BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001349
(1094 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14,
An Armadillo Repeat Containing Protein From Arabidopsis
Thaliana
Length = 78
Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Query: 161 PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVL 220
P+ F CPI+ + DPV + TGQTYER +IQ+W++ G+ +CP +++ L L NYVL
Sbjct: 6 PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGL-TPNYVL 64
Query: 221 KRLIASWQEQN 231
K LIA W E N
Sbjct: 65 KSLIALWCESN 75
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 69/289 (23%), Positives = 116/289 (40%), Gaps = 52/289 (17%)
Query: 806 VHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQ 865
+H S + V + KI SG D TIK+W + L + + HT +V L +
Sbjct: 126 IHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDK--NTLECKRILTGHTGSV--LCLQY 181
Query: 866 SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLR 925
++ +GS D T RVW + E+ +H + AV +HLR
Sbjct: 182 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCE------AV---------------LHLR 220
Query: 926 NGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVH 985
++ SK D +I D+A+ T T++ R L+G V+
Sbjct: 221 FNNGMMVTCSK-----------------DRSIAVWDMASPTDITLR---RVLVGHRAAVN 260
Query: 986 ALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSE-VRAMVVSSELVYLGCKGGT 1044
+ + + +AS +K+W+TS V +L + + LV G T
Sbjct: 261 VVDFDDKYIVSASGD---RTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNT 317
Query: 1045 VEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093
+ +WD + + L+ G V+C+ D+ +V G DG+I+ W L
Sbjct: 318 IRLWDIECGACLRVLE-GHEELVRCIRFDNKR--IVSGAYDGKIKVWDL 363
Score = 36.6 bits (83), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 1039 GCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094
G + T++IWD K + + + TG +G V C+ D E ++ G+SD ++ W ++
Sbjct: 149 GLRDNTIKIWD-KNTLECKRILTGHTGSVLCLQYD--ERVIITGSSDSTVRVWDVN 201
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 97/251 (38%), Gaps = 50/251 (19%)
Query: 781 LAFEMVKVLSNGHDSSADFW--NHRELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVW 838
L ++ K++S D++ W N E + + G VL + I +G SD T++VW
Sbjct: 139 LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVW 198
Query: 839 ---TGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNE-------- 887
TG ++ + H +AV L + M+ + S D++ VW + +
Sbjct: 199 DVNTG-----EMLNTLIHHCEAVLHLRF--NNGMMVTCSKDRSIAVWDMASPTDITLRRV 251
Query: 888 ---EIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIK-VHLRNGKT----KLLNSSKYP- 938
V V D D+ +I +G + + + N T + LN K
Sbjct: 252 LVGHRAAVNVVDFDDK------------YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI 299
Query: 939 KCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTAS 998
CL V G D I+ D+ G + GH +L V ++ N + S
Sbjct: 300 ACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEEL------VRCIRFDNKRI--VS 351
Query: 999 TSLDGAAVKMW 1009
+ DG +K+W
Sbjct: 352 GAYDG-KIKVW 361
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 69/286 (24%), Positives = 124/286 (43%), Gaps = 29/286 (10%)
Query: 819 IACFR---DKIFSGHSDGTIKVW---TGRGSILHLIQQIREHTKAVTGLAILQSGEMLYS 872
I C + ++I SG D T+KVW TG+ ++ + HT V + + ++ S
Sbjct: 122 ITCLQFCGNRIVSGSDDNTLKVWSAVTGK-----CLRTLVGHTGGVWSSQMRDN--IIIS 174
Query: 873 GSLDKTARVWSIGNEE-IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKV-HLRNGKT- 929
GS D+T +VW+ E IH + H ++ + + + + A ++V + G+
Sbjct: 175 GSTDRTLKVWNAETGECIHTLYGH--TSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCL 232
Query: 930 -KLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQ 988
L+ +C+ +V G D ++ D T T GH N V++LQ
Sbjct: 233 HVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGH------TNRVYSLQ 286
Query: 989 VHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT-LSEVRAMVVSSELVYLGCKGGTVEI 1047
++ S SLD ++++W N + +L S M + ++ G TV+I
Sbjct: 287 FDG--IHVVSGSLD-TSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKI 343
Query: 1048 WDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093
WD K ++TLQ + L N+ F++ + DG ++ W L
Sbjct: 344 WDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDL 389
Score = 43.1 bits (100), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 79/334 (23%), Positives = 134/334 (40%), Gaps = 57/334 (17%)
Query: 781 LAFEMVKVLSNGHDSSADFWNH------RELVHVDSSENGKVLSIACFRDKIFSGHSDGT 834
L F +++S D++ W+ R LV G V S + I SG +D T
Sbjct: 125 LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV----GHTGGVWSSQMRDNIIISGSTDRT 180
Query: 835 IKVWTGR-GSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQ 893
+KVW G +H + HT V + + + + + SGS D T RVW I E C+
Sbjct: 181 LKVWNAETGECIHTLYG---HTSTVRCMHLHE--KRVVSGSRDATLRVWDI--ETGQCLH 233
Query: 894 VHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQG---KVYC 950
V + ++ C G + + K+ + + CL +QG +VY
Sbjct: 234 V--------LMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDP-ETETCLHTLQGHTNRVYS 284
Query: 951 ----------GCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTS 1000
G D +I+ D+ TG TGH+ L +++ + ++ + +
Sbjct: 285 LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS------GMELKDNILVSGNAD 338
Query: 1001 LDGAAVKMWSTSNYNMVGSL----PTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQ--I 1054
+ VK+W + +L S V + + V GTV++WD K I
Sbjct: 339 ---STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFI 395
Query: 1055 R-IETLQTGTSGKVQCMALDDNEEFL-VIGTSDG 1086
R + TL++G SG V N + + +G+ +G
Sbjct: 396 RNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG 429
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 17/113 (15%)
Query: 827 FSGHSDGTIKVWTGRGSILH---LIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWS 883
FS SDG I VW LH L++Q + HT + + I G L++G LD T R W
Sbjct: 157 FSCCSDGNIAVWD-----LHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD 211
Query: 884 IGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSK 936
+ E +Q HD QI +L + P G + V + + ++L+ +K
Sbjct: 212 L--REGRQLQQHDFTSQIFSLG-------YCPTGEWLAVGMESSNVEVLHVNK 255
Score = 33.1 bits (74), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 1028 AMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGR 1087
A+ S++ + C G + +WD Q + Q T G C+ + ++ L G D
Sbjct: 148 AISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG-ASCIDISNDGTKLWTGGLDNT 206
Query: 1088 IQAWGL 1093
+++W L
Sbjct: 207 VRSWDL 212
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 73/318 (22%), Positives = 131/318 (41%), Gaps = 44/318 (13%)
Query: 794 DSSADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQ 850
D + WN +L+ + + V +A D I S D T+K+W G L+Q
Sbjct: 242 DKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG---QLLQT 298
Query: 851 IREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSI 910
+ H+ +V G+A G+ + S S DKT ++W+ + + + H S+S+
Sbjct: 299 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGH-----------SSSV 347
Query: 911 --LCFIPQGAGI---------KVHLRNGK--TKLLNSSKYPKCLALV-QGKVYCGCQDGA 956
+ F P G I K+ RNG+ L S + +A G+ D
Sbjct: 348 WGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK 407
Query: 957 IQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNM 1016
++ G TGH + A + + +AS D VK+W+ N +
Sbjct: 408 TVKLWNRNGQLLQTLTGHSSSVWGV----AFSPDDQTIASAS---DDKTVKLWN-RNGQL 459
Query: 1017 VGSLPT-LSEVRAMVVS--SELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALD 1073
+ +L S VR + S + + TV++W++ Q+ ++TL TG S V+ +A
Sbjct: 460 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTL-TGHSSSVRGVAFS 517
Query: 1074 DNEEFLVIGTSDGRIQAW 1091
+ + + + D ++ W
Sbjct: 518 PDGQTIASASDDKTVKLW 535
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/323 (21%), Positives = 128/323 (39%), Gaps = 54/323 (16%)
Query: 794 DSSADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQ 850
D + WN +L+ + + V +A D I S D T+K+W G L+Q
Sbjct: 37 DKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG---QLLQT 93
Query: 851 IREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSI 910
+ H+ +V G+A G+ + S S DKT ++W+ + + + H S+S+
Sbjct: 94 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH-----------SSSV 142
Query: 911 --LCFIPQGAGI---------KVHLRNG---KTKLLNSSKYPKCLALVQGKVYCGCQDGA 956
+ F P G I K+ RNG +T +SS G+ D
Sbjct: 143 WGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDK 202
Query: 957 IQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVY-----TASTSLDGAAVKMWST 1011
++ G TGH + G+ + T +++ D VK+W+
Sbjct: 203 TVKLWNRNGQLLQTLTGHSSSV------------RGVAFSPDGQTIASASDDKTVKLWNR 250
Query: 1012 SN---YNMVGSLPTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQ 1068
+ + G +++ V A + + TV++W++ Q+ ++TL TG S V
Sbjct: 251 NGQLLQTLTGHSSSVNGV-AFRPDGQTIASASDDKTVKLWNRNGQL-LQTL-TGHSSSVW 307
Query: 1069 CMALDDNEEFLVIGTSDGRIQAW 1091
