhcccc-----------CCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccC
Q 001348 91 FEGLIGLDARIERIKSLLCI-----------GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKG 159 (1094)
Q Consensus 91 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 159 (1094)
.+++.|.+...++|.+.+.. +-.-.+-++|+|++|.||||||++++...... .+++. ..+....
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~---~i~i~-g~~l~~~- 83 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLN---FISVK-GPELLNM- 83 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCE---EEEEE-TTTTCSS-
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCC---EEEEE-cHHHHhh-
Confidence 35577777777666654311 00111239999999999999999999875432 22332 1111111
Q ss_pred CChHHHHHHHHHhhhccCCcccCCCchHHHHHHh-cCCeEEEEEecCCChH-------------hHHHHhcCCCC--CCC
Q 001348 160 GGLVHLRDRLLSQILDESIRIETPYIPHYIRERL-QCMKVFIVLDDVNKFR-------------QLEYLAGGLDR--FGL 223 (1094)
Q Consensus 160 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~~-------------~~~~l~~~~~~--~~~ 223 (1094)
......+. + ..+.+.. .....++++|+++... ....+...+.. ...
T Consensus 84 -~~~~~~~~-i----------------~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~ 145 (274)
T 2x8a_A 84 -YVGESERA-V----------------RQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQ 145 (274)
T ss_dssp -TTHHHHHH-H----------------HHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTT
T ss_pred -hhhHHHHH-H----------------HHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccC
Confidence 01111111 1 1111111 2356788889885421 11222222211 122
Q ss_pred CceEEEEeCChhhhhhc-----CcCeEEEccCCCHHHHHHHHHhhc
Q 001348 224 GSRIIVTSRDKQVLEKY-----GVDHIYEVEELNNIEALELFCKYA 264 (1094)
Q Consensus 224 gsrIiiTTR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a 264 (1094)
..-++.+|....++... ..+..+.++..+.++..+++..+.
T Consensus 146 ~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 146 QVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp CEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred CEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 34566677776654321 356788999999999999998765
No 240
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.82 E-value=0.0053 Score=73.08 Aligned_cols=51 Identities=31% Similarity=0.428 Sum_probs=36.8
Q ss_pred CeeehhHHHHHHHhcccc----CCCCeEEEEEEecCCCchhhHHHHHHHHHhccc
Q 001348 93 GLIGLDARIERIKSLLCI----GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKF 143 (1094)
Q Consensus 93 ~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 143 (1094)
+++|.+...+.+.+.+.. .......+.|+|++|+||||||+.++......|
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~ 136 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKF 136 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEE
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCe
Confidence 378888777766544321 112356899999999999999999999775443
No 241
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.80 E-value=0.0027 Score=79.35 Aligned_cols=152 Identities=19% Similarity=0.278 Sum_probs=86.0
Q ss_pred CCCCeeehhHHHHHHHhcccc-----------CCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhcc
Q 001348 90 DFEGLIGLDARIERIKSLLCI-----------GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEK 158 (1094)
Q Consensus 90 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 158 (1094)
..++++|.+..+++|.+++.. .-...+.|.|+|++|+||||||++++......| +.+ +..+....
T Consensus 202 ~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~---i~v-~~~~l~~~ 277 (806)
T 1ypw_A 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLI-NGPEIMSK 277 (806)
T ss_dssp CGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE---EEE-EHHHHSSS
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE---EEE-EchHhhhh
Confidence 446799999999888887743 223356799999999999999999998664433 222 21111111
Q ss_pred CCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCCh----------------HhHHHHhcCCCCCC
Q 001348 159 GGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKF----------------RQLEYLAGGLDRFG 222 (1094)
Q Consensus 159 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~----------------~~~~~l~~~~~~~~ 222 (1094)
..+ ...+. + ...+.........++++|+++.. .++-.+...... .
T Consensus 278 ~~g--~~~~~-l---------------~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~-~ 338 (806)
T 1ypw_A 278 LAG--ESESN-L---------------RKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ-R 338 (806)
T ss_dssp STT--HHHHH-H---------------HHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCT-T
T ss_pred hhh--hHHHH-H---------------HHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcc-c
Confidence 000 00000 0 11122222335789999998321 112223332221 2
Q ss_pred CCceEEEEeCChhhhhh-c----CcCeEEEccCCCHHHHHHHHHhhc
Q 001348 223 LGSRIIVTSRDKQVLEK-Y----GVDHIYEVEELNNIEALELFCKYA 264 (1094)
Q Consensus 223 ~gsrIiiTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~a 264 (1094)
.+..+|.||....-+.. + .....+.+...+.++..+++..++
T Consensus 339 ~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 339 AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp SCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred ccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 34456666665432221 1 234667888889999988888765
No 242
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.72 E-value=0.0044 Score=77.34 Aligned_cols=150 Identities=21% Similarity=0.190 Sum_probs=82.0
Q ss_pred CCeeehhHHHHHHHhccccCC-------CCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHH
Q 001348 92 EGLIGLDARIERIKSLLCIGL-------PNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVH 164 (1094)
Q Consensus 92 ~~~vGr~~~~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~ 164 (1094)
..++|.+..++.+...+.... .....+.++|++|+|||++|+++++.....-...+.+. ..+........
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~-~s~~~~~~~~~-- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRID-MSEYMEKHSTS-- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEE-GGGGCSSCCCC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEe-chhcccccccc--
Confidence 458999998888877765311 12247899999999999999999997643322233332 33322220110
Q ss_pred HHHHHHHhhhccCCcccCCCchHHHHHHhcCCeEEEEEecCCCh--HhHHHHhcCCCC-----------CCCCceEEEEe
Q 001348 165 LRDRLLSQILDESIRIETPYIPHYIRERLQCMKVFIVLDDVNKF--RQLEYLAGGLDR-----------FGLGSRIIVTS 231 (1094)
Q Consensus 165 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~-----------~~~gsrIiiTT 231 (1094)
.......+++ ...-+|+||+++.. +....|...+.. .....+||.||
T Consensus 568 -----------------~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tt 627 (758)
T 3pxi_A 568 -----------------GGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTS 627 (758)
T ss_dssp --------------------CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEE
T ss_pred -----------------cchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeC
Confidence 0001222222 13348899999654 223333322111 12356888888
Q ss_pred CC-----hhhh----hh------cCcCeEEEccCCCHHHHHHHHHhhc
Q 001348 232 RD-----KQVL----EK------YGVDHIYEVEELNNIEALELFCKYA 264 (1094)
Q Consensus 232 R~-----~~v~----~~------~~~~~~~~l~~L~~~ea~~Lf~~~a 264 (1094)
.. ..+. .. ...+.++.+++++.++..+++...+
T Consensus 628 n~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 628 NVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp SSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 72 1110 00 1234688889998888877776543
No 243
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.49 E-value=0.0075 Score=66.41 Aligned_cols=116 Identities=20% Similarity=0.170 Sum_probs=66.6
Q ss_pred cccccCcHHHHHHHHHHhhc-cChHHHHHHHHHHHHHhhccCCCCCCCchhHHHHHHHHHHHHhcccccccCCCCCCeee
Q 001348 18 VRKQTGRVGDAFVVHEKQFR-EMPEKVQKWRAVLTEASNLSGWDSKKIRPEAKLVDEIVKDILKKLNYFSVSSDFEGLIG 96 (1094)
Q Consensus 18 vr~q~g~~~~~~~~~~~~~~-~~~~~~~~w~~al~~~a~~~g~~~~~~~~e~~~i~~i~~~v~~~l~~~~~~~~~~~~vG 96 (1094)
+.+.+.+|+.++.+.-.+.+ -..+.++.++++|-++ .-..+..+++++.+.++..... ... . =
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-----------dv~~~~~~~~~~~~~~~~~~~~-~~~--~--~ 74 (320)
T 1zu4_A 11 MLKSAFNFSKDIKKLSKKYKQADDEFFEELEDVLIQT-----------DMGMKMVLKVSNLVRKKTKRDT-SFE--N--I 74 (320)
T ss_dssp THHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHT-----------TCCHHHHHHHHHHHHHHCCTTC-CHH--H--H
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHc-----------CCCHHHHHHHHHHHHHHHhhch-hHH--H--H
Confidence 44556677777777765422 2344456666666553 2233455666666655543221 000 0 1
Q ss_pred hhHHHHHHHhccccC------------CCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEee
Q 001348 97 LDARIERIKSLLCIG------------LPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMA 150 (1094)
Q Consensus 97 r~~~~~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 150 (1094)
++.-.++|.+++... ....++|+|+|.+|+||||++..++..++.. ...+.+.
T Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~-g~kVlli 139 (320)
T 1zu4_A 75 KDALVESLYQAYTDNDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL-GYKVLIA 139 (320)
T ss_dssp HHHHHHHHHHHHHCSCC----CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred HHHHHHHHHHHhCcccccccccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEE
Confidence 122234444444322 2346899999999999999999999876654 3444443
No 244
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.47 E-value=0.0076 Score=65.82 Aligned_cols=52 Identities=23% Similarity=0.275 Sum_probs=36.1
Q ss_pred hHHHHHHHhccccC------CCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEee
Q 001348 98 DARIERIKSLLCIG------LPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMA 150 (1094)
Q Consensus 98 ~~~~~~l~~~L~~~------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 150 (1094)
..-.++|.+.+... ....++|+|+|.+|+||||++..++..++.. ...+.+.
T Consensus 81 ~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~-g~kV~lv 138 (306)
T 1vma_A 81 ESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE-GKSVVLA 138 (306)
T ss_dssp HHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred HHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc-CCEEEEE
Confidence 34455666666432 2346899999999999999999999877654 3344443
No 245
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.07 E-value=0.012 Score=64.70 Aligned_cols=62 Identities=15% Similarity=0.154 Sum_probs=39.3
Q ss_pred CCCCCeeehh----HHHHHHHhccccCCC-CeEEEEEEecCCCchhhHHHHHHHHHh-ccccceEEee
Q 001348 89 SDFEGLIGLD----ARIERIKSLLCIGLP-NIQIMGIWGMGGIGKTTIAGVLFNQIS-RKFESKCFMA 150 (1094)
Q Consensus 89 ~~~~~~vGr~----~~~~~l~~~L~~~~~-~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~ 150 (1094)
...+.|++.+ ..++.+.+++..-.. ..+.+.|+|++|+|||+||+++++... .+-..+.|+.
