Query 001349
Match_columns 1094
No_of_seqs 1140 out of 5132
Neff 8.4
Searched_HMMs 46136
Date Thu Mar 28 22:30:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001349.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001349hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 4.3E-40 9.3E-45 346.2 26.3 306 769-1092 111-479 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 2.9E-39 6.2E-44 345.0 21.1 272 775-1092 177-458 (459)
3 KOG0271 Notchless-like WD40 re 100.0 5.5E-37 1.2E-41 322.9 25.6 278 804-1093 106-438 (480)
4 KOG0279 G protein beta subunit 100.0 1.1E-33 2.3E-38 288.3 28.5 283 770-1094 12-313 (315)
5 KOG0286 G-protein beta subunit 100.0 2.1E-31 4.5E-36 272.8 29.8 281 767-1092 49-343 (343)
6 KOG0315 G-protein beta subunit 100.0 3.5E-31 7.7E-36 265.3 28.5 266 784-1094 9-288 (311)
7 KOG0272 U4/U6 small nuclear ri 100.0 3.9E-32 8.5E-37 290.6 20.2 237 811-1093 173-417 (459)
8 KOG0318 WD40 repeat stress pro 100.0 8.7E-30 1.9E-34 278.7 35.6 323 766-1094 183-602 (603)
9 KOG0319 WD40-repeat-containing 100.0 2.4E-30 5.1E-35 293.5 29.1 320 772-1094 104-577 (775)
10 KOG0285 Pleiotropic regulator 100.0 1.3E-30 2.8E-35 272.7 23.4 283 764-1092 142-437 (460)
11 KOG0281 Beta-TrCP (transducin 100.0 6.3E-32 1.4E-36 280.9 13.5 266 777-1093 199-476 (499)
12 KOG0284 Polyadenylation factor 100.0 4.2E-31 9E-36 281.3 16.2 270 775-1092 98-378 (464)
13 KOG0265 U5 snRNP-specific prot 100.0 3E-29 6.4E-34 258.2 24.8 277 770-1093 44-337 (338)
14 KOG0273 Beta-transducin family 100.0 3.7E-29 8.1E-34 270.8 25.6 271 775-1093 180-481 (524)
15 KOG0279 G protein beta subunit 100.0 1.3E-28 2.9E-33 251.2 27.5 244 806-1094 8-262 (315)
16 KOG0293 WD40 repeat-containing 100.0 3E-29 6.4E-34 266.9 23.6 290 757-1093 208-512 (519)
17 KOG0291 WD40-repeat-containing 100.0 1E-27 2.3E-32 271.8 36.8 309 776-1093 99-507 (893)
18 KOG0263 Transcription initiati 100.0 2.9E-29 6.4E-34 288.3 23.9 236 813-1094 378-649 (707)
19 KOG0296 Angio-associated migra 100.0 5.1E-28 1.1E-32 255.0 31.0 305 778-1094 69-398 (399)
20 KOG0318 WD40 repeat stress pro 100.0 1.5E-27 3.3E-32 261.2 35.6 322 770-1094 144-560 (603)
21 KOG0286 G-protein beta subunit 100.0 3.8E-28 8.2E-33 249.0 29.0 247 806-1093 48-302 (343)
22 KOG0295 WD40 repeat-containing 100.0 6.3E-29 1.4E-33 261.6 23.3 277 799-1092 93-404 (406)
23 KOG0291 WD40-repeat-containing 100.0 7.8E-28 1.7E-32 272.8 31.9 271 779-1093 313-611 (893)
24 KOG0645 WD40 repeat protein [G 100.0 1.8E-27 4E-32 241.8 30.9 274 806-1094 7-311 (312)
25 KOG0263 Transcription initiati 100.0 1.8E-28 3.8E-33 281.9 25.0 259 778-1082 383-703 (707)
26 KOG0281 Beta-TrCP (transducin 100.0 8.1E-30 1.8E-34 265.3 12.7 232 812-1094 196-428 (499)
27 PLN00181 protein SPA1-RELATED; 100.0 3.2E-27 6.9E-32 300.4 38.1 275 773-1093 483-792 (793)
28 cd00200 WD40 WD40 domain, foun 100.0 8E-27 1.7E-31 257.1 34.7 277 770-1092 6-289 (289)
29 KOG0266 WD40 repeat-containing 100.0 1.7E-27 3.8E-32 282.2 31.3 272 778-1093 164-453 (456)
30 KOG0313 Microtubule binding pr 100.0 9.7E-28 2.1E-32 253.9 25.8 286 784-1092 114-416 (423)
31 KOG0273 Beta-transducin family 100.0 4.1E-27 8.8E-32 255.1 30.4 268 778-1093 240-522 (524)
32 KOG0278 Serine/threonine kinas 100.0 1.6E-28 3.4E-33 246.1 16.7 270 778-1094 22-297 (334)
33 KOG0316 Conserved WD40 repeat- 100.0 1.2E-27 2.6E-32 238.0 22.6 272 771-1091 15-296 (307)
34 KOG0319 WD40-repeat-containing 100.0 1E-26 2.2E-31 264.2 29.6 290 785-1092 293-617 (775)
35 KOG0285 Pleiotropic regulator 100.0 2.4E-27 5.2E-32 248.3 21.6 244 800-1093 137-388 (460)
36 KOG0276 Vesicle coat complex C 100.0 8.9E-27 1.9E-31 259.0 25.3 272 774-1090 14-295 (794)
37 KOG0292 Vesicle coat complex C 100.0 1.3E-26 2.7E-31 266.0 26.4 276 777-1093 11-320 (1202)
38 KOG0315 G-protein beta subunit 100.0 4.1E-26 8.9E-31 229.0 26.1 255 778-1073 45-309 (311)
39 KOG0643 Translation initiation 99.9 1.4E-26 3E-31 234.7 22.0 268 808-1093 5-316 (327)
40 KOG0295 WD40 repeat-containing 99.9 2.4E-26 5.3E-31 242.1 23.7 262 772-1050 107-405 (406)
41 KOG0282 mRNA splicing factor [ 99.9 1.5E-26 3.2E-31 252.0 20.8 277 799-1092 200-503 (503)
42 KOG0274 Cdc4 and related F-box 99.9 1E-25 2.2E-30 266.2 29.1 263 779-1094 212-482 (537)
43 KOG0288 WD40 repeat protein Ti 99.9 6.3E-27 1.4E-31 250.0 17.0 278 766-1092 168-459 (459)
44 KOG0306 WD40-repeat-containing 99.9 1.3E-25 2.9E-30 254.7 25.4 278 770-1093 370-663 (888)
45 KOG0275 Conserved WD40 repeat- 99.9 2.2E-26 4.7E-31 237.5 16.9 271 776-1092 216-507 (508)
46 KOG0266 WD40 repeat-containing 99.9 6.6E-25 1.4E-29 260.3 31.1 245 807-1094 152-409 (456)
47 KOG0284 Polyadenylation factor 99.9 1.9E-26 4.1E-31 245.9 14.0 235 813-1093 96-336 (464)
48 KOG1407 WD40 repeat protein [F 99.9 3.3E-24 7.1E-29 217.0 28.5 281 764-1093 11-310 (313)
49 KOG0265 U5 snRNP-specific prot 99.9 7E-25 1.5E-29 226.1 23.7 246 804-1094 38-296 (338)
50 KOG0306 WD40-repeat-containing 99.9 4.4E-24 9.6E-29 242.5 30.1 317 770-1092 104-620 (888)
51 cd00200 WD40 WD40 domain, foun 99.9 1.2E-23 2.7E-28 231.6 32.0 242 807-1094 3-249 (289)
52 KOG0276 Vesicle coat complex C 99.9 9.2E-25 2E-29 243.1 22.3 241 808-1093 8-256 (794)
53 KOG0645 WD40 repeat protein [G 99.9 8.3E-24 1.8E-28 215.4 27.4 254 778-1051 19-311 (312)
54 KOG0640 mRNA cleavage stimulat 99.9 6.2E-25 1.3E-29 226.2 18.5 281 771-1092 110-424 (430)
55 KOG0277 Peroxisomal targeting 99.9 1.7E-24 3.7E-29 218.2 20.0 275 774-1092 12-307 (311)
56 KOG0313 Microtubule binding pr 99.9 3E-24 6.5E-29 227.5 21.8 243 810-1093 102-375 (423)
57 KOG0289 mRNA splicing factor [ 99.9 1.8E-23 3.8E-28 224.7 26.0 265 785-1094 231-506 (506)
58 KOG0305 Anaphase promoting com 99.9 1.2E-23 2.5E-28 239.6 25.9 258 790-1093 192-460 (484)
59 KOG0292 Vesicle coat complex C 99.9 2E-23 4.3E-28 240.0 27.3 276 766-1059 44-329 (1202)
60 KOG0316 Conserved WD40 repeat- 99.9 1.1E-23 2.4E-28 209.9 21.9 242 805-1093 9-256 (307)
61 KOG0310 Conserved WD40 repeat- 99.9 1.3E-23 2.9E-28 229.6 24.4 249 795-1090 48-305 (487)
62 KOG0973 Histone transcription 99.9 2E-23 4.4E-28 248.1 27.7 281 778-1094 18-355 (942)
63 PTZ00420 coronin; Provisional 99.9 1.1E-22 2.4E-27 241.2 33.5 242 791-1076 50-318 (568)
64 PLN00181 protein SPA1-RELATED; 99.9 9.6E-23 2.1E-27 259.4 35.5 254 794-1093 457-737 (793)
65 KOG0772 Uncharacterized conser 99.9 9.3E-24 2E-28 230.7 21.9 284 771-1091 165-484 (641)
66 PTZ00421 coronin; Provisional 99.9 1.6E-22 3.4E-27 239.1 34.0 255 780-1076 27-315 (493)
67 KOG0296 Angio-associated migra 99.9 1.5E-22 3.1E-27 214.0 27.3 270 805-1093 56-355 (399)
68 KOG0268 Sof1-like rRNA process 99.9 4.4E-24 9.6E-29 224.7 14.9 261 808-1092 61-343 (433)
69 KOG0283 WD40 repeat-containing 99.9 3.8E-23 8.3E-28 240.3 23.9 241 808-1093 261-575 (712)
70 KOG0274 Cdc4 and related F-box 99.9 6.6E-23 1.4E-27 242.4 25.8 232 811-1094 206-441 (537)
71 KOG0294 WD40 repeat-containing 99.9 2.1E-22 4.6E-27 209.0 26.2 259 787-1094 3-281 (362)
72 KOG0282 mRNA splicing factor [ 99.9 7.4E-24 1.6E-28 231.0 16.0 264 770-1049 211-503 (503)
73 KOG1539 WD repeat protein [Gen 99.9 4.2E-22 9.1E-27 229.3 30.7 307 781-1094 168-606 (910)
74 KOG0308 Conserved WD40 repeat- 99.9 1.4E-23 3.1E-28 235.3 18.1 275 783-1093 35-326 (735)
75 KOG0301 Phospholipase A2-activ 99.9 2.5E-22 5.4E-27 227.2 25.3 253 784-1093 24-287 (745)
76 KOG0275 Conserved WD40 repeat- 99.9 3.1E-23 6.7E-28 214.3 16.3 242 809-1093 209-466 (508)
77 KOG0283 WD40 repeat-containing 99.9 1.1E-22 2.3E-27 236.6 22.4 238 771-1051 265-576 (712)
78 KOG0310 Conserved WD40 repeat- 99.9 3.9E-22 8.5E-27 218.2 25.4 229 778-1051 73-309 (487)
79 PTZ00421 coronin; Provisional 99.9 1.9E-21 4.1E-26 230.0 32.7 232 825-1094 34-290 (493)
80 KOG1036 Mitotic spindle checkp 99.9 8E-22 1.7E-26 204.8 25.5 259 778-1084 18-294 (323)
81 KOG0647 mRNA export protein (c 99.9 7.6E-22 1.6E-26 203.9 24.7 262 806-1082 20-311 (347)
82 PTZ00420 coronin; Provisional 99.9 4.8E-21 1E-25 227.3 34.2 227 828-1094 49-293 (568)
83 KOG1446 Histone H3 (Lys4) meth 99.9 6.2E-21 1.3E-25 199.4 29.8 271 775-1091 16-300 (311)
84 KOG0294 WD40 repeat-containing 99.9 1.8E-21 3.9E-26 202.2 24.5 242 771-1031 39-305 (362)
85 KOG0277 Peroxisomal targeting 99.9 1.6E-22 3.5E-27 204.0 16.2 228 780-1050 68-308 (311)
86 KOG1332 Vesicle coat complex C 99.9 4.4E-22 9.4E-27 199.9 17.5 254 769-1092 7-284 (299)
87 KOG1408 WD40 repeat protein [F 99.9 7.7E-22 1.7E-26 222.0 21.2 272 785-1094 392-713 (1080)
88 KOG2096 WD40 repeat protein [G 99.9 7.9E-21 1.7E-25 197.0 25.1 289 766-1092 79-400 (420)
89 KOG1407 WD40 repeat protein [F 99.9 4.3E-21 9.2E-26 194.6 21.7 238 807-1090 14-257 (313)
90 KOG0300 WD40 repeat-containing 99.9 4E-21 8.7E-26 198.4 21.7 290 785-1094 124-476 (481)
91 KOG0641 WD40 repeat protein [G 99.9 7.6E-20 1.7E-24 181.0 29.7 281 775-1094 34-349 (350)
92 KOG0264 Nucleosome remodeling 99.9 2.2E-21 4.8E-26 211.2 20.8 248 810-1094 121-404 (422)
93 KOG0293 WD40 repeat-containing 99.9 2.6E-21 5.6E-26 206.7 20.7 245 805-1093 216-469 (519)
94 KOG0647 mRNA export protein (c 99.9 1.2E-20 2.5E-25 195.2 23.7 261 776-1042 30-315 (347)
95 KOG0299 U3 snoRNP-associated p 99.9 8.2E-21 1.8E-25 206.3 23.2 271 771-1091 140-453 (479)
96 KOG0299 U3 snoRNP-associated p 99.9 8.5E-21 1.8E-25 206.2 22.8 243 807-1094 136-410 (479)
97 KOG0289 mRNA splicing factor [ 99.9 1.7E-20 3.7E-25 201.9 23.3 236 814-1092 220-460 (506)
98 KOG0288 WD40 repeat protein Ti 99.9 1.3E-21 2.7E-26 209.7 13.4 244 804-1093 166-416 (459)
99 KOG1539 WD repeat protein [Gen 99.9 1.3E-19 2.9E-24 208.8 30.6 296 785-1092 214-646 (910)
100 KOG0640 mRNA cleavage stimulat 99.9 1.1E-20 2.4E-25 195.0 18.3 246 807-1092 106-381 (430)
101 KOG0308 Conserved WD40 repeat- 99.9 5.4E-21 1.2E-25 214.8 17.2 231 825-1093 39-284 (735)
102 KOG1063 RNA polymerase II elon 99.9 6.1E-20 1.3E-24 207.8 24.2 316 770-1093 188-647 (764)
103 KOG0269 WD40 repeat-containing 99.8 6.7E-21 1.4E-25 218.0 15.5 232 816-1089 90-335 (839)
104 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 2.4E-18 5.3E-23 193.2 34.9 258 786-1094 2-279 (300)
105 KOG4283 Transcription-coupled 99.8 1.7E-19 3.8E-24 185.2 22.6 270 784-1093 55-364 (397)
106 KOG0646 WD40 repeat protein [G 99.8 1.2E-19 2.7E-24 197.6 22.6 230 785-1093 50-306 (476)
107 KOG0301 Phospholipase A2-activ 99.8 7E-20 1.5E-24 207.5 21.3 237 805-1093 6-248 (745)
108 KOG2055 WD40 repeat protein [G 99.8 2.7E-19 5.9E-24 194.3 24.9 270 812-1094 212-512 (514)
109 KOG2445 Nuclear pore complex c 99.8 6.3E-19 1.4E-23 182.7 26.2 255 808-1093 8-317 (361)
110 KOG0278 Serine/threonine kinas 99.8 1.3E-20 2.8E-25 189.5 13.3 240 807-1093 8-253 (334)
111 KOG1446 Histone H3 (Lys4) meth 99.8 2E-18 4.4E-23 180.7 29.8 239 808-1094 9-262 (311)
112 KOG0321 WD40 repeat-containing 99.8 1.1E-19 2.3E-24 204.1 20.4 301 785-1093 64-390 (720)
113 KOG1408 WD40 repeat protein [F 99.8 1.4E-18 3E-23 196.0 28.3 307 780-1093 265-670 (1080)
114 KOG2106 Uncharacterized conser 99.8 1.3E-17 2.9E-22 182.5 34.2 299 779-1092 206-519 (626)
115 KOG0264 Nucleosome remodeling 99.8 2.1E-19 4.5E-24 196.0 19.9 232 780-1051 132-404 (422)
116 KOG0643 Translation initiation 99.8 3.3E-19 7.3E-24 181.4 19.6 266 770-1052 7-318 (327)
117 KOG0973 Histone transcription 99.8 7.3E-19 1.6E-23 209.6 25.1 254 812-1093 12-311 (942)
118 KOG0305 Anaphase promoting com 99.8 3.5E-19 7.6E-24 203.1 21.5 237 774-1053 218-463 (484)
119 KOG0270 WD40 repeat-containing 99.8 3.1E-19 6.8E-24 193.4 18.3 225 785-1056 192-454 (463)
120 KOG4328 WD40 protein [Function 99.8 9.6E-19 2.1E-23 190.0 22.0 277 806-1092 179-493 (498)
121 KOG0772 Uncharacterized conser 99.8 2.7E-19 5.8E-24 196.1 17.4 237 847-1092 159-443 (641)
122 KOG2106 Uncharacterized conser 99.8 7.8E-18 1.7E-22 184.3 28.5 311 769-1094 100-477 (626)
123 KOG0300 WD40 repeat-containing 99.8 1.1E-18 2.4E-23 180.5 20.0 251 787-1053 162-478 (481)
124 KOG0639 Transducin-like enhanc 99.8 1.8E-19 3.9E-24 196.3 14.8 229 775-1050 467-703 (705)
125 KOG1036 Mitotic spindle checkp 99.8 3.1E-18 6.7E-23 178.3 23.2 230 810-1093 10-261 (323)
126 KOG2048 WD40 repeat protein [G 99.8 1E-17 2.2E-22 190.1 29.2 273 778-1091 30-316 (691)
127 KOG0641 WD40 repeat protein [G 99.8 1.8E-17 3.9E-22 164.3 26.7 240 812-1093 31-302 (350)
128 KOG1274 WD40 repeat protein [G 99.8 6.5E-18 1.4E-22 197.3 27.6 269 779-1091 19-297 (933)
129 KOG0269 WD40 repeat-containing 99.8 1.8E-19 3.9E-24 206.4 14.4 235 778-1054 93-343 (839)
130 KOG0639 Transducin-like enhanc 99.8 7.3E-19 1.6E-23 191.6 17.9 268 779-1093 425-703 (705)
131 KOG1274 WD40 repeat protein [G 99.8 5.6E-18 1.2E-22 197.9 26.4 238 810-1094 10-262 (933)
132 KOG0267 Microtubule severing p 99.8 6.2E-20 1.3E-24 208.4 9.9 247 789-1085 8-259 (825)
133 KOG0268 Sof1-like rRNA process 99.8 5.1E-19 1.1E-23 186.8 13.9 251 786-1056 80-350 (433)
134 KOG0267 Microtubule severing p 99.8 1.1E-19 2.4E-24 206.5 9.6 216 781-1041 36-258 (825)
135 KOG0650 WD40 repeat nucleolar 99.8 1E-17 2.2E-22 186.8 23.4 267 805-1091 392-732 (733)
136 KOG2445 Nuclear pore complex c 99.8 4E-17 8.6E-22 169.5 24.3 260 771-1059 11-329 (361)
137 KOG1273 WD40 repeat protein [G 99.8 3.3E-17 7.2E-22 170.2 23.2 275 776-1093 26-321 (405)
138 KOG0646 WD40 repeat protein [G 99.8 1.5E-17 3.3E-22 181.5 18.5 237 776-1050 84-349 (476)
139 KOG2048 WD40 repeat protein [G 99.8 2.2E-16 4.8E-21 179.3 28.0 238 812-1093 24-274 (691)
140 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 8.1E-16 1.7E-20 172.7 32.3 254 778-1074 35-300 (300)
141 KOG0302 Ribosome Assembly prot 99.8 2.7E-17 5.8E-22 174.8 18.4 217 851-1094 147-378 (440)
142 KOG4283 Transcription-coupled 99.7 1.6E-16 3.5E-21 163.6 22.6 245 807-1093 37-333 (397)
143 KOG0302 Ribosome Assembly prot 99.7 9.6E-17 2.1E-21 170.6 21.2 244 808-1091 146-435 (440)
144 KOG0322 G-protein beta subunit 99.7 1.8E-17 3.8E-22 168.7 14.9 278 805-1093 6-322 (323)
145 KOG4378 Nuclear protein COP1 [ 99.7 3.8E-17 8.3E-22 178.3 18.4 247 787-1076 49-305 (673)
146 KOG2096 WD40 repeat protein [G 99.7 6.4E-17 1.4E-21 168.2 18.9 209 849-1094 80-308 (420)
147 KOG0270 WD40 repeat-containing 99.7 1.4E-16 3E-21 173.0 21.9 271 783-1094 135-449 (463)
148 KOG1009 Chromatin assembly com 99.7 3.3E-16 7.2E-21 168.4 22.6 281 787-1090 28-368 (434)
149 KOG1063 RNA polymerase II elon 99.7 1.2E-15 2.6E-20 173.3 27.3 322 765-1093 259-698 (764)
150 KOG4378 Nuclear protein COP1 [ 99.7 2.1E-16 4.5E-21 172.6 19.6 257 790-1093 7-279 (673)
151 KOG1445 Tumor-specific antigen 99.7 9.2E-16 2E-20 171.4 24.0 109 982-1092 628-748 (1012)
152 KOG2919 Guanine nucleotide-bin 99.7 6E-16 1.3E-20 161.5 20.8 272 775-1085 51-361 (406)
153 KOG0307 Vesicle coat complex C 99.7 4.6E-17 9.9E-22 195.1 14.2 261 792-1093 36-326 (1049)
154 PF04564 U-box: U-box domain; 99.7 6.6E-18 1.4E-22 145.8 4.9 72 160-232 1-72 (73)
155 KOG1332 Vesicle coat complex C 99.7 8.1E-17 1.8E-21 162.3 13.2 203 807-1093 5-240 (299)
156 KOG1034 Transcriptional repres 99.7 5.8E-16 1.3E-20 162.2 20.0 268 785-1093 55-382 (385)
157 KOG2055 WD40 repeat protein [G 99.7 3.7E-16 7.9E-21 170.2 18.1 278 765-1051 203-512 (514)
158 KOG1034 Transcriptional repres 99.7 1.3E-16 2.7E-21 167.1 13.3 249 786-1051 106-383 (385)
159 KOG1188 WD40 repeat protein [G 99.7 7.4E-16 1.6E-20 162.4 19.0 269 786-1093 41-345 (376)
160 KOG0642 Cell-cycle nuclear pro 99.7 2.7E-16 5.9E-21 175.4 14.4 258 799-1093 283-560 (577)
161 KOG1273 WD40 repeat protein [G 99.7 2.1E-15 4.6E-20 156.9 19.2 237 816-1093 26-279 (405)
162 KOG4227 WD40 repeat protein [G 99.7 5.6E-15 1.2E-19 157.0 22.0 289 764-1092 47-385 (609)
163 KOG0307 Vesicle coat complex C 99.7 3.3E-16 7.2E-21 187.8 14.0 226 786-1054 81-330 (1049)
164 KOG1587 Cytoplasmic dynein int 99.7 8.1E-15 1.8E-19 172.4 25.0 272 795-1094 222-516 (555)
165 COG2319 FOG: WD40 repeat [Gene 99.7 4.8E-13 1E-17 155.4 39.4 296 782-1093 119-441 (466)
166 KOG0321 WD40 repeat-containing 99.7 2.4E-15 5.2E-20 169.5 18.6 238 784-1053 111-393 (720)
167 KOG0644 Uncharacterized conser 99.7 4.5E-16 9.8E-21 179.1 12.6 270 770-1093 187-467 (1113)
168 KOG0650 WD40 repeat nucleolar 99.7 4.5E-15 9.9E-20 165.9 19.7 236 846-1092 391-678 (733)
169 KOG0649 WD40 repeat protein [G 99.6 8.9E-14 1.9E-18 140.2 26.9 269 778-1091 15-313 (325)
170 KOG0642 Cell-cycle nuclear pro 99.6 1.2E-15 2.7E-20 170.3 14.6 250 772-1059 293-569 (577)
171 KOG1538 Uncharacterized conser 99.6 1.7E-14 3.6E-19 162.2 22.0 257 815-1093 14-292 (1081)
172 KOG1963 WD40 repeat protein [G 99.6 1.8E-13 3.8E-18 160.7 31.2 294 790-1093 176-537 (792)
173 KOG0649 WD40 repeat protein [G 99.6 5.3E-14 1.1E-18 141.8 22.5 235 815-1093 12-273 (325)
174 COG2319 FOG: WD40 repeat [Gene 99.6 7.2E-13 1.6E-17 154.0 35.7 277 773-1093 65-358 (466)
175 PRK11028 6-phosphogluconolacto 99.6 3.4E-13 7.4E-18 154.5 32.1 267 788-1093 5-303 (330)
176 KOG0303 Actin-binding protein 99.6 2.2E-14 4.7E-19 153.6 19.7 207 806-1055 74-298 (472)
177 KOG1517 Guanine nucleotide bin 99.6 5.4E-14 1.2E-18 166.0 23.9 272 782-1093 1073-1380(1387)
178 KOG1538 Uncharacterized conser 99.6 4.3E-14 9.3E-19 159.0 19.1 252 775-1051 14-293 (1081)
179 KOG0303 Actin-binding protein 99.6 8.1E-14 1.8E-18 149.3 19.7 217 781-1037 90-323 (472)
180 KOG4328 WD40 protein [Function 99.6 8.8E-14 1.9E-18 151.8 20.3 267 776-1051 189-495 (498)
181 KOG1007 WD repeat protein TSSC 99.6 2E-13 4.4E-18 140.8 20.5 258 794-1093 39-360 (370)
182 smart00504 Ubox Modified RING 99.6 3.3E-15 7.2E-20 126.1 5.3 63 163-227 1-63 (63)
183 KOG1240 Protein kinase contain 99.5 5.4E-13 1.2E-17 160.3 25.0 261 800-1094 1034-1334(1431)
184 KOG2110 Uncharacterized conser 99.5 1.9E-12 4.1E-17 138.5 26.0 234 855-1094 5-248 (391)
185 KOG0290 Conserved WD40 repeat- 99.5 4.9E-13 1.1E-17 138.2 20.7 263 786-1091 60-362 (364)
186 PLN03200 cellulose synthase-in 99.5 1.2E-12 2.5E-17 170.7 27.4 324 265-611 11-394 (2102)
187 KOG4497 Uncharacterized conser 99.5 3.8E-12 8.3E-17 133.5 24.7 304 776-1087 11-425 (447)
188 PRK01742 tolB translocation pr 99.5 8E-13 1.7E-17 156.6 21.8 231 794-1075 183-426 (429)
189 KOG2919 Guanine nucleotide-bin 99.5 1.3E-12 2.8E-17 136.9 20.2 243 816-1093 52-326 (406)
190 KOG1524 WD40 repeat-containing 99.5 6.9E-13 1.5E-17 146.7 18.0 206 824-1090 76-282 (737)
191 KOG0771 Prolactin regulatory e 99.5 3.5E-13 7.6E-18 146.7 15.2 194 859-1093 148-353 (398)
192 KOG1517 Guanine nucleotide bin 99.5 1.6E-12 3.6E-17 153.7 21.9 260 793-1094 1048-1333(1387)
193 PRK11028 6-phosphogluconolacto 99.5 1.6E-11 3.4E-16 140.8 28.8 229 826-1093 5-257 (330)
194 KOG1445 Tumor-specific antigen 99.5 2.1E-13 4.6E-18 152.7 12.4 141 778-926 633-785 (1012)
195 KOG1188 WD40 repeat protein [G 99.5 2.6E-12 5.6E-17 136.0 19.3 193 824-1059 41-250 (376)
196 KOG0644 Uncharacterized conser 99.5 7.7E-14 1.7E-18 161.1 7.6 238 806-1094 183-426 (1113)
197 KOG1334 WD40 repeat protein [G 99.5 3.7E-13 8E-18 147.9 12.6 287 770-1092 139-464 (559)
198 PRK01742 tolB translocation pr 99.4 4.8E-12 1E-16 149.9 22.2 210 832-1093 183-400 (429)
199 KOG0771 Prolactin regulatory e 99.4 1.2E-12 2.6E-17 142.6 15.0 201 817-1052 148-355 (398)
200 KOG2110 Uncharacterized conser 99.4 1.3E-10 2.9E-15 124.6 29.9 226 781-1052 13-249 (391)
201 KOG0290 Conserved WD40 repeat- 99.4 7.8E-12 1.7E-16 129.4 19.9 242 814-1094 45-318 (364)
202 KOG1963 WD40 repeat protein [G 99.4 3.9E-11 8.5E-16 141.3 26.3 267 818-1093 21-321 (792)
203 KOG1007 WD repeat protein TSSC 99.4 4.2E-12 9.2E-17 131.2 15.7 230 831-1093 38-288 (370)
204 KOG1240 Protein kinase contain 99.4 2.9E-11 6.3E-16 145.7 24.0 273 780-1092 1056-1431(1431)
205 KOG1523 Actin-related protein 99.4 1.9E-11 4E-16 128.6 18.9 223 812-1074 9-259 (361)
206 KOG1523 Actin-related protein 99.4 3.2E-11 7E-16 126.8 18.7 231 776-1042 13-269 (361)
207 PLN03200 cellulose synthase-in 99.4 3.8E-11 8.3E-16 156.9 23.5 310 282-613 418-768 (2102)
208 KOG1009 Chromatin assembly com 99.4 1.1E-11 2.4E-16 134.0 15.2 174 812-1014 12-197 (434)
209 KOG0322 G-protein beta subunit 99.3 1.8E-11 3.9E-16 125.3 15.8 234 786-1050 26-322 (323)
210 KOG4227 WD40 repeat protein [G 99.3 4.3E-11 9.4E-16 127.8 19.2 244 807-1094 50-322 (609)
211 KOG1587 Cytoplasmic dynein int 99.3 6.5E-11 1.4E-15 139.7 21.5 224 832-1093 221-471 (555)
212 KOG1272 WD40-repeat-containing 99.3 4.1E-12 8.9E-17 139.0 10.1 259 781-1086 137-401 (545)
213 PRK05137 tolB translocation pr 99.3 6.9E-10 1.5E-14 131.9 29.0 212 833-1093 182-411 (435)
214 PF02239 Cytochrom_D1: Cytochr 99.3 1.2E-09 2.7E-14 125.6 29.6 293 787-1093 8-346 (369)
215 PF15227 zf-C3HC4_4: zinc fing 99.3 1.2E-12 2.5E-17 99.2 3.1 39 166-204 1-42 (42)
216 PRK04922 tolB translocation pr 99.3 4.9E-10 1.1E-14 133.1 27.0 212 833-1093 184-410 (433)
217 KOG1310 WD40 repeat protein [G 99.3 2.1E-11 4.4E-16 135.5 13.9 215 846-1094 41-303 (758)
218 PRK03629 tolB translocation pr 99.3 8.3E-10 1.8E-14 130.6 28.6 212 833-1093 179-405 (429)
219 PRK03629 tolB translocation pr 99.3 1.8E-09 3.9E-14 127.8 31.3 231 795-1074 179-427 (429)
220 KOG2111 Uncharacterized conser 99.3 2.8E-09 6E-14 112.5 27.4 227 815-1052 7-257 (346)
221 PRK04922 tolB translocation pr 99.3 7.4E-10 1.6E-14 131.6 26.3 231 795-1074 184-432 (433)
222 KOG2139 WD40 repeat protein [G 99.3 5.9E-09 1.3E-13 111.5 29.2 267 781-1093 106-430 (445)
223 KOG3881 Uncharacterized conser 99.2 2.5E-10 5.5E-15 123.2 18.3 212 779-1034 109-342 (412)
224 KOG2321 WD40 repeat protein [G 99.2 1.1E-09 2.4E-14 123.0 23.9 263 811-1091 49-340 (703)
225 PRK05137 tolB translocation pr 99.2 2.7E-09 5.8E-14 126.9 28.8 231 796-1074 183-432 (435)
226 KOG2321 WD40 repeat protein [G 99.2 7.3E-10 1.6E-14 124.4 21.4 224 853-1092 49-300 (703)
227 KOG2111 Uncharacterized conser 99.2 3E-09 6.4E-14 112.3 24.7 229 857-1093 7-255 (346)
228 PRK02889 tolB translocation pr 99.2 2.3E-09 5E-14 127.0 25.9 232 795-1075 176-425 (427)
229 KOG3881 Uncharacterized conser 99.2 1.2E-09 2.7E-14 118.0 21.0 252 787-1076 71-343 (412)
230 KOG1272 WD40-repeat-containing 99.2 2.3E-11 4.9E-16 133.3 7.5 188 858-1093 132-322 (545)
231 KOG2394 WD40 protein DMR-N9 [G 99.2 7E-10 1.5E-14 123.8 19.1 210 858-1073 126-383 (636)
232 KOG1524 WD40 repeat-containing 99.2 6.5E-10 1.4E-14 123.6 18.6 193 785-1006 75-281 (737)
233 PRK02889 tolB translocation pr 99.2 2.7E-09 5.8E-14 126.4 24.4 205 833-1086 176-392 (427)
234 KOG1334 WD40 repeat protein [G 99.2 2.4E-10 5.1E-15 126.2 13.8 247 806-1092 135-422 (559)
235 TIGR00599 rad18 DNA repair pro 99.2 2.1E-11 4.5E-16 137.2 5.6 72 159-232 22-93 (397)
236 PLN03208 E3 ubiquitin-protein 99.2 1.8E-11 3.8E-16 122.5 4.2 59 160-219 15-88 (193)
237 KOG1310 WD40 repeat protein [G 99.1 2.1E-10 4.6E-15 127.6 12.3 122 766-887 43-180 (758)
238 KOG2139 WD40 repeat protein [G 99.1 1.7E-09 3.8E-14 115.4 18.6 194 813-1083 98-299 (445)
239 TIGR03300 assembly_YfgL outer 99.1 7.3E-08 1.6E-12 112.6 34.2 287 784-1091 64-376 (377)
240 KOG1409 Uncharacterized conser 99.1 3.8E-09 8.3E-14 112.3 19.0 313 771-1094 22-394 (404)
241 PF02239 Cytochrom_D1: Cytochr 99.1 2.7E-08 5.8E-13 114.6 26.7 251 825-1094 8-302 (369)
242 TIGR02800 propeller_TolB tol-p 99.1 2.4E-08 5.1E-13 118.5 27.0 206 832-1086 169-386 (417)
243 PF10282 Lactonase: Lactonase, 99.1 3.7E-07 8.1E-12 105.0 34.9 274 788-1093 2-321 (345)
244 PF08662 eIF2A: Eukaryotic tra 99.0 1.8E-08 3.8E-13 105.6 20.6 108 981-1094 59-179 (194)
245 KOG0287 Postreplication repair 99.0 6.8E-11 1.5E-15 124.1 2.1 69 160-230 20-88 (442)
246 KOG2315 Predicted translation 99.0 8.6E-08 1.9E-12 108.4 26.7 291 779-1094 40-390 (566)
247 KOG0974 WD-repeat protein WDR6 99.0 1.4E-08 3E-13 122.0 21.0 222 825-1093 63-287 (967)
248 PRK00178 tolB translocation pr 99.0 9.6E-08 2.1E-12 113.7 28.4 213 834-1093 180-405 (430)
249 PRK04792 tolB translocation pr 99.0 1.9E-07 4.1E-12 111.1 28.9 211 834-1093 199-424 (448)
250 PRK04792 tolB translocation pr 99.0 1.3E-07 2.8E-12 112.6 27.3 232 796-1074 199-446 (448)
251 KOG1354 Serine/threonine prote 99.0 2.7E-08 5.9E-13 105.8 18.7 279 775-1091 27-431 (433)
252 PF13923 zf-C3HC4_2: Zinc fing 99.0 3.3E-10 7.2E-15 85.0 3.2 38 166-204 1-39 (39)
253 TIGR02800 propeller_TolB tol-p 99.0 3.2E-07 6.9E-12 108.8 30.0 231 795-1072 170-416 (417)
254 KOG1064 RAVE (regulator of V-A 99.0 3.8E-09 8.1E-14 131.7 13.4 245 788-1087 2183-2439(2439)
255 PRK00178 tolB translocation pr 99.0 3.9E-07 8.5E-12 108.5 30.5 233 796-1075 180-428 (430)
256 KOG2394 WD40 protein DMR-N9 [G 99.0 2.2E-08 4.7E-13 112.1 18.0 183 784-1032 184-383 (636)
257 KOG0974 WD-repeat protein WDR6 98.9 1.5E-08 3.3E-13 121.8 17.0 199 768-1013 82-289 (967)
258 KOG2041 WD40 repeat protein [G 98.9 5.3E-08 1.1E-12 111.6 20.0 239 778-1034 19-319 (1189)
259 KOG1064 RAVE (regulator of V-A 98.9 4.1E-09 8.9E-14 131.3 12.1 208 829-1094 2186-2398(2439)
260 PF08662 eIF2A: Eukaryotic tra 98.9 9.5E-08 2.1E-12 100.1 20.4 156 859-1059 9-186 (194)
261 TIGR02658 TTQ_MADH_Hv methylam 98.9 3E-06 6.4E-11 95.7 32.9 251 833-1093 27-329 (352)
262 KOG4547 WD40 repeat-containing 98.9 5.4E-08 1.2E-12 110.9 18.5 205 865-1092 3-218 (541)
263 PF14835 zf-RING_6: zf-RING of 98.9 4.6E-10 9.9E-15 90.1 1.1 58 163-224 7-65 (65)
264 COG5432 RAD18 RING-finger-cont 98.9 8.7E-10 1.9E-14 113.5 2.6 69 160-230 22-90 (391)
265 KOG0280 Uncharacterized conser 98.9 2.5E-07 5.5E-12 96.9 20.4 256 794-1091 45-330 (339)
266 TIGR02658 TTQ_MADH_Hv methylam 98.9 1.3E-05 2.8E-10 90.6 35.8 256 795-1059 27-338 (352)
267 PRK11138 outer membrane biogen 98.8 4.2E-06 9E-11 98.4 33.3 291 784-1093 68-393 (394)
268 PLN02919 haloacid dehalogenase 98.8 2.4E-06 5.2E-11 111.0 33.4 247 817-1094 571-888 (1057)
269 TIGR03300 assembly_YfgL outer 98.8 3.9E-06 8.3E-11 98.1 32.2 254 819-1093 61-337 (377)
270 PRK01029 tolB translocation pr 98.8 1.4E-06 3.1E-11 102.9 28.3 235 796-1076 166-426 (428)
271 COG5354 Uncharacterized protei 98.8 1.1E-06 2.5E-11 98.3 25.4 295 778-1094 37-395 (561)
272 PF00097 zf-C3HC4: Zinc finger 98.8 3.2E-09 7E-14 80.8 3.6 39 166-204 1-41 (41)
273 PF10282 Lactonase: Lactonase, 98.8 9.3E-06 2E-10 93.5 33.8 259 779-1072 42-345 (345)
274 KOG4547 WD40 repeat-containing 98.8 1E-06 2.2E-11 100.7 24.8 181 824-1052 6-221 (541)
275 KOG1409 Uncharacterized conser 98.8 3.2E-07 6.9E-12 98.0 18.6 233 845-1094 14-270 (404)
276 KOG1354 Serine/threonine prote 98.8 2.5E-07 5.4E-12 98.6 17.8 273 811-1093 23-358 (433)
277 KOG4497 Uncharacterized conser 98.8 2.9E-06 6.2E-11 90.1 25.4 245 779-1043 54-424 (447)
278 KOG0823 Predicted E3 ubiquitin 98.8 3E-09 6.4E-14 108.3 3.2 55 163-218 47-103 (230)
279 KOG0320 Predicted E3 ubiquitin 98.8 5.4E-09 1.2E-13 101.4 4.4 51 163-214 131-183 (187)
280 PLN02919 haloacid dehalogenase 98.8 4.3E-06 9.3E-11 108.7 32.0 240 785-1055 580-892 (1057)
281 PF13445 zf-RING_UBOX: RING-ty 98.8 4.2E-09 9.2E-14 79.6 2.6 36 166-202 1-43 (43)
282 KOG2041 WD40 repeat protein [G 98.7 7.3E-07 1.6E-11 102.5 20.2 270 811-1091 12-334 (1189)
283 PRK01029 tolB translocation pr 98.7 3E-06 6.4E-11 100.2 25.6 218 833-1093 165-402 (428)
284 KOG1912 WD40 repeat protein [G 98.7 5.9E-06 1.3E-10 96.5 26.0 303 785-1093 26-550 (1062)
285 PHA02929 N1R/p28-like protein; 98.7 1.2E-08 2.6E-13 107.3 4.0 47 162-209 173-227 (238)
286 PF13920 zf-C3HC4_3: Zinc fing 98.7 1.4E-08 3.1E-13 80.9 3.4 46 163-209 2-48 (50)
287 KOG4190 Uncharacterized conser 98.7 7E-08 1.5E-12 107.5 9.8 216 806-1059 728-956 (1034)
288 KOG0317 Predicted E3 ubiquitin 98.7 9.9E-09 2.1E-13 107.5 2.9 52 162-214 238-289 (293)
289 KOG4190 Uncharacterized conser 98.7 1.3E-07 2.9E-12 105.4 11.6 263 784-1090 746-1032(1034)
290 KOG4224 Armadillo repeat prote 98.6 4.4E-07 9.5E-12 97.5 14.7 260 322-608 175-445 (550)
291 PF13639 zf-RING_2: Ring finge 98.6 1.4E-08 2.9E-13 78.6 2.5 40 165-205 2-44 (44)
292 COG4946 Uncharacterized protei 98.6 2.6E-05 5.7E-10 86.6 27.6 150 784-969 331-483 (668)
293 PF05804 KAP: Kinesin-associat 98.6 3.1E-06 6.8E-11 103.1 22.3 273 326-636 261-541 (708)
294 COG2706 3-carboxymuconate cycl 98.6 3.4E-05 7.4E-10 84.0 27.5 223 832-1093 15-273 (346)
295 PF04762 IKI3: IKI3 family; I 98.6 3.6E-05 7.8E-10 98.3 32.0 274 812-1093 74-455 (928)
296 KOG2177 Predicted E3 ubiquitin 98.6 3E-08 6.4E-13 113.7 3.8 79 160-242 10-95 (386)
297 KOG0280 Uncharacterized conser 98.6 4.8E-07 1E-11 94.9 11.9 106 781-887 129-243 (339)
298 KOG2314 Translation initiation 98.6 7.7E-06 1.7E-10 92.4 22.0 288 778-1086 215-559 (698)
299 PF13360 PQQ_2: PQQ-like domai 98.6 5.4E-05 1.2E-09 82.1 28.6 215 831-1094 1-230 (238)
300 KOG0309 Conserved WD40 repeat- 98.5 6.1E-07 1.3E-11 103.7 13.2 270 779-1093 30-338 (1081)
301 COG2706 3-carboxymuconate cycl 98.5 0.00017 3.8E-09 78.7 31.1 279 794-1073 15-345 (346)
302 COG4946 Uncharacterized protei 98.5 0.0003 6.6E-09 78.4 32.6 209 864-1083 275-507 (668)
303 cd00162 RING RING-finger (Real 98.5 8.3E-08 1.8E-12 74.5 3.9 44 165-208 1-45 (45)
304 PF13360 PQQ_2: PQQ-like domai 98.5 7.9E-05 1.7E-09 80.8 28.6 225 794-1058 2-237 (238)
305 KOG2315 Predicted translation 98.5 4.7E-05 1E-09 86.8 26.3 261 814-1094 35-344 (566)
306 KOG3914 WD repeat protein WDR4 98.5 1.8E-06 3.9E-11 94.5 14.1 163 857-1059 64-231 (390)
307 PHA02926 zinc finger-like prot 98.5 9.7E-08 2.1E-12 96.3 3.3 48 162-209 169-230 (242)
308 KOG4224 Armadillo repeat prote 98.4 2.2E-05 4.8E-10 84.7 20.8 266 273-566 172-446 (550)
309 KOG4532 WD40-like repeat conta 98.4 3E-05 6.5E-10 80.6 20.8 228 817-1085 71-323 (344)
310 COG5170 CDC55 Serine/threonine 98.4 2.6E-06 5.6E-11 89.7 13.2 238 812-1094 25-309 (460)
311 KOG0311 Predicted E3 ubiquitin 98.4 3.6E-08 7.9E-13 105.5 -0.4 70 159-228 39-109 (381)
312 smart00184 RING Ring finger. E 98.4 2E-07 4.2E-12 69.8 3.7 39 166-204 1-39 (39)
313 PF11789 zf-Nse: Zinc-finger o 98.4 8.6E-08 1.9E-12 77.6 1.6 42 163-204 11-54 (57)
314 COG5170 CDC55 Serine/threonine 98.4 4.1E-06 8.8E-11 88.2 13.7 236 778-1050 31-366 (460)
315 PRK11138 outer membrane biogen 98.3 0.00025 5.3E-09 83.5 29.2 256 784-1050 119-393 (394)
316 PF14634 zf-RING_5: zinc-RING 98.3 3E-07 6.5E-12 70.9 3.1 41 165-206 1-44 (44)
317 KOG4532 WD40-like repeat conta 98.3 4.7E-05 1E-09 79.2 19.7 194 785-1020 84-290 (344)
318 PRK04043 tolB translocation pr 98.3 0.00016 3.6E-09 85.0 27.3 203 833-1085 169-388 (419)
319 TIGR00570 cdk7 CDK-activating 98.3 5.6E-07 1.2E-11 97.4 5.3 101 163-279 3-112 (309)
320 KOG2066 Vacuolar assembly/sort 98.3 1.5E-05 3.2E-10 94.2 16.8 181 813-1013 39-234 (846)
321 KOG0882 Cyclophilin-related pe 98.3 7.2E-06 1.6E-10 90.6 13.3 243 811-1093 7-304 (558)
322 KOG4714 Nucleoporin [Nuclear s 98.3 1.2E-05 2.6E-10 83.2 13.9 238 816-1092 39-316 (319)
323 PF15492 Nbas_N: Neuroblastoma 98.3 0.00036 7.7E-09 74.2 25.3 227 825-1094 10-259 (282)
324 COG5354 Uncharacterized protei 98.3 0.00026 5.6E-09 79.9 24.7 258 812-1093 31-347 (561)
325 PF00400 WD40: WD domain, G-be 98.3 2.9E-06 6.2E-11 63.7 6.7 38 846-883 2-39 (39)
326 KOG0309 Conserved WD40 repeat- 98.3 4.4E-06 9.6E-11 96.8 11.1 226 784-1052 81-340 (1081)
327 KOG3914 WD repeat protein WDR4 98.2 7.8E-06 1.7E-10 89.7 12.0 92 1002-1094 130-223 (390)
328 KOG2164 Predicted E3 ubiquitin 98.2 5.6E-07 1.2E-11 101.7 3.0 53 162-214 185-241 (513)
329 PF08450 SGL: SMP-30/Gluconola 98.2 0.0048 1.1E-07 67.4 33.9 225 818-1083 4-244 (246)
330 KOG2314 Translation initiation 98.2 0.00021 4.5E-09 81.2 22.8 258 815-1094 212-525 (698)
331 COG5574 PEX10 RING-finger-cont 98.2 6.7E-07 1.4E-11 92.8 2.4 52 161-212 213-265 (271)
332 PF07433 DUF1513: Protein of u 98.2 0.0026 5.7E-08 69.7 29.3 238 817-1084 8-276 (305)
333 KOG1832 HIV-1 Vpr-binding prot 98.1 1.7E-06 3.6E-11 101.8 4.6 217 805-1081 1093-1318(1516)
334 PF04762 IKI3: IKI3 family; I 98.1 0.00086 1.9E-08 86.0 29.4 267 814-1093 22-332 (928)
335 PF00400 WD40: WD domain, G-be 98.1 6.2E-06 1.4E-10 61.8 6.1 39 1053-1092 1-39 (39)
336 KOG2695 WD40 repeat protein [G 98.1 5E-06 1.1E-10 89.0 7.5 154 827-1022 228-386 (425)
337 KOG4649 PQQ (pyrrolo-quinoline 98.1 0.0047 1E-07 64.5 28.5 294 786-1094 24-351 (354)
338 cd00216 PQQ_DH Dehydrogenases 98.1 0.003 6.5E-08 76.3 31.8 121 947-1077 303-450 (488)
339 PRK04043 tolB translocation pr 98.1 0.0019 4.1E-08 76.1 29.1 193 814-1053 188-402 (419)
340 KOG0978 E3 ubiquitin ligase in 98.1 1E-06 2.2E-11 104.8 1.7 52 163-214 643-694 (698)
341 PF08450 SGL: SMP-30/Gluconola 98.1 0.0039 8.4E-08 68.2 29.8 208 784-1032 11-233 (246)
342 KOG1645 RING-finger-containing 98.1 0.00011 2.4E-09 80.5 16.7 80 806-888 186-269 (463)
343 PF05804 KAP: Kinesin-associat 98.1 0.00053 1.1E-08 84.1 24.5 366 265-674 121-503 (708)
344 KOG4159 Predicted E3 ubiquitin 98.0 2.7E-06 5.8E-11 96.4 3.7 74 156-230 77-154 (398)
345 KOG4714 Nucleoporin [Nuclear s 98.0 2.5E-05 5.4E-10 80.9 10.1 143 943-1093 99-253 (319)
346 KOG2660 Locus-specific chromos 98.0 2.8E-06 6.1E-11 91.1 3.0 65 162-227 14-82 (331)
347 KOG1275 PAB-dependent poly(A) 98.0 7.2E-05 1.6E-09 89.4 14.5 143 941-1092 183-340 (1118)
348 KOG1912 WD40 repeat protein [G 98.0 0.00058 1.2E-08 80.4 21.4 239 812-1092 14-302 (1062)
349 PF12678 zf-rbx1: RING-H2 zinc 98.0 4.7E-06 1E-10 71.9 3.4 39 166-205 22-73 (73)
350 KOG2114 Vacuolar assembly/sort 98.0 0.0012 2.7E-08 79.0 24.3 213 815-1069 27-261 (933)
351 KOG4642 Chaperone-dependent E3 98.0 6.7E-06 1.4E-10 84.5 4.2 78 156-234 204-281 (284)
352 KOG2695 WD40 repeat protein [G 97.9 2.8E-05 6.1E-10 83.5 8.7 149 922-1073 239-401 (425)
353 PF11768 DUF3312: Protein of u 97.9 0.002 4.3E-08 75.1 23.7 85 1007-1094 239-329 (545)
354 COG5222 Uncharacterized conser 97.9 1.1E-05 2.4E-10 84.0 4.9 67 164-231 275-343 (427)
355 KOG0166 Karyopherin (importin) 97.9 0.00035 7.5E-09 81.3 17.4 232 271-520 113-355 (514)
356 KOG3621 WD40 repeat-containing 97.9 0.0016 3.4E-08 76.8 22.2 272 775-1052 35-354 (726)
357 KOG1275 PAB-dependent poly(A) 97.9 0.00022 4.7E-09 85.4 15.2 185 784-1011 146-341 (1118)
358 KOG2114 Vacuolar assembly/sort 97.8 0.0032 7E-08 75.6 24.2 216 778-1035 28-266 (933)
359 PF06433 Me-amine-dh_H: Methyl 97.8 0.013 2.9E-07 65.1 26.9 223 833-1060 17-329 (342)
360 KOG3617 WD40 and TPR repeat-co 97.8 0.00078 1.7E-08 79.8 17.9 277 794-1081 40-372 (1416)
361 KOG0297 TNF receptor-associate 97.8 1.3E-05 2.7E-10 92.7 3.3 68 160-228 18-86 (391)
362 KOG1002 Nucleotide excision re 97.8 7.1E-06 1.5E-10 91.6 0.9 50 162-211 535-588 (791)
363 KOG0824 Predicted E3 ubiquitin 97.8 1.2E-05 2.6E-10 84.9 2.2 52 163-214 7-58 (324)
364 PF15492 Nbas_N: Neuroblastoma 97.7 0.0095 2.1E-07 63.6 22.5 223 781-1021 5-268 (282)
365 cd00216 PQQ_DH Dehydrogenases 97.7 0.021 4.5E-07 69.1 28.9 264 821-1093 59-423 (488)
366 PF12861 zf-Apc11: Anaphase-pr 97.6 3.2E-05 6.9E-10 67.0 2.8 45 166-210 35-83 (85)
367 KOG3621 WD40 repeat-containing 97.6 0.0049 1.1E-07 72.7 21.4 112 815-934 37-153 (726)
368 KOG0166 Karyopherin (importin) 97.6 0.0008 1.7E-08 78.3 14.7 261 275-541 159-464 (514)
369 KOG0882 Cyclophilin-related pe 97.6 0.00041 8.9E-09 77.1 11.7 227 785-1021 20-314 (558)
370 PF07433 DUF1513: Protein of u 97.6 0.022 4.8E-07 62.6 24.9 199 819-1048 56-282 (305)
371 KOG1920 IkappaB kinase complex 97.6 0.013 2.8E-07 73.2 25.2 230 813-1053 68-324 (1265)
372 KOG1813 Predicted E3 ubiquitin 97.5 3.3E-05 7.2E-10 81.4 1.8 47 163-210 241-287 (313)
373 COG5152 Uncharacterized conser 97.5 4.2E-05 9.2E-10 75.2 2.2 47 163-210 196-242 (259)
374 PF04826 Arm_2: Armadillo-like 97.5 0.0045 9.8E-08 67.2 18.0 186 315-516 14-205 (254)
375 KOG2879 Predicted E3 ubiquitin 97.5 9.4E-05 2E-09 77.2 4.3 47 163-209 239-287 (298)
376 PF00780 CNH: CNH domain; Int 97.5 0.075 1.6E-06 59.0 28.1 228 821-1060 5-264 (275)
377 KOG2066 Vacuolar assembly/sort 97.5 0.0042 9.2E-08 74.2 18.3 176 782-965 46-235 (846)
378 PF04053 Coatomer_WDAD: Coatom 97.4 0.045 9.7E-07 64.6 25.8 215 849-1093 26-261 (443)
379 KOG4649 PQQ (pyrrolo-quinoline 97.4 0.065 1.4E-06 56.3 23.3 102 784-887 62-167 (354)
380 KOG1645 RING-finger-containing 97.4 0.004 8.6E-08 68.8 15.2 245 773-1051 193-461 (463)
381 PF00930 DPPIV_N: Dipeptidyl p 97.4 0.053 1.1E-06 62.7 25.8 272 793-1083 21-346 (353)
382 KOG0802 E3 ubiquitin ligase [P 97.3 7.6E-05 1.6E-09 90.7 1.7 46 162-208 290-340 (543)
383 KOG1832 HIV-1 Vpr-binding prot 97.3 0.00015 3.2E-09 86.1 3.8 191 846-1093 1092-1290(1516)
384 PF11768 DUF3312: Protein of u 97.3 0.003 6.5E-08 73.6 14.0 74 811-888 257-332 (545)
385 PF08596 Lgl_C: Lethal giant l 97.3 0.13 2.8E-06 59.9 27.2 271 778-1084 6-326 (395)
386 PRK02888 nitrous-oxide reducta 97.2 0.019 4.2E-07 68.7 19.7 203 863-1083 200-450 (635)
387 PF08553 VID27: VID27 cytoplas 97.2 0.013 2.8E-07 72.6 18.4 131 952-1092 501-645 (794)
388 KOG1920 IkappaB kinase complex 97.1 0.055 1.2E-06 67.9 23.1 228 855-1093 68-321 (1265)
389 COG5276 Uncharacterized conser 97.1 0.57 1.2E-05 50.5 27.4 263 813-1093 86-368 (370)
390 KOG1008 Uncharacterized conser 97.1 0.00013 2.9E-09 84.2 0.5 197 813-1051 56-275 (783)
391 PF08596 Lgl_C: Lethal giant l 97.1 0.15 3.2E-06 59.5 25.0 223 857-1093 3-289 (395)
392 COG5243 HRD1 HRD ubiquitin lig 97.1 0.00038 8.1E-09 75.2 3.3 46 162-208 286-344 (491)
393 PRK02888 nitrous-oxide reducta 97.0 0.1 2.2E-06 62.7 23.2 97 992-1093 287-403 (635)
394 KOG4367 Predicted Zn-finger pr 96.9 0.00035 7.7E-09 76.5 1.2 35 161-195 2-36 (699)
395 PF04841 Vps16_N: Vps16, N-ter 96.9 0.52 1.1E-05 55.5 27.8 209 834-1051 62-287 (410)
396 PF03178 CPSF_A: CPSF A subuni 96.9 0.16 3.4E-06 57.9 22.8 130 955-1093 62-201 (321)
397 KOG4628 Predicted E3 ubiquitin 96.9 0.00064 1.4E-08 75.3 2.9 48 164-211 230-280 (348)
398 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.8 1.1 2.3E-05 54.8 30.7 59 1004-1062 441-501 (527)
399 PF00780 CNH: CNH domain; Int 96.8 0.47 1E-05 52.6 25.9 227 784-1023 6-266 (275)
400 PF06977 SdiA-regulated: SdiA- 96.8 0.89 1.9E-05 49.4 26.5 208 808-1048 16-247 (248)
401 smart00320 WD40 WD40 repeats. 96.7 0.0038 8.2E-08 44.7 5.5 38 846-883 3-40 (40)
402 KOG2042 Ubiquitin fusion degra 96.7 0.0016 3.5E-08 80.4 5.2 73 157-231 864-937 (943)
403 KOG3617 WD40 and TPR repeat-co 96.7 0.0036 7.8E-08 74.5 7.7 106 986-1093 20-130 (1416)
404 COG0823 TolB Periplasmic compo 96.7 0.081 1.8E-06 62.2 18.6 183 854-1082 191-387 (425)
405 KOG1008 Uncharacterized conser 96.7 0.00083 1.8E-08 77.9 2.1 185 787-1012 72-275 (783)
406 KOG2160 Armadillo/beta-catenin 96.6 0.024 5.1E-07 62.9 13.1 171 436-614 115-287 (342)
407 KOG4172 Predicted E3 ubiquitin 96.6 0.0004 8.7E-09 53.6 -0.4 45 164-208 8-53 (62)
408 PF02897 Peptidase_S9_N: Proly 96.6 2.3 5E-05 50.3 31.9 221 816-1079 126-385 (414)
409 COG5540 RING-finger-containing 96.6 0.0013 2.7E-08 69.6 2.9 47 164-210 324-373 (374)
410 COG5064 SRP1 Karyopherin (impo 96.6 0.028 6.1E-07 61.0 12.9 223 302-538 150-418 (526)
411 COG3386 Gluconolactonase [Carb 96.6 0.55 1.2E-05 52.7 23.6 223 825-1083 39-274 (307)
412 COG0823 TolB Periplasmic compo 96.5 0.16 3.4E-06 59.8 20.1 179 810-1034 189-380 (425)
413 KOG4441 Proteins containing BT 96.5 0.16 3.4E-06 62.4 20.7 226 785-1054 285-549 (571)
414 smart00320 WD40 WD40 repeats. 96.5 0.0062 1.3E-07 43.5 5.5 38 1054-1092 3-40 (40)
415 cd00020 ARM Armadillo/beta-cat 96.5 0.011 2.5E-07 56.0 8.6 116 387-514 3-118 (120)
416 cd00020 ARM Armadillo/beta-cat 96.5 0.014 3.1E-07 55.3 9.1 100 440-547 2-101 (120)
417 KOG4640 Anaphase-promoting com 96.4 0.013 2.8E-07 68.5 9.9 91 813-906 20-113 (665)
418 KOG0826 Predicted E3 ubiquitin 96.4 0.0028 6.2E-08 68.1 3.8 55 158-213 295-350 (357)
419 PF10508 Proteasom_PSMB: Prote 96.4 0.23 4.9E-06 60.2 20.7 230 318-570 81-323 (503)
420 COG5064 SRP1 Karyopherin (impo 96.4 0.064 1.4E-06 58.3 13.8 80 439-518 151-232 (526)
421 PF03178 CPSF_A: CPSF A subuni 96.4 1.4 3.1E-05 50.1 26.3 208 833-1048 2-262 (321)
422 PRK09687 putative lyase; Provi 96.3 0.26 5.6E-06 54.8 19.0 223 315-610 25-251 (280)
423 COG3391 Uncharacterized conser 96.3 3.4 7.4E-05 48.2 29.8 234 815-1092 32-281 (381)
424 KOG2395 Protein involved in va 96.2 0.044 9.5E-07 62.9 12.4 132 948-1090 349-496 (644)
425 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.2 3.5 7.5E-05 50.3 29.7 100 785-888 69-192 (527)
426 PHA02713 hypothetical protein; 96.2 0.22 4.7E-06 61.2 19.5 216 819-1054 299-536 (557)
427 PF14783 BBS2_Mid: Ciliary BBS 96.1 0.37 8.1E-06 44.8 15.8 100 984-1090 2-110 (111)
428 PF00930 DPPIV_N: Dipeptidyl p 96.0 0.61 1.3E-05 53.9 21.3 241 832-1084 22-301 (353)
429 KOG0804 Cytoplasmic Zn-finger 96.0 0.0032 7E-08 70.4 1.9 44 163-209 175-222 (493)
430 COG3490 Uncharacterized protei 96.0 0.95 2.1E-05 48.7 19.8 240 818-1091 72-345 (366)
431 KOG3039 Uncharacterized conser 96.0 0.005 1.1E-07 63.2 3.0 52 162-214 220-275 (303)
432 COG3391 Uncharacterized conser 95.8 2.3 5E-05 49.7 24.8 216 780-1034 80-309 (381)
433 PF04641 Rtf2: Rtf2 RING-finge 95.8 0.007 1.5E-07 66.4 3.6 64 162-227 112-182 (260)
434 PF06977 SdiA-regulated: SdiA- 95.7 3.9 8.5E-05 44.4 24.9 202 849-1091 15-247 (248)
435 KOG2079 Vacuolar assembly/sort 95.6 0.26 5.6E-06 61.4 16.1 75 813-888 89-163 (1206)
436 PF04841 Vps16_N: Vps16, N-ter 95.6 5.4 0.00012 47.0 27.1 84 989-1076 186-271 (410)
437 PHA02713 hypothetical protein; 95.6 0.73 1.6E-05 56.6 20.5 86 1005-1093 433-532 (557)
438 PF06433 Me-amine-dh_H: Methyl 95.6 3.2 7E-05 46.6 23.3 225 779-1022 41-330 (342)
439 PF04053 Coatomer_WDAD: Coatom 95.6 0.78 1.7E-05 54.3 19.6 166 786-963 80-262 (443)
440 KOG1734 Predicted RING-contain 95.5 0.0025 5.3E-08 66.4 -1.1 52 163-214 224-286 (328)
441 PF02897 Peptidase_S9_N: Proly 95.5 7.2 0.00016 46.0 29.3 237 778-1056 128-409 (414)
442 KOG4199 Uncharacterized conser 95.5 1.8 3.9E-05 47.6 20.0 271 322-610 115-404 (461)
443 KOG1039 Predicted E3 ubiquitin 95.5 0.0076 1.6E-07 67.4 2.4 49 161-209 159-221 (344)
444 KOG4441 Proteins containing BT 95.5 0.73 1.6E-05 56.6 19.6 215 825-1087 287-534 (571)
445 KOG4692 Predicted E3 ubiquitin 95.4 0.0074 1.6E-07 65.0 2.0 48 162-210 421-468 (489)
446 PF08553 VID27: VID27 cytoplas 95.4 0.29 6.4E-06 61.0 15.9 141 826-1011 497-646 (794)
447 KOG2444 WD40 repeat protein [G 95.3 0.051 1.1E-06 56.4 7.3 100 785-886 70-178 (238)
448 PRK13800 putative oxidoreducta 95.2 0.5 1.1E-05 61.6 18.2 241 315-605 623-895 (897)
449 PF12234 Rav1p_C: RAVE protein 95.2 0.41 8.8E-06 58.3 15.9 126 856-1012 30-156 (631)
450 PRK09687 putative lyase; Provi 95.2 1.2 2.6E-05 49.6 18.6 221 311-604 52-277 (280)
451 PF05694 SBP56: 56kDa selenium 95.2 1.9 4.1E-05 49.7 19.9 111 984-1094 183-342 (461)
452 KOG0825 PHD Zn-finger protein 95.1 0.0047 1E-07 72.9 -0.7 48 163-211 123-173 (1134)
453 PF14783 BBS2_Mid: Ciliary BBS 95.1 0.53 1.1E-05 43.8 12.7 89 786-880 16-109 (111)
454 COG3386 Gluconolactonase [Carb 95.0 4.2 9.1E-05 45.7 22.3 208 787-1033 39-264 (307)
455 KOG1897 Damage-specific DNA bi 95.0 14 0.00031 46.4 31.5 107 983-1091 776-895 (1096)
456 COG5113 UFD2 Ubiquitin fusion 95.0 0.036 7.9E-07 64.4 5.8 75 157-233 848-923 (929)
457 PF04826 Arm_2: Armadillo-like 94.8 0.91 2E-05 49.5 16.0 210 266-497 11-229 (254)
458 COG3490 Uncharacterized protei 94.8 0.51 1.1E-05 50.6 13.1 211 820-1050 120-347 (366)
459 KOG0828 Predicted E3 ubiquitin 94.7 0.016 3.5E-07 65.3 2.1 49 162-210 570-635 (636)
460 KOG4640 Anaphase-promoting com 94.7 0.13 2.9E-06 60.5 9.4 91 982-1074 21-115 (665)
461 PRK13616 lipoprotein LpqB; Pro 94.7 3.4 7.4E-05 50.9 22.1 198 853-1089 347-563 (591)
462 KOG3039 Uncharacterized conser 94.7 0.021 4.6E-07 58.8 2.6 39 157-195 37-75 (303)
463 TIGR03074 PQQ_membr_DH membran 94.5 12 0.00025 47.7 26.8 213 823-1059 194-485 (764)
464 PF14583 Pectate_lyase22: Olig 94.5 12 0.00025 43.1 25.7 91 779-871 41-140 (386)
465 PRK13616 lipoprotein LpqB; Pro 94.4 2.8 6.2E-05 51.6 20.8 191 813-1048 349-565 (591)
466 KOG2160 Armadillo/beta-catenin 94.4 0.99 2.2E-05 50.4 15.0 188 279-517 94-283 (342)
467 KOG1001 Helicase-like transcri 94.4 0.0089 1.9E-07 73.4 -1.0 49 164-213 455-504 (674)
468 COG5194 APC11 Component of SCF 94.3 0.038 8.2E-07 46.7 2.9 44 165-209 33-81 (88)
469 KOG1785 Tyrosine kinase negati 94.3 0.017 3.6E-07 63.3 1.0 48 165-212 371-419 (563)
470 PF07995 GSDH: Glucose / Sorbo 94.3 13 0.00027 42.6 24.7 73 1017-1089 246-330 (331)
471 PF14570 zf-RING_4: RING/Ubox 94.3 0.027 5.8E-07 43.6 1.8 43 166-208 1-47 (48)
472 PF15390 DUF4613: Domain of un 94.2 11 0.00025 44.8 23.4 133 811-951 54-219 (671)
473 KOG3800 Predicted E3 ubiquitin 94.1 0.032 6.9E-07 59.5 2.6 49 165-213 2-55 (300)
474 KOG1222 Kinesin associated pro 94.0 0.29 6.3E-06 55.6 9.9 178 326-521 275-459 (791)
475 KOG4265 Predicted E3 ubiquitin 94.0 0.033 7.1E-07 61.4 2.5 47 163-210 290-337 (349)
476 PHA03098 kelch-like protein; P 93.9 2.2 4.8E-05 52.3 18.8 65 823-889 295-370 (534)
477 KOG2079 Vacuolar assembly/sort 93.8 0.16 3.5E-06 63.1 8.1 98 783-884 97-202 (1206)
478 KOG2395 Protein involved in va 93.7 0.64 1.4E-05 53.9 12.1 145 825-1012 348-500 (644)
479 KOG1916 Nuclear protein, conta 93.6 0.013 2.9E-07 70.5 -1.3 87 795-884 153-264 (1283)
480 PF14447 Prok-RING_4: Prokaryo 93.6 0.042 9E-07 43.5 1.8 47 163-212 7-53 (55)
481 KOG1897 Damage-specific DNA bi 93.6 11 0.00024 47.4 22.8 144 937-1090 831-1000(1096)
482 KOG2280 Vacuolar assembly/sort 93.6 3.2 7E-05 50.4 18.0 204 812-1034 42-270 (829)
483 KOG1571 Predicted E3 ubiquitin 93.5 0.04 8.7E-07 60.8 2.1 48 158-209 300-347 (355)
484 PF05096 Glu_cyclase_2: Glutam 93.5 13 0.00028 40.4 21.0 119 935-1060 44-166 (264)
485 KOG2817 Predicted E3 ubiquitin 93.3 0.058 1.3E-06 60.2 3.0 45 162-206 333-382 (394)
486 KOG1048 Neural adherens juncti 93.2 1.5 3.2E-05 53.6 14.7 203 328-538 388-658 (717)
487 KOG2444 WD40 repeat protein [G 93.0 0.21 4.6E-06 52.0 6.3 136 948-1093 33-176 (238)
488 KOG4185 Predicted E3 ubiquitin 93.0 0.078 1.7E-06 59.7 3.6 64 163-227 3-77 (296)
489 KOG1048 Neural adherens juncti 92.9 0.42 9.2E-06 58.2 9.7 156 309-470 514-679 (717)
490 KOG4275 Predicted E3 ubiquitin 92.9 0.02 4.2E-07 60.6 -1.3 42 163-209 300-342 (350)
491 PF00514 Arm: Armadillo/beta-c 92.9 0.13 2.9E-06 38.8 3.6 39 434-472 1-39 (41)
492 KOG3161 Predicted E3 ubiquitin 92.7 0.046 9.9E-07 63.7 1.1 58 163-225 11-77 (861)
493 KOG1493 Anaphase-promoting com 92.7 0.038 8.2E-07 46.3 0.3 47 163-209 31-81 (84)
494 KOG0827 Predicted E3 ubiquitin 92.6 0.082 1.8E-06 58.3 2.9 52 163-214 4-61 (465)
495 PHA03098 kelch-like protein; P 92.5 5.9 0.00013 48.6 19.5 107 782-890 292-419 (534)
496 KOG4499 Ca2+-binding protein R 92.4 15 0.00033 38.7 18.5 47 987-1034 217-264 (310)
497 KOG2979 Protein involved in DN 92.2 0.12 2.6E-06 54.4 3.5 43 163-205 176-220 (262)
498 PHA02790 Kelch-like protein; P 92.2 6.7 0.00015 47.4 19.0 103 784-888 271-387 (480)
499 PF12894 Apc4_WD40: Anaphase-p 92.0 0.37 7.9E-06 37.6 5.1 31 1064-1094 11-41 (47)
500 KOG2122 Beta-catenin-binding p 91.8 0.99 2.2E-05 58.0 11.0 176 328-515 365-558 (2195)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.3e-40 Score=346.20 Aligned_cols=306 Identities=20% Similarity=0.304 Sum_probs=268.3
Q ss_pred HHHhhhccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCc
Q 001349 769 MKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI 844 (1094)
Q Consensus 769 ~~~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~ 844 (1094)
+.+|.+.+-...|+++|.++++|+.|.++|+||.. +...+..+|...|.|++|+|| .||||+.||+|++||..++.
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~ 190 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ 190 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCC
Confidence 34566667778899999999999999999999987 678889999999999999998 99999999999999999885
Q ss_pred ceeEEEecccCCCeEEEEEec-----CCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCe
Q 001349 845 LHLIQQIREHTKAVTGLAILQ-----SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAG 919 (1094)
Q Consensus 845 ~~~~~~l~~H~~~V~sv~fsp-----dg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~ 919 (1094)
.....+.+|...|++++|.| ..++|+++|.||+|+|||+..+. .......|..+|+++.|.+. .+
T Consensus 191 -~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~-~~~~lsgHT~~VTCvrwGG~--------gl 260 (480)
T KOG0271|consen 191 -QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT-CVRTLSGHTASVTCVRWGGE--------GL 260 (480)
T ss_pred -cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce-EEEEeccCccceEEEEEcCC--------ce
Confidence 46678999999999999976 56799999999999999999874 33444567889999985433 25
Q ss_pred EEEEEeCCeEEEEcC------------CCCceEEEEe-------------C-------------------------CEEE
Q 001349 920 IKVHLRNGKTKLLNS------------SKYPKCLALV-------------Q-------------------------GKVY 949 (1094)
Q Consensus 920 l~~~~~~g~i~l~~~------------~~~v~~l~~s-------------~-------------------------~~l~ 949 (1094)
+..++.|+++++|+. ..+|+.++.+ + .+++
T Consensus 261 iySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlV 340 (480)
T KOG0271|consen 261 IYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLV 340 (480)
T ss_pred EEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeE
Confidence 567778899999974 3456666655 1 2499
Q ss_pred EEEcCCeEEEEECCCCc-eeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEE
Q 001349 950 CGCQDGAIQEIDLATGT-FATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVR 1027 (1094)
Q Consensus 950 sgs~Dg~I~iwDl~~~~-~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~ 1027 (1094)
+|+.|.++.+|+....+ ++ .++.+|..-|+.+.|+||+.++++++.|. .|++||.++|+.+.+|. |-..|.
T Consensus 341 SgsDd~tlflW~p~~~kkpi------~rmtgHq~lVn~V~fSPd~r~IASaSFDk-SVkLW~g~tGk~lasfRGHv~~VY 413 (480)
T KOG0271|consen 341 SGSDDFTLFLWNPFKSKKPI------TRMTGHQALVNHVSFSPDGRYIASASFDK-SVKLWDGRTGKFLASFRGHVAAVY 413 (480)
T ss_pred EecCCceEEEecccccccch------hhhhchhhheeeEEECCCccEEEEeeccc-ceeeeeCCCcchhhhhhhccceeE
Confidence 99999999999976554 33 57789999999999999999999999995 99999999999999999 779999
Q ss_pred EEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1028 AMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1028 ~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
.++|+.| ++++||.|.+++|||+++.+....+ .||.+.|.++.|+|||..+++|+.|..+++|.
T Consensus 414 qvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DL-pGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 414 QVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDL-PGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEEeccCccEEEEcCCCceEEEEEeeeeeecccC-CCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 9999999 8999999999999999999999999 69999999999999999999999999999995
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.9e-39 Score=345.01 Aligned_cols=272 Identities=19% Similarity=0.310 Sum_probs=250.4
Q ss_pred ccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC----EEEEEECCCeEEEEecCCCcceeE
Q 001349 775 LRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD----KIFSGHSDGTIKVWTGRGSILHLI 848 (1094)
Q Consensus 775 ~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd----~LaSgs~Dg~I~vWd~~t~~~~~~ 848 (1094)
.+..+.|+.|+..|+|||.+|.++||+.. ...+++.+|++.|.++.|+|. .++||+.||+|++|++.+. .++
T Consensus 177 Pis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e--~~l 254 (459)
T KOG0272|consen 177 PISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE--TPL 254 (459)
T ss_pred cceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC--cch
Confidence 34467788899999999999999999998 567889999999999999994 8999999999999999998 789
Q ss_pred EEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCe
Q 001349 849 QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGK 928 (1094)
Q Consensus 849 ~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~ 928 (1094)
..+.+|...|..++|+|+|++|+|+|.|.+-++||+.++. ..+....|...|.+++ |.|||..
T Consensus 255 ~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~-ElL~QEGHs~~v~~ia-------f~~DGSL--------- 317 (459)
T KOG0272|consen 255 QDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKS-ELLLQEGHSKGVFSIA-------FQPDGSL--------- 317 (459)
T ss_pred hhhhcchhhheeeeecCCCceeeecccccchhhcccccch-hhHhhcccccccceeE-------ecCCCce---------
Confidence 9999999999999999999999999999999999999975 4444456778888888 8888875
Q ss_pred EEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEE
Q 001349 929 TKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKM 1008 (1094)
Q Consensus 929 i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~i 1008 (1094)
+++|+.|..-++||+++|.++ ..+.+|..+|.+|.|+|+|..+++|+.|+ +++|
T Consensus 318 -------------------~~tGGlD~~~RvWDlRtgr~i------m~L~gH~k~I~~V~fsPNGy~lATgs~Dn-t~kV 371 (459)
T KOG0272|consen 318 -------------------AATGGLDSLGRVWDLRTGRCI------MFLAGHIKEILSVAFSPNGYHLATGSSDN-TCKV 371 (459)
T ss_pred -------------------eeccCccchhheeecccCcEE------EEecccccceeeEeECCCceEEeecCCCC-cEEE
Confidence 788999999999999999998 56678999999999999999999999997 9999
Q ss_pred EECCCCeEEEEec-CCCCEEEEEEeCC---EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeC
Q 001349 1009 WSTSNYNMVGSLP-TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTS 1084 (1094)
Q Consensus 1009 wd~~~~~~~~~~~-~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~ 1084 (1094)
||++..+.+.+++ |..-|+.+.|+|. ++++++.|++++||...++.+++++ .||.+.|.++++++|+.+++|++.
T Consensus 372 WDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksL-aGHe~kV~s~Dis~d~~~i~t~s~ 450 (459)
T KOG0272|consen 372 WDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSL-AGHEGKVISLDISPDSQAIATSSF 450 (459)
T ss_pred eeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhh-cCCccceEEEEeccCCceEEEecc
Confidence 9999999988888 7888999999985 8999999999999999999999999 699999999999999999999999
Q ss_pred CCcEEEEe
Q 001349 1085 DGRIQAWG 1092 (1094)
Q Consensus 1085 DG~I~iWd 1092 (1094)
|.+|++|.
T Consensus 451 DRT~KLW~ 458 (459)
T KOG0272|consen 451 DRTIKLWR 458 (459)
T ss_pred Cceeeecc
Confidence 99999995
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.5e-37 Score=322.86 Aligned_cols=278 Identities=19% Similarity=0.312 Sum_probs=248.4
Q ss_pred cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 001349 804 ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARV 881 (1094)
Q Consensus 804 ~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~v 881 (1094)
.+...+.||.++|.|+.|+|+ .|+||+.|.++|+||+.+. .+..+.++|...|.|++|+|||+.||||+.||+|++
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te--Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~l 183 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE--TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRL 183 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCC--CcceeecCCccEEEEEEECCCcchhhccccCCeEEE
Confidence 456678899999999999997 9999999999999999999 899999999999999999999999999999999999
Q ss_pred EECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC------------CCCceEEEEe-CCEE
Q 001349 882 WSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS------------SKYPKCLALV-QGKV 948 (1094)
Q Consensus 882 Wdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~------------~~~v~~l~~s-~~~l 948 (1094)
||..+|+..-.....|+..|.+++|.+-. ..|..+.++..+.||.+++|+. +..|+|+.+- +|.+
T Consensus 184 wdpktg~~~g~~l~gH~K~It~Lawep~h--l~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gli 261 (480)
T KOG0271|consen 184 WDPKTGQQIGRALRGHKKWITALAWEPLH--LVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLI 261 (480)
T ss_pred ecCCCCCcccccccCcccceeEEeecccc--cCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceE
Confidence 99999986666667889999999976643 4678889999999999999984 5679999998 6889
Q ss_pred EEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEe-----------CCcc-----------------------
Q 001349 949 YCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVH-----------NGLV----------------------- 994 (1094)
Q Consensus 949 ~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs-----------~~~~----------------------- 994 (1094)
++|+.|++|++|+...|.+. +.+.||...|+.++.+ +.+.
T Consensus 262 ySgS~DrtIkvw~a~dG~~~------r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~ 335 (480)
T KOG0271|consen 262 YSGSQDRTIKVWRALDGKLC------RELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDS 335 (480)
T ss_pred EecCCCceEEEEEccchhHH------HhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccC
Confidence 99999999999999999887 6778888899988876 2222
Q ss_pred --EEEEEECCCCEEEEEECCC-CeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceE
Q 001349 995 --YTASTSLDGAAVKMWSTSN-YNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQ 1068 (1094)
Q Consensus 995 --~las~s~Dg~~I~iwd~~~-~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~ 1068 (1094)
.+++++.|. ++.+|+... .+++..+. |..-|+.+.|||| +++++|.|..|++||..+|+.+.+| .||-+.|.
T Consensus 336 ~erlVSgsDd~-tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasf-RGHv~~VY 413 (480)
T KOG0271|consen 336 GERLVSGSDDF-TLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASF-RGHVAAVY 413 (480)
T ss_pred cceeEEecCCc-eEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhh-hhccceeE
Confidence 388988775 999999764 44666665 7788999999999 8999999999999999999999999 69999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1069 CMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1069 ~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
.++||.|.++|++|+.|.++++|++
T Consensus 414 qvawsaDsRLlVS~SkDsTLKvw~V 438 (480)
T KOG0271|consen 414 QVAWSADSRLLVSGSKDSTLKVWDV 438 (480)
T ss_pred EEEeccCccEEEEcCCCceEEEEEe
Confidence 9999999999999999999999997
No 4
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-33 Score=288.28 Aligned_cols=283 Identities=18% Similarity=0.277 Sum_probs=236.9
Q ss_pred HHhhhccccccccc-cCcEEEEeeCCCCeEEEeCC-------cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEe
Q 001349 770 KGLRELRKYSPLAF-EMVKVLSNGHDSSADFWNHR-------ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWT 839 (1094)
Q Consensus 770 ~~~~~~~~~~~~~~-d~~~l~s~s~dg~I~vWd~~-------~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd 839 (1094)
++|...+....... +...+++++.|.++.+|+.. .....+.||...|..+..++| +.++++.||++++||
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWD 91 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWD 91 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEE
Confidence 34444444334443 36689999999999999876 356778899999999999997 999999999999999
Q ss_pred cCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCe
Q 001349 840 GRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAG 919 (1094)
Q Consensus 840 ~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~ 919 (1094)
+.++ +..+.|.+|+..|.+++|++|.+.++|||.|+||++||+.++....+....+.+.|.++. |+|+...
T Consensus 92 l~~g--~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvr-------fsP~~~~ 162 (315)
T KOG0279|consen 92 LATG--ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVR-------FSPNESN 162 (315)
T ss_pred ecCC--cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEE-------EcCCCCC
Confidence 9999 789999999999999999999999999999999999999886433333333356666666 6665421
Q ss_pred EEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEE
Q 001349 920 IKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTAST 999 (1094)
Q Consensus 920 l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~ 999 (1094)
-.|++++.|++|++||+++-+.. ..+.||.+.++.++++|||..+++|
T Consensus 163 --------------------------p~Ivs~s~DktvKvWnl~~~~l~------~~~~gh~~~v~t~~vSpDGslcasG 210 (315)
T KOG0279|consen 163 --------------------------PIIVSASWDKTVKVWNLRNCQLR------TTFIGHSGYVNTVTVSPDGSLCASG 210 (315)
T ss_pred --------------------------cEEEEccCCceEEEEccCCcchh------hccccccccEEEEEECCCCCEEecC
Confidence 14899999999999999988876 6778899999999999999999999
Q ss_pred ECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC-EEEEEEcCCeEEEEECCCCcEEEEecccCC--------cceEEE
Q 001349 1000 SLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQTGTS--------GKVQCM 1070 (1094)
Q Consensus 1000 s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~--------~~I~~l 1070 (1094)
+.|| .+.+||++.++.+.++.+...|.+++|+|+ +.+++..+..|+|||+.++.++..+...-. -...++
T Consensus 211 gkdg-~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clsl 289 (315)
T KOG0279|consen 211 GKDG-EAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSL 289 (315)
T ss_pred CCCc-eEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEE
Confidence 9997 999999999999999999999999999999 666666667799999999988877642211 135788
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1071 ALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1071 ~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
+||+||..|++|-.||.|++|.+.
T Consensus 290 aws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 290 AWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEcCCCcEEEeeecCCcEEEEEee
Confidence 999999999999999999999873
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.1e-31 Score=272.85 Aligned_cols=281 Identities=16% Similarity=0.300 Sum_probs=247.7
Q ss_pred HHHHHhhhccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCC
Q 001349 767 DIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRG 842 (1094)
Q Consensus 767 ~~~~~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t 842 (1094)
.++++|..-+....++.|.+++++++.||.+.|||.- ...+.+......|..++|+|. ++|.|+-|+...||++.+
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~ 128 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLST 128 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccc
Confidence 4556666666678899999999999999999999975 456677778899999999995 999999999999999985
Q ss_pred C----cceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEee-CC
Q 001349 843 S----ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIP-QG 917 (1094)
Q Consensus 843 ~----~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fsp-dg 917 (1094)
. .....+.+.+|++.+.++.|-+| ..|+|+|.|.+..+||+++|+ .....+.|...|.++. ++| ++
T Consensus 129 ~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~-~~~~f~GH~gDV~sls-------l~p~~~ 199 (343)
T KOG0286|consen 129 RDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQ-QTQVFHGHTGDVMSLS-------LSPSDG 199 (343)
T ss_pred ccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccce-EEEEecCCcccEEEEe-------cCCCCC
Confidence 4 23456789999999999999874 578899999999999999986 4555567788888887 566 44
Q ss_pred CeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEE
Q 001349 918 AGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTA 997 (1094)
Q Consensus 918 ~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~la 997 (1094)
+ .+++|+-|++.++||++.+.+. +.|.+|...|+++.|+|++.-++
T Consensus 200 n----------------------------tFvSg~cD~~aklWD~R~~~c~------qtF~ghesDINsv~ffP~G~afa 245 (343)
T KOG0286|consen 200 N----------------------------TFVSGGCDKSAKLWDVRSGQCV------QTFEGHESDINSVRFFPSGDAFA 245 (343)
T ss_pred C----------------------------eEEecccccceeeeeccCccee------EeecccccccceEEEccCCCeee
Confidence 4 4889999999999999999988 78889999999999999999999
Q ss_pred EEECCCCEEEEEECCCCeEEEEecC---CCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEE
Q 001349 998 STSLDGAAVKMWSTSNYNMVGSLPT---LSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMAL 1072 (1094)
Q Consensus 998 s~s~Dg~~I~iwd~~~~~~~~~~~~---~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~ 1072 (1094)
+|+.|+ +.++||++..+.+..+.+ ..+|++++||-. ++++|..|.++.|||.-.++.+..+ .||.++|+++..
T Consensus 246 tGSDD~-tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L-~GHeNRvScl~~ 323 (343)
T KOG0286|consen 246 TGSDDA-TCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVL-AGHENRVSCLGV 323 (343)
T ss_pred ecCCCc-eeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEe-eccCCeeEEEEE
Confidence 999886 999999999998888885 467999999876 8999999999999999999999999 699999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEe
Q 001349 1073 DDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1073 Spdg~~L~sgs~DG~I~iWd 1092 (1094)
+|||..++||+.|.+++||.
T Consensus 324 s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 324 SPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CCCCcEEEecchhHheeecC
Confidence 99999999999999999994
No 6
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.5e-31 Score=265.28 Aligned_cols=266 Identities=20% Similarity=0.325 Sum_probs=224.6
Q ss_pred cCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeE
Q 001349 784 EMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVT 859 (1094)
Q Consensus 784 d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~ 859 (1094)
++-.|+++|+|.+||+|... .+..++....+.|..+...|+ .|++++ .-.||+||+.++...++.++.+|++.|+
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVT 87 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceE
Confidence 45689999999999999987 456677777899999999998 566555 4689999999988779999999999999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCce
Q 001349 860 GLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPK 939 (1094)
Q Consensus 860 sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~ 939 (1094)
++.|..||++++|||.||++||||++. +.+...+.+..+|+++. ..|+..
T Consensus 88 aVgF~~dgrWMyTgseDgt~kIWdlR~--~~~qR~~~~~spVn~vv-------lhpnQt--------------------- 137 (311)
T KOG0315|consen 88 AVGFQCDGRWMYTGSEDGTVKIWDLRS--LSCQRNYQHNSPVNTVV-------LHPNQT--------------------- 137 (311)
T ss_pred EEEEeecCeEEEecCCCceEEEEeccC--cccchhccCCCCcceEE-------ecCCcc---------------------
Confidence 999999999999999999999999998 35556666667777766 444433
Q ss_pred EEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCe----
Q 001349 940 CLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN---- 1015 (1094)
Q Consensus 940 ~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~---- 1015 (1094)
.|++|..+|.|++||+.+..+.... +.....+|.++...+++.+++.+...| ...+|++-+..
T Consensus 138 -------eLis~dqsg~irvWDl~~~~c~~~l-----iPe~~~~i~sl~v~~dgsml~a~nnkG-~cyvW~l~~~~~~s~ 204 (311)
T KOG0315|consen 138 -------ELISGDQSGNIRVWDLGENSCTHEL-----IPEDDTSIQSLTVMPDGSMLAAANNKG-NCYVWRLLNHQTASE 204 (311)
T ss_pred -------eEEeecCCCcEEEEEccCCcccccc-----CCCCCcceeeEEEcCCCcEEEEecCCc-cEEEEEccCCCcccc
Confidence 4899999999999999988665422 223346899999999999999998876 99999987643
Q ss_pred --EEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCC-cEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEE
Q 001349 1016 --MVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQ-IRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQ 1089 (1094)
Q Consensus 1016 --~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~-~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~ 1089 (1094)
++..++ |.+.+..+.+||| +++++|.|.+++||+.++. +.-..+ .+|...+++.+||.||.||+||+.|++++
T Consensus 205 l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l-~gh~rWvWdc~FS~dg~YlvTassd~~~r 283 (311)
T KOG0315|consen 205 LEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVL-TGHQRWVWDCAFSADGEYLVTASSDHTAR 283 (311)
T ss_pred ceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEe-ecCCceEEeeeeccCccEEEecCCCCcee
Confidence 445555 7888999999999 9999999999999999987 555556 58999999999999999999999999999
Q ss_pred EEeCC
Q 001349 1090 AWGLS 1094 (1094)
Q Consensus 1090 iWdls 1094 (1094)
+|+++
T Consensus 284 lW~~~ 288 (311)
T KOG0315|consen 284 LWDLS 288 (311)
T ss_pred ecccc
Confidence 99974
No 7
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.9e-32 Score=290.55 Aligned_cols=237 Identities=20% Similarity=0.320 Sum_probs=214.9
Q ss_pred cCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecC--CCEEEEEeCCCcEEEEECCC
Q 001349 811 SENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS--GEMLYSGSLDKTARVWSIGN 886 (1094)
Q Consensus 811 ~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspd--g~~LaSgs~DgtI~vWdi~~ 886 (1094)
+.+.+|..+.|+.| .|+|||.+|.++||+..+. ..+.++.+|+..|.++.|+|. +..++||+.||++++|++.+
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~--~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC--NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ 250 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCc--ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence 56789999999986 9999999999999999998 789999999999999999995 67999999999999999998
Q ss_pred CceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCc
Q 001349 887 EEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGT 966 (1094)
Q Consensus 887 ~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~ 966 (1094)
.. .......|...|..++ |.|+|++ |.++|.|.+=++||+.++.
T Consensus 251 e~-~l~~l~gH~~RVs~Va-------fHPsG~~----------------------------L~TasfD~tWRlWD~~tk~ 294 (459)
T KOG0272|consen 251 ET-PLQDLEGHLARVSRVA-------FHPSGKF----------------------------LGTASFDSTWRLWDLETKS 294 (459)
T ss_pred Cc-chhhhhcchhhheeee-------ecCCCce----------------------------eeecccccchhhcccccch
Confidence 53 2223334567787777 9999985 8889999999999999998
Q ss_pred eeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCC
Q 001349 967 FATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGG 1043 (1094)
Q Consensus 967 ~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg 1043 (1094)
.+ ....||...|.+++|++||.++++|+.|. .-+|||+++|.++..+. |...|.+++|+|+ .+++||.|+
T Consensus 295 El------L~QEGHs~~v~~iaf~~DGSL~~tGGlD~-~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dn 367 (459)
T KOG0272|consen 295 EL------LLQEGHSKGVFSIAFQPDGSLAATGGLDS-LGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDN 367 (459)
T ss_pred hh------HhhcccccccceeEecCCCceeeccCccc-hhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCC
Confidence 87 45679999999999999999999999996 99999999999999998 7899999999999 699999999
Q ss_pred eEEEEECCCCcEEEEecccCCcceEEEEEcC-CCCEEEEEeCCCcEEEEeC
Q 001349 1044 TVEIWDQKRQIRIETLQTGTSGKVQCMALDD-NEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1044 ~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Sp-dg~~L~sgs~DG~I~iWdl 1093 (1094)
+++|||++....+.++ .+|.+-|+.|.|+| .|.+|+|++.|++++||.-
T Consensus 368 t~kVWDLR~r~~ly~i-pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~ 417 (459)
T KOG0272|consen 368 TCKVWDLRMRSELYTI-PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWST 417 (459)
T ss_pred cEEEeeecccccceec-ccccchhhheEecccCCeEEEEcccCcceeeecC
Confidence 9999999999999999 59999999999998 7899999999999999963
No 8
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.98 E-value=8.7e-30 Score=278.73 Aligned_cols=323 Identities=19% Similarity=0.302 Sum_probs=252.0
Q ss_pred HHHHHHhhhccccccccccCcEEEEeeCCCCeEEEeCC--cceeecc---cCCCcEEEEEEeCC--EEEEEECCCeEEEE
Q 001349 766 KDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDS---SENGKVLSIACFRD--KIFSGHSDGTIKVW 838 (1094)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~---~h~~~V~~l~fspd--~LaSgs~Dg~I~vW 838 (1094)
+...+.|.++++..-+++||.++++.|.||+|.+||-+ +....+. +|.+.|.+++|+|| .++|++.|.+++||
T Consensus 183 k~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIW 262 (603)
T KOG0318|consen 183 KSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIW 262 (603)
T ss_pred eecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEE
Confidence 34556788899999999999999999999999999987 3444444 89999999999998 99999999999999
Q ss_pred ecCCCcc-----------------------------------------eeEEEecccCCCeEEEEEecCCCEEEEEeCCC
Q 001349 839 TGRGSIL-----------------------------------------HLIQQIREHTKAVTGLAILQSGEMLYSGSLDK 877 (1094)
Q Consensus 839 d~~t~~~-----------------------------------------~~~~~l~~H~~~V~sv~fspdg~~LaSgs~Dg 877 (1094)
|+.++.. ..++.+.||.+.|+++..+||+++|+||+.||
T Consensus 263 dVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG 342 (603)
T KOG0318|consen 263 DVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDG 342 (603)
T ss_pred EeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCc
Confidence 9987621 11233368999999999999999999999999
Q ss_pred cEEEEECCCCceEEEEecccCccceeeeecC-----------------------------------ceEEEeeCCCeEEE
Q 001349 878 TARVWSIGNEEIHCVQVHDIKDQIQNLAVSN-----------------------------------SILCFIPQGAGIKV 922 (1094)
Q Consensus 878 tI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~-----------------------------------~~~~fspdg~~l~~ 922 (1094)
.|.-|+..+|..-.+....|...|..++... ..++..++|...++
T Consensus 343 ~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv 422 (603)
T KOG0318|consen 343 HINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVV 422 (603)
T ss_pred eEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEE
Confidence 9999999887633333333344444433221 12333444444444
Q ss_pred EEeCCeEEEEcC--------CCCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCC
Q 001349 923 HLRNGKTKLLNS--------SKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG 992 (1094)
Q Consensus 923 ~~~~g~i~l~~~--------~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~ 992 (1094)
...++.+.+-+. .-...++++++ ..+++|+.||.|++|.+..+..... .....|..+|++++|+||
T Consensus 423 ~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee----~~~~~h~a~iT~vaySpd 498 (603)
T KOG0318|consen 423 ACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEE----AKLLEHRAAITDVAYSPD 498 (603)
T ss_pred EecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccce----eeeecccCCceEEEECCC
Confidence 333333322222 22456777776 4599999999999999987664322 356779999999999999
Q ss_pred ccEEEEEECCCCEEEEEECCCCeEEEEe-c-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceE
Q 001349 993 LVYTASTSLDGAAVKMWSTSNYNMVGSL-P-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQ 1068 (1094)
Q Consensus 993 ~~~las~s~Dg~~I~iwd~~~~~~~~~~-~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~ 1068 (1094)
+.|++++...+ .+.+||+.+.+..... . |...|.+++|+|+ ++++|+-|..|.||++........++..|...|+
T Consensus 499 ~~yla~~Da~r-kvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn 577 (603)
T KOG0318|consen 499 GAYLAAGDASR-KVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVN 577 (603)
T ss_pred CcEEEEeccCC-cEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCce
Confidence 99999998875 9999999987763322 2 8899999999999 8999999999999999987766777789999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1069 CMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1069 ~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
.+.|- |...+++.+.|..|++|+++
T Consensus 578 ~v~wl-de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 578 SVAWL-DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred eEEEe-cCceEEeccCcceeEEeccc
Confidence 99996 56789999999999999974
No 9
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=2.4e-30 Score=293.54 Aligned_cols=320 Identities=19% Similarity=0.245 Sum_probs=258.5
Q ss_pred hhhccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC----EEEEEECCCeEEEEecCCCcc
Q 001349 772 LRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD----KIFSGHSDGTIKVWTGRGSIL 845 (1094)
Q Consensus 772 ~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd----~LaSgs~Dg~I~vWd~~t~~~ 845 (1094)
|...+-...+.+.+..+++||.||.++|||+. .+.+.+.||.|.|.++.|+|+ .|++|..|++|++||+.+..
T Consensus 104 He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~- 182 (775)
T KOG0319|consen 104 HEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKR- 182 (775)
T ss_pred cCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCc-
Confidence 44444456677778899999999999999998 678899999999999999996 78999999999999999764
Q ss_pred eeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc-eE-----------------------EEEec------
Q 001349 846 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE-IH-----------------------CVQVH------ 895 (1094)
Q Consensus 846 ~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~-~~-----------------------~~~~~------ 895 (1094)
.++.++..|.+.|++++|++|+..++++|+|..+.|||+.+.+ .+ .+.+.
T Consensus 183 tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~ 262 (775)
T KOG0319|consen 183 TCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVV 262 (775)
T ss_pred hHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceE
Confidence 3788899999999999999999999999999999999983321 00 00000
Q ss_pred ----------------------------------------------------------ccCccceeeeecCc--------
Q 001349 896 ----------------------------------------------------------DIKDQIQNLAVSNS-------- 909 (1094)
Q Consensus 896 ----------------------------------------------------------~~~~~V~~v~~~~~-------- 909 (1094)
...+.|.++.+-++
T Consensus 263 ~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVA 342 (775)
T KOG0319|consen 263 QYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVA 342 (775)
T ss_pred EEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEE
Confidence 00011111111110
Q ss_pred ---------------------------eEEEeeCCCeEEEEEeCCeEEEEc----------------CCCCceEEEEeC-
Q 001349 910 ---------------------------ILCFIPQGAGIKVHLRNGKTKLLN----------------SSKYPKCLALVQ- 945 (1094)
Q Consensus 910 ---------------------------~~~fspdg~~l~~~~~~g~i~l~~----------------~~~~v~~l~~s~- 945 (1094)
.+....+|-.+++++.|.++.+|. |...|.+++++.
T Consensus 343 TNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~ 422 (775)
T KOG0319|consen 343 TNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKL 422 (775)
T ss_pred eCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeeccc
Confidence 011123456788888999999994 345688888864
Q ss_pred --CEEEEEEcCCeEEEEECCCCcee---EEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEe
Q 001349 946 --GKVYCGCQDGAIQEIDLATGTFA---TIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSL 1020 (1094)
Q Consensus 946 --~~l~sgs~Dg~I~iwDl~~~~~~---~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~ 1020 (1094)
..+++++.|+++++|++...+.. ..+........|...|++++++|+..+++++|.| ++.+||++.......++
T Consensus 423 ~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqD-ktaKiW~le~~~l~~vL 501 (775)
T KOG0319|consen 423 GASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQD-KTAKIWDLEQLRLLGVL 501 (775)
T ss_pred CccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccc-cceeeecccCceEEEEe
Confidence 45999999999999999863221 1222223456799999999999999999999999 59999999999999999
Q ss_pred c-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1021 P-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1021 ~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
. |...++++.|++. .++++|.|++|+||.+.++.++++| .||...|..+.|-.+|+.|++++.||-|++|++.