+A + + + + D ++ W
Sbjct: 308 GVAFSPDGQTIASASDDKTVKLW 330
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 19/145 (13%)
Query: 794 DSSADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQ 850
D + WN +L+ + + V +A D I S D T+K+W G L+Q
Sbjct: 447 DKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG---QLLQT 503
Query: 851 IREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSI 910
+ H+ +V G+A G+ + S S DKT ++W+ + + + H S+S+
Sbjct: 504 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH-----------SSSV 552
Query: 911 --LCFIPQGAGIKVHLRNGKTKLLN 933
+ F P G I + KL N
Sbjct: 553 WGVAFSPDGQTIASASSDKTVKLWN 577
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 54/259 (20%), Positives = 103/259 (39%), Gaps = 38/259 (14%)
Query: 850 QIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNS 909
++ H+ +V G+A G+ + S S DKT ++W+ + + + H S+S
Sbjct: 11 RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH-----------SSS 59
Query: 910 I--LCFIPQGAGI---------KVHLRNGK--TKLLNSSKYPKCLALV-QGKVYCGCQDG 955
+ + F P G I K+ RNG+ L S + +A G+ D
Sbjct: 60 VWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD 119
Query: 956 AIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSN-- 1013
++ G TGH + A + +AS D VK+W+ +
Sbjct: 120 KTVKLWNRNGQLLQTLTGHSSSVWGV----AFSPDGQTIASAS---DDKTVKLWNRNGQL 172
Query: 1014 -YNMVGSLPTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMAL 1072
+ G ++ V A + + TV++W++ Q+ ++TL TG S V+ +A
Sbjct: 173 LQTLTGHSSSVWGV-AFSPDGQTIASASDDKTVKLWNRNGQL-LQTL-TGHSSSVRGVAF 229
Query: 1073 DDNEEFLVIGTSDGRIQAW 1091
+ + + + D ++ W
Sbjct: 230 SPDGQTIASASDDKTVKLW 248
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s
Complex Obtained By Docking Homology Models Of The Rna
And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 76/313 (24%), Positives = 119/313 (38%), Gaps = 49/313 (15%)
Query: 812 ENGKVLSIAC---FRDKIFSGHSDGTIKVWT-GRGSILHLIQQ--IREHTKAVTGLAILQ 865
NG V IA F D I S D TI +W R + I Q +R H+ V+ + I
Sbjct: 14 HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS 73
Query: 866 SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLR 925
G+ SGS D T R+W + V KD + + F I R
Sbjct: 74 DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLS--------VAFSSDNRQIVSGSR 125
Query: 926 NGKTKLLNS-------------SKYPKCLALVQGK-----VYCGCQDGAIQEIDLATGTF 967
+ KL N+ S++ C+ V CG D ++ +LA
Sbjct: 126 DKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG-WDKLVKVWNLANCKL 184
Query: 968 ATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVR 1027
T GH L + + V AS DG A+ +W + + +L +
Sbjct: 185 KTNHIGHTGYL------NTVTVSPDGSLCASGGKDGQAM-LWDLNEGKHLYTLDGGDIIN 237
Query: 1028 AMVVSSELVYL-GCKGGTVEIWDQKRQIRIETLQT---GTSGKV---QC--MALDDNEEF 1078
A+ S +L G +++IWD + +I ++ L+ TS K QC +A + +
Sbjct: 238 ALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQT 297
Query: 1079 LVIGTSDGRIQAW 1091
L G +D ++ W
Sbjct: 298 LFAGYTDNLVRVW 310
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 9/104 (8%)
Query: 790 SNGHDSSADFWNHRELVHVDSSENGKVLSIACFRDKIF--SGHSDGTIKVWTGRGSIL-- 845
S G D A W+ E H+ + + G +++ CF + + +IK+W G I+
Sbjct: 209 SGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVD 268
Query: 846 HLIQQI-----REHTKAVTGLAILQSGEMLYSGSLDKTARVWSI 884
L Q++ + T LA G+ L++G D RVW +
Sbjct: 269 ELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 312
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution
Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A Resolution
Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A Resolution
Of 2.45 Angstrom
Length = 340
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 76/313 (24%), Positives = 119/313 (38%), Gaps = 49/313 (15%)
Query: 812 ENGKVLSIAC---FRDKIFSGHSDGTIKVWT-GRGSILHLIQQ--IREHTKAVTGLAILQ 865
NG V IA F D I S D TI +W R + I Q +R H+ V+ + I
Sbjct: 37 HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS 96
Query: 866 SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLR 925
G+ SGS D T R+W + V KD + + F I R
Sbjct: 97 DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLS--------VAFSSDNRQIVSGSR 148
Query: 926 NGKTKLLNS-------------SKYPKCLALVQGK-----VYCGCQDGAIQEIDLATGTF 967
+ KL N+ S++ C+ V CG D ++ +LA
Sbjct: 149 DKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG-WDKLVKVWNLANCKL 207
Query: 968 ATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVR 1027
T GH L + + V AS DG A+ +W + + +L +
Sbjct: 208 KTNHIGHTGYL------NTVTVSPDGSLCASGGKDGQAM-LWDLNEGKHLYTLDGGDIIN 260
Query: 1028 AMVVSSELVYL-GCKGGTVEIWDQKRQIRIETLQT---GTSGKV---QC--MALDDNEEF 1078
A+ S +L G +++IWD + +I ++ L+ TS K QC +A + +
Sbjct: 261 ALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQT 320
Query: 1079 LVIGTSDGRIQAW 1091
L G +D ++ W
Sbjct: 321 LFAGYTDNLVRVW 333
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 9/104 (8%)
Query: 790 SNGHDSSADFWNHRELVHVDSSENGKVLSIACFRDKIF--SGHSDGTIKVWTGRGSIL-- 845
S G D A W+ E H+ + + G +++ CF + + +IK+W G I+
Sbjct: 232 SGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVD 291
Query: 846 HLIQQI-----REHTKAVTGLAILQSGEMLYSGSLDKTARVWSI 884
L Q++ + T LA G+ L++G D RVW +
Sbjct: 292 ELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 335
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 25/136 (18%)
Query: 764 HMKDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACF 822
H KD++ +SP + +++S G D++ WN + E +H S ++C
Sbjct: 108 HTKDVLS-----VAFSP---DNRQIVSGGRDNALRVWNVKGECMHT-LSRGAHTDWVSCV 158
Query: 823 R-------DKIFSGHSDGTIKVW---TGRGSILHLIQQIREHTKAVTGLAILQSGEMLYS 872
R I SG D +KVW TGR L+ ++ HT VT + + G + S
Sbjct: 159 RFSPSLDAPVIVSGGWDNLVKVWDLATGR-----LVTDLKGHTNYVTSVTVSPDGSLCAS 213
Query: 873 GSLDKTARVWSIGNEE 888
D AR+W + E
Sbjct: 214 SDKDGVARLWDLTKGE 229
Score = 36.6 bits (83), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 58/268 (21%), Positives = 109/268 (40%), Gaps = 35/268 (13%)
Query: 849 QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKD--------- 899
+++ H+ V+ +A+ +G S S D + R+W++ N + + KD
Sbjct: 61 RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPD 120
Query: 900 --QIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKY-PKCLALVQGKVYCGCQDGA 956
QI + N++ + +G + R T ++ ++ P A V + G D
Sbjct: 121 NRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPV---IVSGGWDNL 177
Query: 957 IQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNM 1016
++ DLATG T GH N V ++ V AS+ DG A ++W +
Sbjct: 178 VKVWDLATGRLVTDLKGH------TNYVTSVTVSPDGSLCASSDKDGVA-RLWDLTKGEA 230
Query: 1017 VGSLPTLSEVRAMVVSSELVYLGC----KGGTVEIWD-QKRQIRIETLQTGTSGK---VQ 1068
+ + + + + S ++ C KG + I+D + + I +E K +
Sbjct: 231 LSEMAAGAPINQICFSPNRYWM-CAATEKG--IRIFDLENKDIIVELAPEHQGSKKIVPE 287
Query: 1069 C--MALDDNEEFLVIGTSDGRIQAWGLS 1094
C +A + L G +D I+ WG+S
Sbjct: 288 CVSIAWSADGSTLYSGYTDNVIRVWGVS 315
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 57/257 (22%), Positives = 111/257 (43%), Gaps = 29/257 (11%)
Query: 854 HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCF 913
HTKAV+ + +GE L S S DK ++W + + + K I ++A S+
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD---- 82
Query: 914 IPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKV-YCGCQDGAIQEIDLATGTFAT--- 969
+ + V + KT + KCL ++G Y C + Q + +G+F
Sbjct: 83 ----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 138
Query: 970 ---IQTGH--RKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSL---- 1020
++TG + L ++PV A+ + S+S DG ++W T++ + +L
Sbjct: 139 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDD 197
Query: 1021 -PTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALD---DNE 1076
P +S V+ + + + T+++WD + ++T TG + C+ +
Sbjct: 198 NPPVSFVK-FSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGG 255
Query: 1077 EFLVIGTSDGRIQAWGL 1093
+++V G+ D + W L
Sbjct: 256 KWIVSGSEDNLVYIWNL 272
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 57/257 (22%), Positives = 111/257 (43%), Gaps = 29/257 (11%)
Query: 854 HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCF 913
HTKAV+ + +GE L S S DK ++W + + + K I ++A S+
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD---- 79
Query: 914 IPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKV-YCGCQDGAIQEIDLATGTFAT--- 969
+ + V + KT + KCL ++G Y C + Q + +G+F
Sbjct: 80 ----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 970 ---IQTGH--RKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSL---- 1020
++TG + L ++PV A+ + S+S DG ++W T++ + +L
Sbjct: 136 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDD 194
Query: 1021 -PTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALD---DNE 1076
P +S V+ + + + T+++WD + ++T TG + C+ +
Sbjct: 195 NPPVSFVK-FSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGG 252