T Consensus 121 ~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 121 IHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp CCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred CCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 3456677533 234444455543211 246788999999999999999999776 4433344443
No 246
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.81 E-value=0.018 Score=56.96 Aligned_cols=20 Identities=40% Similarity=0.611 Sum_probs=18.7
Q ss_pred EEEEEEecCCCchhhHHHHH
Q 001348 116 QIMGIWGMGGIGKTTIAGVL 135 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v 135 (1094)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999999
No 247
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.80 E-value=0.011 Score=73.90 Aligned_cols=48 Identities=21% Similarity=0.259 Sum_probs=37.2
Q ss_pred CCeeehhHHHHHHHhccccC-------CCCeEEEEEEecCCCchhhHHHHHHHHH
Q 001348 92 EGLIGLDARIERIKSLLCIG-------LPNIQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 92 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
..++|.+..++.+...+... ......+.++|++|+|||++|+++++..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 35889998888887766421 1123478999999999999999999877
No 248
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.79 E-value=0.049 Score=54.31 Aligned_cols=24 Identities=29% Similarity=0.453 Sum_probs=21.7
Q ss_pred EEEEEecCCCchhhHHHHHHHHHh
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
.++|+|+.|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998664
No 249
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.79 E-value=0.019 Score=62.56 Aligned_cols=28 Identities=36% Similarity=0.426 Sum_probs=24.8
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
.++|+++|.+|+||||++..++..+..+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~ 125 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK 125 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 6799999999999999999999876554
No 250
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.57 E-value=0.0047 Score=62.38 Aligned_cols=33 Identities=9% Similarity=0.041 Sum_probs=15.6
Q ss_pred CCCCEEeCCCCCCCC-----CCccccCCCCCCeeecCC
Q 001348 732 SYLTELDLSCCNLIE-----IPQDIGCLSLLRSLDLRK 764 (1094)
Q Consensus 732 ~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~L~~ 764 (1094)
+.|++|+|++|.|.+ +-..+..-+.|+.|+|++
T Consensus 98 ~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 98 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 445555555555542 223333444455555554
No 251
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.52 E-value=0.019 Score=62.27 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=21.6
Q ss_pred eEEEEEEecCCCchhhHHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQ 138 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~ 138 (1094)
-+++.|+|++|+||||||.+++..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 367789999999999999999886
No 252
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.52 E-value=0.019 Score=54.11 Aligned_cols=55 Identities=24% Similarity=0.265 Sum_probs=42.1
Q ss_pred CEEeCCCCCCC--CCCccccCCCCCCeeecCCCCCcccchh-hcCCCCCCEEEccCCCCC
Q 001348 735 TELDLSCCNLI--EIPQDIGCLSLLRSLDLRKNNFEYLPAS-MKHLSKLKSLDLSCCNML 791 (1094)
Q Consensus 735 ~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~~~~l 791 (1094)
..++.++++++ .+|..+ .++|+.|+|++|+|+.+|.. +..+++|+.|+|++|+..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 46777788887 777653 34788888888888888764 577888999999888753
No 253
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.47 E-value=0.02 Score=59.23 Aligned_cols=33 Identities=18% Similarity=0.055 Sum_probs=25.4
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhccccceEEee
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMA 150 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 150 (1094)
-.+++|+|.+|+||||||+.++. . .-..++|+.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~--~-~~~~v~~i~ 52 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL--L-SGKKVAYVD 52 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH--H-HCSEEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--H-cCCcEEEEE
Confidence 35899999999999999999987 2 223455654
No 254
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.45 E-value=0.033 Score=60.71 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=27.4
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHhccccceEEe
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFM 149 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 149 (1094)
...+|+|+|++|+||||+++.++..++.. ...+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~-~g~V~l 135 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMF 135 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEE
Confidence 45799999999999999999999866543 344444
No 255
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.44 E-value=0.0053 Score=65.62 Aligned_cols=112 Identities=13% Similarity=0.117 Sum_probs=62.6
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHh
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERL 193 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 193 (1094)
.-.+++|+|+.|.|||||++.+...+...+.+.+++....-.... .... .+ +...............+.+.|
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~-~~~~----~~---v~q~~~gl~~~~l~~~la~aL 95 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF-KHKK----SI---VNQREVGEDTKSFADALRAAL 95 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC-CCSS----SE---EEEEEBTTTBSCHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec-CCcc----ee---eeHHHhCCCHHHHHHHHHHHH
Confidence 346999999999999999999998665443455544321000000 0000 00 000000001111255666777
Q ss_pred cCCeEEEEEecCCChHhHHHHhcCCCCCCCCceEEEEeCChhh
Q 001348 194 QCMKVFIVLDDVNKFRQLEYLAGGLDRFGLGSRIIVTSRDKQV 236 (1094)
Q Consensus 194 ~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v 236 (1094)
..++=+|++|...|.+....+.... ..|..|++||-+..+
T Consensus 96 ~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 96 REDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 135 (261)
T ss_dssp HHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred hhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchH
Confidence 6667788899997766554443321 346678888877654
No 256
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.43 E-value=0.0068 Score=67.77 Aligned_cols=110 Identities=11% Similarity=0.120 Sum_probs=66.3
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHhccccceE-EeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhc
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQISRKFESKC-FMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQ 194 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~-~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 194 (1094)
.+|+|.|+.|.||||+++.+...+.......+ .+.+..+.... .. ...+...............++..|.
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~-~~--------~~~v~q~~~~~~~~~~~~~La~aL~ 194 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHE-SK--------KCLVNQREVHRDTLGFSEALRSALR 194 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCC-CS--------SSEEEEEEBTTTBSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhh-cc--------ccceeeeeeccccCCHHHHHHHHhh
Confidence 49999999999999999999987654433333 22221111000 00 0000000001111122668889999
Q ss_pred CCeEEEEEecCCChHhHHHHhcCCCCCCCCceEEEEeCChhhh
Q 001348 195 CMKVFIVLDDVNKFRQLEYLAGGLDRFGLGSRIIVTSRDKQVL 237 (1094)
Q Consensus 195 ~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~ 237 (1094)
...=+|++|.+.+.+.++.+.... ..|..||+||-+...+
T Consensus 195 ~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 195 EDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp SCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred hCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 999999999999887766654431 3466789999876554
No 257
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.40 E-value=0.11 Score=59.66 Aligned_cols=50 Identities=20% Similarity=0.220 Sum_probs=34.7
Q ss_pred HHHHHHhccccC-------CCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEe
Q 001348 100 RIERIKSLLCIG-------LPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFM 149 (1094)
Q Consensus 100 ~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 149 (1094)
-.+++.+++... ....++|.|+|.+|+||||+|..++..++.+....+.+
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVll 134 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLV 134 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEE
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEE
Confidence 345555555432 13478999999999999999999998776652333333
No 258
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.25 E-value=0.024 Score=71.57 Aligned_cols=49 Identities=22% Similarity=0.289 Sum_probs=38.0
Q ss_pred CeeehhHHHHHHHhccccC------C-CCeEEEEEEecCCCchhhHHHHHHHHHhc
Q 001348 93 GLIGLDARIERIKSLLCIG------L-PNIQIMGIWGMGGIGKTTIAGVLFNQISR 141 (1094)
Q Consensus 93 ~~vGr~~~~~~l~~~L~~~------~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 141 (1094)
.++|.+..++.+...+... . .....+.|+|++|+|||++|+++++....
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4799999888887776431 1 12358899999999999999999997643
No 259
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.24 E-value=0.039 Score=60.11 Aligned_cols=35 Identities=31% Similarity=0.457 Sum_probs=27.5
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHhccccceEEe
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFM 149 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 149 (1094)
...+++|+|+.|+||||+++.++..++.. ...+.+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~g~V~l 133 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLM 133 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEE
Confidence 45799999999999999999999866543 344444
No 260
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.22 E-value=0.034 Score=64.05 Aligned_cols=36 Identities=28% Similarity=0.439 Sum_probs=28.5
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHhccccceEEee
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMA 150 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 150 (1094)
...+|+|+|..|+|||||++.++..++.. .+.+++.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~ 327 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLA 327 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEe
Confidence 45799999999999999999999876543 3455553
No 261
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.22 E-value=0.033 Score=55.89 Aligned_cols=115 Identities=16% Similarity=0.068 Sum_probs=57.9
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHHHHHhhh--ccCCcccC---------CC
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDRLLSQIL--DESIRIET---------PY 184 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~--~~~~~~~~---------~~ 184 (1094)
..|.|++-.|-||||.|-..+-+...+=-.+.++.-.... .. .+-..+.+.+--++. +....... ..
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~-~~-~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGT-WP-NGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCS-SC-CHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCC-CC-ccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 4667777778999999999998765553334444322210 00 122233332210000 00000000 00
Q ss_pred -chHHHHHHhcCCeE-EEEEecCCC--------hHhHHHHhcCCCCCCCCceEEEEeCChh
Q 001348 185 -IPHYIRERLQCMKV-FIVLDDVNK--------FRQLEYLAGGLDRFGLGSRIIVTSRDKQ 235 (1094)
Q Consensus 185 -~~~~l~~~L~~kr~-LlVLDdv~~--------~~~~~~l~~~~~~~~~gsrIiiTTR~~~ 235 (1094)
....+++.+.+.+| |||||++.. .+.+-.+... -.....||+|+|...
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~---Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA---RPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT---SCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh---CcCCCEEEEECCCCc
Confidence 13445556655555 999999822 2333333322 234668999999863
No 262
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.20 E-value=0.019 Score=59.08 Aligned_cols=40 Identities=25% Similarity=0.322 Sum_probs=29.2
Q ss_pred HHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHh
Q 001348 101 IERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 101 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
+++|.+.+........+|+|.|+.|.|||||++.+...+.
T Consensus 8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3344444332234567999999999999999999998665
No 263
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.16 E-value=0.065 Score=61.17 Aligned_cols=29 Identities=28% Similarity=0.385 Sum_probs=25.5
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
...+|.++|.+|+||||++..++..++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 47899999999999999999999876654
No 264
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.11 E-value=0.067 Score=58.92 Aligned_cols=28 Identities=29% Similarity=0.342 Sum_probs=24.7
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHhc
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQISR 141 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 141 (1094)
...+|+|+|+.|+||||+++.++..++.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4689999999999999999999986554
No 265
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.92 E-value=0.017 Score=58.38 Aligned_cols=84 Identities=18% Similarity=0.267 Sum_probs=41.9
Q ss_pred ccccccceeecccc-cccc----cchhhhhcCCcccEEeccCCcccCc----cchhhcccCccceeeccCcccc-----c
Q 001348 588 DCLAKLEYLDLGHC-TILE----SISTSICKLKSLLKLCLDNCSKLES----FPEILEKMGCLEDIDLEGTAIT-----E 653 (1094)
Q Consensus 588 ~~L~~L~~L~L~~~-~~~~----~lp~~i~~l~~L~~L~L~~~~~~~~----~p~~l~~l~~L~~L~L~~~~i~-----~ 653 (1094)
.+-+.|+.|+|++| .+.. .+-..+..-+.|+.|+|++|.+... +.+.+...+.|++|+|++|.|. .
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 33456777777664 3321 1223344445666666666655422 3334444555666666666555 2
Q ss_pred ccchhhccCCCcEEecCC
Q 001348 654 LPSSIEYLGGLTTLNLTG 671 (1094)
Q Consensus 654 lp~~l~~l~~L~~L~L~~ 671 (1094)
+-..+..-+.|+.|+|++
T Consensus 118 la~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHTTTTCCCSEEECCC
T ss_pred HHHHHhhCCceeEEECCC
Confidence 222333334455555543
No 266
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.89 E-value=0.032 Score=63.98 Aligned_cols=29 Identities=31% Similarity=0.452 Sum_probs=25.0
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
..++|+|+|.+|+||||+|..++...+.+
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~ 126 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKR 126 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35799999999999999999999876544
No 267
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.81 E-value=0.014 Score=64.50 Aligned_cols=28 Identities=21% Similarity=0.049 Sum_probs=23.9
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHhccc
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQISRKF 143 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F 143 (1094)
..++|+|.+|.|||||++.+.+.+....
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i~~~~ 202 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSIAYNH 202 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHHHHHC
T ss_pred cEEEEecCCCCChhHHHHHHHHHHhhcC
Confidence 5889999999999999999998765433
No 268
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.77 E-value=0.021 Score=58.81 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=24.5
Q ss_pred CCeEEEEEEecCCCchhhHHHHHHHHH
Q 001348 113 PNIQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 113 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
.+.++|.|.|++|.||||.|+.++.++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 568999999999999999999999864
No 269
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.76 E-value=0.012 Score=58.56 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=22.4
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHh
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
++|.|.|++|.||||+|+++..++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999998754
No 270
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.74 E-value=0.039 Score=56.27 Aligned_cols=44 Identities=27% Similarity=0.357 Sum_probs=31.6
Q ss_pred hhHHHHHHHhcccc-CCCCeEEEEEEecCCCchhhHHHHHHHHHh
Q 001348 97 LDARIERIKSLLCI-GLPNIQIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 97 r~~~~~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
|+..+++|.+.+.. ......+|+|.|..|.||||+|+.+...+.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34455555554432 223467999999999999999999998654
No 271
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.73 E-value=0.071 Score=59.38 Aligned_cols=35 Identities=31% Similarity=0.457 Sum_probs=27.6
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHhccccceEEe
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFM 149 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 149 (1094)
...+|+|+|+.|+||||+++.++..++.. ...+.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~G~V~l 190 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLM 190 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcccc-CCEEEE
Confidence 45799999999999999999999876543 344444
No 272
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.71 E-value=0.02 Score=58.64 Aligned_cols=88 Identities=23% Similarity=0.261 Sum_probs=46.4
Q ss_pred EEEEEecCCCchhhHHHHHHHHHhccccceEEeee---chhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHh
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMAN---VREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERL 193 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~---~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 193 (1094)
+|.|.|++|+||||.|+.++.++. ..+++. +|+.......+... +.+......-..+.-....+++++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g-----~~~istGdllR~~i~~~t~lg~~----~~~~~~~G~lvpd~iv~~lv~~~l 72 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG-----FVHISTGDILREAVQKGTPLGKK----AKEYMERGELVPDDLIIALIEEVF 72 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-----CEEEEHHHHHHHHHHHTCHHHHH----HHHHHHHTCCCCHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC-----CeEEcHHHHHHHHHHhcChhhhh----HHHHHhcCCcCCHHHHHHHHHHhh
Confidence 577899999999999999997641 233331 11111110111111 112222221111111266778888
Q ss_pred cCCeEEEEEecC-CChHhHHHH
Q 001348 194 QCMKVFIVLDDV-NKFRQLEYL 214 (1094)
Q Consensus 194 ~~kr~LlVLDdv-~~~~~~~~l 214 (1094)
....- +|||+. .+..|.+.|
T Consensus 73 ~~~~~-~ilDGfPRt~~Qa~~l 93 (206)
T 3sr0_A 73 PKHGN-VIFDGFPRTVKQAEAL 93 (206)
T ss_dssp CSSSC-EEEESCCCSHHHHHHH
T ss_pred ccCCc-eEecCCchhHHHHHHH
Confidence 66554 689998 445665554
No 273
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.69 E-value=0.018 Score=64.99 Aligned_cols=47 Identities=19% Similarity=0.145 Sum_probs=34.6
Q ss_pred eeehhHHHHHHHhccc-------------cCCCCeEEEEEEecCCCchhhHHHHHHHHHh
Q 001348 94 LIGLDARIERIKSLLC-------------IGLPNIQIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 94 ~vGr~~~~~~l~~~L~-------------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
++|.+..++.+...+. ......+.|.++|++|+|||++|+++++...