T Consensus 502 sGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~-eGH~~aVlra~F~~~~~qliS~~adGliKlWnik 577 (775)
T KOG0319|consen 502 SGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTF-EGHTSAVLRASFIRNGKQLISAGADGLIKLWNIK 577 (775)
T ss_pred eCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeee-cCccceeEeeeeeeCCcEEEeccCCCcEEEEecc
Confidence 9 7788999999998 8999999999999999999999999 6999999999999999999999999999999974
No 10
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=1.3e-30 Score=272.73 Aligned_cols=283 Identities=20% Similarity=0.312 Sum_probs=244.8
Q ss_pred HHHHHHHHhhhccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEe
Q 001349 764 HMKDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWT 839 (1094)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd 839 (1094)
.+..++.+|...++..++.+...+|++|+.|++|+|||+. ....++.||-..|..+++|+. ++++++.|+.|+.||
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD 221 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence 3456778899999999999999999999999999999998 566788899999999999985 999999999999999
Q ss_pred cCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCe
Q 001349 840 GRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAG 919 (1094)
Q Consensus 840 ~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~ 919 (1094)
+..+ +.++.+.||-..|.+++.+|.-+.|+||+.|.++||||+++.. .......|..+|.++. +.|.
T Consensus 222 Le~n--kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~-~V~~l~GH~~~V~~V~-------~~~~--- 288 (460)
T KOG0285|consen 222 LEYN--KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA-SVHVLSGHTNPVASVM-------CQPT--- 288 (460)
T ss_pred chhh--hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc-eEEEecCCCCcceeEE-------eecC---
Confidence 9999 7899999999999999999999999999999999999999953 2333334555665554 2221
Q ss_pred EEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEE
Q 001349 920 IKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTAST 999 (1094)
Q Consensus 920 l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~ 999 (1094)
+.++++|+.|++|++||++.|+.. ..+..|...|.+++.+|....++++
T Consensus 289 -------------------------dpqvit~S~D~tvrlWDl~agkt~------~tlt~hkksvral~lhP~e~~fASa 337 (460)
T KOG0285|consen 289 -------------------------DPQVITGSHDSTVRLWDLRAGKTM------ITLTHHKKSVRALCLHPKENLFASA 337 (460)
T ss_pred -------------------------CCceEEecCCceEEEeeeccCcee------EeeecccceeeEEecCCchhhhhcc
Confidence 346999999999999999999987 5667788999999999999999999
Q ss_pred ECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC-EEEEEEcCCeEEEEECCCCcEEEEec----cc---CCcceEEE
Q 001349 1000 SLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQ----TG---TSGKVQCM 1070 (1094)
Q Consensus 1000 s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~~~~~l~----~~---h~~~I~~l 1070 (1094)
+.| .|+-|++..|..+..+. |...+++++...| ++++|+++|.+.+||.++|...+.++ .| ....|.+.
T Consensus 338 s~d--nik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as 415 (460)
T KOG0285|consen 338 SPD--NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFAS 415 (460)
T ss_pred CCc--cceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEE
Confidence 988 49999999999998887 6788999999888 89999999999999999987655542 11 23468999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEe
Q 001349 1071 ALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1071 ~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
+|...|..|+||..|.+|++|.
T Consensus 416 ~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 416 CFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred eecccCceEEeccCCcceEEEe
Confidence 9999999999999999999995
No 11
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=6.3e-32 Score=280.88 Aligned_cols=266 Identities=21% Similarity=0.354 Sum_probs=228.4
Q ss_pred ccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEeccc
Q 001349 777 KYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREH 854 (1094)
Q Consensus 777 ~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H 854 (1094)
..-.++.|..++++|..|++|+|||.. .+...+.||+|.|.|+.|....+++|+.|.+|+|||++++ .++.++-+|
T Consensus 199 gVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tg--e~l~tlihH 276 (499)
T KOG0281|consen 199 GVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTG--EPLNTLIHH 276 (499)
T ss_pred ceEEEEecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCC--chhhHHhhh
Confidence 355678899999999999999999998 6788999999999999999999999999999999999999 899999999
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC
Q 001349 855 TKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS 934 (1094)
Q Consensus 855 ~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~ 934 (1094)
...|..+.|+ ..+++|+|.|.+|.|||+.... .+.... .+..|
T Consensus 277 ceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps-----------~it~rr------------------------VLvGH 319 (499)
T KOG0281|consen 277 CEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPT-----------DITLRR------------------------VLVGH 319 (499)
T ss_pred cceeEEEEEe--CCEEEEecCCceeEEEeccCch-----------HHHHHH------------------------HHhhh
Confidence 9999999997 4699999999999999998742 111110 01123
Q ss_pred CCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCC
Q 001349 935 SKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNY 1014 (1094)
Q Consensus 935 ~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~ 1014 (1094)
...|+.+.|++..+++++.|.+|++|++.+++.+ +++.+|...|-|+.+ .+.++++|+.|. +|++||+..|
T Consensus 320 rAaVNvVdfd~kyIVsASgDRTikvW~~st~efv------Rtl~gHkRGIAClQY--r~rlvVSGSSDn-tIRlwdi~~G 390 (499)
T KOG0281|consen 320 RAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFV------RTLNGHKRGIACLQY--RDRLVVSGSSDN-TIRLWDIECG 390 (499)
T ss_pred hhheeeeccccceEEEecCCceEEEEeccceeee------hhhhcccccceehhc--cCeEEEecCCCc-eEEEEecccc
Confidence 4456667777778999999999999999999998 778889888888876 467899999996 9999999999
Q ss_pred eEEEEec-CCCCEEEEEEeCCEEEEEEcCCeEEEEECCCCc---------EEEEecccCCcceEEEEEcCCCCEEEEEeC
Q 001349 1015 NMVGSLP-TLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQI---------RIETLQTGTSGKVQCMALDDNEEFLVIGTS 1084 (1094)
Q Consensus 1015 ~~~~~~~-~~~~v~~l~~spd~l~sgs~dg~I~vwd~~t~~---------~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~ 1084 (1094)
.+++.+. |..-|.++.|+...+++|..||+|+|||+.++. ++.++ ..|.+.|..+.|. ...+++++.
T Consensus 391 ~cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~l-v~hsgRVFrLQFD--~fqIvsssH 467 (499)
T KOG0281|consen 391 ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTL-VEHSGRVFRLQFD--EFQIISSSH 467 (499)
T ss_pred HHHHHHhchHHhhhheeecCceeeeccccceEEEEecccccCCcccccchHHHhh-hhccceeEEEeec--ceEEEeccC
Confidence 9999998 667799999999999999999999999988754 23344 4689999999994 677999999
Q ss_pred CCcEEEEeC
Q 001349 1085 DGRIQAWGL 1093 (1094)
Q Consensus 1085 DG~I~iWdl 1093 (1094)
|.+|.|||+
T Consensus 468 ddtILiWdF 476 (499)
T KOG0281|consen 468 DDTILIWDF 476 (499)
T ss_pred CCeEEEEEc
Confidence 999999997
No 12
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=4.2e-31 Score=281.27 Aligned_cols=270 Identities=17% Similarity=0.263 Sum_probs=234.2
Q ss_pred ccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEE
Q 001349 775 LRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQ 850 (1094)
Q Consensus 775 ~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~ 850 (1094)
-+...-+.++|++|++|+..|.+.+|+-. ....+++.|..+|+++.|+++ +++||+.+|.|++|+..-. .++.
T Consensus 98 ~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn---nVk~ 174 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN---NVKI 174 (464)
T ss_pred ceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh---hhHH
Confidence 34456688899999999999999999987 345677899999999999986 9999999999999998765 4555
Q ss_pred ecccC-CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeE
Q 001349 851 IREHT-KAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKT 929 (1094)
Q Consensus 851 l~~H~-~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i 929 (1094)
+++|. ..|.+++|+|+...++|+|+||+|+|||....+...+. ..|.-.
T Consensus 175 ~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL-~GHgwd----------------------------- 224 (464)
T KOG0284|consen 175 IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL-RGHGWD----------------------------- 224 (464)
T ss_pred hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhee-ccCCCC-----------------------------
Confidence 66665 89999999999999999999999999999875421111 222333
Q ss_pred EEEcCCCCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEE
Q 001349 930 KLLNSSKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVK 1007 (1094)
Q Consensus 930 ~l~~~~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~ 1007 (1094)
|+|+.|++ +.|++|+.|..|++||.++|.++ .++.+|...|..+.|++++.+++++|.|. .++
T Consensus 225 --------VksvdWHP~kgLiasgskDnlVKlWDprSg~cl------~tlh~HKntVl~~~f~~n~N~Llt~skD~-~~k 289 (464)
T KOG0284|consen 225 --------VKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCL------ATLHGHKNTVLAVKFNPNGNWLLTGSKDQ-SCK 289 (464)
T ss_pred --------cceeccCCccceeEEccCCceeEeecCCCcchh------hhhhhccceEEEEEEcCCCCeeEEccCCc-eEE
Confidence 44445544 45999999999999999999998 67788999999999999999999999995 999
Q ss_pred EEECCCCeEEEEec-CCCCEEEEEEeCC---EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEe
Q 001349 1008 MWSTSNYNMVGSLP-TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGT 1083 (1094)
Q Consensus 1008 iwd~~~~~~~~~~~-~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs 1083 (1094)
++|+++.+.++++. |...++++.|+|- ++.+|+.||.|..|.+...+++..+..+|.+.|++++|+|-|.+|++|+
T Consensus 290 v~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgs 369 (464)
T KOG0284|consen 290 VFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGS 369 (464)
T ss_pred EEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecC
Confidence 99999888888888 8899999999985 8999999999999999988888889889999999999999999999999
Q ss_pred CCCcEEEEe
Q 001349 1084 SDGRIQAWG 1092 (1094)
Q Consensus 1084 ~DG~I~iWd 1092 (1094)
.|.++++|.
T Consensus 370 nd~t~rfw~ 378 (464)
T KOG0284|consen 370 NDRTVRFWT 378 (464)
T ss_pred CCcceeeec
Confidence 999999995
No 13
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=3e-29 Score=258.23 Aligned_cols=277 Identities=22% Similarity=0.316 Sum_probs=233.0
Q ss_pred HHhhhccccccccccCcEEEEeeCCCCeEEEeCC---cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCc
Q 001349 770 KGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI 844 (1094)
Q Consensus 770 ~~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~---~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~ 844 (1094)
.+|...+....|.|+|..+++||.|..|.+|+.. +-..++.+|.+.|..+.|.+| .+++++.|.+|+.||+.+|
T Consensus 44 ~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG- 122 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETG- 122 (338)
T ss_pred CCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccc-
Confidence 5566677778888999999999999999999965 345667899999999999987 9999999999999999999
Q ss_pred ceeEEEecccCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEE
Q 001349 845 LHLIQQIREHTKAVTGLAILQS-GEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVH 923 (1094)
Q Consensus 845 ~~~~~~l~~H~~~V~sv~fspd-g~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~ 923 (1094)
++++.+++|.+.|+++.-+.- ..++.||+.||++++||+++. ..++....+-+++++. |..++
T Consensus 123 -~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k--~~~~t~~~kyqltAv~-------f~d~s------ 186 (338)
T KOG0265|consen 123 -KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK--EAIKTFENKYQLTAVG-------FKDTS------ 186 (338)
T ss_pred -eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeeccc--chhhccccceeEEEEE-------ecccc------
Confidence 899999999999999985443 457788999999999999975 3344443344445544 43333
Q ss_pred EeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCC
Q 001349 924 LRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG 1003 (1094)
Q Consensus 924 ~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg 1003 (1094)
+.+++|+-|+.|++||++.+... ..+.||.++|+.+..++++.++.+-+.|.
T Consensus 187 ----------------------~qv~sggIdn~ikvWd~r~~d~~------~~lsGh~DtIt~lsls~~gs~llsnsMd~ 238 (338)
T KOG0265|consen 187 ----------------------DQVISGGIDNDIKVWDLRKNDGL------YTLSGHADTITGLSLSRYGSFLLSNSMDN 238 (338)
T ss_pred ----------------------cceeeccccCceeeeccccCcce------EEeecccCceeeEEeccCCCccccccccc
Confidence 35889999999999999998887 56788999999999999999999999996
Q ss_pred CEEEEEECCCC----eEEEEec---C--CCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEE
Q 001349 1004 AAVKMWSTSNY----NMVGSLP---T--LSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMAL 1072 (1094)
Q Consensus 1004 ~~I~iwd~~~~----~~~~~~~---~--~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~ 1072 (1094)
++++||++.. .++..+. | .......+|+|+ ++-+|+.|..+++||..+...+..+ .||.+.|.+++|
T Consensus 239 -tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lykl-pGh~gsvn~~~F 316 (338)
T KOG0265|consen 239 -TVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKL-PGHYGSVNEVDF 316 (338)
T ss_pred -eEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEc-CCcceeEEEeee
Confidence 9999999853 4466665 2 244567889998 7889999999999999998899999 699999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeC
Q 001349 1073 DDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1073 Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
+|...+|.+++.|.+|++=.+
T Consensus 317 hp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 317 HPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred cCCCcEEEEeccCceeEeecc
Confidence 999999999999999987443
No 14
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=3.7e-29 Score=270.79 Aligned_cols=271 Identities=23% Similarity=0.338 Sum_probs=226.6
Q ss_pred ccccccccccCc-EEEEeeCCCCeEEEeCCc------ceeecc------c----CCCcEEEEEEeCC--EEEEEECCCeE
Q 001349 775 LRKYSPLAFEMV-KVLSNGHDSSADFWNHRE------LVHVDS------S----ENGKVLSIACFRD--KIFSGHSDGTI 835 (1094)
Q Consensus 775 ~~~~~~~~~d~~-~l~s~s~dg~I~vWd~~~------~~~~~~------~----h~~~V~~l~fspd--~LaSgs~Dg~I 835 (1094)
-+-.+.+.|-.. .+++|+.|.+.++|++.. ....++ + .+..|++++|+.+ .||+|+.||.+
T Consensus 180 ~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~ 259 (524)
T KOG0273|consen 180 EVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEA 259 (524)
T ss_pred ceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEE
Confidence 334566666444 889999999999999863 111111 1 2468999999965 99999999999
Q ss_pred EEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEee
Q 001349 836 KVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIP 915 (1094)
Q Consensus 836 ~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fsp 915 (1094)
++|+..++ .+.++..|.++|.++.|+.+|++|++++.||++.+||..+|+......+ +..+-..+. |-
T Consensus 260 riw~~~G~---l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~-~s~~~lDVd-------W~- 327 (524)
T KOG0273|consen 260 RIWNKDGN---LISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEF-HSAPALDVD-------WQ- 327 (524)
T ss_pred EEEecCch---hhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeee-ccCCccceE-------Ee-
Confidence 99999876 7888999999999999999999999999999999999999864332222 122212222 11
Q ss_pred CCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccE
Q 001349 916 QGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVY 995 (1094)
Q Consensus 916 dg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~ 995 (1094)
+++.+++.+.||.|+++.+....+. .++.+|.++|.++.|+|.+.+
T Consensus 328 ----------------------------~~~~F~ts~td~~i~V~kv~~~~P~------~t~~GH~g~V~alk~n~tg~L 373 (524)
T KOG0273|consen 328 ----------------------------SNDEFATSSTDGCIHVCKVGEDRPV------KTFIGHHGEVNALKWNPTGSL 373 (524)
T ss_pred ----------------------------cCceEeecCCCceEEEEEecCCCcc------eeeecccCceEEEEECCCCce
Confidence 1245899999999999999888877 678899999999999999999
Q ss_pred EEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC-----------EEEEEEcCCeEEEEECCCCcEEEEecccC
Q 001349 996 TASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE-----------LVYLGCKGGTVEIWDQKRQIRIETLQTGT 1063 (1094)
Q Consensus 996 las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd-----------~l~sgs~dg~I~vwd~~t~~~~~~l~~~h 1063 (1094)
+++++.|+ +++||+.....+...+. |...|..+.|+|+ .+++++.|++|++||+..+.++.+| ..|
T Consensus 374 LaS~SdD~-TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f-~kH 451 (524)
T KOG0273|consen 374 LASCSDDG-TLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTL-MKH 451 (524)
T ss_pred EEEecCCC-eeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEee-ccC
Confidence 99999987 99999998888888887 7889999999985 5999999999999999999999999 589
Q ss_pred CcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1064 SGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1064 ~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
..+|.+++|||+|+++++|+.||.|.+|++
T Consensus 452 ~~pVysvafS~~g~ylAsGs~dg~V~iws~ 481 (524)
T KOG0273|consen 452 QEPVYSVAFSPNGRYLASGSLDGCVHIWST 481 (524)
T ss_pred CCceEEEEecCCCcEEEecCCCCeeEeccc
Confidence 999999999999999999999999999986
No 15
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.97 E-value=1.3e-28 Score=251.17 Aligned_cols=244 Identities=21% Similarity=0.297 Sum_probs=207.5
Q ss_pred eeecccCCCcEEEEEEeC---CEEEEEECCCeEEEEecCCCcc---eeEEEecccCCCeEEEEEecCCCEEEEEeCCCcE
Q 001349 806 VHVDSSENGKVLSIACFR---DKIFSGHSDGTIKVWTGRGSIL---HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTA 879 (1094)
Q Consensus 806 ~~~~~~h~~~V~~l~fsp---d~LaSgs~Dg~I~vWd~~t~~~---~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI 879 (1094)
..++.+|++.|+.++..+ +.+++++.|.++.+|++..... ..++.+.||...|..+..++||++.+++|.|+++
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~l 87 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTL 87 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceE
Confidence 457889999999999876 4999999999999998764322 5688999999999999999999999999999999
Q ss_pred EEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEE
Q 001349 880 RVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQE 959 (1094)
Q Consensus 880 ~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~i 959 (1094)
++||+.+|+ .......|...|.+++ |++|.+ ++++|+.|.+|.+
T Consensus 88 rlWDl~~g~-~t~~f~GH~~dVlsva-------~s~dn~----------------------------qivSGSrDkTikl 131 (315)
T KOG0279|consen 88 RLWDLATGE-STRRFVGHTKDVLSVA-------FSTDNR----------------------------QIVSGSRDKTIKL 131 (315)
T ss_pred EEEEecCCc-EEEEEEecCCceEEEE-------ecCCCc----------------------------eeecCCCcceeee
Confidence 999999985 4444556677788877 777776 4899999999999
Q ss_pred EECCCCceeEEeccceeecCCCCCeEEEEEeCC--ccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--
Q 001349 960 IDLATGTFATIQTGHRKLLGKANPVHALQVHNG--LVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE-- 1034 (1094)
Q Consensus 960 wDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~--~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd-- 1034 (1094)
||+..+..... .-.++.+.|+++.|+|+ ..++++++.|+ +|++||+++.+....+. |.+.++.+++|||
T Consensus 132 wnt~g~ck~t~-----~~~~~~~WVscvrfsP~~~~p~Ivs~s~Dk-tvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGs 205 (315)
T KOG0279|consen 132 WNTLGVCKYTI-----HEDSHREWVSCVRFSPNESNPIIVSASWDK-TVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGS 205 (315)
T ss_pred eeecccEEEEE-----ecCCCcCcEEEEEEcCCCCCcEEEEccCCc-eEEEEccCCcchhhccccccccEEEEEECCCCC
Confidence 99876544321 11223789999999998 78999999995 99999999998888887 7889999999999
Q ss_pred EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1035 LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1035 ~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
..++|+.||.+.+||++.++.+..+ +|...|.+++|+|+.-+|+.+... .|+|||+.
T Consensus 206 lcasGgkdg~~~LwdL~~~k~lysl--~a~~~v~sl~fspnrywL~~at~~-sIkIwdl~ 262 (315)
T KOG0279|consen 206 LCASGGKDGEAMLWDLNEGKNLYSL--EAFDIVNSLCFSPNRYWLCAATAT-SIKIWDLE 262 (315)
T ss_pred EEecCCCCceEEEEEccCCceeEec--cCCCeEeeEEecCCceeEeeccCC-ceEEEecc
Confidence 7889999999999999999999988 488899999999988777766544 59999973
No 16
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3e-29 Score=266.87 Aligned_cols=290 Identities=17% Similarity=0.244 Sum_probs=235.3
Q ss_pred chhhhHHHHHHHHHHhhhccccccccccCcEEEEeeCCCCeEEEeCC-----cceeecccCCCcEEEEEEeCC--EEEEE
Q 001349 757 GLRDINIHMKDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR-----ELVHVDSSENGKVLSIACFRD--KIFSG 829 (1094)
Q Consensus 757 ~~~~l~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~-----~~~~~~~~h~~~V~~l~fspd--~LaSg 829 (1094)
+...+....+.++..|..-+.+..|+.+|+|+|+++.|.+..+|++. ....++.+|..+|..+.|||| +++++
T Consensus 208 ~~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaC 287 (519)
T KOG0293|consen 208 GRLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLAC 287 (519)
T ss_pred CcccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEec
Confidence 33455677788888888888899999999999999999999999875 456788999999999999997 99999
Q ss_pred ECCCeEEEEecCCCcceeEEEec-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecC
Q 001349 830 HSDGTIKVWTGRGSILHLIQQIR-EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSN 908 (1094)
Q Consensus 830 s~Dg~I~vWd~~t~~~~~~~~l~-~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~ 908 (1094)
+.|..+++||+.+| .+...+. +|...+.+++|.|||..+++|+.|++|..||++......-.... ...|.+++
T Consensus 288 g~~e~~~lwDv~tg--d~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr-~~~v~dla--- 361 (519)
T KOG0293|consen 288 GFDEVLSLWDVDTG--DLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVR-DPKVHDLA--- 361 (519)
T ss_pred CchHheeeccCCcc--hhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccc-cceeEEEE---
Confidence 99999999999999 4554443 35688999999999999999999999999999986422222111 13355555
Q ss_pred ceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEE
Q 001349 909 SILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQ 988 (1094)
Q Consensus 909 ~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~ 988 (1094)
+++||++ +++.+.|..|++|+..+..... +.....+|+++.
T Consensus 362 ----it~Dgk~----------------------------vl~v~~d~~i~l~~~e~~~dr~-------lise~~~its~~ 402 (519)
T KOG0293|consen 362 ----ITYDGKY----------------------------VLLVTVDKKIRLYNREARVDRG-------LISEEQPITSFS 402 (519)
T ss_pred ----EcCCCcE----------------------------EEEEecccceeeechhhhhhhc-------cccccCceeEEE
Confidence 7777775 5666789999999987765531 223346899999
Q ss_pred EeCCccEEEEEECCCCEEEEEECCCCeEEEEecCC---CCEEEEEEeC---CEEEEEEcCCeEEEEECCCCcEEEEeccc
Q 001349 989 VHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTL---SEVRAMVVSS---ELVYLGCKGGTVEIWDQKRQIRIETLQTG 1062 (1094)
Q Consensus 989 fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~---~~v~~l~~sp---d~l~sgs~dg~I~vwd~~t~~~~~~l~~~ 1062 (1094)
.+.++.++...-.+. .+++||+.....++.+.++ ..+-.-+|-. +++++||+|+.|+||+..+|+++..+ .|
T Consensus 403 iS~d~k~~LvnL~~q-ei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~L-sG 480 (519)
T KOG0293|consen 403 ISKDGKLALVNLQDQ-EIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVL-SG 480 (519)
T ss_pred EcCCCcEEEEEcccC-eeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEee-cC
Confidence 999999988876664 9999999988888777632 2233334433 29999999999999999999999999 69
Q ss_pred CCcceEEEEEcCCC-CEEEEEeCCCcEEEEeC
Q 001349 1063 TSGKVQCMALDDNE-EFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1063 h~~~I~~l~~Spdg-~~L~sgs~DG~I~iWdl 1093 (1094)
|...|++++|+|.. .++|+||+||+|+||..
T Consensus 481 Hs~~vNcVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 481 HSKTVNCVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred CcceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence 99999999999966 57899999999999975
No 17
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1e-27 Score=271.79 Aligned_cols=309 Identities=18% Similarity=0.255 Sum_probs=248.3
Q ss_pred cccccccccCcEEEEeeCCCCeEEEeCCc----------ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCC
Q 001349 776 RKYSPLAFEMVKVLSNGHDSSADFWNHRE----------LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGS 843 (1094)
Q Consensus 776 ~~~~~~~~d~~~l~s~s~dg~I~vWd~~~----------~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~ 843 (1094)
.....++|+|..++.+. .+.+.||.... ...+..+|...|+++.|+.| +|++|+.|-++++|+++..
T Consensus 99 v~~i~fSPng~~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~ 177 (893)
T KOG0291|consen 99 VGAIKFSPNGKFFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGN 177 (893)
T ss_pred cceEEECCCCcEEEEEe-cceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccc
Confidence 34566778888877654 56889998762 23567789999999999987 9999999999999999876
Q ss_pred cceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECC------------------------CCc------eEEEE
Q 001349 844 ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIG------------------------NEE------IHCVQ 893 (1094)
Q Consensus 844 ~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~------------------------~~~------~~~~~ 893 (1094)
+.-....+.+|.+.|.+.-|..+...++|.+.||.+.+|... ..+ .....
T Consensus 178 k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~ 257 (893)
T KOG0291|consen 178 KNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTK 257 (893)
T ss_pred cccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEE
Confidence 434467789999999999999999999999999999999876 111 00000
Q ss_pred ec---ccCccceeeeecCc-----------------------------------eEEEeeCCCeEEEEEeC-CeEEEEc-
Q 001349 894 VH---DIKDQIQNLAVSNS-----------------------------------ILCFIPQGAGIKVHLRN-GKTKLLN- 933 (1094)
Q Consensus 894 ~~---~~~~~V~~v~~~~~-----------------------------------~~~fspdg~~l~~~~~~-g~i~l~~- 933 (1094)
.+ .....|.+..+.+. .+.|+..|.++++++.. |.+-+|+
T Consensus 258 k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweW 337 (893)
T KOG0291|consen 258 KHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEW 337 (893)
T ss_pred eeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEe
Confidence 00 11122332222111 34456667888777766 6676765
Q ss_pred -----------CCCCceEEEEeCC--EEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEE
Q 001349 934 -----------SSKYPKCLALVQG--KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTS 1000 (1094)
Q Consensus 934 -----------~~~~v~~l~~s~~--~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s 1000 (1094)
|...+.+++++++ .+++|+.||.|++||..+|-+. .++..|+..|+.+.|+..+..+++.+
T Consensus 338 qsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~------vTFteHts~Vt~v~f~~~g~~llssS 411 (893)
T KOG0291|consen 338 QSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCF------VTFTEHTSGVTAVQFTARGNVLLSSS 411 (893)
T ss_pred eccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEE------EEeccCCCceEEEEEEecCCEEEEee
Confidence 3457899999975 6999999999999999999998 67778999999999999999999999
Q ss_pred CCCCEEEEEECCCCeEEEEecCCCC--EEEEEEeCC--EEEEEEcCC-eEEEEECCCCcEEEEecccCCcceEEEEEcCC
Q 001349 1001 LDGAAVKMWSTSNYNMVGSLPTLSE--VRAMVVSSE--LVYLGCKGG-TVEIWDQKRQIRIETLQTGTSGKVQCMALDDN 1075 (1094)
Q Consensus 1001 ~Dg~~I~iwd~~~~~~~~~~~~~~~--v~~l~~spd--~l~sgs~dg-~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spd 1075 (1094)
.|| +|+.||+..+...++|..+.+ ..+++.+|. .+.+|+.|. .|+||++.+|+.+..+ .||.++|.+++|+|+
T Consensus 412 LDG-tVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiL-sGHEgPVs~l~f~~~ 489 (893)
T KOG0291|consen 412 LDG-TVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDIL-SGHEGPVSGLSFSPD 489 (893)
T ss_pred cCC-eEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehh-cCCCCcceeeEEccc
Confidence 998 999999999999999986544 567777765 677777664 6999999999999999 699999999999999
Q ss_pred CCEEEEEeCCCcEEEEeC
Q 001349 1076 EEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1076 g~~L~sgs~DG~I~iWdl 1093 (1094)
|..|++||.|.+|++||+
T Consensus 490 ~~~LaS~SWDkTVRiW~i 507 (893)
T KOG0291|consen 490 GSLLASGSWDKTVRIWDI 507 (893)
T ss_pred cCeEEeccccceEEEEEe
Confidence 999999999999999996
No 18
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=2.9e-29 Score=288.32 Aligned_cols=236 Identities=22% Similarity=0.351 Sum_probs=203.9
Q ss_pred CCcEEEEEEeCC--EEEEEECCCeEEEEecC-------------------------------CCcceeEEEecccCCCeE
Q 001349 813 NGKVLSIACFRD--KIFSGHSDGTIKVWTGR-------------------------------GSILHLIQQIREHTKAVT 859 (1094)
Q Consensus 813 ~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~-------------------------------t~~~~~~~~l~~H~~~V~ 859 (1094)
...++|..|++| +||.|..|..|++|.+. .+ ....++.||+++|.
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~--~~~~~L~GH~GPVy 455 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSS--GTSRTLYGHSGPVY 455 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCC--ceeEEeecCCCcee
Confidence 345566666665 66666666666666554 22 34456789999999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCce
Q 001349 860 GLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPK 939 (1094)
Q Consensus 860 sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~ 939 (1094)
.+.|+|+.++|+++|.|++||+|.+.+.. ..+....|..||+.+. |+|-|.+
T Consensus 456 g~sFsPd~rfLlScSED~svRLWsl~t~s-~~V~y~GH~~PVwdV~-------F~P~GyY-------------------- 507 (707)
T KOG0263|consen 456 GCSFSPDRRFLLSCSEDSSVRLWSLDTWS-CLVIYKGHLAPVWDVQ-------FAPRGYY-------------------- 507 (707)
T ss_pred eeeecccccceeeccCCcceeeeecccce-eEEEecCCCcceeeEE-------ecCCceE--------------------
Confidence 99999999999999999999999999965 2333347788899888 8887764
Q ss_pred EEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEE
Q 001349 940 CLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGS 1019 (1094)
Q Consensus 940 ~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~ 1019 (1094)
+++++.|++-++|......+. +.+.+|-+.|.|+.|||+..|+++||.| ++|++||+.+|..++.
T Consensus 508 --------Fatas~D~tArLWs~d~~~Pl------RifaghlsDV~cv~FHPNs~Y~aTGSsD-~tVRlWDv~~G~~VRi 572 (707)
T KOG0263|consen 508 --------FATASHDQTARLWSTDHNKPL------RIFAGHLSDVDCVSFHPNSNYVATGSSD-RTVRLWDVSTGNSVRI 572 (707)
T ss_pred --------EEecCCCceeeeeecccCCch------hhhcccccccceEEECCcccccccCCCC-ceEEEEEcCCCcEEEE
Confidence 889999999999999887776 6788999999999999999999999888 5999999999999999
Q ss_pred ec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1020 LP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1020 ~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
|. |.++|.+++|||+ ++++|+.||.|.+||+.++.++..+ .+|.+.|.++.||.||..||+||.|++|++||+.
T Consensus 573 F~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l-~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 573 FTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQL-KGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred ecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhh-hcccCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence 99 7899999999999 8999999999999999999999999 5899999999999999999999999999999973
No 19
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=5.1e-28 Score=254.99 Aligned_cols=305 Identities=17% Similarity=0.253 Sum_probs=256.4
Q ss_pred cccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecc
Q 001349 778 YSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIRE 853 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~ 853 (1094)
...+.|+.+.++|||.|..-.+|+.. .....+.+|...|+++.|+.+ +||||+.+|.|+||+..++ .....+..
T Consensus 69 avsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg--~~~~~~~~ 146 (399)
T KOG0296|consen 69 AVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTG--GEQWKLDQ 146 (399)
T ss_pred EEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccC--ceEEEeec
Confidence 45666778899999999999999997 566778899999999999997 9999999999999999999 56666655
Q ss_pred cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEc
Q 001349 854 HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN 933 (1094)
Q Consensus 854 H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~ 933 (1094)
--+.+.-+.|+|.+..|+.|+.||.+-+|.+..+. .+.....+..++.+-. |.|+|+.++++..+|++++|+
T Consensus 147 e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~-~~kv~~Gh~~~ct~G~-------f~pdGKr~~tgy~dgti~~Wn 218 (399)
T KOG0296|consen 147 EVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA-LCKVMSGHNSPCTCGE-------FIPDGKRILTGYDDGTIIVWN 218 (399)
T ss_pred ccCceEEEEecccccEEEeecCCCcEEEEECCCcc-eeeEecCCCCCccccc-------ccCCCceEEEEecCceEEEEe
Confidence 56677789999999999999999999999999853 3333344677777766 999999999999999999999
Q ss_pred CCC-------------CceEEEEe--CCEEEEEEcCCeEEEEECCCCceeEEeccc--eeecCCCCC---eEEEEEeCCc
Q 001349 934 SSK-------------YPKCLALV--QGKVYCGCQDGAIQEIDLATGTFATIQTGH--RKLLGKANP---VHALQVHNGL 993 (1094)
Q Consensus 934 ~~~-------------~v~~l~~s--~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~--~~~~~h~~~---V~sl~fs~~~ 993 (1094)
... ...++.++ +..++.|+.++.+++-+..+|+.+....+. .....+... |-++.++..-
T Consensus 219 ~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~l 298 (399)
T KOG0296|consen 219 PKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKL 298 (399)
T ss_pred cCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccccccc
Confidence 743 23344443 234888999999999999999988655431 112233334 4445556677
Q ss_pred cEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC-EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEE
Q 001349 994 VYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMAL 1072 (1094)
Q Consensus 994 ~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~ 1072 (1094)
.+.|+++.|| +|.|||+...++...+.|...|..+.|-++ ++++++.+|.|+.||.++|+++.++ .||...|.++++
T Consensus 299 pL~A~G~vdG-~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y-~GH~~~Il~f~l 376 (399)
T KOG0296|consen 299 PLAACGSVDG-TIAIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTY-TGHQMGILDFAL 376 (399)
T ss_pred chhhcccccc-eEEEEecccchhheeccCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEE-ecCchheeEEEE
Confidence 8899999997 999999999999889999999999999994 9999999999999999999999999 699999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCC
Q 001349 1073 DDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1073 Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
+|++++++|+|.|++.+||++.
T Consensus 377 s~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 377 SPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred cCCCcEEEEecCCCeEEEEecC
Confidence 9999999999999999999863
No 20
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=1.5e-27 Score=261.24 Aligned_cols=322 Identities=16% Similarity=0.240 Sum_probs=243.4
Q ss_pred HHhhhccccccccc-cCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCc
Q 001349 770 KGLRELRKYSPLAF-EMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI 844 (1094)
Q Consensus 770 ~~~~~~~~~~~~~~-d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~ 844 (1094)
.+|.+.++.+.+.+ .+-+++||+.|++|-+|+-. ........|..-|.|+.|+|| +++|.+.||+|.+||-.++
T Consensus 144 ~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktg- 222 (603)
T KOG0318|consen 144 TGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTG- 222 (603)
T ss_pred eccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCc-
Confidence 44555666666665 46699999999999999876 456677889999999999998 9999999999999999999
Q ss_pred ceeEEEec---ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEeccc------------CccceeeeecC-
Q 001349 845 LHLIQQIR---EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDI------------KDQIQNLAVSN- 908 (1094)
Q Consensus 845 ~~~~~~l~---~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~------------~~~V~~v~~~~- 908 (1094)
..+..+. +|.+.|.+++|+||+..++|+|.|.+++|||+.++++........ ++.+..+...+
T Consensus 223 -e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~ 301 (603)
T KOG0318|consen 223 -EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGT 301 (603)
T ss_pred -cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcE
Confidence 7788887 899999999999999999999999999999998875222111110 01111111000
Q ss_pred ----------------------ceEEEeeCCCeEEEEEeCCeEEEEcC-------------CCCceEEEEeC-CEEEEEE
Q 001349 909 ----------------------SILCFIPQGAGIKVHLRNGKTKLLNS-------------SKYPKCLALVQ-GKVYCGC 952 (1094)
Q Consensus 909 ----------------------~~~~fspdg~~l~~~~~~g~i~l~~~-------------~~~v~~l~~s~-~~l~sgs 952 (1094)
..+..+|+++++..++.||.+.-|+. ...|.+++... +.+++.+
T Consensus 302 in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g 381 (603)
T KOG0318|consen 302 INYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIG 381 (603)
T ss_pred EEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEe
Confidence 02336777777788888888877763 34566777666 6777888
Q ss_pred cCCeEEEEECCCCceeE--------------Eecc-----------ceeecC--------CCCCeEEEEEeCCccEEEEE
Q 001349 953 QDGAIQEIDLATGTFAT--------------IQTG-----------HRKLLG--------KANPVHALQVHNGLVYTAST 999 (1094)
Q Consensus 953 ~Dg~I~iwDl~~~~~~~--------------~~~~-----------~~~~~~--------h~~~V~sl~fs~~~~~las~ 999 (1094)
.|.++++.++..+.... ...+ ...+.. -.....+++++|++..++.|
T Consensus 382 ~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVG 461 (603)
T KOG0318|consen 382 WDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVG 461 (603)
T ss_pred cCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEe
Confidence 88888777663221100 0000 000111 12346688999999999999
Q ss_pred ECCCCEEEEEECCCCeEE---EEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcC
Q 001349 1000 SLDGAAVKMWSTSNYNMV---GSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDD 1074 (1094)
Q Consensus 1000 s~Dg~~I~iwd~~~~~~~---~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Sp 1074 (1094)
+.|+ .|+||.+...... ....|...|+.+++||| +|++|...+.+.+||+.+.+.......-|...|.+++|+|
T Consensus 462 G~Dg-kvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP 540 (603)
T KOG0318|consen 462 GQDG-KVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSP 540 (603)
T ss_pred cccc-eEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCC
Confidence 9997 7999999875532 44558999999999999 8999999999999999998875544445999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCC
Q 001349 1075 NEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1075 dg~~L~sgs~DG~I~iWdls 1094 (1094)
+..+++||+-|-.|.||++.
T Consensus 541 ~n~~vATGSlDt~Viiysv~ 560 (603)
T KOG0318|consen 541 NNKLVATGSLDTNVIIYSVK 560 (603)
T ss_pred CceEEEeccccceEEEEEcc
Confidence 99999999999999999874
No 21
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=3.8e-28 Score=249.04 Aligned_cols=247 Identities=17% Similarity=0.285 Sum_probs=213.1
Q ss_pred eeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 001349 806 VHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWS 883 (1094)
Q Consensus 806 ~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWd 883 (1094)
..++++|.+.|.++.|++| +|+|+|.||.+.|||.-|. ..++.+.-...+|..++|+|.|++++.|+.|+...||+
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Tt--nK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ 125 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTT--NKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYP 125 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccc--cceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEe
Confidence 3788999999999999998 9999999999999999887 56777777889999999999999999999999999999
Q ss_pred CCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC-CEEEEEEcCCeEEEEEC
Q 001349 884 IGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ-GKVYCGCQDGAIQEIDL 962 (1094)
Q Consensus 884 i~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~-~~l~sgs~Dg~I~iwDl 962 (1094)
+.+.+. +.+..+. -.+-.|.+++.|..|.+ ++|++|+.|.+..+||+
T Consensus 126 ls~~d~---------~g~~~v~-----------------------r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDi 173 (343)
T KOG0286|consen 126 LSTRDA---------EGNVRVS-----------------------RELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDI 173 (343)
T ss_pred cccccc---------cccceee-----------------------eeecCccceeEEEEEcCCCceEecCCCceEEEEEc
Confidence 986420 0000000 01223566677777754 67999999999999999
Q ss_pred CCCceeEEeccceeecCCCCCeEEEEEeC-CccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEE
Q 001349 963 ATGTFATIQTGHRKLLGKANPVHALQVHN-GLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYL 1038 (1094)
Q Consensus 963 ~~~~~~~~~~~~~~~~~h~~~V~sl~fs~-~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~s 1038 (1094)
++|+.. ..+.||.+.|.++.++| ++..+++|+-|. ..++||++.+.++++|. |.+.|+++.|.|+ -+++
T Consensus 174 e~g~~~------~~f~GH~gDV~slsl~p~~~ntFvSg~cD~-~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afat 246 (343)
T KOG0286|consen 174 ETGQQT------QVFHGHTGDVMSLSLSPSDGNTFVSGGCDK-SAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFAT 246 (343)
T ss_pred ccceEE------EEecCCcccEEEEecCCCCCCeEEeccccc-ceeeeeccCcceeEeecccccccceEEEccCCCeeee
Confidence 999988 67789999999999999 999999999996 99999999999999999 7899999999998 7999
Q ss_pred EEcCCeEEEEECCCCcEEEEeccc-CCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1039 GCKGGTVEIWDQKRQIRIETLQTG-TSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1039 gs~dg~I~vwd~~t~~~~~~l~~~-h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
|++|++.++||++..+.+..+... -...|++++||..|++|++|..|.++.+||.
T Consensus 247 GSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDt 302 (343)
T KOG0286|consen 247 GSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDT 302 (343)
T ss_pred cCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeec
Confidence 999999999999999988888521 1238999999999999999999999999995
No 22
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6.3e-29 Score=261.59 Aligned_cols=277 Identities=21% Similarity=0.316 Sum_probs=242.0
Q ss_pred EEeCC-cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeC
Q 001349 799 FWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSL 875 (1094)
Q Consensus 799 vWd~~-~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~ 875 (1094)
.|-.. ...+.+.+|...|+.+-|+|+ .+++++.|++|++||..++ ++...++||++.|.+|.|+..|++++++|.
T Consensus 93 ~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg--~~e~~LrGHt~sv~di~~~a~Gk~l~tcSs 170 (406)
T KOG0295|consen 93 LWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETG--ELERSLRGHTDSVFDISFDASGKYLATCSS 170 (406)
T ss_pred hcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccch--hhhhhhhccccceeEEEEecCccEEEecCC
Confidence 36555 566778889999999999998 8888899999999999999 679999999999999999999999999999
Q ss_pred CCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC------------CCCceEEEE
Q 001349 876 DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS------------SKYPKCLAL 943 (1094)
Q Consensus 876 DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~------------~~~v~~l~~ 943 (1094)
|-.+++||..+....+.....+...|.++. |-|.|.+++..+.|.+++.|+. ..+|+.+..
T Consensus 171 Dl~~~LWd~~~~~~c~ks~~gh~h~vS~V~-------f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v 243 (406)
T KOG0295|consen 171 DLSAKLWDFDTFFRCIKSLIGHEHGVSSVF-------FLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRV 243 (406)
T ss_pred ccchhheeHHHHHHHHHHhcCcccceeeEE-------EEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEe
Confidence 999999999874322233345666777777 9999999999999999999984 356777877
Q ss_pred eC-CE-EEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCC---------------ccEEEEEECCCCEE
Q 001349 944 VQ-GK-VYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG---------------LVYTASTSLDGAAV 1006 (1094)
Q Consensus 944 s~-~~-l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~---------------~~~las~s~Dg~~I 1006 (1094)
+. |. +++++.|.++++|-+.++.+. ..+.+|.-+|.+++|-|. +.++++++.|+ +|
T Consensus 244 ~~DGti~As~s~dqtl~vW~~~t~~~k------~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDk-tI 316 (406)
T KOG0295|consen 244 NQDGTIIASCSNDQTLRVWVVATKQCK------AELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDK-TI 316 (406)
T ss_pred cCCeeEEEecCCCceEEEEEeccchhh------hhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccc-eE
Confidence 75 33 788999999999999999776 556778889999988542 35889999996 99
Q ss_pred EEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEe
Q 001349 1007 KMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGT 1083 (1094)
Q Consensus 1007 ~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs 1083 (1094)
++||+.++.++.++. |..+|..++|+|. ||+++.+|++++|||++++++..++. .|...|++++|..+..+++||+
T Consensus 317 k~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~-ah~hfvt~lDfh~~~p~VvTGs 395 (406)
T KOG0295|consen 317 KIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE-AHEHFVTSLDFHKTAPYVVTGS 395 (406)
T ss_pred EEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC-CCcceeEEEecCCCCceEEecc
Confidence 999999999999998 7899999999987 99999999999999999999999994 9999999999999999999999
Q ss_pred CCCcEEEEe
Q 001349 1084 SDGRIQAWG 1092 (1094)
Q Consensus 1084 ~DG~I~iWd 1092 (1094)
-|.++++|.
T Consensus 396 Vdqt~KvwE 404 (406)
T KOG0295|consen 396 VDQTVKVWE 404 (406)
T ss_pred ccceeeeee
Confidence 999999996
No 23
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=7.8e-28 Score=272.81 Aligned_cols=271 Identities=21% Similarity=0.335 Sum_probs=224.5
Q ss_pred ccccccCcEEEEeeCC-CCeEEEeCCc--ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecc
Q 001349 779 SPLAFEMVKVLSNGHD-SSADFWNHRE--LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIRE 853 (1094)
Q Consensus 779 ~~~~~d~~~l~s~s~d-g~I~vWd~~~--~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~ 853 (1094)
..+...|.+++.|+.. |.+-||++.. -+...++|...+++++++|| +++||+.||.|+|||...+ -|+.+|..
T Consensus 313 ~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg--fC~vTFte 390 (893)
T KOG0291|consen 313 VSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG--FCFVTFTE 390 (893)
T ss_pred EEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCc--eEEEEecc
Confidence 3444559999998876 8999999984 34455789999999999998 9999999999999999999 89999999
Q ss_pred cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEc
Q 001349 854 HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN 933 (1094)
Q Consensus 854 H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~ 933 (1094)
|+..|+.+.|+.+|+.+++.|.||+|+.||+... +....+..+.++.-.. ++..|.|..
T Consensus 391 Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY--rNfRTft~P~p~Qfsc-----vavD~sGel-------------- 449 (893)
T KOG0291|consen 391 HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY--RNFRTFTSPEPIQFSC-----VAVDPSGEL-------------- 449 (893)
T ss_pred CCCceEEEEEEecCCEEEEeecCCeEEeeeeccc--ceeeeecCCCceeeeE-----EEEcCCCCE--------------
Confidence 9999999999999999999999999999999986 4444444444433221 113444443
Q ss_pred CCCCceEEEEeCCEEEEEEcCC-eEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECC
Q 001349 934 SSKYPKCLALVQGKVYCGCQDG-AIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTS 1012 (1094)
Q Consensus 934 ~~~~v~~l~~s~~~l~sgs~Dg-~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~ 1012 (1094)
+..|+.|. .|.+|++.+|+.+ ..+.||.+||.+++|+|.+..++++|.|. +||+||+-
T Consensus 450 --------------V~AG~~d~F~IfvWS~qTGqll------DiLsGHEgPVs~l~f~~~~~~LaS~SWDk-TVRiW~if 508 (893)
T KOG0291|consen 450 --------------VCAGAQDSFEIFVWSVQTGQLL------DILSGHEGPVSGLSFSPDGSLLASGSWDK-TVRIWDIF 508 (893)
T ss_pred --------------EEeeccceEEEEEEEeecCeee------ehhcCCCCcceeeEEccccCeEEeccccc-eEEEEEee
Confidence 44555554 5999999999998 67789999999999999999999999995 99999986
Q ss_pred C-CeEEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecc-------------------cCCcceEEE
Q 001349 1013 N-YNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQT-------------------GTSGKVQCM 1070 (1094)
Q Consensus 1013 ~-~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~-------------------~h~~~I~~l 1070 (1094)
. ...+.++.....+..++|+|| -+++++-||.|.+||...+..+..+.. ......+.+
T Consensus 509 ~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti 588 (893)
T KOG0291|consen 509 SSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTI 588 (893)
T ss_pred ccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEE
Confidence 4 346677888899999999998 799999999999999987766644421 112478999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1071 ALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1071 ~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
++|+||..+++||..+.|++||+
T Consensus 589 ~ySaDG~~IlAgG~sn~iCiY~v 611 (893)
T KOG0291|consen 589 CYSADGKCILAGGESNSICIYDV 611 (893)
T ss_pred EEcCCCCEEEecCCcccEEEEEC
Confidence 99999999999999999999987
No 24
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.8e-27 Score=241.83 Aligned_cols=274 Identities=17% Similarity=0.248 Sum_probs=229.3
Q ss_pred eeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCC-CcceeEEEe-cccCCCeEEEEEecCCCEEEEEeCCCcEE
Q 001349 806 VHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRG-SILHLIQQI-REHTKAVTGLAILQSGEMLYSGSLDKTAR 880 (1094)
Q Consensus 806 ~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t-~~~~~~~~l-~~H~~~V~sv~fspdg~~LaSgs~DgtI~ 880 (1094)
.+.+.+|.+.|..++|+|. .|+|++.|..|++|+... ..+.+...+ .+|+..|.+++|+|.|++|++||.|.++.
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~ 86 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVV 86 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEE
Confidence 4677899999999999996 799999999999999984 334555554 47999999999999999999999999999
Q ss_pred EEECCCCceEEEEec-ccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEc---------------CCCCceEEEEe
Q 001349 881 VWSIGNEEIHCVQVH-DIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN---------------SSKYPKCLALV 944 (1094)
Q Consensus 881 vWdi~~~~~~~~~~~-~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~---------------~~~~v~~l~~s 944 (1094)
||.-..++..++... .|...|.+++ |+++|+++++.+.+..+-+|. |...|..+.|+
T Consensus 87 Iw~k~~~efecv~~lEGHEnEVK~Va-------ws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WH 159 (312)
T KOG0645|consen 87 IWKKEDGEFECVATLEGHENEVKCVA-------WSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWH 159 (312)
T ss_pred EeecCCCceeEEeeeeccccceeEEE-------EcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEc
Confidence 999998888877665 5788999998 999999999999999998886 35668888888
Q ss_pred C--CEEEEEEcCCeEEEEECC-CCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec
Q 001349 945 Q--GKVYCGCQDGAIQEIDLA-TGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP 1021 (1094)
Q Consensus 945 ~--~~l~sgs~Dg~I~iwDl~-~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~ 1021 (1094)
| +.|++++.|++|++|+-. .+..... .++.+|...|.+++|++.|..+++++.|+ +++||-..+. -...
T Consensus 160 Pt~dlL~S~SYDnTIk~~~~~~dddW~c~----~tl~g~~~TVW~~~F~~~G~rl~s~sdD~-tv~Iw~~~~~---~~~~ 231 (312)
T KOG0645|consen 160 PTEDLLFSCSYDNTIKVYRDEDDDDWECV----QTLDGHENTVWSLAFDNIGSRLVSCSDDG-TVSIWRLYTD---LSGM 231 (312)
T ss_pred CCcceeEEeccCCeEEEEeecCCCCeeEE----EEecCccceEEEEEecCCCceEEEecCCc-ceEeeeeccC---cchh
Confidence 8 779999999999999876 3332221 67889999999999999999999999886 9999986521 1122
Q ss_pred CCCCEEEEEEeCCEEEEEEcCCeEEEEECCCC------cEEEEecccCCcceEEEEEcCC-CCEEEEEeCCCcEEEEeCC
Q 001349 1022 TLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQ------IRIETLQTGTSGKVQCMALDDN-EEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1022 ~~~~v~~l~~spd~l~sgs~dg~I~vwd~~t~------~~~~~l~~~h~~~I~~l~~Spd-g~~L~sgs~DG~I~iWdls 1094 (1094)
|...+..+.|..+.|++++.|+.|++|..... +.+......|...|+++.|+|. .++|++|++||.|++|.+.
T Consensus 232 ~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 232 HSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 66788899999669999999999999976542 2333334568889999999995 6899999999999999863
No 25
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.96 E-value=1.8e-28 Score=281.93 Aligned_cols=259 Identities=20% Similarity=0.321 Sum_probs=213.6
Q ss_pred cccccccCcEEEEeeCCCCeEEEeCCc---------------------------------ceeecccCCCcEEEEEEeCC
Q 001349 778 YSPLAFEMVKVLSNGHDSSADFWNHRE---------------------------------LVHVDSSENGKVLSIACFRD 824 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg~I~vWd~~~---------------------------------~~~~~~~h~~~V~~l~fspd 824 (1094)
...|+.|++.+|.|-.|..|++|.... ....+.||.++|..+.|+|+
T Consensus 383 ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd 462 (707)
T KOG0263|consen 383 CAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPD 462 (707)
T ss_pred eEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeeccc
Confidence 566777888999999999999997641 12347789999999999997
Q ss_pred --EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccce
Q 001349 825 --KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQ 902 (1094)
Q Consensus 825 --~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~ 902 (1094)
+|+++|.|++||+|.+.+. .++..++||..+||.+.|+|.|-++||+|.|++.++|..+......+. ..|-+.|.
T Consensus 463 ~rfLlScSED~svRLWsl~t~--s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRif-aghlsDV~ 539 (707)
T KOG0263|consen 463 RRFLLSCSEDSSVRLWSLDTW--SCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIF-AGHLSDVD 539 (707)
T ss_pred ccceeeccCCcceeeeecccc--eeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhh-cccccccc
Confidence 9999999999999999998 788999999999999999999999999999999999999875321111 12344455
Q ss_pred eeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCC
Q 001349 903 NLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKAN 982 (1094)
Q Consensus 903 ~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~ 982 (1094)
++. |.|++. .+++|+.|.+|++||+.+|..+ +.|.||.+
T Consensus 540 cv~-------FHPNs~----------------------------Y~aTGSsD~tVRlWDv~~G~~V------RiF~GH~~ 578 (707)
T KOG0263|consen 540 CVS-------FHPNSN----------------------------YVATGSSDRTVRLWDVSTGNSV------RIFTGHKG 578 (707)
T ss_pred eEE-------ECCccc----------------------------ccccCCCCceEEEEEcCCCcEE------EEecCCCC
Confidence 544 555555 3899999999999999999998 67788999
Q ss_pred CeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCc-----
Q 001349 983 PVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQI----- 1054 (1094)
Q Consensus 983 ~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~----- 1054 (1094)
+|++++|+|+|.++++|+.|| .|++||+.+++.+..+. |.+.|.++.|+.| .+++|+.|++|++||+....
T Consensus 579 ~V~al~~Sp~Gr~LaSg~ed~-~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~ 657 (707)
T KOG0263|consen 579 PVTALAFSPCGRYLASGDEDG-LIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNL 657 (707)
T ss_pred ceEEEEEcCCCceEeecccCC-cEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccc
Confidence 999999999999999999997 99999999999998887 7889999999998 89999999999999975422
Q ss_pred -------------------EEEEecccCCcceEEEEEcCCCCEEEEE
Q 001349 1055 -------------------RIETLQTGTSGKVQCMALDDNEEFLVIG 1082 (1094)
Q Consensus 1055 -------------------~~~~l~~~h~~~I~~l~~Spdg~~L~sg 1082 (1094)
++.++. ....+|.++.|....-.|++|
T Consensus 658 ~~~~~~~~~~~~~~~~~~~llgs~~-tK~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 658 GHISTSNSAITQENNASSLLLGSFY-TKNTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred cccccccccccccCCCCcceeeeee-ecCceEEEEEEeccceeEEec
Confidence 233332 233478888887655444444
No 26
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=8.1e-30 Score=265.26 Aligned_cols=232 Identities=28% Similarity=0.465 Sum_probs=202.4
Q ss_pred CCCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEE
Q 001349 812 ENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHC 891 (1094)
Q Consensus 812 h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~ 891 (1094)
....|+|+.|..+.+++|..|.+|+|||.++. .+++.+.||++.|.|+.| +.+.+++||.|.||+|||+++|+.
T Consensus 196 ~skgVYClQYDD~kiVSGlrDnTikiWD~n~~--~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~-- 269 (499)
T KOG0281|consen 196 NSKGVYCLQYDDEKIVSGLRDNTIKIWDKNSL--ECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEP-- 269 (499)
T ss_pred cCCceEEEEecchhhhcccccCceEEeccccH--HHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCch--
Confidence 45789999999999999999999999999988 789999999999999998 457999999999999999999852
Q ss_pred EEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEe
Q 001349 892 VQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQ 971 (1094)
Q Consensus 892 ~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~ 971 (1094)
+.+ ++.|...|..+.|++|.+++++.|.+|.+||+.....+
T Consensus 270 l~t------------------------------------lihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~i--- 310 (499)
T KOG0281|consen 270 LNT------------------------------------LIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDI--- 310 (499)
T ss_pred hhH------------------------------------HhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHH---
Confidence 111 12234455667778889999999999999999876633
Q ss_pred ccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCCEEEEEEcCCeEEEEEC
Q 001349 972 TGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSELVYLGCKGGTVEIWDQ 1050 (1094)
Q Consensus 972 ~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd~l~sgs~dg~I~vwd~ 1050 (1094)
...+.+.||...|+.+.|+.. |+++++.| ++|++|++.++..++++. |...|.|+.+...++++||.|++|++||+
T Consensus 311 t~rrVLvGHrAaVNvVdfd~k--yIVsASgD-RTikvW~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi 387 (499)
T KOG0281|consen 311 TLRRVLVGHRAAVNVVDFDDK--YIVSASGD-RTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDI 387 (499)
T ss_pred HHHHHHhhhhhheeeeccccc--eEEEecCC-ceEEEEeccceeeehhhhcccccceehhccCeEEEecCCCceEEEEec
Confidence 222567899999999999765 88888878 599999999999999998 67889999999889999999999999999
Q ss_pred CCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1051 KRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1051 ~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
..|.++..+ .||..-|.++.|. .+.+++|+.||+|+|||+.
T Consensus 388 ~~G~cLRvL-eGHEeLvRciRFd--~krIVSGaYDGkikvWdl~ 428 (499)
T KOG0281|consen 388 ECGACLRVL-EGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQ 428 (499)
T ss_pred cccHHHHHH-hchHHhhhheeec--CceeeeccccceEEEEecc
Confidence 999999999 5999999999994 7889999999999999974
No 27
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=3.2e-27 Score=300.39 Aligned_cols=275 Identities=18% Similarity=0.261 Sum_probs=216.8
Q ss_pred hhccccccccccCcEEEEeeCCCCeEEEeCCcce---------eecccCCCcEEEEEEeC---CEEEEEECCCeEEEEec
Q 001349 773 RELRKYSPLAFEMVKVLSNGHDSSADFWNHRELV---------HVDSSENGKVLSIACFR---DKIFSGHSDGTIKVWTG 840 (1094)
Q Consensus 773 ~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~~~---------~~~~~h~~~V~~l~fsp---d~LaSgs~Dg~I~vWd~ 840 (1094)
...+....|.+++.++++|+.|++|+||+..... .....+...|.+++|++ .+|++++.||+|++||+
T Consensus 483 ~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~ 562 (793)
T PLN00181 483 SNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDV 562 (793)
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEEC
Confidence 3344556778899999999999999999975210 11123457899999986 39999999999999999
Q ss_pred CCCcceeEEEecccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEee-CCC
Q 001349 841 RGSILHLIQQIREHTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIP-QGA 918 (1094)
Q Consensus 841 ~t~~~~~~~~l~~H~~~V~sv~fsp-dg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fsp-dg~ 918 (1094)
.++ ..+..+.+|.+.|++++|+| ++.+|+||+.||+|++||++++.. .........+.++. |.+ +|.
T Consensus 563 ~~~--~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~--~~~~~~~~~v~~v~-------~~~~~g~ 631 (793)
T PLN00181 563 ARS--QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS--IGTIKTKANICCVQ-------FPSESGR 631 (793)
T ss_pred CCC--eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE--EEEEecCCCeEEEE-------EeCCCCC
Confidence 988 78889999999999999997 789999999999999999988642 22222223444443 322 232
Q ss_pred eEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEE
Q 001349 919 GIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTAS 998 (1094)
Q Consensus 919 ~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las 998 (1094)
.+++|+.||.|++||++++.... ..+.+|...|+++.|. ++.++++
T Consensus 632 ----------------------------~latgs~dg~I~iwD~~~~~~~~-----~~~~~h~~~V~~v~f~-~~~~lvs 677 (793)
T PLN00181 632 ----------------------------SLAFGSADHKVYYYDLRNPKLPL-----CTMIGHSKTVSYVRFV-DSSTLVS 677 (793)
T ss_pred ----------------------------EEEEEeCCCeEEEEECCCCCccc-----eEecCCCCCEEEEEEe-CCCEEEE
Confidence 48899999999999998765321 4567899999999997 5667889
Q ss_pred EECCCCEEEEEECCC------CeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEec---------
Q 001349 999 TSLDGAAVKMWSTSN------YNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQ--------- 1060 (1094)
Q Consensus 999 ~s~Dg~~I~iwd~~~------~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~--------- 1060 (1094)
++.|+ +|++||++. +.++..+. |...+..++|+++ ++++|+.||.|++|+...+.++..+.
T Consensus 678 ~s~D~-~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~ 756 (793)
T PLN00181 678 SSTDN-TLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSG 756 (793)
T ss_pred EECCC-EEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccc
Confidence 99886 999999974 35667776 5677889999987 99999999999999987665443321
Q ss_pred ---ccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1061 ---TGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1061 ---~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
..|...|.+++|+|++..|++|+.||+|+||++
T Consensus 757 ~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 757 LEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred cccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 234557999999999999999999999999996
No 28
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=8e-27 Score=257.08 Aligned_cols=277 Identities=27% Similarity=0.448 Sum_probs=231.4
Q ss_pred HHhhhccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcc
Q 001349 770 KGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSIL 845 (1094)
Q Consensus 770 ~~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~ 845 (1094)
+.|...+....+.+++.++++++.||.|++|+.. ........|...+..+.|+++ .+++++.||.|++||+.++
T Consensus 6 ~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~-- 83 (289)
T cd00200 6 KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG-- 83 (289)
T ss_pred cccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc--
Confidence 3455556667778888999999999999999987 345667789999999999986 8999999999999999987
Q ss_pred eeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEe
Q 001349 846 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLR 925 (1094)
Q Consensus 846 ~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~ 925 (1094)
..+..+..|...|.++.|+++++++++++.||.|++||+.+++... ....+...+.++. |+|++.
T Consensus 84 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~i~~~~-------~~~~~~------- 148 (289)
T cd00200 84 ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLT-TLRGHTDWVNSVA-------FSPDGT------- 148 (289)
T ss_pred cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEE-EeccCCCcEEEEE-------EcCcCC-------
Confidence 6777888999999999999999999999889999999998754211 1123444555555 555443
Q ss_pred CCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCE
Q 001349 926 NGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAA 1005 (1094)
Q Consensus 926 ~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~ 1005 (1094)
.+++++.||.|++||+++++.. ..+..|...+.++.|++++..+++++.++ .
T Consensus 149 ---------------------~l~~~~~~~~i~i~d~~~~~~~------~~~~~~~~~i~~~~~~~~~~~l~~~~~~~-~ 200 (289)
T cd00200 149 ---------------------FVASSSQDGTIKLWDLRTGKCV------ATLTGHTGEVNSVAFSPDGEKLLSSSSDG-T 200 (289)
T ss_pred ---------------------EEEEEcCCCcEEEEEccccccc------eeEecCccccceEEECCCcCEEEEecCCC-c
Confidence 2556666999999999988766 34557778999999999998888888776 9
Q ss_pred EEEEECCCCeEEEEe-cCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEE
Q 001349 1006 VKMWSTSNYNMVGSL-PTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIG 1082 (1094)
Q Consensus 1006 I~iwd~~~~~~~~~~-~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sg 1082 (1094)
|++||+++++.+..+ .+...+.++.|+++ ++++++.||.|++||+.+++....+. +|...|.+++|+|++++|+++
T Consensus 201 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~ 279 (289)
T cd00200 201 IKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS-GHTNSVTSLAWSPDGKRLASG 279 (289)
T ss_pred EEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc-ccCCcEEEEEECCCCCEEEEe
Confidence 999999999988888 47779999999996 67777779999999999999988885 888899999999999999999
Q ss_pred eCCCcEEEEe
Q 001349 1083 TSDGRIQAWG 1092 (1094)
Q Consensus 1083 s~DG~I~iWd 1092 (1094)
+.||.|++|+
T Consensus 280 ~~d~~i~iw~ 289 (289)
T cd00200 280 SADGTIRIWD 289 (289)
T ss_pred cCCCeEEecC
Confidence 9999999996
No 29
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=1.7e-27 Score=282.24 Aligned_cols=272 Identities=26% Similarity=0.436 Sum_probs=228.7
Q ss_pred cccccccCcEEEEeeCCCCeEEEeCC--c--ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEec-CCCcceeEEE
Q 001349 778 YSPLAFEMVKVLSNGHDSSADFWNHR--E--LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTG-RGSILHLIQQ 850 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg~I~vWd~~--~--~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~-~t~~~~~~~~ 850 (1094)
...++++|..+++++.|+.+++|+.. . ....+.+|...|++++|+|+ ++++|+.|++|+|||+ ..+ ..+++
T Consensus 164 ~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~--~~~~~ 241 (456)
T KOG0266|consen 164 CVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG--RNLKT 241 (456)
T ss_pred EEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCC--eEEEE
Confidence 46788899999999999999999985 2 44556899999999999997 9999999999999999 444 78999
Q ss_pred ecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEE
Q 001349 851 IREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTK 930 (1094)
Q Consensus 851 l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~ 930 (1094)
+.+|...|++++|+|+|+++++|+.|++|+|||+++++. ......|.+.|.+++ |+++|+.
T Consensus 242 l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~-~~~l~~hs~~is~~~-------f~~d~~~----------- 302 (456)
T KOG0266|consen 242 LKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGEC-VRKLKGHSDGISGLA-------FSPDGNL----------- 302 (456)
T ss_pred ecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeE-EEeeeccCCceEEEE-------ECCCCCE-----------
Confidence 999999999999999999999999999999999999752 222334567888877 8888874
Q ss_pred EEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCC--CeEEEEEeCCccEEEEEECCCCEEEE
Q 001349 931 LLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKAN--PVHALQVHNGLVYTASTSLDGAAVKM 1008 (1094)
Q Consensus 931 l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~--~V~sl~fs~~~~~las~s~Dg~~I~i 1008 (1094)
+++++.|+.|++||+.++... ....+.++.. +++++.|+|++.++++++.|+ ++++
T Consensus 303 -----------------l~s~s~d~~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~-~~~~ 360 (456)
T KOG0266|consen 303 -----------------LVSASYDGTIRVWDLETGSKL----CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDR-TLKL 360 (456)
T ss_pred -----------------EEEcCCCccEEEEECCCCcee----eeecccCCCCCCceeEEEECCCCcEEEEecCCC-eEEE
Confidence 778889999999999999832 0033344443 599999999999999999885 9999
Q ss_pred EECCCCeEEEEec-CCCCE---EEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccC-CcceEEEEEcCCCCEEEE
Q 001349 1009 WSTSNYNMVGSLP-TLSEV---RAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGT-SGKVQCMALDDNEEFLVI 1081 (1094)
Q Consensus 1009 wd~~~~~~~~~~~-~~~~v---~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h-~~~I~~l~~Spdg~~L~s 1081 (1094)
||+..+.....+. |...+ .+...+++ ++++|+.|+.|++||..++..+..+ .+| ...+..+.|+|..+++++
T Consensus 361 w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l-~~h~~~~~~~~~~~~~~~~~~s 439 (456)
T KOG0266|consen 361 WDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRL-EGHSKAAVSDLSSHPTENLIAS 439 (456)
T ss_pred EEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhh-cCCCCCceeccccCCCcCeeee
Confidence 9999999888887 43333 22333444 8999999999999999999888888 588 889999999999999999
Q ss_pred Ee--CCCcEEEEeC
Q 001349 1082 GT--SDGRIQAWGL 1093 (1094)
Q Consensus 1082 gs--~DG~I~iWdl 1093 (1094)
++ .|+.|++|..
T Consensus 440 ~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 440 SSFEGDGLIRLWKY 453 (456)
T ss_pred cCcCCCceEEEecC
Confidence 98 7999999974
No 30
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=9.7e-28 Score=253.87 Aligned_cols=286 Identities=18% Similarity=0.285 Sum_probs=225.9
Q ss_pred cCcEEEEeeCCCCeEEEeCC-cceeecccCCCcEEEEEEeC-C----EEEEEECCCeEEEEecCCCcc--eeEEEecccC
Q 001349 784 EMVKVLSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACFR-D----KIFSGHSDGTIKVWTGRGSIL--HLIQQIREHT 855 (1094)
Q Consensus 784 d~~~l~s~s~dg~I~vWd~~-~~~~~~~~h~~~V~~l~fsp-d----~LaSgs~Dg~I~vWd~~t~~~--~~~~~l~~H~ 855 (1094)
-+..|++|++||++++||.. .......||.++|.+++|.. + .+++++.|.++++|.++.+.. +.+..-.||.
T Consensus 114 ~~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk 193 (423)
T KOG0313|consen 114 ASKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHK 193 (423)
T ss_pred cCceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccc
Confidence 37899999999999999998 67888999999999888863 3 699999999999998876632 2334445999
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCC
Q 001349 856 KAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS 935 (1094)
Q Consensus 856 ~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~ 935 (1094)
..|-+|...++|..+++||.|.+|+||+..+...........+..-... +-+. .+.....+.+-.|.
T Consensus 194 ~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~--------~~~~-----~~~r~P~vtl~GHt 260 (423)
T KOG0313|consen 194 RSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQK--------REKE-----GGTRTPLVTLEGHT 260 (423)
T ss_pred cceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhh--------hhhc-----ccccCceEEecccc
Confidence 9999999999999999999999999999443221111111000000000 0000 01122334556678
Q ss_pred CCceEEEEeC-CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCC
Q 001349 936 KYPKCLALVQ-GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNY 1014 (1094)
Q Consensus 936 ~~v~~l~~s~-~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~ 1014 (1094)
..|.++.|.+ +.+++++.|++|+.||+.++........ ...++++.+++...++++++.| +.+++||.+++
T Consensus 261 ~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~-------~ksl~~i~~~~~~~Ll~~gssd-r~irl~DPR~~ 332 (423)
T KOG0313|consen 261 EPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTT-------NKSLNCISYSPLSKLLASGSSD-RHIRLWDPRTG 332 (423)
T ss_pred cceeeEEEcCCCceEeecccceEEEEEeecccceeeeec-------CcceeEeecccccceeeecCCC-CceeecCCCCC
Confidence 8899999986 5699999999999999999998754332 3578999999999999999998 59999999875
Q ss_pred e---EEEEec-CCCCEEEEEEeCC---EEEEEEcCCeEEEEECCCCc-EEEEecccCCcceEEEEEcCCCCEEEEEeCCC
Q 001349 1015 N---MVGSLP-TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQI-RIETLQTGTSGKVQCMALDDNEEFLVIGTSDG 1086 (1094)
Q Consensus 1015 ~---~~~~~~-~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~~-~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG 1086 (1094)
. ..+++. |...|.++.|+|. .+++|+.||++++||+++.+ ++..+ .+|.+.|.++.|+ ++..+++||.|+
T Consensus 333 ~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI-~~h~DKvl~vdW~-~~~~IvSGGaD~ 410 (423)
T KOG0313|consen 333 DGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI-AGHNDKVLSVDWN-EGGLIVSGGADN 410 (423)
T ss_pred CCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceee-ccCCceEEEEecc-CCceEEeccCcc
Confidence 3 334454 7889999999997 79999999999999999887 89999 6999999999997 577999999999
Q ss_pred cEEEEe
Q 001349 1087 RIQAWG 1092 (1094)
Q Consensus 1087 ~I~iWd 1092 (1094)
+|+|+.
T Consensus 411 ~l~i~~ 416 (423)
T KOG0313|consen 411 KLRIFK 416 (423)
T ss_pred eEEEec
Confidence 999985
No 31
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.96 E-value=4.1e-27 Score=255.06 Aligned_cols=268 Identities=19% Similarity=0.292 Sum_probs=231.2
Q ss_pred cccccccCcEEEEeeCCCCeEEEeCC-cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEeccc
Q 001349 778 YSPLAFEMVKVLSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREH 854 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg~I~vWd~~-~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H 854 (1094)
...+..+|..||+|+.||.+++|+.. ....++..|.++|.++.|+.+ +|++++.||++.+||..++ ...+.+.-|
T Consensus 240 ~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g--~~~q~f~~~ 317 (524)
T KOG0273|consen 240 SLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG--TVKQQFEFH 317 (524)
T ss_pred eEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc--eEEEeeeec
Confidence 45677789999999999999999998 677888999999999999985 9999999999999999999 677777778
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC
Q 001349 855 TKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS 934 (1094)
Q Consensus 855 ~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~ 934 (1094)
..+-..|.|-. ...+++.+.||.|+|+.+......... ..|.++|..+. |.|.|.
T Consensus 318 s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~-~GH~g~V~alk-------~n~tg~---------------- 372 (524)
T KOG0273|consen 318 SAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTF-IGHHGEVNALK-------WNPTGS---------------- 372 (524)
T ss_pred cCCccceEEec-CceEeecCCCceEEEEEecCCCcceee-ecccCceEEEE-------ECCCCc----------------
Confidence 88877888864 467899999999999999875422222 22566666666 555555
Q ss_pred CCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCC---------ccEEEEEECCCCE
Q 001349 935 SKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG---------LVYTASTSLDGAA 1005 (1094)
Q Consensus 935 ~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~---------~~~las~s~Dg~~ 1005 (1094)
.|++++.|+++++|....+... ..+.+|...|+.+.|+|. +..+++++.|+ +
T Consensus 373 ------------LLaS~SdD~TlkiWs~~~~~~~------~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~ds-t 433 (524)
T KOG0273|consen 373 ------------LLASCSDDGTLKIWSMGQSNSV------HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDS-T 433 (524)
T ss_pred ------------eEEEecCCCeeEeeecCCCcch------hhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCC-e
Confidence 3889999999999998888776 678899999999999875 45788888886 9
Q ss_pred EEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEE
Q 001349 1006 VKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIG 1082 (1094)
Q Consensus 1006 I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sg 1082 (1094)
|++||+..+.++.+|. |..+|.+++|+|+ ++++|+.||.|.+|+..+++.++.+. ..+.|..++|+.+|.+|..+
T Consensus 434 V~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~--~~~~Ifel~Wn~~G~kl~~~ 511 (524)
T KOG0273|consen 434 VKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ--GTGGIFELCWNAAGDKLGAC 511 (524)
T ss_pred EEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeec--CCCeEEEEEEcCCCCEEEEE
Confidence 9999999999999995 9999999999998 99999999999999999999999994 44579999999999999999
Q ss_pred eCCCcEEEEeC
Q 001349 1083 TSDGRIQAWGL 1093 (1094)
Q Consensus 1083 s~DG~I~iWdl 1093 (1094)
-.||.+++-|+
T Consensus 512 ~sd~~vcvldl 522 (524)
T KOG0273|consen 512 ASDGSVCVLDL 522 (524)
T ss_pred ecCCCceEEEe
Confidence 99999999886
No 32
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=1.6e-28 Score=246.10 Aligned_cols=270 Identities=20% Similarity=0.326 Sum_probs=232.1
Q ss_pred cccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecc
Q 001349 778 YSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIRE 853 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~ 853 (1094)
++++.++|-++++++.||.--+-+-+ ..+-++.+|.+.|++.+.+.| .-++++.|-+-+|||.-+| ..++.+ .
T Consensus 22 ~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tg--delhsf-~ 98 (334)
T KOG0278|consen 22 FSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTG--DELHSF-E 98 (334)
T ss_pred ccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhh--hhhhhh-h
Confidence 67888899999999999987666544 567789999999999999988 8889999999999999999 678887 4
Q ss_pred cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEc
Q 001349 854 HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN 933 (1094)
Q Consensus 854 H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~ 933 (1094)
|..-|.+++|+.|.++|+||+.++.+||+|++..+-.......+.+.|..+. |...
T Consensus 99 hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~-------wc~e----------------- 154 (334)
T KOG0278|consen 99 HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVL-------WCHE----------------- 154 (334)
T ss_pred hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEE-------Eecc-----------------
Confidence 9999999999999999999999999999999886544444444555555554 2222
Q ss_pred CCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCC
Q 001349 934 SSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSN 1013 (1094)
Q Consensus 934 ~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~ 1013 (1094)
+..|++.+.|++|++||.++++.+..+. ...+|+++.+++++.++..+ +|+.|++||..+
T Consensus 155 -----------D~~iLSSadd~tVRLWD~rTgt~v~sL~-------~~s~VtSlEvs~dG~ilTia--~gssV~Fwdaks 214 (334)
T KOG0278|consen 155 -----------DKCILSSADDKTVRLWDHRTGTEVQSLE-------FNSPVTSLEVSQDGRILTIA--YGSSVKFWDAKS 214 (334)
T ss_pred -----------CceEEeeccCCceEEEEeccCcEEEEEe-------cCCCCcceeeccCCCEEEEe--cCceeEEecccc
Confidence 2347788999999999999999875432 23689999999999988776 467999999999
Q ss_pred CeEEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEE
Q 001349 1014 YNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAW 1091 (1094)
Q Consensus 1014 ~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iW 1091 (1094)
...++.+.-+..|.+...+|+ .+++|++|..++.||..+|..+..+..+|.++|.|+.|+|||..-++||.||+|++|
T Consensus 215 f~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlW 294 (334)
T KOG0278|consen 215 FGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLW 294 (334)
T ss_pred ccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEE
Confidence 999999999999999999998 899999999999999999999999767999999999999999999999999999999
Q ss_pred eCC
Q 001349 1092 GLS 1094 (1094)
Q Consensus 1092 dls 1094 (1094)
.++
T Consensus 295 Qt~ 297 (334)
T KOG0278|consen 295 QTT 297 (334)
T ss_pred Eec
Confidence 863
No 33
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.2e-27 Score=238.04 Aligned_cols=272 Identities=18% Similarity=0.322 Sum_probs=224.4
Q ss_pred HhhhccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcce
Q 001349 771 GLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILH 846 (1094)
Q Consensus 771 ~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~ 846 (1094)
..+..++..-+.-||+|.++++.|.+|++|+.. .+++++.+|...|..++.+.| .+++|+.|..|.+||+.+| +
T Consensus 15 ~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TG--k 92 (307)
T KOG0316|consen 15 CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTG--K 92 (307)
T ss_pred ccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccC--e
Confidence 344556677788899999999999999999987 678999999999999998875 9999999999999999999 8
Q ss_pred eEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeC
Q 001349 847 LIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRN 926 (1094)
Q Consensus 847 ~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~ 926 (1094)
.++.+.+|.+.|+.+.|+.+...+++||.|.++++||.++.....++...
T Consensus 93 v~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQild------------------------------ 142 (307)
T KOG0316|consen 93 VDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILD------------------------------ 142 (307)
T ss_pred eeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhh------------------------------
Confidence 99999999999999999999999999999999999999986544433321
Q ss_pred CeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEE
Q 001349 927 GKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAV 1006 (1094)
Q Consensus 927 g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I 1006 (1094)
.....|.++...+..|++|+.||+++.||++.|+.... .. ..+|+++.|++++.....++.|+ ++
T Consensus 143 ------ea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sD------y~--g~pit~vs~s~d~nc~La~~l~s-tl 207 (307)
T KOG0316|consen 143 ------EAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSD------YF--GHPITSVSFSKDGNCSLASSLDS-TL 207 (307)
T ss_pred ------hhcCceeEEEecccEEEeeccCCcEEEEEeecceeehh------hc--CCcceeEEecCCCCEEEEeeccc-ee
Confidence 01233455555566799999999999999999987632 22 35899999999999999999996 99
Q ss_pred EEEECCCCeEEEEecCCCC---EEEEEEeC-C-EEEEEEcCCeEEEEECCCCcEEEEecccCCcc-eEEEEEcCCCCEEE
Q 001349 1007 KMWSTSNYNMVGSLPTLSE---VRAMVVSS-E-LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGK-VQCMALDDNEEFLV 1080 (1094)
Q Consensus 1007 ~iwd~~~~~~~~~~~~~~~---v~~l~~sp-d-~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~-I~~l~~Spdg~~L~ 1080 (1094)
++.|-.+|+.+..+.++.+ -...++.. + .+++|++||.|++||+...+.+..+. .|... |.++.++|.-..|+
T Consensus 208 rLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~-~~~~v~v~dl~~hp~~~~f~ 286 (307)
T KOG0316|consen 208 RLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLS-VVSTVIVTDLSCHPTMDDFI 286 (307)
T ss_pred eecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeec-cCCceeEEeeecccCcccee
Confidence 9999999999998884322 12233333 2 89999999999999999999999984 55555 89999999888788
Q ss_pred EEeCCCcEEEE
Q 001349 1081 IGTSDGRIQAW 1091 (1094)
Q Consensus 1081 sgs~DG~I~iW 1091 (1094)
++... .+..|
T Consensus 287 ~A~~~-~~~~~ 296 (307)
T KOG0316|consen 287 TATGH-GDLFW 296 (307)
T ss_pred EecCC-ceece
Confidence 77644 45555
No 34
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=1e-26 Score=264.20 Aligned_cols=290 Identities=21% Similarity=0.291 Sum_probs=250.8
Q ss_pred CcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeC---CEEEEEECCCeEEEEecCCCcceeEEEecccCCCeE
Q 001349 785 MVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFR---DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVT 859 (1094)
Q Consensus 785 ~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fsp---d~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~ 859 (1094)
...++....|..+.++|.+ +....+.|.++.|..++|-+ ++++.++..+.+|+|+..+. .+. .+.||+..|.
T Consensus 293 ~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~--~c~-ii~GH~e~vl 369 (775)
T KOG0319|consen 293 MSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTS--YCQ-IIPGHTEAVL 369 (775)
T ss_pred cCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCC--ceE-EEeCchhhee
Confidence 4566677788899999887 45666788999999999987 49999999999999999987 333 7889999999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCCce---EEEEecccCccceeeeecCceEEEeeCC-CeEEEEEeCCeEEEEcC-
Q 001349 860 GLAILQSGEMLYSGSLDKTARVWSIGNEEI---HCVQVHDIKDQIQNLAVSNSILCFIPQG-AGIKVHLRNGKTKLLNS- 934 (1094)
Q Consensus 860 sv~fspdg~~LaSgs~DgtI~vWdi~~~~~---~~~~~~~~~~~V~~v~~~~~~~~fspdg-~~l~~~~~~g~i~l~~~- 934 (1094)
+++...+|.+|+|||.|+++++|.++.+.. .......|...|.+++ ++..+ ..+++.+.|.++++|+.
T Consensus 370 SL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava-------~~~~~asffvsvS~D~tlK~W~l~ 442 (775)
T KOG0319|consen 370 SLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVA-------GSKLGASFFVSVSQDCTLKLWDLP 442 (775)
T ss_pred eeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceee-------ecccCccEEEEecCCceEEEecCC
Confidence 999667889999999999999999855431 1222345777888887 54444 36778888999999974
Q ss_pred --------------------CCCceEEEEeCC--EEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCC
Q 001349 935 --------------------SKYPKCLALVQG--KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG 992 (1094)
Q Consensus 935 --------------------~~~v~~l~~s~~--~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~ 992 (1094)
.+.|+|++++++ .+++||.|.+.++|++.+.... .++.||...|.++.|++.
T Consensus 443 ~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~------~vLsGH~RGvw~V~Fs~~ 516 (775)
T KOG0319|consen 443 KSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLL------GVLSGHTRGVWCVSFSKN 516 (775)
T ss_pred CcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEE------EEeeCCccceEEEEeccc
Confidence 456899999864 4899999999999999977776 678899999999999999
Q ss_pred ccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEE
Q 001349 993 LVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQC 1069 (1094)
Q Consensus 993 ~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~ 1069 (1094)
...++++|.|. +|+||.+.++.++++|. |...|....|-.+ .+++++.||-|++|++.++.++.++ .+|.+.|++
T Consensus 517 dq~laT~SgD~-TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tl-D~H~DrvWa 594 (775)
T KOG0319|consen 517 DQLLATCSGDK-TVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTL-DAHNDRVWA 594 (775)
T ss_pred cceeEeccCCc-eEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhh-hhccceeEE
Confidence 99999999996 99999999999999999 7788988888765 8999999999999999999999999 699999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1070 MALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1070 l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
++.+|++.+++||+.||.|.+|.
T Consensus 595 L~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 595 LSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred EeecCccceeEecCCCeEEEEee
Confidence 99999999999999999999994
No 35
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.95 E-value=2.4e-27 Score=248.35 Aligned_cols=244 Identities=23% Similarity=0.382 Sum_probs=209.6
Q ss_pred EeCC-cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCC
Q 001349 800 WNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD 876 (1094)
Q Consensus 800 Wd~~-~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~D 876 (1094)
|... ....++.+|.+.|.|+++.|. +|+||+.|++|+|||+.++ ++..++.||-..|..++||+-..|+++++.|
T Consensus 137 WHapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg--~LkltltGhi~~vr~vavS~rHpYlFs~ged 214 (460)
T KOG0285|consen 137 WHAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATG--QLKLTLTGHIETVRGVAVSKRHPYLFSAGED 214 (460)
T ss_pred ccCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccC--eEEEeecchhheeeeeeecccCceEEEecCC
Confidence 4444 455788999999999999994 9999999999999999999 7888999999999999999999999999999
Q ss_pred CcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC--CEEEEEEcC
Q 001349 877 KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ--GKVYCGCQD 954 (1094)
Q Consensus 877 gtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~--~~l~sgs~D 954 (1094)
+.|+-||+..++. ....+.|-+. |.|+..+| +.|++|+.|
T Consensus 215 k~VKCwDLe~nkv-IR~YhGHlS~-------------------------------------V~~L~lhPTldvl~t~grD 256 (460)
T KOG0285|consen 215 KQVKCWDLEYNKV-IRHYHGHLSG-------------------------------------VYCLDLHPTLDVLVTGGRD 256 (460)
T ss_pred CeeEEEechhhhh-HHHhccccce-------------------------------------eEEEeccccceeEEecCCc
Confidence 9999999998641 1111223333 44555543 469999999
Q ss_pred CeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeC
Q 001349 955 GAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSS 1033 (1094)
Q Consensus 955 g~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~sp 1033 (1094)
.++++||+++...+ ..+.||..+|.++.+.+-...+++++.|+ +|++||++.|+...++. |...+.+++.+|
T Consensus 257 st~RvWDiRtr~~V------~~l~GH~~~V~~V~~~~~dpqvit~S~D~-tvrlWDl~agkt~~tlt~hkksvral~lhP 329 (460)
T KOG0285|consen 257 STIRVWDIRTRASV------HVLSGHTNPVASVMCQPTDPQVITGSHDS-TVRLWDLRAGKTMITLTHHKKSVRALCLHP 329 (460)
T ss_pred ceEEEeeecccceE------EEecCCCCcceeEEeecCCCceEEecCCc-eEEEeeeccCceeEeeecccceeeEEecCC
Confidence 99999999999888 67889999999999999888899999997 99999999999888887 678899999999
Q ss_pred C--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1034 E--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1034 d--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
+ .+++++.| .|+-|++..|..+..+ .+|.+.|++++.+.|| ++++|+++|.+.+||-
T Consensus 330 ~e~~fASas~d-nik~w~~p~g~f~~nl-sgh~~iintl~~nsD~-v~~~G~dng~~~fwdw 388 (460)
T KOG0285|consen 330 KENLFASASPD-NIKQWKLPEGEFLQNL-SGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDW 388 (460)
T ss_pred chhhhhccCCc-cceeccCCccchhhcc-ccccceeeeeeeccCc-eEEEcCCceEEEEEec
Confidence 8 46666655 6999999999999997 7999999999998776 7899999999999984
No 36
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=8.9e-27 Score=259.04 Aligned_cols=272 Identities=19% Similarity=0.293 Sum_probs=229.9
Q ss_pred hccccccccccCcEEEEeeCCCCeEEEeCCc--ceeecccCCCcEEEEEEeC--CEEEEEECCCeEEEEecCCCcceeEE
Q 001349 774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFR--DKIFSGHSDGTIKVWTGRGSILHLIQ 849 (1094)
Q Consensus 774 ~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~fsp--d~LaSgs~Dg~I~vWd~~t~~~~~~~ 849 (1094)
..++...+.|--.+++++-++|.|.|||+.+ ....+.-..-+|.+..|-+ +++++|+.|+.|+||+..|+ ..+.
T Consensus 14 dRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~--ekV~ 91 (794)
T KOG0276|consen 14 DRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG--EKVK 91 (794)
T ss_pred CceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccc--eeeE
Confidence 3455666667677999999999999999984 4555566678999999987 59999999999999999999 8999
Q ss_pred EecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEec-ccCccceeeeecCceEEEeeCCCeEEEEEeCCe
Q 001349 850 QIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVH-DIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGK 928 (1094)
Q Consensus 850 ~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~-~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~ 928 (1094)
+|..|.+.|.+++.+|.-.+++|+|+|-+|++||.+.+ ..+.+.+ .|..-|.+++ |.|...
T Consensus 92 ~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~-wa~~qtfeGH~HyVMqv~-------fnPkD~---------- 153 (794)
T KOG0276|consen 92 TFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE-WACEQTFEGHEHYVMQVA-------FNPKDP---------- 153 (794)
T ss_pred EeeccccceeeeeecCCCCeEEecCCccEEEEeeccCc-eeeeeEEcCcceEEEEEE-------ecCCCc----------
Confidence 99999999999999999999999999999999999885 3444333 3444455554 444332
Q ss_pred EEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeC--CccEEEEEECCCCEE
Q 001349 929 TKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN--GLVYTASTSLDGAAV 1006 (1094)
Q Consensus 929 i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~--~~~~las~s~Dg~~I 1006 (1094)
+.++++|-|++|++|.+.+..+. .++.+|...|+|+.|.+ |..++++|+.| .++
T Consensus 154 -----------------ntFaS~sLDrTVKVWslgs~~~n------fTl~gHekGVN~Vdyy~~gdkpylIsgaDD-~ti 209 (794)
T KOG0276|consen 154 -----------------NTFASASLDRTVKVWSLGSPHPN------FTLEGHEKGVNCVDYYTGGDKPYLISGADD-LTI 209 (794)
T ss_pred -----------------cceeeeeccccEEEEEcCCCCCc------eeeeccccCcceEEeccCCCcceEEecCCC-ceE
Confidence 46999999999999999888776 67789999999999974 56799999877 599
Q ss_pred EEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEe
Q 001349 1007 KMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGT 1083 (1094)
Q Consensus 1007 ~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs 1083 (1094)
+|||..+..|++++. |..+|..+.|+|. .+++|++||+++||+..+.+...++. -..++|++++-.+.+..++.|.
T Consensus 210 KvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn-~gleRvW~I~~~k~~~~i~vG~ 288 (794)
T KOG0276|consen 210 KVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLN-YGLERVWCIAAHKGDGKIAVGF 288 (794)
T ss_pred EEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhh-cCCceEEEEeecCCCCeEEEec
Confidence 999999999999999 7889999999999 89999999999999999988888874 4456899999999888899998
Q ss_pred CCCcEEE
Q 001349 1084 SDGRIQA 1090 (1094)
Q Consensus 1084 ~DG~I~i 1090 (1094)
+.|.|.+
T Consensus 289 Deg~i~v 295 (794)
T KOG0276|consen 289 DEGSVTV 295 (794)
T ss_pred cCCcEEE
Confidence 8887654
No 37
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.3e-26 Score=266.05 Aligned_cols=276 Identities=18% Similarity=0.291 Sum_probs=216.2
Q ss_pred ccccccccC--cEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEE
Q 001349 777 KYSPLAFEM--VKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQ 850 (1094)
Q Consensus 777 ~~~~~~~d~--~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~ 850 (1094)
+.-.++|.+ -+++++-.+|.|++||+. +++..+..|.|+|..++|+|. +++||+.|.+|+||+..+. +++.+
T Consensus 11 RvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r--rclft 88 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR--RCLFT 88 (1202)
T ss_pred cccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc--eehhh
Confidence 334444444 489999999999999998 788889999999999999996 9999999999999999999 89999
Q ss_pred ecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEE
Q 001349 851 IREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTK 930 (1094)
Q Consensus 851 l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~ 930 (1094)
+.||-+.|..+.|++.-.+|+|+|+|.||+||++.+++..++. ..|..-|.+.. |.|..
T Consensus 89 L~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavl-tGHnHYVMcAq-------FhptE------------- 147 (1202)
T KOG0292|consen 89 LLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVL-TGHNHYVMCAQ-------FHPTE------------- 147 (1202)
T ss_pred hccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEE-ecCceEEEeec-------cCCcc-------------
Confidence 9999999999999999999999999999999999997422111 12233333333 44433
Q ss_pred EEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEE------------------e-----ccceeecCCCCCeEEE
Q 001349 931 LLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATI------------------Q-----TGHRKLLGKANPVHAL 987 (1094)
Q Consensus 931 l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~------------------~-----~~~~~~~~h~~~V~sl 987 (1094)
+.++++|-|.+|++||+..-+.... + .....+.||...|+-+
T Consensus 148 ---------------DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwa 212 (1202)
T KOG0292|consen 148 ---------------DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWA 212 (1202)
T ss_pred ---------------ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceE
Confidence 3467777777777777642111000 0 0014578999999999
Q ss_pred EEeCCccEEEEEECCCCEEEEEECCCCeE--EEEec-CCCCEEEEEEeC--CEEEEEEcCCeEEEEECCCCcEEEEeccc
Q 001349 988 QVHNGLVYTASTSLDGAAVKMWSTSNYNM--VGSLP-TLSEVRAMVVSS--ELVYLGCKGGTVEIWDQKRQIRIETLQTG 1062 (1094)
Q Consensus 988 ~fs~~~~~las~s~Dg~~I~iwd~~~~~~--~~~~~-~~~~v~~l~~sp--d~l~sgs~dg~I~vwd~~t~~~~~~l~~~ 1062 (1094)
+|+|...++++|+.| +.|++|.+...+. +.+.. |..+|.++-|+| +.+++.|+|++|+|||+...+.+++|..
T Consensus 213 AfhpTlpliVSG~DD-RqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrr- 290 (1202)
T KOG0292|consen 213 AFHPTLPLIVSGADD-RQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRR- 290 (1202)
T ss_pred EecCCcceEEecCCc-ceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeec-
Confidence 999999999999866 6999999875432 22333 789999999999 5999999999999999999999999964
Q ss_pred CCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1063 TSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1063 h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
..++.|.++-+|..+++++|-+.| +-+|.+
T Consensus 291 endRFW~laahP~lNLfAAgHDsG-m~VFkl 320 (1202)
T KOG0292|consen 291 ENDRFWILAAHPELNLFAAGHDSG-MIVFKL 320 (1202)
T ss_pred cCCeEEEEEecCCcceeeeecCCc-eEEEEE
Confidence 345899999999999888776555 555544
No 38
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.95 E-value=4.1e-26 Score=229.05 Aligned_cols=255 Identities=19% Similarity=0.312 Sum_probs=214.1
Q ss_pred cccccccCcEEEEeeCCCCeEEEeCC----cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEe
Q 001349 778 YSPLAFEMVKVLSNGHDSSADFWNHR----ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQI 851 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg~I~vWd~~----~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l 851 (1094)
-..+.+|++.|++++.. .||+||+. .++..+.+|++.|+++.|.-+ .++||+.||+++|||++.. .+.+.+
T Consensus 45 rLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~--~~qR~~ 121 (311)
T KOG0315|consen 45 RLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL--SCQRNY 121 (311)
T ss_pred eEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCc--ccchhc
Confidence 34566788888887764 79999997 467889999999999999986 9999999999999999986 555555
Q ss_pred cccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEE
Q 001349 852 REHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKL 931 (1094)
Q Consensus 852 ~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l 931 (1094)
.|..+|+++..+|+...|++|..+|.|++||+......+....+...+|.++. +.|||+.
T Consensus 122 -~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~-------v~~dgsm------------ 181 (311)
T KOG0315|consen 122 -QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLT-------VMPDGSM------------ 181 (311)
T ss_pred -cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEE-------EcCCCcE------------
Confidence 58899999999999999999999999999999987555555555566777776 7778775
Q ss_pred EcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEEC
Q 001349 932 LNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWST 1011 (1094)
Q Consensus 932 ~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~ 1011 (1094)
++.+...|..++|++-++.....+.+..++..|..-+....++|++.++++++.|. +++||++
T Consensus 182 ----------------l~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdk-tv~iwn~ 244 (311)
T KOG0315|consen 182 ----------------LAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDK-TVKIWNT 244 (311)
T ss_pred ----------------EEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCc-eEEEEec
Confidence 66667778899999988776666666678999999999999999999999999995 9999999
Q ss_pred CCC-eEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEc
Q 001349 1012 SNY-NMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALD 1073 (1094)
Q Consensus 1012 ~~~-~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~S 1073 (1094)
.+. +....+. |...++..+||.| ||++|+.|+.+++||+..++.+..+. ||-....|++..
T Consensus 245 ~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~-gh~K~~vc~~ln 309 (311)
T KOG0315|consen 245 DDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQ-GHHKAAVCVALN 309 (311)
T ss_pred CCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecC-CcccccEEEEee
Confidence 987 4444555 6789999999998 99999999999999999999999994 776666676653
No 39
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=1.4e-26 Score=234.66 Aligned_cols=268 Identities=19% Similarity=0.229 Sum_probs=222.4
Q ss_pred ecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 001349 808 VDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIG 885 (1094)
Q Consensus 808 ~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~ 885 (1094)
.+.||..+++.+.|+.+ +|+|++.|.++.||-..+| ..+.++.||++.||+++.+.+.+.++||+.|.++++||+.
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG--erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG--ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCC--ceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence 46799999999999974 9999999999999998888 7899999999999999999999999999999999999999
Q ss_pred CCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeC-----CeEEEEcC-------------------CCCceEE
Q 001349 886 NEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRN-----GKTKLLNS-------------------SKYPKCL 941 (1094)
Q Consensus 886 ~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~-----g~i~l~~~-------------------~~~v~~l 941 (1094)
+| +++.....+.+|..+. |+++|+.++....+ +.+.+++. ...+...