Query: 1077 EFLVIGTSDGRIQAWGL 1093
+++V G+ D + W L
Sbjct: 253 KWIVSGSEDNLVYIWNL 269
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 57/257 (22%), Positives = 111/257 (43%), Gaps = 29/257 (11%)
Query: 854 HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCF 913
HTKAV+ + +GE L S S DK ++W + + + K I ++A S+
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD---- 79
Query: 914 IPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKV-YCGCQDGAIQEIDLATGTFAT--- 969
+ + V + KT + KCL ++G Y C + Q + +G+F
Sbjct: 80 ----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 970 ---IQTGH--RKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSL---- 1020
++TG + L ++PV A+ + S+S DG ++W T++ + +L
Sbjct: 136 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDD 194
Query: 1021 -PTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALD---DNE 1076
P +S V+ + + + T+++WD + ++T TG + C+ +
Sbjct: 195 NPPVSFVK-FSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGG 252
Query: 1077 EFLVIGTSDGRIQAWGL 1093
+++V G+ D + W L
Sbjct: 253 KWIVSGSEDNLVYIWNL 269
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated
Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of Methylated
Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 57/257 (22%), Positives = 111/257 (43%), Gaps = 29/257 (11%)
Query: 854 HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCF 913
HTKAV+ + +GE L S S DK ++W + + + K I ++A S+
Sbjct: 18 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD---- 72
Query: 914 IPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKV-YCGCQDGAIQEIDLATGTFAT--- 969
+ + V + KT + KCL ++G Y C + Q + +G+F
Sbjct: 73 ----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 128
Query: 970 ---IQTGH--RKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSL---- 1020
++TG + L ++PV A+ + S+S DG ++W T++ + +L
Sbjct: 129 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDD 187
Query: 1021 -PTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALD---DNE 1076
P +S V+ + + + T+++WD + ++T TG + C+ +
Sbjct: 188 NPPVSFVK-FSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGG 245
Query: 1077 EFLVIGTSDGRIQAWGL 1093
+++V G+ D + W L
Sbjct: 246 KWIVSGSEDNLVYIWNL 262
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated
Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 57/257 (22%), Positives = 111/257 (43%), Gaps = 29/257 (11%)
Query: 854 HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCF 913
HTKAV+ + +GE L S S DK ++W + + + K I ++A S+
Sbjct: 21 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD---- 75
Query: 914 IPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKV-YCGCQDGAIQEIDLATGTFAT--- 969
+ + V + KT + KCL ++G Y C + Q + +G+F
Sbjct: 76 ----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 131
Query: 970 ---IQTGH--RKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSL---- 1020
++TG + L ++PV A+ + S+S DG ++W T++ + +L
Sbjct: 132 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDD 190
Query: 1021 -PTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALD---DNE 1076
P +S V+ + + + T+++WD + ++T TG + C+ +
Sbjct: 191 NPPVSFVK-FSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGG 248
Query: 1077 EFLVIGTSDGRIQAWGL 1093
+++V G+ D + W L
Sbjct: 249 KWIVSGSEDNLVYIWNL 265
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 57/257 (22%), Positives = 111/257 (43%), Gaps = 29/257 (11%)
Query: 854 HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCF 913
HTKAV+ + +GE L S S DK ++W + + + K I ++A S+
Sbjct: 39 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD---- 93
Query: 914 IPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKV-YCGCQDGAIQEIDLATGTFAT--- 969
+ + V + KT + KCL ++G Y C + Q + +G+F
Sbjct: 94 ----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 149
Query: 970 ---IQTGH--RKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSL---- 1020
++TG + L ++PV A+ + S+S DG ++W T++ + +L
Sbjct: 150 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDD 208
Query: 1021 -PTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALD---DNE 1076
P +S V+ + + + T+++WD + ++T TG + C+ +
Sbjct: 209 NPPVSFVK-FSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGG 266
Query: 1077 EFLVIGTSDGRIQAWGL 1093
+++V G+ D + W L
Sbjct: 267 KWIVSGSEDNLVYIWNL 283
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-5-
Nitrophenyl]benzamide
Length = 312
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 57/257 (22%), Positives = 111/257 (43%), Gaps = 29/257 (11%)
Query: 854 HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCF 913
HTKAV+ + +GE L S S DK ++W + + + K I ++A S+
Sbjct: 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD---- 76
Query: 914 IPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKV-YCGCQDGAIQEIDLATGTFAT--- 969
+ + V + KT + KCL ++G Y C + Q + +G+F
Sbjct: 77 ----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 132
Query: 970 ---IQTGH--RKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSL---- 1020
++TG + L ++PV A+ + S+S DG ++W T++ + +L
Sbjct: 133 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDD 191
Query: 1021 -PTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALD---DNE 1076
P +S V+ + + + T+++WD + ++T TG + C+ +
Sbjct: 192 NPPVSFVK-FSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGG 249
Query: 1077 EFLVIGTSDGRIQAWGL 1093
+++V G+ D + W L
Sbjct: 250 KWIVSGSEDNLVYIWNL 266
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone
Mark That Supports Euchromatin Maintenance
Length = 318
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 57/257 (22%), Positives = 111/257 (43%), Gaps = 29/257 (11%)
Query: 854 HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCF 913
HTKAV+ + +GE L S S DK ++W + + + K I ++A S+
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD---- 82
Query: 914 IPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKV-YCGCQDGAIQEIDLATGTFAT--- 969
+ + V + KT + KCL ++G Y C + Q + +G+F
Sbjct: 83 ----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 138
Query: 970 ---IQTGH--RKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSL---- 1020
++TG + L ++PV A+ + S+S DG ++W T++ + +L
Sbjct: 139 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDD 197
Query: 1021 -PTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALD---DNE 1076
P +S V+ + + + T+++WD + ++T TG + C+ +
Sbjct: 198 NPPVSFVK-FSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGG 255
Query: 1077 EFLVIGTSDGRIQAWGL 1093
+++V G+ D + W L
Sbjct: 256 KWIVSGSEDNLVYIWNL 272
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 57/257 (22%), Positives = 111/257 (43%), Gaps = 29/257 (11%)
Query: 854 HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCF 913
HTKAV+ + +GE L S S DK ++W + + + K I ++A S+
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD---- 79
Query: 914 IPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKV-YCGCQDGAIQEIDLATGTFAT--- 969
+ + V + KT + KCL ++G Y C + Q + +G+F
Sbjct: 80 ----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 970 ---IQTGH--RKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSL---- 1020
++TG + L ++PV A+ + S+S DG ++W T++ + +L
Sbjct: 136 IWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDD 194
Query: 1021 -PTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALD---DNE 1076
P +S V+ + + + T+++WD + ++T TG + C+ +
Sbjct: 195 NPPVSFVK-FSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGG 252
Query: 1077 EFLVIGTSDGRIQAWGL 1093
+++V G+ D + W L
Sbjct: 253 KWIVSGSEDNMVYIWNL 269
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 57/257 (22%), Positives = 111/257 (43%), Gaps = 29/257 (11%)
Query: 854 HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCF 913
HTKAV+ + +GE L S S DK ++W + + + K I ++A S+
Sbjct: 27 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD---- 81
Query: 914 IPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKV-YCGCQDGAIQEIDLATGTFAT--- 969
+ + V + KT + KCL ++G Y C + Q + +G+F
Sbjct: 82 ----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 137
Query: 970 ---IQTGH--RKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSL---- 1020
++TG + L ++PV A+ + S+S DG ++W T++ + +L
Sbjct: 138 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDD 196
Query: 1021 -PTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALD---DNE 1076
P +S V+ + + + T+++WD + ++T TG + C+ +
Sbjct: 197 NPPVSFVK-FSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGG 254
Query: 1077 EFLVIGTSDGRIQAWGL 1093
+++V G+ D + W L
Sbjct: 255 KWIVSGSEDNLVYIWNL 271
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 40.8 bits (94), Expect = 0.005, Method: Composition-based stats.