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5777777777766652 1111345788999999999999999998763
No 274
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.66 E-value=0.076 Score=56.13 Aligned_cols=37 Identities=16% Similarity=0.172 Sum_probs=27.4
Q ss_pred HHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHH
Q 001348 102 ERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQ 138 (1094)
Q Consensus 102 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 138 (1094)
.-+..++....+....|.++|++|.|||++|.++++.
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 3355555433233457999999999999999999985
No 275
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.64 E-value=0.09 Score=59.97 Aligned_cols=29 Identities=34% Similarity=0.358 Sum_probs=25.5
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
..++|+++|.+|+||||++..++..++.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999876654
No 276
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.59 E-value=0.07 Score=61.08 Aligned_cols=54 Identities=22% Similarity=0.445 Sum_probs=34.9
Q ss_pred eehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechh
Q 001348 95 IGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVRE 154 (1094)
Q Consensus 95 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~ 154 (1094)
.|.. -++.+..+.. + ..++|+|.+|+||||||+.+......++...+-+..+++
T Consensus 137 TGir-~ID~L~pi~k---G--q~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~~iGe 190 (473)
T 1sky_E 137 TGIK-VVDLLAPYIK---G--GKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGE 190 (473)
T ss_dssp CSCH-HHHHHSCEET---T--CEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEEEESS
T ss_pred ccch-HHHHHhhhcc---C--CEEEEECCCCCCccHHHHHHHhhhhhccCcEEEEeeecc
Confidence 4543 3555555442 1 258899999999999999999876655544433333433
No 277
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.54 E-value=0.023 Score=62.57 Aligned_cols=49 Identities=24% Similarity=0.214 Sum_probs=33.9
Q ss_pred eehhHHHHHHHhcccc--CCCCeEEEEEEecCCCchhhHHHHHHHHHhccc
Q 001348 95 IGLDARIERIKSLLCI--GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKF 143 (1094)
Q Consensus 95 vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 143 (1094)
|+.+.-.+++.+.+.. ..+....|+|+|++|.||||+|+.++..+...|
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 3344444444444422 234567799999999999999999999776555
No 278
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.54 E-value=0.049 Score=56.36 Aligned_cols=26 Identities=15% Similarity=0.218 Sum_probs=23.2
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHh
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
-.+++|+|+.|+|||||++.+.....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 46899999999999999999998654
No 279
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.46 E-value=0.05 Score=66.93 Aligned_cols=151 Identities=15% Similarity=0.236 Sum_probs=79.4
Q ss_pred CCCeeehhHHHHHHHhccccC-----------CCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccC
Q 001348 91 FEGLIGLDARIERIKSLLCIG-----------LPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKG 159 (1094)
Q Consensus 91 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 159 (1094)
-+++.|.+...++|.+.+... ....+-|.++|++|.|||.+|+++++.....| +.....+
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f----~~v~~~~----- 546 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF----ISIKGPE----- 546 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEE----EECCHHH-----
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCce----EEeccch-----
Confidence 356789999999888876421 12345688999999999999999998754332 2111111
Q ss_pred CChHHHHHHHHHhhhccCCcccCCCchHHHHHHh-cCCeEEEEEecCCChH----------------hHHHHhcCCCCCC
Q 001348 160 GGLVHLRDRLLSQILDESIRIETPYIPHYIRERL-QCMKVFIVLDDVNKFR----------------QLEYLAGGLDRFG 222 (1094)
Q Consensus 160 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~~ 222 (1094)
++....++ .+...+.+.+.- +..+.+|++|+++..- .+..|+...+...
T Consensus 547 ---------l~s~~vGe-----se~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~ 612 (806)
T 3cf2_A 547 ---------LLTMWFGE-----SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 612 (806)
T ss_dssp ---------HHTTTCSS-----CHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC
T ss_pred ---------hhccccch-----HHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC
Confidence 11111111 000122222222 3467999999985321 1333443333222
Q ss_pred CCc-eEEE-EeCChhh-----hhhcCcCeEEEccCCCHHHHHHHHHhhc
Q 001348 223 LGS-RIIV-TSRDKQV-----LEKYGVDHIYEVEELNNIEALELFCKYA 264 (1094)
Q Consensus 223 ~gs-rIii-TTR~~~v-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 264 (1094)
... .++| ||-.... +..-..+..+.++..+.++..++|..+.
T Consensus 613 ~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 613 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp SSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred CCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 222 2333 4443322 2111356788898888888888887776
No 280
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.42 E-value=0.019 Score=58.51 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=22.8
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
.++|+|.|++|+||||+|+.++..+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4589999999999999999999876
No 281
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.40 E-value=0.021 Score=56.34 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=22.2
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHh
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
.+|+|.|+.|+||||+|+.+..++.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999988754
No 282
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.38 E-value=0.037 Score=59.94 Aligned_cols=30 Identities=17% Similarity=0.143 Sum_probs=25.8
Q ss_pred CCCeEEEEEEecCCCchhhHHHHHHHHHhc
Q 001348 112 LPNIQIMGIWGMGGIGKTTIAGVLFNQISR 141 (1094)
Q Consensus 112 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 141 (1094)
.....+|+|.|..|.||||||+.+...+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 346789999999999999999999886654
No 283
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.27 E-value=0.021 Score=57.32 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=22.4
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
.+.|.|.|+.|+||||+|+.++.++
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578899999999999999999876
No 284
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.23 E-value=0.018 Score=64.01 Aligned_cols=48 Identities=21% Similarity=0.282 Sum_probs=39.1
Q ss_pred CCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 91 FEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 91 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
.+.++|++..++.+...+..+ .-|.++|++|+|||+||+++++.....
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~~~~ 73 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTMDLD 73 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHTTCC
T ss_pred ccceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 356899999998888877543 367899999999999999999876544
No 285
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.16 E-value=0.024 Score=63.96 Aligned_cols=110 Identities=15% Similarity=0.138 Sum_probs=62.4
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHhccccceEEe-eechhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHH
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFM-ANVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRER 192 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~-~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 192 (1094)
.-.+|+|+|+.|.||||+++.+...+.......+.+ .+..+.... .. ..-+...............++..
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~-~~--------~~~v~Q~~~g~~~~~~~~~l~~~ 205 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFK-HK--------KSIVNQREVGEDTKSFADALRAA 205 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCC-CS--------SSEEEEEEBTTTBSCSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhc-cC--------ceEEEeeecCCCHHHHHHHHHHH
Confidence 346899999999999999999998665443344433 211110000 00 00000000000111226678888
Q ss_pred hcCCeEEEEEecCCChHhHHHHhcCCCCCCCCceEEEEeCChh
Q 001348 193 LQCMKVFIVLDDVNKFRQLEYLAGGLDRFGLGSRIIVTSRDKQ 235 (1094)
Q Consensus 193 L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~ 235 (1094)
|....=+|++|.+.+.+.+...+... ..|..|+.|+-+..
T Consensus 206 L~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 206 LREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNT 245 (372)
T ss_dssp TTSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCS
T ss_pred hhhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcch
Confidence 87777789999998777655443321 34666777776544
No 286
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.02 E-value=0.047 Score=55.57 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=24.3
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHh
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
...+|+|.|+.|.||||+|+.++..+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999998775
No 287
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.02 E-value=0.038 Score=57.14 Aligned_cols=35 Identities=17% Similarity=-0.165 Sum_probs=27.6
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhccccceEEe
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFM 149 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 149 (1094)
-.++.|+|..|.||||+|..++++...+-..+.++
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 46889999999999999999998876554444444
No 288
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.98 E-value=0.026 Score=56.77 Aligned_cols=25 Identities=24% Similarity=0.026 Sum_probs=20.9
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHh
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
+++.|+|+.|.||||+|..++.+..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4788999999999999977776553
No 289
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.97 E-value=0.047 Score=54.93 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=23.4
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHhc
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQISR 141 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 141 (1094)
++|.|.|++|+||||+|+.+..++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999998764
No 290
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.92 E-value=0.12 Score=56.06 Aligned_cols=28 Identities=25% Similarity=0.259 Sum_probs=24.4
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHhc
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQISR 141 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 141 (1094)
..++|+|+|.+|+||||++..++..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3569999999999999999999987653
No 291
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.86 E-value=0.025 Score=56.61 Aligned_cols=25 Identities=20% Similarity=0.464 Sum_probs=22.5
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHh
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
++++|+|+.|+|||||++.+.....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999988654
No 292
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.86 E-value=0.031 Score=56.38 Aligned_cols=24 Identities=42% Similarity=0.418 Sum_probs=21.6
Q ss_pred eEEEEEEecCCCchhhHHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQ 138 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~ 138 (1094)
-.+|+|.|++|.|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999864
No 293
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.78 E-value=0.033 Score=55.43 Aligned_cols=22 Identities=32% Similarity=0.369 Sum_probs=20.6
Q ss_pred EEEEEEecCCCchhhHHHHHHH
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFN 137 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~ 137 (1094)
.+|.|.|++|.||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 294
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.72 E-value=0.022 Score=57.14 Aligned_cols=28 Identities=32% Similarity=0.488 Sum_probs=23.4
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHhccc
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQISRKF 143 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F 143 (1094)
|.|+|.|++|+|||||++++..+....|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 4588999999999999999988765544
No 295
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.69 E-value=0.047 Score=55.01 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=23.1
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHH
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
...+|.|.|++|.||||+|+.+..++
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999998866
No 296
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.61 E-value=0.029 Score=55.47 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=22.2
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHh
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
.+|+|.|+.|.||||+|+.++....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999988653
No 297
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.60 E-value=0.029 Score=62.77 Aligned_cols=51 Identities=18% Similarity=0.176 Sum_probs=36.5
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHh
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
+...+.++|.+..++.+...+... ...-|.|+|.+|+|||++|+++++...