T Consensus 83 tG--k~la~~k~~~~Vk~~~-------F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a 153 (327)
T KOG0643|consen 83 TG--KQLATWKTNSPVKRVD-------FSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSA 153 (327)
T ss_pred CC--cEEEEeecCCeeEEEe-------eccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeee
Confidence 99 5566666788899888 88888877766544 34455543 3445666
Q ss_pred EEeC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEE
Q 001349 942 ALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGS 1019 (1094)
Q Consensus 942 ~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~ 1019 (1094)
.|.+ ..|++|..||.|..||.++|.... .....|...|+.+.++++..++++++.|. +-++||..+-+.+++
T Consensus 154 ~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v-----~s~~~h~~~Ind~q~s~d~T~FiT~s~Dt-takl~D~~tl~v~Kt 227 (327)
T KOG0643|consen 154 LWGPLGETIIAGHEDGSISIYDARTGKELV-----DSDEEHSSKINDLQFSRDRTYFITGSKDT-TAKLVDVRTLEVLKT 227 (327)
T ss_pred eecccCCEEEEecCCCcEEEEEcccCceee-----echhhhccccccccccCCcceEEecccCc-cceeeeccceeeEEE
Confidence 6654 569999999999999999987653 34456888999999999999999999995 999999999999999
Q ss_pred ecCCCCEEEEEEeCC--EEEEEEcCCe--EE------------EEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEe
Q 001349 1020 LPTLSEVRAMVVSSE--LVYLGCKGGT--VE------------IWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGT 1083 (1094)
Q Consensus 1020 ~~~~~~v~~l~~spd--~l~sgs~dg~--I~------------vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs 1083 (1094)
+....+|++.+++|. .++.|+.... |. +|++-..+.+..+ .+|-++|++++|+|||+..++|+
T Consensus 228 y~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrv-kGHFGPINsvAfhPdGksYsSGG 306 (327)
T KOG0643|consen 228 YTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRV-KGHFGPINSVAFHPDGKSYSSGG 306 (327)
T ss_pred eeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccc-cccccCcceeEECCCCcccccCC
Confidence 999999999999995 6666654322 22 2222222345566 48999999999999999999999
Q ss_pred CCCcEEEEeC
Q 001349 1084 SDGRIQAWGL 1093 (1094)
Q Consensus 1084 ~DG~I~iWdl 1093 (1094)
.||.|++..+
T Consensus 307 EDG~VR~h~F 316 (327)
T KOG0643|consen 307 EDGYVRLHHF 316 (327)
T ss_pred CCceEEEEEe
Confidence 9999998643
No 40
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.4e-26 Score=242.15 Aligned_cols=262 Identities=20% Similarity=0.282 Sum_probs=227.9
Q ss_pred hhhccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCccee
Q 001349 772 LRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHL 847 (1094)
Q Consensus 772 ~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~ 847 (1094)
++..+....+.++-..+++++.|++|++||.. +....++||++.|..|+|+.. ++++++.|-.+++||..+. ..+
T Consensus 107 ~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~-~~c 185 (406)
T KOG0295|consen 107 HRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF-FRC 185 (406)
T ss_pred cccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHH-HHH
Confidence 34444444555566678899999999999997 567789999999999999974 9999999999999999875 478
Q ss_pred EEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEec-ccCccceeeeecCceEEEeeCCCeEEEEEeC
Q 001349 848 IQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVH-DIKDQIQNLAVSNSILCFIPQGAGIKVHLRN 926 (1094)
Q Consensus 848 ~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~-~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~ 926 (1094)
++.+.+|...|.++.|-|.|.+++|++.|.+|+.|++.+| .++... .+...|..+. ...||..++.++.+
T Consensus 186 ~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg--~cv~t~~~h~ewvr~v~-------v~~DGti~As~s~d 256 (406)
T KOG0295|consen 186 IKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTG--YCVKTFPGHSEWVRMVR-------VNQDGTIIASCSND 256 (406)
T ss_pred HHHhcCcccceeeEEEEecCCeeeecccccceeEEecccc--eeEEeccCchHhEEEEE-------ecCCeeEEEecCCC
Confidence 8899999999999999999999999999999999999998 444443 5677888877 88899999999999
Q ss_pred CeEEEEcC------------CCCceEEEEeC-----------C------EEEEEEcCCeEEEEECCCCceeEEeccceee
Q 001349 927 GKTKLLNS------------SKYPKCLALVQ-----------G------KVYCGCQDGAIQEIDLATGTFATIQTGHRKL 977 (1094)
Q Consensus 927 g~i~l~~~------------~~~v~~l~~s~-----------~------~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~ 977 (1094)
.++++|-. ...|.|++|.+ + .+.+++.|++|++||+.+|.++ .++
T Consensus 257 qtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL------~tL 330 (406)
T KOG0295|consen 257 QTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCL------FTL 330 (406)
T ss_pred ceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEE------EEE
Confidence 99999963 34578888752 1 4889999999999999999998 678
Q ss_pred cCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEEC
Q 001349 978 LGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQ 1050 (1094)
Q Consensus 978 ~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~ 1050 (1094)
.+|.+.|..++|+|.|.|++++..|+ ++++||++++++..++. |...++++.|+.+ ++++|+-|.++++|..
T Consensus 331 ~ghdnwVr~~af~p~Gkyi~ScaDDk-tlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 331 VGHDNWVRGVAFSPGGKYILSCADDK-TLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ecccceeeeeEEcCCCeEEEEEecCC-cEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 89999999999999999999998775 99999999999999988 7888999999887 9999999999999964
No 41
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=1.5e-26 Score=252.02 Aligned_cols=277 Identities=17% Similarity=0.215 Sum_probs=231.9
Q ss_pred EEeCCcceeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeC
Q 001349 799 FWNHRELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSL 875 (1094)
Q Consensus 799 vWd~~~~~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~ 875 (1094)
.+-.+.....+.+|+..|+++.|.|. +|++|+.|+.|+||++-+.. .+++++.+|..+|.++.|+++|..+.|+|.
T Consensus 200 c~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~-~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sf 278 (503)
T KOG0282|consen 200 CYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR-RCLRTFKGHRKPVRDASFNNCGTSFLSASF 278 (503)
T ss_pred eeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc-ceehhhhcchhhhhhhhccccCCeeeeeec
Confidence 34444677889999999999999993 99999999999999998722 899999999999999999999999999999
Q ss_pred CCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCC-CeEEEEEeCCeEEEEcCC------------CCceEEE
Q 001349 876 DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQG-AGIKVHLRNGKTKLLNSS------------KYPKCLA 942 (1094)
Q Consensus 876 DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg-~~l~~~~~~g~i~l~~~~------------~~v~~l~ 942 (1094)
|++|++||+++| .+...+.....+.++. |.|++ +.++++..++.+..||.. +.|..+.
T Consensus 279 D~~lKlwDtETG--~~~~~f~~~~~~~cvk-------f~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~ 349 (503)
T KOG0282|consen 279 DRFLKLWDTETG--QVLSRFHLDKVPTCVK-------FHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDIT 349 (503)
T ss_pred ceeeeeeccccc--eEEEEEecCCCceeee-------cCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeE
Confidence 999999999999 5666666677788887 99998 788889999999999963 4688888
Q ss_pred EeC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeE---E
Q 001349 943 LVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNM---V 1017 (1094)
Q Consensus 943 ~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~---~ 1017 (1094)
|-+ .++++.+.|+++++|+.+.+..+... ...+.-...++..+|++.+++.-+.|+ .|.+|.+...-. .
T Consensus 350 F~~~g~rFissSDdks~riWe~~~~v~ik~i-----~~~~~hsmP~~~~~P~~~~~~aQs~dN-~i~ifs~~~~~r~nkk 423 (503)
T KOG0282|consen 350 FVDEGRRFISSSDDKSVRIWENRIPVPIKNI-----ADPEMHTMPCLTLHPNGKWFAAQSMDN-YIAIFSTVPPFRLNKK 423 (503)
T ss_pred EccCCceEeeeccCccEEEEEcCCCccchhh-----cchhhccCcceecCCCCCeehhhccCc-eEEEEecccccccCHh
Confidence 875 46999999999999999887665321 112223466888999999999999886 999998754221 2
Q ss_pred EEecC---CCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCC-CEEEEEeCCCcEEEE
Q 001349 1018 GSLPT---LSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNE-EFLVIGTSDGRIQAW 1091 (1094)
Q Consensus 1018 ~~~~~---~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg-~~L~sgs~DG~I~iW 1091 (1094)
..|.+ .+.-..+.|||| +|++|+.||.+.+||.++-+.+..++ .|.+.+..+.|+|.. ..++|++.||.|++|
T Consensus 424 K~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lk-ah~~~ci~v~wHP~e~Skvat~~w~G~Ikiw 502 (503)
T KOG0282|consen 424 KRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLK-AHDQPCIGVDWHPVEPSKVATCGWDGLIKIW 502 (503)
T ss_pred hhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccc-cCCcceEEEEecCCCcceeEecccCceeEec
Confidence 23332 355678999999 89999999999999999999999994 889999999999965 679999999999999
Q ss_pred e
Q 001349 1092 G 1092 (1094)
Q Consensus 1092 d 1092 (1094)
+
T Consensus 503 d 503 (503)
T KOG0282|consen 503 D 503 (503)
T ss_pred C
Confidence 7
No 42
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=1e-25 Score=266.24 Aligned_cols=263 Identities=26% Similarity=0.428 Sum_probs=224.8
Q ss_pred ccccccCcEEEEeeCCCCeEEEeCCc--ceee-cccCCCcEEEEEEe--CCEEEEEECCCeEEEEecCCCcceeEEEecc
Q 001349 779 SPLAFEMVKVLSNGHDSSADFWNHRE--LVHV-DSSENGKVLSIACF--RDKIFSGHSDGTIKVWTGRGSILHLIQQIRE 853 (1094)
Q Consensus 779 ~~~~~d~~~l~s~s~dg~I~vWd~~~--~~~~-~~~h~~~V~~l~fs--pd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~ 853 (1094)
...++.+.++++++.|++|++|+..+ .... +.||.+.|++++|. .+++++|+.|.+++|||..++ .|...+.+
T Consensus 212 ~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg--~C~~~l~g 289 (537)
T KOG0274|consen 212 LCLQLHDGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG--ECTHSLQG 289 (537)
T ss_pred hhheeecCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC--cEEEEecC
Confidence 34455688999999999999999873 3334 88999999999999 679999999999999999999 89999999
Q ss_pred cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecc-cCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEE
Q 001349 854 HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHD-IKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLL 932 (1094)
Q Consensus 854 H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~-~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~ 932 (1094)
|.+.|.++... +..+++||.|.+|++|++.++. ++.... |..+
T Consensus 290 h~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~--~l~l~~~h~~~-------------------------------- 333 (537)
T KOG0274|consen 290 HTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGA--CLNLLRGHTGP-------------------------------- 333 (537)
T ss_pred CCceEEEEEcc--CceEeeccCCceEEEEeccCcc--eEEEecccccc--------------------------------
Confidence 99999998874 5688899999999999999874 222221 4444
Q ss_pred cCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECC
Q 001349 933 NSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTS 1012 (1094)
Q Consensus 933 ~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~ 1012 (1094)
|+++....+.+++|+.||+|.+||+.+++++ ..+.+|...|+++.+.+. ..+.+|+.|+ +|++||+.
T Consensus 334 -----V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl------~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~-~IkvWdl~ 400 (537)
T KOG0274|consen 334 -----VNCVQLDEPLLVSGSYDGTVKVWDPRTGKCL------KSLSGHTGRVYSLIVDSE-NRLLSGSLDT-TIKVWDLR 400 (537)
T ss_pred -----EEEEEecCCEEEEEecCceEEEEEhhhceee------eeecCCcceEEEEEecCc-ceEEeeeecc-ceEeecCC
Confidence 4555555667999999999999999999998 678889999999988775 7888999995 99999999
Q ss_pred CC-eEEEEec-CCCCEEEEEEeCCEEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEE
Q 001349 1013 NY-NMVGSLP-TLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQA 1090 (1094)
Q Consensus 1013 ~~-~~~~~~~-~~~~v~~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~i 1090 (1094)
+. +++.++. |..-+..+.+...++++++.||+|++||..+++++.++...|.+.|+.+++. ...+++++.||++++
T Consensus 401 ~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l 478 (537)
T KOG0274|consen 401 TKRKCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKL 478 (537)
T ss_pred chhhhhhhhcCCcccccccccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEE
Confidence 99 8999998 5566777888888999999999999999999999999964377889999886 467899999999999
Q ss_pred EeCC
Q 001349 1091 WGLS 1094 (1094)
Q Consensus 1091 Wdls 1094 (1094)
||+.
T Consensus 479 ~dl~ 482 (537)
T KOG0274|consen 479 WDLR 482 (537)
T ss_pred Eecc
Confidence 9973
No 43
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=6.3e-27 Score=250.02 Aligned_cols=278 Identities=18% Similarity=0.248 Sum_probs=232.2
Q ss_pred HHHHHHhhhccccccccccCcEEEEeeCCCCeEEEeCC----cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEe
Q 001349 766 KDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR----ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWT 839 (1094)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~----~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd 839 (1094)
..++.+|..-.+.+-|-.+...|++|+.|..|++|+.. +...++.|..++|+++.|.++ ++++++.|+.+++|+
T Consensus 168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWN 247 (459)
T ss_pred hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeee
Confidence 34455565556666677777899999999999999986 366778888999999999886 899999999999999
Q ss_pred cCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCe
Q 001349 840 GRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAG 919 (1094)
Q Consensus 840 ~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~ 919 (1094)
+... ....++.+|++.|+++.|......+++|+.|.+|++||+... .|....-..+.+..+.
T Consensus 248 vd~~--r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~--~C~kt~l~~S~cnDI~-------------- 309 (459)
T KOG0288|consen 248 VDSL--RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKA--YCSKTVLPGSQCNDIV-------------- 309 (459)
T ss_pred ccch--hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhh--heeccccccccccceE--------------
Confidence 9998 788999999999999999987777999999999999999885 4443332222222222
Q ss_pred EEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEE
Q 001349 920 IKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTAST 999 (1094)
Q Consensus 920 l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~ 999 (1094)
..+..+++|..|+.|++||++++.... ....+ +.|+++..+.++.-+.++
T Consensus 310 -----------------------~~~~~~~SgH~DkkvRfwD~Rs~~~~~------sv~~g-g~vtSl~ls~~g~~lLss 359 (459)
T KOG0288|consen 310 -----------------------CSISDVISGHFDKKVRFWDIRSADKTR------SVPLG-GRVTSLDLSMDGLELLSS 359 (459)
T ss_pred -----------------------ecceeeeecccccceEEEeccCCceee------EeecC-cceeeEeeccCCeEEeee
Confidence 112247889999999999999998874 33333 489999999999999999
Q ss_pred ECCCCEEEEEECCCCeEEEEec-----CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCc-ceEEEE
Q 001349 1000 SLDGAAVKMWSTSNYNMVGSLP-----TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSG-KVQCMA 1071 (1094)
Q Consensus 1000 s~Dg~~I~iwd~~~~~~~~~~~-----~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~-~I~~l~ 1071 (1094)
+.|+ ++.+.|+++....+.+. .....+.+.|||+ |+++||.||.|+||++.++++...+...+.. .|++++
T Consensus 360 sRDd-tl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~ 438 (459)
T KOG0288|consen 360 SRDD-TLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLS 438 (459)
T ss_pred cCCC-ceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEE
Confidence 9997 99999999999888876 2456889999998 9999999999999999999999998755555 699999
Q ss_pred EcCCCCEEEEEeCCCcEEEEe
Q 001349 1072 LDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1072 ~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
|+|.|..|++++.++.+.+|.
T Consensus 439 W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 439 WNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred EcCCCchhhcccCCcceEecC
Confidence 999999999999999999994
No 44
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=1.3e-25 Score=254.74 Aligned_cols=278 Identities=22% Similarity=0.347 Sum_probs=231.0
Q ss_pred HHhhhccccccccccCcEEEEeeCCCCeEEEeCCcceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCccee
Q 001349 770 KGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHL 847 (1094)
Q Consensus 770 ~~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~ 847 (1094)
.+|+.-++...++.+...+++|+ .+.|++|+.++......-..+.+.+..|-|. ++++|...|.+.++|+... ..
T Consensus 370 ~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~--~l 446 (888)
T KOG0306|consen 370 GGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASA--SL 446 (888)
T ss_pred ccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehh--hh
Confidence 35566666667776666666654 4689999998555444445568999999984 9999999999999999988 67
Q ss_pred EEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC-----Cce-E-----EEEecccCccceeeeecCceEEEeeC
Q 001349 848 IQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGN-----EEI-H-----CVQVHDIKDQIQNLAVSNSILCFIPQ 916 (1094)
Q Consensus 848 ~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~-----~~~-~-----~~~~~~~~~~V~~v~~~~~~~~fspd 916 (1094)
+.+++.|.+.||+++.+||+..++|||.|.+|++||..- |.. + .....+..+.|.++. +|||
T Consensus 447 ~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~-------~Spd 519 (888)
T KOG0306|consen 447 VETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVS-------VSPD 519 (888)
T ss_pred hhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEE-------EcCC
Confidence 888899999999999999999999999999999999742 110 1 111222334444444 5666
Q ss_pred CCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEE
Q 001349 917 GAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYT 996 (1094)
Q Consensus 917 g~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~l 996 (1094)
|++ ++++--|.+|++|-+.+-+.. ..+.||.-||.|+..+||+..+
T Consensus 520 gk~----------------------------LaVsLLdnTVkVyflDtlKFf------lsLYGHkLPV~smDIS~DSkli 565 (888)
T KOG0306|consen 520 GKL----------------------------LAVSLLDNTVKVYFLDTLKFF------LSLYGHKLPVLSMDISPDSKLI 565 (888)
T ss_pred CcE----------------------------EEEEeccCeEEEEEecceeee------eeecccccceeEEeccCCcCeE
Confidence 654 666777888888888877765 6788999999999999999999
Q ss_pred EEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEc
Q 001349 997 ASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALD 1073 (1094)
Q Consensus 997 as~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~S 1073 (1094)
++||.| +.|++|-+.-|.|-+++- |.+.|.++.|-|+ .+++++.|+.|+-||-.....+..+ .+|...|++++.+
T Consensus 566 vTgSAD-KnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L-~~H~~ev~cLav~ 643 (888)
T KOG0306|consen 566 VTGSAD-KNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKL-DGHHSEVWCLAVS 643 (888)
T ss_pred EeccCC-CceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheee-ccchheeeeeEEc
Confidence 999999 599999999999988876 8899999999998 7999999999999999999999999 5899999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeC
Q 001349 1074 DNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1074 pdg~~L~sgs~DG~I~iWdl 1093 (1094)
|+|.+++++|.|.+|++|.-
T Consensus 644 ~~G~~vvs~shD~sIRlwE~ 663 (888)
T KOG0306|consen 644 PNGSFVVSSSHDKSIRLWER 663 (888)
T ss_pred CCCCeEEeccCCceeEeeec
Confidence 99999999999999999974
No 45
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=2.2e-26 Score=237.52 Aligned_cols=271 Identities=19% Similarity=0.264 Sum_probs=226.7
Q ss_pred cccccccccCcEEEEeeCCCCeEEEeCCcc----------eeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCC
Q 001349 776 RKYSPLAFEMVKVLSNGHDSSADFWNHREL----------VHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGS 843 (1094)
Q Consensus 776 ~~~~~~~~d~~~l~s~s~dg~I~vWd~~~~----------~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~ 843 (1094)
.....|++||.++++|+.||.|.|||+.+. ...+-.|..+|.|+.|+.| .+++|+.||.|+||.+.+|
T Consensus 216 ~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG 295 (508)
T KOG0275|consen 216 VECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETG 295 (508)
T ss_pred hhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecc
Confidence 345679999999999999999999998621 1223457899999999997 9999999999999999999
Q ss_pred cceeEEEec-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEE-ecccCccceeeeecCceEEEeeCCCeEE
Q 001349 844 ILHLIQQIR-EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQ-VHDIKDQIQNLAVSNSILCFIPQGAGIK 921 (1094)
Q Consensus 844 ~~~~~~~l~-~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~-~~~~~~~V~~v~~~~~~~~fspdg~~l~ 921 (1094)
.|++.|. .|+..|+++.||.|+..+.++|.|.++|+.-+.+|+ ++. ...|.+-|+... |.+||..
T Consensus 296 --~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK--~LKEfrGHsSyvn~a~-------ft~dG~~-- 362 (508)
T KOG0275|consen 296 --QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK--CLKEFRGHSSYVNEAT-------FTDDGHH-- 362 (508)
T ss_pred --hHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch--hHHHhcCccccccceE-------EcCCCCe--
Confidence 8999887 899999999999999999999999999999999985 222 234556666655 8888874
Q ss_pred EEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeC-CccEEEEEE
Q 001349 922 VHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN-GLVYTASTS 1000 (1094)
Q Consensus 922 ~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~-~~~~las~s 1000 (1094)
+++++.||+|++|+..++++..++.. .+...+|+++..-| +...++.+.
T Consensus 363 --------------------------iisaSsDgtvkvW~~KtteC~~Tfk~----~~~d~~vnsv~~~PKnpeh~iVCN 412 (508)
T KOG0275|consen 363 --------------------------IISASSDGTVKVWHGKTTECLSTFKP----LGTDYPVNSVILLPKNPEHFIVCN 412 (508)
T ss_pred --------------------------EEEecCCccEEEecCcchhhhhhccC----CCCcccceeEEEcCCCCceEEEEc
Confidence 88999999999999999999866543 24556788887754 344556665
Q ss_pred CCCCEEEEEECCCCeEEEEecC----CCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcC
Q 001349 1001 LDGAAVKMWSTSNYNMVGSLPT----LSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDD 1074 (1094)
Q Consensus 1001 ~Dg~~I~iwd~~~~~~~~~~~~----~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Sp 1074 (1094)
..+ +|.|.++ .|+.+++|.. ++...+.+.||. ++++.++|+.++.|.+.+|+.-.++ .-|...|..++-+|
T Consensus 413 rsn-tv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl-~VhEkdvIGl~HHP 489 (508)
T KOG0275|consen 413 RSN-TVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTL-PVHEKDVIGLTHHP 489 (508)
T ss_pred CCC-eEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeee-ecccccccccccCc
Confidence 554 9999998 5788888872 456777788887 8999999999999999999999988 57888999999999
Q ss_pred CCCEEEEEeCCCcEEEEe
Q 001349 1075 NEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1075 dg~~L~sgs~DG~I~iWd 1092 (1094)
..+.|++-+.||.+++|.
T Consensus 490 HqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 490 HQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ccchhhhhcccchhhhcC
Confidence 999999999999999995
No 46
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=6.6e-25 Score=260.27 Aligned_cols=245 Identities=24% Similarity=0.432 Sum_probs=208.3
Q ss_pred eeccc-CCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 001349 807 HVDSS-ENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWS 883 (1094)
Q Consensus 807 ~~~~~-h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWd 883 (1094)
..+.+ |...|.++.|+++ .+++++.|+.+++|+..+......+.+.+|...|.+++|+|||+++++++.|++|+|||
T Consensus 152 ~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd 231 (456)
T KOG0266|consen 152 QTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWD 231 (456)
T ss_pred eeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEee
Confidence 34434 4889999999997 99999999999999997762126777789999999999999999999999999999999
Q ss_pred CCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECC
Q 001349 884 IGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLA 963 (1094)
Q Consensus 884 i~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~ 963 (1094)
+............|...|++++ |+|+|+ .+++|+.|++|++||++
T Consensus 232 ~~~~~~~~~~l~gH~~~v~~~~-------f~p~g~----------------------------~i~Sgs~D~tvriWd~~ 276 (456)
T KOG0266|consen 232 LKDDGRNLKTLKGHSTYVTSVA-------FSPDGN----------------------------LLVSGSDDGTVRIWDVR 276 (456)
T ss_pred ccCCCeEEEEecCCCCceEEEE-------ecCCCC----------------------------EEEEecCCCcEEEEecc
Confidence 9444223333347788888887 888885 38899999999999999
Q ss_pred CCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCe--EEEEec-CCC--CEEEEEEeCC--EE
Q 001349 964 TGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN--MVGSLP-TLS--EVRAMVVSSE--LV 1036 (1094)
Q Consensus 964 ~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~--~~~~~~-~~~--~v~~l~~spd--~l 1036 (1094)
++++. ..+.+|...|++++|++++.++++++.|+ .|++||+.++. +...+. +.. .++.+.|+|+ ++
T Consensus 277 ~~~~~------~~l~~hs~~is~~~f~~d~~~l~s~s~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~l 349 (456)
T KOG0266|consen 277 TGECV------RKLKGHSDGISGLAFSPDGNLLVSASYDG-TIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYL 349 (456)
T ss_pred CCeEE------EeeeccCCceEEEEECCCCCEEEEcCCCc-cEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEE
Confidence 99888 77889999999999999999999999986 99999999998 556665 222 5899999998 89
Q ss_pred EEEEcCCeEEEEECCCCcEEEEecccCCc---ceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1037 YLGCKGGTVEIWDQKRQIRIETLQTGTSG---KVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1037 ~sgs~dg~I~vwd~~t~~~~~~l~~~h~~---~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
++++.|+.+++||+..+..+..+. +|.. .+.+..+++.+.++++|+.|+.|++||+.
T Consensus 350 l~~~~d~~~~~w~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~ 409 (456)
T KOG0266|consen 350 LSASLDRTLKLWDLRSGKSVGTYT-GHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSS 409 (456)
T ss_pred EEecCCCeEEEEEccCCcceeeec-ccCCcceeEecccccCCCCeEEEEeCCceEEEEeCC
Confidence 999999999999999999999984 6665 34555668899999999999999999974
No 47
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.94 E-value=1.9e-26 Score=245.90 Aligned_cols=235 Identities=21% Similarity=0.364 Sum_probs=204.2
Q ss_pred CCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceE
Q 001349 813 NGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIH 890 (1094)
Q Consensus 813 ~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~ 890 (1094)
...|..|.|.|+ .|++|+..|.+.+|+..+- .....++.|..+|.++.|+++|.+++||+.+|.|++|+.+.+..+
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f--nFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk 173 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF--NFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVK 173 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCcee--eHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhH
Confidence 468999999997 9999999999999998655 334456899999999999999999999999999999998875433
Q ss_pred EEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEE
Q 001349 891 CVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATI 970 (1094)
Q Consensus 891 ~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~ 970 (1094)
.+..+ +...|.+++ |+|+.. ++++++.||+|+|||....+..
T Consensus 174 ~~~ah-h~eaIRdla-------fSpnDs----------------------------kF~t~SdDg~ikiWdf~~~kee-- 215 (464)
T KOG0284|consen 174 IIQAH-HAEAIRDLA-------FSPNDS----------------------------KFLTCSDDGTIKIWDFRMPKEE-- 215 (464)
T ss_pred HhhHh-hhhhhheec-------cCCCCc----------------------------eeEEecCCCeEEEEeccCCchh--
Confidence 22222 235666666 665443 5899999999999999888765
Q ss_pred eccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEE
Q 001349 971 QTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEI 1047 (1094)
Q Consensus 971 ~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~v 1047 (1094)
..+.||.-.|.+++|||...++++++.|. .|++||.+++.++.++. |...|..+.|+++ +|+++|.|..+++
T Consensus 216 ----~vL~GHgwdVksvdWHP~kgLiasgskDn-lVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv 290 (464)
T KOG0284|consen 216 ----RVLRGHGWDVKSVDWHPTKGLIASGSKDN-LVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKV 290 (464)
T ss_pred ----heeccCCCCcceeccCCccceeEEccCCc-eeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEE
Confidence 56789999999999999999999999996 99999999999999998 7788999999998 9999999999999
Q ss_pred EECCCCcEEEEecccCCcceEEEEEcCCC-CEEEEEeCCCcEEEEeC
Q 001349 1048 WDQKRQIRIETLQTGTSGKVQCMALDDNE-EFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1048 wd~~t~~~~~~l~~~h~~~I~~l~~Spdg-~~L~sgs~DG~I~iWdl 1093 (1094)
||+++.+.+.++ .+|...|+++.|+|-. .+|.+|+.||.|..|.+
T Consensus 291 ~DiR~mkEl~~~-r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v 336 (464)
T KOG0284|consen 291 FDIRTMKELFTY-RGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVV 336 (464)
T ss_pred EehhHhHHHHHh-hcchhhheeeccccccccceeeccCCCceEEEec
Confidence 999998989999 5999999999999954 67889999999999976
No 48
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=3.3e-24 Score=217.00 Aligned_cols=281 Identities=14% Similarity=0.212 Sum_probs=231.4
Q ss_pred HHHHHHHHhhhccccccccccCcEEEEeeCCCCeEEEeCCc----ceeecccCCCcEEEEEEeC---CEEEEEECCCeEE
Q 001349 764 HMKDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRE----LVHVDSSENGKVLSIACFR---DKIFSGHSDGTIK 836 (1094)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~----~~~~~~~h~~~V~~l~fsp---d~LaSgs~Dg~I~ 836 (1094)
+...-.+.+..-.+...+..+|.++++|+.|+++.+|++.. ......+|++.|-.++|+| |.+++++.|.+|+
T Consensus 11 l~~r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir 90 (313)
T KOG1407|consen 11 LKRRELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIR 90 (313)
T ss_pred hhhHHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEE
Confidence 33355567777778889999999999999999999999873 3456778999999999987 5999999999999
Q ss_pred EEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeC
Q 001349 837 VWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQ 916 (1094)
Q Consensus 837 vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspd 916 (1094)
+||+..+ +++..+....+.+ -+.|+|+|.+++.++.|..|.+.|.++.+ .....+....+..+. |+-+
T Consensus 91 ~wd~r~~--k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~--~~~~~~~~~e~ne~~-------w~~~ 158 (313)
T KOG1407|consen 91 IWDIRSG--KCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYK--IVNEEQFKFEVNEIS-------WNNS 158 (313)
T ss_pred EEEeccC--cEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccc--eeehhcccceeeeee-------ecCC
Confidence 9999999 7887776554544 48899999999999999999999998853 333333333333433 3322
Q ss_pred CCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEE
Q 001349 917 GAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYT 996 (1094)
Q Consensus 917 g~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~l 996 (1094)
+. .++.....|+|.|.....-+++ ..+..|.....|+.|+|+|.++
T Consensus 159 nd----------------------------~Fflt~GlG~v~ILsypsLkpv------~si~AH~snCicI~f~p~Gryf 204 (313)
T KOG1407|consen 159 ND----------------------------LFFLTNGLGCVEILSYPSLKPV------QSIKAHPSNCICIEFDPDGRYF 204 (313)
T ss_pred CC----------------------------EEEEecCCceEEEEeccccccc------cccccCCcceEEEEECCCCceE
Confidence 22 3444555688888887766665 6778899999999999999999
Q ss_pred EEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEc
Q 001349 997 ASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALD 1073 (1094)
Q Consensus 997 as~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~S 1073 (1094)
++|+.|. .+.+||+...-+.+.+. +.-+|..+.||.| +|++||+|..|-|=++.+|..+..++ +.++...++|+
T Consensus 205 A~GsADA-lvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~--~~~~t~tVAWH 281 (313)
T KOG1407|consen 205 ATGSADA-LVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP--CEGPTFTVAWH 281 (313)
T ss_pred eeccccc-eeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee--ccCCceeEEec
Confidence 9999996 99999999999999998 7888999999988 89999999999999999999999995 88899999999
Q ss_pred CCCCEEEEEeCC---------CcEEEEeC
Q 001349 1074 DNEEFLVIGTSD---------GRIQAWGL 1093 (1094)
Q Consensus 1074 pdg~~L~sgs~D---------G~I~iWdl 1093 (1094)
|...+|+-+++| |+|++|.+
T Consensus 282 Pk~~LLAyA~ddk~~d~~reag~vKiFG~ 310 (313)
T KOG1407|consen 282 PKRPLLAYACDDKDGDSNREAGTVKIFGL 310 (313)
T ss_pred CCCceeeEEecCCCCccccccceeEEecC
Confidence 999999877654 67888865
No 49
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.94 E-value=7e-25 Score=226.13 Aligned_cols=246 Identities=19% Similarity=0.294 Sum_probs=199.9
Q ss_pred cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 001349 804 ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARV 881 (1094)
Q Consensus 804 ~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~v 881 (1094)
.+...+.+|++.|+.+.|+|+ +|+||+.|..|.+|++.... +-...+++|.++|..+.|.+|++.++++|.|++|+.
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc-eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC-ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRG 116 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc-cceeeeccccceeEeeeeccCCCEEEEecCCceEEE
Confidence 455677899999999999997 99999999999999976543 567788899999999999999999999999999999
Q ss_pred EECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEE
Q 001349 882 WSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEID 961 (1094)
Q Consensus 882 Wdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwD 961 (1094)
||+.+|+ .......+..-|+.+. .+.-|. -.+.+|+.||++++||
T Consensus 117 wD~~tG~-~~rk~k~h~~~vNs~~-------p~rrg~---------------------------~lv~SgsdD~t~kl~D 161 (338)
T KOG0265|consen 117 WDAETGK-RIRKHKGHTSFVNSLD-------PSRRGP---------------------------QLVCSGSDDGTLKLWD 161 (338)
T ss_pred Eecccce-eeehhccccceeeecC-------ccccCC---------------------------eEEEecCCCceEEEEe
Confidence 9999985 2222223333344332 111111 1378899999999999
Q ss_pred CCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEE
Q 001349 962 LATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYL 1038 (1094)
Q Consensus 962 l~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~s 1038 (1094)
+++...+..+. ....++++.|...+..+.+++.|+ .|++||++.+.....+. |.+.|+.+..+++ ++.+
T Consensus 162 ~R~k~~~~t~~-------~kyqltAv~f~d~s~qv~sggIdn-~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~lls 233 (338)
T KOG0265|consen 162 IRKKEAIKTFE-------NKYQLTAVGFKDTSDQVISGGIDN-DIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLS 233 (338)
T ss_pred ecccchhhccc-------cceeEEEEEecccccceeeccccC-ceeeeccccCcceEEeecccCceeeEEeccCCCcccc
Confidence 99888764433 235789999999999999999996 99999999999999988 7789999999998 8889
Q ss_pred EEcCCeEEEEECCC----CcEEEEecccCCc----ceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1039 GCKGGTVEIWDQKR----QIRIETLQTGTSG----KVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1039 gs~dg~I~vwd~~t----~~~~~~l~~~h~~----~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
-+.|+++++||++- ..++..+. +|.. ....++|||++..+.+|+.|..+++||.+
T Consensus 234 nsMd~tvrvwd~rp~~p~~R~v~if~-g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~ 296 (338)
T KOG0265|consen 234 NSMDNTVRVWDVRPFAPSQRCVKIFQ-GHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTT 296 (338)
T ss_pred ccccceEEEEEecccCCCCceEEEee-cchhhhhhhcceeeccCCCCccccccccceEEEeecc
Confidence 99999999999864 33466663 4432 45678999999999999999999999963
No 50
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=4.4e-24 Score=242.46 Aligned_cols=317 Identities=18% Similarity=0.266 Sum_probs=247.7
Q ss_pred HHhhhccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeC-C-EEEEEECCCeEEEEecCCCcc
Q 001349 770 KGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFR-D-KIFSGHSDGTIKVWTGRGSIL 845 (1094)
Q Consensus 770 ~~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fsp-d-~LaSgs~Dg~I~vWd~~t~~~ 845 (1094)
.+|+..+....+...|.++++||.|+.|.+||+- .....+.||++.|+..-|.. + ++++.+.|+.|++||+.+.
T Consensus 104 ngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tq-- 181 (888)
T KOG0306|consen 104 NGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQ-- 181 (888)
T ss_pred cccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccc--
Confidence 3466666666778889999999999999999986 57788899999999999988 3 9999999999999999999
Q ss_pred eeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC----------------------c--------------e
Q 001349 846 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNE----------------------E--------------I 889 (1094)
Q Consensus 846 ~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~----------------------~--------------~ 889 (1094)
.|..+.-.|.+.||++++.+ +.+++++.|+.+++|++... + +
T Consensus 182 hCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~ 259 (888)
T KOG0306|consen 182 HCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFL 259 (888)
T ss_pred eeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEE
Confidence 89999999999999999986 78999999999999998100 0 0
Q ss_pred EEE-----------------------------------------------------------------------------
Q 001349 890 HCV----------------------------------------------------------------------------- 892 (1094)
Q Consensus 890 ~~~----------------------------------------------------------------------------- 892 (1094)
.|.
T Consensus 260 ~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv 339 (888)
T KOG0306|consen 260 VCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLV 339 (888)
T ss_pred EEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEE
Confidence 000
Q ss_pred ----------------------------EecccCccceeeeecCc--------------------------------eEE
Q 001349 893 ----------------------------QVHDIKDQIQNLAVSNS--------------------------------ILC 912 (1094)
Q Consensus 893 ----------------------------~~~~~~~~V~~v~~~~~--------------------------------~~~ 912 (1094)
....|+..|.+++++.+ ...
T Consensus 340 ~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~ 419 (888)
T KOG0306|consen 340 LLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASK 419 (888)
T ss_pred EeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEE
Confidence 00001111112221111 234
Q ss_pred EeeCCCeEEEEEeCCeEEEEc------------CCCCceEEEEeCC--EEEEEEcCCeEEEEECCCC-----ceeEEe-c
Q 001349 913 FIPQGAGIKVHLRNGKTKLLN------------SSKYPKCLALVQG--KVYCGCQDGAIQEIDLATG-----TFATIQ-T 972 (1094)
Q Consensus 913 fspdg~~l~~~~~~g~i~l~~------------~~~~v~~l~~s~~--~l~sgs~Dg~I~iwDl~~~-----~~~~~~-~ 972 (1094)
|.|.+++++++..+|.+.+++ |.+.+.+++..++ .+++|+.|.+|++||..-- .....+ -
T Consensus 420 Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl 499 (888)
T KOG0306|consen 420 FVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSL 499 (888)
T ss_pred ecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeee
Confidence 556666666666667666665 3466778877653 4899999999999986421 110000 0
Q ss_pred cceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEE
Q 001349 973 GHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWD 1049 (1094)
Q Consensus 973 ~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd 1049 (1094)
.+.+...-...|.|+.++||+.+++.+-.|. +|++|-+.+.+..-++. |.-+|.+|.+||| .+++||.|..|+||-
T Consensus 500 ~~~rtLel~ddvL~v~~Spdgk~LaVsLLdn-TVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWG 578 (888)
T KOG0306|consen 500 KHTRTLELEDDVLCVSVSPDGKLLAVSLLDN-TVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWG 578 (888)
T ss_pred ccceEEeccccEEEEEEcCCCcEEEEEeccC-eEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEec
Confidence 0112233456899999999999999999996 99999999988877776 7889999999999 899999999999999
Q ss_pred CCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1050 QKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1050 ~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
++-|.+-+.+ .+|.+.|.++.|-|+...+.++|.||.|+-||
T Consensus 579 LdFGDCHKS~-fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWD 620 (888)
T KOG0306|consen 579 LDFGDCHKSF-FAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWD 620 (888)
T ss_pred cccchhhhhh-hcccCceeEEEEcccceeEEEecCcceEEeec
Confidence 9999999999 69999999999999999999999999999997
No 51
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.93 E-value=1.2e-23 Score=231.63 Aligned_cols=242 Identities=28% Similarity=0.474 Sum_probs=201.3
Q ss_pred eecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q 001349 807 HVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSI 884 (1094)
Q Consensus 807 ~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi 884 (1094)
..+.+|.++|++++|+|+ ++++++.||.|++||+.++ .....+..|...+..+.|+|+++++++++.||.|++||+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~ 80 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG--ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL 80 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCC--CcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEc
Confidence 456689999999999995 9999999999999999988 577788899999999999999999999999999999999
Q ss_pred CCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCC
Q 001349 885 GNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLAT 964 (1094)
Q Consensus 885 ~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~ 964 (1094)
.+++.. .....+...+.++. |++++. .+++++.||.|.+||+.+
T Consensus 81 ~~~~~~-~~~~~~~~~i~~~~-------~~~~~~----------------------------~~~~~~~~~~i~~~~~~~ 124 (289)
T cd00200 81 ETGECV-RTLTGHTSYVSSVA-------FSPDGR----------------------------ILSSSSRDKTIKVWDVET 124 (289)
T ss_pred Ccccce-EEEeccCCcEEEEE-------EcCCCC----------------------------EEEEecCCCeEEEEECCC
Confidence 885311 11112333444444 444433 355666699999999998
Q ss_pred CceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEc
Q 001349 965 GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCK 1041 (1094)
Q Consensus 965 ~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~ 1041 (1094)
++.. ..+..|...+.++.|++++.++++++.++ .|++||+++++....+. +...+.++.|+|+ .+++++.
T Consensus 125 ~~~~------~~~~~~~~~i~~~~~~~~~~~l~~~~~~~-~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 197 (289)
T cd00200 125 GKCL------TTLRGHTDWVNSVAFSPDGTFVASSSQDG-TIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS 197 (289)
T ss_pred cEEE------EEeccCCCcEEEEEEcCcCCEEEEEcCCC-cEEEEEccccccceeEecCccccceEEECCCcCEEEEecC
Confidence 7766 34557888999999999988888887675 99999999888888877 5568999999998 7888988
Q ss_pred CCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1042 GGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1042 dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
+|.|++||+.+++.+..+ ..|...|.+++|+|++.++++++.||.|++|++.
T Consensus 198 ~~~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~ 249 (289)
T cd00200 198 DGTIKLWDLSTGKCLGTL-RGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLR 249 (289)
T ss_pred CCcEEEEECCCCceecch-hhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcC
Confidence 999999999999888888 4788899999999999999988889999999973
No 52
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=9.2e-25 Score=243.13 Aligned_cols=241 Identities=19% Similarity=0.284 Sum_probs=208.0
Q ss_pred ecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 001349 808 VDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIG 885 (1094)
Q Consensus 808 ~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~ 885 (1094)
.+..|...|.++.|+|. .++++-..|.|.|||.++. ..++.+.-..-+|.+..|-+.-+++++|++|..||||+.+
T Consensus 8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetq--tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnyn 85 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQ--TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYN 85 (794)
T ss_pred HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccc--eeeeeeeecccchhhheeeeccceEEEecCCceEEEEecc
Confidence 44568999999999996 9999999999999999998 7889998888999999999999999999999999999999
Q ss_pred CCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCC
Q 001349 886 NEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATG 965 (1094)
Q Consensus 886 ~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~ 965 (1094)
+++ +......|.+-|.+++ .+|.. ..+++++.|-+|++||...+
T Consensus 86 t~e-kV~~FeAH~DyIR~ia-------vHPt~----------------------------P~vLtsSDDm~iKlW~we~~ 129 (794)
T KOG0276|consen 86 TGE-KVKTFEAHSDYIRSIA-------VHPTL----------------------------PYVLTSSDDMTIKLWDWENE 129 (794)
T ss_pred cce-eeEEeeccccceeeee-------ecCCC----------------------------CeEEecCCccEEEEeeccCc
Confidence 975 3333333444444444 23322 24889999999999998865
Q ss_pred ceeEEeccceeecCCCCCeEEEEEeC-CccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC----EEEEE
Q 001349 966 TFATIQTGHRKLLGKANPVHALQVHN-GLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE----LVYLG 1039 (1094)
Q Consensus 966 ~~~~~~~~~~~~~~h~~~V~sl~fs~-~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd----~l~sg 1039 (1094)
-... +++.||..-|.+++|+| |...+++++.|. +|++|.+.+..+..++. |...|+++.+-+. ++++|
T Consensus 130 wa~~-----qtfeGH~HyVMqv~fnPkD~ntFaS~sLDr-TVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsg 203 (794)
T KOG0276|consen 130 WACE-----QTFEGHEHYVMQVAFNPKDPNTFASASLDR-TVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISG 203 (794)
T ss_pred eeee-----eEEcCcceEEEEEEecCCCccceeeeeccc-cEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEec
Confidence 4332 68899999999999986 677889999995 99999999999999998 7889999999754 99999
Q ss_pred EcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1040 CKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1040 s~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
++|.+|+|||..+.++++++ .||...|+.+.|+|.-.+++|||.||+++||+-
T Consensus 204 aDD~tiKvWDyQtk~CV~TL-eGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs 256 (794)
T KOG0276|consen 204 ADDLTIKVWDYQTKSCVQTL-EGHTNNVSFVFFHPELPIIISGSEDGTVRIWNS 256 (794)
T ss_pred CCCceEEEeecchHHHHHHh-hcccccceEEEecCCCcEEEEecCCccEEEecC
Confidence 99999999999999999999 699999999999999999999999999999973
No 53
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=8.3e-24 Score=215.36 Aligned_cols=254 Identities=18% Similarity=0.270 Sum_probs=207.5
Q ss_pred ccccccc-CcEEEEeeCCCCeEEEeCCc-----ceee-cccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeE
Q 001349 778 YSPLAFE-MVKVLSNGHDSSADFWNHRE-----LVHV-DSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLI 848 (1094)
Q Consensus 778 ~~~~~~d-~~~l~s~s~dg~I~vWd~~~-----~~~~-~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~ 848 (1094)
..++.+- |..|+++|.|+.|++|+... +..+ -.+|+..|.+++|+|. +|++||.|.++.||.-..+.++++
T Consensus 19 ~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv 98 (312)
T KOG0645|consen 19 SVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECV 98 (312)
T ss_pred EEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEE
Confidence 3444443 66899999999999999872 3333 3479999999999995 999999999999999999999999
Q ss_pred EEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc-eEEEEec-ccCccceeeeecCceEEEeeCCCeEEEEEeC
Q 001349 849 QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE-IHCVQVH-DIKDQIQNLAVSNSILCFIPQGAGIKVHLRN 926 (1094)
Q Consensus 849 ~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~-~~~~~~~-~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~ 926 (1094)
.++.||.+.|.+++|+++|++|||+|+|+.|-||.+..+. ..+.... +|...|..+. |.|....+++.++|
T Consensus 99 ~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~-------WHPt~dlL~S~SYD 171 (312)
T KOG0645|consen 99 ATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVI-------WHPTEDLLFSCSYD 171 (312)
T ss_pred eeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEE-------EcCCcceeEEeccC
Confidence 9999999999999999999999999999999999998543 5555543 5677788877 89999999999999
Q ss_pred CeEEEEcC---------------CCCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEE
Q 001349 927 GKTKLLNS---------------SKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQV 989 (1094)
Q Consensus 927 g~i~l~~~---------------~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~f 989 (1094)
.++++|.. ...|.+++|++ .++++++.|++|++|-..+.-. .-|..+++.+.|
T Consensus 172 nTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~----------~~~sr~~Y~v~W 241 (312)
T KOG0645|consen 172 NTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS----------GMHSRALYDVPW 241 (312)
T ss_pred CeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc----------hhcccceEeeee
Confidence 99999863 34688999986 4799999999999998663321 236788999999
Q ss_pred eCCccEEEEEECCCCEEEEEECCCC------eEEEEe--cCCCCEEEEEEeCC---EEEEEEcCCeEEEEECC
Q 001349 990 HNGLVYTASTSLDGAAVKMWSTSNY------NMVGSL--PTLSEVRAMVVSSE---LVYLGCKGGTVEIWDQK 1051 (1094)
Q Consensus 990 s~~~~~las~s~Dg~~I~iwd~~~~------~~~~~~--~~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~ 1051 (1094)
. + -.+++++.|+ .|++|.-... +.+... .|...|+++.|.|. ++++|++||.|++|.+.
T Consensus 242 ~-~-~~IaS~ggD~-~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 242 D-N-GVIASGGGDD-AIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred c-c-cceEeccCCC-EEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 8 3 4568888886 8999976642 111211 26778999999994 89999999999999864
No 54
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.93 E-value=6.2e-25 Score=226.23 Aligned_cols=281 Identities=17% Similarity=0.223 Sum_probs=220.2
Q ss_pred HhhhccccccccccCcEEEEeeCCCCeEEEeCC--------------------cceeecccCCCcEEEEEEeCC--EEEE
Q 001349 771 GLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--------------------ELVHVDSSENGKVLSIACFRD--KIFS 828 (1094)
Q Consensus 771 ~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--------------------~~~~~~~~h~~~V~~l~fspd--~LaS 828 (1094)
.|+..-+...|++||..++||+.|..|+|.|+. ..+.++..|.+.|+++.|+|. .|++
T Consensus 110 ~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS 189 (430)
T KOG0640|consen 110 SHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILIS 189 (430)
T ss_pred ecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEe
Confidence 345556678899999999999999999999975 245667789999999999995 9999
Q ss_pred EECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecC
Q 001349 829 GHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSN 908 (1094)
Q Consensus 829 gs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~ 908 (1094)
|+.|++|+++|+.....+.-........+|.++.|+|.|.+|+.|....++++||+++-+ |+...
T Consensus 190 ~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Q--cfvsa------------- 254 (430)
T KOG0640|consen 190 GSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQ--CFVSA------------- 254 (430)
T ss_pred ccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEecccee--Eeeec-------------
Confidence 999999999999765222222222346789999999999999999999999999999853 22111
Q ss_pred ceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCC-CCeE
Q 001349 909 SILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKA-NPVH 985 (1094)
Q Consensus 909 ~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~-~~V~ 985 (1094)
.|+.+ |.+.|+++.+++ ...++|+.||.|++||-.+++++..+. ..|. ..|.
T Consensus 255 -----nPd~q---------------ht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~-----~AH~gsevc 309 (430)
T KOG0640|consen 255 -----NPDDQ---------------HTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIG-----NAHGGSEVC 309 (430)
T ss_pred -----Ccccc---------------cccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHH-----hhcCCceee
Confidence 12211 234455555543 237899999999999999998885433 2344 5799
Q ss_pred EEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCCC------EEEEEEeC--CEEEEEE-cCCeEEEEECCCCcEE
Q 001349 986 ALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSE------VRAMVVSS--ELVYLGC-KGGTVEIWDQKRQIRI 1056 (1094)
Q Consensus 986 sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~------v~~l~~sp--d~l~sgs-~dg~I~vwd~~t~~~~ 1056 (1094)
+..|..++.|+.+.+.|. .+++|.+.+++++..+.+.+. -+...|+. |+++.-. ..+.+.-||.+++..+
T Consensus 310 Sa~Ftkn~kyiLsSG~DS-~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~ 388 (430)
T KOG0640|consen 310 SAVFTKNGKYILSSGKDS-TVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRV 388 (430)
T ss_pred eEEEccCCeEEeecCCcc-eeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhh
Confidence 999999999999999985 999999999999998874311 22333443 3655544 4578999999999888
Q ss_pred EEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1057 ETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1057 ~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
..+..||.+.+..+.-||.+..++||+.|-.+++|-
T Consensus 389 ~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 389 ALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred hhcccCCCCCceEEEeCCCCCceeeecccceeeeee
Confidence 888789999999999999999999999999999994
No 55
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.7e-24 Score=218.18 Aligned_cols=275 Identities=16% Similarity=0.210 Sum_probs=211.0
Q ss_pred hccccccccccCcEEEEeeC-----CCCeEEEeCC--cceeecc--cCCCcEEEEEEeCC---EEEEEECCCeEEEEecC
Q 001349 774 ELRKYSPLAFEMVKVLSNGH-----DSSADFWNHR--ELVHVDS--SENGKVLSIACFRD---KIFSGHSDGTIKVWTGR 841 (1094)
Q Consensus 774 ~~~~~~~~~~d~~~l~s~s~-----dg~I~vWd~~--~~~~~~~--~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~ 841 (1094)
.-.+++|+-..--.++++.. .|++.|-+.. ..+.... .-.+.+..++|+++ .+++++.||++++||..
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 34456666554445555432 4677777774 2232222 24688999999984 99999999999999965
Q ss_pred CCcceeEEEecccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeE
Q 001349 842 GSILHLIQQIREHTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGI 920 (1094)
Q Consensus 842 t~~~~~~~~l~~H~~~V~sv~fsp-dg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l 920 (1094)
.. ..++..+++|...|.++.|++ ++..++++|.|+|||+|+...++ .......+...|.... |+|..
T Consensus 92 ~~-s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~-Sv~Tf~gh~~~Iy~a~-------~sp~~--- 159 (311)
T KOG0277|consen 92 MP-SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN-SVQTFNGHNSCIYQAA-------FSPHI--- 159 (311)
T ss_pred CC-CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc-ceEeecCCccEEEEEe-------cCCCC---
Confidence 43 368999999999999999998 67788899999999999998764 1122233455555554 44433
Q ss_pred EEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEe-CCccEEEEE
Q 001349 921 KVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVH-NGLVYTAST 999 (1094)
Q Consensus 921 ~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs-~~~~~las~ 999 (1094)
++.+++++.||++++||++..... ..+..|...|.+..|+ -+...++++
T Consensus 160 ------------------------~nlfas~Sgd~~l~lwdvr~~gk~------~~i~ah~~Eil~cdw~ky~~~vl~Tg 209 (311)
T KOG0277|consen 160 ------------------------PNLFASASGDGTLRLWDVRSPGKF------MSIEAHNSEILCCDWSKYNHNVLATG 209 (311)
T ss_pred ------------------------CCeEEEccCCceEEEEEecCCCce------eEEEeccceeEeecccccCCcEEEec
Confidence 346899999999999999865333 3467788899999997 467788888
Q ss_pred ECCCCEEEEEECCCC-eEEEEec-CCCCEEEEEEeCC---EEEEEEcCCeEEEEECCCCc-EEEEecccCCcceEEEEEc
Q 001349 1000 SLDGAAVKMWSTSNY-NMVGSLP-TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQI-RIETLQTGTSGKVQCMALD 1073 (1094)
Q Consensus 1000 s~Dg~~I~iwd~~~~-~~~~~~~-~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~~-~~~~l~~~h~~~I~~l~~S 1073 (1094)
+.|+ .|+.||+++. .++..+. |+-.|..+.|||. .+++++.|-+++|||...+. .+.+. ..|...|..+.||
T Consensus 210 ~vd~-~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~-~~HtEFv~g~Dws 287 (311)
T KOG0277|consen 210 GVDN-LVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETV-DHHTEFVCGLDWS 287 (311)
T ss_pred CCCc-eEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhh-hccceEEeccccc
Confidence 8886 9999999974 4556665 7788999999997 79999999999999998654 44444 5799999999999
Q ss_pred C-CCCEEEEEeCCCcEEEEe
Q 001349 1074 D-NEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1074 p-dg~~L~sgs~DG~I~iWd 1092 (1094)
+ +..++++++.|+.++||+
T Consensus 288 ~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 288 LFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred cccCceeeecccccceeeec
Confidence 8 557899999999999997
No 56
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.92 E-value=3e-24 Score=227.52 Aligned_cols=243 Identities=21% Similarity=0.329 Sum_probs=193.6
Q ss_pred ccCCCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecC---CCEEEEEeCCCcEEEEECCC
Q 001349 810 SSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS---GEMLYSGSLDKTARVWSIGN 886 (1094)
Q Consensus 810 ~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspd---g~~LaSgs~DgtI~vWdi~~ 886 (1094)
..|.+.|.++.-.++.|+||++||++++||..+. ...++.||+++|.+++|.-. ...++++|.|.++++|.++.
T Consensus 102 ~~hdDWVSsv~~~~~~IltgsYDg~~riWd~~Gk---~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 102 FLHDDWVSSVKGASKWILTGSYDGTSRIWDLKGK---SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred ccchhhhhhhcccCceEEEeecCCeeEEEecCCc---eEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 3589999999999899999999999999999875 88899999999999888643 33699999999999999988
Q ss_pred CceEEE---EecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECC
Q 001349 887 EEIHCV---QVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLA 963 (1094)
Q Consensus 887 ~~~~~~---~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~ 963 (1094)
+..... ....|+..|.++. ..++|.. +++|+.|.+|.+|+..
T Consensus 179 ~~~~~~~~~~~~GHk~~V~sVs-------v~~sgtr----------------------------~~SgS~D~~lkiWs~~ 223 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKRSVDSVS-------VDSSGTR----------------------------FCSGSWDTMLKIWSVE 223 (423)
T ss_pred chhhhhHHhHhcccccceeEEE-------ecCCCCe----------------------------EEeecccceeeecccC
Confidence 762211 1125677777776 6666665 5555556666666521
Q ss_pred CCc-------------------eeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCC
Q 001349 964 TGT-------------------FATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLS 1024 (1094)
Q Consensus 964 ~~~-------------------~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~ 1024 (1094)
+.. ......+...+.||..+|.++.|++ ...+.+++.|- +|+.||+.++..+.++..+.
T Consensus 224 ~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDH-TIk~WDletg~~~~~~~~~k 301 (423)
T KOG0313|consen 224 TDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDH-TIKVWDLETGGLKSTLTTNK 301 (423)
T ss_pred CCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccc-eEEEEEeecccceeeeecCc
Confidence 100 0001112246789999999999988 55678888885 99999999999999999999
Q ss_pred CEEEEEEeCC--EEEEEEcCCeEEEEECCCCc---EEEEecccCCcceEEEEEcCCCC-EEEEEeCCCcEEEEeC
Q 001349 1025 EVRAMVVSSE--LVYLGCKGGTVEIWDQKRQI---RIETLQTGTSGKVQCMALDDNEE-FLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1025 ~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~---~~~~l~~~h~~~I~~l~~Spdg~-~L~sgs~DG~I~iWdl 1093 (1094)
.+.++..+|. ++++|+.|..|++||.+++. ...+| .||.+.|.++.|+|... .|++|+.||++++||+
T Consensus 302 sl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~-~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDv 375 (423)
T KOG0313|consen 302 SLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSL-IGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDV 375 (423)
T ss_pred ceeEeecccccceeeecCCCCceeecCCCCCCCceeEEee-ecchhhhhheecCCCCceEEEEEecCCeEEEEEe
Confidence 9999999997 89999999999999998753 44556 69999999999999774 5789999999999997
No 57
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.92 E-value=1.8e-23 Score=224.72 Aligned_cols=265 Identities=23% Similarity=0.346 Sum_probs=224.0
Q ss_pred CcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEE
Q 001349 785 MVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTG 860 (1094)
Q Consensus 785 ~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~s 860 (1094)
...+++|+.|..+.++|.. +.+.++.||...|+.+.|+|+ .+++++.|-.|+||..... ........|..+|+.
T Consensus 231 ~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~--s~~~~~~~h~~~V~~ 308 (506)
T KOG0289|consen 231 SSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS--SEPTSSRPHEEPVTG 308 (506)
T ss_pred CCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc--cCcccccccccccee
Confidence 3688999999999999987 678899999999999999996 8999999999999999887 566677889999999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecc-cCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCce
Q 001349 861 LAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHD-IKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPK 939 (1094)
Q Consensus 861 v~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~-~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~ 939 (1094)
+..+|+|.||++++.||+..+.|+++|...+....+ ..-.+.+.. |+|||-.
T Consensus 309 ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~-------fHpDgLi-------------------- 361 (506)
T KOG0289|consen 309 LSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA-------FHPDGLI-------------------- 361 (506)
T ss_pred eeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee-------EcCCceE--------------------
Confidence 999999999999999999999999998644333332 122344444 8888763
Q ss_pred EEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEE
Q 001349 940 CLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGS 1019 (1094)
Q Consensus 940 ~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~ 1019 (1094)
+.+|..||.|++||+.++... ..|.+|+++|..++|+.+|.|++++..|+ .|++||++.-+...+
T Consensus 362 --------fgtgt~d~~vkiwdlks~~~~------a~Fpght~~vk~i~FsENGY~Lat~add~-~V~lwDLRKl~n~kt 426 (506)
T KOG0289|consen 362 --------FGTGTPDGVVKIWDLKSQTNV------AKFPGHTGPVKAISFSENGYWLATAADDG-SVKLWDLRKLKNFKT 426 (506)
T ss_pred --------EeccCCCceEEEEEcCCcccc------ccCCCCCCceeEEEeccCceEEEEEecCC-eEEEEEehhhcccce
Confidence 778999999999999998866 67889999999999999999999999887 799999998887777
Q ss_pred ecC--CCCEEEEEEeCC--EEEEEEcCCeEEEEECC--CCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1020 LPT--LSEVRAMVVSSE--LVYLGCKGGTVEIWDQK--RQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1020 ~~~--~~~v~~l~~spd--~l~sgs~dg~I~vwd~~--t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
+.. ...+.++.|+.. ++++++.|=.|++++.. +...+..+ ..|.+..+++.|..+.++++++|.|..++++.+
T Consensus 427 ~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~-~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 427 IQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKEL-ADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehh-hhcccccceeeecccceEEeeccchhheEEeec
Confidence 773 346888888776 88888777667776643 56677777 578889999999999999999999999999876
Q ss_pred C
Q 001349 1094 S 1094 (1094)
Q Consensus 1094 s 1094 (1094)
+
T Consensus 506 ~ 506 (506)
T KOG0289|consen 506 T 506 (506)
T ss_pred C
Confidence 4
No 58
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.2e-23 Score=239.56 Aligned_cols=258 Identities=20% Similarity=0.305 Sum_probs=213.7
Q ss_pred EeeCCCCeEEEeCCc--ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecc-cCCCeEEEEEe
Q 001349 790 SNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIRE-HTKAVTGLAIL 864 (1094)
Q Consensus 790 s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~-H~~~V~sv~fs 864 (1094)
.-+....|.+|+... .......+...|+++.|+++ +|++|..+|.|.|||..+. +.+..+.+ |...|.+++|.
T Consensus 192 aValg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~--k~~~~~~~~h~~rvg~laW~ 269 (484)
T KOG0305|consen 192 AVALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ--KKTRTLRGSHASRVGSLAWN 269 (484)
T ss_pred EEEecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhc--cccccccCCcCceeEEEecc
Confidence 334556789999873 23333344899999999986 9999999999999999988 77888888 99999999997
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEe
Q 001349 865 QSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALV 944 (1094)
Q Consensus 865 pdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s 944 (1094)
+..+.+|+.||.|.++|++..+........|...|..+. |++|+.
T Consensus 270 --~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLk-------ws~d~~-------------------------- 314 (484)
T KOG0305|consen 270 --SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLK-------WSPDGN-------------------------- 314 (484)
T ss_pred --CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeE-------ECCCCC--------------------------
Confidence 678999999999999999987522222445667777776 777776
Q ss_pred CCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCC--ccEEEEEECCCCEEEEEECCCCeEEEEecC
Q 001349 945 QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG--LVYTASTSLDGAAVKMWSTSNYNMVGSLPT 1022 (1094)
Q Consensus 945 ~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~--~~~las~s~Dg~~I~iwd~~~~~~~~~~~~ 1022 (1094)
++++|+.|+.+.+||.....+. ..+..|...|..++|+|- +.+...|+..+++|++||+.++..+..+..
T Consensus 315 --~lASGgnDN~~~Iwd~~~~~p~------~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt 386 (484)
T KOG0305|consen 315 --QLASGGNDNVVFIWDGLSPEPK------FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT 386 (484)
T ss_pred --eeccCCCccceEeccCCCcccc------EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc
Confidence 4899999999999999666655 678889999999999873 333333333346999999999999999999
Q ss_pred CCCEEEEEEeCCE--EEE--EEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1023 LSEVRAMVVSSEL--VYL--GCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1023 ~~~v~~l~~spd~--l~s--gs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
++.|.++.|++.+ +++ |..++.|.||+..+.+.+..+ .+|..+|..+++||||..+++|+.|.++++|++
T Consensus 387 gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l-~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 387 GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAEL-LGHTSRVLYLALSPDGETIVTGAADETLRFWNL 460 (484)
T ss_pred CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeee-cCCcceeEEEEECCCCCEEEEecccCcEEeccc
Confidence 9999999999983 444 456789999999999999999 699999999999999999999999999999986
No 59
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2e-23 Score=240.05 Aligned_cols=276 Identities=16% Similarity=0.206 Sum_probs=218.3
Q ss_pred HHHHHHhhhccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecC
Q 001349 766 KDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGR 841 (1094)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~ 841 (1094)
-+.+..|...++...|.+....+++||.|-.|+||+++ .++.++.||-+-|..+.|++. +|+|+|.|.||+||+..
T Consensus 44 i~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwq 123 (1202)
T KOG0292|consen 44 IDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQ 123 (1202)
T ss_pred HhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEecc
Confidence 34455566677788888889999999999999999998 678889999999999999997 99999999999999999
Q ss_pred CCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEE
Q 001349 842 GSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIK 921 (1094)
Q Consensus 842 t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~ 921 (1094)
++ +++..+.||...|.|..|+|....++|+|-|.||||||+..-..+........+...... +..-.
T Consensus 124 sr--~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~-----------~~~dL 190 (1202)
T KOG0292|consen 124 SR--KCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQ-----------GNSDL 190 (1202)
T ss_pred CC--ceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccc-----------cchhh
Confidence 99 899999999999999999999999999999999999999763211111111111111100 00001
Q ss_pred EEEeCCeEE--EEcCCCCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEE
Q 001349 922 VHLRNGKTK--LLNSSKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTA 997 (1094)
Q Consensus 922 ~~~~~g~i~--l~~~~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~la 997 (1094)
.+..|-.++ +-.|...|+-.+|+| ..|++|+.|..|++|.+...+.... .+..||.++|+++-|||...++.
T Consensus 191 fg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEv----DtcrgH~nnVssvlfhp~q~lIl 266 (1202)
T KOG0292|consen 191 FGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEV----DTCRGHYNNVSSVLFHPHQDLIL 266 (1202)
T ss_pred cCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceee----hhhhcccCCcceEEecCccceeE
Confidence 111222232 234788899999998 5699999999999999876554322 46789999999999999999999
Q ss_pred EEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC-EEEEEEcCCeEEEEECCCCcEEEEe
Q 001349 998 STSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETL 1059 (1094)
Q Consensus 998 s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~~~~~l 1059 (1094)
+.+.|+ +|++||+...+.+++|. .++..+.++.+|. -+++++.|+-+.||.+..-.+...+
T Consensus 267 SnsEDk-sirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErpa~~v 329 (1202)
T KOG0292|consen 267 SNSEDK-SIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERPAYAV 329 (1202)
T ss_pred ecCCCc-cEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCceEEE
Confidence 999985 99999999999999998 5788999999999 5777788888888887754444433
No 60
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.1e-23 Score=209.88 Aligned_cols=242 Identities=17% Similarity=0.287 Sum_probs=198.5
Q ss_pred ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 001349 805 LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVW 882 (1094)
Q Consensus 805 ~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vW 882 (1094)
...++..|.++|.++.|+.+ +.++++.|.+|++|+...+ .+++++.+|...|..++.+.|+..+++|+.|+.|.+|
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg--~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG--ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVW 86 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccc--ceeeeecCCCceeeeccccccccccccCCCCceEEEE
Confidence 34567789999999999975 9999999999999999999 8999999999999999999999999999999999999
Q ss_pred ECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEEC
Q 001349 883 SIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDL 962 (1094)
Q Consensus 883 di~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl 962 (1094)
|+.+|+. ......|...|+.+. |..+.. .+++|+.|.++++||.
T Consensus 87 DV~TGkv-~Rr~rgH~aqVNtV~-------fNeesS----------------------------Vv~SgsfD~s~r~wDC 130 (307)
T KOG0316|consen 87 DVNTGKV-DRRFRGHLAQVNTVR-------FNEESS----------------------------VVASGSFDSSVRLWDC 130 (307)
T ss_pred EcccCee-eeecccccceeeEEE-------ecCcce----------------------------EEEeccccceeEEEEc
Confidence 9999962 222334455566655 433333 3889999999999999
Q ss_pred CCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEE
Q 001349 963 ATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGC 1040 (1094)
Q Consensus 963 ~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs 1040 (1094)
++.....+ +.+......|.++..... .+++|+.|| +++.||++.|+....+ -+.+|+++.|++| ...+++
T Consensus 131 RS~s~ePi----Qildea~D~V~Si~v~~h--eIvaGS~DG-tvRtydiR~G~l~sDy-~g~pit~vs~s~d~nc~La~~ 202 (307)
T KOG0316|consen 131 RSRSFEPI----QILDEAKDGVSSIDVAEH--EIVAGSVDG-TVRTYDIRKGTLSSDY-FGHPITSVSFSKDGNCSLASS 202 (307)
T ss_pred ccCCCCcc----chhhhhcCceeEEEeccc--EEEeeccCC-cEEEEEeecceeehhh-cCCcceeEEecCCCCEEEEee
Confidence 98765432 344445577888887644 567888897 9999999998764332 4678999999998 788999
Q ss_pred cCCeEEEEECCCCcEEEEecccCCcc--eEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1041 KGGTVEIWDQKRQIRIETLQTGTSGK--VQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1041 ~dg~I~vwd~~t~~~~~~l~~~h~~~--I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
-|+++++.|..+|+.+..++ ||... =...+++.....+++|++||.|++||+
T Consensus 203 l~stlrLlDk~tGklL~sYk-Ghkn~eykldc~l~qsdthV~sgSEDG~Vy~wdL 256 (307)
T KOG0316|consen 203 LDSTLRLLDKETGKLLKSYK-GHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDL 256 (307)
T ss_pred ccceeeecccchhHHHHHhc-ccccceeeeeeeecccceeEEeccCCceEEEEEe
Confidence 99999999999999999994 88763 345567777789999999999999997
No 61
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.3e-23 Score=229.59 Aligned_cols=249 Identities=20% Similarity=0.293 Sum_probs=204.9
Q ss_pred CCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEec-CCCE
Q 001349 795 SSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQ-SGEM 869 (1094)
Q Consensus 795 g~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fsp-dg~~ 869 (1094)
-.+.+|+.. .....+......|.++.|-.| +++.|+..|.|+|+|..+. ..++.+.+|+.+|..+.|+| ++..
T Consensus 48 ~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r--~iLR~~~ah~apv~~~~f~~~d~t~ 125 (487)
T KOG0310|consen 48 VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR--VILRQLYAHQAPVHVTKFSPQDNTM 125 (487)
T ss_pred cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccH--HHHHHHhhccCceeEEEecccCCeE
Confidence 367888876 345556677899999999976 9999999999999997776 67888999999999999999 5778
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEE
Q 001349 870 LYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVY 949 (1094)
Q Consensus 870 LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~ 949 (1094)
+++|++|+.+++||+.+... ......|.+.|.+.+ |+|.... .++
T Consensus 126 l~s~sDd~v~k~~d~s~a~v-~~~l~~htDYVR~g~-------~~~~~~h---------------------------ivv 170 (487)
T KOG0310|consen 126 LVSGSDDKVVKYWDLSTAYV-QAELSGHTDYVRCGD-------ISPANDH---------------------------IVV 170 (487)
T ss_pred EEecCCCceEEEEEcCCcEE-EEEecCCcceeEeec-------cccCCCe---------------------------EEE
Confidence 89999999999999999642 333444445555444 3333222 489
Q ss_pred EEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCC-CeEEEEec-CCCCEE
Q 001349 950 CGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSN-YNMVGSLP-TLSEVR 1027 (1094)
Q Consensus 950 sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~-~~~~~~~~-~~~~v~ 1027 (1094)
+|+.||.|++||++..... ..-..|..+|.++.+-|.+..+++++ |..|++||+.+ ++.+..+. |+..|+
T Consensus 171 tGsYDg~vrl~DtR~~~~~------v~elnhg~pVe~vl~lpsgs~iasAg--Gn~vkVWDl~~G~qll~~~~~H~KtVT 242 (487)
T KOG0310|consen 171 TGSYDGKVRLWDTRSLTSR------VVELNHGCPVESVLALPSGSLIASAG--GNSVKVWDLTTGGQLLTSMFNHNKTVT 242 (487)
T ss_pred ecCCCceEEEEEeccCCce------eEEecCCCceeeEEEcCCCCEEEEcC--CCeEEEEEecCCceehhhhhcccceEE
Confidence 9999999999999987422 23346889999999999999999987 56899999985 45555555 999999
Q ss_pred EEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEE
Q 001349 1028 AMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQA 1090 (1094)
Q Consensus 1028 ~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~i 1090 (1094)
|+.+..+ .+++|+-|+.|+|||+.+.+.+..+. ..++|.+++.+||++.++.|..||.+.+
T Consensus 243 cL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~--~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 243 CLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK--YPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred EEEeecCCceEeecccccceEEEEccceEEEEeee--cccceeeEEecCCCceEEEecccceeee
Confidence 9999986 89999999999999999999999884 7789999999999999999999998765
No 62
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.92 E-value=2e-23 Score=248.12 Aligned_cols=281 Identities=13% Similarity=0.164 Sum_probs=225.9
Q ss_pred cccccccCcEEEEee--CCCCeEEEeCCc--------------ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEe
Q 001349 778 YSPLAFEMVKVLSNG--HDSSADFWNHRE--------------LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWT 839 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s--~dg~I~vWd~~~--------------~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd 839 (1094)
...+.+|+.+++||| .||.++||+... .+.....|.+.|+|+.|++| +||+|+.|+.|.||+
T Consensus 18 SIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~ 97 (942)
T KOG0973|consen 18 SIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWE 97 (942)
T ss_pred EEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEee
Confidence 466788999999999 999999998752 23345679999999999998 999999999999998
Q ss_pred cCC----------C------cceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCcccee
Q 001349 840 GRG----------S------ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQN 903 (1094)
Q Consensus 840 ~~t----------~------~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~ 903 (1094)
... | .++++..+.+|.+.|..+.|+|++.+|+++|.|++|.|||..+.+ .......|.+.|..
T Consensus 98 ~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~-~~~vl~~H~s~VKG 176 (942)
T KOG0973|consen 98 RAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFE-LLKVLRGHQSLVKG 176 (942)
T ss_pred ecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccce-eeeeeecccccccc
Confidence 772 1 356888999999999999999999999999999999999999873 33344456777887
Q ss_pred eeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCC
Q 001349 904 LAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANP 983 (1094)
Q Consensus 904 v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~ 983 (1094)
+. |.|-|++ +++-+.|++|++|++.+-........+..-..-..-
T Consensus 177 vs-------~DP~Gky----------------------------~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~ 221 (942)
T KOG0973|consen 177 VS-------WDPIGKY----------------------------FASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTF 221 (942)
T ss_pred eE-------ECCccCe----------------------------eeeecCCceEEEEEcccceeeEeeccchhhCCCcce
Confidence 77 8888876 667778888888886654444333322221223345
Q ss_pred eEEEEEeCCccEEEEEEC---CCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC-------------------EEEEEE
Q 001349 984 VHALQVHNGLVYTASTSL---DGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE-------------------LVYLGC 1040 (1094)
Q Consensus 984 V~sl~fs~~~~~las~s~---Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd-------------------~l~sgs 1040 (1094)
+..+.|+|||.++++... .+.++.|.+-.+++.-..+- |..++.++.|+|. .+++|+
T Consensus 222 f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgS 301 (942)
T KOG0973|consen 222 FLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGS 301 (942)
T ss_pred eeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEec
Confidence 788999999999998632 12489999988888766666 7889999999862 467899
Q ss_pred cCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1041 KGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1041 ~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
.|++|.||.....+++.....-....|.+++|+|||-.|+++|.||+|.++.++
T Consensus 302 qDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fe 355 (942)
T KOG0973|consen 302 QDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFE 355 (942)
T ss_pred CCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcc
Confidence 999999999999888887755556689999999999999999999999998763
No 63
>PTZ00420 coronin; Provisional
Probab=99.92 E-value=1.1e-22 Score=241.22 Aligned_cols=242 Identities=14% Similarity=0.160 Sum_probs=182.8
Q ss_pred eeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcc------eeEEEecccCCCeE
Q 001349 791 NGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSIL------HLIQQIREHTKAVT 859 (1094)
Q Consensus 791 ~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~------~~~~~l~~H~~~V~ 859 (1094)
|+.++.|++|+.. .....+.+|.+.|.+++|+|+ +|+||+.||+|+|||+.++.. .++..+.+|.+.|+
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 6678999999976 455678899999999999983 999999999999999976421 23456789999999
Q ss_pred EEEEecCCCE-EEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCc
Q 001349 860 GLAILQSGEM-LYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYP 938 (1094)
Q Consensus 860 sv~fspdg~~-LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v 938 (1094)
+++|+|++.. +++++.||+|+|||+.+++... ...+...|.++. |+|+|..
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~--~i~~~~~V~Sls-------wspdG~l------------------- 181 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAF--QINMPKKLSSLK-------WNIKGNL------------------- 181 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEE--EEecCCcEEEEE-------ECCCCCE-------------------
Confidence 9999998875 5799999999999999875322 222345666666 7777764
Q ss_pred eEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEE-----EEeCCccEEEEEECCC---CEEEEEE
Q 001349 939 KCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHAL-----QVHNGLVYTASTSLDG---AAVKMWS 1010 (1094)
Q Consensus 939 ~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl-----~fs~~~~~las~s~Dg---~~I~iwd 1010 (1094)
+++++.|+.|++||++++..+ ..+.+|.+.+.+. .|++++.++++++.|+ ++|+|||
T Consensus 182 ---------Lat~s~D~~IrIwD~Rsg~~i------~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWD 246 (568)
T PTZ00420 182 ---------LSGTCVGKHMHIIDPRKQEIA------SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWD 246 (568)
T ss_pred ---------EEEEecCCEEEEEECCCCcEE------EEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEE
Confidence 777889999999999999877 4556777654433 3457888888887764 4799999
Q ss_pred CCC-CeEEEEecCCCCEEE--EEEeCC---EEEEEEcCCeEEEEECCCCcEEEEec-ccCCcceEEEEEcCCC
Q 001349 1011 TSN-YNMVGSLPTLSEVRA--MVVSSE---LVYLGCKGGTVEIWDQKRQIRIETLQ-TGTSGKVQCMALDDNE 1076 (1094)
Q Consensus 1011 ~~~-~~~~~~~~~~~~v~~--l~~spd---~l~sgs~dg~I~vwd~~t~~~~~~l~-~~h~~~I~~l~~Spdg 1076 (1094)
+++ +.++..+.+...... ..+.++ ++++|+.|++|++|++..+.. ..+. ..+..++.+++|.|+.
T Consensus 247 lr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 247 LKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred CCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcE-EeecccccCCCccceEEcccc
Confidence 995 566766654333222 234443 788999999999999987753 3332 2355688999999965
No 64
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.92 E-value=9.6e-23 Score=259.44 Aligned_cols=254 Identities=12% Similarity=0.212 Sum_probs=198.8
Q ss_pred CCCeEEEeCCcce-------eecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCc------ceeEEEecccCCCe
Q 001349 794 DSSADFWNHRELV-------HVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI------LHLIQQIREHTKAV 858 (1094)
Q Consensus 794 dg~I~vWd~~~~~-------~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~------~~~~~~l~~H~~~V 858 (1094)
+|.+++|+..... ..+..|.+.|++++|+|+ ++++|+.||+|+|||..+.. ......+. +...|
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 5667778776321 123458999999999996 99999999999999975420 01223333 45679
Q ss_pred EEEEEec-CCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEee-CCCeEEEEEeCCeEEEEcCCC
Q 001349 859 TGLAILQ-SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIP-QGAGIKVHLRNGKTKLLNSSK 936 (1094)
Q Consensus 859 ~sv~fsp-dg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fsp-dg~~l~~~~~~g~i~l~~~~~ 936 (1094)
.+++|++ ++.+|++++.||+|++||+.+++. ......|...|.++. |+| ++.
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~-~~~~~~H~~~V~~l~-------~~p~~~~------------------ 589 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQL-VTEMKEHEKRVWSID-------YSSADPT------------------ 589 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeE-EEEecCCCCCEEEEE-------EcCCCCC------------------
Confidence 9999987 578999999999999999988642 222334556666666 554 333
Q ss_pred CceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEe-CCccEEEEEECCCCEEEEEECCCCe
Q 001349 937 YPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVH-NGLVYTASTSLDGAAVKMWSTSNYN 1015 (1094)
Q Consensus 937 ~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs-~~~~~las~s~Dg~~I~iwd~~~~~ 1015 (1094)
.+++|+.||+|++||++++..... +..+ ..|.++.|+ +++.++++++.|| .|++||++++.
T Consensus 590 ----------~L~Sgs~Dg~v~iWd~~~~~~~~~------~~~~-~~v~~v~~~~~~g~~latgs~dg-~I~iwD~~~~~ 651 (793)
T PLN00181 590 ----------LLASGSDDGSVKLWSINQGVSIGT------IKTK-ANICCVQFPSESGRSLAFGSADH-KVYYYDLRNPK 651 (793)
T ss_pred ----------EEEEEcCCCEEEEEECCCCcEEEE------EecC-CCeEEEEEeCCCCCEEEEEeCCC-eEEEEECCCCC
Confidence 488999999999999999887643 3333 578999995 6789999999997 99999998765
Q ss_pred -EEEEec-CCCCEEEEEEeCC-EEEEEEcCCeEEEEECCC------CcEEEEecccCCcceEEEEEcCCCCEEEEEeCCC
Q 001349 1016 -MVGSLP-TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKR------QIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDG 1086 (1094)
Q Consensus 1016 -~~~~~~-~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t------~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG 1086 (1094)
.+..+. |...|.++.|.+. ++++++.|++|++||+.. ..++..+ .+|...++.++|+|++.+|++|+.||
T Consensus 652 ~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~-~gh~~~i~~v~~s~~~~~lasgs~D~ 730 (793)
T PLN00181 652 LPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSF-MGHTNVKNFVGLSVSDGYIATGSETN 730 (793)
T ss_pred ccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEE-cCCCCCeeEEEEcCCCCEEEEEeCCC
Confidence 455555 7788999999754 899999999999999974 3567788 58999999999999999999999999
Q ss_pred cEEEEeC
Q 001349 1087 RIQAWGL 1093 (1094)
Q Consensus 1087 ~I~iWdl 1093 (1094)
+|++|+.
T Consensus 731 ~v~iw~~ 737 (793)
T PLN00181 731 EVFVYHK 737 (793)
T ss_pred EEEEEEC
Confidence 9999985
No 65
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.92 E-value=9.3e-24 Score=230.72 Aligned_cols=284 Identities=15% Similarity=0.234 Sum_probs=211.5
Q ss_pred HhhhccccccccccCcEEEEeeCCCCeEEEeCCc-------ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecC
Q 001349 771 GLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRE-------LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGR 841 (1094)
Q Consensus 771 ~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~-------~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~ 841 (1094)
.+.+++....+.+.|.+|++||.|.+|++||+.. ........+..|.++.|++. .|++.+....++|+|-.
T Consensus 165 hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRd 244 (641)
T KOG0772|consen 165 HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRD 244 (641)
T ss_pred CCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccC
Confidence 3445566677778899999999999999999872 22233345678999999984 77777777889999977
Q ss_pred CCcce----------eEEEecccCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCc--eEEEEecccCccceeeeecC
Q 001349 842 GSILH----------LIQQIREHTKAVTGLAILQS-GEMLYSGSLDKTARVWSIGNEE--IHCVQVHDIKDQIQNLAVSN 908 (1094)
Q Consensus 842 t~~~~----------~~~~l~~H~~~V~sv~fspd-g~~LaSgs~DgtI~vWdi~~~~--~~~~~~~~~~~~V~~v~~~~ 908 (1094)
+..+. -+..-+||...+++.+|+|+ ...++|++.||++||||++..+ ...+...... ...+.+
T Consensus 245 G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~----g~Rv~~ 320 (641)
T KOG0772|consen 245 GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAG----GKRVPV 320 (641)
T ss_pred CceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCC----CcccCc
Confidence 65210 01122689999999999995 5689999999999999998754 2222222111 111122
Q ss_pred ceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCC--CeEE
Q 001349 909 SILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKAN--PVHA 986 (1094)
Q Consensus 909 ~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~--~V~s 986 (1094)
..++|++||+. |++|+.||+|++||..+......+ ..-..|.. .|+|
T Consensus 321 tsC~~nrdg~~----------------------------iAagc~DGSIQ~W~~~~~~v~p~~---~vk~AH~~g~~Its 369 (641)
T KOG0772|consen 321 TSCAWNRDGKL----------------------------IAAGCLDGSIQIWDKGSRTVRPVM---KVKDAHLPGQDITS 369 (641)
T ss_pred eeeecCCCcch----------------------------hhhcccCCceeeeecCCcccccce---EeeeccCCCCceeE
Confidence 23347777774 788999999999998554332111 23346765 8999
Q ss_pred EEEeCCccEEEEEECCCCEEEEEECCCCe-EEEEec---CCCCEEEEEEeCC--EEEEEEc------CCeEEEEECCCCc
Q 001349 987 LQVHNGLVYTASTSLDGAAVKMWSTSNYN-MVGSLP---TLSEVRAMVVSSE--LVYLGCK------GGTVEIWDQKRQI 1054 (1094)
Q Consensus 987 l~fs~~~~~las~s~Dg~~I~iwd~~~~~-~~~~~~---~~~~v~~l~~spd--~l~sgs~------dg~I~vwd~~t~~ 1054 (1094)
+.|+.++.++++-+.|+ ++++||++..+ ++.... ....-+.++|||+ ++++|+. .|++.+||..+..
T Consensus 370 i~FS~dg~~LlSRg~D~-tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d 448 (641)
T KOG0772|consen 370 ISFSYDGNYLLSRGFDD-TLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD 448 (641)
T ss_pred EEeccccchhhhccCCC-ceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee
Confidence 99999999999999997 99999999754 444443 3456678999999 7777753 5789999999999
Q ss_pred EEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEE
Q 001349 1055 RIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAW 1091 (1094)
Q Consensus 1055 ~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iW 1091 (1094)
.+..+. -....|..+.|+|.-+.|+.|+.||++++|
T Consensus 449 ~v~ki~-i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 449 TVYKID-ISTASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred eEEEec-CCCceEEEEeecchhhheeeecCCCceEEE
Confidence 999884 446689999999999999999999999986
No 66
>PTZ00421 coronin; Provisional
Probab=99.92 E-value=1.6e-22 Score=239.06 Aligned_cols=255 Identities=16% Similarity=0.219 Sum_probs=187.7
Q ss_pred cccccCcEEEEeeCCCCeEEEeCCc---------------ceeecccCCCcEEEEEEeC-C--EEEEEECCCeEEEEecC
Q 001349 780 PLAFEMVKVLSNGHDSSADFWNHRE---------------LVHVDSSENGKVLSIACFR-D--KIFSGHSDGTIKVWTGR 841 (1094)
Q Consensus 780 ~~~~d~~~l~s~s~dg~I~vWd~~~---------------~~~~~~~h~~~V~~l~fsp-d--~LaSgs~Dg~I~vWd~~ 841 (1094)
....|+..+++++.+.....|+... ....+.+|.+.|++++|+| + +|++|+.||+|++||+.
T Consensus 27 ~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~ 106 (493)
T PTZ00421 27 TALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIP 106 (493)
T ss_pred cccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecC
Confidence 3444555556666666555665321 1124678999999999998 4 89999999999999997
Q ss_pred CCcc-----eeEEEecccCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEee
Q 001349 842 GSIL-----HLIQQIREHTKAVTGLAILQSG-EMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIP 915 (1094)
Q Consensus 842 t~~~-----~~~~~l~~H~~~V~sv~fspdg-~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fsp 915 (1094)
++.. .++..+.+|...|.+++|+|++ ++|++|+.|++|+|||+.+++.. .....+...|.++. |+|
T Consensus 107 ~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~-~~l~~h~~~V~sla-------~sp 178 (493)
T PTZ00421 107 EEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAV-EVIKCHSDQITSLE-------WNL 178 (493)
T ss_pred CCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEE-EEEcCCCCceEEEE-------EEC
Confidence 6521 3567889999999999999975 79999999999999999987522 22234566677776 777
Q ss_pred CCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCC-eEEEEEeCCcc
Q 001349 916 QGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANP-VHALQVHNGLV 994 (1094)
Q Consensus 916 dg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~-V~sl~fs~~~~ 994 (1094)
+|.. +++|+.|+.|++||+++++.+ ..+.+|... +..+.|.+++.
T Consensus 179 dG~l----------------------------Latgs~Dg~IrIwD~rsg~~v------~tl~~H~~~~~~~~~w~~~~~ 224 (493)
T PTZ00421 179 DGSL----------------------------LCTTSKDKKLNIIDPRDGTIV------SSVEAHASAKSQRCLWAKRKD 224 (493)
T ss_pred CCCE----------------------------EEEecCCCEEEEEECCCCcEE------EEEecCCCCcceEEEEcCCCC
Confidence 7763 889999999999999999876 345566654 34667777766
Q ss_pred EEEEEEC---CCCEEEEEECCCCe-EEEEec--CCCCEEEEEEeCC--EEEEEE-cCCeEEEEECCCCcEEEEecccCCc
Q 001349 995 YTASTSL---DGAAVKMWSTSNYN-MVGSLP--TLSEVRAMVVSSE--LVYLGC-KGGTVEIWDQKRQIRIETLQTGTSG 1065 (1094)
Q Consensus 995 ~las~s~---Dg~~I~iwd~~~~~-~~~~~~--~~~~v~~l~~spd--~l~sgs-~dg~I~vwd~~t~~~~~~l~~~h~~ 1065 (1094)
.+++++. .++.|++||+++.. +..... ....+....|+++ ++++|+ .||.|++||+.+++.+......+..
T Consensus 225 ~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~ 304 (493)
T PTZ00421 225 LIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVE 304 (493)
T ss_pred eEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCC
Confidence 6666542 12599999998754 343333 2345556677777 677776 5999999999999988777555666
Q ss_pred ceEEEEEcCCC
Q 001349 1066 KVQCMALDDNE 1076 (1094)
Q Consensus 1066 ~I~~l~~Spdg 1076 (1094)
++.+++|.|.-
T Consensus 305 ~~~g~~~~pk~ 315 (493)
T PTZ00421 305 PHKGLCMMPKW 315 (493)
T ss_pred CCcceEecccc
Confidence 78889888843
No 67
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.91 E-value=1.5e-22 Score=214.02 Aligned_cols=270 Identities=14% Similarity=0.209 Sum_probs=217.5
Q ss_pred ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 001349 805 LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVW 882 (1094)
Q Consensus 805 ~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vW 882 (1094)
-...+..|++.|.+++.+|+ +++||+.|..-.+|++.++ .....+.+|.+.|+++.|+.||.+||||+.+|.|+||
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~g--e~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTG--EFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVF 133 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCC--cceeEecCCCCceEEEEEccCceEEEecCCCccEEEE
Confidence 35678899999999999996 9999999999999999999 6888999999999999999999999999999999999
Q ss_pred ECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCC------------CceEEEEeC--CEE
Q 001349 883 SIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSK------------YPKCLALVQ--GKV 948 (1094)
Q Consensus 883 di~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~------------~v~~l~~s~--~~l 948 (1094)
+..++..+.... ..+..+. .+.|+|-+..++.++.||.+-.|.... .+++=.|.| .++
T Consensus 134 ~~stg~~~~~~~----~e~~die----Wl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~ 205 (399)
T KOG0296|consen 134 KVSTGGEQWKLD----QEVEDIE----WLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRI 205 (399)
T ss_pred EcccCceEEEee----cccCceE----EEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceE
Confidence 999986444332 2233333 234899999999999999999998654 233333333 459
Q ss_pred EEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecC------
Q 001349 949 YCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT------ 1022 (1094)
Q Consensus 949 ~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~------ 1022 (1094)
++|..||+|++||+.++.+....... .....+++.++..+..+..|+.++ .+++-+..+|+.+.....
T Consensus 206 ~tgy~dgti~~Wn~ktg~p~~~~~~~-----e~~~~~~~~~~~~~~~~~~g~~e~-~~~~~~~~sgKVv~~~n~~~~~l~ 279 (399)
T KOG0296|consen 206 LTGYDDGTIIVWNPKTGQPLHKITQA-----EGLELPCISLNLAGSTLTKGNSEG-VACGVNNGSGKVVNCNNGTVPELK 279 (399)
T ss_pred EEEecCceEEEEecCCCceeEEeccc-----ccCcCCccccccccceeEeccCCc-cEEEEccccceEEEecCCCCcccc
Confidence 99999999999999999988554322 134567788888888888888886 788888878777665542
Q ss_pred ---CCC---EEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1023 ---LSE---VRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1023 ---~~~---v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
... |.++.++.. +.++|+-||+|.|||....++.+.+ .|...|+.+.|-+ ..+|++++.||+|+.||.
T Consensus 280 ~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c--~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDa 355 (399)
T KOG0296|consen 280 PSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC--EHEDGVTKLKWLN-TDYLLTACANGKVRQWDA 355 (399)
T ss_pred ccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheec--cCCCceEEEEEcC-cchheeeccCceEEeeec
Confidence 222 444455555 7889999999999999998877776 4888999999988 789999999999999984
No 68
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=4.4e-24 Score=224.71 Aligned_cols=261 Identities=15% Similarity=0.217 Sum_probs=205.5
Q ss_pred ecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q 001349 808 VDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSI 884 (1094)
Q Consensus 808 ~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi 884 (1094)
.+.||.+.|.|++=+|+ .++||+.||.|++||+.+. .++.+++.|.+.|..+++.. ..++++|+|++|+.|.+
T Consensus 61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR--~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR--ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred hccccccccchhhcCcchhhhhhccccCceEEEEehhhh--hhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence 45789999999999996 7999999999999999998 79999999999999999976 67889999999999998
Q ss_pred CCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC------------CCCceEEEEeC---CEEE
Q 001349 885 GNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS------------SKYPKCLALVQ---GKVY 949 (1094)
Q Consensus 885 ~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~------------~~~v~~l~~s~---~~l~ 949 (1094)
+.. .......+..+..+........|...|.. +.+|+. ...+.++.|++ +.|+
T Consensus 137 ~~~---p~~tilg~s~~~gIdh~~~~~~FaTcGe~---------i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILa 204 (433)
T KOG0268|consen 137 DGP---PLHTILGKSVYLGIDHHRKNSVFATCGEQ---------IDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILA 204 (433)
T ss_pred cCC---cceeeeccccccccccccccccccccCce---------eeecccccCCccceeecCCCceeEEecCCCcchhee
Confidence 873 22333334444444433333335555544 445553 24578888886 3488
Q ss_pred EEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCe-EEEEec-CCCCEE
Q 001349 950 CGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN-MVGSLP-TLSEVR 1027 (1094)
Q Consensus 950 sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~-~~~~~~-~~~~v~ 1027 (1094)
++..|++|.+||++++.++.... -...-+.++|+|+...+++++.|- .+..||++... ++..+. |.+.|.
T Consensus 205 s~~sDrsIvLyD~R~~~Pl~KVi-------~~mRTN~IswnPeafnF~~a~ED~-nlY~~DmR~l~~p~~v~~dhvsAV~ 276 (433)
T KOG0268|consen 205 SCASDRSIVLYDLRQASPLKKVI-------LTMRTNTICWNPEAFNFVAANEDH-NLYTYDMRNLSRPLNVHKDHVSAVM 276 (433)
T ss_pred eeccCCceEEEecccCCccceee-------eeccccceecCccccceeeccccc-cceehhhhhhcccchhhcccceeEE
Confidence 88899999999999998874211 123457899999888888888774 99999998643 444444 778999
Q ss_pred EEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1028 AMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1028 ~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
.++|||. -+++||.|.+|+||..+.+..-..+.......|.++.||.|.+++++||+|+.|++|.
T Consensus 277 dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 277 DVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWK 343 (433)
T ss_pred EeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeee
Confidence 9999998 6999999999999999988765555333344799999999999999999999999996
No 69
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=3.8e-23 Score=240.33 Aligned_cols=241 Identities=17% Similarity=0.289 Sum_probs=193.1
Q ss_pred ecc-cCCCcEEEEEEeCC--EEEEEECCCeEEEEecCC--------------------------------C---------
Q 001349 808 VDS-SENGKVLSIACFRD--KIFSGHSDGTIKVWTGRG--------------------------------S--------- 843 (1094)
Q Consensus 808 ~~~-~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t--------------------------------~--------- 843 (1094)
... .|.+.|+++.||+| +||+|+.||.|+||.+.. .
T Consensus 261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence 344 78999999999987 999999999999997654 0
Q ss_pred -----------------cceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeee
Q 001349 844 -----------------ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAV 906 (1094)
Q Consensus 844 -----------------~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~ 906 (1094)
..+++..+.||.+.|..+.||.+ ++|+|+|.|+|||+|++... .|+..+.|.+-|++++
T Consensus 341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~--~CL~~F~HndfVTcVa- 416 (712)
T KOG0283|consen 341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRK--ECLKVFSHNDFVTCVA- 416 (712)
T ss_pred cccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCc--ceeeEEecCCeeEEEE-
Confidence 01345566899999999999964 68999999999999999875 5666665566666655
Q ss_pred cCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEE
Q 001349 907 SNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHA 986 (1094)
Q Consensus 907 ~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~s 986 (1094)
|.|-.. +++++|+-||.|++|++...+...... -..-|++
T Consensus 417 ------FnPvDD---------------------------ryFiSGSLD~KvRiWsI~d~~Vv~W~D-------l~~lITA 456 (712)
T KOG0283|consen 417 ------FNPVDD---------------------------RYFISGSLDGKVRLWSISDKKVVDWND-------LRDLITA 456 (712)
T ss_pred ------ecccCC---------------------------CcEeecccccceEEeecCcCeeEeehh-------hhhhhee
Confidence 444332 469999999999999999887764322 2267999
Q ss_pred EEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec---C------CCCEEEEEEeCC---EEEEEEcCCeEEEEECCCCc
Q 001349 987 LQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP---T------LSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQI 1054 (1094)
Q Consensus 987 l~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~---~------~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~~ 1054 (1094)
++|.|+|.+.+.|+.+| .+++|++...+....+. + +..|+++.|.|. .+++.+.|..|||||..+..
T Consensus 457 vcy~PdGk~avIGt~~G-~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~ 535 (712)
T KOG0283|consen 457 VCYSPDGKGAVIGTFNG-YCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKD 535 (712)
T ss_pred EEeccCCceEEEEEecc-EEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchh
Confidence 99999999999999997 99999999887766553 1 347999999864 68899999999999998888
Q ss_pred EEEEecccCCc-ceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1055 RIETLQTGTSG-KVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1055 ~~~~l~~~h~~-~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
++..|+..+.. .-....|+.||++|+++++|..|+||++
T Consensus 536 lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 536 LVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred hhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeC
Confidence 88888633332 3456789999999999999999999986
No 70
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.91 E-value=6.6e-23 Score=242.43 Aligned_cols=232 Identities=28% Similarity=0.473 Sum_probs=202.7
Q ss_pred cCCCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEE-ecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCce
Q 001349 811 SENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQ-IREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEI 889 (1094)
Q Consensus 811 ~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~-l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~ 889 (1094)
.|...+.+..|.++++++++.|++|++||..++ ..+.. +.||.+.|++++|..-+.++++|+.|.++++||..+|+.
T Consensus 206 ~~~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~--~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C 283 (537)
T KOG0274|consen 206 TDDHVVLCLQLHDGFFKSGSDDSTLHLWDLNNG--YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC 283 (537)
T ss_pred cCcchhhhheeecCeEEecCCCceeEEeecccc--eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE
Confidence 367788999999889999999999999999998 66666 999999999999987789999999999999999999852
Q ss_pred EEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeE
Q 001349 890 HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFAT 969 (1094)
Q Consensus 890 ~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~ 969 (1094)
.... +.|...+.++...+..+++|+.|.+|++|++.++..+
T Consensus 284 --~~~l------------------------------------~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l- 324 (537)
T KOG0274|consen 284 --THSL------------------------------------QGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACL- 324 (537)
T ss_pred --EEEe------------------------------------cCCCceEEEEEccCceEeeccCCceEEEEeccCcceE-
Confidence 2221 1233445566666667888999999999999999998
Q ss_pred EeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeC-CEEEEEEcCCeEEE
Q 001349 970 IQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSS-ELVYLGCKGGTVEI 1047 (1094)
Q Consensus 970 ~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~sp-d~l~sgs~dg~I~v 1047 (1094)
..+.+|..+|+++..+ +.++++++.|+ +|++||+.+++++.++. |...|.++.+.+ +.+++|+.|++|++
T Consensus 325 -----~l~~~h~~~V~~v~~~--~~~lvsgs~d~-~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~Ikv 396 (537)
T KOG0274|consen 325 -----NLLRGHTGPVNCVQLD--EPLLVSGSYDG-TVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKV 396 (537)
T ss_pred -----EEeccccccEEEEEec--CCEEEEEecCc-eEEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEe
Confidence 5566799999999988 77889999997 99999999999999999 789999999999 89999999999999
Q ss_pred EECCCC-cEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1048 WDQKRQ-IRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1048 wd~~t~-~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
||+.++ +++.++ .+|.+.+.++.+ .+++|++++.||+|++||.+
T Consensus 397 Wdl~~~~~c~~tl-~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~ 441 (537)
T KOG0274|consen 397 WDLRTKRKCIHTL-QGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAE 441 (537)
T ss_pred ecCCchhhhhhhh-cCCccccccccc--ccceeEeccccccEEEeecc
Confidence 999999 999999 589988877766 47899999999999999964
No 71
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=2.1e-22 Score=209.04 Aligned_cols=259 Identities=17% Similarity=0.262 Sum_probs=208.8
Q ss_pred EEEEeeCCCCeEEEeCC-c-------------ceeecccCCCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEec
Q 001349 787 KVLSNGHDSSADFWNHR-E-------------LVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIR 852 (1094)
Q Consensus 787 ~l~s~s~dg~I~vWd~~-~-------------~~~~~~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~ 852 (1094)
.|+.|++...|.-++.. + ....+..|.+.|++++.+.-++|||+.|-+|+|||+.+. ..+..+-
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~--~qlg~ll 80 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKR--KQLGILL 80 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEecceeEeccCCCCcEEEEeccch--hhhccee
Confidence 46677777766555443 1 134456799999999999999999999999999999998 7888889
Q ss_pred ccCCCeEEEEEecCCC--EEEEEeCCCcEEEEECCCCceEEEE-ecccCccceeeeecCceEEEeeCCCeEEEEEeCCeE
Q 001349 853 EHTKAVTGLAILQSGE--MLYSGSLDKTARVWSIGNEEIHCVQ-VHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKT 929 (1094)
Q Consensus 853 ~H~~~V~sv~fspdg~--~LaSgs~DgtI~vWdi~~~~~~~~~-~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i 929 (1094)
.|.+.|+++.|.++-. .|++|+.||.|.+|+...- .++. ...|...|+.++ +.|.|+.