Identities = 57/257 (22%), Positives = 111/257 (43%), Gaps = 29/257 (11%)
Query: 854 HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCF 913
HTKAV+ + +GE L S S DK ++W + + + K I ++A S+
Sbjct: 23 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD---- 77
Query: 914 IPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKV-YCGCQDGAIQEIDLATGTFAT--- 969
+ + V + KT + KCL ++G Y C + Q + +G+F
Sbjct: 78 ----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 133
Query: 970 ---IQTGH--RKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSL---- 1020
++TG + L ++PV A+ + S+S DG ++W T++ + +L
Sbjct: 134 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDD 192
Query: 1021 -PTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALD---DNE 1076
P +S V+ + + + T+++WD + ++T TG + C+ +
Sbjct: 193 NPPVSFVK-FSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGG 250
Query: 1077 EFLVIGTSDGRIQAWGL 1093
+++V G+ D + W L
Sbjct: 251 KWIVSGSEDNLVYIWNL 267
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 40.8 bits (94), Expect = 0.005, Method: Composition-based stats.
Identities = 57/257 (22%), Positives = 111/257 (43%), Gaps = 29/257 (11%)
Query: 854 HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCF 913
HTKAV+ + +GE L S S DK ++W + + + K I ++A S+
Sbjct: 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD---- 76
Query: 914 IPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKV-YCGCQDGAIQEIDLATGTFAT--- 969
+ + V + KT + KCL ++G Y C + Q + +G+F
Sbjct: 77 ----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 132
Query: 970 ---IQTGH--RKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSL---- 1020
++TG + L ++PV A+ + S+S DG ++W T++ + +L
Sbjct: 133 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDD 191
Query: 1021 -PTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALD---DNE 1076
P +S V+ + + + T+++WD + ++T TG + C+ +
Sbjct: 192 NPPVSFVK-FSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGG 249
Query: 1077 EFLVIGTSDGRIQAWGL 1093
+++V G+ D + W L
Sbjct: 250 KWIVSGSEDNLVYIWNL 266
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 40.8 bits (94), Expect = 0.005, Method: Composition-based stats.
Identities = 57/257 (22%), Positives = 111/257 (43%), Gaps = 29/257 (11%)
Query: 854 HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCF 913
HTKAV+ + +GE L S S DK ++W + + + K I ++A S+
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD---- 82
Query: 914 IPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKV-YCGCQDGAIQEIDLATGTFAT--- 969
+ + V + KT + KCL ++G Y C + Q + +G+F
Sbjct: 83 ----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 138
Query: 970 ---IQTGH--RKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSL---- 1020
++TG + L ++PV A+ + S+S DG ++W T++ + +L
Sbjct: 139 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDD 197
Query: 1021 -PTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALD---DNE 1076
P +S V+ + + + T+++WD + ++T TG + C+ +
Sbjct: 198 NPPVSFVK-FSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGG 255
Query: 1077 EFLVIGTSDGRIQAWGL 1093
+++V G+ D + W L
Sbjct: 256 KWIVSGSEDNLVYIWNL 272
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3 Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3 Peptide
Length = 334
Score = 40.4 bits (93), Expect = 0.006, Method: Composition-based stats.
Identities = 57/257 (22%), Positives = 111/257 (43%), Gaps = 29/257 (11%)
Query: 854 HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCF 913
HTKAV+ + +GE L S S DK ++W + + + K I ++A S+
Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD---- 98
Query: 914 IPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKV-YCGCQDGAIQEIDLATGTFAT--- 969
+ + V + KT + KCL ++G Y C + Q + +G+F
Sbjct: 99 ----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 154
Query: 970 ---IQTGH--RKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSL---- 1020
++TG + L ++PV A+ + S+S DG ++W T++ + +L
Sbjct: 155 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDD 213
Query: 1021 -PTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALD---DNE 1076
P +S V+ + + + T+++WD + ++T TG + C+ +
Sbjct: 214 NPPVSFVK-FSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGG 271
Query: 1077 EFLVIGTSDGRIQAWGL 1093
+++V G+ D + W L
Sbjct: 272 KWIVSGSEDNLVYIWNL 288
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 40.4 bits (93), Expect = 0.006, Method: Composition-based stats.
Identities = 57/257 (22%), Positives = 111/257 (43%), Gaps = 29/257 (11%)
Query: 854 HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCF 913
HTKAV+ + +GE L S S DK ++W + + + K I ++A S+
Sbjct: 46 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD---- 100
Query: 914 IPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKV-YCGCQDGAIQEIDLATGTFAT--- 969
+ + V + KT + KCL ++G Y C + Q + +G+F
Sbjct: 101 ----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 156
Query: 970 ---IQTGH--RKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSL---- 1020
++TG + L ++PV A+ + S+S DG ++W T++ + +L
Sbjct: 157 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDD 215
Query: 1021 -PTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALD---DNE 1076
P +S V+ + + + T+++WD + ++T TG + C+ +
Sbjct: 216 NPPVSFVK-FSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGG 273
Query: 1077 EFLVIGTSDGRIQAWGL 1093
+++V G+ D + W L
Sbjct: 274 KWIVSGSEDNLVYIWNL 290
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A
5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 1020 LPTLSEVRAMVVSSELVYLGCKGGTVEIWDQ---KRQIRIETLQTGTSGKVQCMALDDNE 1076
LP ++ V A +S L++ G G +WD + + + TLQ G++ C+ L +
Sbjct: 298 LPIVTSV-AFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDG 356
Query: 1077 EFLVIGTSDGRIQAWGLS 1094
L G+ D ++ W S
Sbjct: 357 SALCTGSWDKNLKIWAFS 374
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 826 IFSGHSDGTIKVWTGRGS--ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWS 883
+F+G+S+G VW + +L+L H ++ L + G L +GS DK ++W+
Sbjct: 313 LFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWA 372
Query: 884 I-GNEEI 889
G+ +I
Sbjct: 373 FSGHRKI 379
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 40.0 bits (92), Expect = 0.007, Method: Composition-based stats.
Identities = 56/257 (21%), Positives = 111/257 (43%), Gaps = 29/257 (11%)
Query: 854 HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCF 913
HTKAV+ + +GE L + S DK ++W + + + K I ++A S+
Sbjct: 25 HTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD---- 79
Query: 914 IPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKV-YCGCQDGAIQEIDLATGTFAT--- 969
+ + V + KT + KCL ++G Y C + Q + +G+F
Sbjct: 80 ----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 970 ---IQTGH--RKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSL---- 1020
++TG + L ++PV A+ + S+S DG ++W T++ + +L
Sbjct: 136 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDD 194
Query: 1021 -PTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALD---DNE 1076
P +S V+ + + + T+++WD + ++T TG + C+ +
Sbjct: 195 NPPVSFVK-FSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGG 252
Query: 1077 EFLVIGTSDGRIQAWGL 1093
+++V G+ D + W L
Sbjct: 253 KWIVSGSEDNLVYIWNL 269
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 81/214 (37%), Gaps = 39/214 (18%)
Query: 826 IFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIG 885
+ +G D +KVW R L L + H V + I + + S SLD R+W +
Sbjct: 51 VVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE 110
Query: 886 NEEIHCVQVHDIKDQIQNL---AVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLA 942
N + QI+++ V L F P + GK + K +
Sbjct: 111 NGK-----------QIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYS 159
Query: 943 L-VQGK-------------VYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQ 988
L +GK + G DG I D+ATG GH A P+ +L
Sbjct: 160 LDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGH------AMPIRSLT 213
Query: 989 V--HNGLVYTASTSLDGAAVKMWSTSNYNMVGSL 1020
+ L+ TAS D +K++ + N+ G+L
Sbjct: 214 FSPDSQLLVTAS---DDGYIKIYDVQHANLAGTL 244
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 7/101 (6%)
Query: 821 CFR-DKIF--SGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDK 877
CF D F +G D I++W + +I Q H + + L SG+ L SGS D+
Sbjct: 130 CFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ--GHEQDIYSLDYFPSGDKLVSGSGDR 187
Query: 878 TARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGA 918
T R+W + + C I+D + +AVS +I G+
Sbjct: 188 TVRIWDLRTGQ--CSLTLSIEDGVTTVAVSPGDGKYIAAGS 226
Score = 37.7 bits (86), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 802 HRELVHVDSSENGKVLSIACFR--DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVT 859
+R++V + + S+ F DK+ SG D T+++W R L I + VT
Sbjct: 154 NRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED---GVT 210
Query: 860 GLAILQS-GEMLYSGSLDKTARVW 882
+A+ G+ + +GSLD+ RVW
Sbjct: 211 TVAVSPGDGKYIAAGSLDRAVRVW 234
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 826 IFSGHSDGTIKVWTGR-GSILHLIQQIRE----HTKAVTGLAILQSGEMLYSGSLDKTAR 880
I +G D ++VW G ++ + E H +V + + G+ + SGSLD++ +
Sbjct: 222 IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK 281
Query: 881 VWSIGN 886
+W++ N
Sbjct: 282 LWNLQN 287
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 38.5 bits (88), Expect = 0.022, Method: Composition-based stats.