T Consensus 20 ~~~f~~i~G~~~~~~~l~~~~~~~--~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 20 VFPFSAIVGQEDMKLALLLTAVDP--GIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHCG--GGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCCchhccChHHHHHHHHHHhhCC--CCceEEEECCCCccHHHHHHHHHHhCc
Confidence 455677999988666544333211 122388999999999999999998754
No 298
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.53 E-value=0.028 Score=56.08 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=22.4
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
.++|.|.|++|.||||+|+.+..++
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999865
No 299
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.51 E-value=0.063 Score=53.84 Aligned_cols=28 Identities=32% Similarity=0.395 Sum_probs=24.5
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHhc
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQISR 141 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 141 (1094)
...+|+|.|++|.||||+|+.++..+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3578999999999999999999987654
No 300
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.44 E-value=0.048 Score=57.48 Aligned_cols=27 Identities=22% Similarity=-0.006 Sum_probs=23.6
Q ss_pred CCeEEEEEEecCCCchhhHHHHHHHHH
Q 001348 113 PNIQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 113 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
.....|+|.|++|+||||+|+.+.+++
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998765
No 301
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.44 E-value=0.057 Score=54.33 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=20.4
Q ss_pred EEEEEEecCCCchhhHHHHHHH
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFN 137 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~ 137 (1094)
.+++|.|+.|.|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999975
No 302
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.43 E-value=0.039 Score=56.19 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=21.9
Q ss_pred EEEEEecCCCchhhHHHHHHHHHh
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
.|+|.|+.|+||||+|+.+...+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998764
No 303
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.43 E-value=0.056 Score=53.15 Aligned_cols=29 Identities=21% Similarity=0.278 Sum_probs=25.1
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
..++++|.|..|.|||||+.++...++.+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 35789999999999999999999987654
No 304
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.42 E-value=0.043 Score=54.00 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=22.7
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHh
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
..+|+|.|+.|.||||+|+.+..++.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998754
No 305
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.39 E-value=0.036 Score=55.73 Aligned_cols=29 Identities=31% Similarity=0.462 Sum_probs=24.5
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHhcccc
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQISRKFE 144 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 144 (1094)
++++|.|+.|.|||||++.+.......|.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~~ 30 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccce
Confidence 47899999999999999999987654443
No 306
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.37 E-value=0.04 Score=62.33 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=22.7
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHh
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
...|.++|++|+|||++|+++++...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 34688999999999999999998764
No 307
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.37 E-value=0.043 Score=58.22 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=22.3
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHh
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
++|.|.|++|.||||||++++.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 5789999999999999999998653
No 308
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.33 E-value=0.059 Score=54.87 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=23.2
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHH
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
...+|+|.|+.|.||||+|+.++..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 34689999999999999999999866
No 309
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.29 E-value=0.049 Score=53.97 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=22.5
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
..+|+|.|+.|.||||+|+.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998764
No 310
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.28 E-value=0.043 Score=54.50 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.6
Q ss_pred EEEEEecCCCchhhHHHHHHHHHh
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
.|.|.|++|.||||+|+.++.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998754
No 311
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.25 E-value=0.047 Score=54.87 Aligned_cols=26 Identities=19% Similarity=0.503 Sum_probs=23.2
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHhc
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQISR 141 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 141 (1094)
.+|+|.|++|+||||+|+.+..++..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999987653
No 312
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.13 E-value=0.046 Score=55.23 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=22.5
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
..+|+|.|++|.||||+|+.+...+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998865
No 313
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.11 E-value=0.042 Score=55.97 Aligned_cols=25 Identities=16% Similarity=0.336 Sum_probs=22.5
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
.++|+|.|+.|.||||+|+.+...+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999876
No 314
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.04 E-value=0.055 Score=54.52 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=22.3
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
..+|+|.|++|.||||+|+.+...+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998765
No 315
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.03 E-value=0.11 Score=48.71 Aligned_cols=52 Identities=12% Similarity=0.008 Sum_probs=21.5
Q ss_pred EEEeccCCCC--ccccccccccccceeecccccccccchhhhhcCCcccEEeccCC
Q 001348 572 ELYLRGTPIE--YVPSSIDCLAKLEYLDLGHCTILESISTSICKLKSLLKLCLDNC 625 (1094)
Q Consensus 572 ~L~L~~~~l~--~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~ 625 (1094)
.++.++++++ .+|..+. .+|++|+|++|.+...-+..|..+++|++|+|++|
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 3444444444 4443321 23444444444443332333344444444444444
No 316
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.94 E-value=0.062 Score=54.71 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=23.7
Q ss_pred CCeEEEEEEecCCCchhhHHHHHHHHH
Q 001348 113 PNIQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 113 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
....+|+|.|+.|.||||+|+.+..+.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356799999999999999999998764
No 317
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.92 E-value=0.04 Score=55.17 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=21.6
Q ss_pred EEEEEecCCCchhhHHHHHHHHHh
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
+|+|.|++|.||||+|+.+..++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998653
No 318
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=92.91 E-value=0.82 Score=50.62 Aligned_cols=154 Identities=10% Similarity=-0.058 Sum_probs=94.3
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHh-ccccceEEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHh
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQIS-RKFESKCFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERL 193 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 193 (1094)
.++..++|..|.||++.|+++...+. ..|+....+ .... . .++.++...+- ...+
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~---~-~~~~~l~~~~~-------------------~~pl 73 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTF-SIDP---N-TDWNAIFSLCQ-------------------AMSL 73 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEE-ECCT---T-CCHHHHHHHHH-------------------HHHH
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEE-EecC---C-CCHHHHHHHhc-------------------CcCC
Confidence 46888999999999999999998754 334322111 1111 1 33333333221 1123
Q ss_pred cCCeEEEEEecCCC---hHhHHHHhcCCCCCCCCceEEEEeCC-------hhhhhhc-CcCeEEEccCCCHHHHHHHHHh
Q 001348 194 QCMKVFIVLDDVNK---FRQLEYLAGGLDRFGLGSRIIVTSRD-------KQVLEKY-GVDHIYEVEELNNIEALELFCK 262 (1094)
Q Consensus 194 ~~kr~LlVLDdv~~---~~~~~~l~~~~~~~~~gsrIiiTTR~-------~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~ 262 (1094)
-+++-++|+|+++. .+..+.|...+....+++.+|++|.+ +.+.... .....++...++.++..+.+..
T Consensus 74 f~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~ 153 (343)
T 1jr3_D 74 FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAA 153 (343)
T ss_dssp CCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHH
Confidence 45667788899865 34556666555444567777777643 2344432 3457899999999999888877
Q ss_pred hcccCCCCCchHHHHHHHHHHHhCCCchHHHH
Q 001348 263 YAFRQNHHPQDLMVISGRVVDYARGNPLAIKV 294 (1094)
Q Consensus 263 ~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 294 (1094)
.+-.... .--.+.+..+++.++|...++..
T Consensus 154 ~~~~~g~--~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 154 RAKQLNL--ELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHHTTC--EECHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHcCC--CCCHHHHHHHHHHhchHHHHHHH
Confidence 6632221 11234567788888888776654
No 319
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.88 E-value=0.062 Score=54.63 Aligned_cols=26 Identities=38% Similarity=0.450 Sum_probs=23.1
Q ss_pred CCeEEEEEEecCCCchhhHHHHHHHH
Q 001348 113 PNIQIMGIWGMGGIGKTTIAGVLFNQ 138 (1094)
Q Consensus 113 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 138 (1094)
+...+|+|.|+.|.||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45679999999999999999999874
No 320
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.85 E-value=0.061 Score=53.82 Aligned_cols=25 Identities=32% Similarity=0.271 Sum_probs=22.3
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
...|+|.|++|.||||+|+.+..+.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998765
No 321
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.79 E-value=0.042 Score=56.36 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=23.5
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHh
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
..++|+|.|+.|+|||||++.+.....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 346899999999999999999998654
No 322
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.78 E-value=0.07 Score=54.58 Aligned_cols=26 Identities=38% Similarity=0.483 Sum_probs=22.8
Q ss_pred CCeEEEEEEecCCCchhhHHHHHHHH
Q 001348 113 PNIQIMGIWGMGGIGKTTIAGVLFNQ 138 (1094)
Q Consensus 113 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 138 (1094)
....+|+|.|+.|.||||+|+.+...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34679999999999999999998864
No 323
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.77 E-value=0.056 Score=54.22 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=22.2
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHH
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQ 138 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~ 138 (1094)
....|+|.|+.|.||||+|+.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999876
No 324
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.76 E-value=0.045 Score=54.05 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=22.1
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHh
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
++|+|.|+.|.||||+|+.+..++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999998653
No 325
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.75 E-value=0.048 Score=55.13 Aligned_cols=27 Identities=22% Similarity=0.460 Sum_probs=23.6
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHh
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
..++|+|+|+.|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 357899999999999999999997654
No 326
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.75 E-value=0.087 Score=53.87 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=24.0
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
.+|+|.|++|.||||+|+.+..++...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 589999999999999999999877543
No 327
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.72 E-value=0.084 Score=54.17 Aligned_cols=28 Identities=18% Similarity=0.232 Sum_probs=24.5
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
..+|+|.|+.|.||||+|+.+..++...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4589999999999999999999987544
No 328
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.69 E-value=0.064 Score=52.65 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=21.6
Q ss_pred EEEEEecCCCchhhHHHHHHHHHh
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
.|+|.|+.|.||||+|+.+..++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998653
No 329
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.65 E-value=0.071 Score=53.59 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=22.7
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
.++|+|.|+.|.||||+|+.+..++
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998865
No 330
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.64 E-value=0.065 Score=54.23 Aligned_cols=25 Identities=32% Similarity=0.332 Sum_probs=22.6
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHh
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
.+|+|.|++|.||||+|+.+..++.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999998763
No 331
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.64 E-value=0.047 Score=54.53 Aligned_cols=26 Identities=35% Similarity=0.405 Sum_probs=18.5
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHh
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
..+|.|.|++|.||||+|+.+..++.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35799999999999999999987653
No 332
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.63 E-value=0.07 Score=53.81 Aligned_cols=43 Identities=19% Similarity=0.170 Sum_probs=31.2
Q ss_pred hHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhc
Q 001348 98 DARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISR 141 (1094)
Q Consensus 98 ~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 141 (1094)
..-+..+..++.. -+..+.+.|+|++|.||||+|.++++.+.+
T Consensus 42 ~~f~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 42 ITFLGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3445556666542 233346899999999999999999998754
No 333
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.63 E-value=0.076 Score=54.44 Aligned_cols=27 Identities=33% Similarity=0.411 Sum_probs=23.8
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHh
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
...+|+|.|+.|.|||||++.+...+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457999999999999999999988654
No 334
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.62 E-value=0.064 Score=56.86 Aligned_cols=28 Identities=14% Similarity=0.322 Sum_probs=24.0
Q ss_pred CCeEEEEEEecCCCchhhHHHHHHHHHh
Q 001348 113 PNIQIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 113 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
....+|+|.|+.|.||||+|+.+...+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3567999999999999999999988654
No 335
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.59 E-value=0.061 Score=54.82 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=20.0
Q ss_pred EEEEEecCCCchhhHHHHHHH
Q 001348 117 IMGIWGMGGIGKTTIAGVLFN 137 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~ 137 (1094)
+|+|.|+.|+||||+|+.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999987
No 336
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.55 E-value=0.06 Score=54.87 Aligned_cols=24 Identities=25% Similarity=0.402 Sum_probs=21.8
Q ss_pred EEEEEEecCCCchhhHHHHHHHHH
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
.+++|.|+.|.|||||++.+....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 589999999999999999998754
No 337
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.55 E-value=0.048 Score=55.74 Aligned_cols=27 Identities=22% Similarity=0.440 Sum_probs=23.4
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHh
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
..++|+|.|++|+||||+++.+.....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 346899999999999999999988663
No 338
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=92.53 E-value=0.051 Score=63.50 Aligned_cols=44 Identities=25% Similarity=0.171 Sum_probs=36.5
Q ss_pred CCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHH
Q 001348 92 EGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 92 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
..++|.+..++.+...+..+ .-|.|+|++|+|||+||+++++..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHHH
Confidence 35899999998888777533 367899999999999999999865
No 339
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.51 E-value=0.052 Score=53.74 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=19.3
Q ss_pred eEEEEEEecCCCchhhHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLF 136 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~ 136 (1094)
-.+++|+|+.|.|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4689999999999999999643
No 340
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.51 E-value=0.066 Score=55.58 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=21.7
Q ss_pred EEEEEEecCCCchhhHHHHHHHHH
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
.+|+|.|+.|.||||+|+.+...+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998754
No 341
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=92.43 E-value=0.26 Score=56.26 Aligned_cols=52 Identities=23% Similarity=0.374 Sum_probs=34.6
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHhcc-ccceEEeeechhhhccCCChHHHHHHHHH
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQISRK-FESKCFMANVREESEKGGGLVHLRDRLLS 171 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 171 (1094)
..++|.|.+|+|||+|+..+.+.+... -+.++|. -+.+.. ..+.++.+.+..
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~-~iGER~---rEv~e~~~~~~~ 206 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA-GVGERT---REGNDLYHEMIE 206 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEE-EESCCH---HHHHHHHHHHHH
T ss_pred CeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEE-ECCCcc---hHHHHHHHHhhh
Confidence 478999999999999999999976443 3445554 344432 224455555543
No 342
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.42 E-value=0.2 Score=51.69 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=21.0
Q ss_pred EEEEEecCCCchhhHHHHHHHHH
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
.+||.|++|.||||+|+.+..++
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999998865
No 343
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.38 E-value=0.073 Score=54.14 Aligned_cols=25 Identities=28% Similarity=0.211 Sum_probs=22.5
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
..+|+|.|++|.||||+|+.+...+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998865
No 344
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.38 E-value=0.13 Score=56.77 Aligned_cols=105 Identities=15% Similarity=0.108 Sum_probs=59.8
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHhcC
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERLQC 195 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~ 195 (1094)
.+++|+|..|.|||||++.+...+.. -.+.+.+....+.... .. .+. . .+.. + ........+.+.|..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~~~--~~---~~~-i-~~~~---g-gg~~~r~~la~aL~~ 239 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVFK--HH---KNY-T-QLFF---G-GNITSADCLKSCLRM 239 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCCCS--SC---SSE-E-EEEC---B-TTBCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeeccccc--cc---hhE-E-EEEe---C-CChhHHHHHHHHhhh
Confidence 48999999999999999999875533 2456666543221100 00 000 0 0000 0 111225677888888
Q ss_pred CeEEEEEecCCChHhHHHHhcCCCCCCCCceEEEEeCChh
Q 001348 196 MKVFIVLDDVNKFRQLEYLAGGLDRFGLGSRIIVTSRDKQ 235 (1094)
Q Consensus 196 kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~ 235 (1094)
+.=+|++|.+.+.+.++.+... .. + +..+|+||....
T Consensus 240 ~p~ilildE~~~~e~~~~l~~~-~~-g-~~tvi~t~H~~~ 276 (330)
T 2pt7_A 240 RPDRIILGELRSSEAYDFYNVL-CS-G-HKGTLTTLHAGS 276 (330)
T ss_dssp CCSEEEECCCCSTHHHHHHHHH-HT-T-CCCEEEEEECSS
T ss_pred CCCEEEEcCCChHHHHHHHHHH-hc-C-CCEEEEEEcccH
Confidence 8889999999876655544332 11 1 223666665544
No 345
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.36 E-value=0.063 Score=55.54 Aligned_cols=26 Identities=31% Similarity=0.217 Sum_probs=22.7
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHh
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
...|+|.|++|.||||+|+.++.++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35789999999999999999998653
No 346
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.36 E-value=0.11 Score=56.76 Aligned_cols=30 Identities=30% Similarity=0.533 Sum_probs=25.6
Q ss_pred CCeEEEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 113 PNIQIMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 113 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
++.|||+|.|-||+||||.|..++--+...