T Consensus 81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W--~~~~slK~H~~~Vt~ls-------iHPS~KL---------- 141 (362)
T KOG0294|consen 81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW--ELLKSLKAHKGQVTDLS-------IHPSGKL---------- 141 (362)
T ss_pred ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe--EEeeeecccccccceeE-------ecCCCce----------
Confidence 9999999999998654 8999999999999999874 3332 234566687777 6777763
Q ss_pred EEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEE
Q 001349 930 KLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMW 1009 (1094)
Q Consensus 930 ~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iw 1009 (1094)
.++.+.|+.++.||+.+|+.-.... .. ...+.+.|+|.|.+++..+.+ .|-+|
T Consensus 142 ------------------ALsVg~D~~lr~WNLV~Gr~a~v~~-----L~--~~at~v~w~~~Gd~F~v~~~~--~i~i~ 194 (362)
T KOG0294|consen 142 ------------------ALSVGGDQVLRTWNLVRGRVAFVLN-----LK--NKATLVSWSPQGDHFVVSGRN--KIDIY 194 (362)
T ss_pred ------------------EEEEcCCceeeeehhhcCccceeec-----cC--CcceeeEEcCCCCEEEEEecc--EEEEE
Confidence 4567889999999999998654322 11 233459999999987777766 69999
Q ss_pred ECCCCeEEEEecCCCCEEEEEEeCC-EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEE--cCCCCEEEEEeCCC
Q 001349 1010 STSNYNMVGSLPTLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMAL--DDNEEFLVIGTSDG 1086 (1094)
Q Consensus 1010 d~~~~~~~~~~~~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~--Spdg~~L~sgs~DG 1086 (1094)
.+.+-.....+.....+.++.|-.. .+++|.+|+.|.+||..+..+...+ .+|..+|-++.+ .|++.+|+|+|+||
T Consensus 195 q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~-~AH~~RVK~i~~~~~~~~~~lvTaSSDG 273 (362)
T KOG0294|consen 195 QLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEF-LAHENRVKDIASYTNPEHEYLVTASSDG 273 (362)
T ss_pred ecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceee-ecchhheeeeEEEecCCceEEEEeccCc
Confidence 9988777777766677777777655 9999999999999999999988888 599999999985 56789999999999
Q ss_pred cEEEEeCC
Q 001349 1087 RIQAWGLS 1094 (1094)
Q Consensus 1087 ~I~iWdls 1094 (1094)
.|+|||+.
T Consensus 274 ~I~vWd~~ 281 (362)
T KOG0294|consen 274 FIKVWDID 281 (362)
T ss_pred eEEEEEcc
Confidence 99999973
No 72
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.91 E-value=7.4e-24 Score=231.03 Aligned_cols=264 Identities=16% Similarity=0.197 Sum_probs=215.5
Q ss_pred HHhhhccccccccc-cCcEEEEeeCCCCeEEEeCC---cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCC
Q 001349 770 KGLRELRKYSPLAF-EMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGS 843 (1094)
Q Consensus 770 ~~~~~~~~~~~~~~-d~~~l~s~s~dg~I~vWd~~---~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~ 843 (1094)
.+|..-+....+.+ .+..+++++.|+.|+||++- .+++++.+|..+|.+++|+++ .+.|++.|+.|++||++||
T Consensus 211 ~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG 290 (503)
T KOG0282|consen 211 SGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETG 290 (503)
T ss_pred cCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccc
Confidence 34444444444444 68899999999999999985 688999999999999999986 9999999999999999999
Q ss_pred cceeEEEecccCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCceEEEEe-cccCccceeeeecCceEEEeeCCCeEE
Q 001349 844 ILHLIQQIREHTKAVTGLAILQSG-EMLYSGSLDKTARVWSIGNEEIHCVQV-HDIKDQIQNLAVSNSILCFIPQGAGIK 921 (1094)
Q Consensus 844 ~~~~~~~l~~H~~~V~sv~fspdg-~~LaSgs~DgtI~vWdi~~~~~~~~~~-~~~~~~V~~v~~~~~~~~fspdg~~l~ 921 (1094)
+++..+. -...++++.|+||+ +.+++|+.|+.|+.||+++++ .++. ..+-+.|..+. |.++|+..+
T Consensus 291 --~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k--vvqeYd~hLg~i~~i~-------F~~~g~rFi 358 (503)
T KOG0282|consen 291 --QVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK--VVQEYDRHLGAILDIT-------FVDEGRRFI 358 (503)
T ss_pred --eEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH--HHHHHHhhhhheeeeE-------EccCCceEe
Confidence 7777774 34567999999988 899999999999999999986 2222 23456677776 999999999
Q ss_pred EEEeCCeEEEEcCCC-------------CceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCC--CCe
Q 001349 922 VHLRNGKTKLLNSSK-------------YPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKA--NPV 984 (1094)
Q Consensus 922 ~~~~~g~i~l~~~~~-------------~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~--~~V 984 (1094)
+.+.++.+++|+-.. ...|+..+| +.+++-+.|+.|.+|.+...-. +.....+.||. +.-
T Consensus 359 ssSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r---~nkkK~feGh~vaGys 435 (503)
T KOG0282|consen 359 SSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR---LNKKKRFEGHSVAGYS 435 (503)
T ss_pred eeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccc---cCHhhhhcceeccCce
Confidence 999999999998532 345666654 5588889999999998653322 12225677775 345
Q ss_pred EEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC---EEEEEEcCCeEEEEE
Q 001349 985 HALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE---LVYLGCKGGTVEIWD 1049 (1094)
Q Consensus 985 ~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd---~l~sgs~dg~I~vwd 1049 (1094)
..+.|+||+.++++|..|| .+.+||.++-+.+..+. |...+..+.|+|. .+++++.||.|++||
T Consensus 436 ~~v~fSpDG~~l~SGdsdG-~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 436 CQVDFSPDGRTLCSGDSDG-KVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eeEEEcCCCCeEEeecCCc-cEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 6788999999999999997 99999999999999888 6789999999987 799999999999996
No 73
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.91 E-value=4.2e-22 Score=229.26 Aligned_cols=307 Identities=16% Similarity=0.262 Sum_probs=237.6
Q ss_pred ccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeC--CEEEEEECCCeEEEEecCCCcceeEEEecccCC
Q 001349 781 LAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFR--DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTK 856 (1094)
Q Consensus 781 ~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fsp--d~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~ 856 (1094)
.+.+-++++.|+.+|.+.+||++ ..++++.++...|+++.-+| |.++.|..+|+|.+++++.+ +.+.+|+...+
T Consensus 168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~d--kil~sFk~d~g 245 (910)
T KOG1539|consen 168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFD--KILMSFKQDWG 245 (910)
T ss_pred chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccC--cEEEEEEcccc
Confidence 34467789999999999999998 57788899999999999999 79999999999999999999 78899975469
Q ss_pred CeEEEEEecCCC-EEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCc--------------------------
Q 001349 857 AVTGLAILQSGE-MLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNS-------------------------- 909 (1094)
Q Consensus 857 ~V~sv~fspdg~-~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~-------------------------- 909 (1094)
.|++++|..||+ .+++|+..|.+-+||++..++.......|.+.+....+.+.
T Consensus 246 ~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR 325 (910)
T KOG1539|consen 246 RVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPR 325 (910)
T ss_pred ceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcch
Confidence 999999999987 56677777999999998865333322222222222221111
Q ss_pred -------------eEEEe-eCCCeEEEEEeCCeEEEE-------------------------------------------
Q 001349 910 -------------ILCFI-PQGAGIKVHLRNGKTKLL------------------------------------------- 932 (1094)
Q Consensus 910 -------------~~~fs-pdg~~l~~~~~~g~i~l~------------------------------------------- 932 (1094)
.+.|- .+|..+.....|++.+.+
T Consensus 326 ~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~ 405 (910)
T KOG1539|consen 326 LLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFEN 405 (910)
T ss_pred heeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeeccc
Confidence 01111 233333333333322111
Q ss_pred ----------------------cC------------C------CCceEEEEe--CCEEEEEEcCCeEEEEECCCCceeEE
Q 001349 933 ----------------------NS------------S------KYPKCLALV--QGKVYCGCQDGAIQEIDLATGTFATI 970 (1094)
Q Consensus 933 ----------------------~~------------~------~~v~~l~~s--~~~l~sgs~Dg~I~iwDl~~~~~~~~ 970 (1094)
+. . ..+.++..+ ++..+.|+..|+|-+|++.+|-....
T Consensus 406 ~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~s 485 (910)
T KOG1539|consen 406 AREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKS 485 (910)
T ss_pred chhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecc
Confidence 10 0 123444443 56788899999999999999877633
Q ss_pred eccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEE
Q 001349 971 QTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIW 1048 (1094)
Q Consensus 971 ~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vw 1048 (1094)
+. .-..|..+|+.++.+.-+..+++++.+| .++.||..+..++.++.-+..+.++..+.. .++++.+|-.|+++
T Consensus 486 f~---~~~ah~~~V~gla~D~~n~~~vsa~~~G-ilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vv 561 (910)
T KOG1539|consen 486 FG---DSPAHKGEVTGLAVDGTNRLLVSAGADG-ILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVV 561 (910)
T ss_pred cc---cCccccCceeEEEecCCCceEEEccCcc-eEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEE
Confidence 32 1257999999999999999999999997 999999999999999888888888888765 88899999999999
Q ss_pred ECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1049 DQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1049 d~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
|..+.+.++.| .||.+.|++++|||||++|++++.|++|++||+.
T Consensus 562 D~~t~kvvR~f-~gh~nritd~~FS~DgrWlisasmD~tIr~wDlp 606 (910)
T KOG1539|consen 562 DVVTRKVVREF-WGHGNRITDMTFSPDGRWLISASMDSTIRTWDLP 606 (910)
T ss_pred EchhhhhhHHh-hccccceeeeEeCCCCcEEEEeecCCcEEEEecc
Confidence 99999999999 5999999999999999999999999999999983
No 74
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.4e-23 Score=235.31 Aligned_cols=275 Identities=21% Similarity=0.309 Sum_probs=220.6
Q ss_pred ccCcEEEEeeCCCCeEEEeCCc--------ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEec
Q 001349 783 FEMVKVLSNGHDSSADFWNHRE--------LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIR 852 (1094)
Q Consensus 783 ~d~~~l~s~s~dg~I~vWd~~~--------~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~ 852 (1094)
+.+++|+|||.||.|++|++.+ ....+..|.+.|..++...+ .|+|+|.|-+|++|+...+..-++.++.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir 114 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR 114 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence 3466899999999999999862 24556789999999887764 9999999999999999876445888999
Q ss_pred ccCCCeEEEEE-ecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEE
Q 001349 853 EHTKAVTGLAI-LQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKL 931 (1094)
Q Consensus 853 ~H~~~V~sv~f-spdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l 931 (1094)
.|.+.|.|+++ -++...+||||.|+.|.+||++++.-..+.... .-.+.++.
T Consensus 115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n-~~t~~sl~-------------------------- 167 (735)
T KOG0308|consen 115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFN-NVTVNSLG-------------------------- 167 (735)
T ss_pred cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcc-ccccccCC--------------------------
Confidence 99999999999 778999999999999999999987321111100 00000000
Q ss_pred EcCCCCceEEEEeCC--EEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEE
Q 001349 932 LNSSKYPKCLALVQG--KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMW 1009 (1094)
Q Consensus 932 ~~~~~~v~~l~~s~~--~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iw 1009 (1094)
-.+...|++++.++. .+++|+..+.+++||.++++.+ .++.||...|..+..++||..+++++.|| +|++|
T Consensus 168 sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~ki------mkLrGHTdNVr~ll~~dDGt~~ls~sSDg-tIrlW 240 (735)
T KOG0308|consen 168 SGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKI------MKLRGHTDNVRVLLVNDDGTRLLSASSDG-TIRLW 240 (735)
T ss_pred CCCccceeeeecCCcceEEEecCcccceEEeccccccce------eeeeccccceEEEEEcCCCCeEeecCCCc-eEEee
Confidence 023455667777664 5889999999999999999887 57779999999999999999999999997 99999
Q ss_pred ECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCc-EEEEecccCCcceEEEEEcCCCCEEEEEeCC
Q 001349 1010 STSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQI-RIETLQTGTSGKVQCMALDDNEEFLVIGTSD 1085 (1094)
Q Consensus 1010 d~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~-~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~D 1085 (1094)
|+...+++.++. |...|+++..+|+ .+++|+.||.|+.=|+.+.. ....++ ...+|..+..+.+.+-+-+++.|
T Consensus 241 dLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick--~daPv~~l~~~~~~~~~WvtTtd 318 (735)
T KOG0308|consen 241 DLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICK--EDAPVLKLHLHEHDNSVWVTTTD 318 (735)
T ss_pred eccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeec--CCCchhhhhhccccCCceeeecc
Confidence 999999999988 8888999999998 79999999999999999853 333333 34467888777655556778889
Q ss_pred CcEEEEeC
Q 001349 1086 GRIQAWGL 1093 (1094)
Q Consensus 1086 G~I~iWdl 1093 (1094)
+.|+-|.+
T Consensus 319 s~I~rW~~ 326 (735)
T KOG0308|consen 319 SSIKRWKL 326 (735)
T ss_pred ccceecCC
Confidence 99999864
No 75
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.90 E-value=2.5e-22 Score=227.17 Aligned_cols=253 Identities=23% Similarity=0.386 Sum_probs=205.2
Q ss_pred cCcEEEEeeCCCCeEEEeCC----cceeecccCCCcEEE-EEEeC-C--EEEEEECCCeEEEEecCCCcceeEEEecccC
Q 001349 784 EMVKVLSNGHDSSADFWNHR----ELVHVDSSENGKVLS-IACFR-D--KIFSGHSDGTIKVWTGRGSILHLIQQIREHT 855 (1094)
Q Consensus 784 d~~~l~s~s~dg~I~vWd~~----~~~~~~~~h~~~V~~-l~fsp-d--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~ 855 (1094)
++..++++|.||++++|+.. ...+.+.+|.+-|.. ++|.+ + .+++|+.|++|.+|...+. .++.++++|.
T Consensus 24 ~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~--~P~~~LkgH~ 101 (745)
T KOG0301|consen 24 DGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQA--EPLYTLKGHK 101 (745)
T ss_pred CCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCC--Cchhhhhccc
Confidence 45689999999999999986 234567788888877 88876 3 7999999999999999988 8999999999
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCC
Q 001349 856 KAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS 935 (1094)
Q Consensus 856 ~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~ 935 (1094)
..|.+++...++. ++|||.|.|+++|-...-. .....|...|+++. +-|.
T Consensus 102 snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~---~~l~gH~asVWAv~-------~l~e------------------- 151 (745)
T KOG0301|consen 102 SNVCSLSIGEDGT-LISGSWDSTAKVWRIGELV---YSLQGHTASVWAVA-------SLPE------------------- 151 (745)
T ss_pred cceeeeecCCcCc-eEecccccceEEecchhhh---cccCCcchheeeee-------ecCC-------------------
Confidence 9999999888887 9999999999999886521 12344566666555 3333
Q ss_pred CCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCe
Q 001349 936 KYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN 1015 (1094)
Q Consensus 936 ~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~ 1015 (1094)
+.+++||.|.+|++|.- ++.. +++.+|.+.|..+++-++..+ ++++.|| .|++|++ +|.
T Consensus 152 ----------~~~vTgsaDKtIklWk~--~~~l------~tf~gHtD~VRgL~vl~~~~f-lScsNDg-~Ir~w~~-~ge 210 (745)
T KOG0301|consen 152 ----------NTYVTGSADKTIKLWKG--GTLL------KTFSGHTDCVRGLAVLDDSHF-LSCSNDG-SIRLWDL-DGE 210 (745)
T ss_pred ----------CcEEeccCcceeeeccC--Cchh------hhhccchhheeeeEEecCCCe-EeecCCc-eEEEEec-cCc
Confidence 35899999999999985 5555 688899999999999988655 6778887 9999999 566
Q ss_pred EEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1016 MVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1016 ~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
++..+. |...+.++....+ .++++++|++++||+.. .+.+.+. .....||++.+-++|. +++|++||.|+||.
T Consensus 211 ~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~-lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT 286 (745)
T KOG0301|consen 211 VLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVIT-LPTTSIWSAKVLLNGD-IVVGGSDGRVRVFT 286 (745)
T ss_pred eeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEe-cCccceEEEEEeeCCC-EEEeccCceEEEEE
Confidence 666555 7888999985443 89999999999999987 6777774 2334899999988887 67788999999996
Q ss_pred C
Q 001349 1093 L 1093 (1094)
Q Consensus 1093 l 1093 (1094)
.
T Consensus 287 ~ 287 (745)
T KOG0301|consen 287 V 287 (745)
T ss_pred e
Confidence 4
No 76
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.90 E-value=3.1e-23 Score=214.30 Aligned_cols=242 Identities=19% Similarity=0.272 Sum_probs=199.1
Q ss_pred cccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeE------EEecccCCCeEEEEEecCCCEEEEEeCCCcEE
Q 001349 809 DSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLI------QQIREHTKAVTGLAILQSGEMLYSGSLDKTAR 880 (1094)
Q Consensus 809 ~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~------~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~ 880 (1094)
..+....+.|..|+|| +|++|+.||-|.|||..+|+.+.- ..+--|..+|.|+.||.|...+++|+.||.|+
T Consensus 209 KFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIK 288 (508)
T KOG0275|consen 209 KFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIK 288 (508)
T ss_pred ecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEE
Confidence 3466778899999997 999999999999999999843221 12334788999999999999999999999999
Q ss_pred EEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEE
Q 001349 881 VWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEI 960 (1094)
Q Consensus 881 vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iw 960 (1094)
||.+.+|.........|...|+++. |+.|+. .+++++.|.++++-
T Consensus 289 vWri~tG~ClRrFdrAHtkGvt~l~-------FSrD~S----------------------------qiLS~sfD~tvRiH 333 (508)
T KOG0275|consen 289 VWRIETGQCLRRFDRAHTKGVTCLS-------FSRDNS----------------------------QILSASFDQTVRIH 333 (508)
T ss_pred EEEEecchHHHHhhhhhccCeeEEE-------EccCcc----------------------------hhhcccccceEEEe
Confidence 9999998522222223455566665 655554 48899999999999
Q ss_pred ECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec---CCCCEEEEEEeCC---
Q 001349 961 DLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP---TLSEVRAMVVSSE--- 1034 (1094)
Q Consensus 961 Dl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~---~~~~v~~l~~spd--- 1034 (1094)
-+.+|+++ +.+.||+..|+...|.++|..+++++.|| +|++|+.++..++.+|+ ....|.++..-|.
T Consensus 334 GlKSGK~L------KEfrGHsSyvn~a~ft~dG~~iisaSsDg-tvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpe 406 (508)
T KOG0275|consen 334 GLKSGKCL------KEFRGHSSYVNEATFTDDGHHIISASSDG-TVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPE 406 (508)
T ss_pred ccccchhH------HHhcCccccccceEEcCCCCeEEEecCCc-cEEEecCcchhhhhhccCCCCcccceeEEEcCCCCc
Confidence 99999998 77889999999999999999999999997 99999999999999998 3456777777665
Q ss_pred EEEEEEcCCeEEEEECCCCcEEEEecccC--CcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1035 LVYLGCKGGTVEIWDQKRQIRIETLQTGT--SGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1035 ~l~sgs~dg~I~vwd~~t~~~~~~l~~~h--~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
.++++...++|+|-++. |+.++.+..|. .+...+.+.||.|.++++.+.|+.++.|.+
T Consensus 407 h~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~ 466 (508)
T KOG0275|consen 407 HFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSV 466 (508)
T ss_pred eEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEe
Confidence 88889999999999985 67788886553 235566679999999999999999988864
No 77
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.1e-22 Score=236.62 Aligned_cols=238 Identities=20% Similarity=0.290 Sum_probs=185.8
Q ss_pred HhhhccccccccccCcEEEEeeCCCCeEEEeCCc----------------------------------------------
Q 001349 771 GLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRE---------------------------------------------- 804 (1094)
Q Consensus 771 ~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~---------------------------------------------- 804 (1094)
.|...+...-|+.||+|+|+||.|+.|+||.+..
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 4455566777999999999999999999996422
Q ss_pred ----------------ceeecccCCCcEEEEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEec-C
Q 001349 805 ----------------LVHVDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQ-S 866 (1094)
Q Consensus 805 ----------------~~~~~~~h~~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fsp-d 866 (1094)
+...+.||.+.|..+.||.+ +|+|++.|.|||+|++... .|+..|. |.+.|+||+|+| |
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~--~CL~~F~-HndfVTcVaFnPvD 421 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRK--ECLKVFS-HNDFVTCVAFNPVD 421 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCc--ceeeEEe-cCCeeEEEEecccC
Confidence 11345689999999999997 9999999999999999988 8999885 999999999999 8
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCC
Q 001349 867 GEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQG 946 (1094)
Q Consensus 867 g~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~ 946 (1094)
.+|++|||-||.||||++... +.....+...-|++++ |.|||++
T Consensus 422 DryFiSGSLD~KvRiWsI~d~--~Vv~W~Dl~~lITAvc-------y~PdGk~--------------------------- 465 (712)
T KOG0283|consen 422 DRYFISGSLDGKVRLWSISDK--KVVDWNDLRDLITAVC-------YSPDGKG--------------------------- 465 (712)
T ss_pred CCcEeecccccceEEeecCcC--eeEeehhhhhhheeEE-------eccCCce---------------------------
Confidence 999999999999999999886 5555566677788877 9999986
Q ss_pred EEEEEEcCCeEEEEECCCCceeEEecc----ceeecCCCCCeEEEEEeCCcc-EEEEEECCCCEEEEEECCCCeEEEEec
Q 001349 947 KVYCGCQDGAIQEIDLATGTFATIQTG----HRKLLGKANPVHALQVHNGLV-YTASTSLDGAAVKMWSTSNYNMVGSLP 1021 (1094)
Q Consensus 947 ~l~sgs~Dg~I~iwDl~~~~~~~~~~~----~~~~~~h~~~V~sl~fs~~~~-~las~s~Dg~~I~iwd~~~~~~~~~~~ 1021 (1094)
.++|+.+|.+++|+....+....... .++.. | ..|+.+.|.|... -+...+.| ..|||||.++..++..|+
T Consensus 466 -avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~-~-~rITG~Q~~p~~~~~vLVTSnD-SrIRI~d~~~~~lv~KfK 541 (712)
T KOG0283|consen 466 -AVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQ-G-KRITGLQFFPGDPDEVLVTSND-SRIRIYDGRDKDLVHKFK 541 (712)
T ss_pred -EEEEEeccEEEEEEccCCeEEEeeeEeeccCcccc-C-ceeeeeEecCCCCCeEEEecCC-CceEEEeccchhhhhhhc
Confidence 56677777778887776655433211 11111 2 2899999986544 23444556 499999999888888887
Q ss_pred C---CCCEEEEEEeCC--EEEEEEcCCeEEEEECC
Q 001349 1022 T---LSEVRAMVVSSE--LVYLGCKGGTVEIWDQK 1051 (1094)
Q Consensus 1022 ~---~~~v~~l~~spd--~l~sgs~dg~I~vwd~~ 1051 (1094)
+ ...-....|+.| +|++|++|..|+||+..
T Consensus 542 G~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 542 GFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred ccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 3 233345566666 99999999999999973
No 78
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=3.9e-22 Score=218.18 Aligned_cols=229 Identities=19% Similarity=0.263 Sum_probs=196.3
Q ss_pred cccccccCcEEEEeeCCCCeEEEeCCc--ceeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcceeEEEec
Q 001349 778 YSPLAFEMVKVLSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIR 852 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~~~~l~ 852 (1094)
...|..||..++.|...|.|+|||.++ .+..+.+|+.+|..+.|+|. .+++|+.|+.+++||+.+. .....+.
T Consensus 73 s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a--~v~~~l~ 150 (487)
T KOG0310|consen 73 SVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA--YVQAELS 150 (487)
T ss_pred EEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc--EEEEEec
Confidence 455667899999999999999999875 67888999999999999994 8999999999999999998 4566899
Q ss_pred ccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEE
Q 001349 853 EHTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKL 931 (1094)
Q Consensus 853 ~H~~~V~sv~fsp-dg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l 931 (1094)
+|++.|.+.+|+| ++.+++|||.||+||+||++... ..+...+|..+|.++. |.|.|..
T Consensus 151 ~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~elnhg~pVe~vl-------~lpsgs~------------ 210 (487)
T KOG0310|consen 151 GHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT-SRVVELNHGCPVESVL-------ALPSGSL------------ 210 (487)
T ss_pred CCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC-ceeEEecCCCceeeEE-------EcCCCCE------------
Confidence 9999999999999 56799999999999999999864 4555667778888776 7776653
Q ss_pred EcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEEC
Q 001349 932 LNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWST 1011 (1094)
Q Consensus 932 ~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~ 1011 (1094)
++......|++||+.+|.... ..+..|...|+|+.+..++..+.+++.|+ .|++||+
T Consensus 211 -----------------iasAgGn~vkVWDl~~G~qll-----~~~~~H~KtVTcL~l~s~~~rLlS~sLD~-~VKVfd~ 267 (487)
T KOG0310|consen 211 -----------------IASAGGNSVKVWDLTTGGQLL-----TSMFNHNKTVTCLRLASDSTRLLSGSLDR-HVKVFDT 267 (487)
T ss_pred -----------------EEEcCCCeEEEEEecCCceeh-----hhhhcccceEEEEEeecCCceEeeccccc-ceEEEEc
Confidence 333445789999999776553 33445999999999999999999999997 9999999
Q ss_pred CCCeEEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECC
Q 001349 1012 SNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQK 1051 (1094)
Q Consensus 1012 ~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~ 1051 (1094)
.+.+.+..+.-.++|.+++++|+ .+++|..||.+.+-+..
T Consensus 268 t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 268 TNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred cceEEEEeeecccceeeEEecCCCceEEEecccceeeeehhh
Confidence 99999999999999999999997 89999999998887543
No 79
>PTZ00421 coronin; Provisional
Probab=99.90 E-value=1.9e-21 Score=229.98 Aligned_cols=232 Identities=16% Similarity=0.218 Sum_probs=168.5
Q ss_pred EEEEEECCCeEEEEecCCCcc--------e---eEEEecccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCceEEE
Q 001349 825 KIFSGHSDGTIKVWTGRGSIL--------H---LIQQIREHTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEEIHCV 892 (1094)
Q Consensus 825 ~LaSgs~Dg~I~vWd~~t~~~--------~---~~~~l~~H~~~V~sv~fsp-dg~~LaSgs~DgtI~vWdi~~~~~~~~ 892 (1094)
.+++++.+.....|+..++.. + ....+.+|.+.|++++|+| ++++|++||.||+|++||+.++.....
T Consensus 34 ~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~ 113 (493)
T PTZ00421 34 NTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQN 113 (493)
T ss_pred CcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccc
Confidence 556666666666666544310 0 0124678999999999999 889999999999999999986521000
Q ss_pred EecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC---CEEEEEEcCCeEEEEECCCCceeE
Q 001349 893 QVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ---GKVYCGCQDGAIQEIDLATGTFAT 969 (1094)
Q Consensus 893 ~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~---~~l~sgs~Dg~I~iwDl~~~~~~~ 969 (1094)
...+ ...+..|...|.++.|++ +.+++|+.|++|++||+.++...
T Consensus 114 ----~~~~---------------------------l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~- 161 (493)
T PTZ00421 114 ----ISDP---------------------------IVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAV- 161 (493)
T ss_pred ----cCcc---------------------------eEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEE-
Confidence 0000 001122344555666653 35899999999999999998776
Q ss_pred EeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCC-CEEEEEEeCC--EEEEEE----c
Q 001349 970 IQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLS-EVRAMVVSSE--LVYLGC----K 1041 (1094)
Q Consensus 970 ~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~-~v~~l~~spd--~l~sgs----~ 1041 (1094)
..+.+|...|.+++|++++.++++++.|+ +|++||+++++.+.++. |.+ .+..+.|.++ .+++++ .
T Consensus 162 -----~~l~~h~~~V~sla~spdG~lLatgs~Dg-~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~ 235 (493)
T PTZ00421 162 -----EVIKCHSDQITSLEWNLDGSLLCTTSKDK-KLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQ 235 (493)
T ss_pred -----EEEcCCCCceEEEEEECCCCEEEEecCCC-EEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCC
Confidence 45678889999999999999999999996 99999999999888877 433 3456677776 555543 4
Q ss_pred CCeEEEEECCCCc-EEEEecccCCcceEEEEEcCCCCEEEEEe-CCCcEEEEeCC
Q 001349 1042 GGTVEIWDQKRQI-RIETLQTGTSGKVQCMALDDNEEFLVIGT-SDGRIQAWGLS 1094 (1094)
Q Consensus 1042 dg~I~vwd~~t~~-~~~~l~~~h~~~I~~l~~Spdg~~L~sgs-~DG~I~iWdls 1094 (1094)
|+.|++||+++.. ++......+...+....|++|+++|++|+ .||+|++||+.
T Consensus 236 Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~ 290 (493)
T PTZ00421 236 QRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELM 290 (493)
T ss_pred CCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEee
Confidence 7999999998754 44444223344566778999999999888 59999999973
No 80
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=8e-22 Score=204.85 Aligned_cols=259 Identities=17% Similarity=0.222 Sum_probs=204.1
Q ss_pred cccccccCcEEEEeeCCCCeEEEeCC-cceeecccCCCcEEEEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEecccC
Q 001349 778 YSPLAFEMVKVLSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHT 855 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg~I~vWd~~-~~~~~~~~h~~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~ 855 (1094)
...|++....|+.+++||++++|+.. ........|.+++.+++|.++ .+++|+.||.|+.+|+.++ ....+..|.
T Consensus 18 ~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~---~~~~igth~ 94 (323)
T KOG1036|consen 18 SVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTG---NEDQIGTHD 94 (323)
T ss_pred eEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCC---cceeeccCC
Confidence 34455567788888999999999998 334455679999999999997 9999999999999999998 345567899
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCC
Q 001349 856 KAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS 935 (1094)
Q Consensus 856 ~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~ 935 (1094)
.+|.+|.+++-...+++||+|++|++||.+.. ..... ++..
T Consensus 95 ~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~--~~~~~-------------------------------------~d~~ 135 (323)
T KOG1036|consen 95 EGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK--VVVGT-------------------------------------FDQG 135 (323)
T ss_pred CceEEEEeeccCCeEEEcccCccEEEEecccc--ccccc-------------------------------------cccC
Confidence 99999999998889999999999999999862 11111 1223
Q ss_pred CCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCC-
Q 001349 936 KYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNY- 1014 (1094)
Q Consensus 936 ~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~- 1014 (1094)
+.|.|+...++.|++|+.|..|.+||+++...... ..-..-...+.++++.|++.-.+.++.|| .|.+=.+...
T Consensus 136 kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q----~reS~lkyqtR~v~~~pn~eGy~~sSieG-RVavE~~d~s~ 210 (323)
T KOG1036|consen 136 KKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQ----RRESSLKYQTRCVALVPNGEGYVVSSIEG-RVAVEYFDDSE 210 (323)
T ss_pred ceEEEEeccCCEEEEeecCceEEEEEcccccchhh----hccccceeEEEEEEEecCCCceEEEeecc-eEEEEccCCch
Confidence 45667777788999999999999999998765421 12223345789999999877778888898 6666555443
Q ss_pred ---eEEEEec-C---------CCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEE
Q 001349 1015 ---NMVGSLP-T---------LSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFL 1079 (1094)
Q Consensus 1015 ---~~~~~~~-~---------~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L 1079 (1094)
+....|+ | .-+|++++|+|- .+++|+.||.|.+||..+.+.+..+. .....|.+++|+.||..|
T Consensus 211 ~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~-~~~~SI~slsfs~dG~~L 289 (323)
T KOG1036|consen 211 EAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLA-KYETSISSLSFSMDGSLL 289 (323)
T ss_pred HHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhcc-CCCCceEEEEeccCCCeE
Confidence 2222333 2 145899999997 79999999999999999999998883 556689999999999999
Q ss_pred EEEeC
Q 001349 1080 VIGTS 1084 (1094)
Q Consensus 1080 ~sgs~ 1084 (1094)
|++++
T Consensus 290 Aia~s 294 (323)
T KOG1036|consen 290 AIASS 294 (323)
T ss_pred EEEec
Confidence 99875
No 81
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=7.6e-22 Score=203.87 Aligned_cols=262 Identities=14% Similarity=0.205 Sum_probs=203.6
Q ss_pred eeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 001349 806 VHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVW 882 (1094)
Q Consensus 806 ~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vW 882 (1094)
..+.....+.|.+++|||. +++.||.||+||+|++.......-+....|.++|.+++|+.||..+++|+.|+.+++|
T Consensus 20 ~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 20 YEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLW 99 (347)
T ss_pred eecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEE
Confidence 3445567899999999993 7889999999999999873112225567899999999999999999999999999999
Q ss_pred ECCCCceEEEEecccCccceeeeecCceEEEeeCCC--eEEEEEeCCeEEEEcCCCC-----------ceEEEEeCCEEE
Q 001349 883 SIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGA--GIKVHLRNGKTKLLNSSKY-----------PKCLALVQGKVY 949 (1094)
Q Consensus 883 di~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~--~l~~~~~~g~i~l~~~~~~-----------v~~l~~s~~~l~ 949 (1094)
|+.+++...+ ..|..+|..+. |.+... .+++++||.++++||.... ++++......++
T Consensus 100 DL~S~Q~~~v--~~Hd~pvkt~~-------wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~v 170 (347)
T KOG0647|consen 100 DLASGQVSQV--AAHDAPVKTCH-------WVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAV 170 (347)
T ss_pred EccCCCeeee--eecccceeEEE-------EecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeE
Confidence 9999954444 45588899888 555444 8899999999999997532 334434445688
Q ss_pred EEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEE--EEec-CC---
Q 001349 950 CGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMV--GSLP-TL--- 1023 (1094)
Q Consensus 950 sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~--~~~~-~~--- 1023 (1094)
++..++.|.+|+++++..... +....-.-.+.+++...+....+.|+.+| .+-|..+..+.+. .+|+ |.
T Consensus 171 Vata~r~i~vynL~n~~te~k----~~~SpLk~Q~R~va~f~d~~~~alGsiEG-rv~iq~id~~~~~~nFtFkCHR~~~ 245 (347)
T KOG0647|consen 171 VATAERHIAVYNLENPPTEFK----RIESPLKWQTRCVACFQDKDGFALGSIEG-RVAIQYIDDPNPKDNFTFKCHRSTN 245 (347)
T ss_pred EEecCCcEEEEEcCCCcchhh----hhcCcccceeeEEEEEecCCceEeeeecc-eEEEEecCCCCccCceeEEEeccCC
Confidence 999999999999987754311 00011223578999887777678888887 8888888776332 3333 22
Q ss_pred ------CCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEE
Q 001349 1024 ------SEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIG 1082 (1094)
Q Consensus 1024 ------~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sg 1082 (1094)
..|++++|+|. .+++++.||++.+||......+.+. ..|..+|++.+|+.+|.+++-+
T Consensus 246 ~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s-~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 246 SVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTS-ETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred CCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhcc-CcCCCccceeEecCCCCEEEEE
Confidence 24788999997 7999999999999999988888887 4789999999999999988754
No 82
>PTZ00420 coronin; Provisional
Probab=99.89 E-value=4.8e-21 Score=227.30 Aligned_cols=227 Identities=16% Similarity=0.182 Sum_probs=164.6
Q ss_pred EEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeee
Q 001349 828 SGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS-GEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAV 906 (1094)
Q Consensus 828 Sgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspd-g~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~ 906 (1094)
.|+.+|.|++|+.... ..+..+.+|.+.|++++|+|+ +++|+|||.||+|+|||+.++....... ..++
T Consensus 49 gGG~~gvI~L~~~~r~--~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i---~~p~----- 118 (568)
T PTZ00420 49 GGGLIGAIRLENQMRK--PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEI---KDPQ----- 118 (568)
T ss_pred CCCceeEEEeeecCCC--ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccccc---ccce-----
Confidence 3667899999998776 678899999999999999996 8999999999999999998642100000 0000
Q ss_pred cCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCC---EEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCC
Q 001349 907 SNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQG---KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANP 983 (1094)
Q Consensus 907 ~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~---~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~ 983 (1094)
..+-.|...|.++.|++. .+++|+.|++|++||++++.... .+. |...
T Consensus 119 ----------------------~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~------~i~-~~~~ 169 (568)
T PTZ00420 119 ----------------------CILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAF------QIN-MPKK 169 (568)
T ss_pred ----------------------EEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEE------EEe-cCCc
Confidence 001123344555555541 26789999999999999988653 222 4568
Q ss_pred eEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEE-----EEEeCC--EEEEEEcCC----eEEEEECC
Q 001349 984 VHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRA-----MVVSSE--LVYLGCKGG----TVEIWDQK 1051 (1094)
Q Consensus 984 V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~-----l~~spd--~l~sgs~dg----~I~vwd~~ 1051 (1094)
|.+++|++++.++++++.|+ .|+|||+++++.+.++. |.+.+.. ..|+++ ++++++.|+ .|+|||++
T Consensus 170 V~SlswspdG~lLat~s~D~-~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr 248 (568)
T PTZ00420 170 LSSLKWNIKGNLLSGTCVGK-HMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLK 248 (568)
T ss_pred EEEEEECCCCCEEEEEecCC-EEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECC
Confidence 99999999999999998886 99999999999988887 5444332 233455 788877664 79999998
Q ss_pred C-CcEEEEec-ccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1052 R-QIRIETLQ-TGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1052 t-~~~~~~l~-~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
+ ++++..+. ..+.+.+......++|.++++|+.|++|++|++.
T Consensus 249 ~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~ 293 (568)
T PTZ00420 249 NTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHS 293 (568)
T ss_pred CCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEcc
Confidence 5 55665542 1223334444445568899999999999999973
No 83
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=6.2e-21 Score=199.41 Aligned_cols=271 Identities=15% Similarity=0.210 Sum_probs=209.6
Q ss_pred ccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeC--CEEEEEEC--CCeEEEEecCCCcceeE
Q 001349 775 LRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFR--DKIFSGHS--DGTIKVWTGRGSILHLI 848 (1094)
Q Consensus 775 ~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fsp--d~LaSgs~--Dg~I~vWd~~t~~~~~~ 848 (1094)
.+....++.+|..+++++.|.++++||.. ....+...+.-.|..++|.. +.++.++. |.+|+.-++.++ +.+
T Consensus 16 ~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN--kyl 93 (311)
T KOG1446|consen 16 KINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN--KYL 93 (311)
T ss_pred ceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecC--ceE
Confidence 34456677799999999999999999987 34555666666888888865 35555554 899999999999 899
Q ss_pred EEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCe
Q 001349 849 QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGK 928 (1094)
Q Consensus 849 ~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~ 928 (1094)
+.+.||...|+++..+|-+..++|+|.|++|++||++..+....... . ....++|.|.|-.
T Consensus 94 RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~--~--------~~pi~AfDp~GLi--------- 154 (311)
T KOG1446|consen 94 RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL--S--------GRPIAAFDPEGLI--------- 154 (311)
T ss_pred EEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec--C--------CCcceeECCCCcE---------
Confidence 99999999999999999889999999999999999997532211111 1 1223347777754
Q ss_pred EEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCc--eeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEE
Q 001349 929 TKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGT--FATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAV 1006 (1094)
Q Consensus 929 i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~--~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I 1006 (1094)
+++|.....|++||++.-. +..++.. ..+.....+.+.|+|+|.++..+...+ .+
T Consensus 155 -------------------fA~~~~~~~IkLyD~Rs~dkgPF~tf~i---~~~~~~ew~~l~FS~dGK~iLlsT~~s-~~ 211 (311)
T KOG1446|consen 155 -------------------FALANGSELIKLYDLRSFDKGPFTTFSI---TDNDEAEWTDLEFSPDGKSILLSTNAS-FI 211 (311)
T ss_pred -------------------EEEecCCCeEEEEEecccCCCCceeEcc---CCCCccceeeeEEcCCCCEEEEEeCCC-cE
Confidence 5556666689999998642 2222111 113456789999999999998887775 99
Q ss_pred EEEECCCCeEEEEecC---CC-CEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEE
Q 001349 1007 KMWSTSNYNMVGSLPT---LS-EVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLV 1080 (1094)
Q Consensus 1007 ~iwd~~~~~~~~~~~~---~~-~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~ 1080 (1094)
.+.|.-+|....++.. .. ......|+|| ++++|+.||+|.+|++++|..+..+...+.+++.++.|+|...+++
T Consensus 212 ~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~ 291 (311)
T KOG1446|consen 212 YLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFV 291 (311)
T ss_pred EEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeee
Confidence 9999999999888873 12 2356788898 8999999999999999999999999655888999999999877777
Q ss_pred EEeCCCcEEEE
Q 001349 1081 IGTSDGRIQAW 1091 (1094)
Q Consensus 1081 sgs~DG~I~iW 1091 (1094)
+++. .+-+|
T Consensus 292 sa~s--~l~fw 300 (311)
T KOG1446|consen 292 SASS--NLVFW 300 (311)
T ss_pred ecCc--eEEEE
Confidence 7654 57777
No 84
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.8e-21 Score=202.20 Aligned_cols=242 Identities=21% Similarity=0.339 Sum_probs=193.1
Q ss_pred HhhhccccccccccCcEEEEeeCCCCeEEEeCCc--ceeecccCCCcEEEEEEeCC----EEEEEECCCeEEEEecCCCc
Q 001349 771 GLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFRD----KIFSGHSDGTIKVWTGRGSI 844 (1094)
Q Consensus 771 ~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~fspd----~LaSgs~Dg~I~vWd~~t~~ 844 (1094)
+.........++.++.++++||.|-+|+|||... ....+..|.+.|+++.|.++ .|++|+.||.|.+|++..-
T Consensus 39 ~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W- 117 (362)
T KOG0294|consen 39 FSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW- 117 (362)
T ss_pred ccccccceeEEEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe-
Confidence 3444555677888999999999999999999983 44567789999999999985 7999999999999998766
Q ss_pred ceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEE
Q 001349 845 LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHL 924 (1094)
Q Consensus 845 ~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~ 924 (1094)
.++.++++|.+.|+.++++|.|++-++.+.|+.++.||+-.|..-..... +.. +..+.|+|.|.++++..
T Consensus 118 -~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L--~~~-------at~v~w~~~Gd~F~v~~ 187 (362)
T KOG0294|consen 118 -ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL--KNK-------ATLVSWSPQGDHFVVSG 187 (362)
T ss_pred -EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc--CCc-------ceeeEEcCCCCEEEEEe
Confidence 89999999999999999999999999999999999999988852222111 222 22344999999887776
Q ss_pred eCCeEEEEcC-----------CCCceEEEEeC-CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEE--e
Q 001349 925 RNGKTKLLNS-----------SKYPKCLALVQ-GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQV--H 990 (1094)
Q Consensus 925 ~~g~i~l~~~-----------~~~v~~l~~s~-~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~f--s 990 (1094)
.++ +.+|.. ...+.|+.|.+ +.+++|..|+.|.+||...+.+. ..+.+|...|..+.+ .
T Consensus 188 ~~~-i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~------~~~~AH~~RVK~i~~~~~ 260 (362)
T KOG0294|consen 188 RNK-IDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPL------TEFLAHENRVKDIASYTN 260 (362)
T ss_pred ccE-EEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccc------eeeecchhheeeeEEEec
Confidence 654 344432 34577777764 77999999999999999987766 567899999999996 4
Q ss_pred CCccEEEEEECCCCEEEEEECCCC-----eEEEEecCCCCEEEEEE
Q 001349 991 NGLVYTASTSLDGAAVKMWSTSNY-----NMVGSLPTLSEVRAMVV 1031 (1094)
Q Consensus 991 ~~~~~las~s~Dg~~I~iwd~~~~-----~~~~~~~~~~~v~~l~~ 1031 (1094)
|++.++++.+.|| .|++||++.. +++..+..+..++|+..
T Consensus 261 ~~~~~lvTaSSDG-~I~vWd~~~~~k~~~~~l~e~n~~~RltCl~~ 305 (362)
T KOG0294|consen 261 PEHEYLVTASSDG-FIKVWDIDMETKKRPTLLAELNTNVRLTCLRV 305 (362)
T ss_pred CCceEEEEeccCc-eEEEEEccccccCCcceeEEeecCCccceeee
Confidence 7889999999998 9999999865 34455555556666554
No 85
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.6e-22 Score=203.99 Aligned_cols=228 Identities=17% Similarity=0.199 Sum_probs=181.4
Q ss_pred cccccCcEEEEeeCCCCeEEEeCC---cceeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcceeEEEecc
Q 001349 780 PLAFEMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIRE 853 (1094)
Q Consensus 780 ~~~~d~~~l~s~s~dg~I~vWd~~---~~~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~ 853 (1094)
+-....+.+++++.||++++||.. .+++.++.|...|.++.|++- .++++|.||+|++|+..-+ ..++++.|
T Consensus 68 Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~--~Sv~Tf~g 145 (311)
T KOG0277|consen 68 WSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP--NSVQTFNG 145 (311)
T ss_pred ecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC--cceEeecC
Confidence 333456689999999999999976 578889999999999999983 7888899999999999887 78999999
Q ss_pred cCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEE
Q 001349 854 HTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLL 932 (1094)
Q Consensus 854 H~~~V~sv~fsp-dg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~ 932 (1094)
|...|....|+| .++.++++|.||++++||++... +.+....|...+.+.. |+.
T Consensus 146 h~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g-k~~~i~ah~~Eil~cd-------w~k----------------- 200 (311)
T KOG0277|consen 146 HNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPG-KFMSIEAHNSEILCCD-------WSK----------------- 200 (311)
T ss_pred CccEEEEEecCCCCCCeEEEccCCceEEEEEecCCC-ceeEEEeccceeEeec-------ccc-----------------
Confidence 999999999999 78999999999999999987642 1111222223333333 111
Q ss_pred cCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCC-ccEEEEEECCCCEEEEEEC
Q 001349 933 NSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG-LVYTASTSLDGAAVKMWST 1011 (1094)
Q Consensus 933 ~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~-~~~las~s~Dg~~I~iwd~ 1011 (1094)
+.+..+++|+.|+.|+.||+++-+... ..+.+|.-.|..++|+|. ..++++++.|- +++|||.
T Consensus 201 ----------y~~~vl~Tg~vd~~vr~wDir~~r~pl-----~eL~gh~~AVRkvk~Sph~~~lLaSasYDm-T~riw~~ 264 (311)
T KOG0277|consen 201 ----------YNHNVLATGGVDNLVRGWDIRNLRTPL-----FELNGHGLAVRKVKFSPHHASLLASASYDM-TVRIWDP 264 (311)
T ss_pred ----------cCCcEEEecCCCceEEEEehhhccccc-----eeecCCceEEEEEecCcchhhHhhhccccc-eEEeccc
Confidence 123569999999999999999765331 567899999999999985 55788999885 9999999
Q ss_pred CCC-eEEEEec-CCCCEEEEEEeCC---EEEEEEcCCeEEEEEC
Q 001349 1012 SNY-NMVGSLP-TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQ 1050 (1094)
Q Consensus 1012 ~~~-~~~~~~~-~~~~v~~l~~spd---~l~sgs~dg~I~vwd~ 1050 (1094)
..+ ..+.+.. |...+..+.|++- ++++.+.|+.++||+.
T Consensus 265 ~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 265 ERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 844 4555555 5566778888754 8999999999999985
No 86
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=4.4e-22 Score=199.88 Aligned_cols=254 Identities=17% Similarity=0.251 Sum_probs=189.3
Q ss_pred HHHhhhccccccccccCcEEEEeeCCCCeEEEeCC-----cceeecccCCCcEEEEEEeC----CEEEEEECCCeEEEEe
Q 001349 769 MKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR-----ELVHVDSSENGKVLSIACFR----DKIFSGHSDGTIKVWT 839 (1094)
Q Consensus 769 ~~~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~-----~~~~~~~~h~~~V~~l~fsp----d~LaSgs~Dg~I~vWd 839 (1094)
...|+..++...+.++|.+|+|++.|++|+|+... ..+..+.||.++|+.++|.. ++|+++++||.|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 35567778888899999999999999999999986 35677899999999999975 3999999999999999
Q ss_pred cCCCcceeEEEecccCCCeEEEEEecC--CCEEEEEeCCCcEEEEECCCCc--eEEEEecccCccceeeeecCceEEEee
Q 001349 840 GRGSILHLIQQIREHTKAVTGLAILQS--GEMLYSGSLDKTARVWSIGNEE--IHCVQVHDIKDQIQNLAVSNSILCFIP 915 (1094)
Q Consensus 840 ~~t~~~~~~~~l~~H~~~V~sv~fspd--g~~LaSgs~DgtI~vWdi~~~~--~~~~~~~~~~~~V~~v~~~~~~~~fsp 915 (1094)
-.++++.....+..|...|++|+|.|. |-.|++++.||+|.|.+.+... ........|.-.|+++. +.|
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVs-------wap 159 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVS-------WAP 159 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceee-------ecC
Confidence 999988888899999999999999994 7789999999999999887641 01111112222333333 211
Q ss_pred CCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccE
Q 001349 916 QGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVY 995 (1094)
Q Consensus 916 dg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~ 995 (1094)
.. .+| ... .|. +. ..-..
T Consensus 160 a~-----------------------------------~~g----------~~~----------~~~-~~------~~~kr 177 (299)
T KOG1332|consen 160 AS-----------------------------------APG----------SLV----------DQG-PA------AKVKR 177 (299)
T ss_pred cC-----------------------------------CCc----------ccc----------ccC-cc------cccce
Confidence 10 000 000 000 00 00245
Q ss_pred EEEEECCCCEEEEEECCCCe--EEEEec-CCCCEEEEEEeCC------EEEEEEcCCeEEEEECCCC--cEEEEecccCC
Q 001349 996 TASTSLDGAAVKMWSTSNYN--MVGSLP-TLSEVRAMVVSSE------LVYLGCKGGTVEIWDQKRQ--IRIETLQTGTS 1064 (1094)
Q Consensus 996 las~s~Dg~~I~iwd~~~~~--~~~~~~-~~~~v~~l~~spd------~l~sgs~dg~I~vwd~~t~--~~~~~l~~~h~ 1064 (1094)
+++++.|. .|+||+..+++ .-+++. |.+.|+.++|.|. ++++++.||+|.||-.... .-..++.....
T Consensus 178 lvSgGcDn-~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~ 256 (299)
T KOG1332|consen 178 LVSGGCDN-LVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFP 256 (299)
T ss_pred eeccCCcc-ceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCC
Confidence 78888885 99999998753 334455 7899999999997 6999999999999976531 11122222345
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1065 GKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1065 ~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
..++.+.||+.|+.|+.++.|+.|.+|.
T Consensus 257 ~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 257 DVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred cceEEEEEeccccEEEEecCCcEEEEEE
Confidence 6799999999999999999999999995
No 87
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.88 E-value=7.7e-22 Score=222.01 Aligned_cols=272 Identities=15% Similarity=0.196 Sum_probs=210.6
Q ss_pred CcEEEEeeCCCCeEEEeCCccee-------e--------------------------------cccCCCcEEEEEEeCC-
Q 001349 785 MVKVLSNGHDSSADFWNHRELVH-------V--------------------------------DSSENGKVLSIACFRD- 824 (1094)
Q Consensus 785 ~~~l~s~s~dg~I~vWd~~~~~~-------~--------------------------------~~~h~~~V~~l~fspd- 824 (1094)
...++|++.|++|++|++..+.+ + ..+....|.+++.+|+
T Consensus 392 ~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g 471 (1080)
T KOG1408|consen 392 RGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDG 471 (1080)
T ss_pred ccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCc
Confidence 44589999999999999752110 0 0112447999999997
Q ss_pred -EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEec---CCCEEEEEeCCCcEEEEECCCCceEEEEecccCcc
Q 001349 825 -KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQ---SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQ 900 (1094)
Q Consensus 825 -~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fsp---dg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~ 900 (1094)
+|++|..-|+++|||+..- .....+..|...|.|+.|+. ..++|+++|.|..|.|+|+..+-.......+|...
T Consensus 472 qhLAsGDr~GnlrVy~Lq~l--~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSss 549 (1080)
T KOG1408|consen 472 QHLASGDRGGNLRVYDLQEL--EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSS 549 (1080)
T ss_pred ceecccCccCceEEEEehhh--hhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccc
Confidence 9999999999999999987 56777889999999999985 35799999999999999998753222223345566
Q ss_pred ceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCC
Q 001349 901 IQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGK 980 (1094)
Q Consensus 901 V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h 980 (1094)
|+++. |...|-. -++++++.|..|.+--.........+..+....+|
T Consensus 550 ITsvK-------Fa~~gln--------------------------~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~k 596 (1080)
T KOG1408|consen 550 ITSVK-------FACNGLN--------------------------RKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSK 596 (1080)
T ss_pred eeEEE-------EeecCCc--------------------------eEEEeccCchhhheehhccccCceecccccccccc
Confidence 66665 4433311 14778888887765332221112222222222222
Q ss_pred CCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec----CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCc
Q 001349 981 ANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP----TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQI 1054 (1094)
Q Consensus 981 ~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~----~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~ 1054 (1094)
..++.++..|...++++++.| +.|+|||+.+++.++.|+ |.+....+..+|. |+++.+.|.++.++|..+|+
T Consensus 597 -tTlYDm~Vdp~~k~v~t~cQD-rnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgE 674 (1080)
T KOG1408|consen 597 -TTLYDMAVDPTSKLVVTVCQD-RNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGE 674 (1080)
T ss_pred -ceEEEeeeCCCcceEEEEecc-cceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccch
Confidence 478999999999999999999 599999999999999998 3466777778777 89999999999999999999
Q ss_pred EEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1055 RIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1055 ~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
++... .||...|+.+.|++|-+.|++.+.||-|.||.+.
T Consensus 675 cvA~m-~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 675 CVAQM-TGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred hhhhh-cCcchheeeeeecccchhheeecCCceEEEEECc
Confidence 99999 6999999999999999999999999999999874
No 88
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=7.9e-21 Score=197.01 Aligned_cols=289 Identities=16% Similarity=0.217 Sum_probs=210.9
Q ss_pred HHHHHHhhhccccccccccCcEEEEeeCCCCeEEEeCCcc-------eeecccCCCcEEEEEEeCC---EEEEEECCCeE
Q 001349 766 KDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHREL-------VHVDSSENGKVLSIACFRD---KIFSGHSDGTI 835 (1094)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~~-------~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I 835 (1094)
-.++++|..-+....|+.||.+++|++.|++|++|+++.. +... -.-+..+.+.|+|| .+++.-...++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n-ve~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN-VEYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc-ccCCCceEEEECCCcceEEEEEccCCEE
Confidence 3567888888888999999999999999999999998731 1111 12346789999998 77777788899
Q ss_pred EEEecCCC---ccee-------EEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeee
Q 001349 836 KVWTGRGS---ILHL-------IQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLA 905 (1094)
Q Consensus 836 ~vWd~~t~---~~~~-------~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~ 905 (1094)
++|..... .... ...-+.|.-.|..+-...++.+|+|++.|.+|.+|+++...+..+....
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq--------- 228 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQ--------- 228 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeecccc---------
Confidence 99976422 1110 1111346667777877778999999999999999999953233322221
Q ss_pred ecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeE
Q 001349 906 VSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVH 985 (1094)
Q Consensus 906 ~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~ 985 (1094)
..+...+.+|+|+++++......+++|.. +-..||+++-- .....+.||...|.
T Consensus 229 ~~n~~aavSP~GRFia~~gFTpDVkVwE~---------------~f~kdG~fqev-----------~rvf~LkGH~saV~ 282 (420)
T KOG2096|consen 229 SSNYDAAVSPDGRFIAVSGFTPDVKVWEP---------------IFTKDGTFQEV-----------KRVFSLKGHQSAVL 282 (420)
T ss_pred ccccceeeCCCCcEEEEecCCCCceEEEE---------------EeccCcchhhh-----------hhhheeccchhhee
Confidence 12234458999999877777776666631 12233432211 11145789999999
Q ss_pred EEEEeCCccEEEEEECCCCEEEEEECCC-------CeEEEEec-----CCCCEEEEEEeCC-EEEEEEcCCeEEEEECCC
Q 001349 986 ALQVHNGLVYTASTSLDGAAVKMWSTSN-------YNMVGSLP-----TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKR 1052 (1094)
Q Consensus 986 sl~fs~~~~~las~s~Dg~~I~iwd~~~-------~~~~~~~~-----~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t 1052 (1094)
.++|+++...+++.+.|| +++|||+.- .+.++... .++....+..+|+ -+++.+...++++|..++
T Consensus 283 ~~aFsn~S~r~vtvSkDG-~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~ 361 (420)
T KOG2096|consen 283 AAAFSNSSTRAVTVSKDG-KWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASED 361 (420)
T ss_pred eeeeCCCcceeEEEecCC-cEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEccc
Confidence 999999999999999998 999999852 22233331 2445568999998 566667778999999999
Q ss_pred CcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1053 QIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1053 ~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
|+...++...|.+.|++++|+++|++++|++ |..++++.
T Consensus 362 g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 362 GKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred CccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 9999999889999999999999999999997 56677653
No 89
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.88 E-value=4.3e-21 Score=194.58 Aligned_cols=238 Identities=22% Similarity=0.248 Sum_probs=193.2
Q ss_pred eecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEec-CCCEEEEEeCCCcEEEEE
Q 001349 807 HVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQ-SGEMLYSGSLDKTARVWS 883 (1094)
Q Consensus 807 ~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fsp-dg~~LaSgs~DgtI~vWd 883 (1094)
....+|.+.|.+++|+-+ .+++|+.|+++.||++...+...-....+|++.|-.++|+| ....+++++.|++|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 445789999999999986 99999999999999998875444456679999999999998 678999999999999999
Q ss_pred CCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECC
Q 001349 884 IGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLA 963 (1094)
Q Consensus 884 i~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~ 963 (1094)
++.++ +......+..-.. +.|+|+|.+ +++|..|..|.+.|.+
T Consensus 94 ~r~~k--~~~~i~~~~eni~-------i~wsp~g~~----------------------------~~~~~kdD~it~id~r 136 (313)
T KOG1407|consen 94 IRSGK--CTARIETKGENIN-------ITWSPDGEY----------------------------IAVGNKDDRITFIDAR 136 (313)
T ss_pred eccCc--EEEEeeccCcceE-------EEEcCCCCE----------------------------EEEecCcccEEEEEec
Confidence 99985 3333222222222 238888875 6778888899999998
Q ss_pred CCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEE
Q 001349 964 TGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGC 1040 (1094)
Q Consensus 964 ~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs 1040 (1094)
+.+.....+ ....++.+.|+.++.++...... ++|.|.....-+++++++ |.....++.|+|+ ++++|+
T Consensus 137 ~~~~~~~~~-------~~~e~ne~~w~~~nd~Fflt~Gl-G~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~Gs 208 (313)
T KOG1407|consen 137 TYKIVNEEQ-------FKFEVNEISWNNSNDLFFLTNGL-GCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGS 208 (313)
T ss_pred ccceeehhc-------ccceeeeeeecCCCCEEEEecCC-ceEEEEeccccccccccccCCcceEEEEECCCCceEeecc
Confidence 887663322 23457778887544444444333 499999999999999998 8899999999999 999999
Q ss_pred cCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEE
Q 001349 1041 KGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQA 1090 (1094)
Q Consensus 1041 ~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~i 1090 (1094)
.|-.+.+||+...-+++.+ ..+.-+|..+.||.||++|++||+|..|-|
T Consensus 209 ADAlvSLWD~~ELiC~R~i-sRldwpVRTlSFS~dg~~lASaSEDh~IDI 257 (313)
T KOG1407|consen 209 ADALVSLWDVDELICERCI-SRLDWPVRTLSFSHDGRMLASASEDHFIDI 257 (313)
T ss_pred ccceeeccChhHhhhheee-ccccCceEEEEeccCcceeeccCccceEEe
Confidence 9999999999999999999 578889999999999999999999988754
No 90
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=4e-21 Score=198.41 Aligned_cols=290 Identities=17% Similarity=0.240 Sum_probs=220.4
Q ss_pred CcEEEEeeCCCCeEEEeCCcceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEE
Q 001349 785 MVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLA 862 (1094)
Q Consensus 785 ~~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~ 862 (1094)
..++++.-.++++.. +....+.||.+.|+.++-... .+.+++.|.+.+||.++++ .|+.++.||.+.|++|.
T Consensus 124 tsrivssFk~~t~~~----~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg--~CL~~Y~GH~GSVNsik 197 (481)
T KOG0300|consen 124 TSRIVSSFKDGTVKF----RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESG--ACLATYTGHTGSVNSIK 197 (481)
T ss_pred cchheeeecCCceeE----eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccc--cceeeecccccceeeEE
Confidence 456666666666432 345677899999999988753 8999999999999999999 89999999999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEEC------CCC--------c--eEE-----------------------EEecccCcccee
Q 001349 863 ILQSGEMLYSGSLDKTARVWSI------GNE--------E--IHC-----------------------VQVHDIKDQIQN 903 (1094)
Q Consensus 863 fspdg~~LaSgs~DgtI~vWdi------~~~--------~--~~~-----------------------~~~~~~~~~V~~ 903 (1094)
|++.+.+++++|.|++..||.. ... + ..+ .....|...|.+
T Consensus 198 fh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a 277 (481)
T KOG0300|consen 198 FHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA 277 (481)
T ss_pred eccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence 9999999999999999999972 110 0 000 001112222222
Q ss_pred eeecCceEEEeeCCCeEEEEEeCCeEEEEcCCC------------CceEEEEeC--CEEEEEEcCCeEEEEECCCCceeE
Q 001349 904 LAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSK------------YPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFAT 969 (1094)
Q Consensus 904 v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~------------~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~ 969 (1094)
.. |...|+.+++++||.+..+|+... ..+.+..++ ..+++.+.|.+.++||.+..-..
T Consensus 278 ~d-------WL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~s- 349 (481)
T KOG0300|consen 278 CD-------WLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQS- 349 (481)
T ss_pred hh-------hhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcce-
Confidence 22 667789999999999999998532 222223333 34788999999999999843221
Q ss_pred EeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCC-eEEEEecCCCCEEEEEEeCC--EEEEEEcCCeEE
Q 001349 970 IQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNY-NMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVE 1046 (1094)
Q Consensus 970 ~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~-~~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~ 1046 (1094)
...|.||...|+++.|..+... ++++.| ++|++||+++. .++.++...++++.++++.. .++.--++..|+
T Consensus 350 ----V~VFQGHtdtVTS~vF~~dd~v-VSgSDD-rTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvR 423 (481)
T KOG0300|consen 350 ----VAVFQGHTDTVTSVVFNTDDRV-VSGSDD-RTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVR 423 (481)
T ss_pred ----eeeecccccceeEEEEecCCce-eecCCC-ceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEE
Confidence 1578999999999999877654 666655 69999999975 57888888999999999876 677777888999
Q ss_pred EEECCCCcEE---EEecccCCcceEEEEEcCCC--CEEEEEeCCCcEEEEeCC
Q 001349 1047 IWDQKRQIRI---ETLQTGTSGKVQCMALDDNE--EFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1047 vwd~~t~~~~---~~l~~~h~~~I~~l~~Spdg--~~L~sgs~DG~I~iWdls 1094 (1094)
+||+...... .+-..+|...|+|++|..+. .-|++++.|..+.-|+++
T Consensus 424 lfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in 476 (481)
T KOG0300|consen 424 LFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKIN 476 (481)
T ss_pred EEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEec
Confidence 9999754422 22235899999999998654 458899999999999874
No 91
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=7.6e-20 Score=180.97 Aligned_cols=281 Identities=16% Similarity=0.142 Sum_probs=213.4
Q ss_pred ccccccccccCcEEEEeeCCCCeEEEeCCcc-----------------eeecccCCCcEEEEEEeCC--EEEEEECCCeE
Q 001349 775 LRKYSPLAFEMVKVLSNGHDSSADFWNHREL-----------------VHVDSSENGKVLSIACFRD--KIFSGHSDGTI 835 (1094)
Q Consensus 775 ~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~~-----------------~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I 835 (1094)
.++...|.+.|...+.|+...+.+|..+... -.....|.+.|+|.+|+|+ +|++|+.|.+|
T Consensus 34 airav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~i 113 (350)
T KOG0641|consen 34 AIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTI 113 (350)
T ss_pred heeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceE
Confidence 4556778888999999999999999865411 1223468999999999996 99999999999
Q ss_pred EEEecCCCcc---eeEEEecccCCCeEEEEEecC----CCEEEEEeC-CCcEEEEECCCCceEEEEecccCccceeeeec
Q 001349 836 KVWTGRGSIL---HLIQQIREHTKAVTGLAILQS----GEMLYSGSL-DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVS 907 (1094)
Q Consensus 836 ~vWd~~t~~~---~~~~~l~~H~~~V~sv~fspd----g~~LaSgs~-DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~ 907 (1094)
++--++.... -.-..+.-|.+.|..++|-.+ |.+|++++. |..|++-|..+|+. +. .+
T Consensus 114 k~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~--~~---------a~--- 179 (350)
T KOG0641|consen 114 KVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQG--FH---------AL--- 179 (350)
T ss_pred EEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCc--ce---------ee---
Confidence 9976543211 123456779999999999653 567777664 66677767666541 11 10
Q ss_pred CceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecC-CCCCeEE
Q 001349 908 NSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLG-KANPVHA 986 (1094)
Q Consensus 908 ~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~-h~~~V~s 986 (1094)
--..|..++..+|+| -.+++|+.|.+|++||++-..++.+......-.| ....|.+
T Consensus 180 -----sghtghilalyswn~------------------~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaa 236 (350)
T KOG0641|consen 180 -----SGHTGHILALYSWNG------------------AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAA 236 (350)
T ss_pred -----cCCcccEEEEEEecC------------------cEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEE
Confidence 011233334444443 3589999999999999999888866553322222 2367999
Q ss_pred EEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCC----cEEEEe
Q 001349 987 LQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQ----IRIETL 1059 (1094)
Q Consensus 987 l~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~----~~~~~l 1059 (1094)
++..|.+.+++++..|. ...+||++.+.+++.|. |...|.++.|+|. ++.+++.|..|++-|+... -++...
T Consensus 237 v~vdpsgrll~sg~~ds-sc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv 315 (350)
T KOG0641|consen 237 VAVDPSGRLLASGHADS-SCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVV 315 (350)
T ss_pred EEECCCcceeeeccCCC-ceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEE
Confidence 99999999999998885 89999999999999987 8899999999998 8999999999999998642 123333
Q ss_pred cccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1060 QTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1060 ~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
..|...+..+.|+|..-.+++.+.|.++.+|-++
T Consensus 316 -~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 316 -AEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred -EeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 4688899999999999889999999999999764
No 92
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.88 E-value=2.2e-21 Score=211.23 Aligned_cols=248 Identities=19% Similarity=0.236 Sum_probs=190.3
Q ss_pred ccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCc--------ceeEEEecccCCCeEEEEEec-CCCEEEEEeCCC
Q 001349 810 SSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSI--------LHLIQQIREHTKAVTGLAILQ-SGEMLYSGSLDK 877 (1094)
Q Consensus 810 ~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~--------~~~~~~l~~H~~~V~sv~fsp-dg~~LaSgs~Dg 877 (1094)
..|.+.|+.+.+-|. .+++++..+.|.|||..+.. ..+-..+.+|++.-.+++|++ ..-.|++|+.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 468999999999884 89999999999999987532 123347889999888999998 455899999999
Q ss_pred cEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC---CEEEEEEcC
Q 001349 878 TARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ---GKVYCGCQD 954 (1094)
Q Consensus 878 tI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~---~~l~sgs~D 954 (1094)
+|++||+...... .++. .....+-.|...|..++|++ +.+.+++.|
T Consensus 201 ~i~lwdi~~~~~~--------~~~~-----------------------~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd 249 (422)
T KOG0264|consen 201 TICLWDINAESKE--------DKVV-----------------------DPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDD 249 (422)
T ss_pred cEEEEeccccccC--------Cccc-----------------------cceEEeecCCcceehhhccccchhhheeecCC
Confidence 9999999874310 0000 00111122344455555543 458899999
Q ss_pred CeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeC-CccEEEEEECCCCEEEEEECCCC-eEEEEec-CCCCEEEEEE
Q 001349 955 GAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN-GLVYTASTSLDGAAVKMWSTSNY-NMVGSLP-TLSEVRAMVV 1031 (1094)
Q Consensus 955 g~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~-~~~~las~s~Dg~~I~iwd~~~~-~~~~~~~-~~~~v~~l~~ 1031 (1094)
+.+.+||+++++. .......+|.+.|+|++|+| ++..+|+++.|+ +|.+||+++. +++.++. |...|..+.|
T Consensus 250 ~~L~iwD~R~~~~----~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~-tV~LwDlRnL~~~lh~~e~H~dev~~V~W 324 (422)
T KOG0264|consen 250 GKLMIWDTRSNTS----KPSHSVKAHSAEVNCVAFNPFNEFILATGSADK-TVALWDLRNLNKPLHTFEGHEDEVFQVEW 324 (422)
T ss_pred CeEEEEEcCCCCC----CCcccccccCCceeEEEeCCCCCceEEeccCCC-cEEEeechhcccCceeccCCCcceEEEEe
Confidence 9999999997421 12256788999999999986 567788888886 9999999974 4666776 7899999999
Q ss_pred eCC---EEEEEEcCCeEEEEECCCC--------------cEEEEecccCCcceEEEEEcCCCCE-EEEEeCCCcEEEEeC
Q 001349 1032 SSE---LVYLGCKGGTVEIWDQKRQ--------------IRIETLQTGTSGKVQCMALDDNEEF-LVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1032 spd---~l~sgs~dg~I~vwd~~t~--------------~~~~~l~~~h~~~I~~l~~Spdg~~-L~sgs~DG~I~iWdl 1093 (1094)
+|+ .+++++.|+.+.|||+..- +++... .||...|..+.|+|+..+ |++++.|+.++||+.
T Consensus 325 SPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~H-gGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 325 SPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIH-GGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQM 403 (422)
T ss_pred CCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEe-cCcccccccccCCCCCCeEEEEecCCceEEEeec
Confidence 998 7999999999999998642 133444 799999999999998865 678899999999986
Q ss_pred C
Q 001349 1094 S 1094 (1094)
Q Consensus 1094 s 1094 (1094)
+
T Consensus 404 s 404 (422)
T KOG0264|consen 404 A 404 (422)
T ss_pred c
Confidence 3
No 93
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=2.6e-21 Score=206.67 Aligned_cols=245 Identities=15% Similarity=0.277 Sum_probs=199.8
Q ss_pred ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCC-CcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 001349 805 LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRG-SILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARV 881 (1094)
Q Consensus 805 ~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t-~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~v 881 (1094)
..+++..|++.|+-+.||++ +|||++.|.+..+|++.. ...+..+++.+|..+|.-+.||||.++|++++.|..+++
T Consensus 216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l 295 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL 295 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence 45678899999999999997 999999999999998753 335678899999999999999999999999999999999
Q ss_pred EECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEE
Q 001349 882 WSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEID 961 (1094)
Q Consensus 882 Wdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwD 961 (1094)
||+.+|.........+...+.+.+ |.|||.. +++|+.|++|..||
T Consensus 296 wDv~tgd~~~~y~~~~~~S~~sc~-------W~pDg~~----------------------------~V~Gs~dr~i~~wd 340 (519)
T KOG0293|consen 296 WDVDTGDLRHLYPSGLGFSVSSCA-------WCPDGFR----------------------------FVTGSPDRTIIMWD 340 (519)
T ss_pred ccCCcchhhhhcccCcCCCcceeE-------EccCCce----------------------------eEecCCCCcEEEec
Confidence 999999755444444444444444 8888874 78899999999999
Q ss_pred CCCCceeEEeccceeecCC-CCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEE
Q 001349 962 LATGTFATIQTGHRKLLGK-ANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYL 1038 (1094)
Q Consensus 962 l~~~~~~~~~~~~~~~~~h-~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~s 1038 (1094)
+.... .. .+.+- ...|.+++..+||.++.+...|. .|++++..+......+....+|+++.+|.| ++.+
T Consensus 341 lDgn~-~~------~W~gvr~~~v~dlait~Dgk~vl~v~~d~-~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~Lv 412 (519)
T KOG0293|consen 341 LDGNI-LG------NWEGVRDPKVHDLAITYDGKYVLLVTVDK-KIRLYNREARVDRGLISEEQPITSFSISKDGKLALV 412 (519)
T ss_pred CCcch-hh------cccccccceeEEEEEcCCCcEEEEEeccc-ceeeechhhhhhhccccccCceeEEEEcCCCcEEEE
Confidence 87443 32 22221 24699999999999999988885 999999988777767777889999999998 6777
Q ss_pred EEcCCeEEEEECCCCcEEEEecccCCc--ceEEEEEcC-CCCEEEEEeCCCcEEEEeC
Q 001349 1039 GCKGGTVEIWDQKRQIRIETLQTGTSG--KVQCMALDD-NEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1039 gs~dg~I~vwd~~t~~~~~~l~~~h~~--~I~~l~~Sp-dg~~L~sgs~DG~I~iWdl 1093 (1094)
.-.+..|++||+...+.+..+ .||.. .|..-+|-- +..++++||+|+.|+||+.
T Consensus 413 nL~~qei~LWDl~e~~lv~kY-~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr 469 (519)
T KOG0293|consen 413 NLQDQEIHLWDLEENKLVRKY-FGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHR 469 (519)
T ss_pred EcccCeeEEeecchhhHHHHh-hcccccceEEEeccCCCCcceEEecCCCceEEEEEc
Confidence 778999999999988888888 47765 455556643 4489999999999999984
No 94
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=1.2e-20 Score=195.20 Aligned_cols=261 Identities=16% Similarity=0.215 Sum_probs=195.1
Q ss_pred cccccccc-cCcEEEEeeCCCCeEEEeCCc----ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeE
Q 001349 776 RKYSPLAF-EMVKVLSNGHDSSADFWNHRE----LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLI 848 (1094)
Q Consensus 776 ~~~~~~~~-d~~~l~s~s~dg~I~vWd~~~----~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~ 848 (1094)
+....|++ ....++.+|.||+||+|++.. .-.....|.++|.+++|+.| .+++|+.|+.+++||+.++ .+
T Consensus 30 IS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~---Q~ 106 (347)
T KOG0647|consen 30 ISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG---QV 106 (347)
T ss_pred hheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC---Ce
Confidence 33445555 345677999999999999873 22445679999999999987 9999999999999999998 56
Q ss_pred EEecccCCCeEEEEEecCCC--EEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeC
Q 001349 849 QQIREHTKAVTGLAILQSGE--MLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRN 926 (1094)
Q Consensus 849 ~~l~~H~~~V~sv~fspdg~--~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~ 926 (1094)
..+..|.++|.++.|-+... .|+|||.|+||+.||++.. ..+.....++.++++.+-.....+...++.|++....
T Consensus 107 ~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~--~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~ 184 (347)
T KOG0647|consen 107 SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS--NPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLE 184 (347)
T ss_pred eeeeecccceeEEEEecCCCcceeEecccccceeecccCCC--CeeeeeeccceeeehhccCceeEEEecCCcEEEEEcC
Confidence 67788999999999988655 8999999999999999976 4455555677788877666666566666665555543
Q ss_pred CeEEEEc-----CCCCceEEEEeC--CEEEEEEcCCeEEEEECCCC--ceeEEeccceeec---CCCCCeEEEEEeCCcc
Q 001349 927 GKTKLLN-----SSKYPKCLALVQ--GKVYCGCQDGAIQEIDLATG--TFATIQTGHRKLL---GKANPVHALQVHNGLV 994 (1094)
Q Consensus 927 g~i~l~~-----~~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~--~~~~~~~~~~~~~---~h~~~V~sl~fs~~~~ 994 (1094)
+....+. .+-.++|++... +..+.|+..|.+.+..+..+ +.-..+..++.-. +.-..|++++|+|...
T Consensus 185 n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg 264 (347)
T KOG0647|consen 185 NPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG 264 (347)
T ss_pred CCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccc
Confidence 3222222 123578887753 34799999999999888876 3334444444321 1124688999999999
Q ss_pred EEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC---EEEEEEcC
Q 001349 995 YTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE---LVYLGCKG 1042 (1094)
Q Consensus 995 ~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd---~l~sgs~d 1042 (1094)
.+++.+.|| ++.+||-.....+.+.. +..+|++..|+.+ +.++.+.|
T Consensus 265 tlvTaGsDG-tf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 265 TLVTAGSDG-TFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred eEEEecCCc-eEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecc
Confidence 999999997 99999998777777655 8899999999887 34444444
No 95
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=8.2e-21 Score=206.32 Aligned_cols=271 Identities=18% Similarity=0.285 Sum_probs=208.6
Q ss_pred HhhhccccccccccCcEEEEeeCCCCeEEEeCCcce-------------------eec-ccCCCcEEEEEEeCC--EEEE
Q 001349 771 GLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRELV-------------------HVD-SSENGKVLSIACFRD--KIFS 828 (1094)
Q Consensus 771 ~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~~~-------------------~~~-~~h~~~V~~l~fspd--~LaS 828 (1094)
.|+...-...+.++..+.++++.+|+|.-|+..+.. ..- .+|...|.+++.++| +|++
T Consensus 140 ~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylat 219 (479)
T KOG0299|consen 140 KHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLAT 219 (479)
T ss_pred cccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEe
Confidence 344455567788899999999999999999865211 011 378899999999998 9999
Q ss_pred EECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecC
Q 001349 829 GHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSN 908 (1094)
Q Consensus 829 gs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~ 908 (1094)
|+.|..|.||+..+. ..++.+.+|.+.|.+++|-.....++++|.|++|++|+++... .....+.|.+.|.++.
T Consensus 220 gg~d~~v~Iw~~~t~--ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s-~vetlyGHqd~v~~Id--- 293 (479)
T KOG0299|consen 220 GGRDRHVQIWDCDTL--EHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS-YVETLYGHQDGVLGID--- 293 (479)
T ss_pred cCCCceEEEecCccc--chhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH-HHHHHhCCccceeeec---
Confidence 999999999999999 7889999999999999999888899999999999999998743 1112234444444443
Q ss_pred ceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCE-EEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEE
Q 001349 909 SILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGK-VYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHAL 987 (1094)
Q Consensus 909 ~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~-l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl 987 (1094)
... -.+ +-+|+.|+++++|++..... ..+.+|.+.+.|+
T Consensus 294 ----aL~-----------------------------reR~vtVGgrDrT~rlwKi~eesq-------lifrg~~~sidcv 333 (479)
T KOG0299|consen 294 ----ALS-----------------------------RERCVTVGGRDRTVRLWKIPEESQ-------LIFRGGEGSIDCV 333 (479)
T ss_pred ----hhc-----------------------------ccceEEeccccceeEEEeccccce-------eeeeCCCCCeeeE
Confidence 111 123 44566999999999954443 3566788899999
Q ss_pred EEeCCccEEEEEECCCCEEEEEECCCCeEEEEec--C-----------CCCEEEEEEeCC--EEEEEEcCCeEEEEECCC
Q 001349 988 QVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP--T-----------LSEVRAMVVSSE--LVYLGCKGGTVEIWDQKR 1052 (1094)
Q Consensus 988 ~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~--~-----------~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t 1052 (1094)
+|-++.. +++|+.+| .|.+|++.+.+++.+.. | +.+|++++..|. ++++|+.+|.|++|-+..
T Consensus 334 ~~In~~H-fvsGSdnG-~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~ 411 (479)
T KOG0299|consen 334 AFINDEH-FVSGSDNG-SIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIED 411 (479)
T ss_pred EEecccc-eeeccCCc-eEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecC
Confidence 9976654 57888786 99999999988887765 3 127899999876 999999999999999988
Q ss_pred C----cEEEEecccCCcceEEEEEcCCCCEEEEE-eCCCcEEEE
Q 001349 1053 Q----IRIETLQTGTSGKVQCMALDDNEEFLVIG-TSDGRIQAW 1091 (1094)
Q Consensus 1053 ~----~~~~~l~~~h~~~I~~l~~Spdg~~L~sg-s~DG~I~iW 1091 (1094)
+ +++..+. -.+.|++++|+++|+++++| +....+-=|
T Consensus 412 g~r~i~~l~~ls--~~GfVNsl~f~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 412 GLRAINLLYSLS--LVGFVNSLAFSNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred Cccccceeeecc--cccEEEEEEEccCCCEEEEeccccccccee
Confidence 7 4555553 56799999999999977665 333344333
No 96
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=8.5e-21 Score=206.21 Aligned_cols=243 Identities=17% Similarity=0.317 Sum_probs=197.0
Q ss_pred eecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcce--e-------------EEEe-cccCCCeEEEEEecCCC
Q 001349 807 HVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILH--L-------------IQQI-REHTKAVTGLAILQSGE 868 (1094)
Q Consensus 807 ~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~--~-------------~~~l-~~H~~~V~sv~fspdg~ 868 (1094)
.....|.-+|.+++++|+ +.++++.||+|.-|++.++... . ...- ++|.+.|.+++.|+||+
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 456689999999999997 9999999999999999887311 0 0111 37888999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC--C
Q 001349 869 MLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ--G 946 (1094)
Q Consensus 869 ~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~--~ 946 (1094)
+|++|+.|..|.||+.++.+. ......|.+.|. +++|.. +
T Consensus 216 ylatgg~d~~v~Iw~~~t~eh-v~~~~ghr~~V~-------------------------------------~L~fr~gt~ 257 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEH-VKVFKGHRGAVS-------------------------------------SLAFRKGTS 257 (479)
T ss_pred EEEecCCCceEEEecCcccch-hhccccccccee-------------------------------------eeeeecCcc
Confidence 999999999999999999741 111233344444 444432 4
Q ss_pred EEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCCCE
Q 001349 947 KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEV 1026 (1094)
Q Consensus 947 ~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v 1026 (1094)
.+++++.|++|++|++.....+ .++.||.+.|..+....-...+..++.| +++++|++..-..+....+.+.+
T Consensus 258 ~lys~s~Drsvkvw~~~~~s~v------etlyGHqd~v~~IdaL~reR~vtVGgrD-rT~rlwKi~eesqlifrg~~~si 330 (479)
T KOG0299|consen 258 ELYSASADRSVKVWSIDQLSYV------ETLYGHQDGVLGIDALSRERCVTVGGRD-RTVRLWKIPEESQLIFRGGEGSI 330 (479)
T ss_pred ceeeeecCCceEEEehhHhHHH------HHHhCCccceeeechhcccceEEecccc-ceeEEEeccccceeeeeCCCCCe
Confidence 5999999999999999887776 6788999999999998777777777788 49999999655444444477789
Q ss_pred EEEEEeCC-EEEEEEcCCeEEEEECCCCcEEEEecccCC-----------cceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1027 RAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQTGTS-----------GKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1027 ~~l~~spd-~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~-----------~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
.+++|-.+ .+++||.+|.|.+|++.+.+++.+....|. .+|++++..|..+++++|+.+|.|++|.++
T Consensus 331 dcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~ 410 (479)
T KOG0299|consen 331 DCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIE 410 (479)
T ss_pred eeEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEec
Confidence 99998776 999999999999999999999888765552 279999999999999999999999999863
No 97
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.87 E-value=1.7e-20 Score=201.92 Aligned_cols=236 Identities=19% Similarity=0.355 Sum_probs=200.7
Q ss_pred CcEEEEEEeC--CEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEE
Q 001349 814 GKVLSIACFR--DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHC 891 (1094)
Q Consensus 814 ~~V~~l~fsp--d~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~ 891 (1094)
..+.++...+ +.+.+|+.|.++.++|...+ +.+.+++||+..|+.+.|+|+...+++++.|..|+||...... ..
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~--q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s-~~ 296 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSN--QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS-EP 296 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchh--hhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc-Cc
Confidence 4566666666 58999999999999999998 7899999999999999999999999999999999999987754 33
Q ss_pred EEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEe
Q 001349 892 VQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQ 971 (1094)
Q Consensus 892 ~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~ 971 (1094)
.....|..+|+.+. ..|.|.+ +++++.||+..+.|+++|..+...
T Consensus 297 ~~~~~h~~~V~~ls-------~h~tgeY----------------------------llsAs~d~~w~Fsd~~~g~~lt~v 341 (506)
T KOG0289|consen 297 TSSRPHEEPVTGLS-------LHPTGEY----------------------------LLSASNDGTWAFSDISSGSQLTVV 341 (506)
T ss_pred cccccccccceeee-------eccCCcE----------------------------EEEecCCceEEEEEccCCcEEEEE
Confidence 34445677787776 6666664 788899999999999999887432
Q ss_pred ccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEE
Q 001349 972 TGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIW 1048 (1094)
Q Consensus 972 ~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vw 1048 (1094)
.. ....-.+++.+|||||.++++|..|| .|+|||+.++..+..|. |.++|..++|+.+ +++++++|+.|++|
T Consensus 342 s~----~~s~v~~ts~~fHpDgLifgtgt~d~-~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lw 416 (506)
T KOG0289|consen 342 SD----ETSDVEYTSAAFHPDGLIFGTGTPDG-VVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLW 416 (506)
T ss_pred ee----ccccceeEEeeEcCCceEEeccCCCc-eEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEE
Confidence 21 12234589999999999999999997 99999999999888998 7899999999999 79999999999999
Q ss_pred ECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1049 DQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1049 d~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
|++..+.+.++.......|.++.|.+.|.+|+.++.|=+|++++
T Consensus 417 DLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 417 DLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred EehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence 99998888888655555799999999999999998887777664
No 98
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.86 E-value=1.3e-21 Score=209.70 Aligned_cols=244 Identities=18% Similarity=0.329 Sum_probs=196.0
Q ss_pred cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 001349 804 ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARV 881 (1094)
Q Consensus 804 ~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~v 881 (1094)
.....+..|.+.|..+.|-++ .|++|+.|..|++|++..++...+.++.|..+.|+++.|.++++++++++.|+.+++
T Consensus 166 ~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~ 245 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRL 245 (459)
T ss_pred hhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceee
Confidence 345567789999999999885 999999999999999998866688899999999999999999999999999999999
Q ss_pred EECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEE
Q 001349 882 WSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEID 961 (1094)
Q Consensus 882 Wdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwD 961 (1094)
|+++........ ..|.+.|.++. |... ...+++|+.|.+|+.||
T Consensus 246 Wnvd~~r~~~TL-sGHtdkVt~ak-------~~~~----------------------------~~~vVsgs~DRtiK~WD 289 (459)
T KOG0288|consen 246 WNVDSLRLRHTL-SGHTDKVTAAK-------FKLS----------------------------HSRVVSGSADRTIKLWD 289 (459)
T ss_pred eeccchhhhhhh-cccccceeeeh-------hhcc----------------------------ccceeeccccchhhhhh
Confidence 999987522211 12455555554 2111 12388999999999999
Q ss_pred CCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEE
Q 001349 962 LATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLG 1039 (1094)
Q Consensus 962 l~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sg 1039 (1094)
+....+.... +. ...+..|... ...++++..|+ .|++||.++..+....+.++.|+++..+++ .+.+.
T Consensus 290 l~k~~C~kt~-----l~--~S~cnDI~~~--~~~~~SgH~Dk-kvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLss 359 (459)
T KOG0288|consen 290 LQKAYCSKTV-----LP--GSQCNDIVCS--ISDVISGHFDK-KVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSS 359 (459)
T ss_pred hhhhheeccc-----cc--cccccceEec--ceeeeeccccc-ceEEEeccCCceeeEeecCcceeeEeeccCCeEEeee
Confidence 9987776321 11 1344455544 45567777775 899999999999999998889999999998 67788
Q ss_pred EcCCeEEEEECCCCcEEEEeccc---CCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1040 CKGGTVEIWDQKRQIRIETLQTG---TSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1040 s~dg~I~vwd~~t~~~~~~l~~~---h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
+.|.++.+.|+++......+... -....+.+.|||++.|+++||.||.|+||++
T Consensus 360 sRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v 416 (459)
T KOG0288|consen 360 SRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSV 416 (459)
T ss_pred cCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEc
Confidence 99999999999998887776311 1124899999999999999999999999987
No 99
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.86 E-value=1.3e-19 Score=208.83 Aligned_cols=296 Identities=17% Similarity=0.244 Sum_probs=231.7
Q ss_pred CcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcceeEEEec-ccCCCe
Q 001349 785 MVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIR-EHTKAV 858 (1094)
Q Consensus 785 ~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~~~~l~-~H~~~V 858 (1094)
-..++.|..+|+|.++|++ +.+..+....+.|++++|..| .+++|+..|.+.+||++.. +.+..+. .|.+.|
T Consensus 214 LDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~k--kl~~v~~nah~~sv 291 (910)
T KOG1539|consen 214 LDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKK--KLINVTRNAHYGSV 291 (910)
T ss_pred ceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCC--eeeeeeeccccCCc
Confidence 4578999999999999998 444444444699999999965 9999999999999999988 4555444 899999
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCCce--EEEEe-cccCc------------------------------------
Q 001349 859 TGLAILQSGEMLYSGSLDKTARVWSIGNEEI--HCVQV-HDIKD------------------------------------ 899 (1094)
Q Consensus 859 ~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~--~~~~~-~~~~~------------------------------------ 899 (1094)
....|.|....++|++.|+.+++|=.+++.. +.+.. ..|..
T Consensus 292 ~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~ 371 (910)
T KOG1539|consen 292 TGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQ 371 (910)
T ss_pred ccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhH
Confidence 9999999999999999999999986553220 00000 00000
Q ss_pred -------------------------cceeeeec------------------------------------C----------
Q 001349 900 -------------------------QIQNLAVS------------------------------------N---------- 908 (1094)
Q Consensus 900 -------------------------~V~~v~~~------------------------------------~---------- 908 (1094)
+|..+++. +
T Consensus 372 ~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~ 451 (910)
T KOG1539|consen 372 ELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINA 451 (910)
T ss_pred hhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcce
Confidence 11111100 0
Q ss_pred ceEEEeeCCCeEEEEEeCCeEEEEcC---------------CCCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEe
Q 001349 909 SILCFIPQGAGIKVHLRNGKTKLLNS---------------SKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQ 971 (1094)
Q Consensus 909 ~~~~fspdg~~l~~~~~~g~i~l~~~---------------~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~ 971 (1094)
..++.++.|+..+++...|.+..++. .+.|..++.+. ..+++++.+|.+.+||..+...+...
T Consensus 452 ~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l 531 (910)
T KOG1539|consen 452 TAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSL 531 (910)
T ss_pred EEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeee
Confidence 04567888999999999999998874 34577777764 34899999999999999988755322
Q ss_pred ccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEE
Q 001349 972 TGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIW 1048 (1094)
Q Consensus 972 ~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vw 1048 (1094)
. -...+..+..+.....++.+..| -.|+++|+.+.+.++.|. |+..|+.++|||| ++++++.|++|++|
T Consensus 532 ~-------l~~~~~~iv~hr~s~l~a~~~dd-f~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~w 603 (910)
T KOG1539|consen 532 R-------LGSSITGIVYHRVSDLLAIALDD-FSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTW 603 (910)
T ss_pred c-------cCCCcceeeeeehhhhhhhhcCc-eeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEE
Confidence 1 23467888888776676766655 599999999999999998 8899999999999 89999999999999
Q ss_pred ECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCC-CcEEEEe
Q 001349 1049 DQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSD-GRIQAWG 1092 (1094)
Q Consensus 1049 d~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~D-G~I~iWd 1092 (1094)
|+.++.++..+. -..+++++.|||+|.+|+|+..| .-|++|.
T Consensus 604 Dlpt~~lID~~~--vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 604 DLPTGTLIDGLL--VDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred eccCcceeeeEe--cCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 999999999884 56689999999999999999998 5699994
No 100
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.86 E-value=1.1e-20 Score=195.02 Aligned_cols=246 Identities=17% Similarity=0.303 Sum_probs=192.9
Q ss_pred eecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCC------------C----cceeEEEecccCCCeEEEEEecCCC
Q 001349 807 HVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRG------------S----ILHLIQQIREHTKAVTGLAILQSGE 868 (1094)
Q Consensus 807 ~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t------------~----~~~~~~~l~~H~~~V~sv~fspdg~ 868 (1094)
..+..|.+++.+.+|++| ++++|+.|..|+|.|+.. + .-..++++..|.+.|+++.|+|...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 346689999999999998 999999999999999861 1 1146789999999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCc-eEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCE
Q 001349 869 MLYSGSLDKTARVWSIGNEE-IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGK 947 (1094)
Q Consensus 869 ~LaSgs~DgtI~vWdi~~~~-~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~ 947 (1094)
.|++|+.|++|+++|+.... .+....+....+|.++. |.|.|.+
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiS-------fHPsGef---------------------------- 230 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSIS-------FHPSGEF---------------------------- 230 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEe-------ecCCCce----------------------------
Confidence 99999999999999997643 22233344455677776 7777764
Q ss_pred EEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec--C-CC
Q 001349 948 VYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP--T-LS 1024 (1094)
Q Consensus 948 l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~--~-~~ 1024 (1094)
+++|....++++||+.+-++..... .-..|.+.|+++.+++.+.+.++++.|| .|++||--+++++.++. | +.
T Consensus 231 llvgTdHp~~rlYdv~T~Qcfvsan---Pd~qht~ai~~V~Ys~t~~lYvTaSkDG-~IklwDGVS~rCv~t~~~AH~gs 306 (430)
T KOG0640|consen 231 LLVGTDHPTLRLYDVNTYQCFVSAN---PDDQHTGAITQVRYSSTGSLYVTASKDG-AIKLWDGVSNRCVRTIGNAHGGS 306 (430)
T ss_pred EEEecCCCceeEEeccceeEeeecC---cccccccceeEEEecCCccEEEEeccCC-cEEeeccccHHHHHHHHhhcCCc
Confidence 6777888899999999888764332 3467999999999999999999999998 99999999999999987 3 57
Q ss_pred CEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccC--Cc---ceEEEEEcCCCCEEEEEeC-CCcEEEEe
Q 001349 1025 EVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGT--SG---KVQCMALDDNEEFLVIGTS-DGRIQAWG 1092 (1094)
Q Consensus 1025 ~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h--~~---~I~~l~~Spdg~~L~sgs~-DG~I~iWd 1092 (1094)
.|.+..|..+ ++.+.+.|..+++|.+.++.++..+. |. .+ .-+...|+....+++.-.+ .+.+.-||
T Consensus 307 evcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Yt-GAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWd 381 (430)
T KOG0640|consen 307 EVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYT-GAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWD 381 (430)
T ss_pred eeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEe-cCCcccchhhhhhhhhcCccceEEccccccCceeecc
Confidence 7999999887 89999999999999999999998884 32 11 1233445555555443322 23445554
No 101
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=5.4e-21 Score=214.79 Aligned_cols=231 Identities=23% Similarity=0.378 Sum_probs=189.9
Q ss_pred EEEEEECCCeEEEEecCCCcc----eeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCcc
Q 001349 825 KIFSGHSDGTIKVWTGRGSIL----HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQ 900 (1094)
Q Consensus 825 ~LaSgs~Dg~I~vWd~~t~~~----~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~ 900 (1094)
+|+||+.||+|++|++....- ..+..++.|.++|+.+....+|+.|+|+|.|-+|++|+...+...|...
T Consensus 39 yLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~st------ 112 (735)
T KOG0308|consen 39 YLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMST------ 112 (735)
T ss_pred eEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhh------
Confidence 799999999999999875421 2477889999999999999999999999999999999988753111111
Q ss_pred ceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEE-e--CCEEEEEEcCCeEEEEECCCCce--eEEecc--
Q 001349 901 IQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLAL-V--QGKVYCGCQDGAIQEIDLATGTF--ATIQTG-- 973 (1094)
Q Consensus 901 V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~-s--~~~l~sgs~Dg~I~iwDl~~~~~--~~~~~~-- 973 (1094)
+-.|..+|.|+++ . ...+++|+-|+.|.+||+.++.. +..+..
T Consensus 113 ------------------------------ir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t 162 (735)
T KOG0308|consen 113 ------------------------------IRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVT 162 (735)
T ss_pred ------------------------------hhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccc
Confidence 1134455666665 2 23589999999999999998843 221111
Q ss_pred ceee-cCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEE
Q 001349 974 HRKL-LGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWD 1049 (1094)
Q Consensus 974 ~~~~-~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd 1049 (1094)
...+ .|+..+|++++.++.+..+++|+..+ .+++||.++++.+..+. |..+|..+.+++| .++++|.||+|++||
T Consensus 163 ~~sl~sG~k~siYSLA~N~t~t~ivsGgtek-~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWd 241 (735)
T KOG0308|consen 163 VNSLGSGPKDSIYSLAMNQTGTIIVSGGTEK-DLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWD 241 (735)
T ss_pred cccCCCCCccceeeeecCCcceEEEecCccc-ceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeee
Confidence 0122 38889999999999999999999885 99999999999888888 7899999999998 799999999999999
Q ss_pred CCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1050 QKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1050 ~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
+...+++.++ ..|...|+++..+|+-..+++|+.||.|..=|+
T Consensus 242 LgqQrCl~T~-~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl 284 (735)
T KOG0308|consen 242 LGQQRCLATY-IVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDL 284 (735)
T ss_pred ccccceeeeE-EeccCceEEEeeCCCcceEEecCCCCcEEeccc
Confidence 9999999999 589989999999999999999999999887554
No 102
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.85 E-value=6.1e-20 Score=207.81 Aligned_cols=316 Identities=15% Similarity=0.262 Sum_probs=240.3
Q ss_pred HHhhhccccccccc---cCcEEEEeeCCCCeEEEeCC--c---------------------ce----------eecccCC
Q 001349 770 KGLRELRKYSPLAF---EMVKVLSNGHDSSADFWNHR--E---------------------LV----------HVDSSEN 813 (1094)
Q Consensus 770 ~~~~~~~~~~~~~~---d~~~l~s~s~dg~I~vWd~~--~---------------------~~----------~~~~~h~ 813 (1094)
++|...++...|.. +..+++++|.|..||||.+. . .. ..+.||+
T Consensus 188 ~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHe 267 (764)
T KOG1063|consen 188 EGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHE 267 (764)
T ss_pred eccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcc
Confidence 45555555444443 44589999999999999653 0 00 2345899
Q ss_pred CcEEEEEEeCC--EEEEEECCCeEEEEecCC--CcceeEEE---ecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 001349 814 GKVLSIACFRD--KIFSGHSDGTIKVWTGRG--SILHLIQQ---IREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGN 886 (1094)
Q Consensus 814 ~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t--~~~~~~~~---l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~ 886 (1094)
+.|+++.|+|. .|.|++.|.++.+|...+ |-+..... ..+..+..+..-|+|+++.+++-+.-|-.++|....
T Consensus 268 DWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d 347 (764)
T KOG1063|consen 268 DWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKD 347 (764)
T ss_pred cceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccC
Confidence 99999999997 899999999999997654 43433333 334456789999999999999999999999999433
Q ss_pred Cc--eEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC----------------CCCceEEEEeC-C-
Q 001349 887 EE--IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS----------------SKYPKCLALVQ-G- 946 (1094)
Q Consensus 887 ~~--~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~----------------~~~v~~l~~s~-~- 946 (1094)
.. ........|-..|.++. |.|.|.++.+.+.|.+.++|.. +-..+|+++-+ +
T Consensus 348 ~~~w~~~~~iSGH~~~V~dv~-------W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~ 420 (764)
T KOG1063|consen 348 KTFWTQEPVISGHVDGVKDVD-------WDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDL 420 (764)
T ss_pred ccceeeccccccccccceeee-------ecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCc
Confidence 22 12222345677888888 9999999999999988888753 23478888876 3
Q ss_pred EEEEEEcCCeEEEEECCC-------------------------------------------Cce----eEE---------
Q 001349 947 KVYCGCQDGAIQEIDLAT-------------------------------------------GTF----ATI--------- 970 (1094)
Q Consensus 947 ~l~sgs~Dg~I~iwDl~~-------------------------------------------~~~----~~~--------- 970 (1094)
++++|.....+++|+... |.. ...