Identities = 56/257 (21%), Positives = 110/257 (42%), Gaps = 29/257 (11%)
Query: 854 HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCF 913
HTKAV+ + +GE L S S DK ++W + + + K I ++A S+
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD---- 79
Query: 914 IPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKV-YCGCQDGAIQEIDLATGTFAT--- 969
+ + V + KT + KCL ++G Y C + Q + +G+F
Sbjct: 80 ----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 970 ---IQTGH--RKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSL---- 1020
++TG + L ++PV A+ + S+S DG ++W T++ + +L
Sbjct: 136 IWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDD 194
Query: 1021 -PTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALD---DNE 1076
P +S V+ + + + +++WD + ++T TG + C+ +
Sbjct: 195 NPPVSFVK-FSPNGKYILAATLDNDLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGG 252
Query: 1077 EFLVIGTSDGRIQAWGL 1093
+++V G+ D + W L
Sbjct: 253 KWIVSGSEDNMVYIWNL 269
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 96/246 (39%), Gaps = 40/246 (16%)
Query: 813 NGKVLSIACFRDKIFSGHSDGTIKVW---TGRGSILHLIQQIREHTKAVTGLAILQSGEM 869
N +SI D I S D TIK+W TG + ++ H + V + Q G +
Sbjct: 194 NVSSVSIMPNGDHIVSASRDKTIKMWEVQTG-----YCVKTFTGHREWVRMVRPNQDGTL 248
Query: 870 LYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKT 929
+ S S D+T RVW + +E K +++ + + P+ + + G
Sbjct: 249 IASCSNDQTVRVWVVATKE--------CKAELREHRHVVECISWAPESSYSSISEATGSE 300
Query: 930 KLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQV 989
+ P L+ G +D I+ D++TG L+G N V +
Sbjct: 301 TKKSGKPGPFLLS--------GSRDKTIKMWDVSTGMCLMT------LVGHDNWVRGVLF 346
Query: 990 HNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVS------SELVYLGCKGG 1043
H+G + S + D +++W +Y + TL+ V S + V G
Sbjct: 347 HSGGKFILSCA-DDKTLRVW---DYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQ 402
Query: 1044 TVEIWD 1049
TV++W+
Sbjct: 403 TVKVWE 408
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 826 IFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSI- 884
+ S D TIKVW + ++ HT +V ++ SG++L S S D T ++W
Sbjct: 123 MVSASEDATIKVWDYETGDFE--RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180
Query: 885 GNEEIHCVQVHD 896
G E I + HD
Sbjct: 181 GFECIRTMHGHD 192
>pdb|2OXQ|C Chain C, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|D Chain D, Structure Of The Ubch5 :chip U-Box Complex
Length = 80
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 163 DFVC-PITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLK 221
D++C I+ + +P +G TY+R+ I+E ++R P+TR L+ +L N +K
Sbjct: 12 DYLCGKISFELMAEPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQL-IPNLAMK 70
Query: 222 RLIASWQEQN 231
+I ++ ++N
Sbjct: 71 EVIDAFIQEN 80
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 37.0 bits (84), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 75/357 (21%), Positives = 134/357 (37%), Gaps = 67/357 (18%)
Query: 755 PQGLRDINIHMKDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENG 814
P+G +N+ + L + + E + +L N W + + V ++ G
Sbjct: 68 PKGFNSLNLKLSQKYPKLSQQDRLRLSFLENIFILKN--------WYNPKFVPQRTTLRG 119
Query: 815 KVLS-IAC--FRDK-IFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEML 870
+ S I C F D + +G D I+V+ + Q+ H V L G +L
Sbjct: 120 HMTSVITCLQFEDNYVITGADDKMIRVYDSINK--KFLLQLSGHDGGVWALKYAHGG-IL 176
Query: 871 YSGSLDKTARVWSIG-----------NEEIHCVQVHDIKD--QIQNLAVSNSILCF-IPQ 916
SGS D+T RVW I N + C+ + + K+ I + N++ + +P+
Sbjct: 177 VSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK 236
Query: 917 GAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQT--GH 974
+ + H YP + Y + + G A+++T GH
Sbjct: 237 ESSVPDHGE--------EHDYPLVFHTPEENPYF---------VGVLRGHMASVRTVSGH 279
Query: 975 RKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE 1034
++ + + L V + L G +++ST R +S+
Sbjct: 280 GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYST----------IYDHERKRCISAS 329
Query: 1035 LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAW 1091
+ T+ IWD + + TLQ G + V + L D +FLV +DG I+ W
Sbjct: 330 M------DTTIRIWDLENGELMYTLQ-GHTALVGLLRLSD--KFLVSAAADGSIRGW 377
>pdb|2F42|A Chain A, Dimerization And U-Box Domains Of Zebrafish C-Terminal Of
Hsp70 Interacting Protein
Length = 179
Score = 36.2 bits (82), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 163 DFVC-PITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLK 221
D++C I+ + +P +G TY+R+ I+E ++R P+TR L+ +L N +K
Sbjct: 105 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLI-PNLAMK 163
Query: 222 RLIASWQEQN 231
+I ++ ++N
Sbjct: 164 EVIDAFIQEN 173
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 36.2 bits (82), Expect = 0.10, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 41/108 (37%), Gaps = 18/108 (16%)
Query: 788 VLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHL 847
VLS GH R + V S G L+ A F D T +W
Sbjct: 55 VLSEGH--------QRTVRKVAWSPCGNYLASASF---------DATTCIWKKNQDDFEC 97
Query: 848 IQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNE-EIHCVQV 894
+ + H V +A SG +L + S DK+ VW + E E CV V
Sbjct: 98 VTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSV 145
>pdb|2C2V|S Chain S, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|T Chain T, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|U Chain U, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|V Chain V, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 78
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 163 DFVC-PITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLK 221
D++C I+ + +P +G TY+R+ I+E ++R P+TR L+ +L N +K
Sbjct: 4 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQL-IPNLAMK 62
Query: 222 RLIASWQEQN 231
+I ++ +N
Sbjct: 63 EVIDAFISEN 72
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 163 DFVC-PITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLK 221
D++C I+ + +P +G TY+R+ I+E ++R P+TR L+ +L N +K
Sbjct: 207 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQL-IPNLAMK 265
Query: 222 RLIASWQEQN 231
+I ++ +N
Sbjct: 266 EVIDAFISEN 275
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 826 IFSGHSDGTIKVW-TGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWS 883
+F+G++D TI VW +GS + ++ H V+ L + G SGS D T RVW+
Sbjct: 299 LFAGYNDYTINVWDVLKGSRVSILFG---HENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 34.7 bits (78), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 18/106 (16%)
Query: 788 VLSNGHDSSADFWNHRE------LVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVW--- 838
++S+ DS WN + H ++ ++ ++L + ++ S DGT+KVW
Sbjct: 1018 LISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDS----RLLSWSFDGTVKVWNVI 1073
Query: 839 TGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSI 884
TGR + + H V AI S S DKTA++WS
Sbjct: 1074 TGR-----IERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSF 1114
Score = 33.1 bits (74), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 39/183 (21%), Positives = 74/183 (40%), Gaps = 27/183 (14%)
Query: 854 HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCF 913
H KAV + G+ L S S D +VW+ + +Q H ++ +++
Sbjct: 1002 HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAH--QETVKDFR-------- 1051
Query: 914 IPQGAGIKVHLRNGKTKLLN--SSKYPKCLALVQGKVY-CGCQDGAIQEIDLATGTFATI 970
+ Q + + +G K+ N + + + QG V C A + + A I
Sbjct: 1052 LLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKI 1111
Query: 971 QTGHRKLLGKANPVHALQVHNGLVYTASTSLDG---------AAVKMWSTSNYNMVGSLP 1021
+ +P+H L+ HNG V ++ SLDG +++W+ S+ ++ S
Sbjct: 1112 WS-----FDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCA 1166
Query: 1022 TLS 1024
+S
Sbjct: 1167 PIS 1169
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 94/255 (36%), Gaps = 24/255 (9%)
Query: 848 IQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWS----IGNEEIHCVQVHDI---KDQ 900
+ R H V G+ G + S D+T RVW N I Q D+ +++
Sbjct: 875 VADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENE 934
Query: 901 IQNLAVSN-SILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQE 959
LAV N L I G +L + CL+ V G +DGAI+
Sbjct: 935 TMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCC-------CLSPHLEYVAFGDEDGAIKI 987
Query: 960 IDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMV-G 1018
I+L + GH+K + H +G +S+ V W T +Y +
Sbjct: 988 IELPNNRVFSSGVGHKKAVR-----HIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQA 1042
Query: 1019 SLPTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEF 1078
T+ + R + S L + GTV++W+ RIE T G V A+ +
Sbjct: 1043 HQETVKDFRLLQDSRLLSW--SFDGTVKVWNVITG-RIERDFTCHQGTVLSCAISSDATK 1099
Query: 1079 LVIGTSDGRIQAWGL 1093
++D + W
Sbjct: 1100 FSSTSADKTAKIWSF 1114
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 34.7 bits (78), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 18/106 (16%)