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~ 75 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSIL 75 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHC
Confidence 467999999999999999999998876554
No 347
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.35 E-value=0.082 Score=60.39 Aligned_cols=50 Identities=22% Similarity=0.157 Sum_probs=35.0
Q ss_pred CeeehhHHHHHHHhcccc------------CCCCeEEEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 93 GLIGLDARIERIKSLLCI------------GLPNIQIMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 93 ~~vGr~~~~~~l~~~L~~------------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
+++|.+...+.+...+.. .....+-|.++|++|+||||+|++++..+...
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~ 77 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 467777766666554411 01124568899999999999999999876443
No 348
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.28 E-value=0.24 Score=54.83 Aligned_cols=39 Identities=26% Similarity=0.164 Sum_probs=27.8
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHhccc-cceEEeeechh
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQISRKF-ESKCFMANVRE 154 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~ 154 (1094)
..++|+|.+|+|||+|++.+.+.+.... +..|.+..+++
T Consensus 176 QR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~lIGE 215 (427)
T 3l0o_A 176 QRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDE 215 (427)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEEECSC
T ss_pred ceEEEecCCCCChhHHHHHHHHHHhhcCCCeEEEEEEecc
Confidence 4779999999999999999999765433 33333334443
No 349
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.25 E-value=0.077 Score=56.52 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=23.2
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHh
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
..+|.|.|++|.||||+|+.+...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 350
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.20 E-value=0.075 Score=56.08 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=22.7
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
..+|+|.|+.|.|||||++.++.++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999765
No 351
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.19 E-value=0.07 Score=54.39 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=22.2
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
..+|+|.|+.|.||||+|+.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3589999999999999999998755
No 352
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.12 E-value=0.097 Score=57.31 Aligned_cols=46 Identities=22% Similarity=0.197 Sum_probs=32.2
Q ss_pred eehhHHHHHHHhccccC--CCCeEEEEEEecCCCchhhHHHHHHHHHh
Q 001348 95 IGLDARIERIKSLLCIG--LPNIQIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 95 vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
+|-...+..+...+... ...+.+|||.|..|.||||+|+.+...+.
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34444455444433322 34578999999999999999999887654
No 353
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.12 E-value=0.074 Score=54.31 Aligned_cols=22 Identities=45% Similarity=0.585 Sum_probs=20.2
Q ss_pred EEEEEEecCCCchhhHHHHHHH
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFN 137 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~ 137 (1094)
.+|+|.|+.|.||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 354
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.10 E-value=0.18 Score=56.37 Aligned_cols=41 Identities=24% Similarity=0.295 Sum_probs=30.1
Q ss_pred HHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 102 ERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 102 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
.++...+........+|+|+|.+|+|||||+.++...+...
T Consensus 66 ~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~ 106 (355)
T 3p32_A 66 QQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIER 106 (355)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 33343343334567899999999999999999998866443
No 355
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.08 E-value=0.082 Score=53.22 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=22.0
Q ss_pred EEEEEecCCCchhhHHHHHHHHHh
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
+|+|.|+.|.||||+|+.+.+++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 356
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.01 E-value=0.089 Score=53.85 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=24.3
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
..+|+|.|+.|.||||+|+.+..++...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999876543
No 357
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.93 E-value=0.065 Score=56.59 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=22.5
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHh
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
.+|+|.|+.|.||||+++.++..+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999998764
No 358
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=91.92 E-value=0.27 Score=54.60 Aligned_cols=49 Identities=24% Similarity=0.243 Sum_probs=34.3
Q ss_pred HHHHhccc-cCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEee
Q 001348 102 ERIKSLLC-IGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMA 150 (1094)
Q Consensus 102 ~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 150 (1094)
.+|-..|. .+-..-+++.|+|++|+||||||..++......=..++|+.
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 44555554 22234579999999999999999999987654333456664
No 359
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.90 E-value=0.087 Score=53.19 Aligned_cols=25 Identities=32% Similarity=0.563 Sum_probs=22.6
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHH
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQ 138 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~ 138 (1094)
...+|+|.|+.|.||||+|+.+...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999999999999999875
No 360
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=91.87 E-value=0.12 Score=56.65 Aligned_cols=51 Identities=20% Similarity=0.077 Sum_probs=35.7
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHHHHHh
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDRLLSQ 172 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 172 (1094)
-.++.|.|.+|+||||+|..++.....+-..++|++- + ....++...+++.
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl--E-----~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL--E-----MGKKENIKRLIVT 118 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES--S-----SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC--C-----CCHHHHHHHHHHH
Confidence 4589999999999999999998765544355666642 1 3445666666554
No 361
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.84 E-value=0.071 Score=55.25 Aligned_cols=26 Identities=19% Similarity=0.096 Sum_probs=22.8
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHh
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
...|.|.|++|.||||+|+.++.++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998754
No 362
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=91.84 E-value=0.15 Score=55.07 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=23.1
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHH
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
...+|.|.|++|.||||+|+++..+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998764
No 363
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=91.80 E-value=0.56 Score=54.35 Aligned_cols=43 Identities=16% Similarity=0.167 Sum_probs=30.0
Q ss_pred HHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhcccc
Q 001348 99 ARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFE 144 (1094)
Q Consensus 99 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 144 (1094)
..++.+...+..+. +.+.|.|.+|.||||++.++...+...-.
T Consensus 32 ~av~~~~~~i~~~~---~~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 32 NAFNIVMKAIKEKK---HHVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp HHHHHHHHHHHSSS---CEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcCC---CEEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 34444444443222 38899999999999999999987655433
No 364
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.78 E-value=0.057 Score=55.47 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=22.6
Q ss_pred EEEEEecCCCchhhHHHHHHHHHhc
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQISR 141 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~~~~ 141 (1094)
+|+|.|+.|.||||+|+.+...+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 7899999999999999999987654
No 365
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.74 E-value=0.065 Score=54.46 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=22.2
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHh
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
++++|+|+.|.|||||++.+.....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5789999999999999999987654
No 366
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.69 E-value=0.087 Score=55.84 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=22.6
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
..+|+|.|+.|.||||+|+.++.++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999999765
No 367
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=91.69 E-value=0.13 Score=53.33 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=26.3
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHhccccceEEee
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMA 150 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 150 (1094)
.+++|.|.+|.|||||++.++......=..+.|+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 58999999999999999999976543323344543
No 368
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.62 E-value=0.11 Score=56.83 Aligned_cols=28 Identities=36% Similarity=0.474 Sum_probs=24.7
Q ss_pred CCeEEEEEEecCCCchhhHHHHHHHHHh
Q 001348 113 PNIQIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 113 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
....+|+|.|..|.||||||+.+...+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 4568999999999999999999998654
No 369
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=91.62 E-value=0.9 Score=50.85 Aligned_cols=49 Identities=22% Similarity=0.195 Sum_probs=35.2
Q ss_pred CCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHH
Q 001348 91 FEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 91 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
...++|....+.++...+..-...-..|.|+|.+|.||+++|+.+...-
T Consensus 128 ~~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s 176 (368)
T 3dzd_A 128 EIEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYS 176 (368)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhc
Confidence 3568898888777776654322222346699999999999999988643
No 370
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=91.56 E-value=0.17 Score=57.90 Aligned_cols=52 Identities=25% Similarity=0.321 Sum_probs=35.4
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHhc-cccceEEeeechhhhccCCChHHHHHHHHH
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQISR-KFESKCFMANVREESEKGGGLVHLRDRLLS 171 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 171 (1094)
..++|.|.+|+|||+|+..+.+.+.. +-+.++|. -+.+.. ....++.+.+..
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~-~iGER~---rEv~e~~~~~~~ 218 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFG-GVGERT---REGNDLYMEMKE 218 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEE-EESCCS---HHHHHHHHHHHH
T ss_pred CeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEE-EcccCc---HHHHHHHHhhhc
Confidence 47899999999999999999998654 33555555 444432 234555555543
No 371
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.56 E-value=0.84 Score=51.88 Aligned_cols=29 Identities=31% Similarity=0.283 Sum_probs=25.3
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
..++|+|+|.+|+||||++..++..++.+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 46799999999999999999999876654
No 372
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.52 E-value=0.12 Score=51.46 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=23.1
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHh
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
-.+|+|.|+.|.||||+|+.+...+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46899999999999999999998764
No 373
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.51 E-value=0.09 Score=54.66 Aligned_cols=25 Identities=24% Similarity=0.322 Sum_probs=22.2
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
...|+|.|++|+||||+|+.+..++
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999998764
No 374
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.50 E-value=0.088 Score=54.63 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=22.9
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHH
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
.-.+++|+|+.|.|||||++.++...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34799999999999999999998753
No 375
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.49 E-value=0.1 Score=53.67 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.6
Q ss_pred EEEEEecCCCchhhHHHHHHHHH
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
.|+|.|++|+||||+|+.+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 376
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.47 E-value=0.1 Score=52.57 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=22.4
Q ss_pred EEEEEecCCCchhhHHHHHHHHHhc
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQISR 141 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~~~~ 141 (1094)
+|+|.|+.|+||||+|+.+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999987644
No 377
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.45 E-value=0.11 Score=50.57 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=23.3
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHH
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
.-.+++|.|+.|.|||||++.++.-+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 44699999999999999999999865
No 378
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.42 E-value=0.092 Score=53.72 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=22.4
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
-.+++|+|+.|.|||||++.+..-.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998765
No 379
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.38 E-value=0.12 Score=53.05 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=23.4
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHh
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
..+|.|.|+.|.||||+|+.+...+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999998764
No 380
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.30 E-value=0.11 Score=54.69 Aligned_cols=26 Identities=19% Similarity=0.372 Sum_probs=23.2
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHH
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
...+|+|.|+.|.||||||+.+...+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999998865
No 381
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=91.21 E-value=0.077 Score=64.05 Aligned_cols=51 Identities=18% Similarity=0.269 Sum_probs=41.6
Q ss_pred CCCCCCeeehhHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 88 SSDFEGLIGLDARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 88 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
|...+.++|.+..++.+...+..+ ..+.|+|++|+||||||+.++..+...
T Consensus 37 p~~l~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 37 EKLIDQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp SSHHHHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred ccccceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 445567999999998888887644 488999999999999999999865443
No 382
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=91.13 E-value=0.23 Score=54.68 Aligned_cols=51 Identities=18% Similarity=0.098 Sum_probs=35.8
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHHHHHhh
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDRLLSQI 173 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l 173 (1094)
.++.|.|.+|+||||+|..++..+..+=..++|++- + ....++...+++..
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl--E-----ms~~ql~~Rlls~~ 97 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL--E-----MSAEQLALRALSDL 97 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES--S-----SCHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC--C-----CCHHHHHHHHHHHh
Confidence 588999999999999999999876543233455531 1 44557777776554
No 383
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.11 E-value=0.12 Score=55.62 Aligned_cols=25 Identities=32% Similarity=0.638 Sum_probs=22.3
Q ss_pred CCeEEEEEEecCCCchhhHHHHHHH
Q 001348 113 PNIQIMGIWGMGGIGKTTIAGVLFN 137 (1094)
Q Consensus 113 ~~~~vv~I~G~gGiGKTtLA~~v~~ 137 (1094)
....+|+|.|+.|.||||+|+.+..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999999999983
No 384
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.05 E-value=0.12 Score=56.85 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=22.7
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHh
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
++|+|.|+.|+||||||+.++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998654
No 385
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.02 E-value=0.16 Score=53.38 Aligned_cols=36 Identities=25% Similarity=0.201 Sum_probs=25.8
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHh-ccccceEEee
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQIS-RKFESKCFMA 150 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~ 150 (1094)
-.+++|.|+.|.|||||++.++.... ..-...+|+.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 35999999999999999999985322 2223444543
No 386
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=90.99 E-value=0.085 Score=54.51 Aligned_cols=25 Identities=36% Similarity=0.526 Sum_probs=22.3
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
-.+++|+|+.|.|||||++.+....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998754
No 387
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=90.98 E-value=0.15 Score=53.41 Aligned_cols=36 Identities=19% Similarity=0.172 Sum_probs=27.4
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhccccceEEee
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMA 150 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 150 (1094)
-.++.|.|.+|+||||||..++......=..++|+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 358999999999999999998876544434456654
No 388
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.97 E-value=0.12 Score=53.19 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.3
Q ss_pred EEEEEecCCCchhhHHHHHHHHH
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
.|+|.|++|+||||+|+.+..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998754
No 389
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.95 E-value=0.13 Score=52.96 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCchhhHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFN 137 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~ 137 (1094)
..+|+|.|+.|.||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999975
No 390
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=90.91 E-value=0.11 Score=55.11 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=23.7
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHh
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
...+|.|.|++|.||||+|+.+...+.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 457899999999999999999988653
No 391
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=90.89 E-value=0.12 Score=54.04 Aligned_cols=25 Identities=28% Similarity=0.215 Sum_probs=22.3
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
-.+++|+|++|+||||||+.++..+
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 3599999999999999999999853
No 392
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=90.84 E-value=0.17 Score=52.11 Aligned_cols=43 Identities=21% Similarity=0.223 Sum_probs=31.3
Q ss_pred hHHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 98 DARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 98 ~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
+...+++.+.+.. ...++|+|+|.+|+|||||+.++.......