T Consensus 421 ~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L 500 (764)
T KOG1063|consen 421 QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCEL 500 (764)
T ss_pred eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhc
Confidence 477777778888887621 000 000
Q ss_pred --------------eccceeecCCCCCeEEEEEeCCccEEEEEECCC----CEEEEEECCCCeEEEEec-CCCCEEEEEE
Q 001349 971 --------------QTGHRKLLGKANPVHALQVHNGLVYTASTSLDG----AAVKMWSTSNYNMVGSLP-TLSEVRAMVV 1031 (1094)
Q Consensus 971 --------------~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg----~~I~iwd~~~~~~~~~~~-~~~~v~~l~~ 1031 (1094)
++-..++.||...|++++.+|++.+++++.... ..|++|++.+...++.+. |.-.|+.++|
T Consensus 501 ~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~F 580 (764)
T KOG1063|consen 501 TEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAF 580 (764)
T ss_pred cCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEE
Confidence 011125779999999999999999999986432 379999999998888777 7788999999
Q ss_pred eCC--EEEEEEcCCeEEEEECCCCc----EEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1032 SSE--LVYLGCKGGTVEIWDQKRQI----RIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1032 spd--~l~sgs~dg~I~vwd~~t~~----~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
||| +|++.|.|.++.+|...... ..... ..|..-|++..|+||+.+++|+|.|.+|++|..
T Consensus 581 Spdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~-k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~ 647 (764)
T KOG1063|consen 581 SPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACL-KAHTRIIWDCSWSPDEKYFATASRDKKVKVWEE 647 (764)
T ss_pred CCCCcEEEEeecCceEEeeeeecccchhhhhccc-cccceEEEEcccCcccceeEEecCCceEEEEec
Confidence 999 99999999999999875432 12223 479999999999999999999999999999975
No 103
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=6.7e-21 Score=217.97 Aligned_cols=232 Identities=21% Similarity=0.300 Sum_probs=183.5
Q ss_pred EEEEEEeC---CEEEEEECCCeEEEEecCC-CcceeEEEecccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCceE
Q 001349 816 VLSIACFR---DKIFSGHSDGTIKVWTGRG-SILHLIQQIREHTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEEIH 890 (1094)
Q Consensus 816 V~~l~fsp---d~LaSgs~Dg~I~vWd~~t-~~~~~~~~l~~H~~~V~sv~fsp-dg~~LaSgs~DgtI~vWdi~~~~~~ 890 (1094)
+..|.|+. ++|||++..|.|.+||+.. .+.+.+..|.+|+..|++++|++ ...+|+|||.||+|++||++..+-.
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~ 169 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK 169 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc
Confidence 34566764 4999999999999999986 11267778999999999999998 5789999999999999999886411
Q ss_pred EEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEE
Q 001349 891 CVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATI 970 (1094)
Q Consensus 891 ~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~ 970 (1094)
.......+.|..+. |+|.- ++.++++...|.+++||++....-.
T Consensus 170 -~t~~~nSESiRDV~-------fsp~~---------------------------~~~F~s~~dsG~lqlWDlRqp~r~~- 213 (839)
T KOG0269|consen 170 -STFRSNSESIRDVK-------FSPGY---------------------------GNKFASIHDSGYLQLWDLRQPDRCE- 213 (839)
T ss_pred -ccccccchhhhcee-------eccCC---------------------------CceEEEecCCceEEEeeccCchhHH-
Confidence 11122344455555 44332 2368999999999999999765432
Q ss_pred eccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCe--EEEEecCCCCEEEEEEeCC---EEEEEE--cCC
Q 001349 971 QTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN--MVGSLPTLSEVRAMVVSSE---LVYLGC--KGG 1043 (1094)
Q Consensus 971 ~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~--~~~~~~~~~~v~~l~~spd---~l~sgs--~dg 1043 (1094)
..+.+|.++|.++.|+|++.++|+|+.|+ +|+|||+.+++ ...++....++..+.|-|+ .|++++ .|-
T Consensus 214 ----~k~~AH~GpV~c~nwhPnr~~lATGGRDK-~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dt 288 (839)
T KOG0269|consen 214 ----KKLTAHNGPVLCLNWHPNREWLATGGRDK-MVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDT 288 (839)
T ss_pred ----HHhhcccCceEEEeecCCCceeeecCCCc-cEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccc
Confidence 57789999999999999999999999995 99999998654 4566667899999999998 577765 578
Q ss_pred eEEEEECCCCcE-EEEecccCCcceEEEEEcC-CCCEEEEEeCCCcEE
Q 001349 1044 TVEIWDQKRQIR-IETLQTGTSGKVQCMALDD-NEEFLVIGTSDGRIQ 1089 (1094)
Q Consensus 1044 ~I~vwd~~t~~~-~~~l~~~h~~~I~~l~~Sp-dg~~L~sgs~DG~I~ 1089 (1094)
.|+|||++..-. ..++ ..|...++.++|.. |...+.+++.||+|.
T Consensus 289 sV~VWDvrRPYIP~~t~-~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 289 SVHVWDVRRPYIPYATF-LEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred eEEEEeeccccccceee-eccCccccceeccCCCceeeEeecCccHHH
Confidence 999999987654 4455 68999999999954 456789999999864
No 104
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.84 E-value=2.4e-18 Score=193.24 Aligned_cols=258 Identities=14% Similarity=0.148 Sum_probs=183.1
Q ss_pred cEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EE-EEEECCCeEEEEecCCCcceeEEEecccCCCeEE
Q 001349 786 VKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KI-FSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTG 860 (1094)
Q Consensus 786 ~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~L-aSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~s 860 (1094)
..+++++.|+.|++||.. .....+..|. .+.+++|+|+ .+ ++++.++.|++||..++ ..+..+..+.. +..
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~--~~~~~~~~~~~-~~~ 77 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATG--EVIGTLPSGPD-PEL 77 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCC--cEEEeccCCCC-ccE
Confidence 467899999999999986 3444555443 4678999987 44 67788999999999988 55666655544 567
Q ss_pred EEEecCCCEEEEE-eCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCce
Q 001349 861 LAILQSGEMLYSG-SLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPK 939 (1094)
Q Consensus 861 v~fspdg~~LaSg-s~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~ 939 (1094)
++|+|+++.++++ +.|++|++||+.+++ .+........+..+. |+|+|..
T Consensus 78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~~--~~~~~~~~~~~~~~~-------~~~dg~~-------------------- 128 (300)
T TIGR03866 78 FALHPNGKILYIANEDDNLVTVIDIETRK--VLAEIPVGVEPEGMA-------VSPDGKI-------------------- 128 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCe--EEeEeeCCCCcceEE-------ECCCCCE--------------------
Confidence 8999999977654 568999999998864 222222222233343 8888875
Q ss_pred EEEEeCCEEEEEEcCC-eEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEE-CCCCEEEEEECCCCeEE
Q 001349 940 CLALVQGKVYCGCQDG-AIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTS-LDGAAVKMWSTSNYNMV 1017 (1094)
Q Consensus 940 ~l~~s~~~l~sgs~Dg-~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s-~Dg~~I~iwd~~~~~~~ 1017 (1094)
+++++.++ .+..||..++...... . ....+..+.|++++.+++.++ .++ .|++||+.+++.+
T Consensus 129 --------l~~~~~~~~~~~~~d~~~~~~~~~~------~-~~~~~~~~~~s~dg~~l~~~~~~~~-~v~i~d~~~~~~~ 192 (300)
T TIGR03866 129 --------VVNTSETTNMAHFIDTKTYEIVDNV------L-VDQRPRFAEFTADGKELWVSSEIGG-TVSVIDVATRKVI 192 (300)
T ss_pred --------EEEEecCCCeEEEEeCCCCeEEEEE------E-cCCCccEEEECCCCCEEEEEcCCCC-EEEEEEcCcceee
Confidence 34444443 4677898877654321 1 122456789999988775544 454 9999999999877
Q ss_pred EEecCC--------CCEEEEEEeCC--EEEE-EEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEE-eCC
Q 001349 1018 GSLPTL--------SEVRAMVVSSE--LVYL-GCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIG-TSD 1085 (1094)
Q Consensus 1018 ~~~~~~--------~~v~~l~~spd--~l~s-gs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sg-s~D 1085 (1094)
..+... .....++|+|+ ++++ .+.++.|.+||..+++....+. +...+.+++|+|+|++|+++ +.+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~ 270 (300)
T TIGR03866 193 KKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL--VGQRVWQLAFTPDEKYLLTTNGVS 270 (300)
T ss_pred eeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE--eCCCcceEEECCCCCEEEEEcCCC
Confidence 766421 12356888988 4443 4557789999999998877663 34479999999999999886 468
Q ss_pred CcEEEEeCC
Q 001349 1086 GRIQAWGLS 1094 (1094)
Q Consensus 1086 G~I~iWdls 1094 (1094)
|+|.+||+.
T Consensus 271 ~~i~v~d~~ 279 (300)
T TIGR03866 271 NDVSVIDVA 279 (300)
T ss_pred CeEEEEECC
Confidence 999999974
No 105
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.84 E-value=1.7e-19 Score=185.24 Aligned_cols=270 Identities=18% Similarity=0.251 Sum_probs=205.9
Q ss_pred cCcEEEEeeCCCCeEEEeCCcc-----------------eeecccCCCcEEEEEEeC-C--EEEEEECCCeEEEEecCCC
Q 001349 784 EMVKVLSNGHDSSADFWNHREL-----------------VHVDSSENGKVLSIACFR-D--KIFSGHSDGTIKVWTGRGS 843 (1094)
Q Consensus 784 d~~~l~s~s~dg~I~vWd~~~~-----------------~~~~~~h~~~V~~l~fsp-d--~LaSgs~Dg~I~vWd~~t~ 843 (1094)
.|.++++|+.||.|.+||++.. .....+|.-.|..+.|.| | .+.+++.|.+++|||..|-
T Consensus 55 egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTl 134 (397)
T KOG4283|consen 55 EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTL 134 (397)
T ss_pred cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccc
Confidence 5889999999999999998611 122346888999999999 3 9999999999999999987
Q ss_pred cceeEEEecccCCCeEEEEEec---CCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeE
Q 001349 844 ILHLIQQIREHTKAVTGLAILQ---SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGI 920 (1094)
Q Consensus 844 ~~~~~~~l~~H~~~V~sv~fsp---dg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l 920 (1094)
+....|+ ..+.|.+-++|| ...++++|.+|-.|++-|+.+|.. .-....|.+.|.++. |+|...++
T Consensus 135 --Q~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~-sH~LsGHr~~vlaV~-------Wsp~~e~v 203 (397)
T KOG4283|consen 135 --QEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF-SHTLSGHRDGVLAVE-------WSPSSEWV 203 (397)
T ss_pred --eeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc-eeeeccccCceEEEE-------eccCceeE
Confidence 5555554 567888889988 345788888999999999999862 222345677888887 77766653
Q ss_pred EEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCC-ceeEEeccc--------eeecCCCCCeEEEEEeC
Q 001349 921 KVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATG-TFATIQTGH--------RKLLGKANPVHALQVHN 991 (1094)
Q Consensus 921 ~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~-~~~~~~~~~--------~~~~~h~~~V~sl~fs~ 991 (1094)
+++|+.||.|++||++.. .+...+..+ +.-..|.+.|+.++|..
T Consensus 204 ---------------------------LatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS 256 (397)
T KOG4283|consen 204 ---------------------------LATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS 256 (397)
T ss_pred ---------------------------EEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc
Confidence 899999999999999864 333322221 12456889999999999
Q ss_pred CccEEEEEECCCCEEEEEECCCCeEEE-Ee---cC----CCCEEEEEEeCCEEEEEEcCCeEEEEECCCCcEEEEecccC
Q 001349 992 GLVYTASTSLDGAAVKMWSTSNYNMVG-SL---PT----LSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGT 1063 (1094)
Q Consensus 992 ~~~~las~s~Dg~~I~iwd~~~~~~~~-~~---~~----~~~v~~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~h 1063 (1094)
++.++++++.|+ .+++|+..+|...- .+ .+ +-.+.--+.+.+.++.--.++.+.++++-.+..+..+ .+|
T Consensus 257 d~~~l~~~gtd~-r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l-~~h 334 (397)
T KOG4283|consen 257 DARYLASCGTDD-RIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRL-STH 334 (397)
T ss_pred cchhhhhccCcc-ceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEee-ecc
Confidence 999999999997 99999998875321 11 11 1112211222333444445699999999999999999 588
Q ss_pred CcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1064 SGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1064 ~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
...|.+.++-|+-+...+|+.|+.|..|-.
T Consensus 335 ~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 335 LKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred cceeeEEeecCchhhhhccccCCccccccc
Confidence 889999999999999999999999999953
No 106
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.2e-19 Score=197.64 Aligned_cols=230 Identities=20% Similarity=0.340 Sum_probs=186.9
Q ss_pred CcEEEEeeCC-CCeEEEeCCcceee--cccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeE
Q 001349 785 MVKVLSNGHD-SSADFWNHRELVHV--DSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVT 859 (1094)
Q Consensus 785 ~~~l~s~s~d-g~I~vWd~~~~~~~--~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~ 859 (1094)
+.+++++... ..+.+|.+...... ..--.++|.|++-+|+ +++.|+..|.|++|.+.+| ..+..+.+|-..|+
T Consensus 50 ~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG--~LL~v~~aHYQ~IT 127 (476)
T KOG0646|consen 50 NEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSG--ILLNVLSAHYQSIT 127 (476)
T ss_pred hhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccc--cHHHHHHhhcccee
Confidence 3566666544 57889998743322 2334688999999986 7777779999999999999 78888899999999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCce
Q 001349 860 GLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPK 939 (1094)
Q Consensus 860 sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~ 939 (1094)
++.|+-||.+|+|||.||.|.+|++.+
T Consensus 128 cL~fs~dgs~iiTgskDg~V~vW~l~~----------------------------------------------------- 154 (476)
T KOG0646|consen 128 CLKFSDDGSHIITGSKDGAVLVWLLTD----------------------------------------------------- 154 (476)
T ss_pred EEEEeCCCcEEEecCCCccEEEEEEEe-----------------------------------------------------
Confidence 999999999999999999999999855
Q ss_pred EEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCC--ccEEEEEECCCCEEEEEECCCCeEE
Q 001349 940 CLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG--LVYTASTSLDGAAVKMWSTSNYNMV 1017 (1094)
Q Consensus 940 ~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~--~~~las~s~Dg~~I~iwd~~~~~~~ 1017 (1094)
++.+..|+ +-.+. ..+..|.-+|+.+...++ ..++++.|.| +++++||+..+..+
T Consensus 155 --------lv~a~~~~--------~~~p~------~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D-~t~k~wdlS~g~LL 211 (476)
T KOG0646|consen 155 --------LVSADNDH--------SVKPL------HIFSDHTLSITDLQIGSGGTNARLYTASED-RTIKLWDLSLGVLL 211 (476)
T ss_pred --------ecccccCC--------Cccce------eeeccCcceeEEEEecCCCccceEEEecCC-ceEEEEEeccceee
Confidence 22222222 12222 466778889999988654 4578888888 49999999999999
Q ss_pred EEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCC----------------CcEEEEecccCCc--ceEEEEEcCCCC
Q 001349 1018 GSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKR----------------QIRIETLQTGTSG--KVQCMALDDNEE 1077 (1094)
Q Consensus 1018 ~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t----------------~~~~~~l~~~h~~--~I~~l~~Spdg~ 1077 (1094)
.++..+..+.+++++|- .+++|+.+|.|.+.++.. +..+..+ .||.+ .|+|++++.||.
T Consensus 212 lti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~-~Gh~~~~~ITcLais~Dgt 290 (476)
T KOG0646|consen 212 LTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVL-VGHENESAITCLAISTDGT 290 (476)
T ss_pred EEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeee-ccccCCcceeEEEEecCcc
Confidence 99999999999999997 899999999999988643 2244555 58888 999999999999
Q ss_pred EEEEEeCCCcEEEEeC
Q 001349 1078 FLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1078 ~L~sgs~DG~I~iWdl 1093 (1094)
.|++|+.||+|.|||+
T Consensus 291 lLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 291 LLLSGDEDGKVCVWDI 306 (476)
T ss_pred EEEeeCCCCCEEEEec
Confidence 9999999999999997
No 107
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.84 E-value=7e-20 Score=207.53 Aligned_cols=237 Identities=18% Similarity=0.306 Sum_probs=197.7
Q ss_pred ceeecccCCCcEEEEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEE-EEEec-CCCEEEEEeCCCcEEE
Q 001349 805 LVHVDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTG-LAILQ-SGEMLYSGSLDKTARV 881 (1094)
Q Consensus 805 ~~~~~~~h~~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~s-v~fsp-dg~~LaSgs~DgtI~v 881 (1094)
..+.+.+|...|..+++.++ .++++|.||++++|+-..+.+.....+.+|.+.|.. +++-+ ++-.+++|+.|++|.+
T Consensus 6 ls~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v 85 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIV 85 (745)
T ss_pred eEEEeccCccchheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEE
Confidence 45678899999999998887 799999999999999988876677788899998887 88876 5556999999999999
Q ss_pred EECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEe-CCEEEEEEcCCeEEEE
Q 001349 882 WSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALV-QGKVYCGCQDGAIQEI 960 (1094)
Q Consensus 882 Wdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s-~~~l~sgs~Dg~I~iw 960 (1094)
|...+.. ...... .|...|+|+... ++.+++||.|.++++|
T Consensus 86 ~~~~~~~-P~~~Lk-------------------------------------gH~snVC~ls~~~~~~~iSgSWD~TakvW 127 (745)
T KOG0301|consen 86 FKLSQAE-PLYTLK-------------------------------------GHKSNVCSLSIGEDGTLISGSWDSTAKVW 127 (745)
T ss_pred EecCCCC-chhhhh-------------------------------------ccccceeeeecCCcCceEecccccceEEe
Confidence 9998853 111122 234445555533 3458999999999999
Q ss_pred ECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC-EEEE
Q 001349 961 DLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE-LVYL 1038 (1094)
Q Consensus 961 Dl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd-~l~s 1038 (1094)
-.. ++. ..+.+|...|.++.+-|+. .+++|+.| ++|++|.- ++.+++|. |.+-|+++++-++ .+++
T Consensus 128 ~~~--~l~------~~l~gH~asVWAv~~l~e~-~~vTgsaD-KtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flS 195 (745)
T KOG0301|consen 128 RIG--ELV------YSLQGHTASVWAVASLPEN-TYVTGSAD-KTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLS 195 (745)
T ss_pred cch--hhh------cccCCcchheeeeeecCCC-cEEeccCc-ceeeeccC--CchhhhhccchhheeeeEEecCCCeEe
Confidence 754 433 4578999999999999888 66888888 59999975 77888888 7889999999998 9999
Q ss_pred EEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1039 GCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1039 gs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
++.||.|+.|++ +|.++..+ .||...|.++...+++..++++++|++++||+.
T Consensus 196 csNDg~Ir~w~~-~ge~l~~~-~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~ 248 (745)
T KOG0301|consen 196 CSNDGSIRLWDL-DGEVLLEM-HGHTNFVYSISMALSDGLIVSTGEDRTLRIWKK 248 (745)
T ss_pred ecCCceEEEEec-cCceeeee-eccceEEEEEEecCCCCeEEEecCCceEEEeec
Confidence 999999999999 78888888 599999999998888999999999999999985
No 108
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.7e-19 Score=194.28 Aligned_cols=270 Identities=13% Similarity=0.252 Sum_probs=212.9
Q ss_pred CCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCCCc
Q 001349 812 ENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGE-MLYSGSLDKTARVWSIGNEE 888 (1094)
Q Consensus 812 h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~-~LaSgs~DgtI~vWdi~~~~ 888 (1094)
..+.|+++.|+|. .+.+++.||+++||.+.+.....++.+.--..+|.+..|.|+|. .++++|.....+.||+.+.+
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 3689999999996 99999999999999988765567777766678999999999999 99999999999999999876
Q ss_pred eEEEEecc-cC-ccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC-----------CCCceEEEEeC--CEEEEEEc
Q 001349 889 IHCVQVHD-IK-DQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS-----------SKYPKCLALVQ--GKVYCGCQ 953 (1094)
Q Consensus 889 ~~~~~~~~-~~-~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~-----------~~~v~~l~~s~--~~l~sgs~ 953 (1094)
...+.... +. ..+.... +++++++|++.+.+|.|.+... .+.+..+.|+. ..|++.+.
T Consensus 292 ~~k~~~~~g~e~~~~e~Fe-------VShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~ 364 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFE-------VSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGG 364 (514)
T ss_pred cccccCCCCcccchhheeE-------ecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcC
Confidence 43333221 11 1333333 7999999999999999988764 45677888863 34888889
Q ss_pred CCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCC------CeEEEEec-CCCCE
Q 001349 954 DGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSN------YNMVGSLP-TLSEV 1026 (1094)
Q Consensus 954 Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~------~~~~~~~~-~~~~v 1026 (1094)
+|.|.+||+++..++..+.....+ .-++++.+.++.|+|+|+..| .|.|||..+ .+++.++. -...|
T Consensus 365 ~GeV~v~nl~~~~~~~rf~D~G~v-----~gts~~~S~ng~ylA~GS~~G-iVNIYd~~s~~~s~~PkPik~~dNLtt~I 438 (514)
T KOG2055|consen 365 TGEVYVWNLRQNSCLHRFVDDGSV-----HGTSLCISLNGSYLATGSDSG-IVNIYDGNSCFASTNPKPIKTVDNLTTAI 438 (514)
T ss_pred CceEEEEecCCcceEEEEeecCcc-----ceeeeeecCCCceEEeccCcc-eEEEeccchhhccCCCCchhhhhhhheee
Confidence 999999999999888655433111 235677789999999999887 999999653 45565555 46789
Q ss_pred EEEEEeCC--EEEEEE--cCCeEEEEECCCCcEEEEeccc--CCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1027 RAMVVSSE--LVYLGC--KGGTVEIWDQKRQIRIETLQTG--TSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1027 ~~l~~spd--~l~sgs--~dg~I~vwd~~t~~~~~~l~~~--h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
+++.|++| .++.+| .++.+++-.+.+......+... .-+.|+|++|||.|.+|+.|..+|.|.+|.+.
T Consensus 439 tsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 439 TSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 99999999 555555 5789999999988777766432 23479999999999999999999999999873
No 109
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=6.3e-19 Score=182.74 Aligned_cols=255 Identities=17% Similarity=0.252 Sum_probs=184.2
Q ss_pred ecccCCCcEEEEEEeC--CEEEEEECCCeEEEEecC--CCcceeEEEecccCCCeEEEEEec--CCCEEEEEeCCCcEEE
Q 001349 808 VDSSENGKVLSIACFR--DKIFSGHSDGTIKVWTGR--GSILHLIQQIREHTKAVTGLAILQ--SGEMLYSGSLDKTARV 881 (1094)
Q Consensus 808 ~~~~h~~~V~~l~fsp--d~LaSgs~Dg~I~vWd~~--t~~~~~~~~l~~H~~~V~sv~fsp--dg~~LaSgs~DgtI~v 881 (1094)
...+|.+-|+++.|.. ..+|||+.|++|+|||.. ++.+.+...++.|.+.|+.|.|.+ -|+.+|++|.|++++|
T Consensus 8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence 4568899999999976 599999999999999954 566788889999999999999976 5999999999999999
Q ss_pred EECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCC----EEEEEEcCCeE
Q 001349 882 WSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQG----KVYCGCQDGAI 957 (1094)
Q Consensus 882 Wdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~----~l~sgs~Dg~I 957 (1094)
|.-...... ..|+ .|.....+.+....|..+.|.|. ++++++.||.+
T Consensus 88 WEE~~~~~~------------------------~~~~-----~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~l 138 (361)
T KOG2445|consen 88 WEEQEKSEE------------------------AHGR-----RWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGIL 138 (361)
T ss_pred eeecccccc------------------------cccc-----eeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEE
Confidence 975321100 0000 00011122233444555555542 48999999999
Q ss_pred EEEECCCCceeEEeccce-------eecCCCCCeEEEEEeCC---ccEEEEEECCC----CEEEEEECCCCe----EEEE
Q 001349 958 QEIDLATGTFATIQTGHR-------KLLGKANPVHALQVHNG---LVYTASTSLDG----AAVKMWSTSNYN----MVGS 1019 (1094)
Q Consensus 958 ~iwDl~~~~~~~~~~~~~-------~~~~h~~~V~sl~fs~~---~~~las~s~Dg----~~I~iwd~~~~~----~~~~ 1019 (1094)
+||+.-....+...+-.. ....+..+..|+.|++. ..+++.++.++ +.++||....+. .+.+
T Consensus 139 RIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~ 218 (361)
T KOG2445|consen 139 RIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAE 218 (361)
T ss_pred EEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehh
Confidence 999876543332111111 12245677889999864 45677776541 378888775432 3334
Q ss_pred ec-CCCCEEEEEEeCC------EEEEEEcCCeEEEEECCCC--------------------cEEEEecccCCcceEEEEE
Q 001349 1020 LP-TLSEVRAMVVSSE------LVYLGCKGGTVEIWDQKRQ--------------------IRIETLQTGTSGKVQCMAL 1072 (1094)
Q Consensus 1020 ~~-~~~~v~~l~~spd------~l~sgs~dg~I~vwd~~t~--------------------~~~~~l~~~h~~~I~~l~~ 1072 (1094)
+. +..+|+.++|.|+ .+++++.|| |+||++... +.+..+ .+|.+.|+.+.|
T Consensus 219 L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~-~~H~~~VWrv~w 296 (361)
T KOG2445|consen 219 LPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSEL-DDHNGEVWRVRW 296 (361)
T ss_pred cCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeec-cCCCCceEEEEE
Confidence 44 7899999999998 599999999 999998731 133445 689999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeC
Q 001349 1073 DDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1073 Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
+-.|..|.+.|.||.|++|.-
T Consensus 297 NmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 297 NMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred eeeeeEEeecCCCceeeehhh
Confidence 999999999999999999964
No 110
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.84 E-value=1.3e-20 Score=189.53 Aligned_cols=240 Identities=20% Similarity=0.279 Sum_probs=206.7
Q ss_pred eecccCCCcEEEEEEeC---C--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 001349 807 HVDSSENGKVLSIACFR---D--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARV 881 (1094)
Q Consensus 807 ~~~~~h~~~V~~l~fsp---d--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~v 881 (1094)
.+..+|+.+|..++||| + +|++++.||.-.+-+-+|| .-+.+|.+|.+.||+...+.+...-++++.|-+-+|
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tg--dwigtfeghkgavw~~~l~~na~~aasaaadftakv 85 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTG--DWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKV 85 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCC--CcEEeeeccCcceeeeecCchhhhhhhhcccchhhh
Confidence 45679999999999997 3 8999999999999999999 679999999999999999999889999999999999
Q ss_pred EECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEE
Q 001349 882 WSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEID 961 (1094)
Q Consensus 882 Wdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwD 961 (1094)
||.-+|. .+..+.|+.-|..++ |+.|.+ .|++|+.+..+++||
T Consensus 86 w~a~tgd--elhsf~hkhivk~~a-------f~~ds~----------------------------~lltgg~ekllrvfd 128 (334)
T KOG0278|consen 86 WDAVTGD--ELHSFEHKHIVKAVA-------FSQDSN----------------------------YLLTGGQEKLLRVFD 128 (334)
T ss_pred hhhhhhh--hhhhhhhhheeeeEE-------ecccch----------------------------hhhccchHHHhhhhh
Confidence 9998874 334445555666666 666655 488999999999999
Q ss_pred CCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC-EEEEEE
Q 001349 962 LATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE-LVYLGC 1040 (1094)
Q Consensus 962 l~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd-~l~sgs 1040 (1094)
+...+-.. ..+.+|.+.|..+.|......+.+.+.| ++||+||.+++..++++....+|+++.++++ .+++-.
T Consensus 129 ln~p~App-----~E~~ghtg~Ir~v~wc~eD~~iLSSadd-~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia 202 (334)
T KOG0278|consen 129 LNRPKAPP-----KEISGHTGGIRTVLWCHEDKCILSSADD-KTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIA 202 (334)
T ss_pred ccCCCCCc-----hhhcCCCCcceeEEEeccCceEEeeccC-CceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEe
Confidence 98765432 5678999999999998766666776555 5999999999999999999999999999999 677888
Q ss_pred cCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1041 KGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1041 ~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
..+.|.+||..+..+++.++ -...|.+...+|+..++++|+.|+.++.||.
T Consensus 203 ~gssV~Fwdaksf~~lKs~k--~P~nV~SASL~P~k~~fVaGged~~~~kfDy 253 (334)
T KOG0278|consen 203 YGSSVKFWDAKSFGLLKSYK--MPCNVESASLHPKKEFFVAGGEDFKVYKFDY 253 (334)
T ss_pred cCceeEEeccccccceeecc--CccccccccccCCCceEEecCcceEEEEEec
Confidence 88999999999999998885 4457999999999999999999999999986
No 111
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2e-18 Score=180.75 Aligned_cols=239 Identities=15% Similarity=0.224 Sum_probs=191.8
Q ss_pred ecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeC--CCcEEEEE
Q 001349 808 VDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSL--DKTARVWS 883 (1094)
Q Consensus 808 ~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~--DgtI~vWd 883 (1094)
.+....+.|.++.|+++ ++++++.|.++++||..++ +.++++..+.-.|..+.|....+.++.++. |.+||.-+
T Consensus 9 ~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g--~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLs 86 (311)
T KOG1446|consen 9 VFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSG--KQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLS 86 (311)
T ss_pred ccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCC--ceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEE
Confidence 44446789999999986 8999999999999999999 889999888889999999887777777776 88999999
Q ss_pred CCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECC
Q 001349 884 IGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLA 963 (1094)
Q Consensus 884 i~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~ 963 (1094)
+.+++ .......|...|.++. .+|-+. .+++++.|++|++||++
T Consensus 87 l~dNk-ylRYF~GH~~~V~sL~-------~sP~~d----------------------------~FlS~S~D~tvrLWDlR 130 (311)
T KOG1446|consen 87 LHDNK-YLRYFPGHKKRVNSLS-------VSPKDD----------------------------TFLSSSLDKTVRLWDLR 130 (311)
T ss_pred eecCc-eEEEcCCCCceEEEEE-------ecCCCC----------------------------eEEecccCCeEEeeEec
Confidence 98874 2223335667777766 444443 58899999999999999
Q ss_pred CCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCC--eEEEEec----CCCCEEEEEEeCC--E
Q 001349 964 TGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNY--NMVGSLP----TLSEVRAMVVSSE--L 1035 (1094)
Q Consensus 964 ~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~--~~~~~~~----~~~~v~~l~~spd--~ 1035 (1094)
..++...+. ...-...+|+|.|.++|.+...+ .|++||++.. .+..++. .....+.+.|||| +
T Consensus 131 ~~~cqg~l~--------~~~~pi~AfDp~GLifA~~~~~~-~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~ 201 (311)
T KOG1446|consen 131 VKKCQGLLN--------LSGRPIAAFDPEGLIFALANGSE-LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKS 201 (311)
T ss_pred CCCCceEEe--------cCCCcceeECCCCcEEEEecCCC-eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCE
Confidence 877764322 12334678999999999998765 9999999864 3555554 2567899999999 7
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEecccCCcc---eEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1036 VYLGCKGGTVEIWDQKRQIRIETLQTGTSGK---VQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1036 l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~---I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
++.++..+.+++.|.-+|....++. ++... --+.+|+||++++++|+.||+|.+|++.
T Consensus 202 iLlsT~~s~~~~lDAf~G~~~~tfs-~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~ 262 (311)
T KOG1446|consen 202 ILLSTNASFIYLLDAFDGTVKSTFS-GYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLE 262 (311)
T ss_pred EEEEeCCCcEEEEEccCCcEeeeEe-eccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcC
Confidence 8899999999999999999988883 55432 2577899999999999999999999873
No 112
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.83 E-value=1.1e-19 Score=204.12 Aligned_cols=301 Identities=14% Similarity=0.143 Sum_probs=200.7
Q ss_pred CcEEEEeeCCCCeEEEeCCcc--------eeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEeccc
Q 001349 785 MVKVLSNGHDSSADFWNHREL--------VHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREH 854 (1094)
Q Consensus 785 ~~~l~s~s~dg~I~vWd~~~~--------~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H 854 (1094)
-..|+.+..||.|.++|.... ......|.+.|..+.|-|. .|++++.|.++++||+++++..-...+.||
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH 143 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGH 143 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeeccc
Confidence 347889999999999998732 2345679999999999995 999999999999999999843333348999
Q ss_pred CCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEc
Q 001349 855 TKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN 933 (1094)
Q Consensus 855 ~~~V~sv~fsp-dg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~ 933 (1094)
++.|.+++|.| |...|++|+.||.|.|||++-.....+... ...++...-... .-..|-.+. ...+...--.
T Consensus 144 ~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~--~~~~~~~~n~~p-tpskp~~kr----~~k~kA~s~t 216 (720)
T KOG0321|consen 144 TGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEF--DNRIYGRHNTAP-TPSKPLKKR----IRKWKAASNT 216 (720)
T ss_pred ccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHH--hhhhhccccCCC-CCCchhhcc----ccccccccCc
Confidence 99999999999 567899999999999999976431111100 000110000000 000000000 0000000001
Q ss_pred CCCCceEEEEeC-CEEEEEEc-CCeEEEEECCCCceeEEeccce--eecCC---CCCeEEEEEeCCccEEEEEECCCCEE
Q 001349 934 SSKYPKCLALVQ-GKVYCGCQ-DGAIQEIDLATGTFATIQTGHR--KLLGK---ANPVHALQVHNGLVYTASTSLDGAAV 1006 (1094)
Q Consensus 934 ~~~~v~~l~~s~-~~l~sgs~-Dg~I~iwDl~~~~~~~~~~~~~--~~~~h---~~~V~sl~fs~~~~~las~s~Dg~~I 1006 (1094)
....|+.+.|.+ ..|++++. |+.|++||++............ .+..| .-.+.++..+..|.++.....|+ .|
T Consensus 217 i~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~-sI 295 (720)
T KOG0321|consen 217 IFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDN-SI 295 (720)
T ss_pred eeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCC-cE
Confidence 123466777765 55888777 9999999999876554332211 22223 23466777776666666666686 99
Q ss_pred EEEECCCCe--EEEEecCC---CCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCC-CE
Q 001349 1007 KMWSTSNYN--MVGSLPTL---SEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNE-EF 1078 (1094)
Q Consensus 1007 ~iwd~~~~~--~~~~~~~~---~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg-~~ 1078 (1094)
..||+.+.. ++..+.+. .....-..+|| ++++|+.|...++|.+.+.+.--.+..||.-.|++++|.|.. .-
T Consensus 296 y~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~ 375 (720)
T KOG0321|consen 296 YFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTP 375 (720)
T ss_pred EEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCC
Confidence 999998643 33444332 11222234555 999999999999999998776555557999999999998743 34
Q ss_pred EEEEeCCCcEEEEeC
Q 001349 1079 LVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1079 L~sgs~DG~I~iWdl 1093 (1094)
++|+++|.+++||++
T Consensus 376 v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 376 VATCSDDFRVKIWRL 390 (720)
T ss_pred ceeeccCcceEEEec
Confidence 677799999999997
No 113
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.83 E-value=1.4e-18 Score=196.03 Aligned_cols=307 Identities=15% Similarity=0.191 Sum_probs=221.6
Q ss_pred cccccCcEEEEeeCCCCeEEEeCCccee---ecccC-----------------------CCcEEEEEEeC--CEEEEEEC
Q 001349 780 PLAFEMVKVLSNGHDSSADFWNHRELVH---VDSSE-----------------------NGKVLSIACFR--DKIFSGHS 831 (1094)
Q Consensus 780 ~~~~d~~~l~s~s~dg~I~vWd~~~~~~---~~~~h-----------------------~~~V~~l~fsp--d~LaSgs~ 831 (1094)
.+....++|++|+.+|+|++|+..+... ....| --...++.|.+ +.+.....
T Consensus 265 CIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYn 344 (1080)
T KOG1408|consen 265 CICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYN 344 (1080)
T ss_pred eeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEc
Confidence 3445678999999999999998752111 00111 11234667886 38889999
Q ss_pred CCeEEEEecCCCc-ceeEEEecccCCCeEEEEEecC-----------CCEEEEEeCCCcEEEEECCCCceEEE---Eec-
Q 001349 832 DGTIKVWTGRGSI-LHLIQQIREHTKAVTGLAILQS-----------GEMLYSGSLDKTARVWSIGNEEIHCV---QVH- 895 (1094)
Q Consensus 832 Dg~I~vWd~~t~~-~~~~~~l~~H~~~V~sv~fspd-----------g~~LaSgs~DgtI~vWdi~~~~~~~~---~~~- 895 (1094)
|..++|||++.-. ......+-.|...||+|.--|. ...++|+|.|+|||+||+..+....+ ...
T Consensus 345 dhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils 424 (1080)
T KOG1408|consen 345 DHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILS 424 (1080)
T ss_pred CceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccch
Confidence 9999999998631 1233445579999999877651 13689999999999999987431100 000
Q ss_pred -----------------ccCcccee--------eeecCceEEEeeCCCeEEEEEeCCeEEEEc------------CCCCc
Q 001349 896 -----------------DIKDQIQN--------LAVSNSILCFIPQGAGIKVHLRNGKTKLLN------------SSKYP 938 (1094)
Q Consensus 896 -----------------~~~~~V~~--------v~~~~~~~~fspdg~~l~~~~~~g~i~l~~------------~~~~v 938 (1094)
....++.. -.+.-..++++|+|++++.+..-|++++++ |...|
T Consensus 425 ~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEi 504 (1080)
T KOG1408|consen 425 ANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEI 504 (1080)
T ss_pred hhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheeccccee
Confidence 00000000 001111456999999999999999999987 45789
Q ss_pred eEEEEeC-----CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCc--cEEEEEECCCCEEEEEEC
Q 001349 939 KCLALVQ-----GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGL--VYTASTSLDGAAVKMWST 1011 (1094)
Q Consensus 939 ~~l~~s~-----~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~--~~las~s~Dg~~I~iwd~ 1011 (1094)
.|+.|+. ..|++++.|.-|++||+...-.+. .++.+|...|+++.|-.++ ..+++++.|. .| .|+.
T Consensus 505 lcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~-----qtld~HSssITsvKFa~~gln~~MiscGADk-si-mFr~ 577 (1080)
T KOG1408|consen 505 LCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLV-----QTLDGHSSSITSVKFACNGLNRKMISCGADK-SI-MFRV 577 (1080)
T ss_pred EEEeecCchhhhHhhhhccCCceEEEEecccccchh-----hhhcccccceeEEEEeecCCceEEEeccCch-hh-heeh
Confidence 9999984 348999999999999987654332 6788999999999997554 6778888773 33 4444
Q ss_pred CC----CeEEEEec---CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecc--cCCcceEEEEEcCCCCEEE
Q 001349 1012 SN----YNMVGSLP---TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQT--GTSGKVQCMALDDNEEFLV 1080 (1094)
Q Consensus 1012 ~~----~~~~~~~~---~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~--~h~~~I~~l~~Spdg~~L~ 1080 (1094)
.. |.....-. .+..+..|++.|. ++++++.|..|+|||+.+|+..+.|+. +|.+....+...|.|-||+
T Consensus 578 ~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~a 657 (1080)
T KOG1408|consen 578 NQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLA 657 (1080)
T ss_pred hccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEE
Confidence 32 22211111 2466889999998 899999999999999999999999964 4556788899999999999
Q ss_pred EEeCCCcEEEEeC
Q 001349 1081 IGTSDGRIQAWGL 1093 (1094)
Q Consensus 1081 sgs~DG~I~iWdl 1093 (1094)
+...|.++.++|+
T Consensus 658 tScsdktl~~~Df 670 (1080)
T KOG1408|consen 658 TSCSDKTLCFVDF 670 (1080)
T ss_pred EeecCCceEEEEe
Confidence 9999999999996
No 114
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.83 E-value=1.3e-17 Score=182.50 Aligned_cols=299 Identities=15% Similarity=0.231 Sum_probs=223.0
Q ss_pred ccccc-cCcEEEEeeCCCCeEEEeCCc-----ceeecccC-CCcEEEEEEeCC-EEEEEECCCeEEEEecCCCcceeEEE
Q 001349 779 SPLAF-EMVKVLSNGHDSSADFWNHRE-----LVHVDSSE-NGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQ 850 (1094)
Q Consensus 779 ~~~~~-d~~~l~s~s~dg~I~vWd~~~-----~~~~~~~h-~~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~ 850 (1094)
..|.| +.+.+++++ .|.+..|+... ..-++..+ ...|.|++|.++ -++||.++|.|.||+..+. +..+.
T Consensus 206 a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~--~~~k~ 282 (626)
T KOG2106|consen 206 ATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTN--RISKQ 282 (626)
T ss_pred EEeccCCCcEEEEeC-CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCc--eEEeE
Confidence 33444 555666655 57889998872 12223333 478999999997 9999999999999999877 56666
Q ss_pred ecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCC--e
Q 001349 851 IREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNG--K 928 (1094)
Q Consensus 851 l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g--~ 928 (1094)
...|.+.|.+++...+|.+| ||+.|..|..||-+-.+.+.....+..+++..++-....+.+-...+.+.-++..+ +
T Consensus 283 ~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~ 361 (626)
T KOG2106|consen 283 VHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFT 361 (626)
T ss_pred eeecCCceEEEEEecCccEe-ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCce
Confidence 66999999999999999755 59999999999955444555556666677777764433333333333343333332 3
Q ss_pred EEEEcCCCCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEE
Q 001349 929 TKLLNSSKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAV 1006 (1094)
Q Consensus 929 i~l~~~~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I 1006 (1094)
+.+..|......++.++ +.+++++.|+++++|+ ..+.... +. ...++.++.|+|.+ .++.|...| ..
T Consensus 362 ~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt----~~---~~d~~~~~~fhpsg-~va~Gt~~G-~w 430 (626)
T KOG2106|consen 362 LTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWT----KI---IEDPAECADFHPSG-VVAVGTATG-RW 430 (626)
T ss_pred EEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEE----EE---ecCceeEeeccCcc-eEEEeeccc-eE
Confidence 34566777888888876 5699999999999999 3343322 11 23688999999999 778888887 88
Q ss_pred EEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCc-EEEEecccCCcceEEEEEcCCCCEEEEEe
Q 001349 1007 KMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQI-RIETLQTGTSGKVQCMALDDNEEFLVIGT 1083 (1094)
Q Consensus 1007 ~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~-~~~~l~~~h~~~I~~l~~Spdg~~L~sgs 1083 (1094)
.+.|..+...+..-..+.+++.+.|+|+ +++.|+.|+.|+||-+.... ........|..+|+.+.||+|+++|.+-+
T Consensus 431 ~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S 510 (626)
T KOG2106|consen 431 FVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNS 510 (626)
T ss_pred EEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEecc
Confidence 9999998777666667889999999998 89999999999999987543 33333233457999999999999999999
Q ss_pred CCCcEEEEe
Q 001349 1084 SDGRIQAWG 1092 (1094)
Q Consensus 1084 ~DG~I~iWd 1092 (1094)
-|-.|..|.
T Consensus 511 ~d~eiLyW~ 519 (626)
T KOG2106|consen 511 GDYEILYWK 519 (626)
T ss_pred CceEEEEEc
Confidence 999999994
No 115
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.83 E-value=2.1e-19 Score=195.95 Aligned_cols=232 Identities=14% Similarity=0.148 Sum_probs=182.2
Q ss_pred cccccCcEEEEeeCCCCeEEEeCCc------------ceeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCc
Q 001349 780 PLAFEMVKVLSNGHDSSADFWNHRE------------LVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSI 844 (1094)
Q Consensus 780 ~~~~d~~~l~s~s~dg~I~vWd~~~------------~~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~ 844 (1094)
.+..++..+++++..+.|.|||+.+ ....+.+|.+.-++++|++. .+++|+.|++|++||+....
T Consensus 132 ymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~ 211 (422)
T KOG0264|consen 132 YMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAES 211 (422)
T ss_pred hCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccc
Confidence 3444677899999999999999861 12267899998889999985 99999999999999997532
Q ss_pred -----ceeEEEecccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCc-eEEEEecccCccceeeeecCceEEEeeCC
Q 001349 845 -----LHLIQQIREHTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEE-IHCVQVHDIKDQIQNLAVSNSILCFIPQG 917 (1094)
Q Consensus 845 -----~~~~~~l~~H~~~V~sv~fsp-dg~~LaSgs~DgtI~vWdi~~~~-~~~~~~~~~~~~V~~v~~~~~~~~fspdg 917 (1094)
......+.+|++.|..++|++ +...++++++|+.+.|||+++++ ........|..+|.+++ |+|-+
T Consensus 212 ~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~-------fnp~~ 284 (422)
T KOG0264|consen 212 KEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVA-------FNPFN 284 (422)
T ss_pred cCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEE-------eCCCC
Confidence 345677899999999999999 67799999999999999999632 12222334566666666 55554
Q ss_pred CeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCC-ccEE
Q 001349 918 AGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG-LVYT 996 (1094)
Q Consensus 918 ~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~-~~~l 996 (1094)
.. .|++|+.|++|.+||+++-.... .++.+|...|..|.|+|+ ...+
T Consensus 285 ~~---------------------------ilAT~S~D~tV~LwDlRnL~~~l-----h~~e~H~dev~~V~WSPh~etvL 332 (422)
T KOG0264|consen 285 EF---------------------------ILATGSADKTVALWDLRNLNKPL-----HTFEGHEDEVFQVEWSPHNETVL 332 (422)
T ss_pred Cc---------------------------eEEeccCCCcEEEeechhcccCc-----eeccCCCcceEEEEeCCCCCcee
Confidence 43 48999999999999999866532 688999999999999986 4566
Q ss_pred EEEECCCCEEEEEECCCCeEE------------EEec---CCCCEEEEEEeCC---EEEEEEcCCeEEEEECC
Q 001349 997 ASTSLDGAAVKMWSTSNYNMV------------GSLP---TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQK 1051 (1094)
Q Consensus 997 as~s~Dg~~I~iwd~~~~~~~------------~~~~---~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~ 1051 (1094)
++++.|+ .+.+||+..-... --|. |...|..+.|+|+ .+++.++|+.+.||.+.
T Consensus 333 ASSg~D~-rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 333 ASSGTDR-RLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred EecccCC-cEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 7777775 9999999642211 1233 5677999999998 78999999999999976
No 116
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.83 E-value=3.3e-19 Score=181.36 Aligned_cols=266 Identities=15% Similarity=0.196 Sum_probs=204.3
Q ss_pred HHhhhccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcc
Q 001349 770 KGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSIL 845 (1094)
Q Consensus 770 ~~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~ 845 (1094)
++|.+.....-+..+|..|++++.|.++.||-.. +.+-++.||++.|+|+..+.+ .++||+.|.++++||+.+|
T Consensus 7 ~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG-- 84 (327)
T KOG0643|consen 7 QGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG-- 84 (327)
T ss_pred ccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC--
Confidence 4566666677788899999999999999999763 677889999999999998765 9999999999999999999
Q ss_pred eeEEEecccCCCeEEEEEecCCCEEEEEeC-----CCcEEEEECCCCc------eEEEEecccCccceeeeecCceEEEe
Q 001349 846 HLIQQIREHTKAVTGLAILQSGEMLYSGSL-----DKTARVWSIGNEE------IHCVQVHDIKDQIQNLAVSNSILCFI 914 (1094)
Q Consensus 846 ~~~~~l~~H~~~V~sv~fspdg~~LaSgs~-----DgtI~vWdi~~~~------~~~~~~~~~~~~V~~v~~~~~~~~fs 914 (1094)
+++.+++ -..+|..+.|+++|++++...+ .+.|.++|++... -.........+.+...- |.
T Consensus 85 k~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~-------Wg 156 (327)
T KOG0643|consen 85 KQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSAL-------WG 156 (327)
T ss_pred cEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeee-------ec
Confidence 7888875 5678999999999998887755 3679999998432 11222222334455444 99
Q ss_pred eCCCeEEEEEeCCeEEEEcC-------------CCCceEEEEeCC--EEEEEEcCCeEEEEECCCCceeEEeccceeecC
Q 001349 915 PQGAGIKVHLRNGKTKLLNS-------------SKYPKCLALVQG--KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLG 979 (1094)
Q Consensus 915 pdg~~l~~~~~~g~i~l~~~-------------~~~v~~l~~s~~--~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~ 979 (1094)
|-++.|+.+..+|.+..|+. ...|+.+.++++ .+++|+.|.+-++||..+-+.+.++..
T Consensus 157 ~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t------ 230 (327)
T KOG0643|consen 157 PLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT------ 230 (327)
T ss_pred ccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee------
Confidence 99999999999999999985 346788888764 499999999999999999888755442
Q ss_pred CCCCeEEEEEeCCccEEEEEE-CCCCEEEEEECCCCe------------EEEEec-CCCCEEEEEEeCC--EEEEEEcCC
Q 001349 980 KANPVHALQVHNGLVYTASTS-LDGAAVKMWSTSNYN------------MVGSLP-TLSEVRAMVVSSE--LVYLGCKGG 1043 (1094)
Q Consensus 980 h~~~V~sl~fs~~~~~las~s-~Dg~~I~iwd~~~~~------------~~~~~~-~~~~v~~l~~spd--~l~sgs~dg 1043 (1094)
..||++.+++|....++.++ .+.+-|.-=+.+.|+ .+..++ |-++|++++|+|+ ..++|++||
T Consensus 231 -e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG 309 (327)
T KOG0643|consen 231 -ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDG 309 (327)
T ss_pred -cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCc
Confidence 36899999999766666653 222223222333332 223334 6689999999999 688999999
Q ss_pred eEEEEECCC
Q 001349 1044 TVEIWDQKR 1052 (1094)
Q Consensus 1044 ~I~vwd~~t 1052 (1094)
.|++.....
T Consensus 310 ~VR~h~Fd~ 318 (327)
T KOG0643|consen 310 YVRLHHFDS 318 (327)
T ss_pred eEEEEEecc
Confidence 999986553
No 117
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.82 E-value=7.3e-19 Score=209.61 Aligned_cols=254 Identities=19% Similarity=0.244 Sum_probs=198.6
Q ss_pred CCCcEEEEEEeCC--EEEEEE--CCCeEEEEecCCC----------cceeEEEecccCCCeEEEEEecCCCEEEEEeCCC
Q 001349 812 ENGKVLSIACFRD--KIFSGH--SDGTIKVWTGRGS----------ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDK 877 (1094)
Q Consensus 812 h~~~V~~l~fspd--~LaSgs--~Dg~I~vWd~~t~----------~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~Dg 877 (1094)
++..|.++..+|| .++||+ .||.++||+...- -.+.+.+...|.+.|+|+.|+|||++||+||+|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 3467899999998 999999 9999999976421 1245667788999999999999999999999999
Q ss_pred cEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC--CEEEEEEcCC
Q 001349 878 TARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ--GKVYCGCQDG 955 (1094)
Q Consensus 878 tI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~--~~l~sgs~Dg 955 (1094)
.|.||...... ... .|...|...-+-.|.-...+..|...|..+.|++ ..+++++.|+
T Consensus 92 ~v~iW~~~~~~---------~~~-----------~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~Dn 151 (942)
T KOG0973|consen 92 LVMIWERAEIG---------SGT-----------VFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDN 151 (942)
T ss_pred eEEEeeecccC---------Ccc-----------cccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccc
Confidence 99999987410 000 0222222222223333334445677777777774 3589999999
Q ss_pred eEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecC-------CCCEEE
Q 001349 956 AIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT-------LSEVRA 1028 (1094)
Q Consensus 956 ~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~-------~~~v~~ 1028 (1094)
+|.+||.++.+.+ ..+.+|...|..+.|+|-|.|+++-+.| ++|++|++.+....+.+.. ...+..
T Consensus 152 sViiwn~~tF~~~------~vl~~H~s~VKGvs~DP~Gky~ASqsdD-rtikvwrt~dw~i~k~It~pf~~~~~~T~f~R 224 (942)
T KOG0973|consen 152 SVIIWNAKTFELL------KVLRGHQSLVKGVSWDPIGKYFASQSDD-RTLKVWRTSDWGIEKSITKPFEESPLTTFFLR 224 (942)
T ss_pred eEEEEccccceee------eeeecccccccceEECCccCeeeeecCC-ceEEEEEcccceeeEeeccchhhCCCcceeee
Confidence 9999999998666 6788999999999999999999999877 5999999988887777762 355889
Q ss_pred EEEeCC--EEEEEE----cCCeEEEEECCCCcEEEEecccCCcceEEEEEcCC-----CC------------EEEEEeCC
Q 001349 1029 MVVSSE--LVYLGC----KGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDN-----EE------------FLVIGTSD 1085 (1094)
Q Consensus 1029 l~~spd--~l~sgs----~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spd-----g~------------~L~sgs~D 1085 (1094)
+.|||| +|+++- ...++.|.+..+.+.-..| .||.+++.++.|+|. .+ .+++|+.|
T Consensus 225 lSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~L-vGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqD 303 (942)
T KOG0973|consen 225 LSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDL-VGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQD 303 (942)
T ss_pred cccCCCcCeecchhhccCCcceeEEEecCCceeeeee-ecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCC
Confidence 999999 666642 3457999999888888888 699999999999981 11 67899999
Q ss_pred CcEEEEeC
Q 001349 1086 GRIQAWGL 1093 (1094)
Q Consensus 1086 G~I~iWdl 1093 (1094)
++|.||..
T Consensus 304 rSlSVW~T 311 (942)
T KOG0973|consen 304 RSLSVWNT 311 (942)
T ss_pred ccEEEEec
Confidence 99999974
No 118
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=3.5e-19 Score=203.11 Aligned_cols=237 Identities=20% Similarity=0.275 Sum_probs=190.3
Q ss_pred hccccccccccCcEEEEeeCCCCeEEEeCC--cceeeccc-CCCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEE
Q 001349 774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSS-ENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQ 850 (1094)
Q Consensus 774 ~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~-h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~ 850 (1094)
..+....+..+|.+|+.|..+|.|.|||.. .....+.+ |.+.|.+++|....+.+|+.||.|..+|+.... ....+
T Consensus 218 ~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~-~~~~~ 296 (484)
T KOG0305|consen 218 ELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQ-HVVST 296 (484)
T ss_pred CceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecch-hhhhh
Confidence 344556677899999999999999999987 34455566 999999999999999999999999999999873 22335
Q ss_pred ecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEE
Q 001349 851 IREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTK 930 (1094)
Q Consensus 851 l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~ 930 (1094)
+.+|...|..+.|++|+.++|+|+.|+.+.|||..... ..+....|...|..++ |+|-..
T Consensus 297 ~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~-p~~~~~~H~aAVKA~a-------wcP~q~------------ 356 (484)
T KOG0305|consen 297 LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE-PKFTFTEHTAAVKALA-------WCPWQS------------ 356 (484)
T ss_pred hhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc-ccEEEeccceeeeEee-------eCCCcc------------
Confidence 88999999999999999999999999999999995532 3444455667777776 444333
Q ss_pred EEcCCCCceEEEEeCCEEEE--EEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEE-ECCCCEEE
Q 001349 931 LLNSSKYPKCLALVQGKVYC--GCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTAST-SLDGAAVK 1007 (1094)
Q Consensus 931 l~~~~~~v~~l~~s~~~l~s--gs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~-s~Dg~~I~ 1007 (1094)
+.|++ |+.|++|++||..+|..+... .-...|.++.|++...-++++ +.....|.
T Consensus 357 ---------------~lLAsGGGs~D~~i~fwn~~~g~~i~~v-------dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~ 414 (484)
T KOG0305|consen 357 ---------------GLLATGGGSADRCIKFWNTNTGARIDSV-------DTGSQVCSLIWSKKYKELLSTHGYSENQIT 414 (484)
T ss_pred ---------------CceEEcCCCcccEEEEEEcCCCcEeccc-------ccCCceeeEEEcCCCCEEEEecCCCCCcEE
Confidence 33555 467999999999999887322 234689999999877444443 32234899
Q ss_pred EEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCC
Q 001349 1008 MWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQ 1053 (1094)
Q Consensus 1008 iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~ 1053 (1094)
||+..+.+.+..+. |...|..++++|| .+++|+.|.++++|++-..
T Consensus 415 lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 415 LWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred EEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 99999988888888 7889999999999 8999999999999998664
No 119
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=3.1e-19 Score=193.37 Aligned_cols=225 Identities=18% Similarity=0.255 Sum_probs=172.1
Q ss_pred CcEEEEeeCCCCeEEEeCC------cce-----------------eecccCCCcEEEEEEeCC---EEEEEECCCeEEEE
Q 001349 785 MVKVLSNGHDSSADFWNHR------ELV-----------------HVDSSENGKVLSIACFRD---KIFSGHSDGTIKVW 838 (1094)
Q Consensus 785 ~~~l~s~s~dg~I~vWd~~------~~~-----------------~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vW 838 (1094)
|+++|.|..|..|.|||+. .+. ....+|++.|.+++|+.+ .|||||.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 8899999999999999975 111 112469999999999974 99999999999999
Q ss_pred ecCCCcceeEEEecccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCC
Q 001349 839 TGRGSILHLIQQIREHTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQG 917 (1094)
Q Consensus 839 d~~t~~~~~~~~l~~H~~~V~sv~fsp-dg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg 917 (1094)
|+.++ ++..++..|++.|.++.|+| .+.+|++||.|++|.+.|.+... ..-.. |.-
T Consensus 272 D~~~g--~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~-~s~~~------------------wk~-- 328 (463)
T KOG0270|consen 272 DVDTG--KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPS-NSGKE------------------WKF-- 328 (463)
T ss_pred EcCCC--CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcc-ccCce------------------EEe--
Confidence 99999 78888989999999999999 68899999999999999998521 00000 111
Q ss_pred CeEEEEEeCCeEEEEcCCCCceEEEEe---CCEEEEEEcCCeEEEEECCCC-ceeEEeccceeecCCCCCeEEEEEeCCc
Q 001349 918 AGIKVHLRNGKTKLLNSSKYPKCLALV---QGKVYCGCQDGAIQEIDLATG-TFATIQTGHRKLLGKANPVHALQVHNGL 993 (1094)
Q Consensus 918 ~~l~~~~~~g~i~l~~~~~~v~~l~~s---~~~l~sgs~Dg~I~iwDl~~~-~~~~~~~~~~~~~~h~~~V~sl~fs~~~ 993 (1094)
.+.|-.++|. +..+++++.||+|+.+|+|+. +++ .++..|..+|.+++++...
T Consensus 329 -----------------~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~v------wt~~AHd~~ISgl~~n~~~ 385 (463)
T KOG0270|consen 329 -----------------DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPV------WTLKAHDDEISGLSVNIQT 385 (463)
T ss_pred -----------------ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCce------eEEEeccCCcceEEecCCC
Confidence 2223333333 245889999999999999986 444 5778899999999998654
Q ss_pred -cEEEEEECCCCEEEEEECCCCeEEEEecC---CCCEEEEEEeCC---EEEEEEcCCeEEEEECCCCcEE
Q 001349 994 -VYTASTSLDGAAVKMWSTSNYNMVGSLPT---LSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIRI 1056 (1094)
Q Consensus 994 -~~las~s~Dg~~I~iwd~~~~~~~~~~~~---~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~~~~ 1056 (1094)
.++++++.|+ .|++|++....+.....| -+...|+++.|+ .++.|+..+.++|||+.+...+
T Consensus 386 p~~l~t~s~d~-~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 386 PGLLSTASTDK-VVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred Ccceeeccccc-eEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 3566667775 999999975444322222 233667778887 6888898999999999876644
No 120
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.82 E-value=9.6e-19 Score=190.03 Aligned_cols=277 Identities=15% Similarity=0.166 Sum_probs=206.3
Q ss_pred eeecccCCCcEEEEEEeCC----EEEEEECCCeEEEEecCCC--cceeEEEecccCCCeEEEEEec-CCCEEEEEeCCCc
Q 001349 806 VHVDSSENGKVLSIACFRD----KIFSGHSDGTIKVWTGRGS--ILHLIQQIREHTKAVTGLAILQ-SGEMLYSGSLDKT 878 (1094)
Q Consensus 806 ~~~~~~h~~~V~~l~fspd----~LaSgs~Dg~I~vWd~~t~--~~~~~~~l~~H~~~V~sv~fsp-dg~~LaSgs~Dgt 878 (1094)
..+...|.+.|++++|+|. ++++|+.-|+|-+||+.+. ...-+..+..|..+|.++.|+| +...+++.|.||+
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence 4556678999999999993 8999999999999999632 2245667788999999999999 6678999999999
Q ss_pred EEEEECCCCceEEEEecc-cCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC-------------CCCceEEEEe
Q 001349 879 ARVWSIGNEEIHCVQVHD-IKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS-------------SKYPKCLALV 944 (1094)
Q Consensus 879 I~vWdi~~~~~~~~~~~~-~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~-------------~~~v~~l~~s 944 (1094)
|+.-|++++....+.... ....+.++. |+.+...+..+..-|...+|++ ...|++++++
T Consensus 259 iR~~D~~~~i~e~v~s~~~d~~~fs~~d-------~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~N 331 (498)
T KOG4328|consen 259 IRLQDFEGNISEEVLSLDTDNIWFSSLD-------FSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALN 331 (498)
T ss_pred eeeeeecchhhHHHhhcCccceeeeecc-------ccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecC
Confidence 999999986532222221 122233333 6666666666655567777764 4578999998
Q ss_pred C---CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEEC----CCCeEE
Q 001349 945 Q---GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWST----SNYNMV 1017 (1094)
Q Consensus 945 ~---~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~----~~~~~~ 1017 (1094)
| -.+++++.|++.+|||++.-..... +......|...|.+..|+|.+-.+++.+.|+ .|+|||. ....+.
T Consensus 332 P~~p~~laT~s~D~T~kIWD~R~l~~K~s--p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~-~IRv~dss~~sa~~~p~ 408 (498)
T KOG4328|consen 332 PVCPWFLATASLDQTAKIWDLRQLRGKAS--PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDN-EIRVFDSSCISAKDEPL 408 (498)
T ss_pred CCCchheeecccCcceeeeehhhhcCCCC--cceecccccceeeeeEEcCCCCceEeeccCC-ceEEeecccccccCCcc
Confidence 6 4599999999999999986433211 1134467889999999999888899999996 9999998 344566
Q ss_pred EEecCCC----C--EEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEE-EEEcCCCC-EEEEEeCCCc
Q 001349 1018 GSLPTLS----E--VRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQC-MALDDNEE-FLVIGTSDGR 1087 (1094)
Q Consensus 1018 ~~~~~~~----~--v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~-l~~Spdg~-~L~sgs~DG~ 1087 (1094)
.++.|.. + .....|.|+ ++++|-.-..|-|+|-..++.+..+.......|.+ ..|+|-+. +++.++..|.
T Consensus 409 ~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gk 488 (498)
T KOG4328|consen 409 GTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGK 488 (498)
T ss_pred ceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccce
Confidence 6666532 2 335678898 78899888999999999999888874344435554 48999888 4455556789
Q ss_pred EEEEe
Q 001349 1088 IQAWG 1092 (1094)
Q Consensus 1088 I~iWd 1092 (1094)
|+||-
T Consensus 489 i~vft 493 (498)
T KOG4328|consen 489 IYVFT 493 (498)
T ss_pred EEEEe
Confidence 99984
No 121
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.81 E-value=2.7e-19 Score=196.11 Aligned_cols=237 Identities=21% Similarity=0.294 Sum_probs=177.6
Q ss_pred eEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc--eEEEEec--ccCccceeeeecCceEEEeeCCCeEEE
Q 001349 847 LIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE--IHCVQVH--DIKDQIQNLAVSNSILCFIPQGAGIKV 922 (1094)
Q Consensus 847 ~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~--~~~~~~~--~~~~~V~~v~~~~~~~~fspdg~~l~~ 922 (1094)
.-..+++|+..|.++++.|.|..|+|||.|.+|++||+.... .+.+... .....|.++. |++.|..+++
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~-------ys~Tg~~iLv 231 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQ-------YSVTGDQILV 231 (641)
T ss_pred ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceee-------ecCCCCeEEE
Confidence 345678899999999999999999999999999999998654 1111111 1234567776 8999999988
Q ss_pred EEeCCeEEEEcCC------------------------CCceEEEEeC---CEEEEEEcCCeEEEEECCCCceeEEeccce
Q 001349 923 HLRNGKTKLLNSS------------------------KYPKCLALVQ---GKVYCGCQDGAIQEIDLATGTFATIQTGHR 975 (1094)
Q Consensus 923 ~~~~g~i~l~~~~------------------------~~v~~l~~s~---~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~ 975 (1094)
.+.....++++.. ..++|..|+| +.+++++.||++++||+.+.+.....-.+.
T Consensus 232 vsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k 311 (641)
T KOG0772|consen 232 VSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTK 311 (641)
T ss_pred EecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeec
Confidence 8888777777632 2466777776 459999999999999998765432221123
Q ss_pred eecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCe--EEEEec--CC--CCEEEEEEeCC--EEEEEEcCCeEEE
Q 001349 976 KLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN--MVGSLP--TL--SEVRAMVVSSE--LVYLGCKGGTVEI 1047 (1094)
Q Consensus 976 ~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~--~~~~~~--~~--~~v~~l~~spd--~l~sgs~dg~I~v 1047 (1094)
...+..-++++.+|++++.++|++..|| .|.+|+..+.. +...+. |. ..|+++.||+| +|++-+.|+++++
T Consensus 312 ~~~g~Rv~~tsC~~nrdg~~iAagc~DG-SIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKv 390 (641)
T KOG0772|consen 312 PAGGKRVPVTSCAWNRDGKLIAAGCLDG-SIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKV 390 (641)
T ss_pred cCCCcccCceeeecCCCcchhhhcccCC-ceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceee
Confidence 3345556899999999999999999997 99999986532 222222 43 48999999998 8999999999999
Q ss_pred EECCCCc-EEEEecccC--CcceEEEEEcCCCCEEEEEeC------CCcEEEEe
Q 001349 1048 WDQKRQI-RIETLQTGT--SGKVQCMALDDNEEFLVIGTS------DGRIQAWG 1092 (1094)
Q Consensus 1048 wd~~t~~-~~~~l~~~h--~~~I~~l~~Spdg~~L~sgs~------DG~I~iWd 1092 (1094)
||++..+ ++... .+- .-.-+.++||||.++|+||++ .|++.+||
T Consensus 391 WDLrq~kkpL~~~-tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d 443 (641)
T KOG0772|consen 391 WDLRQFKKPLNVR-TGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFD 443 (641)
T ss_pred eeccccccchhhh-cCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEe
Confidence 9998754 44333 222 225678999999999999975 46777776
No 122
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.81 E-value=7.8e-18 Score=184.32 Aligned_cols=311 Identities=14% Similarity=0.195 Sum_probs=234.6
Q ss_pred HHHhhhccccccccccCcEEEEeeCCC--------CeEEEeCC--cceeecccCCCcEEEEEEeCC----EEEE--EECC
Q 001349 769 MKGLRELRKYSPLAFEMVKVLSNGHDS--------SADFWNHR--ELVHVDSSENGKVLSIACFRD----KIFS--GHSD 832 (1094)
Q Consensus 769 ~~~~~~~~~~~~~~~d~~~l~s~s~dg--------~I~vWd~~--~~~~~~~~h~~~V~~l~fspd----~LaS--gs~D 832 (1094)
+-+|..-+...++.||--++++|..-| .+++||.. +.++++-.....|.|++|++- ++.. -+.+
T Consensus 100 y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~ 179 (626)
T KOG2106|consen 100 YLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNP 179 (626)
T ss_pred ccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCc
Confidence 334555566778888888888876655 48999965 345556567788999999972 4433 3566
Q ss_pred CeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceE-EEEec--ccCccceeeeecCc
Q 001349 833 GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIH-CVQVH--DIKDQIQNLAVSNS 909 (1094)
Q Consensus 833 g~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~-~~~~~--~~~~~V~~v~~~~~ 909 (1094)
..+.|||...+ ......+.-...|....|+|.+..++.....|.+.+|+.+++.+. ....+ ..+..|.++.
T Consensus 180 h~lSVWdWqk~--~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~---- 253 (626)
T KOG2106|consen 180 HMLSVWDWQKK--AKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVT---- 253 (626)
T ss_pred cccchhhchhh--hccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEE----
Confidence 78999999877 555666666788999999995544444445588999999988632 22222 2335677776
Q ss_pred eEEEeeCCCeEEEEEeCCeEEEEcC------------CCCceEEEEe-CCEEEEEEcCCeEEEEECCCCcee--------
Q 001349 910 ILCFIPQGAGIKVHLRNGKTKLLNS------------SKYPKCLALV-QGKVYCGCQDGAIQEIDLATGTFA-------- 968 (1094)
Q Consensus 910 ~~~fspdg~~l~~~~~~g~i~l~~~------------~~~v~~l~~s-~~~l~sgs~Dg~I~iwDl~~~~~~-------- 968 (1094)
|.++|. +++++.+|.+.+|+. .+.|.++..- +|.|++|+.|..|..||-.-.+..
T Consensus 254 ---F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~ 329 (626)
T KOG2106|consen 254 ---FLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQF 329 (626)
T ss_pred ---EcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhc
Confidence 888887 457778888888874 4567777665 578999999999999983211100
Q ss_pred ----EEecc----------------------ceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecC
Q 001349 969 ----TIQTG----------------------HRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT 1022 (1094)
Q Consensus 969 ----~~~~~----------------------~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~ 1022 (1094)
.+.++ .....+|......++.+|+...+++++.|+ .+++|+ ..++..+..-
T Consensus 330 G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk-~v~lW~--~~k~~wt~~~ 406 (626)
T KOG2106|consen 330 GPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDK-HVRLWN--DHKLEWTKII 406 (626)
T ss_pred CCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcc-eEEEcc--CCceeEEEEe
Confidence 00000 023467888899999999999999999996 999999 6777777778
Q ss_pred CCCEEEEEEeCC-EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1023 LSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1023 ~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
..+..++.|+|. .++.|+..|...|.|.++...+... .. ..+++.+.|+|+|.+|+.|+.|+.|+||.++
T Consensus 407 ~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~-~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs 477 (626)
T KOG2106|consen 407 EDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIH-TD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVS 477 (626)
T ss_pred cCceeEeeccCcceEEEeeccceEEEEecccceeEEEE-ec-CCceEEEEEcCCCCEEEEecCCCeEEEEEEC
Confidence 889999999998 7999999999999999996666555 34 6799999999999999999999999999763
No 123
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=1.1e-18 Score=180.48 Aligned_cols=251 Identities=16% Similarity=0.264 Sum_probs=198.4
Q ss_pred EEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEec------CCC-------------
Q 001349 787 KVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTG------RGS------------- 843 (1094)
Q Consensus 787 ~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~------~t~------------- 843 (1094)
.+.+++.|.+.+||.+. .++..+.||.+.|++|.|++. ++++++.|++-.||.. ...
T Consensus 162 i~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e 241 (481)
T KOG0300|consen 162 ICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEE 241 (481)
T ss_pred ceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhh
Confidence 78899999999999998 678889999999999999985 9999999999999962 110
Q ss_pred -------------------cceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceee
Q 001349 844 -------------------ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNL 904 (1094)
Q Consensus 844 -------------------~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v 904 (1094)
.-.++..+.+|.+.|.+..|-..|+.++++|.|.+..+||+++|++.. ....|....+.+
T Consensus 242 ~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~-~LtGHd~ELtHc 320 (481)
T KOG0300|consen 242 HSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVN-ILTGHDSELTHC 320 (481)
T ss_pred cccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceec-cccCcchhcccc
Confidence 013566788999999999999999999999999999999999996322 223345555555
Q ss_pred eecCceEEEeeCCCeEEEEEeCCeEEEEcCC-------------CCceEEEEe-CCEEEEEEcCCeEEEEECCCCceeEE
Q 001349 905 AVSNSILCFIPQGAGIKVHLRNGKTKLLNSS-------------KYPKCLALV-QGKVYCGCQDGAIQEIDLATGTFATI 970 (1094)
Q Consensus 905 ~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~-------------~~v~~l~~s-~~~l~sgs~Dg~I~iwDl~~~~~~~~ 970 (1094)
. -.|..+.+++.+.|.+.++|+.. ..|++..|. ++++++|+.|.+|++||+++.....
T Consensus 321 s-------tHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRspl- 392 (481)
T KOG0300|consen 321 S-------THPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPL- 392 (481)
T ss_pred c-------cCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCcc-
Confidence 4 67888899999999999999853 456666665 5679999999999999999865432
Q ss_pred eccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec------CCCCEEEEEEeCC----EEEEEE
Q 001349 971 QTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP------TLSEVRAMVVSSE----LVYLGC 1040 (1094)
Q Consensus 971 ~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~------~~~~v~~l~~spd----~l~sgs 1040 (1094)
.+ .....+++.++++.++..++.- .|++.|++||+..... ..++ |...|+|++|..+ -+++++
T Consensus 393 ----AT-IRtdS~~NRvavs~g~~iIAiP-hDNRqvRlfDlnG~Rl-aRlPrtsRqgHrRMV~c~AW~eehp~cnLftcG 465 (481)
T KOG0300|consen 393 ----AT-IRTDSPANRVAVSKGHPIIAIP-HDNRQVRLFDLNGNRL-ARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCG 465 (481)
T ss_pred ----ee-eecCCccceeEeecCCceEEec-cCCceEEEEecCCCcc-ccCCcccccccceeeeeeeccccCccccccccc
Confidence 11 1234688999999888776654 5668999999975443 2222 5667999999877 588899
Q ss_pred cCCeEEEEECCCC
Q 001349 1041 KGGTVEIWDQKRQ 1053 (1094)
Q Consensus 1041 ~dg~I~vwd~~t~ 1053 (1094)
.|..+.=|++...
T Consensus 466 FDR~v~gW~in~p 478 (481)
T KOG0300|consen 466 FDRMVAGWKINTP 478 (481)
T ss_pred ccceeeeeEeccc
Confidence 9999999998754
No 124
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.81 E-value=1.8e-19 Score=196.31 Aligned_cols=229 Identities=22% Similarity=0.315 Sum_probs=190.3
Q ss_pred ccccccccccCcEEEEeeCCCCeEEEeCCcc----eeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeE
Q 001349 775 LRKYSPLAFEMVKVLSNGHDSSADFWNHREL----VHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLI 848 (1094)
Q Consensus 775 ~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~~----~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~ 848 (1094)
+++.+-+.+||+.+++||.-.++.|||+... ...+....-..++++.+|| ..++++.||.|.|||+.+. ..+
T Consensus 467 yiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq--~~V 544 (705)
T KOG0639|consen 467 YIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ--TLV 544 (705)
T ss_pred ceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc--eee
Confidence 5667889999999999999999999998732 2223333345678889997 8889999999999999998 899
Q ss_pred EEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCe
Q 001349 849 QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGK 928 (1094)
Q Consensus 849 ~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~ 928 (1094)
+.|+||++.+.||.+++||..|.||+-|.+||-||++++ +....+++.+.|.++. ++|++.+++++..++
T Consensus 545 rqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlreg--rqlqqhdF~SQIfSLg-------~cP~~dWlavGMens- 614 (705)
T KOG0639|consen 545 RQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREG--RQLQQHDFSSQIFSLG-------YCPTGDWLAVGMENS- 614 (705)
T ss_pred ecccCCCCCceeEEecCCCceeecCCCccceeehhhhhh--hhhhhhhhhhhheecc-------cCCCccceeeecccC-
Confidence 999999999999999999999999999999999999997 5666677788888887 888888765555544
Q ss_pred EEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEE
Q 001349 929 TKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKM 1008 (1094)
Q Consensus 929 i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~i 1008 (1094)
.+.+........ ..+.-|...|.++.|.+-|.++++.+.|+ .+..
T Consensus 615 ---------------------------~vevlh~skp~k-------yqlhlheScVLSlKFa~cGkwfvStGkDn-lLna 659 (705)
T KOG0639|consen 615 ---------------------------NVEVLHTSKPEK-------YQLHLHESCVLSLKFAYCGKWFVSTGKDN-LLNA 659 (705)
T ss_pred ---------------------------cEEEEecCCccc-------eeecccccEEEEEEecccCceeeecCchh-hhhh
Confidence 444444332221 34456788999999999999999999996 9999
Q ss_pred EECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEEC
Q 001349 1009 WSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQ 1050 (1094)
Q Consensus 1009 wd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~ 1050 (1094)
|.+.-|..+...+..+.|.++.+|.| ++++|+.|..-.||.+
T Consensus 660 wrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 660 WRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 99999998888888899999999887 9999999988888864
No 125
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=3.1e-18 Score=178.31 Aligned_cols=230 Identities=15% Similarity=0.213 Sum_probs=171.5
Q ss_pred ccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 001349 810 SSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNE 887 (1094)
Q Consensus 810 ~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~ 887 (1094)
......|+++.|+|. .|+.+++||++++||+... .....+ .|..++.+++|.+ ...+++|+.||.|+.+|++++
T Consensus 10 npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~--~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~ 85 (323)
T KOG1036|consen 10 NPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN--SLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTG 85 (323)
T ss_pred CCChhceeeEEEcCcCCcEEEEeccCcEEEEeccch--hhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCC
Confidence 345788999999974 7777889999999999987 344444 5999999999986 567899999999999999997
Q ss_pred ceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEe--CCEEEEEEcCCeEEEEECCCC
Q 001349 888 EIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALV--QGKVYCGCQDGAIQEIDLATG 965 (1094)
Q Consensus 888 ~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s--~~~l~sgs~Dg~I~iwDl~~~ 965 (1094)
+. .....|..++ +|+.+. .+.+++|+.|++|++||.++.
T Consensus 86 ~~--~~igth~~~i-------------------------------------~ci~~~~~~~~vIsgsWD~~ik~wD~R~~ 126 (323)
T KOG1036|consen 86 NE--DQIGTHDEGI-------------------------------------RCIEYSYEVGCVISGSWDKTIKFWDPRNK 126 (323)
T ss_pred cc--eeeccCCCce-------------------------------------EEEEeeccCCeEEEcccCccEEEEecccc
Confidence 42 2222334444 444444 357999999999999999974
Q ss_pred ceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec---CCCCEEEEEEeCC--EEEEEE
Q 001349 966 TFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP---TLSEVRAMVVSSE--LVYLGC 1040 (1094)
Q Consensus 966 ~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~---~~~~v~~l~~spd--~l~sgs 1040 (1094)
.....+. ....|.++....+.. +.|..| +.|.+||+++........ -.-.+.++++-|+ .++++|
T Consensus 127 ~~~~~~d-------~~kkVy~~~v~g~~L--vVg~~~-r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sS 196 (323)
T KOG1036|consen 127 VVVGTFD-------QGKKVYCMDVSGNRL--VVGTSD-RKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSS 196 (323)
T ss_pred ccccccc-------cCceEEEEeccCCEE--EEeecC-ceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEe
Confidence 4432221 224788887765543 333344 699999999865443222 3456889999996 899999
Q ss_pred cCCeEEEEECCCC----cEEEEecccCCc---------ceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1041 KGGTVEIWDQKRQ----IRIETLQTGTSG---------KVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1041 ~dg~I~vwd~~t~----~~~~~l~~~h~~---------~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
-||.|.+=.++.. ..-..|+ .|.. +|++|+|+|-...|+||+.||.|.+||+
T Consensus 197 ieGRVavE~~d~s~~~~skkyaFk-CHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~ 261 (323)
T KOG1036|consen 197 IEGRVAVEYFDDSEEAQSKKYAFK-CHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDL 261 (323)
T ss_pred ecceEEEEccCCchHHhhhceeEE-eeecccCCceEEEEeceeEeccccceEEecCCCceEEEccC
Confidence 9999988776654 3334442 3432 7999999999999999999999999996
No 126
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1e-17 Score=190.07 Aligned_cols=273 Identities=21% Similarity=0.258 Sum_probs=213.8
Q ss_pred cccccccCcEEEEeeCCCCeEEEeCCc---ceeecccC-CCcEEEEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEec
Q 001349 778 YSPLAFEMVKVLSNGHDSSADFWNHRE---LVHVDSSE-NGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIR 852 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg~I~vWd~~~---~~~~~~~h-~~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~ 852 (1094)
..+++.+.+.+|.+-.||.|.+|++.. ...++.+| +..|.+++|++. .|+|.+.+|+|.-||+.+. +....+.
T Consensus 30 slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~l--k~~~~~d 107 (691)
T KOG2048|consen 30 SLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTL--KQKYNID 107 (691)
T ss_pred EEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccC--ceeEEec
Confidence 445556778899999999999999982 33445554 578999999965 9999999999999999999 7888888
Q ss_pred ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecc-cCccceeeeecCceEEEeeCCCeEEEEEeCCeEEE
Q 001349 853 EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHD-IKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKL 931 (1094)
Q Consensus 853 ~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~-~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l 931 (1094)
...+.||+++.+|.+..++.|++||.+...++..+.+....... .++.+.++. |.|++.
T Consensus 108 ~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLsls-------w~~~~~------------- 167 (691)
T KOG2048|consen 108 SNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLS-------WNPTGT------------- 167 (691)
T ss_pred CCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEE-------ecCCcc-------------
Confidence 88999999999999999999999998888888887644433332 235566655 555554
Q ss_pred EcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccc-eee-cCCCCCeEEEEEeCCccEEEEEECCCCEEEEE
Q 001349 932 LNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGH-RKL-LGKANPVHALQVHNGLVYTASTSLDGAAVKMW 1009 (1094)
Q Consensus 932 ~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~-~~~-~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iw 1009 (1094)
+++.|+.||.|++||..++......... ..+ .+...-|.++.|-.++. +++|...| +|++|
T Consensus 168 ---------------~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I~sgDS~G-~V~FW 230 (691)
T KOG2048|consen 168 ---------------KIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST-IASGDSAG-TVTFW 230 (691)
T ss_pred ---------------EEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc-EEEecCCc-eEEEE
Confidence 4899999999999999999877532210 011 11233477888876654 56776666 99999
Q ss_pred ECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcE---EEEecccCCcceEEEEEcCCCCEEEEEe
Q 001349 1010 STSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIR---IETLQTGTSGKVQCMALDDNEEFLVIGT 1083 (1094)
Q Consensus 1010 d~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~---~~~l~~~h~~~I~~l~~Spdg~~L~sgs 1083 (1094)
|...+.+++.+. |...|.+++..++ ++++++-|+.|.-|...+++. .......|...|.+++..++ .+++|+
T Consensus 231 d~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG 308 (691)
T KOG2048|consen 231 DSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGG 308 (691)
T ss_pred cccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecc
Confidence 999999999988 8899999999876 999999999999888776643 23333578889999999876 899999
Q ss_pred CCCcEEEE
Q 001349 1084 SDGRIQAW 1091 (1094)
Q Consensus 1084 ~DG~I~iW 1091 (1094)
.|+++.+-
T Consensus 309 ~d~~l~i~ 316 (691)
T KOG2048|consen 309 RDFTLAIC 316 (691)
T ss_pred eeeEEEEc
Confidence 99988763
No 127
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.8e-17 Score=164.27 Aligned_cols=240 Identities=20% Similarity=0.267 Sum_probs=182.4
Q ss_pred CCCcEEEEEEeCC--EEEEEECCCeEEEEecC------CC----c---ceeEEEecccCCCeEEEEEecCCCEEEEEeCC
Q 001349 812 ENGKVLSIACFRD--KIFSGHSDGTIKVWTGR------GS----I---LHLIQQIREHTKAVTGLAILQSGEMLYSGSLD 876 (1094)
Q Consensus 812 h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~------t~----~---~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~D 876 (1094)
....|.+++|+|. +.+.|+...+.+|-... .+ . ....+.-+.|.+.|.|.+|+|+|.+|++||.|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence 4568999999996 88999999999986432 11 0 11223345689999999999999999999999
Q ss_pred CcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC-----CE-EEE
Q 001349 877 KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ-----GK-VYC 950 (1094)
Q Consensus 877 gtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~-----~~-l~s 950 (1094)
++|++.-++...... .|..+ .+--|.+.|+.++|-+ +. +++
T Consensus 111 k~ik~l~fn~dt~~~------------------------~g~dl---------e~nmhdgtirdl~fld~~~s~~~il~s 157 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNA------------------------TGHDL---------EFNMHDGTIRDLAFLDDPESGGAILAS 157 (350)
T ss_pred ceEEEEecccccccc------------------------cCcce---------eeeecCCceeeeEEecCCCcCceEEEe
Confidence 999998776532100 00000 0111223344444432 22 333
Q ss_pred -EEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec---C----
Q 001349 951 -GCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP---T---- 1022 (1094)
Q Consensus 951 -gs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~---~---- 1022 (1094)
|..|..|++-|..+|+.. ..+.||++-|.++ ++-++-.+++++.|. +|++||++-..++.++. |
T Consensus 158 ~gagdc~iy~tdc~~g~~~------~a~sghtghilal-yswn~~m~~sgsqdk-tirfwdlrv~~~v~~l~~~~~~~gl 229 (350)
T KOG0641|consen 158 AGAGDCKIYITDCGRGQGF------HALSGHTGHILAL-YSWNGAMFASGSQDK-TIRFWDLRVNSCVNTLDNDFHDGGL 229 (350)
T ss_pred cCCCcceEEEeecCCCCcc------eeecCCcccEEEE-EEecCcEEEccCCCc-eEEEEeeeccceeeeccCcccCCCc
Confidence 455777888888888876 5677888888776 355677889999985 99999999999988876 2
Q ss_pred -CCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1023 -LSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1023 -~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
.+.|.++++.|. ++++|-.|....+||++.+..++.+ ..|...|.++.|||...++++++.|..|++-|+
T Consensus 230 essavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f-~phsadir~vrfsp~a~yllt~syd~~ikltdl 302 (350)
T KOG0641|consen 230 ESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRF-HPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDL 302 (350)
T ss_pred ccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeee-CCCccceeEEEeCCCceEEEEecccceEEEeec
Confidence 256889999988 7899999999999999999999999 589999999999999999999999999999876
No 128
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=6.5e-18 Score=197.34 Aligned_cols=269 Identities=19% Similarity=0.229 Sum_probs=211.4
Q ss_pred ccccccCcEEEEeeCCCCeEEEeCCc---ceeecccCCCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccC
Q 001349 779 SPLAFEMVKVLSNGHDSSADFWNHRE---LVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHT 855 (1094)
Q Consensus 779 ~~~~~d~~~l~s~s~dg~I~vWd~~~---~~~~~~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~ 855 (1094)
..+.++|..|++++.||.|++|+... .-....-|...|.+++...++|++|+.+++|.+|.+..+. .-..+...+
T Consensus 19 i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~--~~~iL~Rft 96 (933)
T KOG1274|consen 19 ICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGE--EDTILARFT 96 (933)
T ss_pred EEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCC--ccceeeeee
Confidence 45667899999999999999998752 1222333888999999999999999999999999999883 333444567
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCC
Q 001349 856 KAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS 935 (1094)
Q Consensus 856 ~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~ 935 (1094)
-++..++|+.+|++++.||+|-.|++-++.+.. .......|+.+|.++. |.|++..
T Consensus 97 lp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s-~~~~lrgh~apVl~l~-------~~p~~~f---------------- 152 (933)
T KOG1274|consen 97 LPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSS-QEKVLRGHDAPVLQLS-------YDPKGNF---------------- 152 (933)
T ss_pred ccceEEEEecCCcEEEeecCceeEEEEeccccc-hheeecccCCceeeee-------EcCCCCE----------------
Confidence 789999999999999999999999999998864 3444456788888888 8888775
Q ss_pred CCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCC--CCCeEEEEEeCCccEEEEEECCCCEEEEEECCC
Q 001349 936 KYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGK--ANPVHALQVHNGLVYTASTSLDGAAVKMWSTSN 1013 (1094)
Q Consensus 936 ~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h--~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~ 1013 (1094)
+++.+.||.|++||+.++.....+.+....... ...+..++|+|++..++..+.|+ .|++|+..+
T Consensus 153 ------------LAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~-~Vkvy~r~~ 219 (933)
T KOG1274|consen 153 ------------LAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDN-TVKVYSRKG 219 (933)
T ss_pred ------------EEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCC-eEEEEccCC
Confidence 777888999999999988877555433222221 35677899999977777777786 999999999
Q ss_pred CeEEEEec---CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcE
Q 001349 1014 YNMVGSLP---TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRI 1088 (1094)
Q Consensus 1014 ~~~~~~~~---~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I 1088 (1094)
+.....+. +...+..+.|+|+ ||++++.||.|.|||+++-.. + .....|++++|.|+++.+-.-...|+.
T Consensus 220 we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-~----~~~~~Vc~~aw~p~~n~it~~~~~g~~ 294 (933)
T KOG1274|consen 220 WELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-H----EFKRAVCCEAWKPNANAITLITALGTL 294 (933)
T ss_pred ceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-c----cccceeEEEecCCCCCeeEEEeecccc
Confidence 99888887 3455999999998 999999999999999998322 1 124579999999999877665555554
Q ss_pred EEE
Q 001349 1089 QAW 1091 (1094)
Q Consensus 1089 ~iW 1091 (1094)
.+|
T Consensus 295 ~~~ 297 (933)
T KOG1274|consen 295 GVS 297 (933)
T ss_pred ccC
Confidence 443
No 129
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=1.8e-19 Score=206.40 Aligned_cols=235 Identities=14% Similarity=0.198 Sum_probs=186.6
Q ss_pred cccccccCcEEEEeeCCCCeEEEeCCc-----ceeecccCCCcEEEEEEeC---CEEEEEECCCeEEEEecCCCcceeEE
Q 001349 778 YSPLAFEMVKVLSNGHDSSADFWNHRE-----LVHVDSSENGKVLSIACFR---DKIFSGHSDGTIKVWTGRGSILHLIQ 849 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg~I~vWd~~~-----~~~~~~~h~~~V~~l~fsp---d~LaSgs~Dg~I~vWd~~t~~~~~~~ 849 (1094)
..+-+++.++|||++..|.|.+||+.. .+..+..|+..|+++.|++ ++|+|||.||+|++||++.. +...
T Consensus 93 VkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~--~S~~ 170 (839)
T KOG0269|consen 93 VKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK--KSKS 170 (839)
T ss_pred cccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecc--cccc
Confidence 344477899999999999999999973 4557889999999999996 59999999999999999988 6788
Q ss_pred EecccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCe
Q 001349 850 QIREHTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGK 928 (1094)
Q Consensus 850 ~l~~H~~~V~sv~fsp-dg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~ 928 (1094)
++.+....|..|.|+| .+.+++++.+.|.+++||++.......+...|.++|.++. |+|++.+
T Consensus 171 t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~n-------whPnr~~--------- 234 (839)
T KOG0269|consen 171 TFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLN-------WHPNREW--------- 234 (839)
T ss_pred cccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEe-------ecCCCce---------
Confidence 8888899999999999 7899999999999999999986644455556778888877 7775553
Q ss_pred EEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccE-EEEEE-CCCCEE
Q 001349 929 TKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVY-TASTS-LDGAAV 1006 (1094)
Q Consensus 929 i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~-las~s-~Dg~~I 1006 (1094)
|++|+.|+.|++||+.++...... ......+|..+.|-|...+ +++++ .++..|
T Consensus 235 -------------------lATGGRDK~vkiWd~t~~~~~~~~-----tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV 290 (839)
T KOG0269|consen 235 -------------------LATGGRDKMVKIWDMTDSRAKPKH-----TINTIAPVGRVKWRPARSYHLATCSMVVDTSV 290 (839)
T ss_pred -------------------eeecCCCccEEEEeccCCCcccee-----EEeecceeeeeeeccCccchhhhhhccccceE
Confidence 899999999999999876543211 1122368999999887554 34433 234589
Q ss_pred EEEECCCC-eEEEEec-CCCCEEEEEEeCC---EEEEEEcCCeEEEEECCCCc
Q 001349 1007 KMWSTSNY-NMVGSLP-TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQI 1054 (1094)
Q Consensus 1007 ~iwd~~~~-~~~~~~~-~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~~ 1054 (1094)
+|||++.. -+..++. |...++.++|... .+.+++.||+|.--.++++.
T Consensus 291 ~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 291 HVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred EEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence 99999864 4556666 8888999999762 89999999998766555543
No 130
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.80 E-value=7.3e-19 Score=191.63 Aligned_cols=268 Identities=15% Similarity=0.200 Sum_probs=208.5
Q ss_pred ccccccCcEEEEeeCCCCeEEEeCCcce-----eec--ccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEE
Q 001349 779 SPLAFEMVKVLSNGHDSSADFWNHRELV-----HVD--SSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQ 849 (1094)
Q Consensus 779 ~~~~~d~~~l~s~s~dg~I~vWd~~~~~-----~~~--~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~ 849 (1094)
..++...++++||| .|.|+|||+.... ..+ ......|.++..+|| .|++|++-.++.|||+.........
T Consensus 425 vtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprika 503 (705)
T KOG0639|consen 425 VTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKA 503 (705)
T ss_pred EEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhh
Confidence 33444566777765 5889999997321 111 123567888888887 8999999999999999877444444
Q ss_pred EecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeE
Q 001349 850 QIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKT 929 (1094)
Q Consensus 850 ~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i 929 (1094)
.+..-.-...+++.+||.+..+++..||.|.|||+.+.. .......|.+.+.++. +++||.
T Consensus 504 eltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~-~VrqfqGhtDGascId-------is~dGt----------- 564 (705)
T KOG0639|consen 504 ELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTDGASCID-------ISKDGT----------- 564 (705)
T ss_pred hcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce-eeecccCCCCCceeEE-------ecCCCc-----------
Confidence 454445567889999999999999999999999999853 3344445666666666 666665
Q ss_pred EEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEE
Q 001349 930 KLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMW 1009 (1094)
Q Consensus 930 ~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iw 1009 (1094)
+|.+|+-|++|+.||++++..+.. ......|.++.++|++.+++.|-.++ .+.+.
T Consensus 565 -----------------klWTGGlDntvRcWDlregrqlqq-------hdF~SQIfSLg~cP~~dWlavGMens-~vevl 619 (705)
T KOG0639|consen 565 -----------------KLWTGGLDNTVRCWDLREGRQLQQ-------HDFSSQIFSLGYCPTGDWLAVGMENS-NVEVL 619 (705)
T ss_pred -----------------eeecCCCccceeehhhhhhhhhhh-------hhhhhhheecccCCCccceeeecccC-cEEEE
Confidence 488999999999999999976532 12346799999999999999997775 77777
Q ss_pred ECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCc
Q 001349 1010 STSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGR 1087 (1094)
Q Consensus 1010 d~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~ 1087 (1094)
........+--.|.+-|.++.|.+- ++++.+.|+-+..|...-|..+...+ ....|.++.+|.|.++++||+.|..
T Consensus 620 h~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk--E~SsVlsCDIS~ddkyIVTGSGdkk 697 (705)
T KOG0639|consen 620 HTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK--ESSSVLSCDISFDDKYIVTGSGDKK 697 (705)
T ss_pred ecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc--ccCcceeeeeccCceEEEecCCCcc
Confidence 7655444444447888999999875 89999999999999999888777764 5668999999999999999999999
Q ss_pred EEEEeC
Q 001349 1088 IQAWGL 1093 (1094)
Q Consensus 1088 I~iWdl 1093 (1094)
-.+|.+
T Consensus 698 ATVYeV 703 (705)
T KOG0639|consen 698 ATVYEV 703 (705)
T ss_pred eEEEEE
Confidence 888876
No 131
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=5.6e-18 Score=197.86 Aligned_cols=238 Identities=20% Similarity=0.267 Sum_probs=191.8
Q ss_pred ccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 001349 810 SSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNE 887 (1094)
Q Consensus 810 ~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~ 887 (1094)
..|++.-+.|+|.|+ +|++++.||.|++|+..... ..-.++..|...|.+++. ++.+|++|+.+++|.+|.+..+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~-e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDE-EEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcc-cCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCC
Confidence 479999999999986 99999999999999876541 122233337778887776 4569999999999999999987
Q ss_pred ceE-EEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCc
Q 001349 888 EIH-CVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGT 966 (1094)
Q Consensus 888 ~~~-~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~ 966 (1094)
+.. .+..+ .-++..++ |+.+|+ .++.|+.|-.|++.+..+..
T Consensus 87 ~~~~iL~Rf--tlp~r~~~-------v~g~g~----------------------------~iaagsdD~~vK~~~~~D~s 129 (933)
T KOG1274|consen 87 EEDTILARF--TLPIRDLA-------VSGSGK----------------------------MIAAGSDDTAVKLLNLDDSS 129 (933)
T ss_pred Cccceeeee--eccceEEE-------EecCCc----------------------------EEEeecCceeEEEEeccccc
Confidence 522 11111 22333333 555555 48889999999999998877
Q ss_pred eeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecC---------CCCEEEEEEeCC--E
Q 001349 967 FATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT---------LSEVRAMVVSSE--L 1035 (1094)
Q Consensus 967 ~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~---------~~~v~~l~~spd--~ 1035 (1094)
.. ..+.+|..+|.++.|+|++.++|+.+.|| .|++||+.++.+..++.. ...+..++|+|+ .
T Consensus 130 ~~------~~lrgh~apVl~l~~~p~~~fLAvss~dG-~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~ 202 (933)
T KOG1274|consen 130 QE------KVLRGHDAPVLQLSYDPKGNFLAVSSCDG-KVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGT 202 (933)
T ss_pred hh------eeecccCCceeeeeEcCCCCEEEEEecCc-eEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCe
Confidence 66 67889999999999999999999999997 999999999888777652 344678999999 6
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEecccCCc-ceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1036 VYLGCKGGTVEIWDQKRQIRIETLQTGTSG-KVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1036 l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~-~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
++..+.|+.|.+|+..++.....+...+.. .++++.|||+|+||++++.||.|.|||+.
T Consensus 203 la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 203 LAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVD 262 (933)
T ss_pred EEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence 888899999999999999988888544433 49999999999999999999999999973
No 132
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=6.2e-20 Score=208.44 Aligned_cols=247 Identities=18% Similarity=0.307 Sum_probs=205.1
Q ss_pred EEeeCCCCeEEEeCCcceeecccCCCcEEEEEEeC--CEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecC
Q 001349 789 LSNGHDSSADFWNHRELVHVDSSENGKVLSIACFR--DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS 866 (1094)
Q Consensus 789 ~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~fsp--d~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspd 866 (1094)
.....+-.+++|++.. ...|...|.++..-. ..+++|+.|..+-+|.+... ..+..+.+|..+|.++.|+++
T Consensus 8 m~~~~~t~Lr~~~~~~----~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp--~~i~S~~~hespIeSl~f~~~ 81 (825)
T KOG0267|consen 8 MKTKRATKLRVWDTRE----FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP--NAITSLTGHESPIESLTFDTS 81 (825)
T ss_pred ceeeeeeccccccchh----hhhhhhhhceeeeeccceeeccCCCceeeccccccCC--chhheeeccCCcceeeecCcc
Confidence 3444555677888753 346777787777633 38999999999999998776 677789999999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCC
Q 001349 867 GEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQG 946 (1094)
Q Consensus 867 g~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~ 946 (1094)
..+|+.|+.||+|++||+..++. ......|..++.++. |+|-|.+
T Consensus 82 E~LlaagsasgtiK~wDleeAk~-vrtLtgh~~~~~sv~-------f~P~~~~--------------------------- 126 (825)
T KOG0267|consen 82 ERLLAAGSASGTIKVWDLEEAKI-VRTLTGHLLNITSVD-------FHPYGEF--------------------------- 126 (825)
T ss_pred hhhhcccccCCceeeeehhhhhh-hhhhhccccCcceee-------eccceEE---------------------------
Confidence 99999999999999999998651 112334566666666 6665553
Q ss_pred EEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCC
Q 001349 947 KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSE 1025 (1094)
Q Consensus 947 ~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~ 1025 (1094)
.+.|+.|+.+.+||++...+. ..+.+|...|..+.|+|+|.++++++.|. +++|||...|+....|. |...