Query: 788 VLSNGHDSSADFWNHRE------LVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVW--- 838
++S+ DS WN + H ++ ++ ++L + ++ S DGT+KVW
Sbjct: 1025 LISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDS----RLLSWSFDGTVKVWNVI 1080
Query: 839 TGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSI 884
TGR + + H V AI S S DKTA++WS
Sbjct: 1081 TGR-----IERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSF 1121
Score = 33.1 bits (74), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 39/183 (21%), Positives = 74/183 (40%), Gaps = 27/183 (14%)
Query: 854 HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCF 913
H KAV + G+ L S S D +VW+ + +Q H ++ +++
Sbjct: 1009 HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAH--QETVKDFR-------- 1058
Query: 914 IPQGAGIKVHLRNGKTKLLN--SSKYPKCLALVQGKVY-CGCQDGAIQEIDLATGTFATI 970
+ Q + + +G K+ N + + + QG V C A + + A I
Sbjct: 1059 LLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKI 1118
Query: 971 QTGHRKLLGKANPVHALQVHNGLVYTASTSLDG---------AAVKMWSTSNYNMVGSLP 1021
+ +P+H L+ HNG V ++ SLDG +++W+ S+ ++ S
Sbjct: 1119 WS-----FDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCA 1173
Query: 1022 TLS 1024
+S
Sbjct: 1174 PIS 1176
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 94/255 (36%), Gaps = 24/255 (9%)
Query: 848 IQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWS----IGNEEIHCVQVHDI---KDQ 900
+ R H V G+ G + S D+T RVW N I Q D+ +++
Sbjct: 882 VADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENE 941
Query: 901 IQNLAVSN-SILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQE 959
LAV N L I G +L + CL+ V G +DGAI+
Sbjct: 942 TMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCC-------CLSPHLEYVAFGDEDGAIKI 994
Query: 960 IDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMV-G 1018
I+L + GH+K + H +G +S+ V W T +Y +
Sbjct: 995 IELPNNRVFSSGVGHKKAVR-----HIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQA 1049
Query: 1019 SLPTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEF 1078
T+ + R + S L + GTV++W+ RIE T G V A+ +
Sbjct: 1050 HQETVKDFRLLQDSRLLSW--SFDGTVKVWNVITG-RIERDFTCHQGTVLSCAISSDATK 1106
Query: 1079 LVIGTSDGRIQAWGL 1093
++D + W
Sbjct: 1107 FSSTSADKTAKIWSF 1121
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 34.3 bits (77), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 80/358 (22%), Positives = 130/358 (36%), Gaps = 69/358 (19%)
Query: 755 PQGLRDINIHMKDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENG 814
P+G +N+ + L + + E + +L N W + + V ++ G
Sbjct: 68 PKGFNSLNLKLSQKYPKLSQQDRLRLSFLENIFILKN--------WYNPKFVPQRTTLRG 119
Query: 815 KVLS-IAC--FRDK-IFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEML 870
S I C F D + +G D I+V+ + Q+ H V L G +L
Sbjct: 120 HXTSVITCLQFEDNYVITGADDKXIRVYDSINK--KFLLQLSGHDGGVWALKYAHGG-IL 176
Query: 871 YSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCF-IPQGAGIKVHLRNGKT 929
SGS D+T RVW I ++ C V + ++++ C I + IK + +
Sbjct: 177 VSGSTDRTVRVWDI--KKGCCTHVFE--------GHNSTVRCLDIVEYKNIKYIVTGSRD 226
Query: 930 KLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGT------FATIQTGH----RKLLG 979
L+ K PK ++ G + L T F + GH R + G
Sbjct: 227 NTLHVWKLPKESSV--------PDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSG 278
Query: 980 KANPVHALQVHNGLVYTASTS------LDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSS 1033
N V + N L+ L G +++ST R +S+
Sbjct: 279 HGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYST----------IYDHERKRCISA 328
Query: 1034 ELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAW 1091
T+ IWD + TLQ G + V + L D +FLV +DG I+ W
Sbjct: 329 S------XDTTIRIWDLENGELXYTLQ-GHTALVGLLRLSD--KFLVSAAADGSIRGW 377
>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
Length = 115
Score = 33.9 bits (76), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 161 PKDFV-------CPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSS 210
PKD + C I I +PVTL T + Q +E+ + CP R+++SS
Sbjct: 6 PKDAIPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 33.1 bits (74), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 86/201 (42%), Gaps = 28/201 (13%)
Query: 864 LQSGEMLYSGSLDKTARVWSIG----NEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAG 919
Q G ++ SGS DKTA+VW G N + H V D K VS S F+ A
Sbjct: 112 FQDG-VVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAK------VVSFSENKFLTASAD 164
Query: 920 IKVHL-RNGKTKLLNSSKYP---KCLALVQGKVYCGC-QDGAIQEIDLATGTFATIQTGH 974
+ L +N K S + + LA+V + C DG I+ +D TG GH
Sbjct: 165 KTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEGH 224
Query: 975 RKLLGKANPVHALQ-VHNGLVYTASTSLDGAAVKMWSTSNYNM--VGSLPTLSEVRAMVV 1031
V+ ++ + NG + + + V++WS N ++ V +LP +S
Sbjct: 225 ESF------VYCIKLLPNGDIVSCG---EDRTVRIWSKENGSLKQVITLPAISIWSVDCX 275
Query: 1032 SSELVYLGCKGGTVEIWDQKR 1052
S+ + +G V I+ Q++
Sbjct: 276 SNGDIIVGSSDNLVRIFSQEK 296
Score = 30.0 bits (66), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Query: 781 LAFEMVKVLSNGHDSSADFWNHRELV-----HVDSSENGKVLSIACFRDKIFSGHSDGTI 835
L+F+ V+S D +A W LV H S + KV+S + +K + +D TI
Sbjct: 110 LSFQDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFS--ENKFLTASADKTI 167
Query: 836 KVWTGRGSILHLIQQIREHTKAVTGLAILQSGEML 870
K+W ++ I H V LA++ G +
Sbjct: 168 KLWQ-NDKVIKTFSGI--HNDVVRHLAVVDDGHFI 199
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 33.1 bits (74), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 163 DFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSS 210
+ C I + F + VTL ++ I EW++R CPI R+ + S
Sbjct: 53 ELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRK-IECPICRKDIKS 99
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 33.1 bits (74), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 60/139 (43%), Gaps = 14/139 (10%)
Query: 787 KVLSNGHDSSADFWN----HRELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTG 840
++LS D + WN ++E V G VLS D K S +D T K+W+
Sbjct: 1063 RLLSWSFDGTVKVWNIITGNKEKDFV--CHQGTVLSCDISHDATKFSSTSADKTAKIWSF 1120
Query: 841 RGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE-IH-CVQVHDIK 898
+L + ++R H V A +L +G + R+W++ N E +H C + +
Sbjct: 1121 --DLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEG 1178
Query: 899 DQIQNLAVSNSILCFIPQG 917
V++ LCF P G
Sbjct: 1179 AATHGGWVTD--LCFSPDG 1195
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 33.1 bits (74), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 163 DFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSS 210
+ C I + F + VTL ++ I EW++R CPI R+ + S
Sbjct: 53 ELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRK-IECPICRKDIKS 99
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 829 GHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSI 884
G ++G IKV ++ I Q H +T L SGE L S S D ++WS+
Sbjct: 112 GTTEGDIKVLDSNFNLQREIDQ--AHVSEITKLKFFPSGEALISSSQDMQLKIWSV 165
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 854 HTKAVTGLAILQSGEMLYSGSLDKTARVWSIG 885
H VT +AI+ G + S SLD T R+W G
Sbjct: 177 HRATVTDIAIIDRGRNVLSASLDGTIRLWECG 208
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 163 DFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSS 210
+ C I + F + VTL ++ I EW++R CPI R+ + S
Sbjct: 64 ELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRK-IECPICRKDIKS 110
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 816 VLSIACFRDK--IFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAI-LQSGEMLYS 872
+ SIA K + SG D T+K+W + L Q H V +A + S
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENN-WALEQTFEGHEHFVMCVAFNPKDPSTFAS 158
Query: 873 GSLDKTARVWSIG 885
G LD+T +VWS+G
Sbjct: 159 GCLDRTVKVWSLG 171
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 816 VLSIACFRDK--IFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAI-LQSGEMLYS 872
+ SIA K + SG D T+K+W + L Q H V +A + S
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENN-WALEQTFEGHEHFVMCVAFNPKDPSTFAS 158
Query: 873 GSLDKTARVWSIG 885
G LD+T +VWS+G
Sbjct: 159 GCLDRTVKVWSLG 171
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 829 GHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSI 884
G ++G IKV ++ I Q H +T L SGE L S S D ++WS+
Sbjct: 115 GTTEGDIKVLDSNFNLQREIDQ--AHVSEITKLKFFPSGEALISSSQDMQLKIWSV 168
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 854 HTKAVTGLAILQSGEMLYSGSLDKTARVWSIG 885
H VT +AI+ G + S SLD T R+W G
Sbjct: 180 HRATVTDIAIIDRGRNVLSASLDGTIRLWECG 211
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 11/96 (11%)
Query: 801 NHRELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTG--RGSILHLIQQIREHTKAV 858
+ E+ V S +G L+ C RDK ++ +W G I ++EH++ V
Sbjct: 106 HENEVKGVAWSNDGYYLA-TCSRDK--------SVWIWETDESGEEYECISVLQEHSQDV 156
Query: 859 TGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQV 894
+ S +L S S D T R+W +++ CV V
Sbjct: 157 KHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAV 192