T Consensus 15 ~~~~~~~~~~~~~--~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 15 KRLAEKNREALRE--SGTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HHHHHHHHHHHHH--HTCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhcc--cCceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 3444555554432 357899999999999999999998875444
No 393
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.84 E-value=0.13 Score=52.30 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.9
Q ss_pred EEEEEecCCCchhhHHHHHHHHHh
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
+|+|.|+.|.||||+|+.+...+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999988653
No 394
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.82 E-value=0.11 Score=53.70 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=21.7
Q ss_pred EEEEEEecCCCchhhHHHHHHHHH
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
..|.|.|++|.||||+|+.++.++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999876
No 395
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.82 E-value=0.13 Score=53.43 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=22.5
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
..+|+|.|++|.||||+|+.+..++
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999876
No 396
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=90.77 E-value=0.61 Score=53.98 Aligned_cols=50 Identities=18% Similarity=0.186 Sum_probs=33.8
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhcccc-ceEEeeechhhhccCCChHHHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRKFE-SKCFMANVREESEKGGGLVHLRDRLLS 171 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-~~~~~~~~~~~~~~~~~~~~l~~~ll~ 171 (1094)
-.++.|.|.+|+||||||..++..+...-. .++|+.. + ....++.+.++.
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~--E-----~s~~~l~~r~~~ 253 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL--E-----MSAQQLVMRMLC 253 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES--S-----SCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC--C-----CCHHHHHHHHHH
Confidence 358999999999999999999987654322 4555541 1 233455555544
No 397
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=90.67 E-value=0.12 Score=51.96 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=21.8
Q ss_pred EEEEEecCCCchhhHHHHHHHHHh
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
+++|+|+.|+|||||++.++..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 689999999999999999998654
No 398
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=90.65 E-value=0.37 Score=48.79 Aligned_cols=22 Identities=32% Similarity=0.261 Sum_probs=18.6
Q ss_pred EEEEEecCCCchhhHHHHHHHH
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQ 138 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~ 138 (1094)
++.|.|.+|.|||++|......
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 6779999999999999886544
No 399
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=90.63 E-value=0.42 Score=56.92 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=23.5
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
+++.|.|.+|.||||++.++...+...
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~ 231 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESL 231 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 588899999999999999999876554
No 400
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.60 E-value=0.13 Score=50.82 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=23.9
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhc
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISR 141 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 141 (1094)
.++++|.|..|.|||||++.+...+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 568999999999999999999987654
No 401
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=90.58 E-value=0.25 Score=50.96 Aligned_cols=29 Identities=24% Similarity=0.384 Sum_probs=24.4
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
....|+|+|.+|+|||||+.++.......
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 46789999999999999999998865433
No 402
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.49 E-value=0.13 Score=52.14 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=22.0
Q ss_pred EEEEEEecCCCchhhHHHHHHHHH
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
.+|+|.|+.|.||||+|+.+..++
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998865
No 403
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.48 E-value=0.15 Score=52.33 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=20.8
Q ss_pred EEEEEecCCCchhhHHHHHHHHH
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
.|+|.|++|.||||+|+.+..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998865
No 404
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.46 E-value=0.14 Score=53.33 Aligned_cols=26 Identities=27% Similarity=0.141 Sum_probs=22.8
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHh
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
...|.|.|+.|.||||+|+.++.++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998763
No 405
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=90.45 E-value=0.13 Score=56.12 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=22.0
Q ss_pred EEEEEEecCCCchhhHHHHHHHHH
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
++|.|+|+.|+||||||+.++.++
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999999865
No 406
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=90.37 E-value=0.11 Score=56.29 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=20.5
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHh
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
...+|+|.|..|.||||+|+.+...+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999988654
No 407
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.37 E-value=0.16 Score=56.95 Aligned_cols=27 Identities=30% Similarity=0.273 Sum_probs=23.7
Q ss_pred CCeEEEEEEecCCCchhhHHHHHHHHH
Q 001348 113 PNIQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 113 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
...++++|+|++|.|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 445699999999999999999999754
No 408
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.37 E-value=0.15 Score=52.81 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=21.0
Q ss_pred EEEEEecCCCchhhHHHHHHHHH
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
.|+|.|++|+||||+|+.+..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998865
No 409
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=90.37 E-value=0.94 Score=52.17 Aligned_cols=52 Identities=17% Similarity=0.026 Sum_probs=35.9
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhccc-cceEEeeechhhhccCCChHHHHHHHHHhh
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRKF-ESKCFMANVREESEKGGGLVHLRDRLLSQI 173 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l 173 (1094)
-.++.|.|.+|+||||+|..++..+.... ..++|++. + ....++...++...
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl--E-----~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL--E-----MPAAQLTLRMMCSE 252 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES--S-----SCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC--C-----CCHHHHHHHHHHHH
Confidence 35899999999999999999998765432 34555542 1 34456776666544
No 410
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.28 E-value=0.095 Score=51.77 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=23.0
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHhc
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQISR 141 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 141 (1094)
++|+|+|..|.|||||++.+...+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 58999999999999999999986554
No 411
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=90.16 E-value=0.2 Score=55.72 Aligned_cols=49 Identities=24% Similarity=0.268 Sum_probs=33.3
Q ss_pred HHHHhccc-cCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEee
Q 001348 102 ERIKSLLC-IGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMA 150 (1094)
Q Consensus 102 ~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 150 (1094)
..|..+|. .+-..-+++.|+|.+|+||||||.+++......=..++|+.
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 34444453 22223468999999999999999999976654434456665
No 412
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.11 E-value=0.17 Score=55.32 Aligned_cols=28 Identities=36% Similarity=0.327 Sum_probs=24.5
Q ss_pred CCeEEEEEEecCCCchhhHHHHHHHHHh
Q 001348 113 PNIQIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 113 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
....+|+|.|..|.|||||++.+...+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999988664
No 413
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.09 E-value=0.1 Score=54.43 Aligned_cols=25 Identities=36% Similarity=0.365 Sum_probs=16.5
Q ss_pred eEEEEEEecCCCchhhHHHHHH-HHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLF-NQI 139 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~-~~~ 139 (1094)
-.+++|+|+.|.|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3589999999999999999998 654
No 414
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.01 E-value=0.14 Score=52.36 Aligned_cols=23 Identities=35% Similarity=0.190 Sum_probs=20.9
Q ss_pred EEEEEEecCCCchhhHHHHHHHH
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQ 138 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~ 138 (1094)
.+++|+|+.|.|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 38999999999999999999864
No 415
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.97 E-value=0.11 Score=56.83 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=22.5
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
.++|.|+|+.|+||||||..++.++
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 4689999999999999999999764
No 416
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.91 E-value=0.25 Score=53.65 Aligned_cols=34 Identities=15% Similarity=0.144 Sum_probs=26.5
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHhcccc-ceEEe
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQISRKFE-SKCFM 149 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-~~~~~ 149 (1094)
.+++|.|.+|+|||||++.++..+...-. .++|+
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~ 70 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLA 70 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 48999999999999999999987654422 34454
No 417
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=89.80 E-value=0.21 Score=55.56 Aligned_cols=49 Identities=27% Similarity=0.321 Sum_probs=33.5
Q ss_pred HHHHhccc-cCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEee
Q 001348 102 ERIKSLLC-IGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMA 150 (1094)
Q Consensus 102 ~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 150 (1094)
..|..+|. .+-..-+++.|.|.+|+||||||..++......-..++|+.
T Consensus 49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 34444453 22223458999999999999999999987654434566765
No 418
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=89.78 E-value=0.66 Score=53.36 Aligned_cols=51 Identities=20% Similarity=0.077 Sum_probs=34.5
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHHHHHh
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDRLLSQ 172 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 172 (1094)
-.++.|.|.+|+||||+|..++..+..+=..++|++- + ....++...+++.
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl--E-----ms~~ql~~R~~~~ 247 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL--E-----MGKKENIKRLIVT 247 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS--S-----SCTTHHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC--C-----CCHHHHHHHHHHH
Confidence 4589999999999999999999876554234555531 1 2334566655544
No 419
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=89.58 E-value=0.15 Score=52.92 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=20.4
Q ss_pred EEEEEEecCCCchhhHHHHHHH
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFN 137 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~ 137 (1094)
.+++|+|+.|.|||||++.++.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999875
No 420
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=89.55 E-value=0.17 Score=53.10 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=22.2
Q ss_pred CCeEEEEEEecCCCchhhHHHHHHHH
Q 001348 113 PNIQIMGIWGMGGIGKTTIAGVLFNQ 138 (1094)
Q Consensus 113 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 138 (1094)
.. .+++|+|+.|.|||||++.++.-
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCC
Confidence 45 79999999999999999999863
No 421
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.45 E-value=0.19 Score=52.49 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=23.5
Q ss_pred CCeEEEEEEecCCCchhhHHHHHHHHH
Q 001348 113 PNIQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 113 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
....+|+|.|+.|.||||+|+.+..++
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345689999999999999999998765
No 422
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=89.35 E-value=0.44 Score=55.48 Aligned_cols=30 Identities=30% Similarity=0.347 Sum_probs=24.7
Q ss_pred CCeEEEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 113 PNIQIMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 113 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
...++|+|+|.+|+||||++.+++..++.+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~ 128 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRK 128 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 347899999999999999999999876654
No 423
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=89.31 E-value=0.15 Score=53.25 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCchhhHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFN 137 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~ 137 (1094)
-.+++|+|+.|.|||||++.+..
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 35899999999999999999875
No 424
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.13 E-value=0.21 Score=53.97 Aligned_cols=25 Identities=24% Similarity=0.398 Sum_probs=22.2
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
.++|+|.|+.|+||||||..++.++
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3689999999999999999998754
No 425
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.12 E-value=0.33 Score=52.17 Aligned_cols=26 Identities=31% Similarity=0.372 Sum_probs=22.8
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHhc
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQISR 141 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 141 (1094)
.+++|+|.+|+||||||..++..+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 58999999999999999999976543
No 426
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.03 E-value=0.25 Score=53.21 Aligned_cols=26 Identities=23% Similarity=0.133 Sum_probs=23.1
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHH
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
..++|+|.|+.|+||||||..++.++
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35789999999999999999999864
No 427
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=88.97 E-value=0.21 Score=54.34 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=21.0
Q ss_pred EEEEEEecCCCchhhHHHHHHHH
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQ 138 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~ 138 (1094)
.+|.|.|++|.||||+|+.+..+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999874
No 428
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=88.96 E-value=0.36 Score=51.36 Aligned_cols=27 Identities=33% Similarity=0.557 Sum_probs=23.8
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
++|+|.|-||+||||+|..++..++.+
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~ 28 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAM 28 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHC
Confidence 678889999999999999999877654
No 429
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=88.94 E-value=0.34 Score=52.84 Aligned_cols=30 Identities=30% Similarity=0.533 Sum_probs=25.5
Q ss_pred CCeEEEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 113 PNIQIMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 113 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
...++|+|+|-||+||||+|..++..+..+
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~ 68 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSIL 68 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHC
Confidence 357899999999999999999999877654
No 430
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=88.86 E-value=3.6 Score=46.26 Aligned_cols=46 Identities=17% Similarity=0.180 Sum_probs=34.4
Q ss_pred CCeeehhHHHHHHHhccccCC-CCeEEEEEEecCCCchhhHHHHHHHH
Q 001348 92 EGLIGLDARIERIKSLLCIGL-PNIQIMGIWGMGGIGKTTIAGVLFNQ 138 (1094)
Q Consensus 92 ~~~vGr~~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~v~~~ 138 (1094)
..++|....++++.+.+..-. .+. .|.|.|..|.|||++|+.+...