T Consensus 127 -~a~gStdtd~~iwD~Rk~Gc~------~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~-tvki~d~~agk~~~ef~~~e~~ 198 (825)
T KOG0267|consen 127 -FASGSTDTDLKIWDIRKKGCS------HTYKSHTRVVDVLRLSPDGRWVASGGEDN-TVKIWDLTAGKLSKEFKSHEGK 198 (825)
T ss_pred -eccccccccceehhhhccCce------eeecCCcceeEEEeecCCCceeeccCCcc-eeeeeccccccccccccccccc
Confidence 577899999999999977776 55667889999999999999999998875 99999999999999999 8899
Q ss_pred EEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCC
Q 001349 1026 VRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSD 1085 (1094)
Q Consensus 1026 v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~D 1085 (1094)
+.++.|+|. .++.|+.|++|++||+++...+.... .....|.+.+|+|+++.+.+|..+
T Consensus 199 v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~-~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 199 VQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGK-PETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred ccccccCchhhhhccCCCCceeeeeccceeEEeeccC-CccCCceeeeecCCceeeecCchh
Confidence 999999998 78899999999999999998888874 456789999999999999888654
No 133
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.79 E-value=5.1e-19 Score=186.79 Aligned_cols=251 Identities=15% Similarity=0.223 Sum_probs=196.2
Q ss_pred cEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEE
Q 001349 786 VKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAI 863 (1094)
Q Consensus 786 ~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~f 863 (1094)
..+++|+.||.|++||.. .+...+..|.|.|..|++....+++++.|.+|+.|.+... +++++.+ .+.+..++-
T Consensus 80 s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~~---p~~tilg-~s~~~gIdh 155 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDGP---PLHTILG-KSVYLGIDH 155 (433)
T ss_pred hhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeeccCC---cceeeec-ccccccccc
Confidence 468999999999999998 5778899999999999999999999999999999998774 6677653 456778888
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeE-EEEEeCCeEEEEcCCC------
Q 001349 864 LQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGI-KVHLRNGKTKLLNSSK------ 936 (1094)
Q Consensus 864 spdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l-~~~~~~g~i~l~~~~~------ 936 (1094)
+..++.++|+|.+ |-|||............. -+.+.++. |+|....+ +++..|+.+.++|...
T Consensus 156 ~~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG-~Dti~svk-------fNpvETsILas~~sDrsIvLyD~R~~~Pl~K 225 (433)
T KOG0268|consen 156 HRKNSVFATCGEQ--IDIWDEQRDNPVSSMSWG-ADSISSVK-------FNPVETSILASCASDRSIVLYDLRQASPLKK 225 (433)
T ss_pred ccccccccccCce--eeecccccCCccceeecC-CCceeEEe-------cCCCcchheeeeccCCceEEEecccCCccce
Confidence 8788899999875 999998764311111111 22344444 77776644 5555889999998632
Q ss_pred -----CceEEEEeCC--EEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEE
Q 001349 937 -----YPKCLALVQG--KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMW 1009 (1094)
Q Consensus 937 -----~v~~l~~s~~--~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iw 1009 (1094)
.-+.++|+|. .+++|+.|..++.||++.-.... ....+|.+.|.+++|+|.|.-+++||.| ++|+||
T Consensus 226 Vi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~-----~v~~dhvsAV~dVdfsptG~EfvsgsyD-ksIRIf 299 (433)
T KOG0268|consen 226 VILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPL-----NVHKDHVSAVMDVDFSPTGQEFVSGSYD-KSIRIF 299 (433)
T ss_pred eeeeccccceecCccccceeeccccccceehhhhhhcccc-----hhhcccceeEEEeccCCCcchhcccccc-ceEEEe
Confidence 3456777773 38899999999999998755332 5667899999999999999999999999 599999
Q ss_pred ECCCCeEEEEec--CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEE
Q 001349 1010 STSNYNMVGSLP--TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRI 1056 (1094)
Q Consensus 1010 d~~~~~~~~~~~--~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~ 1056 (1094)
..+.+.....+. .-..|.++.||-| ++++||+|+.|++|.....+.+
T Consensus 300 ~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 300 PVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred ecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhc
Confidence 998776544333 2356899999998 9999999999999987654433
No 134
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=1.1e-19 Score=206.45 Aligned_cols=216 Identities=20% Similarity=0.390 Sum_probs=181.8
Q ss_pred ccccCcEEEEeeCCCCeEEEeCCc--ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCC
Q 001349 781 LAFEMVKVLSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTK 856 (1094)
Q Consensus 781 ~~~d~~~l~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~ 856 (1094)
....++.+++|+.|..+-+|.... .+..+.+|.++|.++.|+.+ +|++|+.+|+|++||+... +.++++.+|..
T Consensus 36 ~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA--k~vrtLtgh~~ 113 (825)
T KOG0267|consen 36 IRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA--KIVRTLTGHLL 113 (825)
T ss_pred eeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhh--hhhhhhhcccc
Confidence 334567899999999999999873 44557899999999999986 9999999999999999988 78899999999
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCC
Q 001349 857 AVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSK 936 (1094)
Q Consensus 857 ~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~ 936 (1094)
.+.++.|+|-+.+.++|+.|+.+++||++........ ..|...|..+. |+|+|++
T Consensus 114 ~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~-~s~~~vv~~l~-------lsP~Gr~----------------- 168 (825)
T KOG0267|consen 114 NITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTY-KSHTRVVDVLR-------LSPDGRW----------------- 168 (825)
T ss_pred CcceeeeccceEEeccccccccceehhhhccCceeee-cCCcceeEEEe-------ecCCCce-----------------
Confidence 9999999999999999999999999999843211111 12445555555 8888885
Q ss_pred CceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeE
Q 001349 937 YPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNM 1016 (1094)
Q Consensus 937 ~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~ 1016 (1094)
++.|+.|.++++||...|+.. ..|.+|...+.++.|+|...++++|+.|. ++++||+++...
T Consensus 169 -----------v~~g~ed~tvki~d~~agk~~------~ef~~~e~~v~sle~hp~e~Lla~Gs~d~-tv~f~dletfe~ 230 (825)
T KOG0267|consen 169 -----------VASGGEDNTVKIWDLTAGKLS------KEFKSHEGKVQSLEFHPLEVLLAPGSSDR-TVRFWDLETFEV 230 (825)
T ss_pred -----------eeccCCcceeeeecccccccc------cccccccccccccccCchhhhhccCCCCc-eeeeeccceeEE
Confidence 677888999999999999987 67778999999999999999999999996 999999999888
Q ss_pred EEEec-CCCCEEEEEEeCC--EEEEEEc
Q 001349 1017 VGSLP-TLSEVRAMVVSSE--LVYLGCK 1041 (1094)
Q Consensus 1017 ~~~~~-~~~~v~~l~~spd--~l~sgs~ 1041 (1094)
+.... ....|.+..|+++ .+++|..
T Consensus 231 I~s~~~~~~~v~~~~fn~~~~~~~~G~q 258 (825)
T KOG0267|consen 231 ISSGKPETDGVRSLAFNPDGKIVLSGEQ 258 (825)
T ss_pred eeccCCccCCceeeeecCCceeeecCch
Confidence 87776 4678999999999 3444443
No 135
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=1e-17 Score=186.80 Aligned_cols=267 Identities=15% Similarity=0.201 Sum_probs=198.8
Q ss_pred ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCC--EEEEEeCCCcEE
Q 001349 805 LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGE--MLYSGSLDKTAR 880 (1094)
Q Consensus 805 ~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~--~LaSgs~DgtI~ 880 (1094)
+..++.||++.|.+|+..|. +|++|+.||+|+||.+.|+ .|++++. ..+.|.||+|+|.+. .|+++-. +.+.
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg--Rcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~-~~~~ 467 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATG--RCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVG-ECVL 467 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecc--eEEEEEe-ecceeEEEEecCCCCceeEEEEec-CceE
Confidence 34567899999999999885 9999999999999999999 7888875 456899999999654 3444333 3344
Q ss_pred EEECCCCc------------------------------------eEEEEecccCccceeeeecCceEEEeeCCCeEEEEE
Q 001349 881 VWSIGNEE------------------------------------IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHL 924 (1094)
Q Consensus 881 vWdi~~~~------------------------------------~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~ 924 (1094)
|-+..-|. ........+..+|..+. |+..|.++++..
T Consensus 468 ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vt-------WHrkGDYlatV~ 540 (733)
T KOG0650|consen 468 IVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVT-------WHRKGDYLATVM 540 (733)
T ss_pred EeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceee-------eecCCceEEEec
Confidence 44433221 00111122334444544 888999998877
Q ss_pred eCC---eEEEEc------------CCCCceEEEEeCCE--EEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEE
Q 001349 925 RNG---KTKLLN------------SSKYPKCLALVQGK--VYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHAL 987 (1094)
Q Consensus 925 ~~g---~i~l~~------------~~~~v~~l~~s~~~--l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl 987 (1094)
.++ .+.+.. ..+.|.++.|++.. ++++ .-..|++||+..+..+ +++......|.++
T Consensus 541 ~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVa-Tq~~vRiYdL~kqelv------KkL~tg~kwiS~m 613 (733)
T KOG0650|consen 541 PDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVA-TQRSVRIYDLSKQELV------KKLLTGSKWISSM 613 (733)
T ss_pred cCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEE-eccceEEEehhHHHHH------HHHhcCCeeeeee
Confidence 653 233333 24678999999843 5554 4578999999886655 4555556789999
Q ss_pred EEeCCccEEEEEECCCCEEEEEECCCC-eEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECC-------C--Cc
Q 001349 988 QVHNGLVYTASTSLDGAAVKMWSTSNY-NMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQK-------R--QI 1054 (1094)
Q Consensus 988 ~fs~~~~~las~s~Dg~~I~iwd~~~~-~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~-------t--~~ 1054 (1094)
+.||+|..++.++.|+ .+..||+.-+ ++.+++. |...+++++|++. ++++|+.||++.||.-. + --
T Consensus 614 sihp~GDnli~gs~d~-k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliV 692 (733)
T KOG0650|consen 614 SIHPNGDNLILGSYDK-KMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIV 692 (733)
T ss_pred eecCCCCeEEEecCCC-eeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceE
Confidence 9999999999999996 8999999754 5666666 7788999999998 79999999999998532 1 12
Q ss_pred EEEEecccCCcc----eEEEEEcCCCCEEEEEeCCCcEEEE
Q 001349 1055 RIETLQTGTSGK----VQCMALDDNEEFLVIGTSDGRIQAW 1091 (1094)
Q Consensus 1055 ~~~~l~~~h~~~----I~~l~~Spdg~~L~sgs~DG~I~iW 1091 (1094)
++..+ .+|... |..+.|+|...+|++++.||+|++|
T Consensus 693 PlK~L-~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 693 PLKRL-RGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeeec-cCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 45566 477654 8899999999999999999999999
No 136
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=4e-17 Score=169.53 Aligned_cols=260 Identities=15% Similarity=0.243 Sum_probs=183.9
Q ss_pred HhhhccccccccccCcEEEEeeCCCCeEEEeCC------cceeecccCCCcEEEEEEeC----CEEEEEECCCeEEEEec
Q 001349 771 GLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR------ELVHVDSSENGKVLSIACFR----DKIFSGHSDGTIKVWTG 840 (1094)
Q Consensus 771 ~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~------~~~~~~~~h~~~V~~l~fsp----d~LaSgs~Dg~I~vWd~ 840 (1094)
+|..+++...|.|+|+++++|+.|++|+|||.+ .+......|.+.|..|.|.+ +.+|+++.|+++.||.-
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE 90 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEE 90 (361)
T ss_pred CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeee
Confidence 456778889999999999999999999999964 34456678999999999975 39999999999999964
Q ss_pred C-------CCcceeEEEecccCCCeEEEEEec--CCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceE
Q 001349 841 R-------GSILHLIQQIREHTKAVTGLAILQ--SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSIL 911 (1094)
Q Consensus 841 ~-------t~~~~~~~~l~~H~~~V~sv~fsp--dg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~ 911 (1094)
. +.++....++....+.|+.|.|.| -|-.+++++.||++|||+.-.-- -+........+..+
T Consensus 91 ~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~--nLs~W~Lq~Ei~~~------- 161 (361)
T KOG2445|consen 91 QEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPM--NLSQWTLQHEIQNV------- 161 (361)
T ss_pred cccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcc--ccccchhhhhhhhc-------
Confidence 2 234566778888889999999999 48899999999999999875421 01111111111111
Q ss_pred EEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCC-----EEEEEEcC-----CeEEEEECCCCceeEEeccceeecCCC
Q 001349 912 CFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQG-----KVYCGCQD-----GAIQEIDLATGTFATIQTGHRKLLGKA 981 (1094)
Q Consensus 912 ~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~-----~l~sgs~D-----g~I~iwDl~~~~~~~~~~~~~~~~~h~ 981 (1094)
..|-|+ +.....|+.++++ .|++|+.+ +.++||....+...... ...+.+|.
T Consensus 162 -~~pp~~---------------~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~k--va~L~d~~ 223 (361)
T KOG2445|consen 162 -IDPPGK---------------NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLK--VAELPDHT 223 (361)
T ss_pred -cCCccc---------------ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeee--ehhcCCCC
Confidence 112222 1233455666543 37777766 47888876554322111 14567999
Q ss_pred CCeEEEEEeCC----ccEEEEEECCCCEEEEEECCCC--------------------eEEEEec-CCCCEEEEEEeCC--
Q 001349 982 NPVHALQVHNG----LVYTASTSLDGAAVKMWSTSNY--------------------NMVGSLP-TLSEVRAMVVSSE-- 1034 (1094)
Q Consensus 982 ~~V~sl~fs~~----~~~las~s~Dg~~I~iwd~~~~--------------------~~~~~~~-~~~~v~~l~~spd-- 1034 (1094)
.+|+.++|.|+ ...+++++.|| |+||++... +.+..+. |.+.|+.+.|+-.
T Consensus 224 dpI~di~wAPn~Gr~y~~lAvA~kDg--v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGt 301 (361)
T KOG2445|consen 224 DPIRDISWAPNIGRSYHLLAVATKDG--VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGT 301 (361)
T ss_pred CcceeeeeccccCCceeeEEEeecCc--EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeee
Confidence 99999999875 45788888886 999998731 1223333 6779999999755
Q ss_pred EEEEEEcCCeEEEEECC---CCcEEEEe
Q 001349 1035 LVYLGCKGGTVEIWDQK---RQIRIETL 1059 (1094)
Q Consensus 1035 ~l~sgs~dg~I~vwd~~---t~~~~~~l 1059 (1094)
.|.+.+.||.|++|... ..++...+
T Consensus 302 iLsStGdDG~VRLWkany~n~~kC~sv~ 329 (361)
T KOG2445|consen 302 ILSSTGDDGCVRLWKANYNNLWKCTSVL 329 (361)
T ss_pred EEeecCCCceeeehhhhhhhhheeeeEE
Confidence 78888999999999753 23444444
No 137
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=3.3e-17 Score=170.20 Aligned_cols=275 Identities=13% Similarity=0.182 Sum_probs=198.1
Q ss_pred cccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEe
Q 001349 776 RKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQI 851 (1094)
Q Consensus 776 ~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l 851 (1094)
...+.|+..|.++|.|..||.|.|||+. ....++.+|..+|++++||++ .|+|+|.|..|.+||+..| .+++.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~g--s~l~ri 103 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKG--SPLKRI 103 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCC--CceeEE
Confidence 3456678889999999999999999998 466788999999999999997 9999999999999999999 677777
Q ss_pred cccCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEE
Q 001349 852 REHTKAVTGLAILQS-GEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTK 930 (1094)
Q Consensus 852 ~~H~~~V~sv~fspd-g~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~ 930 (1094)
. ...+|+.+.|+|. .+..+..-.+..-.+-++..+...++.... .+..... .+...|.+.|
T Consensus 104 r-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~-d~dln~s---as~~~fdr~g------------- 165 (405)
T KOG1273|consen 104 R-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDD-DGDLNSS---ASHGVFDRRG------------- 165 (405)
T ss_pred E-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCC-ccccccc---cccccccCCC-------------
Confidence 5 6789999999994 333333333444445555443222221111 1111100 0111233333
Q ss_pred EEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEE
Q 001349 931 LLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWS 1010 (1094)
Q Consensus 931 l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd 1010 (1094)
..|++|...|.+.+||..+-+++..+.-. ....|..+.|+..+.+++..+.| +.||.|+
T Consensus 166 ---------------~yIitGtsKGkllv~~a~t~e~vas~rit-----s~~~IK~I~~s~~g~~liiNtsD-RvIR~ye 224 (405)
T KOG1273|consen 166 ---------------KYIITGTSKGKLLVYDAETLECVASFRIT-----SVQAIKQIIVSRKGRFLIINTSD-RVIRTYE 224 (405)
T ss_pred ---------------CEEEEecCcceEEEEecchheeeeeeeec-----hheeeeEEEEeccCcEEEEecCC-ceEEEEe
Confidence 35899999999999999998877543211 12678899999999999998888 6999999
Q ss_pred CCC-------CeE--EEEec---CCCCEEEEEEeCC--EEEEEE-cCCeEEEEECCCCcEEEEecccCC-cceEEEEEcC
Q 001349 1011 TSN-------YNM--VGSLP---TLSEVRAMVVSSE--LVYLGC-KGGTVEIWDQKRQIRIETLQTGTS-GKVQCMALDD 1074 (1094)
Q Consensus 1011 ~~~-------~~~--~~~~~---~~~~v~~l~~spd--~l~sgs-~dg~I~vwd~~t~~~~~~l~~~h~-~~I~~l~~Sp 1074 (1094)
++. +.+ .+.+. ....-.+++||.+ |++.|+ ....++||....|.+++.+. |.. .....+.|+|
T Consensus 225 ~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILh-G~kgE~l~DV~whp 303 (405)
T KOG1273|consen 225 ISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILH-GTKGEELLDVNWHP 303 (405)
T ss_pred hhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeec-CCchhheeeccccc
Confidence 863 111 12221 2334567888888 555555 45689999999999999994 555 5788999999
Q ss_pred CCCEEEEEeCCCcEEEEeC
Q 001349 1075 NEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1075 dg~~L~sgs~DG~I~iWdl 1093 (1094)
-...+++- ..|.|+||..
T Consensus 304 ~rp~i~si-~sg~v~iw~~ 321 (405)
T KOG1273|consen 304 VRPIIASI-ASGVVYIWAV 321 (405)
T ss_pred ceeeeeec-cCCceEEEEe
Confidence 88888877 7899999974
No 138
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=1.5e-17 Score=181.51 Aligned_cols=237 Identities=19% Similarity=0.258 Sum_probs=179.9
Q ss_pred cccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecC-------CCc
Q 001349 776 RKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGR-------GSI 844 (1094)
Q Consensus 776 ~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~-------t~~ 844 (1094)
....+..++|.+++.|+..|.|.+|.+. ..+.++..|-..|+|+.|+.| +|+||+.||.|.+|++. ++.
T Consensus 84 v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~ 163 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHS 163 (476)
T ss_pred eeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCC
Confidence 4455666788899888899999999998 567788999999999999987 99999999999999763 334
Q ss_pred ceeEEEecccCCCeEEEEEecC--CCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEE
Q 001349 845 LHLIQQIREHTKAVTGLAILQS--GEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKV 922 (1094)
Q Consensus 845 ~~~~~~l~~H~~~V~sv~fspd--g~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~ 922 (1094)
..+++.|.+|+-+|+++...+. ..+++|+|.|.++++||+..|. .+.....+..+.++. .+|-+..
T Consensus 164 ~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~--LLlti~fp~si~av~-------lDpae~~--- 231 (476)
T KOG0646|consen 164 VKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV--LLLTITFPSSIKAVA-------LDPAERV--- 231 (476)
T ss_pred ccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce--eeEEEecCCcceeEE-------EcccccE---
Confidence 5788999999999999998764 4689999999999999999984 333344456666666 5565554
Q ss_pred EEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCcee----------EEeccceeecCCCC--CeEEEEEe
Q 001349 923 HLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFA----------TIQTGHRKLLGKAN--PVHALQVH 990 (1094)
Q Consensus 923 ~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~----------~~~~~~~~~~~h~~--~V~sl~fs 990 (1094)
+++|+.+|.|.+.++.+-... ........+.||.+ +|+|++++
T Consensus 232 -------------------------~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais 286 (476)
T KOG0646|consen 232 -------------------------VYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIS 286 (476)
T ss_pred -------------------------EEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEe
Confidence 566666666666555432200 00011145778887 99999999
Q ss_pred CCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeC---CEEEEEEcCCeEEEEEC
Q 001349 991 NGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSS---ELVYLGCKGGTVEIWDQ 1050 (1094)
Q Consensus 991 ~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~sp---d~l~sgs~dg~I~vwd~ 1050 (1094)
-|+.++++|+.|| .|.|||+.+.++++++. ..++|+.+.+.| ..+..-...-.+-.|++
T Consensus 287 ~DgtlLlSGd~dg-~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~l 349 (476)
T KOG0646|consen 287 TDGTLLLSGDEDG-KVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHL 349 (476)
T ss_pred cCccEEEeeCCCC-CEEEEecchHHHHHHHhhhccccceeEeeccccceecccccCccCCchHh
Confidence 9999999999997 99999999999999998 678899888844 43333333344444543
No 139
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=2.2e-16 Score=179.30 Aligned_cols=238 Identities=20% Similarity=0.361 Sum_probs=189.3
Q ss_pred CCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccC-CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 001349 812 ENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHT-KAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE 888 (1094)
Q Consensus 812 h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~-~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~ 888 (1094)
...+|++++|+.+ .||.+=.||.|-+|++..+ +-+...+.+|. ..|.+++|+ +|..|.|.+.+|+|.-||+.+++
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~-w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk 101 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN-WFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLK 101 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCC-ceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCc
Confidence 3578999999985 9999999999999999886 34556666665 469999999 56678899999999999999975
Q ss_pred eEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCcee
Q 001349 889 IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFA 968 (1094)
Q Consensus 889 ~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~ 968 (1094)
.. .......+.|++++ .+|.+. .+++||.||.+..++...+...
T Consensus 102 ~~-~~~d~~gg~IWsia-------i~p~~~----------------------------~l~IgcddGvl~~~s~~p~~I~ 145 (691)
T KOG2048|consen 102 QK-YNIDSNGGAIWSIA-------INPENT----------------------------ILAIGCDDGVLYDFSIGPDKIT 145 (691)
T ss_pred ee-EEecCCCcceeEEE-------eCCccc----------------------------eEEeecCCceEEEEecCCceEE
Confidence 22 22233455666665 444333 4788999998888887777655
Q ss_pred EEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec---------CCCCEEEEEEeCC-EEEE
Q 001349 969 TIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP---------TLSEVRAMVVSSE-LVYL 1038 (1094)
Q Consensus 969 ~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~---------~~~~v~~l~~spd-~l~s 1038 (1094)
.. ..+....+.|.++.|++++..+++|+.|| .|++||..++..+.... ...-|+++.+-.+ .+++
T Consensus 146 ~~----r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg-~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~s 220 (691)
T KOG2048|consen 146 YK----RSLMRQKSRVLSLSWNPTGTKIAGGSIDG-VIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIAS 220 (691)
T ss_pred EE----eecccccceEEEEEecCCccEEEecccCc-eEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEE
Confidence 32 34445568999999999999999999997 99999999988766322 1223677776554 8999
Q ss_pred EEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1039 GCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1039 gs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
|...|+|.+||...++++..+ ..|.+.|.+++..+++++++++|.|++|.-+..
T Consensus 221 gDS~G~V~FWd~~~gTLiqS~-~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~ 274 (691)
T KOG2048|consen 221 GDSAGTVTFWDSIFGTLIQSH-SCHDADVLALAVADNEDRVFSAGVDPKIIQYSL 274 (691)
T ss_pred ecCCceEEEEcccCcchhhhh-hhhhcceeEEEEcCCCCeEEEccCCCceEEEEe
Confidence 999999999999999999999 589999999999999999999999999877653
No 140
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.75 E-value=8.1e-16 Score=172.74 Aligned_cols=254 Identities=11% Similarity=0.053 Sum_probs=175.9
Q ss_pred cccccccCcEE-EEeeCCCCeEEEeCCc--ceeecccCCCcEEEEEEeCC--EE-EEEECCCeEEEEecCCCcceeEEEe
Q 001349 778 YSPLAFEMVKV-LSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFRD--KI-FSGHSDGTIKVWTGRGSILHLIQQI 851 (1094)
Q Consensus 778 ~~~~~~d~~~l-~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~fspd--~L-aSgs~Dg~I~vWd~~t~~~~~~~~l 851 (1094)
...+.+++..+ ++++.++.|++||... ....+..+. .+..++|+|+ .+ ++++.|+.|++||+.++ ..+..+
T Consensus 35 ~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~--~~~~~~ 111 (300)
T TIGR03866 35 GITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETR--KVLAEI 111 (300)
T ss_pred ceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCC--eEEeEe
Confidence 34566788766 5677889999999874 333333333 3567899986 45 45567899999999987 566666
Q ss_pred cccCCCeEEEEEecCCCEEEEEeCCC-cEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEE
Q 001349 852 REHTKAVTGLAILQSGEMLYSGSLDK-TARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTK 930 (1094)
Q Consensus 852 ~~H~~~V~sv~fspdg~~LaSgs~Dg-tI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~ 930 (1094)
.. ...+.+++|+|+|+++++++.++ .+.+||..+++..... ........+ .|+|+|+.+
T Consensus 112 ~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~~~~~-------~~s~dg~~l---------- 171 (300)
T TIGR03866 112 PV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV--LVDQRPRFA-------EFTADGKEL---------- 171 (300)
T ss_pred eC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE--EcCCCccEE-------EECCCCCEE----------
Confidence 43 34578899999999999998875 4677898876432211 111222333 377777752
Q ss_pred EEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCC--CCCeEEEEEeCCccEEEEEECCCCEEEE
Q 001349 931 LLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGK--ANPVHALQVHNGLVYTASTSLDGAAVKM 1008 (1094)
Q Consensus 931 l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h--~~~V~sl~fs~~~~~las~s~Dg~~I~i 1008 (1094)
++++..++.|.+||+.+++....+.... ...+ ......+.|++++.++..+..+++.+.+
T Consensus 172 -----------------~~~~~~~~~v~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v 233 (300)
T TIGR03866 172 -----------------WVSSEIGGTVSVIDVATRKVIKKITFEI-PGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAV 233 (300)
T ss_pred -----------------EEEcCCCCEEEEEEcCcceeeeeeeecc-cccccccCCccceEECCCCCEEEEEcCCCCeEEE
Confidence 2344568999999999887654322110 0001 1123468899998875444333348999
Q ss_pred EECCCCeEEEEecCCCCEEEEEEeCC--EEEEE-EcCCeEEEEECCCCcEEEEecccCCcceEEEEEcC
Q 001349 1009 WSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLG-CKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDD 1074 (1094)
Q Consensus 1009 wd~~~~~~~~~~~~~~~v~~l~~spd--~l~sg-s~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Sp 1074 (1094)
||..+++....+.+...+.+++|+|+ +++++ ..+|.|.+||+.+++++..+.. ....++++|+|
T Consensus 234 ~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~ 300 (300)
T TIGR03866 234 VDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV--GRLPWGVVVRP 300 (300)
T ss_pred EECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc--ccccceeEeCC
Confidence 99999888877766678999999998 67765 4689999999999999999963 35668888875
No 141
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.75 E-value=2.7e-17 Score=174.79 Aligned_cols=217 Identities=18% Similarity=0.252 Sum_probs=162.2
Q ss_pred ecccCCCeEEEEEecCC--CEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCe
Q 001349 851 IREHTKAVTGLAILQSG--EMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGK 928 (1094)
Q Consensus 851 l~~H~~~V~sv~fspdg--~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~ 928 (1094)
..+|.+.|+.+..++-| .+.++=+..|.|+|||+...- .++.... ..+. + ......
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l-~~l~~~~--~~~~----------~---------s~~~Pl 204 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHL-NALSEPG--LEVK----------D---------SEFRPL 204 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhh-hhhcCcc--cccc----------c---------cccCce
Confidence 34688888888887744 566677788999999997631 1111110 0000 0 000011
Q ss_pred EEEEcCCCCceEEEEeC---CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCC-ccEEEEEECCCC
Q 001349 929 TKLLNSSKYPKCLALVQ---GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG-LVYTASTSLDGA 1004 (1094)
Q Consensus 929 i~l~~~~~~v~~l~~s~---~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~-~~~las~s~Dg~ 1004 (1094)
..+-.|.+.-+.+.|++ |.+++|.--+.|++|...+|..... ...+.+|+..|-.++|+|. ...+++||.||
T Consensus 205 ~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd---~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dg- 280 (440)
T KOG0302|consen 205 FTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVD---QRPFTGHTKSVEDLQWSPTEDGVFASCSCDG- 280 (440)
T ss_pred EEecccCccceeeecccccccccccCccccceEeeeeccCceeec---CccccccccchhhhccCCccCceEEeeecCc-
Confidence 11222445556777776 6689998889999999999876532 2567889999999999975 56789999997
Q ss_pred EEEEEECCCC---eEEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCC---CcEEEEecccCCcceEEEEEcCCC
Q 001349 1005 AVKMWSTSNY---NMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKR---QIRIETLQTGTSGKVQCMALDDNE 1076 (1094)
Q Consensus 1005 ~I~iwd~~~~---~~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t---~~~~~~l~~~h~~~I~~l~~Spdg 1076 (1094)
+|+|||++.+ .++.+-.|.+.|+.+.|+.+ +|++|++||+++|||+++ ++++..| ..|..+|+++.|+|..
T Consensus 281 sIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~f-k~Hk~pItsieW~p~e 359 (440)
T KOG0302|consen 281 SIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATF-KYHKAPITSIEWHPHE 359 (440)
T ss_pred eEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeE-EeccCCeeEEEecccc
Confidence 9999999987 45555558899999999988 799999999999999875 6788888 4799999999999854
Q ss_pred -CEEEEEeCCCcEEEEeCC
Q 001349 1077 -EFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1077 -~~L~sgs~DG~I~iWdls 1094 (1094)
..|+++|.|..|.|||++
T Consensus 360 ~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 360 DSVIAASGEDNQITIWDLS 378 (440)
T ss_pred CceEEeccCCCcEEEEEee
Confidence 678888999999999985
No 142
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.75 E-value=1.6e-16 Score=163.60 Aligned_cols=245 Identities=19% Similarity=0.259 Sum_probs=175.8
Q ss_pred eecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCc----------ceeE---EEecccCCCeEEEEEec-CCCE
Q 001349 807 HVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSI----------LHLI---QQIREHTKAVTGLAILQ-SGEM 869 (1094)
Q Consensus 807 ~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~----------~~~~---~~l~~H~~~V~sv~fsp-dg~~ 869 (1094)
.....|.+.|.++...+. ++++|+.||.|.|||++... ..++ ..-.+|.-.|.++.|-| |.-+
T Consensus 37 d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 37 DFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred ceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCce
Confidence 345679999999999873 99999999999999997541 0111 11246788899999999 7778
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEE
Q 001349 870 LYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVY 949 (1094)
Q Consensus 870 LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~ 949 (1094)
+.++|.|.+++|||+++- +....+..++.|++-+ ++|-.. +.-.++
T Consensus 117 FtssSFDhtlKVWDtnTl--Q~a~~F~me~~VYsha-------mSp~a~-------------------------sHcLiA 162 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTL--QEAVDFKMEGKVYSHA-------MSPMAM-------------------------SHCLIA 162 (397)
T ss_pred eecccccceEEEeecccc--eeeEEeecCceeehhh-------cChhhh-------------------------cceEEE
Confidence 999999999999999985 4444455566666655 333211 112488
Q ss_pred EEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCcc-EEEEEECCCCEEEEEECCCC-eEEEEe-------
Q 001349 950 CGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLV-YTASTSLDGAAVKMWSTSNY-NMVGSL------- 1020 (1094)
Q Consensus 950 sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~-~las~s~Dg~~I~iwd~~~~-~~~~~~------- 1020 (1094)
+|..|-.|++.|+.+|... ..+.||.+.|.++.|+|... .+++++.|| .|++||++.- .+...+
T Consensus 163 ~gtr~~~VrLCDi~SGs~s------H~LsGHr~~vlaV~Wsp~~e~vLatgsaDg-~irlWDiRrasgcf~~lD~hn~k~ 235 (397)
T KOG4283|consen 163 AGTRDVQVRLCDIASGSFS------HTLSGHRDGVLAVEWSPSSEWVLATGSADG-AIRLWDIRRASGCFRVLDQHNTKR 235 (397)
T ss_pred EecCCCcEEEEeccCCcce------eeeccccCceEEEEeccCceeEEEecCCCc-eEEEEEeecccceeEEeecccCcc
Confidence 8999999999999999987 67889999999999998655 467778886 9999999753 222222
Q ss_pred --------cCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEE----------------EecccCCcceEEEEEcC
Q 001349 1021 --------PTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIE----------------TLQTGTSGKVQCMALDD 1074 (1094)
Q Consensus 1021 --------~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~----------------~l~~~h~~~I~~l~~Sp 1074 (1094)
.|.+.|.+++|..| ++++.+.|..+++|+..+|.... ....+|.+.+.-+-..
T Consensus 236 ~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~- 314 (397)
T KOG4283|consen 236 PPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPND- 314 (397)
T ss_pred CccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecC-
Confidence 15677999999988 89999999999999988764211 0112222222222111
Q ss_pred CCCEEEEEeCCCcEEEEeC
Q 001349 1075 NEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1075 dg~~L~sgs~DG~I~iWdl 1093 (1094)
++-.|++..+...|+.|+.
T Consensus 315 ~~lall~~~sgs~ir~l~~ 333 (397)
T KOG4283|consen 315 GSLALLNLLEGSFVRRLST 333 (397)
T ss_pred CeEEEEEccCceEEEeeec
Confidence 3345666666777888875
No 143
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.75 E-value=9.6e-17 Score=170.65 Aligned_cols=244 Identities=16% Similarity=0.210 Sum_probs=179.2
Q ss_pred ecccCCCcEEEEEEeC--C--EEEEEECCCeEEEEecCC--------------CcceeEEEecccCCCeEEEEEecC-CC
Q 001349 808 VDSSENGKVLSIACFR--D--KIFSGHSDGTIKVWTGRG--------------SILHLIQQIREHTKAVTGLAILQS-GE 868 (1094)
Q Consensus 808 ~~~~h~~~V~~l~fsp--d--~LaSgs~Dg~I~vWd~~t--------------~~~~~~~~l~~H~~~V~sv~fspd-g~ 868 (1094)
...+|.+.+..+.-++ + +.++-+..|.|+|||+.. ....++.++.+|.+.=..++|||- ..
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g 225 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG 225 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc
Confidence 3446777777766654 3 777778889999998752 234678899999999999999992 23
Q ss_pred EEEEEeCCCcEEEEECCCCceEEE--EecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCC
Q 001349 869 MLYSGSLDKTARVWSIGNEEIHCV--QVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQG 946 (1094)
Q Consensus 869 ~LaSgs~DgtI~vWdi~~~~~~~~--~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~ 946 (1094)
.|+||.--+.|++|...+|....- ....|...|..+. |+|..+ +
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLq-------WSptE~---------------------------~ 271 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQ-------WSPTED---------------------------G 271 (440)
T ss_pred ccccCccccceEeeeeccCceeecCccccccccchhhhc-------cCCccC---------------------------c
Confidence 477888788999999988763321 1223445555554 455443 3
Q ss_pred EEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCC---CeEEEEec-C
Q 001349 947 KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSN---YNMVGSLP-T 1022 (1094)
Q Consensus 947 ~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~---~~~~~~~~-~ 1022 (1094)
.+++|+.||+|+|||++.+..... .....|...|+.+.|+....++++|+.|| +++|||++. ++++..|+ |
T Consensus 272 vfaScS~DgsIrIWDiRs~~~~~~----~~~kAh~sDVNVISWnr~~~lLasG~DdG-t~~iwDLR~~~~~~pVA~fk~H 346 (440)
T KOG0302|consen 272 VFASCSCDGSIRIWDIRSGPKKAA----VSTKAHNSDVNVISWNRREPLLASGGDDG-TLSIWDLRQFKSGQPVATFKYH 346 (440)
T ss_pred eEEeeecCceEEEEEecCCCccce----eEeeccCCceeeEEccCCcceeeecCCCc-eEEEEEhhhccCCCcceeEEec
Confidence 589999999999999999843322 22367899999999998888999998886 999999985 56788888 8
Q ss_pred CCCEEEEEEeCC---EEEEEEcCCeEEEEECCCCcE--------E-------EEecccCC--cceEEEEEcCCC-CEEEE
Q 001349 1023 LSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIR--------I-------ETLQTGTS--GKVQCMALDDNE-EFLVI 1081 (1094)
Q Consensus 1023 ~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~~~--------~-------~~l~~~h~--~~I~~l~~Spdg-~~L~s 1081 (1094)
..+|+++.|+|. .+++++.|+.|.+||+..-.- . ..+..-|. ..|..+.|++.- .++++
T Consensus 347 k~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvs 426 (440)
T KOG0302|consen 347 KAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVS 426 (440)
T ss_pred cCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEE
Confidence 899999999986 789999999999999753110 0 01112343 378889998864 47788
Q ss_pred EeCCCcEEEE
Q 001349 1082 GTSDGRIQAW 1091 (1094)
Q Consensus 1082 gs~DG~I~iW 1091 (1094)
.+.||. .||
T Consensus 427 Ta~dGf-nVf 435 (440)
T KOG0302|consen 427 TAIDGF-NVF 435 (440)
T ss_pred ecccce-eEE
Confidence 888884 444
No 144
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.75 E-value=1.8e-17 Score=168.68 Aligned_cols=278 Identities=16% Similarity=0.214 Sum_probs=199.0
Q ss_pred ceeecccCCCcEEEEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEec-ccCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 001349 805 LVHVDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIR-EHTKAVTGLAILQSGEMLYSGSLDKTARVW 882 (1094)
Q Consensus 805 ~~~~~~~h~~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~-~H~~~V~sv~fspdg~~LaSgs~DgtI~vW 882 (1094)
+..++.+|.+.|+++.|-.+ +|++|..-|.|++|++.+. .....+. .|...|+.+..-|+ ..+.+-+.|+++.+|
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~--r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTE--RDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILW 82 (323)
T ss_pred CeeEeccccchheehhhccchhhhcccccceEEEEEeecC--ccchhhhhhccceeeceeecCC-cchhhcCCCceEEEE
Confidence 45567799999999999876 9999999999999999998 4555566 57788999988887 568899999999999
Q ss_pred ECCCCceEEEEecccCccceeeeecCceEEEeeCCCe---EEEEEeC-------------CeEEEEcC-----CCCceEE
Q 001349 883 SIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAG---IKVHLRN-------------GKTKLLNS-----SKYPKCL 941 (1094)
Q Consensus 883 di~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~---l~~~~~~-------------g~i~l~~~-----~~~v~~l 941 (1094)
++..+....+. .-.++++.|+... +.++++. +...... -.+.+-+. .+.+.|.
T Consensus 83 ~ia~s~~i~i~----Si~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~ 156 (323)
T KOG0322|consen 83 TIAYSAFISIH----SIVVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQ 156 (323)
T ss_pred EccCcceEEEe----eeeccccccccce--eccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeee
Confidence 99886422211 1233444433321 2222221 1111111 11122221 2445565
Q ss_pred EEe--CC---EEEEEEcCCeEEEEECCCCceeEEeccc----eeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECC
Q 001349 942 ALV--QG---KVYCGCQDGAIQEIDLATGTFATIQTGH----RKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTS 1012 (1094)
Q Consensus 942 ~~s--~~---~l~sgs~Dg~I~iwDl~~~~~~~~~~~~----~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~ 1012 (1094)
.+. .+ .+++|..+|.+.+||+.++..+..++.. .....|..+|.++.|.+....=++++.++ .+..|++.
T Consensus 157 ~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~d-kl~~~Sl~ 235 (323)
T KOG0322|consen 157 DKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADD-KLVMYSLN 235 (323)
T ss_pred eccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccc-cceeeeec
Confidence 533 12 2788999999999999998655443322 23456889999999986655556777775 78888886
Q ss_pred C--CeEEE--Eec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCC
Q 001349 1013 N--YNMVG--SLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSD 1085 (1094)
Q Consensus 1013 ~--~~~~~--~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~D 1085 (1094)
. +.+.. .+. .+-.+..+.+-|| .++++++|+.||||+.++..++..++ -|.+.|++++|+||...+++++.|
T Consensus 236 ~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLk-yHsagvn~vAfspd~~lmAaaskD 314 (323)
T KOG0322|consen 236 HSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLK-YHSAGVNAVAFSPDCELMAAASKD 314 (323)
T ss_pred cccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhh-hhhcceeEEEeCCCCchhhhccCC
Confidence 4 32221 111 3455777788887 89999999999999999999999994 799999999999999999999999
Q ss_pred CcEEEEeC
Q 001349 1086 GRIQAWGL 1093 (1094)
Q Consensus 1086 G~I~iWdl 1093 (1094)
++|.+|++
T Consensus 315 ~rISLWkL 322 (323)
T KOG0322|consen 315 ARISLWKL 322 (323)
T ss_pred ceEEeeec
Confidence 99999986
No 145
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.74 E-value=3.8e-17 Score=178.29 Aligned_cols=247 Identities=14% Similarity=0.165 Sum_probs=190.7
Q ss_pred EEEEeeCCCCeEEEeCCcc----eeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEE
Q 001349 787 KVLSNGHDSSADFWNHREL----VHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTG 860 (1094)
Q Consensus 787 ~l~s~s~dg~I~vWd~~~~----~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~s 860 (1094)
.+++.+.|..+++|.-... ..+.......-.|++.... ++++|+..|+|+|||++.. .+.+.+++|+..|++
T Consensus 49 vvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k--l~hr~lkdh~stvt~ 126 (673)
T KOG4378|consen 49 VVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAK--LIHRFLKDHQSTVTY 126 (673)
T ss_pred EEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHH--HHhhhccCCcceeEE
Confidence 4455677889999976522 1111122223445555443 9999999999999999966 678889999999999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceE
Q 001349 861 LAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKC 940 (1094)
Q Consensus 861 v~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~ 940 (1094)
|.++....+||+++..|.|.|..+.++.......++....|.-+. |+|..+.
T Consensus 127 v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~-------ys~skr~--------------------- 178 (673)
T KOG4378|consen 127 VDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLR-------YSPSKRF--------------------- 178 (673)
T ss_pred EEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEee-------cccccce---------------------
Confidence 999999999999999999999999987533333333333333333 4444443
Q ss_pred EEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeC-CccEEEEEECCCCEEEEEECCCCeEEEE
Q 001349 941 LALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN-GLVYTASTSLDGAAVKMWSTSNYNMVGS 1019 (1094)
Q Consensus 941 l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~-~~~~las~s~Dg~~I~iwd~~~~~~~~~ 1019 (1094)
.|.+++.+|.|.+||+....++. .-...|..+...++|+| +..++++.+.| +.|.+||++.......
T Consensus 179 ------lL~~asd~G~VtlwDv~g~sp~~-----~~~~~HsAP~~gicfspsne~l~vsVG~D-kki~~yD~~s~~s~~~ 246 (673)
T KOG4378|consen 179 ------LLSIASDKGAVTLWDVQGMSPIF-----HASEAHSAPCRGICFSPSNEALLVSVGYD-KKINIYDIRSQASTDR 246 (673)
T ss_pred ------eeEeeccCCeEEEEeccCCCccc-----chhhhccCCcCcceecCCccceEEEeccc-ceEEEeecccccccce
Confidence 37889999999999998776653 33457999999999997 56678888888 4999999998888888
Q ss_pred ecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCc-EEEEecccCCcceEEEEEcCCC
Q 001349 1020 LPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQI-RIETLQTGTSGKVQCMALDDNE 1076 (1094)
Q Consensus 1020 ~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~-~~~~l~~~h~~~I~~l~~Spdg 1076 (1094)
+.-..+...++|+++ ++++|+..|.|..||++..+ ++.++ ..|...|++++|-|.-
T Consensus 247 l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~-sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 247 LTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVR-SAHDASVTRVAFQPSP 305 (673)
T ss_pred eeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEe-eecccceeEEEeeecc
Confidence 888888999999998 79999999999999998654 66666 6899999999997753
No 146
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=6.4e-17 Score=168.24 Aligned_cols=209 Identities=19% Similarity=0.312 Sum_probs=150.0
Q ss_pred EEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCce---EEEEecccCccceeeeecCceEEEeeCCCeEEEEEe
Q 001349 849 QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEI---HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLR 925 (1094)
Q Consensus 849 ~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~---~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~ 925 (1094)
..+++|.+.|++++|+.||++|+|++.|++|++|+++.-+. +++...-.-+. +..+.|+||-+-+++...
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dh-------pT~V~FapDc~s~vv~~~ 152 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDH-------PTRVVFAPDCKSVVVSVK 152 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCC-------ceEEEECCCcceEEEEEc
Confidence 45689999999999999999999999999999999987331 11111111112 233448888776544332
Q ss_pred CCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCC---CceeEEe---ccceeecCCCCCeEEEEEeCCccEEEEE
Q 001349 926 NGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLAT---GTFATIQ---TGHRKLLGKANPVHALQVHNGLVYTAST 999 (1094)
Q Consensus 926 ~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~---~~~~~~~---~~~~~~~~h~~~V~sl~fs~~~~~las~ 999 (1094)
...++++|.+.. |.....+ ....--..|...+..+-.-.++.+++++
T Consensus 153 ---------------------------~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsa 205 (420)
T KOG2096|consen 153 ---------------------------RGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSA 205 (420)
T ss_pred ---------------------------cCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEe
Confidence 334455554432 1111111 0001123355677777778999999999
Q ss_pred ECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECC---CC-----cEEEEecccCCcceE
Q 001349 1000 SLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQK---RQ-----IRIETLQTGTSGKVQ 1068 (1094)
Q Consensus 1000 s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~---t~-----~~~~~l~~~h~~~I~ 1068 (1094)
+.|. .|.+||++ |+.+.++. ....-...++||+ ++++++..-.|+||.+- .| ..+..+ .||...|.
T Consensus 206 s~dt-~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~L-kGH~saV~ 282 (420)
T KOG2096|consen 206 SLDT-KICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSL-KGHQSAVL 282 (420)
T ss_pred cCCC-cEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhhee-ccchhhee
Confidence 9985 99999998 88888887 4455667788998 78888889999999853 22 245566 59999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1069 CMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1069 ~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
.++||++...++|.+.||+++|||++
T Consensus 283 ~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 283 AAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred eeeeCCCcceeEEEecCCcEEEeecc
Confidence 99999999999999999999999974
No 147
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.74 E-value=1.4e-16 Score=173.00 Aligned_cols=271 Identities=18% Similarity=0.228 Sum_probs=183.8
Q ss_pred ccCcEEEEeeCC---CCeEEEeCCcce-eecccC----CCcEEEEEEeC---------CEEEEEECCCeEEEEecCCCc-
Q 001349 783 FEMVKVLSNGHD---SSADFWNHRELV-HVDSSE----NGKVLSIACFR---------DKIFSGHSDGTIKVWTGRGSI- 844 (1094)
Q Consensus 783 ~d~~~l~s~s~d---g~I~vWd~~~~~-~~~~~h----~~~V~~l~fsp---------d~LaSgs~Dg~I~vWd~~t~~- 844 (1094)
+..+.|+++-.+ ..+.+|-+.+.- ..+..| .....|+.|.. +++|.|+.|..|.|||+.-..
T Consensus 135 psDnlIl~ar~eddvs~LEvYVyn~~e~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~ 214 (463)
T KOG0270|consen 135 PSDNLILCARNEDDVSYLEVYVYNEEEENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDA 214 (463)
T ss_pred cCCcEEEEeeccCCceEEEEEEEcCCCcceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccc
Confidence 335555555443 345555554222 223333 23346777742 499999999999999975210
Q ss_pred ceeEEE------------------ecccCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeee
Q 001349 845 LHLIQQ------------------IREHTKAVTGLAILQS-GEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLA 905 (1094)
Q Consensus 845 ~~~~~~------------------l~~H~~~V~sv~fspd-g~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~ 905 (1094)
..+..+ -.+|++.|.+++|+.. .+.|+|||.|.||++||+.+|+...... .+...|.++.
T Consensus 215 v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~-~~~k~Vq~l~ 293 (463)
T KOG0270|consen 215 VLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT-HHGKKVQTLE 293 (463)
T ss_pred cccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehh-hcCCceeEEE
Confidence 011111 2379999999999874 6789999999999999999986433222 2455555555
Q ss_pred ecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeE
Q 001349 906 VSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVH 985 (1094)
Q Consensus 906 ~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~ 985 (1094)
|.|.. +..+++|+.|++|.+.|.+..... .......+.|-
T Consensus 294 -------wh~~~---------------------------p~~LLsGs~D~~V~l~D~R~~~~s------~~~wk~~g~VE 333 (463)
T KOG0270|consen 294 -------WHPYE---------------------------PSVLLSGSYDGTVALKDCRDPSNS------GKEWKFDGEVE 333 (463)
T ss_pred -------ecCCC---------------------------ceEEEeccccceEEeeeccCcccc------CceEEeccceE
Confidence 33222 135899999999999999953222 12222346789
Q ss_pred EEEEeCCccEEEEEECCCCEEEEEECCCC-eEEEEec-CCCCEEEEEEeCC---EEEEEEcCCeEEEEECCCCcEEEEec
Q 001349 986 ALQVHNGLVYTASTSLDGAAVKMWSTSNY-NMVGSLP-TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIRIETLQ 1060 (1094)
Q Consensus 986 sl~fs~~~~~las~s~Dg~~I~iwd~~~~-~~~~~~~-~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~~~~~~l~ 1060 (1094)
.++|++.....+.++.|+++|+-+|+++. +++.++. |.+.|.++++++. ++++++.|+.|++|++..-..-....
T Consensus 334 kv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~ 413 (463)
T KOG0270|consen 334 KVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKE 413 (463)
T ss_pred EEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccc
Confidence 99998776655555555569999999974 8999988 8999999999865 89999999999999986543321110
Q ss_pred -ccCCcceEEEEEcCCCC-EEEEEeCCCcEEEEeCC
Q 001349 1061 -TGTSGKVQCMALDDNEE-FLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1061 -~~h~~~I~~l~~Spdg~-~L~sgs~DG~I~iWdls 1094 (1094)
.-.-+...|.++.|+-. +++.|+..+.++|||+.
T Consensus 414 ~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~ 449 (463)
T KOG0270|consen 414 HSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIF 449 (463)
T ss_pred ccccccceeecccCCCcceEEEecCccceEEEeecc
Confidence 11123467777877664 57788888899999973
No 148
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.73 E-value=3.3e-16 Score=168.39 Aligned_cols=281 Identities=17% Similarity=0.230 Sum_probs=188.9
Q ss_pred EEEEeeCCCCeEEEeCC-----------cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecC--------C---
Q 001349 787 KVLSNGHDSSADFWNHR-----------ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGR--------G--- 842 (1094)
Q Consensus 787 ~l~s~s~dg~I~vWd~~-----------~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~--------t--- 842 (1094)
+++||+.|..|++|.+. .....+..|+..|+++.|+|+ .++||+.+|.|.+|... +
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~ 107 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEAD 107 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhh
Confidence 89999999999999765 123457789999999999997 99999999999999765 2
Q ss_pred ---CcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCe
Q 001349 843 ---SILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAG 919 (1094)
Q Consensus 843 ---~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~ 919 (1094)
..+...+.+.+|...|..++|+||+.++++++.|.++++||+..|.+.. ...+|..-+..++ |.|-+++
T Consensus 108 ~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~-~~~dh~~yvqgva-------wDpl~qy 179 (434)
T KOG1009|consen 108 LNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLA-ILDDHEHYVQGVA-------WDPLNQY 179 (434)
T ss_pred hCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEe-eccccccccceee-------cchhhhh
Confidence 2256667788999999999999999999999999999999999986333 3345666677776 8888888
Q ss_pred EEEEEeCCeEEEEcC--CCCceEEEEe--CCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccE
Q 001349 920 IKVHLRNGKTKLLNS--SKYPKCLALV--QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVY 995 (1094)
Q Consensus 920 l~~~~~~g~i~l~~~--~~~v~~l~~s--~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~ 995 (1094)
+++.+.+...+.+.. ...+.++... +....-.......++|.=++.+ .-...++|+|++.+
T Consensus 180 v~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlk---------------sFFrRlsfTPdG~l 244 (434)
T KOG1009|consen 180 VASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLK---------------SFFRRLSFTPDGSL 244 (434)
T ss_pred hhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchh---------------hhhhhcccCCCCcE
Confidence 877777664333322 2222332210 0111111111222333222211 12345667788877
Q ss_pred EEEEEC----CC----CEEEEEECCC-CeEEEEec-CCCCEEEEEEeC------------------C-EEEEEEcCCeEE
Q 001349 996 TASTSL----DG----AAVKMWSTSN-YNMVGSLP-TLSEVRAMVVSS------------------E-LVYLGCKGGTVE 1046 (1094)
Q Consensus 996 las~s~----Dg----~~I~iwd~~~-~~~~~~~~-~~~~v~~l~~sp------------------d-~l~sgs~dg~I~ 1046 (1094)
+++.+. ++ ++.++|+-.. .++...++ .......+.++| - .+++....+.|+
T Consensus 245 lvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svy 324 (434)
T KOG1009|consen 245 LVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVY 324 (434)
T ss_pred EEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEE
Confidence 776421 11 1234444332 22333333 223344444443 1 233334456899
Q ss_pred EEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEE
Q 001349 1047 IWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQA 1090 (1094)
Q Consensus 1047 vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~i 1090 (1094)
|||.++..++.....-|-..|++++|++||.+|+..|.||...+
T Consensus 325 vydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 325 VYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred EeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence 99999999998887789999999999999999999999997654
No 149
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.72 E-value=1.2e-15 Score=173.32 Aligned_cols=322 Identities=19% Similarity=0.220 Sum_probs=226.6
Q ss_pred HHHHHHHhhhccccccccccCcEEEEeeCCCCeEEEeCCcc--ee-------ecccCCCcEEEEEEeCC--EEEEEECCC
Q 001349 765 MKDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHREL--VH-------VDSSENGKVLSIACFRD--KIFSGHSDG 833 (1094)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~~--~~-------~~~~h~~~V~~l~fspd--~LaSgs~Dg 833 (1094)
....+.+|...+....+++++..|++++.|.++.+|...+. +. ...+..+..+...|+|+ .+++-+..|
T Consensus 259 ~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~G 338 (764)
T KOG1063|consen 259 FEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTG 338 (764)
T ss_pred hhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccC
Confidence 44566788889999999999999999999999999987632 11 12234567899999997 788999999
Q ss_pred eEEEEecC-CCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc--eEEE-EecccCccceeeeecCc
Q 001349 834 TIKVWTGR-GSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE--IHCV-QVHDIKDQIQNLAVSNS 909 (1094)
Q Consensus 834 ~I~vWd~~-t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~--~~~~-~~~~~~~~V~~v~~~~~ 909 (1094)
-.++|... ...+.....+.||.+.|.+++|+|.|.+|+|+|.|.|-|++---..+ .+.+ ...-|.-.+.++++-+.
T Consensus 339 g~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~ 418 (764)
T KOG1063|consen 339 GFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE 418 (764)
T ss_pred cEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC
Confidence 99999833 33345556678999999999999999999999999999997654222 1111 11112223333332221
Q ss_pred eEEE-----------------------------------eeCCCeEEEEE-----------eCCe---------------
Q 001349 910 ILCF-----------------------------------IPQGAGIKVHL-----------RNGK--------------- 928 (1094)
Q Consensus 910 ~~~f-----------------------------------spdg~~l~~~~-----------~~g~--------------- 928 (1094)
...| .|+|..+-... .+|.
T Consensus 419 ~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~ 498 (764)
T KOG1063|consen 419 DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPC 498 (764)
T ss_pred CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCch
Confidence 0001 11111110000 0000
Q ss_pred --------------------EEEEcCCCCceEEEEeC--CEEEEEEcCC-----eEEEEECCCCceeEEeccceeecCCC
Q 001349 929 --------------------TKLLNSSKYPKCLALVQ--GKVYCGCQDG-----AIQEIDLATGTFATIQTGHRKLLGKA 981 (1094)
Q Consensus 929 --------------------i~l~~~~~~v~~l~~s~--~~l~sgs~Dg-----~I~iwDl~~~~~~~~~~~~~~~~~h~ 981 (1094)
-++|.|.-.|.+++.++ +.+++++... .|++|+..+-... ..+.+|+
T Consensus 499 ~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~------~~L~~Hs 572 (764)
T KOG1063|consen 499 ELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQV------QELEGHS 572 (764)
T ss_pred hccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhh------heecccc
Confidence 02333455689999985 4577776654 5899998776655 5678899
Q ss_pred CCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeE-EEE---ec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCC-
Q 001349 982 NPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNM-VGS---LP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQ- 1053 (1094)
Q Consensus 982 ~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~-~~~---~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~- 1053 (1094)
-.|+.++|+||+.++++.+.| +++.+|....... -.. .+ |...|+...|+|+ +++++|.|.+|.||.....
T Consensus 573 LTVT~l~FSpdg~~LLsvsRD-Rt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~ 651 (764)
T KOG1063|consen 573 LTVTRLAFSPDGRYLLSVSRD-RTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLR 651 (764)
T ss_pred eEEEEEEECCCCcEEEEeecC-ceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCch
Confidence 999999999999999999999 5999999854321 111 22 6778999999999 8999999999999998877
Q ss_pred -cEEEEe-cccCCcceEEEEEcC-----CCCEEEEEeCCCcEEEEeC
Q 001349 1054 -IRIETL-QTGTSGKVQCMALDD-----NEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1054 -~~~~~l-~~~h~~~I~~l~~Sp-----dg~~L~sgs~DG~I~iWdl 1093 (1094)
+.+..+ -..+...|+.++|.| .+..++.|-..|.|.+|..
T Consensus 652 d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~ 698 (764)
T KOG1063|consen 652 DKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRR 698 (764)
T ss_pred hhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEec
Confidence 433331 124778999999976 2337788889999999974
No 150
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.72 E-value=2.1e-16 Score=172.65 Aligned_cols=257 Identities=14% Similarity=0.171 Sum_probs=185.1
Q ss_pred EeeCCCCeEEEeCC--cceeecccC--CCcEEEEEEeCC-EEEE--EECCCeEEEEecCC--CcceeEEEecccCCCeEE
Q 001349 790 SNGHDSSADFWNHR--ELVHVDSSE--NGKVLSIACFRD-KIFS--GHSDGTIKVWTGRG--SILHLIQQIREHTKAVTG 860 (1094)
Q Consensus 790 s~s~dg~I~vWd~~--~~~~~~~~h--~~~V~~l~fspd-~LaS--gs~Dg~I~vWd~~t--~~~~~~~~l~~H~~~V~s 860 (1094)
.++....+++||+. +....+..| .-.+.++.|+.. .|++ .+.|..|++|.-.+ +....+....+. .-.|
T Consensus 7 ~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~C 84 (673)
T KOG4378|consen 7 VASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFC 84 (673)
T ss_pred eeccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHH
Confidence 34445578999987 222222222 234899999875 4444 45788999996543 333334444333 3344
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceE
Q 001349 861 LAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKC 940 (1094)
Q Consensus 861 v~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~ 940 (1094)
++......++++|+..+.|+|||++.. +......+|.+.|.++
T Consensus 85 v~~~s~S~y~~sgG~~~~Vkiwdl~~k-l~hr~lkdh~stvt~v------------------------------------ 127 (673)
T KOG4378|consen 85 VACASQSLYEISGGQSGCVKIWDLRAK-LIHRFLKDHQSTVTYV------------------------------------ 127 (673)
T ss_pred HhhhhcceeeeccCcCceeeehhhHHH-HHhhhccCCcceeEEE------------------------------------
Confidence 444445589999999999999999853 2222223344444444
Q ss_pred EEEe--CCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEE
Q 001349 941 LALV--QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVG 1018 (1094)
Q Consensus 941 l~~s--~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~ 1018 (1094)
.++ +.+|++++..|.|.+..+.++.....+.. +....|.-+.|++...++.+...|++.|.+||+....++.
T Consensus 128 -~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~-----~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~ 201 (673)
T KOG4378|consen 128 -DYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTI-----DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIF 201 (673)
T ss_pred -EecCCcceeEEeccCCcEEEEecccCccccceec-----CCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCccc
Confidence 443 34689999999999999998876533221 1234567899998877666655555699999999888887
Q ss_pred Eec--CCCCEEEEEEeCC---EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1019 SLP--TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1019 ~~~--~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
.+. |..+...++|+|. ++++.+.|..|.+||..+.....++. ...+.+.++|+++|.+|++|+..|.|..||+
T Consensus 202 ~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~--y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~ 279 (673)
T KOG4378|consen 202 HASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT--YSHPLSTVAFSECGTYLCAGNSKGELIAYDM 279 (673)
T ss_pred chhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee--ecCCcceeeecCCceEEEeecCCceEEEEec
Confidence 776 8888999999987 89999999999999999888887774 3447999999999999999999999999997
No 151
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.71 E-value=9.2e-16 Score=171.36 Aligned_cols=109 Identities=15% Similarity=0.259 Sum_probs=93.3
Q ss_pred CCeEEEEEeC-CccEEEEEECCCCEEEEEECCCC-------eEEEEec-CCCCEEEEEEeC---CEEEEEEcCCeEEEEE
Q 001349 982 NPVHALQVHN-GLVYTASTSLDGAAVKMWSTSNY-------NMVGSLP-TLSEVRAMVVSS---ELVYLGCKGGTVEIWD 1049 (1094)
Q Consensus 982 ~~V~sl~fs~-~~~~las~s~Dg~~I~iwd~~~~-------~~~~~~~-~~~~v~~l~~sp---d~l~sgs~dg~I~vwd 1049 (1094)
..|+.+.|+| |...++.++.|| .|++|.+..+ .+...+. |...|+++.|+| |.+++++.|-+|++||
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg-~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD 706 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDG-QINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD 706 (1012)
T ss_pred ceeeecccCCCChHHeeecccCc-eEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence 5688888886 455667777776 9999998753 2334455 778899999998 4899999999999999
Q ss_pred CCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1050 QKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1050 ~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
+.+++....+ .+|.+.|.+++|||||+.+++.+.||+|++|+
T Consensus 707 l~~~~~~~~l-~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~ 748 (1012)
T KOG1445|consen 707 LANAKLYSRL-VGHTDQIFGIAWSPDGRRIATVCKDGTLRVYE 748 (1012)
T ss_pred hhhhhhhhee-ccCcCceeEEEECCCCcceeeeecCceEEEeC
Confidence 9999988888 69999999999999999999999999999985
No 152
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.71 E-value=6e-16 Score=161.53 Aligned_cols=272 Identities=16% Similarity=0.201 Sum_probs=195.7
Q ss_pred ccccccccccCcEEEEeeCCCCeEEEeCCcce---------------eecccCCCcEEEEEEeC-------C--EEEEEE
Q 001349 775 LRKYSPLAFEMVKVLSNGHDSSADFWNHRELV---------------HVDSSENGKVLSIACFR-------D--KIFSGH 830 (1094)
Q Consensus 775 ~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~~~---------------~~~~~h~~~V~~l~fsp-------d--~LaSgs 830 (1094)
+-+.+.+++||..|++-+.|..+.+|++..-. .........|...+|-+ + ++++.+
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 34567899999999999999999999976100 01111346778888863 2 899999
Q ss_pred CCCeEEEEecCCCcceeEEEecccCCC---eEEEEEecCCCEEEEEeCCCcEEEEEC-CCCceEEEEecccCccceeeee
Q 001349 831 SDGTIKVWTGRGSILHLIQQIREHTKA---VTGLAILQSGEMLYSGSLDKTARVWSI-GNEEIHCVQVHDIKDQIQNLAV 906 (1094)
Q Consensus 831 ~Dg~I~vWd~~t~~~~~~~~l~~H~~~---V~sv~fspdg~~LaSgs~DgtI~vWdi-~~~~~~~~~~~~~~~~V~~v~~ 906 (1094)
.|.-|++||.-+|+.+.-...-.|.+. ..++.|+|||.+|+.|- ...|+++|+ +.|. ..++....
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr---------~c~vy~t~- 199 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGR---------DCPVYTTV- 199 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCC---------CCcchhhh-
Confidence 999999999999954444333345554 46899999999998765 578999999 5553 11111111
Q ss_pred cCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC---CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCC
Q 001349 907 SNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ---GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANP 983 (1094)
Q Consensus 907 ~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~---~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~ 983 (1094)
+ .|+ +...+-+.|++|+| +.+++|+...++-+|.-..+.+. ..+.+|.+.
T Consensus 200 ------~--~~k-------------~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl------~llggh~gG 252 (406)
T KOG2919|consen 200 ------T--KGK-------------FGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPL------QLLGGHGGG 252 (406)
T ss_pred ------h--ccc-------------ccccceeeeeeccCCCCcceeeecccceeeeEecCCCCce------eeecccCCC
Confidence 0 000 01123345666664 35889999999999988877777 456689999
Q ss_pred eEEEEEeCCccEEEEEECCCCEEEEEECCC-CeEEEEec-CCC-CEEEEEE--eCC--EEEEEEcCCeEEEEECCC-CcE
Q 001349 984 VHALQVHNGLVYTASTSLDGAAVKMWSTSN-YNMVGSLP-TLS-EVRAMVV--SSE--LVYLGCKGGTVEIWDQKR-QIR 1055 (1094)
Q Consensus 984 V~sl~fs~~~~~las~s~Dg~~I~iwd~~~-~~~~~~~~-~~~-~v~~l~~--spd--~l~sgs~dg~I~vwd~~t-~~~ 1055 (1094)
|+.+.|++++..+.+|+..+-.|-.||++. +.++..+. |.. .-..|-| .|+ ++++|+.||.|++||+++ |..
T Consensus 253 vThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~ 332 (406)
T KOG2919|consen 253 VTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNE 332 (406)
T ss_pred eeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCc
Confidence 999999999999999887656999999986 44555554 222 2223344 444 899999999999999998 666
Q ss_pred EEEecccCCcceEEEEEcCCCCEEEEEeCC
Q 001349 1056 IETLQTGTSGKVQCMALDDNEEFLVIGTSD 1085 (1094)
Q Consensus 1056 ~~~l~~~h~~~I~~l~~Spdg~~L~sgs~D 1085 (1094)
+..+ ..|+..++.++++|-=.+++|++..
T Consensus 333 ~sv~-~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 333 VSVT-GNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred cccc-ccccccccceecCcccceeeeccCc
Confidence 7777 4788899999999988888887654
No 153
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=4.6e-17 Score=195.06 Aligned_cols=261 Identities=16% Similarity=0.200 Sum_probs=194.6
Q ss_pred eCCCCeEEEeCCc--ce----e-ecccCCCcEEEEEEeCC------EEEEEECCCeEEEEecCC----CcceeEEEeccc
Q 001349 792 GHDSSADFWNHRE--LV----H-VDSSENGKVLSIACFRD------KIFSGHSDGTIKVWTGRG----SILHLIQQIREH 854 (1094)
Q Consensus 792 s~dg~I~vWd~~~--~~----~-~~~~h~~~V~~l~fspd------~LaSgs~Dg~I~vWd~~t----~~~~~~~~l~~H 854 (1094)
+.+.++.+|.+.. .. . .-..-....+.++|.+. +|+.|..||.|.+||... +....+.+...|
T Consensus 36 st~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h 115 (1049)
T KOG0307|consen 36 STSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKH 115 (1049)
T ss_pred ccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhccc
Confidence 5566777776651 11 1 11123467789999862 699999999999999754 344567788899
Q ss_pred CCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEc
Q 001349 855 TKAVTGLAILQS-GEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN 933 (1094)
Q Consensus 855 ~~~V~sv~fspd-g~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~ 933 (1094)
++.|..+.|++. +++|++|+.||.|.|||++.-+. + |++.+. .
T Consensus 116 ~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~t----------P------------~~~~~~--------------~ 159 (1049)
T KOG0307|consen 116 TGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPET----------P------------FTPGSQ--------------A 159 (1049)
T ss_pred CCceeeeeccccCCceeeccCCCCcEEEeccCCcCC----------C------------CCCCCC--------------C
Confidence 999999999995 56999999999999999987320 0 222111 1
Q ss_pred CCCCceEEEEeC---CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCcc-EEEEEECCCC--EEE
Q 001349 934 SSKYPKCLALVQ---GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLV-YTASTSLDGA--AVK 1007 (1094)
Q Consensus 934 ~~~~v~~l~~s~---~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~-~las~s~Dg~--~I~ 1007 (1094)
....|.+++|+. ..+++|+.+|.+.|||++..+.+..+..+ +-...+..+.|||+.. .++.++.|++ .|.
T Consensus 160 ~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~----~~~~~~S~l~WhP~~aTql~~As~dd~~Pviq 235 (1049)
T KOG0307|consen 160 PPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDT----PGRMHCSVLAWHPDHATQLLVASGDDSAPVIQ 235 (1049)
T ss_pred CcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccC----CCccceeeeeeCCCCceeeeeecCCCCCceeE
Confidence 234456666654 23889999999999999988766332211 1123578999998743 4444554443 899
Q ss_pred EEECCC-CeEEEEec-CCCCEEEEEEeCC---EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCC-EEEE
Q 001349 1008 MWSTSN-YNMVGSLP-TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEE-FLVI 1081 (1094)
Q Consensus 1008 iwd~~~-~~~~~~~~-~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~-~L~s 1081 (1094)
+||++. ..+++.+. |...|.++.|++. ++++++.|+.|.+|+.++++.+..+. ...+++..+.|.|... .+++
T Consensus 236 lWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p-~~~nW~fdv~w~pr~P~~~A~ 314 (1049)
T KOG0307|consen 236 LWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP-AQGNWCFDVQWCPRNPSVMAA 314 (1049)
T ss_pred eecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC-CCCcceeeeeecCCCcchhhh
Confidence 999985 45677775 7889999999875 89999999999999999999999995 4667999999999876 7888
Q ss_pred EeCCCcEEEEeC
Q 001349 1082 GTSDGRIQAWGL 1093 (1094)
Q Consensus 1082 gs~DG~I~iWdl 1093 (1094)
++.||.|.|+.+
T Consensus 315 asfdgkI~I~sl 326 (1049)
T KOG0307|consen 315 ASFDGKISIYSL 326 (1049)
T ss_pred heeccceeeeee
Confidence 899999999976
No 154
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.71 E-value=6.6e-18 Score=145.75 Aligned_cols=72 Identities=44% Similarity=0.828 Sum_probs=62.1
Q ss_pred CCCceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHHHHhCC
Q 001349 160 PPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNP 232 (1094)
Q Consensus 160 ~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~~~~~ 232 (1094)
+|++|.||||+++|.|||+++|||||||.||++|+..++..||.|++.++..++. ||..|++.|+.|+.++.
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~-pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLI-PNRALKSAIEEWCAENK 72 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSE-E-HHHHHHHHHHHHHCT
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccce-ECHHHHHHHHHHHHHcc
Confidence 5789999999999999999999999999999999998777899999999999997 99999999999998864
No 155
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=8.1e-17 Score=162.26 Aligned_cols=203 Identities=18% Similarity=0.233 Sum_probs=144.3
Q ss_pred eecccCCCcEEEE--EEeCCEEEEEECCCeEEEEecCCCcc-eeEEEecccCCCeEEEEEec--CCCEEEEEeCCCcEEE
Q 001349 807 HVDSSENGKVLSI--ACFRDKIFSGHSDGTIKVWTGRGSIL-HLIQQIREHTKAVTGLAILQ--SGEMLYSGSLDKTARV 881 (1094)
Q Consensus 807 ~~~~~h~~~V~~l--~fspd~LaSgs~Dg~I~vWd~~t~~~-~~~~~l~~H~~~V~sv~fsp--dg~~LaSgs~DgtI~v 881 (1094)
.+...|.+.|..+ .|....|+|++.|++|+|+.+..+.. ..+.++.||.++|+.++|.. -|.+|+|++.||.|.|
T Consensus 5 ~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIi 84 (299)
T KOG1332|consen 5 TIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVII 84 (299)
T ss_pred ehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEE
Confidence 3455787777654 45667999999999999999987643 68899999999999999975 7999999999999999
Q ss_pred EECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEE
Q 001349 882 WSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEID 961 (1094)
Q Consensus 882 Wdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwD 961 (1094)
|.-.+|.....
T Consensus 85 Wke~~g~w~k~--------------------------------------------------------------------- 95 (299)
T KOG1332|consen 85 WKEENGRWTKA--------------------------------------------------------------------- 95 (299)
T ss_pred EecCCCchhhh---------------------------------------------------------------------
Confidence 99888641111
Q ss_pred CCCCceeEEeccceeecCCCCCeEEEEEeC--CccEEEEEECCCCEEEEEECCCC--eEEEEe--cCCCCEEEEEEeCC-
Q 001349 962 LATGTFATIQTGHRKLLGKANPVHALQVHN--GLVYTASTSLDGAAVKMWSTSNY--NMVGSL--PTLSEVRAMVVSSE- 1034 (1094)
Q Consensus 962 l~~~~~~~~~~~~~~~~~h~~~V~sl~fs~--~~~~las~s~Dg~~I~iwd~~~~--~~~~~~--~~~~~v~~l~~spd- 1034 (1094)
.....|...|++++|-| -+..+++++.|| .|.|.+.++. .....+ .|.-.|++++|.|.
T Consensus 96 -------------~e~~~h~~SVNsV~wapheygl~LacasSDG-~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~ 161 (299)
T KOG1332|consen 96 -------------YEHAAHSASVNSVAWAPHEYGLLLACASSDG-KVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPAS 161 (299)
T ss_pred -------------hhhhhhcccceeecccccccceEEEEeeCCC-cEEEEEEcCCCCccchhhhhccccccceeeecCcC
Confidence 11123444444554433 234444555554 4555444322 111111 15555666666542
Q ss_pred ---------------EEEEEEcCCeEEEEECCCCc--EEEEecccCCcceEEEEEcCCC----CEEEEEeCCCcEEEEeC
Q 001349 1035 ---------------LVYLGCKGGTVEIWDQKRQI--RIETLQTGTSGKVQCMALDDNE----EFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1035 ---------------~l~sgs~dg~I~vwd~~t~~--~~~~l~~~h~~~I~~l~~Spdg----~~L~sgs~DG~I~iWdl 1093 (1094)
.+++|+.|+.|+||+..++. .-.++ .+|.+.|..++|.|.- .+|++++.||+|.||..
T Consensus 162 ~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l-~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~ 240 (299)
T KOG1332|consen 162 APGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTL-EGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTK 240 (299)
T ss_pred CCccccccCcccccceeeccCCccceeeeecCCcchhhhhhh-hhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEe
Confidence 49999999999999998763 33345 6999999999999964 58999999999999963
No 156
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.71 E-value=5.8e-16 Score=162.19 Aligned_cols=268 Identities=16% Similarity=0.265 Sum_probs=188.1
Q ss_pred CcEEEEeeCCCCeEEEeCCc-----ceee--cccCCCcEEEEEEeC-----C-EEEEEECCCeEEEEecCCCcceeEEEe
Q 001349 785 MVKVLSNGHDSSADFWNHRE-----LVHV--DSSENGKVLSIACFR-----D-KIFSGHSDGTIKVWTGRGSILHLIQQI 851 (1094)
Q Consensus 785 ~~~l~s~s~dg~I~vWd~~~-----~~~~--~~~h~~~V~~l~fsp-----d-~LaSgs~Dg~I~vWd~~t~~~~~~~~l 851 (1094)
...+++.|. +.+.+|+... ..+. ...|......++|+- + ++|.|+.-|.|+|.|+.++ ++...+
T Consensus 55 ~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~--~~~~~~ 131 (385)
T KOG1034|consen 55 PQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSG--QCSKNY 131 (385)
T ss_pred CceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchh--hhccce
Confidence 345555554 4566777651 1222 224777888889873 3 8999999999999999999 789999
Q ss_pred cccCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCceEEEEe--cccCccceeeeecCceEEEeeCCCeEEEEEeCCe
Q 001349 852 REHTKAVTGLAILQS-GEMLYSGSLDKTARVWSIGNEEIHCVQV--HDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGK 928 (1094)
Q Consensus 852 ~~H~~~V~sv~fspd-g~~LaSgs~DgtI~vWdi~~~~~~~~~~--~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~ 928 (1094)
.+|...|+.+.|+|+ .++++++|.|.+||+|++.++....+.. ..|.+.|.++. |+++|..
T Consensus 132 ~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD-------~~~~gd~--------- 195 (385)
T KOG1034|consen 132 RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVD-------FSLDGDR--------- 195 (385)
T ss_pred eccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEE-------EcCCCCe---------
Confidence 999999999999994 6899999999999999999985333332 24778888888 8888875
Q ss_pred EEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeE----------------------EeccceeecCCCCCeEE
Q 001349 929 TKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFAT----------------------IQTGHRKLLGKANPVHA 986 (1094)
Q Consensus 929 i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~----------------------~~~~~~~~~~h~~~V~s 986 (1094)
+++++.|.++++|++...+... .++...+-..|...|.|
T Consensus 196 -------------------i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDC 256 (385)
T KOG1034|consen 196 -------------------IASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDC 256 (385)
T ss_pred -------------------eeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHH
Confidence 6666777777777765322110 00100122346677777
Q ss_pred EEEeCCccEEEEEECCCCEEEEEECC-CCe-------------EEEEec-CCCCEEEEEEeCC----EEEEEEcCCeEEE
Q 001349 987 LQVHNGLVYTASTSLDGAAVKMWSTS-NYN-------------MVGSLP-TLSEVRAMVVSSE----LVYLGCKGGTVEI 1047 (1094)
Q Consensus 987 l~fs~~~~~las~s~Dg~~I~iwd~~-~~~-------------~~~~~~-~~~~v~~l~~spd----~l~sgs~dg~I~v 1047 (1094)
+.|.. .++++-+-++ .|..|... -++ ....+. ....++-+.|.-| .++.|...|.|++
T Consensus 257 vrw~g--d~ilSkscen-aI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~v 333 (385)
T KOG1034|consen 257 VRWFG--DFILSKSCEN-AIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYV 333 (385)
T ss_pred HHHHh--hheeecccCc-eEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEE
Confidence 77765 4556666665 89999872 111 122233 2345666666554 7999999999999
Q ss_pred EECCCCcEE--EEec-ccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1048 WDQKRQIRI--ETLQ-TGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1048 wd~~t~~~~--~~l~-~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
||++...+. .++. ......|...+||.||.+|+..++||+|.-||-
T Consensus 334 wdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 334 WDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred EECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 999876542 2221 122347999999999999999999999999983
No 157
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=3.7e-16 Score=170.20 Aligned_cols=278 Identities=12% Similarity=0.164 Sum_probs=209.4
Q ss_pred HHHHHHHhhhcccccccccc--CcEEEEeeCCCCeEEEeCC----cceeecccCCCcEEEEEEeCC---EEEEEECCCeE
Q 001349 765 MKDIMKGLRELRKYSPLAFE--MVKVLSNGHDSSADFWNHR----ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTI 835 (1094)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~d--~~~l~s~s~dg~I~vWd~~----~~~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I 835 (1094)
++|+...+........++|. -..++++|.||++++|.++ ..++.+.-...+|.+..|.|+ .+++++...-+
T Consensus 203 lkDaNa~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ 282 (514)
T KOG2055|consen 203 LKDANAAHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYL 282 (514)
T ss_pred ecccccCCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEE
Confidence 34444444444445555554 4489999999999999987 344455556789999999996 89999999999
Q ss_pred EEEecCCCcceeEEEecccC-CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEe
Q 001349 836 KVWTGRGSILHLIQQIREHT-KAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFI 914 (1094)
Q Consensus 836 ~vWd~~t~~~~~~~~l~~H~-~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fs 914 (1094)
+.||+.+.+...+....++. ..+....+++++++|+..|..|.|.+-...+++ .+......+.|..+. |+
T Consensus 283 ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~e--li~s~KieG~v~~~~-------fs 353 (514)
T KOG2055|consen 283 YSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKE--LITSFKIEGVVSDFT-------FS 353 (514)
T ss_pred EEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhh--hhheeeeccEEeeEE-------Ee
Confidence 99999998777777777776 356778899999999999999999999998875 333344466677766 99
Q ss_pred eCCCeEEEEEeCCeEEEEcCCCC-----------c----eEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecC
Q 001349 915 PQGAGIKVHLRNGKTKLLNSSKY-----------P----KCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLG 979 (1094)
Q Consensus 915 pdg~~l~~~~~~g~i~l~~~~~~-----------v----~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~ 979 (1094)
.||+.+.+.+.+|.+.+|+.... + .|++.++..+++|+..|.|.|||..+-..-..-.+...+..
T Consensus 354 Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dN 433 (514)
T KOG2055|consen 354 SDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDN 433 (514)
T ss_pred cCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhh
Confidence 99999999999999999986432 2 22223456799999999999999654322111111134444
Q ss_pred CCCCeEEEEEeCCccEEEEEECC-CCEEEEEECCCCeEEEEecC----CCCEEEEEEeCC--EEEEEEcCCeEEEEECC
Q 001349 980 KANPVHALQVHNGLVYTASTSLD-GAAVKMWSTSNYNMVGSLPT----LSEVRAMVVSSE--LVYLGCKGGTVEIWDQK 1051 (1094)
Q Consensus 980 h~~~V~sl~fs~~~~~las~s~D-g~~I~iwd~~~~~~~~~~~~----~~~v~~l~~spd--~l~sgs~dg~I~vwd~~ 1051 (1094)
-...|+++.|+++..+++.+|.. ...+++-.+.+......++. -+.|+|++|||. +++.|..+|.|.+|.+.
T Consensus 434 Ltt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 434 LTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 55789999999998887776642 13899998887776666662 366999999997 89999999999999864
No 158
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.70 E-value=1.3e-16 Score=167.14 Aligned_cols=249 Identities=14% Similarity=0.193 Sum_probs=179.1
Q ss_pred cEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcceeEEEe---cccCCC
Q 001349 786 VKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQI---REHTKA 857 (1094)
Q Consensus 786 ~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~~~~l---~~H~~~ 857 (1094)
-++|.||.-|.|+|.|+. ++...+.+|.+.|+.+.|.|+ +++++|.|.+|++||+++. .++..+ .+|.+.
T Consensus 106 p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~--~Cv~VfGG~egHrde 183 (385)
T KOG1034|consen 106 PFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD--VCVAVFGGVEGHRDE 183 (385)
T ss_pred eeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC--eEEEEecccccccCc
Confidence 378888999999999987 567788999999999999984 9999999999999999999 777766 579999
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEE----c
Q 001349 858 VTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLL----N 933 (1094)
Q Consensus 858 V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~----~ 933 (1094)
|.+++|+++|.+|+|+|.|.++++|++...+... .+... ..|+|++...-.-...-....| .
T Consensus 184 VLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~--------~lE~s------~~~~~~~t~~pfpt~~~~fp~fst~di 249 (385)
T KOG1034|consen 184 VLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKN--------KLELS------ITYSPNKTTRPFPTPKTHFPDFSTTDI 249 (385)
T ss_pred EEEEEEcCCCCeeeccCCcceEEEEecChhHHhh--------hhhhh------cccCCCCccCcCCcccccccccccccc
Confidence 9999999999999999999999999998643110 00000 0144444321110000111111 2
Q ss_pred CCCCceEEEEeCCEEEEEEcCCeEEEEECC-CCceeEEe-cc------ceeecCCCCCeEEEEE--eCCccEEEEEECCC
Q 001349 934 SSKYPKCLALVQGKVYCGCQDGAIQEIDLA-TGTFATIQ-TG------HRKLLGKANPVHALQV--HNGLVYTASTSLDG 1003 (1094)
Q Consensus 934 ~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~-~~~~~~~~-~~------~~~~~~h~~~V~sl~f--s~~~~~las~s~Dg 1003 (1094)
|..+|.|+.|..+.+++-+-++.|..|... -++.+... ++ ...+.-....|.-+.| ++-...++.+...|
T Consensus 250 HrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g 329 (385)
T KOG1034|consen 250 HRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSG 329 (385)
T ss_pred ccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCC
Confidence 567899999999999999999999999872 22211100 00 0112222334555555 57788888888776
Q ss_pred CEEEEEECCCCeEE--EEec---CCCCEEEEEEeCC--EEEEEEcCCeEEEEECC
Q 001349 1004 AAVKMWSTSNYNMV--GSLP---TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQK 1051 (1094)
Q Consensus 1004 ~~I~iwd~~~~~~~--~~~~---~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~ 1051 (1094)
.|.+||++...+. .++. ....|...+|+.| .++..++|++|.-||.-
T Consensus 330 -~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 330 -KVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred -cEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 9999999976653 2333 3567899999988 78889999999999864
No 159
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=7.4e-16 Score=162.44 Aligned_cols=269 Identities=16% Similarity=0.206 Sum_probs=191.8
Q ss_pred cEEEEeeCCCCeEEEeCCc--ceeecccCCCcEEEEEEeC----CEEEEEECCCeEEEEecCCCcceeEEEecccC-CCe
Q 001349 786 VKVLSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFR----DKIFSGHSDGTIKVWTGRGSILHLIQQIREHT-KAV 858 (1094)
Q Consensus 786 ~~l~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~fsp----d~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~-~~V 858 (1094)
..++++-..|.|++||..+ ....+.+|...+..+.|.. +.+.+++.||+|++||+++........+..|. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 6789999999999999985 6778889999999999975 49999999999999999987555666666776 456
Q ss_pred EEEEEecCCCEEEEEeC----CCcEEEEECCCCce-EEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEc
Q 001349 859 TGLAILQSGEMLYSGSL----DKTARVWSIGNEEI-HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN 933 (1094)
Q Consensus 859 ~sv~fspdg~~LaSgs~----DgtI~vWdi~~~~~-~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~ 933 (1094)
.+++.+-.++.+++|+. |-.|.+||++..+. .......|.+.|+++. |.|..
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lr-------FHP~~---------------- 177 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLR-------FHPSD---------------- 177 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEE-------ecCCC----------------
Confidence 77777767888888754 67899999998642 1122223455555555 54443
Q ss_pred CCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCc-cEEEEEECCCCEEEEEECC
Q 001349 934 SSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGL-VYTASTSLDGAAVKMWSTS 1012 (1094)
Q Consensus 934 ~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~-~~las~s~Dg~~I~iwd~~ 1012 (1094)
|+.+++|+.||-|.+||+.....-. .-.....|...|..+.|+.++ ..+.+-+..+ +..+|++.
T Consensus 178 -----------pnlLlSGSvDGLvnlfD~~~d~EeD---aL~~viN~~sSI~~igw~~~~ykrI~clTH~E-tf~~~ele 242 (376)
T KOG1188|consen 178 -----------PNLLLSGSVDGLVNLFDTKKDNEED---ALLHVINHGSSIHLIGWLSKKYKRIMCLTHME-TFAIYELE 242 (376)
T ss_pred -----------CCeEEeecccceEEeeecCCCcchh---hHHHhhcccceeeeeeeecCCcceEEEEEccC-ceeEEEcc
Confidence 3569999999999999998653221 112345677889999998655 3345555565 89999999
Q ss_pred CCeEEEEecCC-------------CCEEEEEEeCC---EEEE-EEcCCeEEEEECC------CCcEEEEecccCCcceEE
Q 001349 1013 NYNMVGSLPTL-------------SEVRAMVVSSE---LVYL-GCKGGTVEIWDQK------RQIRIETLQTGTSGKVQC 1069 (1094)
Q Consensus 1013 ~~~~~~~~~~~-------------~~v~~l~~spd---~l~s-gs~dg~I~vwd~~------t~~~~~~l~~~h~~~I~~ 1069 (1094)
.+.+...+... ..+... .+|. ..+. |+.-|...++-+. ..+.+..+..+|...|.+
T Consensus 243 ~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~-~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~ 321 (376)
T KOG1188|consen 243 DGSEETWLENPDVSADDLRKEDNCDYVINE-HSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRD 321 (376)
T ss_pred CCChhhcccCccchhhhHHhhhhhhheeec-ccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHH
Confidence 88866555422 111111 1222 3333 4435555555332 345666776678889999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1070 MALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1070 l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
+.|...+.++.|||.||.+.+|..
T Consensus 322 i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 322 ILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred HhhhcccceeeccCCCceEEEEec
Confidence 999999999999999999999973
No 160
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=2.7e-16 Score=175.40 Aligned_cols=258 Identities=17% Similarity=0.263 Sum_probs=183.2
Q ss_pred EEeCCcceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecC------CCcceeEEEecccCCCeEEEEEecCCCEE
Q 001349 799 FWNHRELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGR------GSILHLIQQIREHTKAVTGLAILQSGEML 870 (1094)
Q Consensus 799 vWd~~~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~------t~~~~~~~~l~~H~~~V~sv~fspdg~~L 870 (1094)
-|+++- ++..|.+.|+.+.|.+. .|++++.||++++|++. ....+++.+|.+|.++|.|+++.+++..+
T Consensus 283 ~w~ik~---tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ 359 (577)
T KOG0642|consen 283 KWNIKF---TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHC 359 (577)
T ss_pred ecceee---eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEE
Confidence 365542 66789999999999985 99999999999999993 23457899999999999999999999999
Q ss_pred EEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC--CEE
Q 001349 871 YSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ--GKV 948 (1094)
Q Consensus 871 aSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~--~~l 948 (1094)
++||-||+|+.|++.... .|+..+= .....-.+..|...++.++++. ++|
T Consensus 360 ysgg~Dg~I~~w~~p~n~-------------------------dp~ds~d---p~vl~~~l~Ghtdavw~l~~s~~~~~L 411 (577)
T KOG0642|consen 360 YSGGIDGTIRCWNLPPNQ-------------------------DPDDSYD---PSVLSGTLLGHTDAVWLLALSSTKDRL 411 (577)
T ss_pred EeeccCceeeeeccCCCC-------------------------CcccccC---cchhccceeccccceeeeeecccccce
Confidence 999999999999886421 1111000 0000112334566677777764 569
Q ss_pred EEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecC------
Q 001349 949 YCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT------ 1022 (1094)
Q Consensus 949 ~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~------ 1022 (1094)
++++.||+++.|+...... .++... ..| +.-.++.+-.........+..-+.-.+++.........+..
T Consensus 412 lscs~DgTvr~w~~~~~~~-~~f~~~---~e~-g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~ 486 (577)
T KOG0642|consen 412 LSCSSDGTVRLWEPTEESP-CTFGEP---KEH-GYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGP 486 (577)
T ss_pred eeecCCceEEeeccCCcCc-cccCCc---ccc-CCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcc
Confidence 9999999999999887665 222211 112 23345665433322222211111233344444444444431
Q ss_pred --CCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1023 --LSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1023 --~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
...+..+.++|. +.+++..|+.|+++|..++.+++.. ..|...++++++.|+|.+|++|+.||.|++|.+
T Consensus 487 ~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~-~a~~~svtslai~~ng~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 487 RRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSM-VAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred cccCccceEEecCCCCeeEecccCCceecccccccccchhe-eeccceecceeecCCCceEEeecCCceeehhhc
Confidence 134566777776 8899999999999999999999988 589999999999999999999999999999986
No 161
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=2.1e-15 Score=156.94 Aligned_cols=237 Identities=11% Similarity=0.188 Sum_probs=164.7
Q ss_pred EEEEEEeC--CEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEE
Q 001349 816 VLSIACFR--DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQ 893 (1094)
Q Consensus 816 V~~l~fsp--d~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~ 893 (1094)
-.|+.|++ ++||+|+.||.|.|||+.|. ..-+.+.+|..+|++++||+||+.|+|+|.|..|++||+..|. +..
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~--~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs--~l~ 101 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF--RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS--PLK 101 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEcccc--chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC--cee
Confidence 68999998 49999999999999999998 5677889999999999999999999999999999999999985 455
Q ss_pred ecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEecc
Q 001349 894 VHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTG 973 (1094)
Q Consensus 894 ~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~ 973 (1094)
.....++|.... |.|.....++.. -.+..-.+.++..+.... ++.
T Consensus 102 rirf~spv~~~q-------~hp~k~n~~va~---------------------------~~~~sp~vi~~s~~~h~~-Lp~ 146 (405)
T KOG1273|consen 102 RIRFDSPVWGAQ-------WHPRKRNKCVAT---------------------------IMEESPVVIDFSDPKHSV-LPK 146 (405)
T ss_pred EEEccCccceee-------eccccCCeEEEE---------------------------EecCCcEEEEecCCceee-ccC
Confidence 555677888777 666544321111 111111111111111100 000
Q ss_pred ceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecC--CCCEEEEEEeCC--EEEEEEcCCeEEEEE
Q 001349 974 HRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT--LSEVRAMVVSSE--LVYLGCKGGTVEIWD 1049 (1094)
Q Consensus 974 ~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~--~~~v~~l~~spd--~l~sgs~dg~I~vwd 1049 (1094)
..-..-+....+..|++.|.++.+|...| .+.++|..+.+++..++- ...|..+.++.. ++++-+.|..||.|+
T Consensus 147 -d~d~dln~sas~~~fdr~g~yIitGtsKG-kllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye 224 (405)
T KOG1273|consen 147 -DDDGDLNSSASHGVFDRRGKYIITGTSKG-KLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYE 224 (405)
T ss_pred -CCccccccccccccccCCCCEEEEecCcc-eEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEe
Confidence 00000001122236789999999998887 999999999999998883 367888888765 899999999999999
Q ss_pred CCCC-------c--EEEEecc-cCCcceEEEEEcCCCCEEEEEeC-CCcEEEEeC
Q 001349 1050 QKRQ-------I--RIETLQT-GTSGKVQCMALDDNEEFLVIGTS-DGRIQAWGL 1093 (1094)
Q Consensus 1050 ~~t~-------~--~~~~l~~-~h~~~I~~l~~Spdg~~L~sgs~-DG~I~iWdl 1093 (1094)
+..- . +.+.++. -....-.+++||.||.|++.|+. ...++||.-
T Consensus 225 ~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~ 279 (405)
T KOG1273|consen 225 ISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEK 279 (405)
T ss_pred hhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEec
Confidence 7621 1 1112210 01224467889999999988774 456999963
No 162
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=5.6e-15 Score=156.99 Aligned_cols=289 Identities=12% Similarity=0.103 Sum_probs=205.5
Q ss_pred HHHHHHHHhhhccccccccccCcEEEEeeCCCCeEEEeCCc--------ceeec-ccCCCcEEEEEEeCC--EEEEEECC
Q 001349 764 HMKDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRE--------LVHVD-SSENGKVLSIACFRD--KIFSGHSD 832 (1094)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~--------~~~~~-~~h~~~V~~l~fspd--~LaSgs~D 832 (1094)
|.+.-++.|...++...|+-++.++++||.|..+++|++.+ .+.+. ..|...|.|++|.-. .+++|..+
T Consensus 47 ~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~ 126 (609)
T KOG4227|consen 47 FCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW 126 (609)
T ss_pred hhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence 33444566777778888888999999999999999999862 23333 345699999999863 99999999
Q ss_pred CeEEEEecCCCcceeEEEecccC---CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCc
Q 001349 833 GTIKVWTGRGSILHLIQQIREHT---KAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNS 909 (1094)
Q Consensus 833 g~I~vWd~~t~~~~~~~~l~~H~---~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~ 909 (1094)
|+|..-|+.+. +.+..+. |. +.|..+..+|..+.|++.+.+|.|.+||++.... ++.-
T Consensus 127 ~~VI~HDiEt~--qsi~V~~-~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~----------~~~~------ 187 (609)
T KOG4227|consen 127 GTVIKHDIETK--QSIYVAN-ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQN----------PISL------ 187 (609)
T ss_pred ceeEeeecccc--eeeeeec-ccCcccceeecccCCCCceEEEEecCceEEEEeccCCCC----------CCce------
Confidence 99999999998 5555543 44 4899999999999999999999999999987530 1110
Q ss_pred eEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEe---CCEEEEEEcCCeEEEEECCCCcee-EEeccceeecCCCCCeE
Q 001349 910 ILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALV---QGKVYCGCQDGAIQEIDLATGTFA-TIQTGHRKLLGKANPVH 985 (1094)
Q Consensus 910 ~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s---~~~l~sgs~Dg~I~iwDl~~~~~~-~~~~~~~~~~~h~~~V~ 985 (1094)
|.|.. ..+....+.|+ |..|++.+..+.+-+||++..... ..+.....+......-.
T Consensus 188 ---~~~AN----------------~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M 248 (609)
T KOG4227|consen 188 ---VLPAN----------------SGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWM 248 (609)
T ss_pred ---eeecC----------------CCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhh
Confidence 11100 01112233333 235888889999999999865432 11111112222222346
Q ss_pred EEEEeCCccEEEEEECCCCEEEEEECCCCe-EEEEecCC-------CCEEEEEEeCC-EEEEEEcCCeEEEEECCC----
Q 001349 986 ALQVHNGLVYTASTSLDGAAVKMWSTSNYN-MVGSLPTL-------SEVRAMVVSSE-LVYLGCKGGTVEIWDQKR---- 1052 (1094)
Q Consensus 986 sl~fs~~~~~las~s~Dg~~I~iwd~~~~~-~~~~~~~~-------~~v~~l~~spd-~l~sgs~dg~I~vwd~~t---- 1052 (1094)
++.|+|+|..+.+.-.. ..-.+||+.+.. ++..+.|. ..+.+++|-.| .+++|+.+-.|++|.+..
T Consensus 249 ~~~~~~~G~Q~msiRR~-~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds 327 (609)
T KOG4227|consen 249 GSLWSPSGNQFMSIRRG-KCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDS 327 (609)
T ss_pred heeeCCCCCeehhhhcc-CCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccc
Confidence 77899988887776443 466788887743 44455542 24667888888 699999999999998642
Q ss_pred ------C-------------cEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1053 ------Q-------------IRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1053 ------~-------------~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
| +.+..+ .||...++.+.|+|...+|++.+..+.++||.
T Consensus 328 ~G~~~IG~~~~~~~~~~~i~~~~~VL-rGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 328 YGFTQIGHDEEEMPSEIFIEKELTVL-RGHRSVPNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred cCccccCcchhhCchhheecceeEEE-ecccccccceeecCCcceEeccchhhheeccc
Confidence 1 123445 58999999999999999999999999999995
No 163
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=3.3e-16 Score=187.77 Aligned_cols=226 Identities=17% Similarity=0.236 Sum_probs=175.2
Q ss_pred cEEEEeeCCCCeEEEeCCc--------ceeecccCCCcEEEEEEeC---CEEEEEECCCeEEEEecCCCcceeEEEe--c
Q 001349 786 VKVLSNGHDSSADFWNHRE--------LVHVDSSENGKVLSIACFR---DKIFSGHSDGTIKVWTGRGSILHLIQQI--R 852 (1094)
Q Consensus 786 ~~l~s~s~dg~I~vWd~~~--------~~~~~~~h~~~V~~l~fsp---d~LaSgs~Dg~I~vWd~~t~~~~~~~~l--~ 852 (1094)
..|+.|..||.|.+||... .+.....|+|.|..+.|++ ++||+|+.||.|.|||+... ..-.++ .
T Consensus 81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~--~tP~~~~~~ 158 (1049)
T KOG0307|consen 81 GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKP--ETPFTPGSQ 158 (1049)
T ss_pred ceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCc--CCCCCCCCC
Confidence 3588999999999999863 3455678999999999998 39999999999999999875 222222 2
Q ss_pred ccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCceEEEEecccCc--cceeeeecCceEEEeeCCCeEEEEEeCCeE
Q 001349 853 EHTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKD--QIQNLAVSNSILCFIPQGAGIKVHLRNGKT 929 (1094)
Q Consensus 853 ~H~~~V~sv~fsp-dg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~--~V~~v~~~~~~~~fspdg~~l~~~~~~g~i 929 (1094)
.-.+.|.+++|+. ....|++++.+|++.|||++..+ ..+....+.. .+..+ .|+|++..