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 816 VLSIACFRDK--IFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAI-LQSGEMLYS 872
+ SIA K + SG D T+K+W + L Q H V +A + S
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENN-WALEQTFEGHEHFVMCVAFNPKDPSTFAS 158
Query: 873 GSLDKTARVWSIG 885
G LD+T +VWS+G
Sbjct: 159 GCLDRTVKVWSLG 171
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 816 VLSIACFRDK--IFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAI-LQSGEMLYS 872
+ SIA K + SG D T+K+W + L Q H V +A + S
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENN-WALEQTFEGHEHFVMCVAFNPKDPSTFAS 158
Query: 873 GSLDKTARVWSIG 885
G LD+T +VWS+G
Sbjct: 159 GCLDRTVKVWSLG 171
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 1043 GTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQ 1089
G VEIW+ + Q+ + ++Q T V+ + ++++G+ D RI+
Sbjct: 35 GRVEIWNYETQVEVRSIQV-TETPVRAGKFIARKNWIIVGSDDFRIR 80
>pdb|2V6M|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V7P|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
Length = 310
Score = 31.6 bits (70), Expect = 2.9, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 35 ELLDENCRVFASYFKQVLENSNDSGLIIVTPPSVVLRKIE-KVGGL 79
+LLD N +VFA +VLE + ++ L++ T P V+ ++ ++ GL
Sbjct: 87 QLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQVAYRLSGL 132
>pdb|2XXB|A Chain A, Penta-Mutant Of Thermus Thermophilus Lactate
Dehydrogenase, Complex With Amp
pdb|2XXB|B Chain B, Penta-Mutant Of Thermus Thermophilus Lactate
Dehydrogenase, Complex With Amp
pdb|2XXJ|A Chain A, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|B Chain B, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|C Chain C, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|D Chain D, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|3ZZN|A Chain A, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|B Chain B, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|C Chain C, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|D Chain D, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
Length = 310
Score = 31.6 bits (70), Expect = 2.9, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 25/39 (64%)
Query: 35 ELLDENCRVFASYFKQVLENSNDSGLIIVTPPSVVLRKI 73
+LLD N +VFA +VLE + ++ L++ T P V+ ++
Sbjct: 87 QLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQV 125
>pdb|4A73|A Chain A, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|B Chain B, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|C Chain C, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|D Chain D, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
Length = 310
Score = 31.6 bits (70), Expect = 2.9, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 35 ELLDENCRVFASYFKQVLENSNDSGLIIVTPPSVVLRKIE-KVGGL 79
+LLD N +VFA +VLE + ++ L++ T P V+ ++ ++ GL
Sbjct: 87 QLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQVAYRLSGL 132
>pdb|3IYU|X Chain X, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|Y Chain Y, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|Z Chain Z, Atomic Model Of An Infectious Rotavirus Particle
Length = 776
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 969 TIQTGHRKLLG--KANP-VHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMV 1017
T Q G G ++ P ++A+ HNG +YT + K +ST+NY+ V
Sbjct: 146 TTQNGSYSQYGPLQSTPKLYAVMKHNGKIYTYNGETPNVTTKYYSTTNYDSV 197
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/71 (21%), Positives = 33/71 (46%)
Query: 826 IFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIG 885
+ +G ++ W + S + + + HT V + G +++ S DKTA++W +
Sbjct: 57 LIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLS 116
Query: 886 NEEIHCVQVHD 896
+ + + HD
Sbjct: 117 SNQAIQIAQHD 127
>pdb|1LLW|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Complex With
2-Oxoglutarate
pdb|1LLZ|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Reduced Enzyme
pdb|1LM1|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Native Enzyme
pdb|1OFD|A Chain A, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate At 2.0 Angstrom Resolution
pdb|1OFD|B Chain B, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate At 2.0 Angstrom Resolution
pdb|1OFE|A Chain A, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate And L-Don At 2.45 Angstrom Resolution
pdb|1OFE|B Chain B, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate And L-Don At 2.45 Angstrom Resolution
Length = 1520
Score = 30.4 bits (67), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 575 IYREEAIDTLISCLR-----NSDYPAAQLAAAKTIVSLQGRFTTSGKSL 618
+YR+ D ++ LR N+D PA L +++ S+ RF T G SL
Sbjct: 829 LYRQYLKDRPVTALRDLLDFNADQPAISLEEVESVESIVKRFCTGGMSL 877
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 30.4 bits (67), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 827 FSGHSDGTIKVW---TGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWS 883
S D T+++W TG Q+ H V + I + M+ SGS DKT +VW+
Sbjct: 81 LSASWDKTLRLWDVATGE-----TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWT 135
Query: 884 IGNEEIHCVQVHD 896
I + + + H+
Sbjct: 136 IKGQCLATLLGHN 148
Score = 30.0 bits (66), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 61/310 (19%), Positives = 114/310 (36%), Gaps = 42/310 (13%)
Query: 812 ENGKVLSIACFRDK---IFSGHSDGTIKVWTGRGSILHL---IQQIREHTKAVTGLAILQ 865
NG V S+A + + S D T+ W G ++ + H+ V +
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 75
Query: 866 SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQ-NLAVSNSILCFIPQGAGIKVHL 924
G S S DKT R+W + E + V D + ++ S++ + IKV
Sbjct: 76 DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWT 135
Query: 925 RNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPV 984
G +CLA + G Q + + I G+ K++ KA +
Sbjct: 136 IKG-----------QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMV-KAWNL 183
Query: 985 HALQV------HNGLVYTASTSLDG---------AAVKMWSTSNYNMVGSLPTLSEVRAM 1029
+ Q+ HN + T + S DG + +W+ + + +L EV ++
Sbjct: 184 NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSL 243
Query: 1030 VVSSELVYLGCKGGT-VEIWDQKRQIRIETLQTGTSGKVQC-------MALDDNEEFLVI 1081
S +L T ++++ Q ++ L+ +G + +A + + L
Sbjct: 244 AFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFA 303
Query: 1082 GTSDGRIQAW 1091
G +D I+ W
Sbjct: 304 GYTDNVIRVW 313
>pdb|3FQ8|A Chain A, M248i Mutant Of Gsam
pdb|3FQ8|B Chain B, M248i Mutant Of Gsam
Length = 427
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Query: 272 AITSLCMSEILN---ESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDP 328
A+ S+ M +N E+ MAVL+I R + + + +G ++
Sbjct: 104 AVPSIEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFE------GCYHGHADMFLVKAGS 157
Query: 329 RVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKK--GLLEAVVLIDLLRPSTRT 386
V AT+ L S G K+ +TLT +D+E + ALF + G + V+L ++ S
Sbjct: 158 GV--ATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFI 215
Query: 387 LIEMDMMESL 396
+ + +E L
Sbjct: 216 VPDAGFLEGL 225
>pdb|3FQ7|A Chain A, Gabaculine Complex Of Gsam
pdb|3FQ7|B Chain B, Gabaculine Complex Of Gsam
pdb|3USF|A Chain A, Crystal Structure Of Dava-4
pdb|3USF|B Chain B, Crystal Structure Of Dava-4
Length = 427
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Query: 272 AITSLCMSEILN---ESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDP 328
A+ S+ M +N E+ MAVL+I R + + + +G ++
Sbjct: 104 AVPSIEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFE------GCYHGHADMFLVKAGS 157
Query: 329 RVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKK--GLLEAVVLIDLLRPSTRT 386
V AT+ L S G K+ +TLT +D+E + ALF + G + V+L ++ S
Sbjct: 158 GV--ATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFI 215
Query: 387 LIEMDMMESL 396
+ + +E L
Sbjct: 216 VPDAGFLEGL 225
>pdb|2E37|A Chain A, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|B Chain B, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|C Chain C, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|D Chain D, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|E Chain E, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|F Chain F, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|G Chain G, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|H Chain H, Structure Of Tt0471 Protein From Thermus Thermophilus
Length = 310
Score = 30.0 bits (66), Expect = 6.8, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 35 ELLDENCRVFASYFKQVLENSNDSGLIIVTPPSVVLRKIE-KVGGL 79
+LLD N +VFA +VLE + ++ L++ T P V ++ ++ GL
Sbjct: 87 QLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVXTQVAYRLSGL 132
>pdb|2HOY|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HOY|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HOZ|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HOZ|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HP1|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HP1|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HP2|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HP2|B Chain B, Inter-Subunit Signaling In Gsam