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~a~~~~-~vli~Ge~GtGK~~lAr~ih~~ 183 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKISCAEC-PVLITGESGVGKEVVARLIHKL 183 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHHTTCCS-CEEEECSTTSSHHHHHHHHHHH
T ss_pred hhhhhccHHhhHHHHHHHHhcCCCC-CeEEecCCCcCHHHHHHHHHHh
Confidence 467888888877777664322 233 3489999999999999998874
No 431
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=88.85 E-value=0.36 Score=51.08 Aligned_cols=27 Identities=30% Similarity=0.374 Sum_probs=24.1
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHh
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
...++.+.|.||+||||++..++..+.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999998766
No 432
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=88.79 E-value=0.33 Score=49.79 Aligned_cols=26 Identities=19% Similarity=0.050 Sum_probs=22.2
Q ss_pred EEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
.|.+.|.||+||||+|..++.....+
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 47789999999999999999876544
No 433
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.77 E-value=0.25 Score=51.30 Aligned_cols=28 Identities=21% Similarity=0.392 Sum_probs=24.8
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHhc
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQISR 141 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 141 (1094)
...+|+|.|+.|.||||+++.+...+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4578999999999999999999998764
No 434
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=88.73 E-value=0.18 Score=52.83 Aligned_cols=24 Identities=21% Similarity=0.429 Sum_probs=21.4
Q ss_pred eEEEEEEecCCCchhhHHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQ 138 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~ 138 (1094)
-.+++|+|+.|.|||||++.++.-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999864
No 435
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=88.68 E-value=0.47 Score=52.61 Aligned_cols=29 Identities=28% Similarity=0.328 Sum_probs=25.0
Q ss_pred CCeEEEEEEecCCCchhhHHHHHHHHHhc
Q 001348 113 PNIQIMGIWGMGGIGKTTIAGVLFNQISR 141 (1094)
Q Consensus 113 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 141 (1094)
.+..+|+|+|.+|.|||||+..+......
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~ 82 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIR 82 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 46789999999999999999999876543
No 436
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=88.68 E-value=0.18 Score=54.04 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=20.3
Q ss_pred EEEEEEecCCCchhhHHHHHHH
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFN 137 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~ 137 (1094)
.+++|+|+.|.|||||++.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999999875
No 437
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=88.67 E-value=0.36 Score=52.33 Aligned_cols=36 Identities=25% Similarity=0.261 Sum_probs=28.2
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHhccccceEEee
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMA 150 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 150 (1094)
..++++|+|.+|+||||+|..++..++.. ...+.+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~-~~~v~l~ 132 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLV 132 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEe
Confidence 45799999999999999999999876544 3444443
No 438
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=88.61 E-value=0.21 Score=52.72 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=20.7
Q ss_pred EEEEEEecCCCchhhHHHHHHH
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFN 137 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~ 137 (1094)
.+++|+|+.|.|||||++.++.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999987
No 439
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=88.52 E-value=0.26 Score=51.68 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=23.1
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHh
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
...|+|.|..|+||||+|+.++..+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998764
No 440
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=88.51 E-value=0.18 Score=53.56 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCchhhHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFN 137 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~ 137 (1094)
-.+++|+|+.|.|||||++.++.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999876
No 441
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=88.50 E-value=0.36 Score=49.19 Aligned_cols=29 Identities=21% Similarity=0.519 Sum_probs=25.2
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHhcccc
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQISRKFE 144 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 144 (1094)
+.|+|-|.-|+||||+++.+++.+...++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~ 31 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYD 31 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSC
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCC
Confidence 57999999999999999999998865544
No 442
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=88.45 E-value=0.22 Score=53.17 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=21.4
Q ss_pred eEEEEEEecCCCchhhHHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQ 138 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~ 138 (1094)
-.+++|+|+.|.|||||++.++.-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999873
No 443
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.43 E-value=0.19 Score=52.71 Aligned_cols=22 Identities=36% Similarity=0.527 Sum_probs=20.5
Q ss_pred EEEEEEecCCCchhhHHHHHHH
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFN 137 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~ 137 (1094)
.+++|+|+.|.|||||++.++.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999876
No 444
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=88.38 E-value=0.21 Score=52.56 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCCchhhHHHHHHH
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFN 137 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~ 137 (1094)
.-.+++|+|+.|.|||||++.++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346999999999999999999886
No 445
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=88.38 E-value=0.19 Score=53.57 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=20.5
Q ss_pred EEEEEEecCCCchhhHHHHHHH
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFN 137 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~ 137 (1094)
.+++|+|+.|.|||||++.++.
T Consensus 38 e~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999999886
No 446
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=88.37 E-value=0.25 Score=49.55 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=21.5
Q ss_pred eEEEEEEecCCCchhhHHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQ 138 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~ 138 (1094)
.-.|+|+|..|+|||||++.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 567899999999999999998873
No 447
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=88.34 E-value=0.19 Score=62.56 Aligned_cols=53 Identities=21% Similarity=0.310 Sum_probs=40.8
Q ss_pred CCCCeeehhHHHHHHHhccccC-----------CCCeEEEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 90 DFEGLIGLDARIERIKSLLCIG-----------LPNIQIMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 90 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
..++++|.+...++|.+.+... -...+.+.++|++|.||||||++++......
T Consensus 475 ~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~ 538 (806)
T 1ypw_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp SSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCC
T ss_pred cccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3456889999888888876421 1234568899999999999999999987544
No 448
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=88.29 E-value=0.17 Score=52.01 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.8
Q ss_pred EEEEEEecCCCchhhHHHHHHHH
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQ 138 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~ 138 (1094)
.+++|+|+.|.|||||++.++.-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999998863
No 449
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=88.25 E-value=0.2 Score=53.31 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCchhhHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFN 137 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~ 137 (1094)
-.+++|+|+.|.|||||++.++.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Confidence 35899999999999999999886
No 450
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=88.24 E-value=0.2 Score=53.20 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=20.5
Q ss_pred EEEEEEecCCCchhhHHHHHHH
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFN 137 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~ 137 (1094)
.+++|+|+.|.|||||++.++.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999876
No 451
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=88.24 E-value=0.42 Score=51.54 Aligned_cols=28 Identities=32% Similarity=0.587 Sum_probs=24.2
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
.++|+|.|-||+||||+|..++..+..+
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~ 29 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEM 29 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHC
Confidence 4688889999999999999999877654
No 452
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=88.21 E-value=0.29 Score=54.86 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=22.6
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHh
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
++|+|.|+.|+||||||..++.++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5899999999999999999998754
No 453
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=88.10 E-value=0.21 Score=52.01 Aligned_cols=23 Identities=26% Similarity=0.554 Sum_probs=21.1
Q ss_pred EEEEEEecCCCchhhHHHHHHHH
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQ 138 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~ 138 (1094)
.+++|+|+.|.|||||++.++.-
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999864
No 454
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=87.99 E-value=0.21 Score=52.60 Aligned_cols=22 Identities=32% Similarity=0.664 Sum_probs=20.4
Q ss_pred EEEEEEecCCCchhhHHHHHHH
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFN 137 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~ 137 (1094)
.+++|+|+.|.|||||++.++.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999876
No 455
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.94 E-value=0.21 Score=52.84 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCchhhHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFN 137 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~ 137 (1094)
-.+++|+|+.|.|||||++.++.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999876
No 456
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=87.90 E-value=0.52 Score=50.89 Aligned_cols=34 Identities=12% Similarity=0.134 Sum_probs=26.9
Q ss_pred EEEEEecCCCchhhHHHHHHHHHhccc--cceEEee
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQISRKF--ESKCFMA 150 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~~~ 150 (1094)
++-|+|.+|+||||||.+++.....++ ..++|++
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 689999999999999999988766543 3456664
No 457
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=87.85 E-value=0.68 Score=51.68 Aligned_cols=49 Identities=27% Similarity=0.300 Sum_probs=33.2
Q ss_pred HHHHhccc-cCCCCeEEEEEEecCCCchhhHHHHHHHHHhccccceEEee
Q 001348 102 ERIKSLLC-IGLPNIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMA 150 (1094)
Q Consensus 102 ~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 150 (1094)
..|..+|. .+-..-+++.|+|.+|+||||||..++......-..++|+.
T Consensus 60 ~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 60 LSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 34444453 12123458889999999999999999887654434566765
No 458
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=87.79 E-value=1.1 Score=45.41 Aligned_cols=110 Identities=15% Similarity=-0.004 Sum_probs=52.8
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHhccccceEEeeechhhhccCCChHHHHHHHHHhhhccCCcccCCCchHHHHHHh
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMANVREESEKGGGLVHLRDRLLSQILDESIRIETPYIPHYIRERL 193 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 193 (1094)
.-++..++|.-|.||||.|...+.+...+-..++.+.-... .+ .+-..+ .+.+......... .....+.+.+
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d--~R-~ge~~i----~s~~g~~~~a~~~-~~~~~~~~~~ 98 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID--NR-YSEEDV----VSHNGLKVKAVPV-SASKDIFKHI 98 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC------------------------CCEEEC-SSGGGGGGGC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC--Cc-chHHHH----HhhcCCeeEEeec-CCHHHHHHHH
Confidence 34788999999999999999988876554333333321111 11 121222 2222111110000 1111222223
Q ss_pred cCCeEEEEEecCCC--hHhHHHHhcCCCCCCCCceEEEEeCCh
Q 001348 194 QCMKVFIVLDDVNK--FRQLEYLAGGLDRFGLGSRIIVTSRDK 234 (1094)
Q Consensus 194 ~~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIiiTTR~~ 234 (1094)
.++-=+|++|.+.- .++++.+.... ..|-.||+|-++.
T Consensus 99 ~~~~dvViIDEaQF~~~~~V~~l~~l~---~~~~~Vi~~Gl~~ 138 (214)
T 2j9r_A 99 TEEMDVIAIDEVQFFDGDIVEVVQVLA---NRGYRVIVAGLDQ 138 (214)
T ss_dssp CSSCCEEEECCGGGSCTTHHHHHHHHH---HTTCEEEEEECSB
T ss_pred hcCCCEEEEECcccCCHHHHHHHHHHh---hCCCEEEEEeccc
Confidence 33334999998833 34554433211 1367899999954
No 459
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=87.67 E-value=0.31 Score=49.47 Aligned_cols=25 Identities=24% Similarity=0.166 Sum_probs=23.0
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHh
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
.+|+|.|+.|.||||+|+.++.++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 4899999999999999999999774
No 460
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=87.67 E-value=0.22 Score=52.83 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=21.3
Q ss_pred eEEEEEEecCCCchhhHHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQ 138 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~ 138 (1094)
-.+++|+|+.|.|||||++.++.-
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 358999999999999999999863
No 461
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=87.66 E-value=0.59 Score=51.68 Aligned_cols=29 Identities=28% Similarity=0.381 Sum_probs=24.7
Q ss_pred CCeEEEEEEecCCCchhhHHHHHHHHHhc
Q 001348 113 PNIQIMGIWGMGGIGKTTIAGVLFNQISR 141 (1094)
Q Consensus 113 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 141 (1094)
....+|+|+|.+|+|||||.+.+......
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 45679999999999999999999875543
No 462
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=87.66 E-value=0.28 Score=53.21 Aligned_cols=26 Identities=15% Similarity=0.296 Sum_probs=23.0
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHH
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
.-.+++|+|+.|.|||||++.+..-+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34689999999999999999999765
No 463
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=87.64 E-value=0.23 Score=52.36 Aligned_cols=32 Identities=25% Similarity=0.352 Sum_probs=24.9
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHhccccceEEe
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFM 149 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 149 (1094)
.+++|+|+.|.|||||++.++.-+... +.+++
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~p~--G~i~~ 58 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTSGK--GSIQF 58 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCE--EEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCC--eEEEE
Confidence 489999999999999999988654433 44444
No 464
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=87.62 E-value=0.34 Score=56.38 Aligned_cols=43 Identities=2% Similarity=-0.097 Sum_probs=30.3
Q ss_pred HHHHHHHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHHhc
Q 001348 99 ARIERIKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQISR 141 (1094)
Q Consensus 99 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 141 (1094)
+-.+.+.+..........+|.+.|+.|.||||+|++++.++..
T Consensus 379 eV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 379 EVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp HHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred hhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3344444443222234578999999999999999999998763
No 465
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=87.54 E-value=0.23 Score=53.10 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCchhhHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFN 137 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~ 137 (1094)
-.+++|+|+.|.|||||++.++.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999876
No 466
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=87.48 E-value=0.56 Score=52.02 Aligned_cols=36 Identities=25% Similarity=0.311 Sum_probs=26.9
Q ss_pred HHhccccCCCCeEEEEEEecCCCchhhHHHHHHHHH
Q 001348 104 IKSLLCIGLPNIQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 104 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
|..+|..+-..-.++.|+|.+|+||||||..++...