T Consensus 159 ~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~-pii~ls~~~~~~~~S~l-------~WhP~~aT---------- 220 (1049)
T KOG0307|consen 159 APPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKK-PIIKLSDTPGRMHCSVL-------AWHPDHAT---------- 220 (1049)
T ss_pred CCcccceEeccchhhhHHhhccCCCCCceeccccCCC-cccccccCCCccceeee-------eeCCCCce----------
Confidence 2457899999997 46789999999999999999853 2222222222 12222 36665543
Q ss_pred EEEcCCCCceEEEEeCCEEEEEEcCC---eEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCc-cEEEEEECCCCE
Q 001349 930 KLLNSSKYPKCLALVQGKVYCGCQDG---AIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGL-VYTASTSLDGAA 1005 (1094)
Q Consensus 930 ~l~~~~~~v~~l~~s~~~l~sgs~Dg---~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~-~~las~s~Dg~~ 1005 (1094)
++++++.|. .|.+||++.-.... +.+.+|...|.++.|++.+ .++++++.|+ .
T Consensus 221 -----------------ql~~As~dd~~PviqlWDlR~assP~-----k~~~~H~~GilslsWc~~D~~lllSsgkD~-~ 277 (1049)
T KOG0307|consen 221 -----------------QLLVASGDDSAPVIQLWDLRFASSPL-----KILEGHQRGILSLSWCPQDPRLLLSSGKDN-R 277 (1049)
T ss_pred -----------------eeeeecCCCCCceeEeecccccCCch-----hhhcccccceeeeccCCCCchhhhcccCCC-C
Confidence 466666554 69999998755432 5667999999999998654 8899999997 9
Q ss_pred EEEEECCCCeEEEEec-CCCCEEEEEEeCC---EEEEEEcCCeEEEEECCCCc
Q 001349 1006 VKMWSTSNYNMVGSLP-TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQI 1054 (1094)
Q Consensus 1006 I~iwd~~~~~~~~~~~-~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~~ 1054 (1094)
|.+|+..+++.+..+. .+.++..+.|+|. .+++++.||.|.||.+.+..
T Consensus 278 ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 278 IICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 9999999999999998 6788999999986 78999999999999987644
No 164
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.66 E-value=8.1e-15 Score=172.44 Aligned_cols=272 Identities=17% Similarity=0.187 Sum_probs=188.2
Q ss_pred CCeEEEeCCcce--eecccCCCcEEEEEEeC---CEEEEEECCCeEEEEecCCCcceeEE----EecccCCCeEEEEEec
Q 001349 795 SSADFWNHRELV--HVDSSENGKVLSIACFR---DKIFSGHSDGTIKVWTGRGSILHLIQ----QIREHTKAVTGLAILQ 865 (1094)
Q Consensus 795 g~I~vWd~~~~~--~~~~~h~~~V~~l~fsp---d~LaSgs~Dg~I~vWd~~t~~~~~~~----~l~~H~~~V~sv~fsp 865 (1094)
+.+.+|+++... .....-...|+|+.|+| ++++.|+++|.|.+||+..+...... ....|..+|+.+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 378899998431 22223467899999987 49999999999999999876432121 2246889999999977
Q ss_pred CC--CEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEE
Q 001349 866 SG--EMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLAL 943 (1094)
Q Consensus 866 dg--~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~ 943 (1094)
+. .-++++|.||.|..|+++.-.. ............ .+. -......+.+++|
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~-P~e~~~~~~~~~-------------~~~------------~~~~~~~~t~~~F 355 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSL-PVEGLLLESKKH-------------KGQ------------QSSKAVGATSLKF 355 (555)
T ss_pred cCCCCceEEEecCCcEeeeecccccc-chhhcccccccc-------------ccc------------ccccccceeeEee
Confidence 43 4599999999999998765321 000000000000 000 0011233556666
Q ss_pred e---CCEEEEEEcCCeEEEEECCCCcee--EEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECC-CCeEE
Q 001349 944 V---QGKVYCGCQDGAIQEIDLATGTFA--TIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTS-NYNMV 1017 (1094)
Q Consensus 944 s---~~~l~sgs~Dg~I~iwDl~~~~~~--~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~-~~~~~ 1017 (1094)
. +..+++|+.+|.|..-+-...+.. ..+.++..+..|.++|+++.++|=+..+...+.|. +++||... ...++
T Consensus 356 ~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW-~vriWs~~~~~~Pl 434 (555)
T KOG1587|consen 356 EPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDW-TVRIWSEDVIASPL 434 (555)
T ss_pred ccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccc-eeEeccccCCCCcc
Confidence 5 467999999999887443322211 23444456778899999999998655444444465 99999987 66666
Q ss_pred EEec-CCCCEEEEEEeCC---EEEEEEcCCeEEEEECCCC--cEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEE
Q 001349 1018 GSLP-TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQ--IRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAW 1091 (1094)
Q Consensus 1018 ~~~~-~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~--~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iW 1091 (1094)
..+. +...+++++|||. .++++..||.|.+||+... .++.+.+ -+....+.+.|+++|+.|++|+..|++++|
T Consensus 435 ~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~-~~~~~l~~~~~s~~g~~lavGd~~G~~~~~ 513 (555)
T KOG1587|consen 435 LSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQK-VCSPALTRVRWSPNGKLLAVGDANGTTHIL 513 (555)
T ss_pred hhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccc-ccccccceeecCCCCcEEEEecCCCcEEEE
Confidence 6665 5666999999997 7899999999999998643 3455553 235577888999999999999999999999
Q ss_pred eCC
Q 001349 1092 GLS 1094 (1094)
Q Consensus 1092 dls 1094 (1094)
++.
T Consensus 514 ~l~ 516 (555)
T KOG1587|consen 514 KLS 516 (555)
T ss_pred EcC
Confidence 983
No 165
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.66 E-value=4.8e-13 Score=155.45 Aligned_cols=296 Identities=26% Similarity=0.430 Sum_probs=220.6
Q ss_pred cccCc-EEEEeeC-CCCeEEEeCC---cceeecccCCCcEEEEEEeCC--EEEEEEC-CCeEEEEecCCCcceeEEEecc
Q 001349 782 AFEMV-KVLSNGH-DSSADFWNHR---ELVHVDSSENGKVLSIACFRD--KIFSGHS-DGTIKVWTGRGSILHLIQQIRE 853 (1094)
Q Consensus 782 ~~d~~-~l~s~s~-dg~I~vWd~~---~~~~~~~~h~~~V~~l~fspd--~LaSgs~-Dg~I~vWd~~t~~~~~~~~l~~ 853 (1094)
..++. .++..+. |+.+.+|+.. ........|...|.+++|+|+ .+++++. |+.+++|+..++ ..+..+.+
T Consensus 119 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 196 (466)
T COG2319 119 SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG--KPLSTLAG 196 (466)
T ss_pred CCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC--ceEEeecc
Confidence 34454 4454444 9999999997 456778899999999999996 6888875 999999999986 67888888
Q ss_pred cCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEE
Q 001349 854 HTKAVTGLAILQSGE-MLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLL 932 (1094)
Q Consensus 854 H~~~V~sv~fspdg~-~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~ 932 (1094)
|...|.+++|+|++. .+++++.|++|++||...+.........+.... .. .|++++..++....++.+++|
T Consensus 197 ~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~d~~~~~~ 268 (466)
T COG2319 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VS-------SFSPDGSLLASGSSDGTIRLW 268 (466)
T ss_pred CCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eE-------eECCCCCEEEEecCCCcEEEe
Confidence 999999999999998 666669999999998886542221122222221 11 388999888888888888888
Q ss_pred cC-------------CCCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEE
Q 001349 933 NS-------------SKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTA 997 (1094)
Q Consensus 933 ~~-------------~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~la 997 (1094)
+. ...+.++.+.+ ..+++++.|+.+.+||..+........ ...|...+..+.|.+++..+.
T Consensus 269 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 344 (466)
T COG2319 269 DLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT----LKGHEGPVSSLSFSPDGSLLV 344 (466)
T ss_pred eecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee----ecccCCceEEEEECCCCCEEE
Confidence 64 34667777776 567778999999999998887663322 246777799999933323444
Q ss_pred EE-ECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcC
Q 001349 998 ST-SLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDD 1074 (1094)
Q Consensus 998 s~-s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Sp 1074 (1094)
.+ ..| +.+.+|+...............+..+.++++ ....+..++.+.+|+........... .+...+....+++
T Consensus 345 ~~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 422 (466)
T COG2319 345 SGGSDD-GTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLD-GHTSRVTSLDFSP 422 (466)
T ss_pred EeecCC-CcEEeeecCCCceeEEecCCceEEEEEECCCCCEEEEecCCCceEEEecccCeeeeecc-CCCCcEEEEEECC
Confidence 44 556 5899999988773333333333777777773 22236789999999999988877774 2226899999999
Q ss_pred CCCEEEEEeCCCcEEEEeC
Q 001349 1075 NEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1075 dg~~L~sgs~DG~I~iWdl 1093 (1094)
++..+++++.++++++|++
T Consensus 423 ~~~~~~~~~~~~~~~~~~~ 441 (466)
T COG2319 423 DGKSLASGSSDNTIRLWDL 441 (466)
T ss_pred CCcEEEEecCCCcEEEEec
Confidence 9999999999999999986
No 166
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.66 E-value=2.4e-15 Score=169.50 Aligned_cols=238 Identities=18% Similarity=0.224 Sum_probs=160.6
Q ss_pred cCcEEEEeeCCCCeEEEeCCc----ceeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCc------------
Q 001349 784 EMVKVLSNGHDSSADFWNHRE----LVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSI------------ 844 (1094)
Q Consensus 784 d~~~l~s~s~dg~I~vWd~~~----~~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~------------ 844 (1094)
-...|++++.|.++++||+.+ ....+.||.+.|.+++|.+. .|++|+.||.|.|||+.-..
T Consensus 111 ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~ 190 (720)
T KOG0321|consen 111 GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIY 190 (720)
T ss_pred CceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhh
Confidence 345899999999999999982 33458899999999999984 99999999999999986321
Q ss_pred -------------ceeEEEecccCCCeEE---EEEecCCCEEEEEeC-CCcEEEEECCCCceEEEEecccCccceeeeec
Q 001349 845 -------------LHLIQQIREHTKAVTG---LAILQSGEMLYSGSL-DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVS 907 (1094)
Q Consensus 845 -------------~~~~~~l~~H~~~V~s---v~fspdg~~LaSgs~-DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~ 907 (1094)
.+.+.....|.+.|.+ +.+..|...|||+|. |++|+|||++......... ...+..+.
T Consensus 191 ~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~e---p~~~~~~~-- 265 (720)
T KOG0321|consen 191 GRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQE---PRGSDKYP-- 265 (720)
T ss_pred ccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccC---CCcccCcc--
Confidence 0112223345555665 666679999999998 9999999999853111100 11111110
Q ss_pred CceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEe--CCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeE
Q 001349 908 NSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALV--QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVH 985 (1094)
Q Consensus 908 ~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s--~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~ 985 (1094)
...+ ..-.+.++..+ +.++++.|.|++|++||+.+-..... ..+.++...-.
T Consensus 266 -------t~sk---------------rs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~----~~~sg~~~~sf 319 (720)
T KOG0321|consen 266 -------THSK---------------RSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPV----AEFSGKLNSSF 319 (720)
T ss_pred -------Cccc---------------ceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCch----hhccCccccee
Confidence 0000 00112222222 35688888899999999987543211 22223322212
Q ss_pred EE--EEeCCccEEEEEECCCCEEEEEECCCCeEEEE-ec-CCCCEEEEEEeCC---EEEEEEcCCeEEEEECCCC
Q 001349 986 AL--QVHNGLVYTASTSLDGAAVKMWSTSNYNMVGS-LP-TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQ 1053 (1094)
Q Consensus 986 sl--~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~-~~-~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~ 1053 (1094)
.+ ..+|++.++++++.|+ ...+|.+.+.+.--. +. |...|++++|.|. -++++++|.+++||++..+
T Consensus 320 ~vks~lSpd~~~l~SgSsd~-~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 320 YVKSELSPDDCSLLSGSSDE-QAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred eeeeecCCCCceEeccCCCc-ceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 22 2369999999999997 999999987553322 22 6788999999886 5888899999999998654
No 167
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.65 E-value=4.5e-16 Score=179.15 Aligned_cols=270 Identities=17% Similarity=0.234 Sum_probs=197.9
Q ss_pred HHhhhccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcc
Q 001349 770 KGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSIL 845 (1094)
Q Consensus 770 ~~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~ 845 (1094)
.+|+..+-...+.-.|.++++|+.|..++||... .+.....||.+.|+.++.+.+ ++++++.|..|++|.+.++
T Consensus 187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~-- 264 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG-- 264 (1113)
T ss_pred HhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC--
Confidence 4555555556677789999999999999999977 567788999999999999876 8999999999999999999
Q ss_pred eeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEe
Q 001349 846 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLR 925 (1094)
Q Consensus 846 ~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~ 925 (1094)
.++..+.+|++.|++++|+|-. +.+.||++++||.+-. .....+ .+ ..+++.
T Consensus 265 ~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~---~~~y~p--rp------------~~~~~~------- 316 (1113)
T KOG0644|consen 265 APVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLE---PRIYVP--RP------------LKFTEK------- 316 (1113)
T ss_pred chHHHHhccccceeeeccCccc----cCCCCCceEecccccc---ccccCC--CC------------CCcccc-------
Confidence 7889999999999999999954 7889999999999821 111110 00 001111
Q ss_pred CCeEEEEcCCCCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCc-cEEEEEECC
Q 001349 926 NGKTKLLNSSKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGL-VYTASTSLD 1002 (1094)
Q Consensus 926 ~g~i~l~~~~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~-~~las~s~D 1002 (1094)
..+.++.+.. ..+.+|+.|+.-..|.+..-. .+...+.-+.++.+. .+.++.-.+
T Consensus 317 ----------~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~------------~~~~~lif~t~ssd~~~~~~~ar~~ 374 (1113)
T KOG0644|consen 317 ----------DLVDSILFENNGDRFLTGSRDGEARNHEFEQLA------------WRSNLLIFVTRSSDLSSIVVTARND 374 (1113)
T ss_pred ----------cceeeeeccccccccccccCCcccccchhhHhh------------hhccceEEEeccccccccceeeeee
Confidence 1112222221 247788888887777654221 122222223332222 233444444
Q ss_pred CCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC---EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCE
Q 001349 1003 GAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEF 1078 (1094)
Q Consensus 1003 g~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~ 1078 (1094)
..+.+|++.+|...+... |...+..+.++|- ...+++.||...|||+-.|.+++.+..+|. .+..-+||+||..
T Consensus 375 -~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~-kl~d~kFSqdgts 452 (1113)
T KOG0644|consen 375 -HRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHG-KLVDGKFSQDGTS 452 (1113)
T ss_pred -eEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccc-eeeccccCCCCce
Confidence 488999999998887776 6778888888875 677899999999999999998888866765 6777789999999
Q ss_pred EEEEeCCCcEEEEeC
Q 001349 1079 LVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1079 L~sgs~DG~I~iWdl 1093 (1094)
++....-|.++|...
T Consensus 453 ~~lsd~hgql~i~g~ 467 (1113)
T KOG0644|consen 453 IALSDDHGQLYILGT 467 (1113)
T ss_pred EecCCCCCceEEecc
Confidence 999888899988753
No 168
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=4.5e-15 Score=165.89 Aligned_cols=236 Identities=18% Similarity=0.234 Sum_probs=178.2
Q ss_pred eeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCc----eEEEeeCCCeEE
Q 001349 846 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNS----ILCFIPQGAGIK 921 (1094)
Q Consensus 846 ~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~----~~~fspdg~~l~ 921 (1094)
.+-..+.||++.|.+|...|.|.+|++|+.||+|+||.+.+| +|+......+.|.+++|++. .++.+-.+..++
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg--Rcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~i 468 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATG--RCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLI 468 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecc--eEEEEEeecceeEEEEecCCCCceeEEEEecCceEE
Confidence 355667899999999999999999999999999999999998 78888888889999996553 111111111111
Q ss_pred EEE-----------------------eCCeEEEE----------------cCCCCceEEEEeC--CEEEEEEcC---CeE
Q 001349 922 VHL-----------------------RNGKTKLL----------------NSSKYPKCLALVQ--GKVYCGCQD---GAI 957 (1094)
Q Consensus 922 ~~~-----------------------~~g~i~l~----------------~~~~~v~~l~~s~--~~l~sgs~D---g~I 957 (1094)
+.. .++.+..| .+.+.|+.+.|+. +++++.+.+ ..|
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV 548 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence 100 00111223 2345677777773 567766554 468
Q ss_pred EEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeC--C
Q 001349 958 QEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSS--E 1034 (1094)
Q Consensus 958 ~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~sp--d 1034 (1094)
.|+++...... ..|.-..+.|..+.|+|...+++.++.. .|+|||+.....+..+. +...|.+++++| |
T Consensus 549 liHQLSK~~sQ------~PF~kskG~vq~v~FHPs~p~lfVaTq~--~vRiYdL~kqelvKkL~tg~kwiS~msihp~GD 620 (733)
T KOG0650|consen 549 LIHQLSKRKSQ------SPFRKSKGLVQRVKFHPSKPYLFVATQR--SVRIYDLSKQELVKKLLTGSKWISSMSIHPNGD 620 (733)
T ss_pred EEEeccccccc------CchhhcCCceeEEEecCCCceEEEEecc--ceEEEehhHHHHHHHHhcCCeeeeeeeecCCCC
Confidence 88888776654 2333345679999999998888777644 79999999877777665 678899999999 5
Q ss_pred EEEEEEcCCeEEEEECCCC-cEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1035 LVYLGCKGGTVEIWDQKRQ-IRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1035 ~l~sgs~dg~I~vwd~~t~-~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
.+++|+.|+.+..||+.-+ ++.+++ ..|...+++++|++.-.++++|+.||++.||.
T Consensus 621 nli~gs~d~k~~WfDldlsskPyk~l-r~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 621 NLILGSYDKKMCWFDLDLSSKPYKTL-RLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred eEEEecCCCeeEEEEcccCcchhHHh-hhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 8999999999999999865 455566 57999999999999999999999999999874
No 169
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=8.9e-14 Score=140.16 Aligned_cols=269 Identities=12% Similarity=0.193 Sum_probs=191.9
Q ss_pred cccccccCcEEEEeeCCCCeEEEeCC------------cceeecccCCCcEEEEEEeCCEEEEEECCCeEEEEecCCCc-
Q 001349 778 YSPLAFEMVKVLSNGHDSSADFWNHR------------ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSI- 844 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg~I~vWd~~------------~~~~~~~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~- 844 (1094)
..++++.+.+++.|..+|.|-+..++ ..+...++|.++|+.++|..++|++|+. |.|+-|......
T Consensus 15 ~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E~~e 93 (325)
T KOG0649|consen 15 AQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNEEEE 93 (325)
T ss_pred HHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccC-ceEEEeeehhhhh
Confidence 35577788899999999999999875 1234457899999999999888888876 999999765321
Q ss_pred ---ceeEEEe--cccC-----CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEe
Q 001349 845 ---LHLIQQI--REHT-----KAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFI 914 (1094)
Q Consensus 845 ---~~~~~~l--~~H~-----~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fs 914 (1094)
.+.+... .-|. ..|+++-..|..+-++.++.|+.++-||+++|+.+.. ...|.+-+.++.
T Consensus 94 s~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~-~rGHtDYvH~vv--------- 163 (325)
T KOG0649|consen 94 SLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQRE-YRGHTDYVHSVV--------- 163 (325)
T ss_pred hccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEE-EcCCcceeeeee---------
Confidence 1112111 1233 3588999999877778888999999999999963322 223344444443
Q ss_pred eCCCeEEEEEeCCeEEEEcCCCCceEEEE--eCCEEEEEEcCCeEEEEECCCCceeEEeccc---eeecCC-CCCeEEEE
Q 001349 915 PQGAGIKVHLRNGKTKLLNSSKYPKCLAL--VQGKVYCGCQDGAIQEIDLATGTFATIQTGH---RKLLGK-ANPVHALQ 988 (1094)
Q Consensus 915 pdg~~l~~~~~~g~i~l~~~~~~v~~l~~--s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~---~~~~~h-~~~V~sl~ 988 (1094)
. ..+.+++|+.||++++||.++++.+...... ..+..| ...|.+++
T Consensus 164 ----------------------------~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala 215 (325)
T KOG0649|consen 164 ----------------------------GRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA 215 (325)
T ss_pred ----------------------------ecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe
Confidence 2 1346999999999999999999988654332 223333 24577777
Q ss_pred EeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCCEEEEEEcCCeEEEEECCCCcEEEEecccCCcceE
Q 001349 989 VHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQ 1068 (1094)
Q Consensus 989 fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~ 1068 (1094)
.+.+ ++++|+ |..+.+|+++..+++..|+-...+..+.|..|.+++++..+.|.-|.+. |..-...+.+|. ..+
T Consensus 216 ~~ed--WlvCGg--Gp~lslwhLrsse~t~vfpipa~v~~v~F~~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~-~c~ 289 (325)
T KOG0649|consen 216 VNED--WLVCGG--GPKLSLWHLRSSESTCVFPIPARVHLVDFVDDCVLIGGEGNHVQSYTLN-GVLQANIPVEST-ACY 289 (325)
T ss_pred ccCc--eEEecC--CCceeEEeccCCCceEEEecccceeEeeeecceEEEeccccceeeeeec-cEEEEeccCCcc-cee
Confidence 6555 566664 4589999999999999999999999999999999999999999999875 333333433332 455
Q ss_pred EEEEcCC-CCEEEEEeCCCcEEEE
Q 001349 1069 CMALDDN-EEFLVIGTSDGRIQAW 1091 (1094)
Q Consensus 1069 ~l~~Spd-g~~L~sgs~DG~I~iW 1091 (1094)
+..|+.. -++|-.++..+++.|+
T Consensus 290 s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 290 SASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred eecccCCceEEEEecccceeeeee
Confidence 5555432 3566667777777765
No 170
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=1.2e-15 Score=170.25 Aligned_cols=250 Identities=18% Similarity=0.242 Sum_probs=177.7
Q ss_pred hhhccccccccccCcEEEEeeCCCCeEEEeCC----------cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEe
Q 001349 772 LRELRKYSPLAFEMVKVLSNGHDSSADFWNHR----------ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWT 839 (1094)
Q Consensus 772 ~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~----------~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd 839 (1094)
+-..++..++.+.-..|++++.||++++|++. ..+.++.+|.++|.|+++.++ .+++|+-||+|+.|+
T Consensus 293 ~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~ 372 (577)
T KOG0642|consen 293 HDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWN 372 (577)
T ss_pred chhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeec
Confidence 33455566677777799999999999999982 467788999999999999986 999999999999996
Q ss_pred cCCC--------cceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceE
Q 001349 840 GRGS--------ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSIL 911 (1094)
Q Consensus 840 ~~t~--------~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~ 911 (1094)
+... .......+.||++.||.+++|+....|+++|.|||++.|+...... +........
T Consensus 373 ~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~------------ 439 (577)
T KOG0642|consen 373 LPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEH------------ 439 (577)
T ss_pred cCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCcccc------------
Confidence 5411 0134567889999999999999999999999999999999877543 111111000
Q ss_pred EEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCE---EEEEEcCCeEEEEECCCCceeEEeccce-eecCCCCCeEEE
Q 001349 912 CFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGK---VYCGCQDGAIQEIDLATGTFATIQTGHR-KLLGKANPVHAL 987 (1094)
Q Consensus 912 ~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~---l~sgs~Dg~I~iwDl~~~~~~~~~~~~~-~~~~h~~~V~sl 987 (1094)
+...++.+.... .++...-+.-.++|...+....++.... .-......+.-+
T Consensus 440 ------------------------g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~v 495 (577)
T KOG0642|consen 440 ------------------------GYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKV 495 (577)
T ss_pred ------------------------CCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceE
Confidence 111112221111 1122222222333444443333222110 001112457778
Q ss_pred EEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEe
Q 001349 988 QVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETL 1059 (1094)
Q Consensus 988 ~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l 1059 (1094)
.++|+..+..++..|. .|+++|..++.++.... |...++++++.|+ ++++|+.||.+++|......++...
T Consensus 496 Vs~~~~~~~~~~hed~-~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es 569 (577)
T KOG0642|consen 496 VSHPTADITFTAHEDR-SIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLES 569 (577)
T ss_pred EecCCCCeeEecccCC-ceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecc
Confidence 8899998888888775 99999999999988776 8899999999999 8999999999999999887776665
No 171
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.63 E-value=1.7e-14 Score=162.24 Aligned_cols=257 Identities=18% Similarity=0.263 Sum_probs=190.3
Q ss_pred cEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEE
Q 001349 815 KVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCV 892 (1094)
Q Consensus 815 ~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~ 892 (1094)
.|..++|-|| .|+.+. +..+.+||...| ..+.++++|.+.|.+++|+.||+.++||+.|+.|.+|+-.- .-+
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG--~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl---EG~ 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDG--TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL---EGI 87 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCc--ccccccccccceEEEEEEccCCceeccCCCceeEEEecccc---cce
Confidence 7899999997 333332 357999999999 78999999999999999999999999999999999998754 344
Q ss_pred EecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEc----------CCCCceEEEEeC-C-EEEEEEcCCeEEEE
Q 001349 893 QVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN----------SSKYPKCLALVQ-G-KVYCGCQDGAIQEI 960 (1094)
Q Consensus 893 ~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~----------~~~~v~~l~~s~-~-~l~sgs~Dg~I~iw 960 (1094)
....|.+.|.++. |.|-...+++.+.+. .-+|. ....+.+.+|.+ | .++.|-.||+|.+-
T Consensus 88 LkYSH~D~IQCMs-------FNP~~h~LasCsLsd-FglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiR 159 (1081)
T KOG1538|consen 88 LKYSHNDAIQCMS-------FNPITHQLASCSLSD-FGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIR 159 (1081)
T ss_pred eeeccCCeeeEee-------cCchHHHhhhcchhh-ccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEee
Confidence 5567788899988 777776666544331 22343 234567777864 4 48899999999998
Q ss_pred ECCCCceeEEeccceeecCCCCCeEEEEEeCCcc-----EEEEEECCCCEEEEEECCCCeEEE-EecCCCCEEEEEEeCC
Q 001349 961 DLATGTFATIQTGHRKLLGKANPVHALQVHNGLV-----YTASTSLDGAAVKMWSTSNYNMVG-SLPTLSEVRAMVVSSE 1034 (1094)
Q Consensus 961 Dl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~-----~las~s~Dg~~I~iwd~~~~~~~~-~~~~~~~v~~l~~spd 1034 (1094)
+-.......+ .+..|...+|.+++|+|... .++..... .++..|.+. |+.+. .-.-+....++.+.++
T Consensus 160 Nk~gEek~~I----~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~-qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~N 233 (1081)
T KOG1538|consen 160 NKNGEEKVKI----ERPGGSNSPIWSICWNPSSGEGRNDILAVADWG-QTLSFYQLS-GKQIGKDRALNFDPCCISYFTN 233 (1081)
T ss_pred cCCCCcceEE----eCCCCCCCCceEEEecCCCCCCccceEEEEecc-ceeEEEEec-ceeecccccCCCCchhheeccC
Confidence 7543333322 23346778999999987532 33444443 366666653 44443 2223555678888777
Q ss_pred --EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1035 --LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1035 --~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
++..|+.|+.+.+|-. .|-.+.++ .....+|+.++..|++++++.|+.||+|-.|++
T Consensus 234 GEy~LiGGsdk~L~~fTR-~GvrLGTv-g~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 234 GEYILLGGSDKQLSLFTR-DGVRLGTV-GEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred CcEEEEccCCCceEEEee-cCeEEeec-cccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 8999999999999974 46667777 345669999999999999999999999988875
No 172
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=1.8e-13 Score=160.73 Aligned_cols=294 Identities=14% Similarity=0.202 Sum_probs=207.3
Q ss_pred EeeCCCCeEEEeCCcce------eecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCC--CcceeEEEecccCCCeE
Q 001349 790 SNGHDSSADFWNHRELV------HVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRG--SILHLIQQIREHTKAVT 859 (1094)
Q Consensus 790 s~s~dg~I~vWd~~~~~------~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t--~~~~~~~~l~~H~~~V~ 859 (1094)
..-.+..+.+|+..... .....|.-.++|.++||+ ++++|..||.|.+|.--. +.....+.+.-|...|+
T Consensus 176 ~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~ 255 (792)
T KOG1963|consen 176 GIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVN 255 (792)
T ss_pred EEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccc
Confidence 33445567788776311 222347777999999996 999999999999995433 32244566778999999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCC----
Q 001349 860 GLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS---- 935 (1094)
Q Consensus 860 sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~---- 935 (1094)
+++|++||.+|+|||..|.+-+|.+.+++.+ ......++|..+. ++||+...++...|..+.+....
T Consensus 256 ~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kq--fLPRLgs~I~~i~-------vS~ds~~~sl~~~DNqI~li~~~dl~~ 326 (792)
T KOG1963|consen 256 SLSFSSDGAYLLSGGREGVLVLWQLETGKKQ--FLPRLGSPILHIV-------VSPDSDLYSLVLEDNQIHLIKASDLEI 326 (792)
T ss_pred eeEEecCCceEeecccceEEEEEeecCCCcc--cccccCCeeEEEE-------EcCCCCeEEEEecCceEEEEeccchhh
Confidence 9999999999999999999999999998633 3334577888887 99999999999999888877631
Q ss_pred -------------------CCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEecccee--ec---CCCCCeEEEEE
Q 001349 936 -------------------KYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRK--LL---GKANPVHALQV 989 (1094)
Q Consensus 936 -------------------~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~--~~---~h~~~V~sl~f 989 (1094)
+..+.+.+++ +.++..+..|+|++||+-+.+.+..+..... .. .+...++.++.
T Consensus 327 k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~ 406 (792)
T KOG1963|consen 327 KSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVAR 406 (792)
T ss_pred hhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehh
Confidence 1234455555 5688888999999999998876644321110 01 12235677777
Q ss_pred eCCccEEEEEEC--------CC-CEEEEEECCCCe----EEEEec--CCCCEEEEEEeCC----EEEEEEcCCeEEEEEC
Q 001349 990 HNGLVYTASTSL--------DG-AAVKMWSTSNYN----MVGSLP--TLSEVRAMVVSSE----LVYLGCKGGTVEIWDQ 1050 (1094)
Q Consensus 990 s~~~~~las~s~--------Dg-~~I~iwd~~~~~----~~~~~~--~~~~v~~l~~spd----~l~sgs~dg~I~vwd~ 1050 (1094)
+..+.++++.-. || ..+++|-..... +...+. |...+...++.+- ..++++.||.++||-.
T Consensus 407 ~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~ 486 (792)
T KOG1963|consen 407 SRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVF 486 (792)
T ss_pred hccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEE
Confidence 777888888632 11 267889765433 333333 5555555555432 7899999999999987
Q ss_pred CCCc---------EEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1051 KRQI---------RIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1051 ~t~~---------~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
...+ ....+..-|..+++..+|+.||. +++.+.|++|.+||.
T Consensus 487 ~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGs-lla~s~~~~Itiwd~ 537 (792)
T KOG1963|consen 487 TDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGS-LLAVSFDDTITIWDY 537 (792)
T ss_pred ecccccCcCccceEEeeeeccccCcccchhhcCCCc-EEEEecCCEEEEecC
Confidence 3211 12222123778999999999996 555667889999985
No 173
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=5.3e-14 Score=141.80 Aligned_cols=235 Identities=20% Similarity=0.287 Sum_probs=172.1
Q ss_pred cEEEEEEeCC--EEEEEECCCeEEEEecCCC--------cceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q 001349 815 KVLSIACFRD--KIFSGHSDGTIKVWTGRGS--------ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSI 884 (1094)
Q Consensus 815 ~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~--------~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi 884 (1094)
.|.+-+|+|. +|+.|..+|+|.+..++.- ....+...++|.++|+.++|+ ..+|++|++ |.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeee
Confidence 3455567774 9999999999999987521 124566678999999999998 356777665 99999988
Q ss_pred CCCce--EEEEecccCcc--ceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC--CEEEEEEcCCeEE
Q 001349 885 GNEEI--HCVQVHDIKDQ--IQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ--GKVYCGCQDGAIQ 958 (1094)
Q Consensus 885 ~~~~~--~~~~~~~~~~~--V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~--~~l~sgs~Dg~I~ 958 (1094)
+.... .+........| +..+ .-..|+++-..| +.++.++.|+.++
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~-----------------------------evPeINam~ldP~enSi~~AgGD~~~y 139 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAV-----------------------------EVPEINAMWLDPSENSILFAGGDGVIY 139 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcc-----------------------------cCCccceeEeccCCCcEEEecCCeEEE
Confidence 75321 11111100000 0000 012344555443 5678888999999
Q ss_pred EEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec---C--------CCCEE
Q 001349 959 EIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP---T--------LSEVR 1027 (1094)
Q Consensus 959 iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~---~--------~~~v~ 1027 (1094)
.||+++|+.. +.+.||++.|+++.--.....+.+|+.|| ++|+||.++++++..+. + +.+|-
T Consensus 140 ~~dlE~G~i~------r~~rGHtDYvH~vv~R~~~~qilsG~EDG-tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wig 212 (325)
T KOG0649|consen 140 QVDLEDGRIQ------REYRGHTDYVHSVVGRNANGQILSGAEDG-TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIG 212 (325)
T ss_pred EEEecCCEEE------EEEcCCcceeeeeeecccCcceeecCCCc-cEEEEeccccceeEEeccccChhhcCcccCceeE
Confidence 9999999987 77889999999999865556678899997 99999999999988775 1 35688
Q ss_pred EEEEeCCEEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1028 AMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1028 ~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
+++.+.|++++|+.- .+.+|++++.++...|. -.+++..+.|. .+.+++++..+.|.-|.+
T Consensus 213 ala~~edWlvCGgGp-~lslwhLrsse~t~vfp--ipa~v~~v~F~--~d~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 213 ALAVNEDWLVCGGGP-KLSLWHLRSSESTCVFP--IPARVHLVDFV--DDCVLIGGEGNHVQSYTL 273 (325)
T ss_pred EEeccCceEEecCCC-ceeEEeccCCCceEEEe--cccceeEeeee--cceEEEeccccceeeeee
Confidence 999999999988754 68999999999888884 45678888885 446777887777777765
No 174
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.62 E-value=7.2e-13 Score=153.96 Aligned_cols=277 Identities=27% Similarity=0.467 Sum_probs=204.7
Q ss_pred hhccccccccccCcEEEEeeCCCCeEEEeCCc---ceeecccCC-CcEEEEEE-eCC---EEEEEEC-CCeEEEEecCC-
Q 001349 773 RELRKYSPLAFEMVKVLSNGHDSSADFWNHRE---LVHVDSSEN-GKVLSIAC-FRD---KIFSGHS-DGTIKVWTGRG- 842 (1094)
Q Consensus 773 ~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~---~~~~~~~h~-~~V~~l~f-spd---~LaSgs~-Dg~I~vWd~~t- 842 (1094)
........+...+..++.++.|+.+.+|+... ....+.++. ..+..+.+ +++ .++..+. |+.+.+||..+
T Consensus 65 ~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 144 (466)
T COG2319 65 EDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTP 144 (466)
T ss_pred cceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCC
Confidence 33444566667788899999999999999873 344455534 37777777 553 3444344 99999999998
Q ss_pred CcceeEEEecccCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEE
Q 001349 843 SILHLIQQIREHTKAVTGLAILQSGEMLYSGSL-DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIK 921 (1094)
Q Consensus 843 ~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~-DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~ 921 (1094)
. .....+..|...|..+.|+|++..+++++. |+.+++|++..+.. ......+...+..+. |+|++..
T Consensus 145 ~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~-------~~~~~~~-- 212 (466)
T COG2319 145 G--KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP-LSTLAGHTDPVSSLA-------FSPDGGL-- 212 (466)
T ss_pred C--eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCce-EEeeccCCCceEEEE-------EcCCcce--
Confidence 5 577888899999999999999999999986 99999999997431 112222456666666 5555541
Q ss_pred EEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEEC
Q 001349 922 VHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSL 1001 (1094)
Q Consensus 922 ~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~ 1001 (1094)
.+++++.|+.|++||...+..... .+.+|.... ...|++++.++++++.
T Consensus 213 -------------------------~~~~~~~d~~i~~wd~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~ 261 (466)
T COG2319 213 -------------------------LIASGSSDGTIRLWDLSTGKLLRS-----TLSGHSDSV-VSSFSPDGSLLASGSS 261 (466)
T ss_pred -------------------------EEEEecCCCcEEEEECCCCcEEee-----ecCCCCcce-eEeECCCCCEEEEecC
Confidence 244458999999999887766631 466676664 3378898878888888
Q ss_pred CCCEEEEEECCCCeE-EEEe-cCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEec-ccCCcceEEEEEcCCC
Q 001349 1002 DGAAVKMWSTSNYNM-VGSL-PTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQ-TGTSGKVQCMALDDNE 1076 (1094)
Q Consensus 1002 Dg~~I~iwd~~~~~~-~~~~-~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~-~~h~~~I~~l~~Spdg 1076 (1094)
|+ .+++||...... ...+ .|...+.++.|+|+ .+++++.|+.+.+||..+........ ..|...+..+.|.+++
T Consensus 262 d~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (466)
T COG2319 262 DG-TIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDG 340 (466)
T ss_pred CC-cEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCC
Confidence 86 999999986654 4444 46788999999984 66668888999999998887666653 3677789999994343
Q ss_pred CEEEEE-eCCCcEEEEeC
Q 001349 1077 EFLVIG-TSDGRIQAWGL 1093 (1094)
Q Consensus 1077 ~~L~sg-s~DG~I~iWdl 1093 (1094)
..++.+ ..|+.+.+|++
T Consensus 341 ~~~~~~~~~d~~~~~~~~ 358 (466)
T COG2319 341 SLLVSGGSDDGTIRLWDL 358 (466)
T ss_pred CEEEEeecCCCcEEeeec
Confidence 566655 68899999986
No 175
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.62 E-value=3.4e-13 Score=154.45 Aligned_cols=267 Identities=12% Similarity=0.178 Sum_probs=170.8
Q ss_pred EEEeeCCCCeEEEeCCc-----ceeecccCCCcEEEEEEeCC--EEEEE-ECCCeEEEEecC-CCcceeEEEecccCCCe
Q 001349 788 VLSNGHDSSADFWNHRE-----LVHVDSSENGKVLSIACFRD--KIFSG-HSDGTIKVWTGR-GSILHLIQQIREHTKAV 858 (1094)
Q Consensus 788 l~s~s~dg~I~vWd~~~-----~~~~~~~h~~~V~~l~fspd--~LaSg-s~Dg~I~vWd~~-t~~~~~~~~l~~H~~~V 858 (1094)
+++.+.++.|.+|++.. ..... .+.+....++++|+ +|+++ ..++.|.+|++. ++.+..+.... ..+..
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~-~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p 82 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVV-DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSP 82 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEE-ecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCc
Confidence 44557789999999852 22333 24466788999987 66555 468999999997 34333333332 33456
Q ss_pred EEEEEecCCCEEEEEeC-CCcEEEEECCCCc-e-EEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCC
Q 001349 859 TGLAILQSGEMLYSGSL-DKTARVWSIGNEE-I-HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS 935 (1094)
Q Consensus 859 ~sv~fspdg~~LaSgs~-DgtI~vWdi~~~~-~-~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~ 935 (1094)
..++|+|+|+++++++. ++.|.+|++++.. . ............. .+.|+|+|+.+
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~-------~~~~~p~g~~l--------------- 140 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCH-------SANIDPDNRTL--------------- 140 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCccc-------EeEeCCCCCEE---------------
Confidence 78999999999988875 8899999997421 1 1111111111122 23377777753
Q ss_pred CCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEe-ccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCC-
Q 001349 936 KYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQ-TGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSN- 1013 (1094)
Q Consensus 936 ~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~-~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~- 1013 (1094)
+++...++.|.+||+.+...+... ....... .......+.|+|++.++++....+++|.+||+..
T Consensus 141 ------------~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~ 207 (330)
T PRK11028 141 ------------WVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDP 207 (330)
T ss_pred ------------EEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCC
Confidence 344556789999999763322110 0000111 1234568999999999888776446999999973
Q ss_pred -C--eEEEEec-------CCCCEEEEEEeCC--EEEEEE-cCCeEEEEECCCCc----EEEEecccCCcceEEEEEcCCC
Q 001349 1014 -Y--NMVGSLP-------TLSEVRAMVVSSE--LVYLGC-KGGTVEIWDQKRQI----RIETLQTGTSGKVQCMALDDNE 1076 (1094)
Q Consensus 1014 -~--~~~~~~~-------~~~~v~~l~~spd--~l~sgs-~dg~I~vwd~~t~~----~~~~l~~~h~~~I~~l~~Spdg 1076 (1094)
+ +.+..+. +......+.++|+ +++++. .++.|.+|++.... .+..+..+ .....+.|+|||
T Consensus 208 ~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~--~~p~~~~~~~dg 285 (330)
T PRK11028 208 HGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE--TQPRGFNIDHSG 285 (330)
T ss_pred CCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc--ccCCceEECCCC
Confidence 3 2333332 1123346889998 777775 47899999986432 23333222 245688999999
Q ss_pred CEEEEEeC-CCcEEEEeC
Q 001349 1077 EFLVIGTS-DGRIQAWGL 1093 (1094)
Q Consensus 1077 ~~L~sgs~-DG~I~iWdl 1093 (1094)
++|++++. +++|.+|++
T Consensus 286 ~~l~va~~~~~~v~v~~~ 303 (330)
T PRK11028 286 KYLIAAGQKSHHISVYEI 303 (330)
T ss_pred CEEEEEEccCCcEEEEEE
Confidence 99998775 899999976
No 176
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.62 E-value=2.2e-14 Score=153.63 Aligned_cols=207 Identities=17% Similarity=0.247 Sum_probs=158.0
Q ss_pred eeecccCCCcEEEEEEeC--C-EEEEEECCCeEEEEecCCCc-----ceeEEEecccCCCeEEEEEecC-CCEEEEEeCC
Q 001349 806 VHVDSSENGKVLSIACFR--D-KIFSGHSDGTIKVWTGRGSI-----LHLIQQIREHTKAVTGLAILQS-GEMLYSGSLD 876 (1094)
Q Consensus 806 ~~~~~~h~~~V~~l~fsp--d-~LaSgs~Dg~I~vWd~~t~~-----~~~~~~l~~H~~~V~sv~fspd-g~~LaSgs~D 876 (1094)
.....||+++|..++|+| | .|||||.|.+|.||++..+. ..++..+.+|...|.-|.|+|. .+.|+|+|.|
T Consensus 74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D 153 (472)
T KOG0303|consen 74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD 153 (472)
T ss_pred CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence 456789999999999998 3 99999999999999987542 2457788999999999999995 6789999999
Q ss_pred CcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCe
Q 001349 877 KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGA 956 (1094)
Q Consensus 877 gtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~ 956 (1094)
.+|.+||+.+|+- +....|.+-|.++. |+.||.. +++.+.|..
T Consensus 154 n~v~iWnv~tgea--li~l~hpd~i~S~s-------fn~dGs~----------------------------l~TtckDKk 196 (472)
T KOG0303|consen 154 NTVSIWNVGTGEA--LITLDHPDMVYSMS-------FNRDGSL----------------------------LCTTCKDKK 196 (472)
T ss_pred ceEEEEeccCCce--eeecCCCCeEEEEE-------eccCCce----------------------------eeeecccce
Confidence 9999999999962 22233788888887 7777764 888999999
Q ss_pred EEEEECCCCceeEEeccceeecCCCC-CeEEEEEeCCccEEEEEEC--CCCEEEEEECCCCe---EEEEecCCCCEEEEE
Q 001349 957 IQEIDLATGTFATIQTGHRKLLGKAN-PVHALQVHNGLVYTASTSL--DGAAVKMWSTSNYN---MVGSLPTLSEVRAMV 1030 (1094)
Q Consensus 957 I~iwDl~~~~~~~~~~~~~~~~~h~~-~V~sl~fs~~~~~las~s~--Dg~~I~iwd~~~~~---~~~~~~~~~~v~~l~ 1030 (1094)
|++||.++++.+..- .+|.+ .-..+.|-.++.++.+|-. ..+.+-+||..+-+ ....+...+.|.---
T Consensus 197 vRv~dpr~~~~v~e~------~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PF 270 (472)
T KOG0303|consen 197 VRVIDPRRGTVVSEG------VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPF 270 (472)
T ss_pred eEEEcCCCCcEeeec------ccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEee
Confidence 999999999988532 34442 2334556666664444321 23589999987643 344555677787778
Q ss_pred EeCC---EEEEEEcCCeEEEEECCCCcE
Q 001349 1031 VSSE---LVYLGCKGGTVEIWDQKRQIR 1055 (1094)
Q Consensus 1031 ~spd---~l~sgs~dg~I~vwd~~t~~~ 1055 (1094)
+++| ..++|-.|+.||.|.+..-.+
T Consensus 271 yD~dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 271 YDPDTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred ecCCCCEEEEEecCCcceEEEEecCCCc
Confidence 8888 445566899999999877653
No 177
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=5.4e-14 Score=165.99 Aligned_cols=272 Identities=13% Similarity=0.198 Sum_probs=180.2
Q ss_pred cccCcEEEEeeCCCCeEEEeCCcc--eeeccc---CCCcEEEEEEeCC----EEEEEECCCeEEEEec-CC--CcceeEE
Q 001349 782 AFEMVKVLSNGHDSSADFWNHREL--VHVDSS---ENGKVLSIACFRD----KIFSGHSDGTIKVWTG-RG--SILHLIQ 849 (1094)
Q Consensus 782 ~~d~~~l~s~s~dg~I~vWd~~~~--~~~~~~---h~~~V~~l~fspd----~LaSgs~Dg~I~vWd~-~t--~~~~~~~ 849 (1094)
.+--..++++...-.|+|||+... ...+.. ....|+.+.+-++ ++.+|+.||.|+||+- .+ ++.+.+.
T Consensus 1073 hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVT 1152 (1387)
T KOG1517|consen 1073 HPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVT 1152 (1387)
T ss_pred cCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEE
Confidence 333446777777789999999832 222222 2467999999863 9999999999999963 22 2234444
Q ss_pred EecccC-------CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEE
Q 001349 850 QIREHT-------KAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKV 922 (1094)
Q Consensus 850 ~l~~H~-------~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~ 922 (1094)
.+.+-+ +.=.-++|.....+|+++|+-..|+|||........-........++++. ++-
T Consensus 1153 aw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS---------~~~----- 1218 (1387)
T KOG1517|consen 1153 AWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALS---------ADL----- 1218 (1387)
T ss_pred eeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeec---------ccc-----
Confidence 433211 11133577775556666666789999999885311111111122222221 110
Q ss_pred EEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCC--eEEEEEeCCccE-EEEE
Q 001349 923 HLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANP--VHALQVHNGLVY-TAST 999 (1094)
Q Consensus 923 ~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~--V~sl~fs~~~~~-las~ 999 (1094)
...+.+++|..||.|++||.+...... .......|... |..+.+.++|.- ++++
T Consensus 1219 --------------------~~gn~i~AGfaDGsvRvyD~R~a~~ds---~v~~~R~h~~~~~Iv~~slq~~G~~elvSg 1275 (1387)
T KOG1517|consen 1219 --------------------VHGNIIAAGFADGSVRVYDRRMAPPDS---LVCVYREHNDVEPIVHLSLQRQGLGELVSG 1275 (1387)
T ss_pred --------------------cCCceEEEeecCCceEEeecccCCccc---cceeecccCCcccceeEEeecCCCcceeee
Confidence 013468999999999999988654321 11345567766 999999876555 8999
Q ss_pred ECCCCEEEEEECCCCeEEEEec---C---CCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEec------ccCCc
Q 001349 1000 SLDGAAVKMWSTSNYNMVGSLP---T---LSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQ------TGTSG 1065 (1094)
Q Consensus 1000 s~Dg~~I~iwd~~~~~~~~~~~---~---~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~------~~h~~ 1065 (1094)
+.+| .|++||++.......+. | ++..+++.++++ .+++|+. +.|.||++...+ +..++ ....+
T Consensus 1276 s~~G-~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~-l~~~k~n~~F~~q~~g 1352 (1387)
T KOG1517|consen 1276 SQDG-DIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQ-LNIIKYNPGFMGQRIG 1352 (1387)
T ss_pred ccCC-eEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhh-hcccccCcccccCcCC
Confidence 9997 99999999753222222 2 345999999987 8888888 999999986433 33332 12334
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1066 KVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1066 ~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
.++|++|+|..-.+++|+.|.+|.||..
T Consensus 1353 s~scL~FHP~~~llAaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1353 SVSCLAFHPHRLLLAAGSADSTVSIYSC 1380 (1387)
T ss_pred CcceeeecchhHhhhhccCCceEEEeec
Confidence 7899999999999999999999999964
No 178
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.59 E-value=4.3e-14 Score=159.00 Aligned_cols=252 Identities=14% Similarity=0.190 Sum_probs=195.1
Q ss_pred ccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEE
Q 001349 775 LRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQ 850 (1094)
Q Consensus 775 ~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~ 850 (1094)
.+.-.++.|||..++.+..+ .+.+||.. ...+++.+|.+.|+|++|+.| .++||+.|..|.+|+-.-. -.+ .
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE--G~L-k 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE--GIL-K 89 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccc--cee-e
Confidence 44557788999988776554 57789998 678899999999999999987 9999999999999987543 122 2
Q ss_pred ecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEE
Q 001349 851 IREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTK 930 (1094)
Q Consensus 851 l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~ 930 (1094)
+ .|++.|.|+.|+|-...|+|++-. ..-+|..... .+..+.....+.+.+ |..||++++.+..+|++.
T Consensus 90 Y-SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK---~V~K~kss~R~~~Cs-------WtnDGqylalG~~nGTIs 157 (1081)
T KOG1538|consen 90 Y-SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQK---SVSKHKSSSRIICCS-------WTNDGQYLALGMFNGTIS 157 (1081)
T ss_pred e-ccCCeeeEeecCchHHHhhhcchh-hccccChhhh---hHHhhhhheeEEEee-------ecCCCcEEEEeccCceEE
Confidence 2 599999999999999999999874 4678988763 222233334455544 999999999999999998
Q ss_pred EEcC--------------CCCceEEEEeCC-------EEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEE
Q 001349 931 LLNS--------------SKYPKCLALVQG-------KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQV 989 (1094)
Q Consensus 931 l~~~--------------~~~v~~l~~s~~-------~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~f 989 (1094)
+-+. +..|.+++++++ .+++.....++.+|.+. |+.+. +-..-.....|+.+
T Consensus 158 iRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Ig------k~r~L~FdP~CisY 230 (1081)
T KOG1538|consen 158 IRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIG------KDRALNFDPCCISY 230 (1081)
T ss_pred eecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeec------ccccCCCCchhhee
Confidence 7763 457899999752 37788888888888775 44331 11112234568889
Q ss_pred eCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECC
Q 001349 990 HNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQK 1051 (1094)
Q Consensus 990 s~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~ 1051 (1094)
.++|.|+..|+.|+ .+++|. +.|-.+.++. ...+|+.++..|+ +++.|+.||+|-.|++.
T Consensus 231 f~NGEy~LiGGsdk-~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 231 FTNGEYILLGGSDK-QLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred ccCCcEEEEccCCC-ceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 99999999999886 888885 5677777776 5789999999999 89999999999999864
No 179
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.58 E-value=8.1e-14 Score=149.29 Aligned_cols=217 Identities=15% Similarity=0.154 Sum_probs=152.7
Q ss_pred ccccCcEEEEeeCCCCeEEEeCC---------cceeecccCCCcEEEEEEeC---CEEEEEECCCeEEEEecCCCcceeE
Q 001349 781 LAFEMVKVLSNGHDSSADFWNHR---------ELVHVDSSENGKVLSIACFR---DKIFSGHSDGTIKVWTGRGSILHLI 848 (1094)
Q Consensus 781 ~~~d~~~l~s~s~dg~I~vWd~~---------~~~~~~~~h~~~V~~l~fsp---d~LaSgs~Dg~I~vWd~~t~~~~~~ 848 (1094)
--|+...||+||.|.+|.||.+. .....+.+|...|.-+.|+| +.|+|++.|.+|.+||+.|+ ..+
T Consensus 90 ~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tg--eal 167 (472)
T KOG0303|consen 90 CPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTG--EAL 167 (472)
T ss_pred CccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCC--cee
Confidence 34577899999999999999875 34667889999999999999 49999999999999999999 666
Q ss_pred EEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEE-ecccCccceeeeecCceEEEeeCCCeEEEEEeCC
Q 001349 849 QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQ-VHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNG 927 (1094)
Q Consensus 849 ~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~-~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g 927 (1094)
.++. |.+-|+++.|+.||.+|+|++.|+.|||||.++++..... .+....+... .|..+|. +++.+.
T Consensus 168 i~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Ra--------ifl~~g~-i~tTGf-- 235 (472)
T KOG0303|consen 168 ITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARA--------IFLASGK-IFTTGF-- 235 (472)
T ss_pred eecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCccee--------EEeccCc-eeeecc--
Confidence 6776 9999999999999999999999999999999998743333 2222222222 2666665 222221
Q ss_pred eEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEE
Q 001349 928 KTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVK 1007 (1094)
Q Consensus 928 ~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~ 1007 (1094)
+-..+..+-+||..+-.....+ ..+ ..++.|.---|++|...+..++..++.|+
T Consensus 236 ----------------------sr~seRq~aLwdp~nl~eP~~~---~el-DtSnGvl~PFyD~dt~ivYl~GKGD~~IR 289 (472)
T KOG0303|consen 236 ----------------------SRMSERQIALWDPNNLEEPIAL---QEL-DTSNGVLLPFYDPDTSIVYLCGKGDSSIR 289 (472)
T ss_pred ----------------------ccccccceeccCcccccCccee---EEe-ccCCceEEeeecCCCCEEEEEecCCcceE
Confidence 2235677888887664432111 111 12234443445677666666665556999
Q ss_pred EEECCCCeE----EEEecCCCCEEEEEEeCCEEE
Q 001349 1008 MWSTSNYNM----VGSLPTLSEVRAMVVSSELVY 1037 (1094)
Q Consensus 1008 iwd~~~~~~----~~~~~~~~~v~~l~~spd~l~ 1037 (1094)
-|.+.+-.+ +.+|....+-.++.|-|..-+
T Consensus 290 YyEit~d~P~~hyln~f~S~epQRG~g~mPKRGl 323 (472)
T KOG0303|consen 290 YFEITNEPPFVHYLNTFSSKEPQRGMGFMPKRGL 323 (472)
T ss_pred EEEecCCCceeEEecccccCCccccccccccccc
Confidence 999976542 334445566677777776433
No 180
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.58 E-value=8.8e-14 Score=151.81 Aligned_cols=267 Identities=13% Similarity=0.133 Sum_probs=193.5
Q ss_pred ccccccccc-C-cEEEEeeCCCCeEEEeCC------cceeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCc
Q 001349 776 RKYSPLAFE-M-VKVLSNGHDSSADFWNHR------ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSI 844 (1094)
Q Consensus 776 ~~~~~~~~d-~-~~l~s~s~dg~I~vWd~~------~~~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~ 844 (1094)
+....|.+. . +.+++|...|.|-+||+. .....+..|.++|.++.|+|. .+++.|+||+|+.-|++++.
T Consensus 189 it~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i 268 (498)
T KOG4328|consen 189 ITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNI 268 (498)
T ss_pred eEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchh
Confidence 334444442 2 478888899999999994 456778899999999999993 99999999999999999886
Q ss_pred ceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCC-eEEEE
Q 001349 845 LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGA-GIKVH 923 (1094)
Q Consensus 845 ~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~-~l~~~ 923 (1094)
...+.........+.++.|+.+...++.|..=|...+||.+++.-......-|+..|.+++ +.|... .++++
T Consensus 269 ~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~-------~NP~~p~~laT~ 341 (498)
T KOG4328|consen 269 SEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVA-------LNPVCPWFLATA 341 (498)
T ss_pred hHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceee-------cCCCCchheeec
Confidence 5556555545566788999988888888888789999999987643444444566899988 666554 66788
Q ss_pred EeCCeEEEEcC----------------CCCceEEEEeC--CEEEEEEcCCeEEEEECC----CCceeEEeccceeecCCC
Q 001349 924 LRNGKTKLLNS----------------SKYPKCLALVQ--GKVYCGCQDGAIQEIDLA----TGTFATIQTGHRKLLGKA 981 (1094)
Q Consensus 924 ~~~g~i~l~~~----------------~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~----~~~~~~~~~~~~~~~~h~ 981 (1094)
+.|++.++||. ...|.+..|+| +.|++.+.|..|++||.. .......... ....+.-
T Consensus 342 s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~H-n~~t~Rw 420 (498)
T KOG4328|consen 342 SLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPH-NNRTGRW 420 (498)
T ss_pred ccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeec-cCccccc
Confidence 88999999984 34577777875 679999999999999974 2222211111 1111111
Q ss_pred CCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCC--CCEEE-EEEeCC--EEEEE-EcCCeEEEEECC
Q 001349 982 NPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTL--SEVRA-MVVSSE--LVYLG-CKGGTVEIWDQK 1051 (1094)
Q Consensus 982 ~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~--~~v~~-l~~spd--~l~sg-s~dg~I~vwd~~ 1051 (1094)
-......|+|+..+++.+..-. .|-|+|-..++.+..+... ..|.+ ..|+|- .+++| +..|.|+||--+
T Consensus 421 lT~fKA~W~P~~~li~vg~~~r-~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 421 LTPFKAAWDPDYNLIVVGRYPR-PIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred ccchhheeCCCccEEEEeccCc-ceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 1234567999999999987764 8999999999888876632 23433 467775 35554 467889988654
No 181
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.57 E-value=2e-13 Score=140.79 Aligned_cols=258 Identities=18% Similarity=0.207 Sum_probs=178.7
Q ss_pred CCCeEEEeCCc-----ceeecccCCCcEEEEEEeCC---EEEEEECC-------CeEEEEecCCCc-------ceeEEEe
Q 001349 794 DSSADFWNHRE-----LVHVDSSENGKVLSIACFRD---KIFSGHSD-------GTIKVWTGRGSI-------LHLIQQI 851 (1094)
Q Consensus 794 dg~I~vWd~~~-----~~~~~~~h~~~V~~l~fspd---~LaSgs~D-------g~I~vWd~~t~~-------~~~~~~l 851 (1094)
|+.|.+-+++. ...++..|.+.|+.++-+|- .|+|+..+ ..+.||.+.... +.++..+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 46676666651 23567778999999999983 66666542 347899876431 2334444
Q ss_pred c-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecc-----cCccceeeeecCceEEEeeCCCeEEEEEe
Q 001349 852 R-EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHD-----IKDQIQNLAVSNSILCFIPQGAGIKVHLR 925 (1094)
Q Consensus 852 ~-~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~-----~~~~V~~v~~~~~~~~fspdg~~l~~~~~ 925 (1094)
. .+-+.|.|+.|.|++..+++-. |..|.+|++..+......... +.....+-. |+|.
T Consensus 119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~-------WspH--------- 181 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGA-------WSPH--------- 181 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccc-------cCCC---------
Confidence 3 5667899999999999999877 778999999886421111110 000111111 2221
Q ss_pred CCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccE-EEEEECCCC
Q 001349 926 NGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVY-TASTSLDGA 1004 (1094)
Q Consensus 926 ~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~-las~s~Dg~ 1004 (1094)
+++.-+....|+++..||+++..... ..-..|...|..+.|+|+..+ +++++.| +
T Consensus 182 ------------------Hdgnqv~tt~d~tl~~~D~RT~~~~~-----sI~dAHgq~vrdlDfNpnkq~~lvt~gDd-g 237 (370)
T KOG1007|consen 182 ------------------HDGNQVATTSDSTLQFWDLRTMKKNN-----SIEDAHGQRVRDLDFNPNKQHILVTCGDD-G 237 (370)
T ss_pred ------------------CccceEEEeCCCcEEEEEccchhhhc-----chhhhhcceeeeccCCCCceEEEEEcCCC-c
Confidence 12335556789999999999877653 233568889999999988665 5555555 5
Q ss_pred EEEEEECCC-CeEEEEec-CCCCEEEEEEeCC---EEEEEEcCCeEEEEECCCC--------------------------
Q 001349 1005 AVKMWSTSN-YNMVGSLP-TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQ-------------------------- 1053 (1094)
Q Consensus 1005 ~I~iwd~~~-~~~~~~~~-~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~-------------------------- 1053 (1094)
.|+|||.++ ..+++.+. |..+|+++.|+|. ++.+|+.|..|.+|...+-
T Consensus 238 yvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kp 317 (370)
T KOG1007|consen 238 YVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKP 317 (370)
T ss_pred cEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccc
Confidence 999999986 45777777 7889999999986 7999999999999964321
Q ss_pred ---cEEEEecccCCcceEEEEEcCCCCE-EEEEeCCCcEEEEeC
Q 001349 1054 ---IRIETLQTGTSGKVQCMALDDNEEF-LVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1054 ---~~~~~l~~~h~~~I~~l~~Spdg~~-L~sgs~DG~I~iWdl 1093 (1094)
..+.++ ..|.+.|.+++||.-..+ +++-+.||++.|=.+
T Consensus 318 L~dg~l~ty-dehEDSVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 318 LQDGQLETY-DEHEDSVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred ccccccccc-cccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 123345 468899999999886665 567799999877443
No 182
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.56 E-value=3.3e-15 Score=126.05 Aligned_cols=63 Identities=44% Similarity=0.876 Sum_probs=59.4
Q ss_pred ceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHH
Q 001349 163 DFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASW 227 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~ 227 (1094)
+|.||||+++|+|||+++|||+||+.||.+|+.. +..||.|++.++..+++ ||..|++.|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~-~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLI-PNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhce-eCHHHHHHHHhC
Confidence 5789999999999999999999999999999987 66899999999999997 999999999987
No 183
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.55 E-value=5.4e-13 Score=160.25 Aligned_cols=261 Identities=19% Similarity=0.237 Sum_probs=181.6
Q ss_pred EeCC-cceeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCC-----CcceeEEEecccCCCeEEEEEecCCCEE
Q 001349 800 WNHR-ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRG-----SILHLIQQIREHTKAVTGLAILQSGEML 870 (1094)
Q Consensus 800 Wd~~-~~~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t-----~~~~~~~~l~~H~~~V~sv~fspdg~~L 870 (1094)
|+.+ ..+..+..|...|..++.+++ +++|||.||+|++||... +..+...++..-.+.+.++.+.+.|+.+
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence 7776 455667788999999999874 999999999999999753 2234555555567889999999999999
Q ss_pred EEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEe---CC-
Q 001349 871 YSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALV---QG- 946 (1094)
Q Consensus 871 aSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s---~~- 946 (1094)
|.++.||.|++.+++.......... ...+.... .+|. .+...++. ..
T Consensus 1114 Av~t~DG~v~~~~id~~~~~~~~~~--~~ri~n~~---------~~g~------------------vv~m~a~~~~~~S~ 1164 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVAT--QVRIPNLK---------KDGV------------------VVSMHAFTAIVQSH 1164 (1431)
T ss_pred EEEcCCCeEEEEEccccccccceee--eeeccccc---------CCCc------------------eEEeecccccccce
Confidence 9999999999999987310000000 00000000 0010 01111111 11
Q ss_pred EEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecC--CC
Q 001349 947 KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT--LS 1024 (1094)
Q Consensus 947 ~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~--~~ 1024 (1094)
.++.+...+.|..||++........+ .....+.|++++.+|.+.+++.|+..| .+.+||++-+.++.++.+ ..
T Consensus 1165 ~lvy~T~~~~iv~~D~r~~~~~w~lk----~~~~hG~vTSi~idp~~~WlviGts~G-~l~lWDLRF~~~i~sw~~P~~~ 1239 (1431)
T KOG1240|consen 1165 VLVYATDLSRIVSWDTRMRHDAWRLK----NQLRHGLVTSIVIDPWCNWLVIGTSRG-QLVLWDLRFRVPILSWEHPARA 1239 (1431)
T ss_pred eEEEEEeccceEEecchhhhhHHhhh----cCccccceeEEEecCCceEEEEecCCc-eEEEEEeecCceeecccCcccC
Confidence 47778889999999999876554322 223347899999999999999999887 999999999998888774 56
Q ss_pred CEEEEEEeCC-----E-EEEEE-cCCeEEEEECCCCcEEEEecccCCc------------------ceEEEEEcCCCCEE
Q 001349 1025 EVRAMVVSSE-----L-VYLGC-KGGTVEIWDQKRQIRIETLQTGTSG------------------KVQCMALDDNEEFL 1079 (1094)
Q Consensus 1025 ~v~~l~~spd-----~-l~sgs-~dg~I~vwd~~t~~~~~~l~~~h~~------------------~I~~l~~Spdg~~L 1079 (1094)
++..+..+|- . +.+|+ ..+.|.+|++.+|.+-.++..+... ......+...+.++
T Consensus 1240 ~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ 1319 (1431)
T KOG1240|consen 1240 PIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFL 1319 (1431)
T ss_pred CcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCcee
Confidence 6777777653 3 44444 6789999999999877777533110 11223343445689
Q ss_pred EEEeCCCcEEEEeCC
Q 001349 1080 VIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1080 ~sgs~DG~I~iWdls 1094 (1094)
.+|+.|+.|+.||.+
T Consensus 1320 ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1320 LTGGSDMKIRKWDPT 1334 (1431)
T ss_pred eecCCccceeeccCC
Confidence 999999999999974
No 184
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.54 E-value=1.9e-12 Score=138.46 Aligned_cols=234 Identities=16% Similarity=0.222 Sum_probs=166.4
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEe--eCCCeEEEEEeCCeEEEE
Q 001349 855 TKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFI--PQGAGIKVHLRNGKTKLL 932 (1094)
Q Consensus 855 ~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fs--pdg~~l~~~~~~g~i~l~ 932 (1094)
...+..+.|+.|...|..|+.|| .++|...... ++.........|..+-++.+.+++. ++++.+.+........+-
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~-k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~IC 82 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFE-KCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTIC 82 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchH-HhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEE
Confidence 34567777999999999999998 6788876543 1222222223344444444444332 233333333333222221
Q ss_pred --cCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEE-ECCCCEEEEE
Q 001349 933 --NSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTAST-SLDGAAVKMW 1009 (1094)
Q Consensus 933 --~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~-s~Dg~~I~iw 1009 (1094)
.-...|-++.++..++++.=.+. |++||+++.+.+.+.. ....+...+..+.+++++.|++-- +.+.+.|.+|
T Consensus 83 e~~fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~---t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~ 158 (391)
T KOG2110|consen 83 EIFFPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIE---TTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLF 158 (391)
T ss_pred EEecCCceEEEEEccceEEEEEccc-EEEEecccceeehhhh---ccCCCccceEeeccCCCCceEEecCCCCCceEEEE
Confidence 22456777777777877766554 9999999998875432 222455567777777766676653 3344599999
Q ss_pred ECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCe-EEEEECCCCcEEEEecccCC-cceEEEEEcCCCCEEEEEeC
Q 001349 1010 STSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGT-VEIWDQKRQIRIETLQTGTS-GKVQCMALDDNEEFLVIGTS 1084 (1094)
Q Consensus 1010 d~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~-I~vwd~~t~~~~~~l~~~h~-~~I~~l~~Spdg~~L~sgs~ 1084 (1094)
|+.+-+++..+. |.+.+.+++|+++ +++++|+.|+ ||||.+.+|+.+..|..|.. ..|.+++|+||+++|++.|+
T Consensus 159 d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~ 238 (391)
T KOG2110|consen 159 DTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSN 238 (391)
T ss_pred EcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecC
Confidence 999999999998 8999999999999 8999999886 79999999999999976543 37899999999999999999
Q ss_pred CCcEEEEeCC
Q 001349 1085 DGRIQAWGLS 1094 (1094)
Q Consensus 1085 DG~I~iWdls 1094 (1094)
.++|+||.+.
T Consensus 239 TeTVHiFKL~ 248 (391)
T KOG2110|consen 239 TETVHIFKLE 248 (391)
T ss_pred CCeEEEEEec
Confidence 9999999873
No 185
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.54 E-value=4.9e-13 Score=138.24 Aligned_cols=263 Identities=14% Similarity=0.228 Sum_probs=183.7
Q ss_pred cEEEEeeC----CCCeEEEeCC----c-ceeecccCCCcEEEEEEeCC-------EEEEEECCCeEEEEecCC--Cccee
Q 001349 786 VKVLSNGH----DSSADFWNHR----E-LVHVDSSENGKVLSIACFRD-------KIFSGHSDGTIKVWTGRG--SILHL 847 (1094)
Q Consensus 786 ~~l~s~s~----dg~I~vWd~~----~-~~~~~~~h~~~V~~l~fspd-------~LaSgs~Dg~I~vWd~~t--~~~~~ 847 (1094)
.+++.|+. .+.|.|-... + .......|.-+++.+.|.|+ +|||.+ ..+|+|.+.. +...+
T Consensus 60 ~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~ 137 (364)
T KOG0290|consen 60 FRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVEL 137 (364)
T ss_pred eeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceeh
Confidence 36777765 3566665443 1 11122578899999999985 566554 4799998873 32222
Q ss_pred EEEe-----cccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCce--EEEEecccCccceeeeecCceEEEeeCCCe
Q 001349 848 IQQI-----REHTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEEI--HCVQVHDIKDQIQNLAVSNSILCFIPQGAG 919 (1094)
Q Consensus 848 ~~~l-----~~H~~~V~sv~fsp-dg~~LaSgs~DgtI~vWdi~~~~~--~~~~~~~~~~~V~~v~~~~~~~~fspdg~~ 919 (1094)
...+ ..|..++++..|+. |.++|.+.|-|-|..|||+.+|.. ...+...|...|..++ |..+|..
T Consensus 138 ~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIa-------f~~~s~~ 210 (364)
T KOG0290|consen 138 QSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIA-------FLKGSRD 210 (364)
T ss_pred hhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEE-------eccCccc
Confidence 1112 34667899999998 889999999999999999998732 2233344556666665 4443332
Q ss_pred EEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEE-eccceeecCCCCCeEEEEEe-CCccEEE
Q 001349 920 IKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATI-QTGHRKLLGKANPVHALQVH-NGLVYTA 997 (1094)
Q Consensus 920 l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~-~~~~~~~~~h~~~V~sl~fs-~~~~~la 997 (1094)
.+++.+.||+|++||++.-....+ +... ....+...++|+ .|-.+++
T Consensus 211 ---------------------------~FASvgaDGSvRmFDLR~leHSTIIYE~p----~~~~pLlRLswnkqDpnymA 259 (364)
T KOG0290|consen 211 ---------------------------VFASVGADGSVRMFDLRSLEHSTIIYEDP----SPSTPLLRLSWNKQDPNYMA 259 (364)
T ss_pred ---------------------------eEEEecCCCcEEEEEecccccceEEecCC----CCCCcceeeccCcCCchHHh
Confidence 489999999999999997665432 2211 113577788887 4677889
Q ss_pred EEECCCCEEEEEECCC-CeEEEEec-CCCCEEEEEEeCC---EEEEEEcCCeEEEEECCCCc------EEEEecccCCcc
Q 001349 998 STSLDGAAVKMWSTSN-YNMVGSLP-TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQI------RIETLQTGTSGK 1066 (1094)
Q Consensus 998 s~s~Dg~~I~iwd~~~-~~~~~~~~-~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~~------~~~~l~~~h~~~ 1066 (1094)
+...|...|.|.|++. ..++..+. |.+.|++++|.|. .+.++++|..+-+||+...- ++..+. ..+.
T Consensus 260 Tf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~--a~~E 337 (364)
T KOG0290|consen 260 TFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT--AGGE 337 (364)
T ss_pred hhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh--ccce
Confidence 9888888999999986 45667776 8899999999987 89999999999999987532 223332 3457
Q ss_pred eEEEEEcC-CCCEEEEEeCCCcEEEE
Q 001349 1067 VQCMALDD-NEEFLVIGTSDGRIQAW 1091 (1094)
Q Consensus 1067 I~~l~~Sp-dg~~L~sgs~DG~I~iW 1091 (1094)
|+.+.|++ .+.+++.+. ++++.|-
T Consensus 338 VNqi~Ws~~~~Dwiai~~-~kkleiL 362 (364)
T KOG0290|consen 338 VNQIQWSSSQPDWIAICF-GKKLEIL 362 (364)
T ss_pred eeeeeecccCCCEEEEEe-cCeeeEE
Confidence 99999996 456777665 4455543
No 186
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.53 E-value=1.2e-12 Score=170.71 Aligned_cols=324 Identities=13% Similarity=0.107 Sum_probs=228.2
Q ss_pred HHHHHHHHHHhhhcc-ccchHhHHHHHHHHHHHHHhccchHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcc
Q 001349 265 TITELKHAITSLCMS-EILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGS 343 (1094)
Q Consensus 265 ~~~~l~~~i~~L~~s-~~l~~~e~a~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s 343 (1094)
........+++|... ...++++.|+.+|+++++...+++.+.. ..+.++.-++.+|. +.+..+++.++++|.+| +
T Consensus 11 ~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia--~~aGaIP~LV~lL~-sg~~~vk~nAaaaL~nL-S 86 (2102)
T PLN03200 11 TLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIG--SHSQAMPLLVSLLR-SGTLGAKVNAAAVLGVL-C 86 (2102)
T ss_pred hHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHH--HccCcHHHHHHHHc-CCCHHHHHHHHHHHHHH-h
Confidence 366778888888854 2456689999999999999998877662 12233333444443 56788999999999999 4
Q ss_pred cccchhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCCC---hHHHH----HhhhhHHHHHHHHhcccccccccc
Q 001349 344 RDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPS---TRTLI----EMDMMESLMTVIKKKEEDFLKMCL 412 (1094)
Q Consensus 344 ~~~~~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~---~~~~~----~~~~~~~Ll~~l~~~~~~~~~~~~ 412 (1094)
.++.++..|+. .|.+++|+.+|++| +..||.+||.|+.. +.+.. .-|.+|+|+++|+.|+....
T Consensus 87 ~~e~nk~~Iv~-~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~---- 161 (2102)
T PLN03200 87 KEEDLRVKVLL-GGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDK---- 161 (2102)
T ss_pred cCHHHHHHHHH-cCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhH----
Confidence 55668888885 78999999999998 66778899999775 43332 34556999999999852110
Q ss_pred CchhhHHHHHHHHhcCCcccccccch-hhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchh
Q 001349 413 KPKSVSVLLLGQMIGDSEESIVSSIA-NTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAP 491 (1094)
Q Consensus 413 ~~~~aa~~~l~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~ 491 (1094)
.-+..|+.+|..| +...++. ..++..|++|.|++++.+++...+..|+.+|.+.+..+...+..+.+.+.+++
T Consensus 162 ~L~~~Av~AL~nL------s~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~ 235 (2102)
T PLN03200 162 VVEGLLTGALRNL------CGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQ 235 (2102)
T ss_pred HHHHHHHHHHHHH------hcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHH
Confidence 0122334556655 4455655 56789999999999999999999999999998888887779999999999999
Q ss_pred HHHHHHhcCC-chhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCc-------c--chhHHHHH
Q 001349 492 VMESFMAASD-GERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHD-------Q--CPVVAGLL 561 (1094)
Q Consensus 492 ~~~l~~~~~~-~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~-------~--~~~~a~~l 561 (1094)
|+++|+++++ ..|+.|+..|.++... ..+..+.|.+.|++.. |+.+++....+ | +.-++..|
T Consensus 236 LV~LL~sg~~~~VRE~AA~AL~nLAs~-----s~e~r~~Iv~aGgIp~---LI~lL~sp~~e~~~~~~~~~Lqe~AvwAL 307 (2102)
T PLN03200 236 LLKLLGQGNEVSVRAEAAGALEALSSQ-----SKEAKQAIADAGGIPA---LINATVAPSKEFMQGEFAQALQENAMGAL 307 (2102)
T ss_pred HHHHHccCCChHHHHHHHHHHHHHhcC-----CHHHHHHHHHCCCHHH---HHHHHhCcchhhhccccchHHHHHHHHHH
Confidence 9999987655 7799999999888765 3455566777777666 66666532211 1 22333333
Q ss_pred Hhhhc-----------------------------------ccCCCCCC-ccH-HHHHHHHHHHhhcCCChHHHHHHHHHH
Q 001349 562 LQLDL-----------------------------------LAEPRKMS-IYR-EEAIDTLISCLRNSDYPAAQLAAAKTI 604 (1094)
Q Consensus 562 ~~l~~-----------------------------------~~~~~~~~-~~r-eea~~~~~~~l~~~~~~~~~~~~~~~~ 604 (1094)
.++.- +..+.+.. ++. -.++.+|+..+++.+...+|+.++.||
T Consensus 308 sNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eAL 387 (2102)
T PLN03200 308 ANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEAL 387 (2102)
T ss_pred HHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHH
Confidence 33211 11111111 111 123578999999998777788888888
Q ss_pred Hhccccc
Q 001349 605 VSLQGRF 611 (1094)
Q Consensus 605 ~~l~g~~ 611 (1094)
..|.|..
T Consensus 388 asl~gN~ 394 (2102)
T PLN03200 388 ASLYGNA 394 (2102)
T ss_pred HHhcCCh
Confidence 7655543
No 187
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.51 E-value=3.8e-12 Score=133.49 Aligned_cols=304 Identities=14% Similarity=0.127 Sum_probs=206.8
Q ss_pred cccccccccCcEEEEeeCCCCeEEEeCCc--ceeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcceeEEE
Q 001349 776 RKYSPLAFEMVKVLSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQ 850 (1094)
Q Consensus 776 ~~~~~~~~d~~~l~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~~~~ 850 (1094)
...+.|+++|+++++.+.- .+.|-|..+ ..+.+ .--+.|.-+-|.-| .|.....|+.|.+|++... .-...
T Consensus 11 ~~~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf-~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp--ew~ck 86 (447)
T KOG4497|consen 11 NPFCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF-LCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP--EWYCK 86 (447)
T ss_pred CCceeECCCCCeeeeeeee-EEEEeccchhhHHHHH-HHHHHhhheeeeccceeeeeeeeccceEEEEEeecc--eeEEE
Confidence 3478899999999998776 566667652 11221 11456777888876 6777788999999999988 45556
Q ss_pred ecccCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecC---------------------
Q 001349 851 IREHTKAVTGLAILQSGE-MLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSN--------------------- 908 (1094)
Q Consensus 851 l~~H~~~V~sv~fspdg~-~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~--------------------- 908 (1094)
+.+...++.++.|||||+ .|.+..-|-.|.||.+.+.+...+... +..+..+++.+
T Consensus 87 Ideg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~p--K~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~ 164 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHP--KTNVKGYAFHPDGQFCAILSRRDCKDYVQISS 164 (447)
T ss_pred eccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEeccc--ccCceeEEECCCCceeeeeecccHHHHHHHHh
Confidence 777888999999999995 555666688999999998653332222 22223333111
Q ss_pred -----------------ceEEEeeCCCeEEEEEeC--CeEEEEcCCCCceEEEEeC-C-EEEEEEcCCeEEEEECCCCce
Q 001349 909 -----------------SILCFIPQGAGIKVHLRN--GKTKLLNSSKYPKCLALVQ-G-KVYCGCQDGAIQEIDLATGTF 967 (1094)
Q Consensus 909 -----------------~~~~fspdg~~l~~~~~~--g~i~l~~~~~~v~~l~~s~-~-~l~sgs~Dg~I~iwDl~~~~~ 967 (1094)
..+-|+|||..+++...- -.+..+.-+-.+..+.++| + .+++|+.|+.+++.+--+-+.
T Consensus 165 c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~ 244 (447)
T KOG4497|consen 165 CKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKP 244 (447)
T ss_pred hHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeee
Confidence 134567777766654332 2333444456788888887 4 489999999998755322111
Q ss_pred eEE-------------------------------ecc-----------------------------ceeecCCCCCeEEE
Q 001349 968 ATI-------------------------------QTG-----------------------------HRKLLGKANPVHAL 987 (1094)
Q Consensus 968 ~~~-------------------------------~~~-----------------------------~~~~~~h~~~V~sl 987 (1094)
... +.+ ...+......+.-+
T Consensus 245 f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~l 324 (447)
T KOG4497|consen 245 FGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKL 324 (447)
T ss_pred hhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCccccccee
Confidence 100 000 00011112346788
Q ss_pred EEeCCccEEEEEECC-CCEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCC
Q 001349 988 QVHNGLVYTASTSLD-GAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTS 1064 (1094)
Q Consensus 988 ~fs~~~~~las~s~D-g~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~ 1064 (1094)
+|++|..|+++-... .+.+-+||+++.+....+....+|....|+|. .++.+.....+++|.......+..-..|
T Consensus 325 afs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~G-- 402 (447)
T KOG4497|consen 325 AFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKG-- 402 (447)
T ss_pred eecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCC--
Confidence 999999998886421 14799999998777666667889999999998 6777777778999998776555554333
Q ss_pred cceEEEEEcCCCCEEEEEeCCCc
Q 001349 1065 GKVQCMALDDNEEFLVIGTSDGR 1087 (1094)
Q Consensus 1065 ~~I~~l~~Spdg~~L~sgs~DG~ 1087 (1094)
-.|..+.|..+|..++-.+.|..
T Consensus 403 F~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 403 FNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred ceeeeEEecCCCcEEEEEcCCce
Confidence 47999999999999999998863
No 188
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=8e-13 Score=156.56 Aligned_cols=231 Identities=13% Similarity=0.067 Sum_probs=156.2
Q ss_pred CCCeEEEeCC-cceeecccCCCcEEEEEEeCC--EEEEEECC---CeEEEEecCCCcceeEEEecccCCCeEEEEEecCC
Q 001349 794 DSSADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSD---GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSG 867 (1094)
Q Consensus 794 dg~I~vWd~~-~~~~~~~~h~~~V~~l~fspd--~LaSgs~D---g~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg 867 (1094)
+..|.+||.+ .....+..|...+.+..|+|| .|+.++.+ ..|++||+.++....+..+.+|. ..++|+|||
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~---~~~~wSPDG 259 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN---GAPAFSPDG 259 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc---CceeECCCC
Confidence 4689999987 334556778889999999997 67666543 47999999988544555555554 468999999
Q ss_pred CEEEEEe-CCCcEEEE--ECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEe
Q 001349 868 EMLYSGS-LDKTARVW--SIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALV 944 (1094)
Q Consensus 868 ~~LaSgs-~DgtI~vW--di~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s 944 (1094)
+.|+.++ .+|.+.|| |+.++....+. .+...+.... |+|||+.++
T Consensus 260 ~~La~~~~~~g~~~Iy~~d~~~~~~~~lt--~~~~~~~~~~-------wSpDG~~i~----------------------- 307 (429)
T PRK01742 260 SRLAFASSKDGVLNIYVMGANGGTPSQLT--SGAGNNTEPS-------WSPDGQSIL----------------------- 307 (429)
T ss_pred CEEEEEEecCCcEEEEEEECCCCCeEeec--cCCCCcCCEE-------ECCCCCEEE-----------------------
Confidence 9888765 68876655 66666543332 2233333444 899998642
Q ss_pred CCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCC
Q 001349 945 QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLS 1024 (1094)
Q Consensus 945 ~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~ 1024 (1094)
+++..+|..++|++....... ..+ ++.. ....|+|++.+++..+.+ .+.+||+.++.......+ .
T Consensus 308 ----f~s~~~g~~~I~~~~~~~~~~-----~~l-~~~~--~~~~~SpDG~~ia~~~~~--~i~~~Dl~~g~~~~lt~~-~ 372 (429)
T PRK01742 308 ----FTSDRSGSPQVYRMSASGGGA-----SLV-GGRG--YSAQISADGKTLVMINGD--NVVKQDLTSGSTEVLSST-F 372 (429)
T ss_pred ----EEECCCCCceEEEEECCCCCe-----EEe-cCCC--CCccCCCCCCEEEEEcCC--CEEEEECCCCCeEEecCC-C
Confidence 333456677777654322111 111 2222 356789999998887765 466799988875432222 2
Q ss_pred CEEEEEEeCC--EEEEEEcCCeEEEEEC--CCCcEEEEecccCCcceEEEEEcCC
Q 001349 1025 EVRAMVVSSE--LVYLGCKGGTVEIWDQ--KRQIRIETLQTGTSGKVQCMALDDN 1075 (1094)
Q Consensus 1025 ~v~~l~~spd--~l~sgs~dg~I~vwd~--~t~~~~~~l~~~h~~~I~~l~~Spd 1075 (1094)
....+.|+|| +++.++.+|.+.+|++ .+|.....+ .+|.+.+...+|||-
T Consensus 373 ~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l-~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 373 LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARL-PGSDGQVKFPAWSPY 426 (429)
T ss_pred CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEc-cCCCCCCCCcccCCC
Confidence 3456789998 7888888888888875 357778888 478888999999984
No 189
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.50 E-value=1.3e-12 Score=136.87 Aligned_cols=243 Identities=18% Similarity=0.253 Sum_probs=169.6
Q ss_pred EEEEEEeCC--EEEEEECCCeEEEEecCCCcc----------eeEEEec-ccCCCeEEEEEe-------cCCCEEEEEeC
Q 001349 816 VLSIACFRD--KIFSGHSDGTIKVWTGRGSIL----------HLIQQIR-EHTKAVTGLAIL-------QSGEMLYSGSL 875 (1094)
Q Consensus 816 V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~----------~~~~~l~-~H~~~V~sv~fs-------pdg~~LaSgs~ 875 (1094)
...+.|+|| .|.+-+.|..+++|++...-. ....+++ .....|...+|- |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 346789998 899999999999998752100 0001111 123456777774 67789999999
Q ss_pred CCcEEEEECCCCceEEEE-ecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcC
Q 001349 876 DKTARVWSIGNEEIHCVQ-VHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQD 954 (1094)
Q Consensus 876 DgtI~vWdi~~~~~~~~~-~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~D 954 (1094)
|.-|++||.-+|++++.. ..++.+.+.... .++|+|||..| + ++..
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAh----sL~Fs~DGeql----------------------------f-aGyk 178 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAH----SLQFSPDGEQL----------------------------F-AGYK 178 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhhe----eEEecCCCCeE----------------------------e-eccc
Confidence 999999999999865533 233444433221 34588888753 3 4567
Q ss_pred CeEEEEEC-CCCceeEEeccc-eeecCCCCCeEEEEEeCCcc-EEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEE
Q 001349 955 GAIQEIDL-ATGTFATIQTGH-RKLLGKANPVHALQVHNGLV-YTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMV 1030 (1094)
Q Consensus 955 g~I~iwDl-~~~~~~~~~~~~-~~~~~h~~~V~sl~fs~~~~-~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~ 1030 (1094)
.+|++||+ +.|..-..+... ..-.+..+-|.+++|+|... .++.++.. ..+-||.-..+.++..+. |.+.|+.+.
T Consensus 179 rcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~-q~~giy~~~~~~pl~llggh~gGvThL~ 257 (406)
T KOG2919|consen 179 RCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYG-QRVGIYNDDGRRPLQLLGGHGGGVTHLQ 257 (406)
T ss_pred ceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeeccc-ceeeeEecCCCCceeeecccCCCeeeEE
Confidence 88999998 566543222211 11234457789999998766 56666554 588888888888888776 789999999
Q ss_pred EeCC--EEEEEE-cCCeEEEEECCC-CcEEEEecccCCc-ceEEE--EEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1031 VSSE--LVYLGC-KGGTVEIWDQKR-QIRIETLQTGTSG-KVQCM--ALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1031 ~spd--~l~sgs-~dg~I~vwd~~t-~~~~~~l~~~h~~-~I~~l--~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
|.++ .+++|+ .|-.|-.||++. ..++..+. .|.+ .-..| ...|+|++|++|+.||.|++||+
T Consensus 258 ~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~-rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdl 326 (406)
T KOG2919|consen 258 WCEDGNKLFSGARKDDKILCWDIRYSRDPVYALE-RHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDL 326 (406)
T ss_pred eccCcCeecccccCCCeEEEEeehhccchhhhhh-hhccCccceEEEecCCCCceeeccCCCccEEEEec
Confidence 9998 788887 478899999975 45666663 5544 33344 44689999999999999999997
No 190
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.49 E-value=6.9e-13 Score=146.67 Aligned_cols=206 Identities=19% Similarity=0.252 Sum_probs=155.6
Q ss_pred CEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCcccee
Q 001349 824 DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQN 903 (1094)
Q Consensus 824 d~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~ 903 (1094)
|.++.++.||.+.+-+-... ..+.+..|.+.|.+-.|+|||.-|+|++.||.|++|.-...- .........+|++
T Consensus 76 d~~~i~s~DGkf~il~k~~r---VE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGML--RStl~Q~~~~v~c 150 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSAR---VERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGML--RSTVVQNEESIRC 150 (737)
T ss_pred ceEEEEcCCceEEEecccch---hhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchH--HHHHhhcCceeEE
Confidence 48899999999999876543 556778999999999999999999999999999999865531 1122234567777
Q ss_pred eeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCC
Q 001349 904 LAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANP 983 (1094)
Q Consensus 904 v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~ 983 (1094)
++ |.|+++.+ ++ +..+++.+=-+.....+ ..+..|.+-
T Consensus 151 ~~-------W~p~S~~v---------------------------l~--c~g~h~~IKpL~~n~k~------i~WkAHDGi 188 (737)
T KOG1524|consen 151 AR-------WAPNSNSI---------------------------VF--CQGGHISIKPLAANSKI------IRWRAHDGL 188 (737)
T ss_pred EE-------ECCCCCce---------------------------EE--ecCCeEEEeecccccce------eEEeccCcE
Confidence 77 66666542 22 23344555444433333 467789999
Q ss_pred eEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCCE-EEEEEcCCeEEEEECCCCcEEEEeccc
Q 001349 984 VHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSEL-VYLGCKGGTVEIWDQKRQIRIETLQTG 1062 (1094)
Q Consensus 984 V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd~-l~sgs~dg~I~vwd~~t~~~~~~l~~~ 1062 (1094)
|.++.|++...++++++.|- ..++||........+-.|..+|++++|.|+. ++.||. ++.+ +...
T Consensus 189 iL~~~W~~~s~lI~sgGED~-kfKvWD~~G~~Lf~S~~~ey~ITSva~npd~~~~v~S~-nt~R------------~~~p 254 (737)
T KOG1524|consen 189 VLSLSWSTQSNIIASGGEDF-RFKIWDAQGANLFTSAAEEYAITSVAFNPEKDYLLWSY-NTAR------------FSSP 254 (737)
T ss_pred EEEeecCccccceeecCCce-eEEeecccCcccccCChhccceeeeeeccccceeeeee-eeee------------ecCC
Confidence 99999999999999999885 9999998655555555588999999999994 444443 3444 4445
Q ss_pred CCcceEEEEEcCCCCEEEEEeCCCcEEE
Q 001349 1063 TSGKVQCMALDDNEEFLVIGTSDGRIQA 1090 (1094)
Q Consensus 1063 h~~~I~~l~~Spdg~~L~sgs~DG~I~i 1090 (1094)
..+.|..++||+||..++.|+..|.+.+
T Consensus 255 ~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 255 RVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred CccceEEEEEcCCCceeeccccCceEEE
Confidence 6778999999999999999999998754
No 191
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=3.5e-13 Score=146.67 Aligned_cols=194 Identities=20% Similarity=0.292 Sum_probs=149.6
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCc
Q 001349 859 TGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYP 938 (1094)
Q Consensus 859 ~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v 938 (1094)
..++|+.+|..+++|+.||++|||++.+.. .......+...|.++. |+|||+.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~-t~l~e~~~~~eV~DL~-------FS~dgk~------------------- 200 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSML-TILEEIAHHAEVKDLD-------FSPDGKF------------------- 200 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcch-hhhhhHhhcCccccce-------eCCCCcE-------------------
Confidence 679999999999999999999999977653 3444556778899988 9999985
Q ss_pred eEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCc----cEEEEEECCCCEEEEEECCCC
Q 001349 939 KCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGL----VYTASTSLDGAAVKMWSTSNY 1014 (1094)
Q Consensus 939 ~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~----~~las~s~Dg~~I~iwd~~~~ 1014 (1094)
|++-+.| ..++|+..+|..+....+ .........+.|+.+. .++++.-.+++.|+.||+..+
T Consensus 201 ---------lasig~d-~~~VW~~~~g~~~a~~t~----~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w 266 (398)
T KOG0771|consen 201 ---------LASIGAD-SARVWSVNTGAALARKTP----FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLW 266 (398)
T ss_pred ---------EEEecCC-ceEEEEeccCchhhhcCC----cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeee
Confidence 5666777 889999999966543221 2223345566676444 344544445557887776543
Q ss_pred eE---E---EEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCC
Q 001349 1015 NM---V---GSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDG 1086 (1094)
Q Consensus 1015 ~~---~---~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG 1086 (1094)
.- . +.+.....|++++++.| +++.|+.||.|-|++..+.+.++..+..|...|+.+.|+||.+++++.+.|.
T Consensus 267 ~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~ 346 (398)
T KOG0771|consen 267 SGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDN 346 (398)
T ss_pred ccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCC
Confidence 22 1 11224568999999998 8999999999999999999999999899999999999999999999999998
Q ss_pred cEEEEeC
Q 001349 1087 RIQAWGL 1093 (1094)
Q Consensus 1087 ~I~iWdl 1093 (1094)
++.+..+
T Consensus 347 ~~~v~~l 353 (398)
T KOG0771|consen 347 EAAVTKL 353 (398)
T ss_pred ceeEEEE
Confidence 8887654
No 192
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=1.6e-12 Score=153.74 Aligned_cols=260 Identities=15% Similarity=0.243 Sum_probs=176.1
Q ss_pred CCCCeEEEeCCcceeecccCCCcEEEEEEeC--CEEEEEECCCeEEEEecCCCcceeEEEeccc---CCCeEEEEEec--
Q 001349 793 HDSSADFWNHRELVHVDSSENGKVLSIACFR--DKIFSGHSDGTIKVWTGRGSILHLIQQIREH---TKAVTGLAILQ-- 865 (1094)
Q Consensus 793 ~dg~I~vWd~~~~~~~~~~h~~~V~~l~fsp--d~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H---~~~V~sv~fsp-- 865 (1094)
.+..|..||.. ...+.......+.|+| +.+++++..-.|+|||.+.+ +.+..|..+ ...|+.+.+-.
T Consensus 1048 st~~i~~W~~~----~~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~--~~l~~F~n~~~~~t~Vs~l~liNe~ 1121 (1387)
T KOG1517|consen 1048 STNPIGNWDQK----FMTGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKG--RLLNGFDNGAFPDTRVSDLELINEQ 1121 (1387)
T ss_pred ccccccchHHH----HHhcCCCCCceeeecCCCceeEEcCCcceEEEEecccC--ceeccccCCCCCCCccceeeeeccc
Confidence 34456778865 2233344667788887 48888888889999999988 566666543 35688888875
Q ss_pred CCCEEEEEeCCCcEEEEECCCCc---eEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEE
Q 001349 866 SGEMLYSGSLDKTARVWSIGNEE---IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLA 942 (1094)
Q Consensus 866 dg~~LaSgs~DgtI~vWdi~~~~---~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~ 942 (1094)
|..++++|+.||.||||+--... .+.+... ..+.++. ..+.|.. .-+.
T Consensus 1122 D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw---~~Ls~~~-------~~~r~~~-------------------~v~d 1172 (1387)
T KOG1517|consen 1122 DDALLLTASSDGVIRIWKDYADKWKKPELVTAW---SSLSDQL-------PGARGTG-------------------LVVD 1172 (1387)
T ss_pred chhheeeeccCceEEEecccccccCCceeEEee---ccccccC-------ccCCCCC-------------------eeee
Confidence 56799999999999999743321 1111110 0011110 1112211 1122
Q ss_pred Ee--CCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEe-CCccEEEEEECCCCEEEEEECCCCe---E
Q 001349 943 LV--QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVH-NGLVYTASTSLDGAAVKMWSTSNYN---M 1016 (1094)
Q Consensus 943 ~s--~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs-~~~~~las~s~Dg~~I~iwd~~~~~---~ 1016 (1094)
|. .|++++++.-..|++||........... .+....|+++.-+ ..+..++.|..|| .|++||.+... .
T Consensus 1173 WqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP-----~~s~t~vTaLS~~~~~gn~i~AGfaDG-svRvyD~R~a~~ds~ 1246 (1387)
T KOG1517|consen 1173 WQQQSGHLLVTGDVRSIRIWDAHKEQVVADIP-----YGSSTLVTALSADLVHGNIIAAGFADG-SVRVYDRRMAPPDSL 1246 (1387)
T ss_pred hhhhCCeEEecCCeeEEEEEecccceeEeecc-----cCCCccceeecccccCCceEEEeecCC-ceEEeecccCCcccc
Confidence 22 4678888888999999998877664322 2345678888775 4568888888887 99999998643 3
Q ss_pred EEEec-CCCC--EEEEEEeCC---EEEEEEcCCeEEEEECCCCcEEEEec-ccCC--c-ceEEEEEcCCCCEEEEEeCCC
Q 001349 1017 VGSLP-TLSE--VRAMVVSSE---LVYLGCKGGTVEIWDQKRQIRIETLQ-TGTS--G-KVQCMALDDNEEFLVIGTSDG 1086 (1094)
Q Consensus 1017 ~~~~~-~~~~--v~~l~~spd---~l~sgs~dg~I~vwd~~t~~~~~~l~-~~h~--~-~I~~l~~Spdg~~L~sgs~DG 1086 (1094)
+...+ |... |..+.+.+. -+++|+.+|.|++||++.......+. ..|. | ..+++..+++...+++|+. +
T Consensus 1247 v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q 1325 (1387)
T KOG1517|consen 1247 VCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-Q 1325 (1387)
T ss_pred ceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-c
Confidence 44444 6555 888888875 49999999999999998742221111 1222 3 5999999999999999998 9
Q ss_pred cEEEEeCC
Q 001349 1087 RIQAWGLS 1094 (1094)
Q Consensus 1087 ~I~iWdls 1094 (1094)
.|+||++.
T Consensus 1326 ~ikIy~~~ 1333 (1387)
T KOG1517|consen 1326 LIKIYSLS 1333 (1387)
T ss_pred eEEEEecC
Confidence 99999974
No 193
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.48 E-value=1.6e-11 Score=140.78 Aligned_cols=229 Identities=13% Similarity=0.154 Sum_probs=149.9
Q ss_pred EEEEECCCeEEEEecCC-CcceeEEEecccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECC-CCceEEEEecccCccce
Q 001349 826 IFSGHSDGTIKVWTGRG-SILHLIQQIREHTKAVTGLAILQSGEMLYSGS-LDKTARVWSIG-NEEIHCVQVHDIKDQIQ 902 (1094)
Q Consensus 826 LaSgs~Dg~I~vWd~~t-~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs-~DgtI~vWdi~-~~~~~~~~~~~~~~~V~ 902 (1094)
+++...|+.|++||+.+ +....+..+. +.+....++++|++++|++++ .++.|.+|+++ ++.+.............
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~ 83 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT 83 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce
Confidence 34457799999999964 4445666664 446678899999999987765 47889999997 34433333322222233
Q ss_pred eeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCc-eeEEeccceeecCCC
Q 001349 903 NLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGT-FATIQTGHRKLLGKA 981 (1094)
Q Consensus 903 ~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~-~~~~~~~~~~~~~h~ 981 (1094)
. ++|+|+|+.+. ++...++.|.+||+.+.. ..... ..+ .+.