Length = 432
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Query: 272 AITSLCMSEILN---ESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDP 328
A+ S+ M +N E+ MAVL+I R + + + +G ++
Sbjct: 109 AVPSIEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFE------GCYHGHADMFLVKAGS 162
Query: 329 RVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKK--GLLEAVVLIDLLRPSTRT 386
V AT+ L S G K+ +TLT +D+E + ALF + G + V+L ++ S
Sbjct: 163 GV--ATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFI 220
Query: 387 LIEMDMMESL 396
+ + +E L
Sbjct: 221 VPDAGFLEGL 230
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 827 FSGHSDGTIKVW---TGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWS 883
S D T+++W TG Q+ H V + I + M+ SGS DKT +VW+
Sbjct: 81 LSASWDKTLRLWDVATGE-----TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWT 135
Query: 884 IGNEEIHCVQVHD 896
I + + + H+
Sbjct: 136 IKGQCLATLLGHN 148
Score = 30.0 bits (66), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 61/310 (19%), Positives = 114/310 (36%), Gaps = 42/310 (13%)
Query: 812 ENGKVLSIACFRDK---IFSGHSDGTIKVWTGRGSILHL---IQQIREHTKAVTGLAILQ 865
NG V S+A + + S D T+ W G ++ + H+ V +
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 75
Query: 866 SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQ-NLAVSNSILCFIPQGAGIKVHL 924
G S S DKT R+W + E + V D + ++ S++ + IKV
Sbjct: 76 DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWT 135
Query: 925 RNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPV 984
G +CLA + G Q + + I G+ K++ KA +
Sbjct: 136 IKG-----------QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMV-KAWNL 183
Query: 985 HALQV------HNGLVYTASTSLDG---------AAVKMWSTSNYNMVGSLPTLSEVRAM 1029
+ Q+ HN + T + S DG + +W+ + + +L EV ++
Sbjct: 184 NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSL 243
Query: 1030 VVSSELVYLGCKGGT-VEIWDQKRQIRIETLQTGTSGKVQC-------MALDDNEEFLVI 1081
S +L T ++++ Q ++ L+ +G + +A + + L
Sbjct: 244 AFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFA 303
Query: 1082 GTSDGRIQAW 1091
G +D I+ W
Sbjct: 304 GYTDNVIRVW 313
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 827 FSGHSDGTIKVW---TGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWS 883
S D T+++W TG Q+ H V + I + M+ SGS DKT +VW+
Sbjct: 81 LSASWDKTLRLWDVATGE-----TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWT 135
Query: 884 IGNEEIHCVQVHD 896
I + + + H+
Sbjct: 136 IKGQCLATLLGHN 148
Score = 29.6 bits (65), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 61/310 (19%), Positives = 114/310 (36%), Gaps = 42/310 (13%)
Query: 812 ENGKVLSIACFRDK---IFSGHSDGTIKVWTGRGSILHL---IQQIREHTKAVTGLAILQ 865
NG V S+A + + S D T+ W G ++ + H+ V +
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 75
Query: 866 SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQ-NLAVSNSILCFIPQGAGIKVHL 924
G S S DKT R+W + E + V D + ++ S++ + IKV
Sbjct: 76 DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWT 135
Query: 925 RNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPV 984
G +CLA + G Q + + I G+ K++ KA +
Sbjct: 136 IKG-----------QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMV-KAWNL 183
Query: 985 HALQV------HNGLVYTASTSLDG---------AAVKMWSTSNYNMVGSLPTLSEVRAM 1029
+ Q+ HN + T + S DG + +W+ + + +L EV ++
Sbjct: 184 NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSL 243
Query: 1030 VVSSELVYLGCKGGT-VEIWDQKRQIRIETLQTGTSGKVQC-------MALDDNEEFLVI 1081
S +L T ++++ Q ++ L+ +G + +A + + L
Sbjct: 244 AFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFA 303
Query: 1082 GTSDGRIQAW 1091
G +D I+ W
Sbjct: 304 GYTDNVIRVW 313
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 827 FSGHSDGTIKVW---TGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWS 883
S D T+++W TG Q+ H V + I + M+ SGS DKT +VW+
Sbjct: 81 LSASWDKTLRLWDVATGE-----TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWT 135
Query: 884 IGNEEIHCVQVHD 896
I + + + H+
Sbjct: 136 IKGQCLATLLGHN 148
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 827 FSGHSDGTIKVW---TGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWS 883
S D T+++W TG Q+ H V + I + M+ SGS DKT +VW+
Sbjct: 75 LSASWDKTLRLWDVATGE-----TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWT 129
Query: 884 IGNEEIHCVQVHD 896
I + + + H+
Sbjct: 130 IKGQCLATLLGHN 142
>pdb|1KQR|A Chain A, Crystal Structure Of The Rhesus Rotavirus Vp4 Sialic Acid
Binding Domain In Complex With
2-o-methyl-alpha-d-n-acetyl Neuraminic Acid
Length = 179
Score = 30.0 bits (66), Expect = 7.6, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 969 TIQTGHRKLLG--KANP-VHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMV 1017
T Q G G ++ P ++A+ HNG +YT + K +ST+NY+ V
Sbjct: 101 TTQNGSYSQYGPLQSTPKLYAVMKHNGKIYTYNGETPNVTTKYYSTTNYDSV 152
>pdb|1KRI|A Chain A, Nmr Solution Structures Of The Rhesus Rotavirus Vp4 Sialic
Acid Binding Domain Without Ligand
Length = 186
Score = 30.0 bits (66), Expect = 7.6, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 969 TIQTGHRKLLG--KANP-VHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMV 1017
T Q G G ++ P ++A+ HNG +YT + K +ST+NY+ V
Sbjct: 101 TTQNGSYSQYGPLQSTPKLYAVMKHNGKIYTYNGETPNVTTKYYSTTNYDSV 152
>pdb|2P3J|A Chain A, Crystal Structure Of The Arg101ala Mutant Protein Of Rhesus
Rotavirus Vp8
Length = 161
Score = 30.0 bits (66), Expect = 7.6, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 969 TIQTGHRKLLG--KANP-VHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMV 1017
T Q G G ++ P ++A+ HNG +YT + K +ST+NY+ V
Sbjct: 83 TTQNGSYSQYGPLQSTPKLYAVMKHNGKIYTYNGETPNVTTKYYSTTNYDSV 134
>pdb|2P3I|A Chain A, Crystal Structure Of Rhesus Rotavirus Vp8 At 295k
pdb|2P3K|A Chain A, Crystal Structure Of Rhesus Rotavirus Vp8* At 100k
pdb|3TB0|A Chain A, Crystal Structure Of Rhesus Rotavirus Vp8 In Complex With N-
Glycolylneuraminic Acid
Length = 161
Score = 30.0 bits (66), Expect = 7.6, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 969 TIQTGHRKLLG--KANP-VHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMV 1017
T Q G G ++ P ++A+ HNG +YT + K +ST+NY+ V
Sbjct: 83 TTQNGSYSQYGPLQSTPKLYAVMKHNGKIYTYNGETPNVTTKYYSTTNYDSV 134
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 30.0 bits (66), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 101/253 (39%), Gaps = 35/253 (13%)
Query: 869 MLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQI--QNLAVSNSILCFIPQGA-GIKVHL- 924
M S S DKT +VW + V + ++ + +++ ++ C + G G KV L
Sbjct: 114 MFTSSSFDKTLKVWDTNT--LQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLC 171
Query: 925 --RNGKTKLLNSSKYPKCLALVQGKVY-----CGCQDGAIQEIDL--ATGTFATIQTGHR 975
++G + + LA+ Y D ++ D+ A+G T+ +
Sbjct: 172 DLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNG 231
Query: 976 K---LLGKANPVHALQVHNGLVYTAS-----TSLDGAAVKMWSTSN-------YNMV--G 1018
K + AN H +V NGL +T+ T +++W++SN Y V
Sbjct: 232 KKSQAVESANTAHNGKV-NGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNN 290
Query: 1019 SLPTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEF 1078
S L + SSE V++ G T+ ++ +I L+ G V C N +
Sbjct: 291 SKKGLKFTVSCGCSSEFVFVP-YGSTIAVYTVYSGEQITMLK-GHYKTVDCCVFQSNFQE 348
Query: 1079 LVIGTSDGRIQAW 1091
L G+ D I AW
Sbjct: 349 LYSGSRDCNILAW 361
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 816 VLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEM---L 870
VLS+A D +I S D TIK+W G + I + E + + +
Sbjct: 475 VLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTI 534
Query: 871 YSGSLDKTARVWSIGN 886
S S DKT +VW++ N
Sbjct: 535 VSASWDKTVKVWNLSN 550
>pdb|3CZP|A Chain A, Crystal Structure Of Putative Polyphosphate Kinase 2 From
Pseudomonas Aeruginosa Pa01
pdb|3CZP|B Chain B, Crystal Structure Of Putative Polyphosphate Kinase 2 From
Pseudomonas Aeruginosa Pa01
Length = 500
Score = 30.0 bits (66), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 286 EMAVLQIERCWLEASMELDIQIMLSKPAVINGF--------VEILFNSVDPRVLEATIFL 337
E AV+++ LEA EL Q +ING V++L DPR++E FL
Sbjct: 19 EKAVIELREALLEAQFELKQQARFPVIILINGIEGAGKGETVKLLNEWXDPRLIEVQSFL 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,759,924
Number of Sequences: 62578
Number of extensions: 1093374
Number of successful extensions: 2974
Number of sequences better than 100.0: 95
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 2660
Number of HSP's gapped (non-prelim): 306
length of query: 1094
length of database: 14,973,337
effective HSP length: 109
effective length of query: 985
effective length of database: 8,152,335
effective search space: 8030049975
effective search space used: 8030049975
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)