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 334443222345799999999999999999998864
No 467
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=87.47 E-value=0.25 Score=49.58 Aligned_cols=23 Identities=30% Similarity=0.267 Sum_probs=20.9
Q ss_pred EEEEEEecCCCchhhHHHHHHHH
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQ 138 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~ 138 (1094)
+.|.|.|+.|+||||||.++..+
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 67889999999999999999875
No 468
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=87.42 E-value=0.23 Score=53.24 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=20.9
Q ss_pred EEEEEEecCCCchhhHHHHHHHH
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQ 138 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~ 138 (1094)
.+++|+|+.|.|||||++.++.-
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999998864
No 469
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=87.41 E-value=0.33 Score=46.63 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=20.1
Q ss_pred EEEEEEecCCCchhhHHHHHHH
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFN 137 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~ 137 (1094)
+.|+|+|.+|+|||||+.++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5688999999999999999886
No 470
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=87.39 E-value=0.24 Score=52.85 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCchhhHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFN 137 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~ 137 (1094)
-.+++|+|+.|.|||||++.++.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999876
No 471
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=87.37 E-value=0.24 Score=52.31 Aligned_cols=23 Identities=30% Similarity=0.637 Sum_probs=20.9
Q ss_pred EEEEEEecCCCchhhHHHHHHHH
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQ 138 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~ 138 (1094)
.+++|+|+.|.|||||++.++.-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999863
No 472
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=87.35 E-value=0.47 Score=55.76 Aligned_cols=30 Identities=20% Similarity=0.161 Sum_probs=25.3
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHHhccc
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQISRKF 143 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 143 (1094)
...+|.++|++|.||||+|++++..+...|
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 456899999999999999999998765444
No 473
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=87.26 E-value=0.56 Score=53.17 Aligned_cols=87 Identities=13% Similarity=0.179 Sum_probs=47.8
Q ss_pred EEEEEecCCCchhhHHHHHHHHHhcccc----ceEEeeechhhhccCCChHHHHHHHHHh-hhccCCc---ccCCCc---
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQISRKFE----SKCFMANVREESEKGGGLVHLRDRLLSQ-ILDESIR---IETPYI--- 185 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~~~~~F~----~~~~~~~~~~~~~~~~~~~~l~~~ll~~-l~~~~~~---~~~~~~--- 185 (1094)
.++|.|..|+|||||+.++++....+-+ .++|. -+.+.. ..+.++.+.+... ......- ..+...
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~-~iGeR~---~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r 228 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFA-AIGITF---EEAEFFMEDFRQTGAIDRSVMFMNLANDPAIER 228 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEE-EEEECH---HHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHH
T ss_pred EEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEE-EecCCc---HHHHHHHHHHhhcCCccceEEEEECCCCCHHHH
Confidence 4789999999999999999886544223 33444 333322 2244555554332 1111100 011111
Q ss_pred ------hHHHHHHhc---CCeEEEEEecCCC
Q 001348 186 ------PHYIRERLQ---CMKVFIVLDDVNK 207 (1094)
Q Consensus 186 ------~~~l~~~L~---~kr~LlVLDdv~~ 207 (1094)
.-.+.++++ ++.+|+++||+..
T Consensus 229 ~~a~~~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 229 IATPRMALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 112444443 6899999999944
No 474
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=87.15 E-value=0.29 Score=49.41 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=21.1
Q ss_pred eEEEEEEecCCCchhhHHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQ 138 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~ 138 (1094)
.-.|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999873
No 475
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=87.14 E-value=0.32 Score=51.91 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=20.8
Q ss_pred EEEEEecCCCchhhHHHHHHHHH
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
.++|+|..|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999753
No 476
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=87.07 E-value=0.4 Score=52.79 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=22.8
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHh
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
-.++.|+|.+|+||||||..++....
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~ 132 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQ 132 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHh
Confidence 35899999999999999999997653
No 477
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=87.01 E-value=0.33 Score=54.00 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=23.9
Q ss_pred CCeEEEEEEecCCCchhhHHHHHHHHH
Q 001348 113 PNIQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 113 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
..-.++.|+|.+|+|||||++.++..+
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345799999999999999999999865
No 478
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=86.99 E-value=0.38 Score=46.83 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=20.0
Q ss_pred EEEEEEecCCCchhhHHHHHHH
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFN 137 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~ 137 (1094)
..|+|+|.+|+|||||.+++..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5789999999999999999875
No 479
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=86.98 E-value=0.23 Score=56.84 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=22.7
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHHH
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
...+|.|+|++|.||||+|++++.+.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 46799999999999999999988643
No 480
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=86.81 E-value=0.34 Score=48.09 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.8
Q ss_pred EEEEEecCCCchhhHHHHHHHHH
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
+.+|+|..|.|||||+.+++--+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 88999999999999999998644
No 481
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=86.61 E-value=0.65 Score=48.47 Aligned_cols=39 Identities=18% Similarity=0.318 Sum_probs=27.9
Q ss_pred CeEEEEEE-ecCCCchhhHHHHHHHHHhccccceEEeeec
Q 001348 114 NIQIMGIW-GMGGIGKTTIAGVLFNQISRKFESKCFMANV 152 (1094)
Q Consensus 114 ~~~vv~I~-G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 152 (1094)
..++|+|+ +-||+||||+|..++..+..+....+.+.+.
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~ 42 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDI 42 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEEC
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEEC
Confidence 45788887 5689999999999999887652333433333
No 482
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=86.52 E-value=0.62 Score=47.72 Aligned_cols=28 Identities=21% Similarity=0.267 Sum_probs=24.6
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhcc
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRK 142 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 142 (1094)
-.+|.|-|+.|.||||+++.+.+.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 3689999999999999999999987654
No 483
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=86.46 E-value=1.7 Score=49.36 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=28.0
Q ss_pred HHHHHHhcccc---CCCCeEEEEEEecCCCchhhHHHHHHH
Q 001348 100 RIERIKSLLCI---GLPNIQIMGIWGMGGIGKTTIAGVLFN 137 (1094)
Q Consensus 100 ~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~ 137 (1094)
-++.++..+.. .....++..|.|.+|.||||+.++.++
T Consensus 143 ~l~~l~~~~~~~~~~~~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 143 KLRTLRRLLKDGEPHVSSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp HHHHHHTTCBTTBCCCCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred HHHHHHHHHhhhccccccccEEEEEcCCCCCHHHHHHHHhc
Confidence 35556565422 234678999999999999999988764
No 484
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=86.25 E-value=0.59 Score=58.66 Aligned_cols=24 Identities=21% Similarity=-0.118 Sum_probs=21.1
Q ss_pred CeEEEEEEecCCCchhhHHHHHHH
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFN 137 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~ 137 (1094)
.-++++|.|+.|.||||+.+.+.-
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999843
No 485
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=86.24 E-value=0.35 Score=53.59 Aligned_cols=24 Identities=38% Similarity=0.386 Sum_probs=21.4
Q ss_pred eEEEEEEecCCCchhhHHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQ 138 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~ 138 (1094)
-.+++|.|+.|.|||||.+.++--
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCchHHHHHHHHhcC
Confidence 358999999999999999999863
No 486
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=86.23 E-value=0.31 Score=50.68 Aligned_cols=26 Identities=27% Similarity=0.068 Sum_probs=22.6
Q ss_pred CCeEEEEEEecCCCchhhHHHHHHHH
Q 001348 113 PNIQIMGIWGMGGIGKTTIAGVLFNQ 138 (1094)
Q Consensus 113 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 138 (1094)
..-.+|+|.|+.|.||||+++.+...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34579999999999999999998764
No 487
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=86.22 E-value=0.41 Score=52.53 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=22.7
Q ss_pred CeEEEEEEecCCCchhhHHHHHHHH
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFNQ 138 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~~ 138 (1094)
.+++++|.|+.|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4789999999999999999998864
No 488
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=86.16 E-value=0.32 Score=48.35 Aligned_cols=21 Identities=38% Similarity=0.430 Sum_probs=19.0
Q ss_pred EEEEEecCCCchhhHHHHHHH
Q 001348 117 IMGIWGMGGIGKTTIAGVLFN 137 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~ 137 (1094)
-|+|+|.+|+|||||++.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999875
No 489
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=86.06 E-value=0.31 Score=51.76 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=21.3
Q ss_pred EEEEEEecCCCchhhHHHHHHHHH
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
.+++|+|+.|.|||||++.++.-.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999988643
No 490
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=85.96 E-value=0.4 Score=46.14 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=19.6
Q ss_pred EEEEEecCCCchhhHHHHHHHH
Q 001348 117 IMGIWGMGGIGKTTIAGVLFNQ 138 (1094)
Q Consensus 117 vv~I~G~gGiGKTtLA~~v~~~ 138 (1094)
.|+|+|.+|+|||||+.++...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999863
No 491
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=85.93 E-value=0.6 Score=47.22 Aligned_cols=34 Identities=24% Similarity=0.269 Sum_probs=25.5
Q ss_pred EEEEEE-ecCCCchhhHHHHHHHHHhccccceEEe
Q 001348 116 QIMGIW-GMGGIGKTTIAGVLFNQISRKFESKCFM 149 (1094)
Q Consensus 116 ~vv~I~-G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 149 (1094)
++|+|+ +-||+||||+|..++..+..+=..++.+
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlli 36 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVV 36 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 678887 7799999999999998776543333333
No 492
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=85.89 E-value=0.34 Score=49.75 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=21.4
Q ss_pred EEEEEEecCCCchhhHHHHHHHHH
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQI 139 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~ 139 (1094)
.+|+|.|+.|.||||+|+.+...+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 379999999999999999998764
No 493
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=85.87 E-value=0.72 Score=52.28 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=21.2
Q ss_pred EEEEEEecCCCchhhHHHHHHHHHh
Q 001348 116 QIMGIWGMGGIGKTTIAGVLFNQIS 140 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA~~v~~~~~ 140 (1094)
..++|.|.+|+|||+|+.++++...
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~ 172 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQAT 172 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCB
T ss_pred CEEEEecCCCCCchHHHHHHHHHHH
Confidence 3678999999999999999988643
No 494
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=85.82 E-value=0.31 Score=55.31 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCchhhHHHHHHH
Q 001348 114 NIQIMGIWGMGGIGKTTIAGVLFN 137 (1094)
Q Consensus 114 ~~~vv~I~G~gGiGKTtLA~~v~~ 137 (1094)
...+|+|+|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 456999999999999999999987
No 495
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=85.71 E-value=0.49 Score=55.84 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=24.2
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhc
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISR 141 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 141 (1094)
-.+|+|.|+.|.||||||+.++..+..
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 468999999999999999999997754
No 496
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=85.67 E-value=1.3 Score=51.03 Aligned_cols=90 Identities=23% Similarity=0.247 Sum_probs=47.2
Q ss_pred EEEEEEecCCCchhhHH-HHHHHHHhc------cccceEEeeechhhhccCCChHHHHHHHHHhh-hccCCc---ccCCC
Q 001348 116 QIMGIWGMGGIGKTTIA-GVLFNQISR------KFESKCFMANVREESEKGGGLVHLRDRLLSQI-LDESIR---IETPY 184 (1094)
Q Consensus 116 ~vv~I~G~gGiGKTtLA-~~v~~~~~~------~F~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l-~~~~~~---~~~~~ 184 (1094)
..++|.|.+|+|||+|| ..+.+.... +-+..+.+.-+++... .+.++.+.+...= .....- ..+..
T Consensus 163 QR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~---Ev~~~~~~~~~~g~m~~tvvV~atad~p 239 (510)
T 2ck3_A 163 QRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRS---TVAQLVKRLTDADAMKYTIVVSATASDA 239 (510)
T ss_dssp CBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHH---HHHHHHHHHHHTTCGGGEEEEEECTTSC
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcH---HHHHHHHHHHhcCCcccceEEEECCCCC
Confidence 46789999999999995 467775542 2344343334444322 2445555554311 000000 00111
Q ss_pred c---------hHHHHHHh--cCCeEEEEEecCCCh
Q 001348 185 I---------PHYIRERL--QCMKVFIVLDDVNKF 208 (1094)
Q Consensus 185 ~---------~~~l~~~L--~~kr~LlVLDdv~~~ 208 (1094)
. .-.+.+++ +++.+||++||+...
T Consensus 240 ~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~ 274 (510)
T 2ck3_A 240 APLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQ 274 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHHH
Confidence 0 11233333 578999999998443
No 497
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=85.65 E-value=0.45 Score=49.80 Aligned_cols=36 Identities=25% Similarity=0.227 Sum_probs=26.0
Q ss_pred eEEEEEEecCCCchhhHHHHHHHH-HhccccceEEee
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQ-ISRKFESKCFMA 150 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~-~~~~F~~~~~~~ 150 (1094)
-.++.|.|.+|+||||+|..++.. ....-..++|+.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 358899999999999999997754 333334455553
No 498
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=85.63 E-value=0.88 Score=49.97 Aligned_cols=35 Identities=31% Similarity=0.408 Sum_probs=27.1
Q ss_pred eEEEEEEecCCCchhhHHHHHHHHHhccccceEEee
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQISRKFESKCFMA 150 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 150 (1094)
.+++...|-||+||||+|..++..++.+ ...+.+.
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~-G~rVLlv 48 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARS-GKKTLVI 48 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHC-CCcEEEE
Confidence 5677788999999999999999987765 3344443
No 499
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=85.49 E-value=0.35 Score=52.10 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=21.5
Q ss_pred eEEEEEEecCCCchhhHHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFNQ 138 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~~ 138 (1094)
-.+++|+|+.|.|||||++.++.-
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 358999999999999999999864
No 500
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=85.45 E-value=0.49 Score=46.94 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCchhhHHHHHHH
Q 001348 115 IQIMGIWGMGGIGKTTIAGVLFN 137 (1094)
Q Consensus 115 ~~vv~I~G~gGiGKTtLA~~v~~ 137 (1094)
...|+|+|.+|+|||||...+..
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45789999999999999999986
Done!