T Consensus 84 ~-------i~~~~~g~~l~---------------------------v~~~~~~~v~v~~~~~~g~~~~~~---~~~-~~~ 125 (330)
T PRK11028 84 H-------ISTDHQGRFLF---------------------------SASYNANCVSVSPLDKDGIPVAPI---QII-EGL 125 (330)
T ss_pred E-------EEECCCCCEEE---------------------------EEEcCCCeEEEEEECCCCCCCCce---eec-cCC
Confidence 3 44888887642 233347889999886422 11100 111 122
Q ss_pred CCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEE-------EecCCCCEEEEEEeCC--EEEEEEc-CCeEEEEECC
Q 001349 982 NPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVG-------SLPTLSEVRAMVVSSE--LVYLGCK-GGTVEIWDQK 1051 (1094)
Q Consensus 982 ~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~-------~~~~~~~v~~l~~spd--~l~sgs~-dg~I~vwd~~ 1051 (1094)
.....++++|++.++...+..++.|.+||+.+...+. ....+.....++|+|+ +++++.. +++|.+||+.
T Consensus 126 ~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~ 205 (330)
T PRK11028 126 EGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLK 205 (330)
T ss_pred CcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence 3467788999998887666655699999997632221 2223455778999999 7777765 8999999997
Q ss_pred C--Cc--EEEEecc--c---CCcceEEEEEcCCCCEEEEEeC-CCcEEEEeC
Q 001349 1052 R--QI--RIETLQT--G---TSGKVQCMALDDNEEFLVIGTS-DGRIQAWGL 1093 (1094)
Q Consensus 1052 t--~~--~~~~l~~--~---h~~~I~~l~~Spdg~~L~sgs~-DG~I~iWdl 1093 (1094)
. ++ .+..+.. . +......+.|+|||++++++.. +++|.+|++
T Consensus 206 ~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i 257 (330)
T PRK11028 206 DPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSV 257 (330)
T ss_pred CCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEE
Confidence 3 32 3333321 0 1123346899999999998864 789999986
No 194
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.47 E-value=2.1e-13 Score=152.73 Aligned_cols=141 Identities=17% Similarity=0.213 Sum_probs=113.3
Q ss_pred cccccccCcEEEEeeCCCCeEEEeCC---------cceeecccCCCcEEEEEEeC---CEEEEEECCCeEEEEecCCCcc
Q 001349 778 YSPLAFEMVKVLSNGHDSSADFWNHR---------ELVHVDSSENGKVLSIACFR---DKIFSGHSDGTIKVWTGRGSIL 845 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg~I~vWd~~---------~~~~~~~~h~~~V~~l~fsp---d~LaSgs~Dg~I~vWd~~t~~~ 845 (1094)
+.|-.||..+++.++.||.|++|.+. +...++..|...|+++.|+| |.|+++++|-+|++||+.++
T Consensus 633 l~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~-- 710 (1012)
T KOG1445|consen 633 LHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANA-- 710 (1012)
T ss_pred cccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhh--
Confidence 44556789999999999999999875 45577889999999999999 69999999999999999998
Q ss_pred eeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEe
Q 001349 846 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLR 925 (1094)
Q Consensus 846 ~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~ 925 (1094)
+....+.+|++.|.+++|||||+.++|.+.||+|+||+.+.++..... .++++.. ....+.|..||+++++.+.
T Consensus 711 ~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~E---g~gpvgt---RgARi~wacdgr~viv~Gf 784 (1012)
T KOG1445|consen 711 KLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYE---GKGPVGT---RGARILWACDGRIVIVVGF 784 (1012)
T ss_pred hhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCcccc---CCCCccC---cceeEEEEecCcEEEEecc
Confidence 677788999999999999999999999999999999999887522222 2223221 1223447778887655544
Q ss_pred C
Q 001349 926 N 926 (1094)
Q Consensus 926 ~ 926 (1094)
+
T Consensus 785 d 785 (1012)
T KOG1445|consen 785 D 785 (1012)
T ss_pred c
Confidence 4
No 195
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=2.6e-12 Score=136.00 Aligned_cols=193 Identities=17% Similarity=0.209 Sum_probs=144.8
Q ss_pred CEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEec--CCCEEEEEeCCCcEEEEECCCCceEEEEec-ccC-c
Q 001349 824 DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQ--SGEMLYSGSLDKTARVWSIGNEEIHCVQVH-DIK-D 899 (1094)
Q Consensus 824 d~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fsp--dg~~LaSgs~DgtI~vWdi~~~~~~~~~~~-~~~-~ 899 (1094)
..++++...|+|++||..++ ..+..+++|...++.+.|.. .+..+.+|+.||+|++||++.......... .+. .
T Consensus 41 ~~vav~lSngsv~lyd~~tg--~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~ 118 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTG--QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT 118 (376)
T ss_pred eeEEEEecCCeEEEEeccch--hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC
Confidence 47899999999999999998 78999999999999999987 577899999999999999998642111111 111 1
Q ss_pred cceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEE----EcCCeEEEEECCCCce-eEEeccc
Q 001349 900 QIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCG----CQDGAIQEIDLATGTF-ATIQTGH 974 (1094)
Q Consensus 900 ~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sg----s~Dg~I~iwDl~~~~~-~~~~~~~ 974 (1094)
+..+++ ....++ .+++| ..|-.|.+||++..+. +.
T Consensus 119 ~f~~ld-------~nck~~----------------------------ii~~GtE~~~s~A~v~lwDvR~~qq~l~----- 158 (376)
T KOG1188|consen 119 PFICLD-------LNCKKN----------------------------IIACGTELTRSDASVVLWDVRSEQQLLR----- 158 (376)
T ss_pred cceEee-------ccCcCC----------------------------eEEeccccccCceEEEEEEeccccchhh-----
Confidence 112211 001111 23333 2466799999998775 32
Q ss_pred eeecCCCCCeEEEEEeC-CccEEEEEECCCCEEEEEECCCCe----EEEEecCCCCEEEEEEeCC---EEEEEEcCCeEE
Q 001349 975 RKLLGKANPVHALQVHN-GLVYTASTSLDGAAVKMWSTSNYN----MVGSLPTLSEVRAMVVSSE---LVYLGCKGGTVE 1046 (1094)
Q Consensus 975 ~~~~~h~~~V~sl~fs~-~~~~las~s~Dg~~I~iwd~~~~~----~~~~~~~~~~v~~l~~spd---~l~sgs~dg~I~ 1046 (1094)
.-...|...|+++.|+| +...+++||.|| .|.+||+.... +...+.+.+.|..+.|..+ .+++-+..++..
T Consensus 159 ~~~eSH~DDVT~lrFHP~~pnlLlSGSvDG-LvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~ 237 (376)
T KOG1188|consen 159 QLNESHNDDVTQLRFHPSDPNLLLSGSVDG-LVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFA 237 (376)
T ss_pred hhhhhccCcceeEEecCCCCCeEEeecccc-eEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCcee
Confidence 23457999999999997 456889999997 99999997542 4566668888999999887 699999999999
Q ss_pred EEECCCCcEEEEe
Q 001349 1047 IWDQKRQIRIETL 1059 (1094)
Q Consensus 1047 vwd~~t~~~~~~l 1059 (1094)
+|+++.+.....+
T Consensus 238 ~~ele~~~~~~~~ 250 (376)
T KOG1188|consen 238 IYELEDGSEETWL 250 (376)
T ss_pred EEEccCCChhhcc
Confidence 9999988765554
No 196
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.46 E-value=7.7e-14 Score=161.06 Aligned_cols=238 Identities=18% Similarity=0.228 Sum_probs=176.1
Q ss_pred eeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 001349 806 VHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWS 883 (1094)
Q Consensus 806 ~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWd 883 (1094)
+..+.+|...|+|+.|... ++++|+.|..|+||...+. .++....||.+.|+.++.+.+..+++++|.|..|++|.
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~--~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA--RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccch--hhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 4456799999999999875 9999999999999999998 89999999999999999999999999999999999999
Q ss_pred CCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECC
Q 001349 884 IGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLA 963 (1094)
Q Consensus 884 i~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~ 963 (1094)
+.++.. .-....|.+.|++++ |+| ..+.+.||++++||.+
T Consensus 261 l~~~~p-vsvLrghtgavtaia-------fsP--------------------------------~~sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 261 LPDGAP-VSVLRGHTGAVTAIA-------FSP--------------------------------RASSSDDGTCRIWDAR 300 (1113)
T ss_pred cCCCch-HHHHhccccceeeec-------cCc--------------------------------cccCCCCCceEecccc
Confidence 998742 111223455555555 433 2256789999999988
Q ss_pred CCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC---EEEEEE
Q 001349 964 TGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE---LVYLGC 1040 (1094)
Q Consensus 964 ~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd---~l~sgs 1040 (1094)
-.-.+. .+....+.+ ...+.++.|..++.-+.+++.|+ .-..|.+..-.. +...+.-+..+.| +.+++-
T Consensus 301 ~~~~~y-~prp~~~~~-~~~~~s~~~~~~~~~f~Tgs~d~-ea~n~e~~~l~~-----~~~~lif~t~ssd~~~~~~~ar 372 (1113)
T KOG0644|consen 301 LEPRIY-VPRPLKFTE-KDLVDSILFENNGDRFLTGSRDG-EARNHEFEQLAW-----RSNLLIFVTRSSDLSSIVVTAR 372 (1113)
T ss_pred cccccc-CCCCCCccc-ccceeeeeccccccccccccCCc-ccccchhhHhhh-----hccceEEEeccccccccceeee
Confidence 211111 111111222 25677888888888889998886 666665532100 1111112222222 566777
Q ss_pred cCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCE-EEEEeCCCcEEEEeCC
Q 001349 1041 KGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEF-LVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1041 ~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~-L~sgs~DG~I~iWdls 1094 (1094)
.+..+.+|++.+|...+.+ .+|...+..+.++|-+.. ..+++.||.+.|||+.
T Consensus 373 ~~~~~~vwnl~~g~l~H~l-~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~ 426 (1113)
T KOG0644|consen 373 NDHRLCVWNLYTGQLLHNL-MGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIW 426 (1113)
T ss_pred eeeEeeeeecccchhhhhh-cccccceeeeeecCCCcHhhhhccCCCceEeeecc
Confidence 7889999999999999988 699999999999997654 4589999999999973
No 197
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=3.7e-13 Score=147.89 Aligned_cols=287 Identities=15% Similarity=0.146 Sum_probs=202.6
Q ss_pred HHhhhccccccccccCcEEEEeeCCCCeEEEeCC---cceeecccCCCcEEEEEEeCC----EEEEEECCCeEEEEecC-
Q 001349 770 KGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFRD----KIFSGHSDGTIKVWTGR- 841 (1094)
Q Consensus 770 ~~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~---~~~~~~~~h~~~V~~l~fspd----~LaSgs~Dg~I~vWd~~- 841 (1094)
..|...++..-|...|..+++||.|..|.+||+. .......+|...|..-.|.|. .+++++.||.|++=.+.
T Consensus 139 ~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~ 218 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILE 218 (559)
T ss_pred cCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeecc
Confidence 3444555566677789999999999999999997 344556689889988888873 89999999999998754
Q ss_pred CCcceeEEEecccCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCceEEEEe-cccCccceeeeecCceEEEeeCCCe
Q 001349 842 GSILHLIQQIREHTKAVTGLAILQS-GEMLYSGSLDKTARVWSIGNEEIHCVQV-HDIKDQIQNLAVSNSILCFIPQGAG 919 (1094)
Q Consensus 842 t~~~~~~~~l~~H~~~V~sv~fspd-g~~LaSgs~DgtI~vWdi~~~~~~~~~~-~~~~~~V~~v~~~~~~~~fspdg~~ 919 (1094)
++...-...+..|.+.|..++.-|+ ..-|.|++.|+.+.-.|++++....... .....+
T Consensus 219 t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~------------------- 279 (559)
T KOG1334|consen 219 TGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEK------------------- 279 (559)
T ss_pred ccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCc-------------------
Confidence 3332335567789999999999995 5689999999999999998864111110 000000
Q ss_pred EEEEEeCCeEEEEcCCCCceEEEEeC---CEEEEEEcCCeEEEEECCCCcee------EEeccceeecCCCCCeEEEEEe
Q 001349 920 IKVHLRNGKTKLLNSSKYPKCLALVQ---GKVYCGCQDGAIQEIDLATGTFA------TIQTGHRKLLGKANPVHALQVH 990 (1094)
Q Consensus 920 l~~~~~~g~i~l~~~~~~v~~l~~s~---~~l~sgs~Dg~I~iwDl~~~~~~------~~~~~~~~~~~h~~~V~sl~fs 990 (1094)
..+ ....++..| +.+++|+.|-.+++||.+.-... ..+.++.-.......|++++|+
T Consensus 280 -------~~v-------~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ys 345 (559)
T KOG1334|consen 280 -------ERV-------GLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYS 345 (559)
T ss_pred -------cce-------eeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEec
Confidence 000 112333332 46899999999999998753322 1122222222334579999998
Q ss_pred -CCccEEEEEECCCCEEEEEECCC--C----------eEEEE-ec-C--CCCEEEEEEeC-C--EEEEEEcCCeEEEEEC
Q 001349 991 -NGLVYTASTSLDGAAVKMWSTSN--Y----------NMVGS-LP-T--LSEVRAMVVSS-E--LVYLGCKGGTVEIWDQ 1050 (1094)
Q Consensus 991 -~~~~~las~s~Dg~~I~iwd~~~--~----------~~~~~-~~-~--~~~v~~l~~sp-d--~l~sgs~dg~I~vwd~ 1050 (1094)
..+.++++.+ |. .|+++.-.. | ..+.. ++ | ...|.++-|-+ . |+++||+=|.|.||+.
T Consensus 346 h~~sElLaSYn-De-~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K 423 (559)
T KOG1334|consen 346 HDGSELLASYN-DE-DIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDK 423 (559)
T ss_pred CCccceeeeec-cc-ceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEec
Confidence 5556666654 43 688885432 2 12222 33 2 24477777765 2 9999999999999999
Q ss_pred CCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1051 KRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1051 ~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
.+++.+..+. +-...|+|+.-+|--..|+++|-|.-|+||-
T Consensus 424 ~t~eii~~Me-gDr~VVNCLEpHP~~PvLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 424 KTGEIIRFME-GDRHVVNCLEPHPHLPVLASSGIDHDVKIWT 464 (559)
T ss_pred chhHHHHHhh-cccceEeccCCCCCCchhhccCCccceeeec
Confidence 9999988885 4444899999999999999999999999995
No 198
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=4.8e-12 Score=149.91 Aligned_cols=210 Identities=12% Similarity=0.051 Sum_probs=142.3
Q ss_pred CCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCC---CcEEEEECCCCceEEEEecccCccceeeeecC
Q 001349 832 DGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD---KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSN 908 (1094)
Q Consensus 832 Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~D---gtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~ 908 (1094)
+..|.+||..+.. .+.+..|...+.+..|||||+.|+.++.+ ..|++||+.+++...+... .......
T Consensus 183 ~~~i~i~d~dg~~---~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~--~g~~~~~---- 253 (429)
T PRK01742 183 PYEVRVADYDGFN---QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASF--RGHNGAP---- 253 (429)
T ss_pred eEEEEEECCCCCC---ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecC--CCccCce----
Confidence 4789999998762 45567788899999999999999988754 3699999998764444322 2222233
Q ss_pred ceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeE--EEEECCCCceeEEeccceeecCCCCCeEE
Q 001349 909 SILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAI--QEIDLATGTFATIQTGHRKLLGKANPVHA 986 (1094)
Q Consensus 909 ~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I--~iwDl~~~~~~~~~~~~~~~~~h~~~V~s 986 (1094)
.|+|||+.++.. .+.+|.+ .+||+.++... .+..+...+..
T Consensus 254 ---~wSPDG~~La~~---------------------------~~~~g~~~Iy~~d~~~~~~~-------~lt~~~~~~~~ 296 (429)
T PRK01742 254 ---AFSPDGSRLAFA---------------------------SSKDGVLNIYVMGANGGTPS-------QLTSGAGNNTE 296 (429)
T ss_pred ---eECCCCCEEEEE---------------------------EecCCcEEEEEEECCCCCeE-------eeccCCCCcCC
Confidence 499999875432 2345544 45576666543 33445566788
Q ss_pred EEEeCCccEEEEEECCCCEEEEEECCC-CeEEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccC
Q 001349 987 LQVHNGLVYTASTSLDGAAVKMWSTSN-YNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGT 1063 (1094)
Q Consensus 987 l~fs~~~~~las~s~Dg~~I~iwd~~~-~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h 1063 (1094)
..|+||+..++..+..++...||++.. +.....+.+.. ....|+|| +++.++.++ +.+||+.+++..... ..+
T Consensus 297 ~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt-~~~ 372 (429)
T PRK01742 297 PSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLS-STF 372 (429)
T ss_pred EEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEec-CCC
Confidence 999999998776664334778887643 22223333332 45778988 676666655 566999988754332 222
Q ss_pred CcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1064 SGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1064 ~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
....+.|+|||++|+.++.+|.+.+|++
T Consensus 373 --~~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 373 --LDESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred --CCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 3456789999999999999998888864
No 199
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=1.2e-12 Score=142.57 Aligned_cols=201 Identities=19% Similarity=0.259 Sum_probs=139.6
Q ss_pred EEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEe
Q 001349 817 LSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQV 894 (1094)
Q Consensus 817 ~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~ 894 (1094)
.+++|+++ .+++|+.||++|||++... ..+.....|.+.|.+++|+|||++|++.+.| ..+||++++|.......
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~--~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM--LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc--hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence 67788876 9999999999999998776 5677778899999999999999999999999 89999999983111111
Q ss_pred -cccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEecc
Q 001349 895 -HDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTG 973 (1094)
Q Consensus 895 -~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~ 973 (1094)
.+.+.....+. |+.|+.. ..+++ .+.....+.|+.||+.....-.....
T Consensus 225 ~~~k~~~~~~cR-------F~~d~~~-------~~l~l----------------aa~~~~~~~v~~~~~~~w~~~~~l~~ 274 (398)
T KOG0771|consen 225 PFSKDEMFSSCR-------FSVDNAQ-------ETLRL----------------AASQFPGGGVRLCDISLWSGSNFLRL 274 (398)
T ss_pred Ccccchhhhhce-------ecccCCC-------ceEEE----------------EEecCCCCceeEEEeeeeccccccch
Confidence 11122222222 5555421 00000 11112223344444332211000011
Q ss_pred ceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec--CCCCEEEEEEeCC--EEEEEEcCCeEEEEE
Q 001349 974 HRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP--TLSEVRAMVVSSE--LVYLGCKGGTVEIWD 1049 (1094)
Q Consensus 974 ~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~--~~~~v~~l~~spd--~l~sgs~dg~I~vwd 1049 (1094)
.+.......|++++.+++|.+++.|+.|| .|-|++..+.+.++.++ |...|+.+.|+|| ++++.+.+..+.|..
T Consensus 275 -~~~~~~~~siSsl~VS~dGkf~AlGT~dG-sVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~ 352 (398)
T KOG0771|consen 275 -RKKIKRFKSISSLAVSDDGKFLALGTMDG-SVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTK 352 (398)
T ss_pred -hhhhhccCcceeEEEcCCCcEEEEeccCC-cEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEE
Confidence 12222335799999999999999999997 99999999998888877 7889999999999 788888888888876
Q ss_pred CCC
Q 001349 1050 QKR 1052 (1094)
Q Consensus 1050 ~~t 1052 (1094)
+.-
T Consensus 353 l~v 355 (398)
T KOG0771|consen 353 LAV 355 (398)
T ss_pred Eee
Confidence 543
No 200
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.44 E-value=1.3e-10 Score=124.56 Aligned_cols=226 Identities=10% Similarity=0.110 Sum_probs=156.9
Q ss_pred ccccCcEEEEeeCCCCeEEEeCCcceeec--ccCCCcEEEEEEeCCEEEEEECCC--eEEEEecCCCcceeEEEecccCC
Q 001349 781 LAFEMVKVLSNGHDSSADFWNHRELVHVD--SSENGKVLSIACFRDKIFSGHSDG--TIKVWTGRGSILHLIQQIREHTK 856 (1094)
Q Consensus 781 ~~~d~~~l~s~s~dg~I~vWd~~~~~~~~--~~h~~~V~~l~fspd~LaSgs~Dg--~I~vWd~~t~~~~~~~~l~~H~~ 856 (1094)
+..+...+..|+.||. ++|+........ ......|..+-|+..++|..+.+. .+++.+++.+ ..+..+. ...
T Consensus 13 ~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~--~~ICe~~-fpt 88 (391)
T KOG2110|consen 13 FNQDSTLLSVGSKDGY-KIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKK--TTICEIF-FPT 88 (391)
T ss_pred eccceeEEEccCCCce-eEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccC--ceEEEEe-cCC
Confidence 4445666777777764 567766322211 122346778889999766666544 4899999887 4444443 456
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEECCCCc-eEEEEec-ccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC
Q 001349 857 AVTGLAILQSGEMLYSGSLDKTARVWSIGNEE-IHCVQVH-DIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS 934 (1094)
Q Consensus 857 ~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~-~~~~~~~-~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~ 934 (1094)
.|.+|.++. +.|+++=.+ .|+|||+++.+ ++.+... ++...+.++. +++.+.+++.-
T Consensus 89 ~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS-------~n~~n~ylAyp----------- 147 (391)
T KOG2110|consen 89 SILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALS-------PNNANCYLAYP----------- 147 (391)
T ss_pred ceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeec-------cCCCCceEEec-----------
Confidence 799999964 456555544 49999999864 2222222 1222222222 22222233211
Q ss_pred CCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCC
Q 001349 935 SKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNY 1014 (1094)
Q Consensus 935 ~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~ 1014 (1094)
.....|.|.+||..+-+.. ..+..|.+++-+++|+++|.++|+++..|..||+|.+.+|
T Consensus 148 ---------------~s~t~GdV~l~d~~nl~~v------~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G 206 (391)
T KOG2110|consen 148 ---------------GSTTSGDVVLFDTINLQPV------NTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG 206 (391)
T ss_pred ---------------CCCCCceEEEEEcccceee------eEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc
Confidence 1223689999999887776 5677899999999999999999999999989999999999
Q ss_pred eEEEEecC---CCCEEEEEEeCC--EEEEEEcCCeEEEEECCC
Q 001349 1015 NMVGSLPT---LSEVRAMVVSSE--LVYLGCKGGTVEIWDQKR 1052 (1094)
Q Consensus 1015 ~~~~~~~~---~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t 1052 (1094)
+.+..|+. ...|.+++|+++ ++.+.|..++|+||.+..
T Consensus 207 ~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 207 QKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred cEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 99999984 456899999999 888889999999998653
No 201
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.44 E-value=7.8e-12 Score=129.44 Aligned_cols=242 Identities=16% Similarity=0.180 Sum_probs=168.9
Q ss_pred CcEEEEEEeC----C-EEEEEEC----CCeEEEEecC--CCcceeEEEecccCCCeEEEEEecCC-----CEEEEEeCCC
Q 001349 814 GKVLSIACFR----D-KIFSGHS----DGTIKVWTGR--GSILHLIQQIREHTKAVTGLAILQSG-----EMLYSGSLDK 877 (1094)
Q Consensus 814 ~~V~~l~fsp----d-~LaSgs~----Dg~I~vWd~~--t~~~~~~~~l~~H~~~V~sv~fspdg-----~~LaSgs~Dg 877 (1094)
-.+.++.|+. + +|+.|+. .+.|.|-.+. +++.....+ ..|.-+++.+-|.|+. .+|||.|+
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~-fd~~YP~tK~~wiPd~~g~~pdlLATs~D-- 121 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN-FDHPYPVTKLMWIPDSKGVYPDLLATSSD-- 121 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC-CCCCCCccceEecCCccccCcchhhcccC--
Confidence 4567888883 2 8888873 4666665443 443222222 3689999999999975 35666553
Q ss_pred cEEEEECCCCc--eEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEe---CCEEEEEE
Q 001349 878 TARVWSIGNEE--IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALV---QGKVYCGC 952 (1094)
Q Consensus 878 tI~vWdi~~~~--~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s---~~~l~sgs 952 (1094)
.+|+|.+...+ ..+.... +.+- --.....++++.|+ ++.|.+.+
T Consensus 122 ~LRlWri~~ee~~~~~~~~L------------------~~~k-------------ns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 122 FLRLWRIGDEESRVELQSVL------------------NNNK-------------NSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred eEEEEeccCcCCceehhhhh------------------ccCc-------------ccccCCcccccccccCCcceeEeec
Confidence 69999998532 1111100 0000 00112344455554 56799999
Q ss_pred cCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCC-ccEEEEEECCCCEEEEEECCCCeEEEEec---C-CCCEE
Q 001349 953 QDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG-LVYTASTSLDGAAVKMWSTSNYNMVGSLP---T-LSEVR 1027 (1094)
Q Consensus 953 ~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~-~~~las~s~Dg~~I~iwd~~~~~~~~~~~---~-~~~v~ 1027 (1094)
-|-+..+||+.++..... ...+..|.+.|+.++|..+ ...+++.+.|| .||+||++....-..+. . ..+..
T Consensus 171 iDTTCTiWdie~~~~~~v---kTQLIAHDKEV~DIaf~~~s~~~FASvgaDG-SvRmFDLR~leHSTIIYE~p~~~~pLl 246 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTV---KTQLIAHDKEVYDIAFLKGSRDVFASVGADG-SVRMFDLRSLEHSTIIYEDPSPSTPLL 246 (364)
T ss_pred ccCeEEEEEEeeccccce---eeEEEecCcceeEEEeccCccceEEEecCCC-cEEEEEecccccceEEecCCCCCCcce
Confidence 999999999999733111 1467899999999999864 45788999997 99999999765443333 2 46678
Q ss_pred EEEEeCC---EEEEEE-cCCeEEEEECCCC-cEEEEecccCCcceEEEEEcCCC-CEEEEEeCCCcEEEEeCC
Q 001349 1028 AMVVSSE---LVYLGC-KGGTVEIWDQKRQ-IRIETLQTGTSGKVQCMALDDNE-EFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1028 ~l~~spd---~l~sgs-~dg~I~vwd~~t~-~~~~~l~~~h~~~I~~l~~Spdg-~~L~sgs~DG~I~iWdls 1094 (1094)
.++|++. ++++-. ....|.|.|++.. .++..+ .+|.+.|++++|.|.. ..|+|+|+|..+.|||+.
T Consensus 247 RLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L-~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~ 318 (364)
T KOG0290|consen 247 RLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARL-RNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQ 318 (364)
T ss_pred eeccCcCCchHHhhhhcCCceEEEEEecCCCcceehh-hcCcccccceEecCCCCceeeecCCcceEEEEecc
Confidence 8888764 677654 4467999999875 466777 6999999999999965 689999999999999984
No 202
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=3.9e-11 Score=141.33 Aligned_cols=267 Identities=16% Similarity=0.218 Sum_probs=186.2
Q ss_pred EEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCC---CEEEEEeCCCcEEEEECCCCceEEEE
Q 001349 818 SIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSG---EMLYSGSLDKTARVWSIGNEEIHCVQ 893 (1094)
Q Consensus 818 ~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg---~~LaSgs~DgtI~vWdi~~~~~~~~~ 893 (1094)
.-.|++| ..+.+..+..|.||...|+ .++..+.+|..+++++.+.|.. .++++++.||+|++||...+. .+.
T Consensus 21 ~avfSnD~k~l~~~~~~~V~VyS~~Tg--~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~--Llk 96 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLCTGNFVKVYSTATG--ECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGE--LLK 96 (792)
T ss_pred ccccccCCcEEEEeeCCEEEEEecchH--hhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcE--EEE
Confidence 3457777 6666677789999999999 8899999999999999998853 477899999999999999885 333
Q ss_pred ecccCccceeeeecCc-----eEEE-eeCCCeEEE-EEe--CCeEEEEc-------------CCCCceEEEEeC-CEEEE
Q 001349 894 VHDIKDQIQNLAVSNS-----ILCF-IPQGAGIKV-HLR--NGKTKLLN-------------SSKYPKCLALVQ-GKVYC 950 (1094)
Q Consensus 894 ~~~~~~~V~~v~~~~~-----~~~f-spdg~~l~~-~~~--~g~i~l~~-------------~~~~v~~l~~s~-~~l~s 950 (1094)
......++..+...+. ...+ +-+...+.. ... .+...-+. ......++.+.+ +.+..
T Consensus 97 t~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~ 176 (792)
T KOG1963|consen 97 TFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKG 176 (792)
T ss_pred EEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEE
Confidence 3333344444332111 0011 111111111 000 01111000 011245666655 55777
Q ss_pred EEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCC--C--eEEEEec-CCCC
Q 001349 951 GCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSN--Y--NMVGSLP-TLSE 1025 (1094)
Q Consensus 951 gs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~--~--~~~~~~~-~~~~ 1025 (1094)
...+..+++|+...+.. .......-..|...+++.++||++.+++++..|| .|.+|.--. . ...+.+. |+..
T Consensus 177 i~~~~~~~~~~v~~~~~--~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dG-rI~vw~d~~~~~~~~t~t~lHWH~~~ 253 (792)
T KOG1963|consen 177 IVHMCKIHIYFVPKHTK--HTSSRDITVHHTFNITCVALSPNERYLAAGDSDG-RILVWRDFGSSDDSETCTLLHWHHDE 253 (792)
T ss_pred EEEeeeEEEEEecccce--eeccchhhhhhcccceeEEeccccceEEEeccCC-cEEEEeccccccccccceEEEecccc
Confidence 77888899999887662 1222223345777899999999999999999997 799996432 1 1233344 8899
Q ss_pred EEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1026 VRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1026 v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
|.+++|+++ ++++|+..|.+-+|.+.+++ +.|...-.++|..+.+|||+.+.+....|+.|.+-..
T Consensus 254 V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~ 321 (792)
T KOG1963|consen 254 VNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKA 321 (792)
T ss_pred cceeEEecCCceEeecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEec
Confidence 999999999 89999999999999999998 3443456779999999999999999999999987653
No 203
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.41 E-value=4.2e-12 Score=131.20 Aligned_cols=230 Identities=16% Similarity=0.178 Sum_probs=154.6
Q ss_pred CCCeEEEEecCCCcce-eEEEecccCCCeEEEEEec-CCCEEEEEeCC-------CcEEEEECCCCceEEEEecccCccc
Q 001349 831 SDGTIKVWTGRGSILH-LIQQIREHTKAVTGLAILQ-SGEMLYSGSLD-------KTARVWSIGNEEIHCVQVHDIKDQI 901 (1094)
Q Consensus 831 ~Dg~I~vWd~~t~~~~-~~~~l~~H~~~V~sv~fsp-dg~~LaSgs~D-------gtI~vWdi~~~~~~~~~~~~~~~~V 901 (1094)
.|+.|.+-++....-. .-..|..|.+.|+.++-+| +...|+|+..| ..+-||.+...... ....+.
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~-----S~~~tl 112 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQ-----SNSSTL 112 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCc-----cccchh
Confidence 4677888776643212 2345667889999999999 56677776542 23678888653211 000001
Q ss_pred eeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCC--EEEEEEcCCeEEEEECCCCcee-EEeccceeec
Q 001349 902 QNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQG--KVYCGCQDGAIQEIDLATGTFA-TIQTGHRKLL 978 (1094)
Q Consensus 902 ~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~--~l~sgs~Dg~I~iwDl~~~~~~-~~~~~~~~~~ 978 (1094)
..++ -.+. ..-+.+.|+.|.|+ ++++- .|..|.+|++..+..+ ..... ..-.
T Consensus 113 E~v~-------~Ldt----------------eavg~i~cvew~Pns~klasm-~dn~i~l~~l~ess~~vaev~s-s~s~ 167 (370)
T KOG1007|consen 113 ECVA-------SLDT----------------EAVGKINCVEWEPNSDKLASM-DDNNIVLWSLDESSKIVAEVLS-SESA 167 (370)
T ss_pred hHhh-------cCCH----------------HHhCceeeEEEcCCCCeeEEe-ccCceEEEEcccCcchheeecc-cccc
Confidence 1110 0000 00123445555442 24433 4889999999887663 21111 1122
Q ss_pred CCCCCeEEEEEeC--CccEEEEEECCCCEEEEEECCCCeEEEEec--CCCCEEEEEEeCC---EEEEEEcCCeEEEEECC
Q 001349 979 GKANPVHALQVHN--GLVYTASTSLDGAAVKMWSTSNYNMVGSLP--TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQK 1051 (1094)
Q Consensus 979 ~h~~~V~sl~fs~--~~~~las~s~Dg~~I~iwd~~~~~~~~~~~--~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~ 1051 (1094)
+|....++-+|+| ++..+++.+ ++++..||+++......+. |+..|..+.|+|+ +++++++||.|+|||.+
T Consensus 168 e~~~~ftsg~WspHHdgnqv~tt~--d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R 245 (370)
T KOG1007|consen 168 EMRHSFTSGAWSPHHDGNQVATTS--DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTR 245 (370)
T ss_pred cccceecccccCCCCccceEEEeC--CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEecc
Confidence 3556677888876 566666654 3599999999988888887 7888999999999 79999999999999987
Q ss_pred CCc-EEEEecccCCcceEEEEEcCCC-CEEEEEeCCCcEEEEeC
Q 001349 1052 RQI-RIETLQTGTSGKVQCMALDDNE-EFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1052 t~~-~~~~l~~~h~~~I~~l~~Spdg-~~L~sgs~DG~I~iWdl 1093 (1094)
..+ ++..+ .+|...|+++.|+|.. +++++||+|..|.+|..
T Consensus 246 ~tk~pv~el-~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca 288 (370)
T KOG1007|consen 246 KTKFPVQEL-PGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCA 288 (370)
T ss_pred CCCcccccc-CCCceEEEEEEecCccceEEEecCCCceeEEEec
Confidence 654 67777 6999999999999954 67889999999999853
No 204
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.39 E-value=2.9e-11 Score=145.73 Aligned_cols=273 Identities=15% Similarity=0.148 Sum_probs=172.0
Q ss_pred cccccCcEEEEeeCCCCeEEEeCCcc---------eeecccCCCcEEEEEEeC--CEEEEEECCCeEEEEecCCCc----
Q 001349 780 PLAFEMVKVLSNGHDSSADFWNHREL---------VHVDSSENGKVLSIACFR--DKIFSGHSDGTIKVWTGRGSI---- 844 (1094)
Q Consensus 780 ~~~~d~~~l~s~s~dg~I~vWd~~~~---------~~~~~~h~~~V~~l~fsp--d~LaSgs~Dg~I~vWd~~t~~---- 844 (1094)
....++.+++|||.||+|++|+..+. ..++....+.+.++.+.+ +.+|.|+.||.|++.+++...
T Consensus 1056 ~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~ 1135 (1431)
T KOG1240|consen 1056 VSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKR 1135 (1431)
T ss_pred ecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccc
Confidence 34446689999999999999998621 122222356677766655 599999999999999887521
Q ss_pred -ceeEEEecccC-CCe-EEEEEec-CCC-EEEEEeCCCcEEEEECCCCc-eEEEEecccCccceeeeecCceEEEeeCCC
Q 001349 845 -LHLIQQIREHT-KAV-TGLAILQ-SGE-MLYSGSLDKTARVWSIGNEE-IHCVQVHDIKDQIQNLAVSNSILCFIPQGA 918 (1094)
Q Consensus 845 -~~~~~~l~~H~-~~V-~sv~fsp-dg~-~LaSgs~DgtI~vWdi~~~~-~~~~~~~~~~~~V~~v~~~~~~~~fspdg~ 918 (1094)
..+.+....+. +.| ..-+|.. ++. .++.+..-+.|..||++... ....+.....+.|++++ .+|.+.
T Consensus 1136 ~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~-------idp~~~ 1208 (1431)
T KOG1240|consen 1136 VATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIV-------IDPWCN 1208 (1431)
T ss_pred eeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEE-------ecCCce
Confidence 11222222222 233 3334433 333 77888888999999998753 11222222233444444 444443
Q ss_pred eEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeC---CccE
Q 001349 919 GIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN---GLVY 995 (1094)
Q Consensus 919 ~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~---~~~~ 995 (1094)
.+++|+..|.+.+||++-+..+.... .++..+++.+..++ ...+
T Consensus 1209 ----------------------------WlviGts~G~l~lWDLRF~~~i~sw~-----~P~~~~i~~v~~~~~~~~~S~ 1255 (1431)
T KOG1240|consen 1209 ----------------------------WLVIGTSRGQLVLWDLRFRVPILSWE-----HPARAPIRHVWLCPTYPQESV 1255 (1431)
T ss_pred ----------------------------EEEEecCCceEEEEEeecCceeeccc-----CcccCCcceEEeeccCCCCce
Confidence 38889999999999999888774322 22346777777663 3345
Q ss_pred EEEEEC-CCCEEEEEECCCCeEEEEecCCCC---------------------EEEEEEeCC-EEEEEEcCCeEEEEECCC
Q 001349 996 TASTSL-DGAAVKMWSTSNYNMVGSLPTLSE---------------------VRAMVVSSE-LVYLGCKGGTVEIWDQKR 1052 (1094)
Q Consensus 996 las~s~-Dg~~I~iwd~~~~~~~~~~~~~~~---------------------v~~l~~spd-~l~sgs~dg~I~vwd~~t 1052 (1094)
.++++. ..+.|.+|++.+|.+...+..... +.+....++ ++++|+.|..|+.||...
T Consensus 1256 ~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1256 SVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred EEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence 555443 335899999999877666642211 111112223 788999999999999654
Q ss_pred CcEE-----------------------------E-------------------Ee-------cccCCcceEEEEEcCC-C
Q 001349 1053 QIRI-----------------------------E-------------------TL-------QTGTSGKVQCMALDDN-E 1076 (1094)
Q Consensus 1053 ~~~~-----------------------------~-------------------~l-------~~~h~~~I~~l~~Spd-g 1076 (1094)
.... . .. ...|...|+++++-.. .
T Consensus 1336 p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q 1415 (1431)
T KOG1240|consen 1336 PEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQ 1415 (1431)
T ss_pred cccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCc
Confidence 2211 0 00 0235667888887543 3
Q ss_pred CEEEEEeCCCcEEEEe
Q 001349 1077 EFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1077 ~~L~sgs~DG~I~iWd 1092 (1094)
.+|++++.||.|+||.
T Consensus 1416 ~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1416 PLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred cEEEEecCCCeeeecC
Confidence 5899999999999994
No 205
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.38 E-value=1.9e-11 Score=128.58 Aligned_cols=223 Identities=17% Similarity=0.160 Sum_probs=164.2
Q ss_pred CCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCc-ceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEC-CCC
Q 001349 812 ENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI-LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSI-GNE 887 (1094)
Q Consensus 812 h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~-~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi-~~~ 887 (1094)
-..+|+|.+|++| .+|.+.....|.||...+.. ++..+++..|...|+.|+|+|.++.|++++.|..-+||.. ..+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 3578999999998 89999999999999998876 7899999999999999999999999999999999999998 444
Q ss_pred ceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC--CEEEEEEcCCeEEEEECCCC
Q 001349 888 EIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ--GKVYCGCQDGAIQEIDLATG 965 (1094)
Q Consensus 888 ~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~ 965 (1094)
+.+ .++.+..++...+++.+++ +++++|+....|.+|-++..
T Consensus 89 ~Wk------------------------------------ptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~E 132 (361)
T KOG1523|consen 89 TWK------------------------------------PTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQE 132 (361)
T ss_pred eec------------------------------------cceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecc
Confidence 321 1222233344444555543 46888888888888877654
Q ss_pred ceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECC-----C-------------CeEEEEe-cCCCCE
Q 001349 966 TFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTS-----N-------------YNMVGSL-PTLSEV 1026 (1094)
Q Consensus 966 ~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~-----~-------------~~~~~~~-~~~~~v 1026 (1094)
..-.... ..-..+...|+++.|+|++.+++.|+.|+ ..++|..- . |+++..+ ...+.+
T Consensus 133 NdWWVsK--hikkPirStv~sldWhpnnVLlaaGs~D~-k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwv 209 (361)
T KOG1523|consen 133 NDWWVSK--HIKKPIRSTVTSLDWHPNNVLLAAGSTDG-KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWV 209 (361)
T ss_pred cceehhh--hhCCccccceeeeeccCCcceecccccCc-ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCce
Confidence 4322111 12234567899999999999999999997 78888642 1 2223333 357889
Q ss_pred EEEEEeCC--EEEEEEcCCeEEEEECCCCc-EEEEecccCCcceEEEEEcC
Q 001349 1027 RAMVVSSE--LVYLGCKGGTVEIWDQKRQI-RIETLQTGTSGKVQCMALDD 1074 (1094)
Q Consensus 1027 ~~l~~spd--~l~sgs~dg~I~vwd~~t~~-~~~~l~~~h~~~I~~l~~Sp 1074 (1094)
..+.|+|+ .++-.+.|+++.+-|..... .+......+ -+..++.|-.
T Consensus 210 h~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~-lP~ls~~~is 259 (361)
T KOG1523|consen 210 HGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQ-LPLLSVSWIS 259 (361)
T ss_pred eeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhcc-CCceeeEeec
Confidence 99999976 78889999999999987664 344443333 4566666644
No 206
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.36 E-value=3.2e-11 Score=126.79 Aligned_cols=231 Identities=14% Similarity=0.082 Sum_probs=162.9
Q ss_pred cccccccccCcEEEEeeCCCCeEEEeCC-----cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEec-CCCccee
Q 001349 776 RKYSPLAFEMVKVLSNGHDSSADFWNHR-----ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTG-RGSILHL 847 (1094)
Q Consensus 776 ~~~~~~~~d~~~l~s~s~dg~I~vWd~~-----~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~-~t~~~~~ 847 (1094)
+..-++..|...++.+.....|.||... +..+++..|...|++|+|+|. .|++++.|..-+||.. .++.+++
T Consensus 13 itchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wkp 92 (361)
T KOG1523|consen 13 ITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKP 92 (361)
T ss_pred eeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeecc
Confidence 3345677789999999999999999865 466888999999999999994 9999999999999998 7788888
Q ss_pred EEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEE---EEecccCccceeeeecCceEEEeeCCCeEEEEE
Q 001349 848 IQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHC---VQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHL 924 (1094)
Q Consensus 848 ~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~---~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~ 924 (1094)
.-.+..|...+++|.|+|.++.+++||.-..|.||-.+...-.- ....++++.|.++. |.|++-.
T Consensus 93 tlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sld-------WhpnnVL----- 160 (361)
T KOG1523|consen 93 TLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLD-------WHPNNVL----- 160 (361)
T ss_pred ceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeee-------ccCCcce-----
Confidence 88888999999999999999999999999999999988754111 11223455566665 5665554
Q ss_pred eCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECC-----CCceeEE------ec-cceeecCCCCCeEEEEEeCC
Q 001349 925 RNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLA-----TGTFATI------QT-GHRKLLGKANPVHALQVHNG 992 (1094)
Q Consensus 925 ~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~-----~~~~~~~------~~-~~~~~~~h~~~V~sl~fs~~ 992 (1094)
+++|+.|+..+++..- ....... |. -...+....+.|..+.|+++
T Consensus 161 -----------------------laaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s 217 (361)
T KOG1523|consen 161 -----------------------LAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPS 217 (361)
T ss_pred -----------------------ecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCC
Confidence 4555555555555321 1000000 00 00112234578999999999
Q ss_pred ccEEEEEECCCCEEEEEECCCCe-EEEEec-CCCCEEEEEEeCC-EEEEEEcC
Q 001349 993 LVYTASTSLDGAAVKMWSTSNYN-MVGSLP-TLSEVRAMVVSSE-LVYLGCKG 1042 (1094)
Q Consensus 993 ~~~las~s~Dg~~I~iwd~~~~~-~~~~~~-~~~~v~~l~~spd-~l~sgs~d 1042 (1094)
|..++-.+.|+ ++.+-|..... .+.+.. ..-+..++.|-.+ .++.++.|
T Consensus 218 G~~lawv~Hds-~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~vv~ag~~ 269 (361)
T KOG1523|consen 218 GNRLAWVGHDS-TVSFVDAAGPSERVQSVATAQLPLLSVSWISENSVVAAGYD 269 (361)
T ss_pred CCEeeEecCCC-ceEEeecCCCchhccchhhccCCceeeEeecCCceeecCCC
Confidence 99999999996 99998887654 333333 2345555555433 44444443
No 207
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.35 E-value=3.8e-11 Score=156.89 Aligned_cols=310 Identities=13% Similarity=0.114 Sum_probs=223.6
Q ss_pred chHhHHHHHHHHHHHHHhccc-hHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHH
Q 001349 282 LNESEMAVLQIERCWLEASME-LDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVE 360 (1094)
Q Consensus 282 l~~~e~a~~~i~~~~~~~~~~-~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~ 360 (1094)
.+.+++++..+.-++...++. ..|...+..|. +++.|-. .+.++++.++..|.++...++.++..|.. .|+++
T Consensus 418 ~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~----LV~LL~s-~s~~iQ~~A~~~L~nLa~~ndenr~aIie-aGaIP 491 (2102)
T PLN03200 418 ADVQEELIRALSSLCCGKGGLWEALGGREGVQL----LISLLGL-SSEQQQEYAVALLAILTDEVDESKWAITA-AGGIP 491 (2102)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHH----HHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHH
Confidence 355677766666665443332 33443344444 5555554 57889999999999997777778888885 56999
Q ss_pred HHHHHHhcC----hHHHHHHHHhcCCChHHHHH-h---hhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcC----
Q 001349 361 RIVALFKKG----LLEAVVLIDLLRPSTRTLIE-M---DMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGD---- 428 (1094)
Q Consensus 361 ~L~~lLk~g----~~~Aa~~l~~L~~~~~~~~~-~---~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~---- 428 (1094)
+|+.+|+++ ..+|+.+|.+|.-..+|+.. + +.+|+|+++|++++.+. +..|...|.+|+..
T Consensus 492 ~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~-------q~~Aa~AL~nLi~~~d~~ 564 (2102)
T PLN03200 492 PLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKG-------QEIAAKTLTKLVRTADAA 564 (2102)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHH-------HHHHHHHHHHHHhccchh
Confidence 999999887 78999999999876655433 3 44599999999884321 12222223333221
Q ss_pred -----------Ccccc--------------cccc---hhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcch
Q 001349 429 -----------SEESI--------------VSSI---ANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCR 480 (1094)
Q Consensus 429 -----------~~~~~--------------~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r 480 (1094)
.+... ...+ ...+...||++.|++.+++|+.+.|..|+.+|...+..+...+
T Consensus 565 ~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~ 644 (2102)
T PLN03200 565 TISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLC 644 (2102)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHH
Confidence 11000 0000 0112246899999999999999999999999999999998988
Q ss_pred hhHhhhcCchhHHHHHHhcCCchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHH
Q 001349 481 NSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGL 560 (1094)
Q Consensus 481 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~ 560 (1094)
..+.+.+.++|++.+|++++...+..+...|..|....+.. + ...+-+.|.+.. |+..|.....+-.-.++..
T Consensus 645 ~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~---q-~~~~v~~GaV~p---L~~LL~~~d~~v~e~Al~A 717 (2102)
T PLN03200 645 ESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKEN---R-KVSYAAEDAIKP---LIKLAKSSSIEVAEQAVCA 717 (2102)
T ss_pred HHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHH---H-HHHHHHcCCHHH---HHHHHhCCChHHHHHHHHH
Confidence 99999999999999999998888888888888877654422 1 222345777777 8888888777878888888
Q ss_pred HHhhhcccCCCCCCccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhccccccc
Q 001349 561 LLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQGRFTT 613 (1094)
Q Consensus 561 l~~l~~~~~~~~~~~~reea~~~~~~~l~~~~~~~~~~~~~~~~~~l~g~~s~ 613 (1094)
|..+-.-.|-+.... +++++..|++-|++++. +.++.|+.||..|.-+|+.
T Consensus 718 LanLl~~~e~~~ei~-~~~~I~~Lv~lLr~G~~-~~k~~Aa~AL~~L~~~~~~ 768 (2102)
T PLN03200 718 LANLLSDPEVAAEAL-AEDIILPLTRVLREGTL-EGKRNAARALAQLLKHFPV 768 (2102)
T ss_pred HHHHHcCchHHHHHH-hcCcHHHHHHHHHhCCh-HHHHHHHHHHHHHHhCCCh
Confidence 888877655443333 68999999999999985 5599999999999977775
No 208
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.35 E-value=1.1e-11 Score=133.99 Aligned_cols=174 Identities=21% Similarity=0.247 Sum_probs=122.9
Q ss_pred CCCcEEEEEEeCC---EEEEEECCCeEEEEecCCC-------cceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 001349 812 ENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGS-------ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARV 881 (1094)
Q Consensus 812 h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~-------~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~v 881 (1094)
...+|..+.|.++ .++||+.|..|++|-+..+ ....+..+..|+..|+.+.|+|+|..|+||+++|.|.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 3568899999885 8999999999999977532 33456677899999999999999999999999999999
Q ss_pred EECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC--CEEEEEEcCCeEEE
Q 001349 882 WSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ--GKVYCGCQDGAIQE 959 (1094)
Q Consensus 882 Wdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~--~~l~sgs~Dg~I~i 959 (1094)
|....-... .... ... ..+ ..+++ ...+-.|...+..++|.+ ..+++|+.|..+++
T Consensus 92 Wk~~~~~~~-----~~d~---e~~-------~~k-e~w~v------~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l 149 (434)
T KOG1009|consen 92 WKQGDVRIF-----DADT---EAD-------LNK-EKWVV------KKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRL 149 (434)
T ss_pred EEecCcCCc-----cccc---hhh-------hCc-cceEE------EEEecccccchhhhhccCCCceeeeeeccceEEE
Confidence 987631000 0000 000 000 00000 001112344455555543 24889999999999
Q ss_pred EECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCC
Q 001349 960 IDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNY 1014 (1094)
Q Consensus 960 wDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~ 1014 (1094)
||+..|... ..+.+|...+..++|.|-+.++++-+.|- ..+.+++...
T Consensus 150 ~Dv~~G~l~------~~~~dh~~yvqgvawDpl~qyv~s~s~dr-~~~~~~~~~~ 197 (434)
T KOG1009|consen 150 WDVHAGQLL------AILDDHEHYVQGVAWDPLNQYVASKSSDR-HPEGFSAKLK 197 (434)
T ss_pred EEeccceeE------eeccccccccceeecchhhhhhhhhccCc-ccceeeeeee
Confidence 999999988 55667888999999999999999988873 5666665443
No 209
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.35 E-value=1.8e-11 Score=125.34 Aligned_cols=234 Identities=15% Similarity=0.179 Sum_probs=155.1
Q ss_pred cEEEEeeCCCCeEEEeCCc--ceeecc-cCCCcEEEEEEeC-CEEEEEECCCeEEEEecCCCcceeEEEe----------
Q 001349 786 VKVLSNGHDSSADFWNHRE--LVHVDS-SENGKVLSIACFR-DKIFSGHSDGTIKVWTGRGSILHLIQQI---------- 851 (1094)
Q Consensus 786 ~~l~s~s~dg~I~vWd~~~--~~~~~~-~h~~~V~~l~fsp-d~LaSgs~Dg~I~vWd~~t~~~~~~~~l---------- 851 (1094)
.++.+|...|.|++|++.+ ....+. .|...|+.+.--| +.+.+-+.|+.+.+|++..+....++.+
T Consensus 26 ~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrf 105 (323)
T KOG0322|consen 26 ERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRF 105 (323)
T ss_pred hhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEccCcceEEEeeeeccccccccc
Confidence 4689999999999999873 334444 5678899998888 5999999999999999876322111111
Q ss_pred -----------------------------------------cccCCCeEEEEEec-CCC--EEEEEeCCCcEEEEECCCC
Q 001349 852 -----------------------------------------REHTKAVTGLAILQ-SGE--MLYSGSLDKTARVWSIGNE 887 (1094)
Q Consensus 852 -----------------------------------------~~H~~~V~sv~fsp-dg~--~LaSgs~DgtI~vWdi~~~ 887 (1094)
.+..+.|.+..+.. ++. +++.|-.+|.|-+||+.++
T Consensus 106 Sl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~ 185 (323)
T KOG0322|consen 106 SLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTG 185 (323)
T ss_pred eeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCC
Confidence 01123344444322 222 4566777899999999886
Q ss_pred ceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC--CEEEEEEcCCeEEEEECCCC
Q 001349 888 EIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ--GKVYCGCQDGAIQEIDLATG 965 (1094)
Q Consensus 888 ~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~ 965 (1094)
. +.+...... + + .+ ..-.+...+.++.+.+ +.=++|+.+..+..|.+...
T Consensus 186 ~-~~~~~~~~~-k---v--------~~---------------~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s 237 (323)
T KOG0322|consen 186 D-KIIQLPQSS-K---V--------ES---------------PNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHS 237 (323)
T ss_pred c-eeecccccc-c---c--------cc---------------chhhccCcceeeeechhhcCCcCCCccccceeeeeccc
Confidence 3 111111000 0 0 00 0001223334444432 22356777777888877643
Q ss_pred ceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcC
Q 001349 966 TFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKG 1042 (1094)
Q Consensus 966 ~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~d 1042 (1094)
....... ....-....|..+.+-||+..+++++.|+ .||+|+.++..++..++ |...|++++|+|+ .+++++.|
T Consensus 238 ~gslq~~--~e~~lknpGv~gvrIRpD~KIlATAGWD~-RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD 314 (323)
T KOG0322|consen 238 TGSLQIR--KEITLKNPGVSGVRIRPDGKILATAGWDH-RIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKD 314 (323)
T ss_pred cCccccc--ceEEecCCCccceEEccCCcEEeecccCC-cEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCC
Confidence 2211111 11122234678889999999999999997 99999999999999888 8899999999999 89999999
Q ss_pred CeEEEEEC
Q 001349 1043 GTVEIWDQ 1050 (1094)
Q Consensus 1043 g~I~vwd~ 1050 (1094)
++|.+|++
T Consensus 315 ~rISLWkL 322 (323)
T KOG0322|consen 315 ARISLWKL 322 (323)
T ss_pred ceEEeeec
Confidence 99999986
No 210
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=4.3e-11 Score=127.77 Aligned_cols=244 Identities=14% Similarity=0.126 Sum_probs=164.0
Q ss_pred eecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCC----cceeEEEecc-cCCCeEEEEEecCCCEEEEEeCCCcE
Q 001349 807 HVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGS----ILHLIQQIRE-HTKAVTGLAILQSGEMLYSGSLDKTA 879 (1094)
Q Consensus 807 ~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~----~~~~~~~l~~-H~~~V~sv~fspdg~~LaSgs~DgtI 879 (1094)
.-+.+|.+.|.++.|+.+ +|++|+.|..+++|++..- ..+++..... |...|.|++|.....++++|+.+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 445689999999999986 9999999999999998632 1245554443 45899999999989999999999999
Q ss_pred EEEECCCCceEEEEecc---cCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCe
Q 001349 880 RVWSIGNEEIHCVQVHD---IKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGA 956 (1094)
Q Consensus 880 ~vWdi~~~~~~~~~~~~---~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~ 956 (1094)
...|+.+.+ .+.+.. ..+.|+.+. .+|. ++.+++.+.++.
T Consensus 130 I~HDiEt~q--si~V~~~~~~~~~VY~m~-------~~P~----------------------------DN~~~~~t~~~~ 172 (609)
T KOG4227|consen 130 IKHDIETKQ--SIYVANENNNRGDVYHMD-------QHPT----------------------------DNTLIVVTRAKL 172 (609)
T ss_pred Eeeecccce--eeeeecccCcccceeecc-------cCCC----------------------------CceEEEEecCce
Confidence 999999864 222222 233455544 3332 245888899999
Q ss_pred EEEEECCCCc-eeEEeccceeecCCCCCeEEEEEeCCcc-EEEEEECCCCEEEEEECCCCeE-EEEec------C-CCCE
Q 001349 957 IQEIDLATGT-FATIQTGHRKLLGKANPVHALQVHNGLV-YTASTSLDGAAVKMWSTSNYNM-VGSLP------T-LSEV 1026 (1094)
Q Consensus 957 I~iwDl~~~~-~~~~~~~~~~~~~h~~~V~sl~fs~~~~-~las~s~Dg~~I~iwd~~~~~~-~~~~~------~-~~~v 1026 (1094)
|.+||.+... .... ..........+++.|+|... ++++.+..+ -+-+||.+.... +.... . ...-
T Consensus 173 V~~~D~Rd~~~~~~~----~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~-G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~ 247 (609)
T KOG4227|consen 173 VSFIDNRDRQNPISL----VLPANSGKNFYTAEFHPETPALILVNSETG-GPNVFDRRMQARPVYQRSMFKGLPQENTEW 247 (609)
T ss_pred EEEEeccCCCCCCce----eeecCCCccceeeeecCCCceeEEeccccC-CCCceeeccccchHHhhhccccCcccchhh
Confidence 9999998765 2211 11223345678899998655 444444444 699999986432 11111 1 1223
Q ss_pred EEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCc-------ceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1027 RAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSG-------KVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1027 ~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~-------~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
.++.|+|+ .+.+--....-.+||+.+..+. .++..|.. .+.+++|--|. .+++|+.+-.|++|.+.
T Consensus 248 M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~-V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP 322 (609)
T KOG4227|consen 248 MGSLWSPSGNQFMSIRRGKCPLYFDFISQRCF-VLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLP 322 (609)
T ss_pred hheeeCCCCCeehhhhccCCCEEeeeecccce-eEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecC
Confidence 56778876 4544444444567787765432 33333322 57788887554 59999999999999873
No 211
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.33 E-value=6.5e-11 Score=139.75 Aligned_cols=224 Identities=15% Similarity=0.161 Sum_probs=146.8
Q ss_pred CCeEEEEecCCCcceeEEEecccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCceE-----EEEecccCccceeee
Q 001349 832 DGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEEIH-----CVQVHDIKDQIQNLA 905 (1094)
Q Consensus 832 Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fsp-dg~~LaSgs~DgtI~vWdi~~~~~~-----~~~~~~~~~~V~~v~ 905 (1094)
++.+.||++... ..+-..+ .-...|+++.|+| +.++++.|+.+|.|.+||++.+... +.....|..++..+.
T Consensus 221 ~~~~~vW~~~~p-~~Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vv 298 (555)
T KOG1587|consen 221 DGVLLVWSLKNP-NTPELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVV 298 (555)
T ss_pred CceEEEEecCCC-CCceEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEE
Confidence 358999999876 2344444 3577899999999 7889999999999999999987521 122223344444433
Q ss_pred ecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEE-eccceee-----cC
Q 001349 906 VSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATI-QTGHRKL-----LG 979 (1094)
Q Consensus 906 ~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~-~~~~~~~-----~~ 979 (1094)
|..+- .+..+++++.||.|..|+++.-..... ....... ..
T Consensus 299 -------W~~~~--------------------------~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~ 345 (555)
T KOG1587|consen 299 -------WLQNE--------------------------HNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSS 345 (555)
T ss_pred -------EeccC--------------------------CCCceEEEecCCcEeeeeccccccchhhcccccccccccccc
Confidence 11100 112489999999999998875443211 0000001 12
Q ss_pred CCCCeEEEEEeCCc-cEEEEEECCCCEEEEEECCC---Ce-----EE-EEecCCCCEEEEEEeCC---EEEEEEcCCeEE
Q 001349 980 KANPVHALQVHNGL-VYTASTSLDGAAVKMWSTSN---YN-----MV-GSLPTLSEVRAMVVSSE---LVYLGCKGGTVE 1046 (1094)
Q Consensus 980 h~~~V~sl~fs~~~-~~las~s~Dg~~I~iwd~~~---~~-----~~-~~~~~~~~v~~l~~spd---~l~sgs~dg~I~ 1046 (1094)
....++++.|.+.. ..++.|+.+| .|.--+... .. .. ....|.+.|.++.++|= .+.+++ |.+|+
T Consensus 346 ~~~~~t~~~F~~~~p~~FiVGTe~G-~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vr 423 (555)
T KOG1587|consen 346 KAVGATSLKFEPTDPNHFIVGTEEG-KVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVR 423 (555)
T ss_pred cccceeeEeeccCCCceEEEEcCCc-EEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeE
Confidence 23468899997543 3445555555 665523222 21 12 12237889999998874 444444 99999
Q ss_pred EEECC-CCcEEEEecccCCcceEEEEEcCCCC-EEEEEeCCCcEEEEeC
Q 001349 1047 IWDQK-RQIRIETLQTGTSGKVQCMALDDNEE-FLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1047 vwd~~-t~~~~~~l~~~h~~~I~~l~~Spdg~-~L~sgs~DG~I~iWdl 1093 (1094)
||.-. ...++..+. .+...|++++|||... .++++..||+|.+|||
T Consensus 424 iWs~~~~~~Pl~~~~-~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDL 471 (555)
T KOG1587|consen 424 IWSEDVIASPLLSLD-SSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDL 471 (555)
T ss_pred eccccCCCCcchhhh-hccceeeeeEEcCcCceEEEEEcCCCceehhhh
Confidence 99987 666777773 5677799999999774 5678888999999997
No 212
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.32 E-value=4.1e-12 Score=138.99 Aligned_cols=259 Identities=17% Similarity=0.249 Sum_probs=189.4
Q ss_pred ccccCcEEEEeeCCCCeEEEeCCcce-eecccCCCcEEEEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEecccCCCe
Q 001349 781 LAFEMVKVLSNGHDSSADFWNHRELV-HVDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAV 858 (1094)
Q Consensus 781 ~~~d~~~l~s~s~dg~I~vWd~~~~~-~~~~~h~~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V 858 (1094)
+.-+|..++.|+..|.+-.+|+.+.. .....-...|.++.|..+ .+++.....-++|||-.+- .++.++.| ..|
T Consensus 137 ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~Gt---ElHClk~~-~~v 212 (545)
T KOG1272|consen 137 YTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGT---ELHCLKRH-IRV 212 (545)
T ss_pred ecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCc---EEeehhhc-Cch
Confidence 44479999999999999999998433 222233577899999876 5555566788999997664 55556555 468
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCc
Q 001349 859 TGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYP 938 (1094)
Q Consensus 859 ~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v 938 (1094)
..+.|-|..-+|++++..|.++--|+.+|++.. ......+.+..+. -.|-
T Consensus 213 ~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa-~~~t~~G~~~vm~-------qNP~---------------------- 262 (545)
T KOG1272|consen 213 ARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVA-SIRTGAGRTDVMK-------QNPY---------------------- 262 (545)
T ss_pred hhhcccchhheeeecccCCceEEEeechhhhhH-HHHccCCccchhh-------cCCc----------------------
Confidence 999999999999999999999999999985211 0001111222221 1111
Q ss_pred eEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEE
Q 001349 939 KCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVG 1018 (1094)
Q Consensus 939 ~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~ 1018 (1094)
+..+-+|..+|+|.+|.....+++ .++..|.++|.+++++++|.|+++++.|. .++|||+++...+.
T Consensus 263 ------NaVih~GhsnGtVSlWSP~skePL------vKiLcH~g~V~siAv~~~G~YMaTtG~Dr-~~kIWDlR~~~ql~ 329 (545)
T KOG1272|consen 263 ------NAVIHLGHSNGTVSLWSPNSKEPL------VKILCHRGPVSSIAVDRGGRYMATTGLDR-KVKIWDLRNFYQLH 329 (545)
T ss_pred ------cceEEEcCCCceEEecCCCCcchH------HHHHhcCCCcceEEECCCCcEEeeccccc-ceeEeeeccccccc
Confidence 123667889999999999988877 57788999999999999999999999995 99999999988777
Q ss_pred EecCCCCEEEEEEeCCEEEEEEcCCeEEEEE-CCCC--cEEEE-ecccCCcceEEEEEcCCCCEEEEEeCCC
Q 001349 1019 SLPTLSEVRAMVVSSELVYLGCKGGTVEIWD-QKRQ--IRIET-LQTGTSGKVQCMALDDNEEFLVIGTSDG 1086 (1094)
Q Consensus 1019 ~~~~~~~v~~l~~spd~l~sgs~dg~I~vwd-~~t~--~~~~~-l~~~h~~~I~~l~~Spdg~~L~sgs~DG 1086 (1094)
++........+++|...+++.+....|.||. .-.+ ..-.- +...-.+.|.++.|.|-...|-.|...|
T Consensus 330 t~~tp~~a~~ls~SqkglLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 330 TYRTPHPASNLSLSQKGLLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred eeecCCCccccccccccceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 7777777889999999877788888899995 2221 11111 1111234899999999777776665555
No 213
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=6.9e-10 Score=131.95 Aligned_cols=212 Identities=12% Similarity=0.066 Sum_probs=142.5
Q ss_pred CeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeC---CCcEEEEECCCCceEEEEecccCccceeeeecCc
Q 001349 833 GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSL---DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNS 909 (1094)
Q Consensus 833 g~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~---DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~ 909 (1094)
..|.+||..+. ..+.+..|...+.+..|+|||+.|+..+. +..|.+||+.+++...+.. ....+....
T Consensus 182 ~~l~~~d~dg~---~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~--~~g~~~~~~---- 252 (435)
T PRK05137 182 KRLAIMDQDGA---NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGN--FPGMTFAPR---- 252 (435)
T ss_pred eEEEEECCCCC---CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeec--CCCcccCcE----
Confidence 47889998765 34556678889999999999999888764 4689999999886443332 233344444
Q ss_pred eEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCC--eEEEEECCCCceeEEeccceeecCCCCCeEEE
Q 001349 910 ILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDG--AIQEIDLATGTFATIQTGHRKLLGKANPVHAL 987 (1094)
Q Consensus 910 ~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg--~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl 987 (1094)
|+|||+.++. +.+.++ .|.+||+.++... .+..+.......
T Consensus 253 ---~SPDG~~la~---------------------------~~~~~g~~~Iy~~d~~~~~~~-------~Lt~~~~~~~~~ 295 (435)
T PRK05137 253 ---FSPDGRKVVM---------------------------SLSQGGNTDIYTMDLRSGTTT-------RLTDSPAIDTSP 295 (435)
T ss_pred ---ECCCCCEEEE---------------------------EEecCCCceEEEEECCCCceE-------EccCCCCccCce
Confidence 9999987543 233333 4777898887653 233344456678
Q ss_pred EEeCCccEEEEEECCC--CEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcC---CeEEEEECCCCcEEEEec
Q 001349 988 QVHNGLVYTASTSLDG--AAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKG---GTVEIWDQKRQIRIETLQ 1060 (1094)
Q Consensus 988 ~fs~~~~~las~s~Dg--~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~d---g~I~vwd~~t~~~~~~l~ 1060 (1094)
.|+||+..++..+..+ ..|.+||+.++.......+...+....|+|| .++..+.+ ..|.+||..++.. ..+.
T Consensus 296 ~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt 374 (435)
T PRK05137 296 SYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT 374 (435)
T ss_pred eEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc
Confidence 9999998887766432 2688889876655443334555677889998 55554432 4688899866543 4443
Q ss_pred ccCCcceEEEEEcCCCCEEEEEeCC------CcEEEEeC
Q 001349 1061 TGTSGKVQCMALDDNEEFLVIGTSD------GRIQAWGL 1093 (1094)
Q Consensus 1061 ~~h~~~I~~l~~Spdg~~L~sgs~D------G~I~iWdl 1093 (1094)
.+ ..+....|+|||+.|+..+.+ ..+.++|+
T Consensus 375 ~~--~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl 411 (435)
T PRK05137 375 SG--FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDL 411 (435)
T ss_pred CC--CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEEC
Confidence 22 357788999999988765543 24666665
No 214
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.30 E-value=1.2e-09 Score=125.62 Aligned_cols=293 Identities=15% Similarity=0.210 Sum_probs=175.3
Q ss_pred EEEEeeCCCCeEEEeCCc--ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEE
Q 001349 787 KVLSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLA 862 (1094)
Q Consensus 787 ~l~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~ 862 (1094)
.+++-..++.|.+.|..+ ....+..+...-..+.|+|| ++++.+.||.|.+||+.++ +.+.+++.. ....+++
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~--~~v~~i~~G-~~~~~i~ 84 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATG--KVVATIKVG-GNPRGIA 84 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSS--SEEEEEE-S-SEEEEEE
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcc--cEEEEEecC-CCcceEE
Confidence 446677789999999873 44445444444455778986 8888899999999999999 688888654 4467899
Q ss_pred EecCCCEEEEEe-CCCcEEEEECCCCce-EEEEeccc-----CccceeeeecCceEEEeeCCCeEEEEEeC-CeEEEEc-
Q 001349 863 ILQSGEMLYSGS-LDKTARVWSIGNEEI-HCVQVHDI-----KDQIQNLAVSNSILCFIPQGAGIKVHLRN-GKTKLLN- 933 (1094)
Q Consensus 863 fspdg~~LaSgs-~DgtI~vWdi~~~~~-~~~~~~~~-----~~~V~~v~~~~~~~~fspdg~~l~~~~~~-g~i~l~~- 933 (1094)
+|+||++++++. .++++.++|..+.+. +.+..... ...+..+. .+|.....++...+ +.+-+.+
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv-------~s~~~~~fVv~lkd~~~I~vVdy 157 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIV-------ASPGRPEFVVNLKDTGEIWVVDY 157 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEE-------E-SSSSEEEEEETTTTEEEEEET
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEE-------ecCCCCEEEEEEccCCeEEEEEe
Confidence 999999998776 589999999998752 22222211 12333443 45555544444333 5554444
Q ss_pred ------------CCCCceEEEEeCC--EE-EEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEE-------E--
Q 001349 934 ------------SSKYPKCLALVQG--KV-YCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQ-------V-- 989 (1094)
Q Consensus 934 ------------~~~~v~~l~~s~~--~l-~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~-------f-- 989 (1094)
.........++++ ++ +....++.|-++|..+++........ -..|..+...+- |
T Consensus 158 ~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g--~~p~~~~~~~~php~~g~vw~~ 235 (369)
T PF02239_consen 158 SDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTG--KKPHPGPGANFPHPGFGPVWAT 235 (369)
T ss_dssp TTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-S--SSBEETTEEEEEETTTEEEEEE
T ss_pred ccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeecc--ccccccccccccCCCcceEEee
Confidence 2334455566553 33 44566778999999998776543211 112222332221 1
Q ss_pred eCCccEE-EEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEE----EcCCeEEEEECCCCcEEEEeccc
Q 001349 990 HNGLVYT-ASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLG----CKGGTVEIWDQKRQIRIETLQTG 1062 (1094)
Q Consensus 990 s~~~~~l-as~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sg----s~dg~I~vwd~~t~~~~~~l~~~ 1062 (1094)
...+... ...+.+ .+.+||..+++.++++...+.-..+..+|+ ++++. ...++|.|+|..+.+.+.++..+
T Consensus 236 ~~~~~~~~~~ig~~--~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~ 313 (369)
T PF02239_consen 236 SGLGYFAIPLIGTD--PVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPG 313 (369)
T ss_dssp EBSSSSEEEEEE----TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHH
T ss_pred ccccceecccccCC--ccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEecc
Confidence 1111221 222222 567899999999999995444478888998 77776 45689999999999888888544
Q ss_pred CCcceEEEEEcCCCCEEEEEeCC--CcEEEEeC
Q 001349 1063 TSGKVQCMALDDNEEFLVIGTSD--GRIQAWGL 1093 (1094)
Q Consensus 1063 h~~~I~~l~~Spdg~~L~sgs~D--G~I~iWdl 1093 (1094)
....+..+.|++||+.+..+..+ |.|.+||-
T Consensus 314 ~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~ 346 (369)
T PF02239_consen 314 PGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDA 346 (369)
T ss_dssp HT--EEEEEE-TTSSEEEEEEE--TTEEEEEET
T ss_pred CCCcEeccEECCCCCEEEEEEecCCCEEEEEEC
Confidence 44469999999999977665544 36999985
No 215
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.30 E-value=1.2e-12 Score=99.22 Aligned_cols=39 Identities=33% Similarity=0.773 Sum_probs=31.8
Q ss_pred ccCccccccCcEEcCCcccccHHhHHHHHHhCCC---CCCCC
Q 001349 166 CPITTHIFDDPVTLETGQTYERRAIQEWIERGNS---SCPIT 204 (1094)
Q Consensus 166 CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~---~CP~c 204 (1094)
||||+++|+|||+++|||+||+.||.+|++.... .||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999999999999999999999999986433 59987
No 216
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=4.9e-10 Score=133.08 Aligned_cols=212 Identities=15% Similarity=0.061 Sum_probs=140.4
Q ss_pred CeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCC---CcEEEEECCCCceEEEEecccCccceeeeecCc
Q 001349 833 GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD---KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNS 909 (1094)
Q Consensus 833 g~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~D---gtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~ 909 (1094)
.+|.+||..+. ..+.+..|...+.+..|+|||+.|+.++.+ ..|.+||+.+++...+... .......
T Consensus 184 ~~l~i~D~~g~---~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~--~g~~~~~----- 253 (433)
T PRK04922 184 YALQVADSDGY---NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASF--RGINGAP----- 253 (433)
T ss_pred EEEEEECCCCC---CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccC--CCCccCc-----
Confidence 46999998765 334455677889999999999999988743 4699999998864433322 2222233
Q ss_pred eEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcC--CeEEEEECCCCceeEEeccceeecCCCCCeEEE
Q 001349 910 ILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQD--GAIQEIDLATGTFATIQTGHRKLLGKANPVHAL 987 (1094)
Q Consensus 910 ~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~D--g~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl 987 (1094)
.|+|||+.++. +.+.+ ..|++||+.++... .+..+.......
T Consensus 254 --~~SpDG~~l~~---------------------------~~s~~g~~~Iy~~d~~~g~~~-------~lt~~~~~~~~~ 297 (433)
T PRK04922 254 --SFSPDGRRLAL---------------------------TLSRDGNPEIYVMDLGSRQLT-------RLTNHFGIDTEP 297 (433)
T ss_pred --eECCCCCEEEE---------------------------EEeCCCCceEEEEECCCCCeE-------ECccCCCCccce
Confidence 39999987543 22333 36899999888753 233344445678
Q ss_pred EEeCCccEEEEEECCCC--EEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcC---CeEEEEECCCCcEEEEec
Q 001349 988 QVHNGLVYTASTSLDGA--AVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKG---GTVEIWDQKRQIRIETLQ 1060 (1094)
Q Consensus 988 ~fs~~~~~las~s~Dg~--~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~d---g~I~vwd~~t~~~~~~l~ 1060 (1094)
.|+|++..++..+..++ .|.++|+.+++......+.......+|+|| +++..+.+ ..|.+||+.+++.. .+.
T Consensus 298 ~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt 376 (433)
T PRK04922 298 TWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT 376 (433)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC
Confidence 99999998887764332 477777777654332223344557899998 56554433 26999999888754 442
Q ss_pred ccCCcceEEEEEcCCCCEEEEEeCC---CcEEEEeC
Q 001349 1061 TGTSGKVQCMALDDNEEFLVIGTSD---GRIQAWGL 1093 (1094)
Q Consensus 1061 ~~h~~~I~~l~~Spdg~~L~sgs~D---G~I~iWdl 1093 (1094)
+........|+|||++++..+.+ +.|.+|++
T Consensus 377 --~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~ 410 (433)
T PRK04922 377 --PGSLDESPSFAPNGSMVLYATREGGRGVLAAVST 410 (433)
T ss_pred --CCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 22245677999999988776653 34666664
No 217
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.30 E-value=2.1e-11 Score=135.54 Aligned_cols=215 Identities=18% Similarity=0.244 Sum_probs=150.5
Q ss_pred eeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEe
Q 001349 846 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLR 925 (1094)
Q Consensus 846 ~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~ 925 (1094)
.....+.||++.|+++.|+.||.+|+|||+|-.+.|||.-..++.......|...|.++. |.|...
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvK-------FvP~tn------- 106 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVK-------FVPYTN------- 106 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEe-------eeccCC-------
Confidence 345678899999999999999999999999999999999876544444445566666665 544332
Q ss_pred CCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeE----EeccceeecCCCCCeEEEEEeCCc-cEEEEEE
Q 001349 926 NGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFAT----IQTGHRKLLGKANPVHALQVHNGL-VYTASTS 1000 (1094)
Q Consensus 926 ~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~----~~~~~~~~~~h~~~V~sl~fs~~~-~~las~s 1000 (1094)
+..+++|..|..|+++|+...+... .......+..|...|..++..|++ ..+-+++
T Consensus 107 -------------------nriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtfwsas 167 (758)
T KOG1310|consen 107 -------------------NRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSAS 167 (758)
T ss_pred -------------------CeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEec
Confidence 1248899999999999998522211 111114566788899999998887 6777888
Q ss_pred CCCCEEEEEECCCCeEE-EE------ec--C--CCCEEEEEEeCC---EEEEEEcCCeEEEEECCC--------Cc----
Q 001349 1001 LDGAAVKMWSTSNYNMV-GS------LP--T--LSEVRAMVVSSE---LVYLGCKGGTVEIWDQKR--------QI---- 1054 (1094)
Q Consensus 1001 ~Dg~~I~iwd~~~~~~~-~~------~~--~--~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t--------~~---- 1054 (1094)
.|| +++-+|++..... .. +. + --...++.++|. ++++|+.|-..++||.+. ++
T Consensus 168 EDG-tirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~ 246 (758)
T KOG1310|consen 168 EDG-TIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTC 246 (758)
T ss_pred CCc-ceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCC
Confidence 887 9999999863211 11 11 1 134568888876 899999999999999321 11
Q ss_pred ------EEEEecccCCc-----------ceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1055 ------RIETLQTGTSG-----------KVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1055 ------~~~~l~~~h~~-----------~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
++..|-.+|.. .++-+.|+|+|.-|+..-..-.|+++|++
T Consensus 247 pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn 303 (758)
T KOG1310|consen 247 PPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVN 303 (758)
T ss_pred CCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeec
Confidence 24444344431 25778899999655554444579999874
No 218
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=8.3e-10 Score=130.64 Aligned_cols=212 Identities=14% Similarity=0.061 Sum_probs=139.9
Q ss_pred CeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeC---CCcEEEEECCCCceEEEEecccCccceeeeecCc
Q 001349 833 GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSL---DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNS 909 (1094)
Q Consensus 833 g~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~---DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~ 909 (1094)
..|.+||..+.. .+.+..+...+.+..|||||+.|+..+. +..|.+||+.+++...+... ...+...
T Consensus 179 ~~l~~~d~dg~~---~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~--~~~~~~~----- 248 (429)
T PRK03629 179 YELRVSDYDGYN---QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF--PRHNGAP----- 248 (429)
T ss_pred eeEEEEcCCCCC---CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC--CCCcCCe-----
Confidence 378999988763 2334456778999999999999887643 45799999998864443322 2223333
Q ss_pred eEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcC--CeEEEEECCCCceeEEeccceeecCCCCCeEEE
Q 001349 910 ILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQD--GAIQEIDLATGTFATIQTGHRKLLGKANPVHAL 987 (1094)
Q Consensus 910 ~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~D--g~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl 987 (1094)
.|+|||+.++... +.+ ..|.+||+.++.... +..+...+...
T Consensus 249 --~~SPDG~~La~~~---------------------------~~~g~~~I~~~d~~tg~~~~-------lt~~~~~~~~~ 292 (429)
T PRK03629 249 --AFSPDGSKLAFAL---------------------------SKTGSLNLYVMDLASGQIRQ-------VTDGRSNNTEP 292 (429)
T ss_pred --EECCCCCEEEEEE---------------------------cCCCCcEEEEEECCCCCEEE-------ccCCCCCcCce
Confidence 3999998764322 223 358899998887542 22333456788
Q ss_pred EEeCCccEEEEEECCCCE--EEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEc-C--CeEEEEECCCCcEEEEec
Q 001349 988 QVHNGLVYTASTSLDGAA--VKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCK-G--GTVEIWDQKRQIRIETLQ 1060 (1094)
Q Consensus 988 ~fs~~~~~las~s~Dg~~--I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~-d--g~I~vwd~~t~~~~~~l~ 1060 (1094)
.|+|++..++..+.+++. |.++|+.++................|+|| +++..+. + ..|++||+.+++.. .+.
T Consensus 293 ~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt 371 (429)
T PRK03629 293 TWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLT 371 (429)
T ss_pred EECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeC
Confidence 999999988777655434 44556766654332223445567889998 5555443 3 46889999888643 442
Q ss_pred ccCCcceEEEEEcCCCCEEEEEeCCCc---EEEEeC
Q 001349 1061 TGTSGKVQCMALDDNEEFLVIGTSDGR---IQAWGL 1093 (1094)
Q Consensus 1061 ~~h~~~I~~l~~Spdg~~L~sgs~DG~---I~iWdl 1093 (1094)
..+ ......|+|||++|+.++.++. +.+|++
T Consensus 372 ~~~--~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~ 405 (429)
T PRK03629 372 DTF--LDETPSIAPNGTMVIYSSSQGMGSVLNLVST 405 (429)
T ss_pred CCC--CCCCceECCCCCEEEEEEcCCCceEEEEEEC
Confidence 222 2456789999999999888765 566654
No 219
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=1.8e-09 Score=127.79 Aligned_cols=231 Identities=13% Similarity=0.092 Sum_probs=149.1
Q ss_pred CCeEEEeCCc-ceeecccCCCcEEEEEEeCC--EEEEEE---CCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCC
Q 001349 795 SSADFWNHRE-LVHVDSSENGKVLSIACFRD--KIFSGH---SDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGE 868 (1094)
Q Consensus 795 g~I~vWd~~~-~~~~~~~h~~~V~~l~fspd--~LaSgs---~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~ 868 (1094)
..|.+||.+. ....+..+...+.+.+|+|| .|+..+ .+..|.+||+.++....+..+.+| +....|+|||+
T Consensus 179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~---~~~~~~SPDG~ 255 (429)
T PRK03629 179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH---NGAPAFSPDGS 255 (429)
T ss_pred eeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCC---cCCeEECCCCC
Confidence 3688888762 33445567778999999997 555433 345799999998854444444444 45689999999
Q ss_pred EEEEE-eCCC--cEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC
Q 001349 869 MLYSG-SLDK--TARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ 945 (1094)
Q Consensus 869 ~LaSg-s~Dg--tI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~ 945 (1094)
.|+.. +.+| .|.+||+.+++...+.. ....+... .|+|||+.++....
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~~~~lt~--~~~~~~~~-------~wSPDG~~I~f~s~-------------------- 306 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQIRQVTD--GRSNNTEP-------TWFPDSQNLAYTSD-------------------- 306 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCEEEccC--CCCCcCce-------EECCCCCEEEEEeC--------------------
Confidence 88755 4455 48899999876443322 22233333 39999987543322
Q ss_pred CEEEEEEcCC--eEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCC--CEEEEEECCCCeEEEEec
Q 001349 946 GKVYCGCQDG--AIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG--AAVKMWSTSNYNMVGSLP 1021 (1094)
Q Consensus 946 ~~l~sgs~Dg--~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg--~~I~iwd~~~~~~~~~~~ 1021 (1094)
.++ .|..+|+.++.... +..+........|+|++.+++..+.++ ..|.+||+.++... .+.
T Consensus 307 -------~~g~~~Iy~~d~~~g~~~~-------lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt 371 (429)
T PRK03629 307 -------QAGRPQVYKVNINGGAPQR-------ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLT 371 (429)
T ss_pred -------CCCCceEEEEECCCCCeEE-------eecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeC
Confidence 222 34555776665432 122223455788999999887766543 36888999887643 344
Q ss_pred CCCCEEEEEEeCC--EEEEEEcCCe---EEEEECCCCcEEEEecccCCcceEEEEEcC
Q 001349 1022 TLSEVRAMVVSSE--LVYLGCKGGT---VEIWDQKRQIRIETLQTGTSGKVQCMALDD 1074 (1094)
Q Consensus 1022 ~~~~v~~l~~spd--~l~sgs~dg~---I~vwd~~t~~~~~~l~~~h~~~I~~l~~Sp 1074 (1094)
.........|+|| .++.++.++. +++|++. |.....+ .+|.+.+...+|+|
T Consensus 372 ~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l-~~~~~~~~~p~Wsp 427 (429)
T PRK03629 372 DTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARL-PATDGQVKFPAWSP 427 (429)
T ss_pred CCCCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEEC-ccCCCCcCCcccCC
Confidence 3333456789999 6777666653 7777874 5555666 36778899999987
No 220
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.28 E-value=2.8e-09 Score=112.54 Aligned_cols=227 Identities=12% Similarity=0.198 Sum_probs=151.4
Q ss_pred cEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCC--CeEEEEEecCCCEEEE-EeCC------CcEEEEE
Q 001349 815 KVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTK--AVTGLAILQSGEMLYS-GSLD------KTARVWS 883 (1094)
Q Consensus 815 ~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~--~V~sv~fspdg~~LaS-gs~D------gtI~vWd 883 (1094)
...+++|+.| -++.|..+| .+||+.+-- +....-+-+.+ .+..|-| ..++++- ||.+ ..|.|||
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~--ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPF--KESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCch--hhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEe
Confidence 4456899987 666665555 899987642 12111111222 2223333 2345443 3333 4699999
Q ss_pred CCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeC--CeEEEEcC---CCCceEEEEeCCE--EE-EEEcCC
Q 001349 884 IGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRN--GKTKLLNS---SKYPKCLALVQGK--VY-CGCQDG 955 (1094)
Q Consensus 884 i~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~--g~i~l~~~---~~~v~~l~~s~~~--l~-sgs~Dg 955 (1094)
=.. .+++.......+|.++.+..+.++..-.++..+....+ ..+..++. .+..+++....+. |+ =|-.-|
T Consensus 82 D~k--~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~G 159 (346)
T KOG2111|consen 82 DLK--ERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTG 159 (346)
T ss_pred ccc--CcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccc
Confidence 333 36677777788999998766655554444433322221 12222322 2334444443332 22 256679
Q ss_pred eEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec---CCCCEEEEEEe
Q 001349 956 AIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP---TLSEVRAMVVS 1032 (1094)
Q Consensus 956 ~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~---~~~~v~~l~~s 1032 (1094)
.|++-|+...+.- .+..+.+|...|.+++.+.+|..+|++|..|..|||||..+|..+..+. ....|.+++||
T Consensus 160 qvQi~dL~~~~~~----~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFS 235 (346)
T KOG2111|consen 160 QVQIVDLASTKPN----APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFS 235 (346)
T ss_pred eEEEEEhhhcCcC----CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeC
Confidence 9999999876552 1256788999999999999999999999999899999999999999998 35779999999
Q ss_pred CC--EEEEEEcCCeEEEEECCC
Q 001349 1033 SE--LVYLGCKGGTVEIWDQKR 1052 (1094)
Q Consensus 1033 pd--~l~sgs~dg~I~vwd~~t 1052 (1094)
|+ +++++|+.|+|+||.+..
T Consensus 236 p~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 236 PNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CCccEEEEEcCCCeEEEEEeec
Confidence 99 899999999999998754
No 221
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=7.4e-10 Score=131.58 Aligned_cols=231 Identities=14% Similarity=0.060 Sum_probs=148.5
Q ss_pred CCeEEEeCC-cceeecccCCCcEEEEEEeCC--EEEEEEC---CCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCC
Q 001349 795 SSADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHS---DGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGE 868 (1094)
Q Consensus 795 g~I~vWd~~-~~~~~~~~h~~~V~~l~fspd--~LaSgs~---Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~ 868 (1094)
..|.+||.. .....+..|...+.+.+|+|| .|+..+. +..|++||+.++....+ ..+.+...+..|+|||+
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l---~~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV---ASFRGINGAPSFSPDGR 260 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe---ccCCCCccCceECCCCC
Confidence 368888876 334456677788999999997 6776653 34799999998843333 33444556789999998
Q ss_pred EEE-EEeCCC--cEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC
Q 001349 869 MLY-SGSLDK--TARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ 945 (1094)
Q Consensus 869 ~La-Sgs~Dg--tI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~ 945 (1094)
.|+ +.+.+| .|++||+.+++...+. .+....... .|+|||+.++..+
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~lt--~~~~~~~~~-------~~spDG~~l~f~s--------------------- 310 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQLTRLT--NHFGIDTEP-------TWAPDGKSIYFTS--------------------- 310 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCeEECc--cCCCCccce-------EECCCCCEEEEEE---------------------
Confidence 775 555555 5999999988643332 222222233 3899998754332
Q ss_pred CEEEEEEcCC--eEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCC--CEEEEEECCCCeEEEEec
Q 001349 946 GKVYCGCQDG--AIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG--AAVKMWSTSNYNMVGSLP 1021 (1094)
Q Consensus 946 ~~l~sgs~Dg--~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg--~~I~iwd~~~~~~~~~~~ 1021 (1094)
..+| .|.++|+.++..... ..+........|+|++.+++..+.++ ..|.+||+.++... .+.
T Consensus 311 ------d~~g~~~iy~~dl~~g~~~~l-------t~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt 376 (433)
T PRK04922 311 ------DRGGRPQIYRVAASGGSAERL-------TFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT 376 (433)
T ss_pred ------CCCCCceEEEEECCCCCeEEe-------ecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC
Confidence 1222 366677766654321 11222344689999999888765443 26999999887654 454
Q ss_pred CCCCEEEEEEeCC--EEEEEEc---CCeEEEEECCCCcEEEEecccCCcceEEEEEcC
Q 001349 1022 TLSEVRAMVVSSE--LVYLGCK---GGTVEIWDQKRQIRIETLQTGTSGKVQCMALDD 1074 (1094)
Q Consensus 1022 ~~~~v~~l~~spd--~l~sgs~---dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Sp 1074 (1094)
+........|+|| .++..+. .+.|++++...+ ....+ ..+.+.+...+|+|
T Consensus 377 ~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~-~~~~l-~~~~g~~~~p~wsp 432 (433)
T PRK04922 377 PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR-VRQRL-VSADGEVREPAWSP 432 (433)
T ss_pred CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEEc-ccCCCCCCCCccCC
Confidence 4444566789998 4554443 346888888543 44555 24556778888886
No 222
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=5.9e-09 Score=111.46 Aligned_cols=267 Identities=13% Similarity=0.139 Sum_probs=154.2
Q ss_pred ccccCcEEEEeeCCCCeEEEeCC-cceeecc-cCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCC-cc---------
Q 001349 781 LAFEMVKVLSNGHDSSADFWNHR-ELVHVDS-SENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGS-IL--------- 845 (1094)
Q Consensus 781 ~~~d~~~l~s~s~dg~I~vWd~~-~~~~~~~-~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~-~~--------- 845 (1094)
+...-..++++..|-+|++|+-+ +....++ .....|+|++|-|. .|+.|+..| |.+|..... ..
T Consensus 106 WhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~ 184 (445)
T KOG2139|consen 106 WHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMST 184 (445)
T ss_pred echhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccc
Confidence 33345677889999999999977 3333333 23578999999994 788888755 889976421 00
Q ss_pred --eeEEEecccCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEE
Q 001349 846 --HLIQQIREHTKAVTGLAILQSGEMLYSGSL-DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKV 922 (1094)
Q Consensus 846 --~~~~~l~~H~~~V~sv~fspdg~~LaSgs~-DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~ 922 (1094)
..+....+| ..|+++.|.+||..+++++. |..|+|||.+++....+... ..+.+.-+. |+|||..+..
T Consensus 185 ~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~-glgg~slLk-------wSPdgd~lfa 255 (445)
T KOG2139|consen 185 HHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK-GLGGFSLLK-------WSPDGDVLFA 255 (445)
T ss_pred cchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc-CCCceeeEE-------EcCCCCEEEE
Confidence 112223455 68999999999999999986 67899999999864444322 223344444 9999987555
Q ss_pred EEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECC
Q 001349 923 HLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLD 1002 (1094)
Q Consensus 923 ~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~D 1002 (1094)
...|+..++|+.+..-++..+ .--.+.|....|+|.|.++.-....
T Consensus 256 At~davfrlw~e~q~wt~erw----------------------------------~lgsgrvqtacWspcGsfLLf~~sg 301 (445)
T KOG2139|consen 256 ATCDAVFRLWQENQSWTKERW----------------------------------ILGSGRVQTACWSPCGSFLLFACSG 301 (445)
T ss_pred ecccceeeeehhcccceecce----------------------------------eccCCceeeeeecCCCCEEEEEEcC
Confidence 555544444433222222221 1111244555555554443332221
Q ss_pred CCEEEEEECCC----C-----------eEE------EEec----CCCCEEEEEEeCC--EEEEEEcC--------CeEEE
Q 001349 1003 GAAVKMWSTSN----Y-----------NMV------GSLP----TLSEVRAMVVSSE--LVYLGCKG--------GTVEI 1047 (1094)
Q Consensus 1003 g~~I~iwd~~~----~-----------~~~------~~~~----~~~~v~~l~~spd--~l~sgs~d--------g~I~v 1047 (1094)
.-++|.+.- + .++ .... -.+.+.+++|+|. ++++.... +.|.+
T Consensus 302 --sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~ 379 (445)
T KOG2139|consen 302 --SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISR 379 (445)
T ss_pred --CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhh
Confidence 222332210 0 001 1111 2567889999987 77765543 34677
Q ss_pred EECCCCcEEEEecccC--CcceEEEEEcC---CCCEEEEEeCCCcEEEEeC
Q 001349 1048 WDQKRQIRIETLQTGT--SGKVQCMALDD---NEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1048 wd~~t~~~~~~l~~~h--~~~I~~l~~Sp---dg~~L~sgs~DG~I~iWdl 1093 (1094)
||....-.+.-...|- .....-++|+| +|.+|..+=+.|.|.-|++
T Consensus 380 fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 380 FDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred hcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 8876544333221111 11234455654 5667777777888877665
No 223
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.25 E-value=2.5e-10 Score=123.20 Aligned_cols=212 Identities=13% Similarity=0.210 Sum_probs=153.1
Q ss_pred ccccccCcEEEEeeCCCCeEEEeCCc------ceeecccCCCcEEEEEEeC---CEEEEEECC--CeEEEEecCCCccee
Q 001349 779 SPLAFEMVKVLSNGHDSSADFWNHRE------LVHVDSSENGKVLSIACFR---DKIFSGHSD--GTIKVWTGRGSILHL 847 (1094)
Q Consensus 779 ~~~~~d~~~l~s~s~dg~I~vWd~~~------~~~~~~~h~~~V~~l~fsp---d~LaSgs~D--g~I~vWd~~t~~~~~ 847 (1094)
..+.....++++|-.+|.+.+|..+. ....+..+ ..+..+.-++ ..+++|+.. ..++|||+.+. +.
T Consensus 109 ~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~--~q 185 (412)
T KOG3881|consen 109 KGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS--KQ 185 (412)
T ss_pred cchhhcCCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccc--ee
Confidence 33444467899999999999998761 11222222 3444554444 388889999 89999999987 55
Q ss_pred EEEecccC---------CCeEEEEEecC--CCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeC
Q 001349 848 IQQIREHT---------KAVTGLAILQS--GEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQ 916 (1094)
Q Consensus 848 ~~~l~~H~---------~~V~sv~fspd--g~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspd 916 (1094)
++.-+.-. -+++++.|-+. ...|++++.-+.+|+||+..+........-...++.++. ..|+
T Consensus 186 iw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~-------l~p~ 258 (412)
T KOG3881|consen 186 IWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTG-------LTPS 258 (412)
T ss_pred eeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeee-------ecCC
Confidence 55433211 24678899886 789999999999999999986422222222233344433 3344
Q ss_pred CCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEE
Q 001349 917 GAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYT 996 (1094)
Q Consensus 917 g~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~l 996 (1094)
|+ .+++|..-|.+..||++++.... ..+.+..+.|+++..+|++.++
T Consensus 259 gn----------------------------~Iy~gn~~g~l~~FD~r~~kl~g-----~~~kg~tGsirsih~hp~~~~l 305 (412)
T KOG3881|consen 259 GN----------------------------FIYTGNTKGQLAKFDLRGGKLLG-----CGLKGITGSIRSIHCHPTHPVL 305 (412)
T ss_pred Cc----------------------------EEEEecccchhheecccCceeec-----cccCCccCCcceEEEcCCCceE
Confidence 43 48899999999999999998763 3467788999999999999999
Q ss_pred EEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC
Q 001349 997 ASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE 1034 (1094)
Q Consensus 997 as~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd 1034 (1094)
++++.| +.|||+|+.+.+++....-...++++.+.++
T Consensus 306 as~GLD-RyvRIhD~ktrkll~kvYvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 306 ASCGLD-RYVRIHDIKTRKLLHKVYVKSRLTFILLRDD 342 (412)
T ss_pred Eeeccc-eeEEEeecccchhhhhhhhhccccEEEecCC
Confidence 999999 5999999999877776666667777777654
No 224
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.24 E-value=1.1e-09 Score=122.95 Aligned_cols=263 Identities=10% Similarity=0.110 Sum_probs=176.8
Q ss_pred cCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcceeEEEecccC--CCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 001349 811 SENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHT--KAVTGLAILQSGEMLYSGSLDKTARVWSIG 885 (1094)
Q Consensus 811 ~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~--~~V~sv~fspdg~~LaSgs~DgtI~vWdi~ 885 (1094)
.|...-+.|..+|| .++||.+--.|++||+..-.+ .|..|. ..|.-.-.+-|-..++--..|.+|-+..--
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL----KFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~ 124 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL----KFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY 124 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEccccee----eeeecccccceeEEEeccchhhheEeecCceeeehhhc
Confidence 56777788999997 788999999999999987522 233443 334444455555556666677777654432
Q ss_pred CCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEE-----------EEcC-CCCceEEEEeC--CEEEEE
Q 001349 886 NEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTK-----------LLNS-SKYPKCLALVQ--GKVYCG 951 (1094)
Q Consensus 886 ~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~-----------l~~~-~~~v~~l~~s~--~~l~sg 951 (1094)
. ....+... ..-..+. ++.-.--+.++.....+. -+.. .+.++++..++ +.|++|
T Consensus 125 G-~hy~~RIP---~~GRDm~-------y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~G 193 (703)
T KOG2321|consen 125 G-RHYRTRIP---KFGRDMK-------YHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACG 193 (703)
T ss_pred C-eeeeeecC---cCCcccc-------ccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEec
Confidence 2 11111111 1111111 111111111111111111 1222 35677777774 778999
Q ss_pred EcCCeEEEEECCCCceeEEeccceeecCCCC-----CeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecC--CC
Q 001349 952 CQDGAIQEIDLATGTFATIQTGHRKLLGKAN-----PVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT--LS 1024 (1094)
Q Consensus 952 s~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~-----~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~--~~ 1024 (1094)
+.+|.|..||.++......+.....+..|.+ .|+++.|+.++..++.|..+| .+.|||+++.+++..-.| ..
T Consensus 194 t~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G-~v~iyDLRa~~pl~~kdh~~e~ 272 (703)
T KOG2321|consen 194 TEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTG-SVLIYDLRASKPLLVKDHGYEL 272 (703)
T ss_pred ccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCC-cEEEEEcccCCceeecccCCcc
Confidence 9999999999998876655544444444443 499999999999999999997 999999999988877776 45
Q ss_pred CEEEEEEeCC---EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEE
Q 001349 1025 EVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAW 1091 (1094)
Q Consensus 1025 ~v~~l~~spd---~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iW 1091 (1094)
+|..+.|-+. -.+...+...++|||-.+|+....+. ....++.+|+-|++.+++++..++.+..|
T Consensus 273 pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiE--pt~~lND~C~~p~sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 273 PIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIE--PTSDLNDFCFVPGSGMFFTANESSKMHTY 340 (703)
T ss_pred ceeeecccccCCCceEEecchHHhhhcccccCCceeecc--ccCCcCceeeecCCceEEEecCCCcceeE
Confidence 6888888654 33444556789999999999998885 34469999999999999999998877655
No 225
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=2.7e-09 Score=126.92 Aligned_cols=231 Identities=9% Similarity=-0.041 Sum_probs=149.3
Q ss_pred CeEEEeCC-cceeecccCCCcEEEEEEeCC--EEEEEEC---CCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCE
Q 001349 796 SADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHS---DGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEM 869 (1094)
Q Consensus 796 ~I~vWd~~-~~~~~~~~h~~~V~~l~fspd--~LaSgs~---Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~ 869 (1094)
.|.+||.. .....+..|...+.+..|+|| .|+..+. +..|.+||+.++.. ..+..+.+.+....|+|||+.
T Consensus 183 ~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~---~~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 183 RLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR---ELVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred EEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE---EEeecCCCcccCcEECCCCCE
Confidence 67777876 334556678889999999997 6665543 46899999998843 334456667888999999987
Q ss_pred EE-EEeCCCc--EEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCC
Q 001349 870 LY-SGSLDKT--ARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQG 946 (1094)
Q Consensus 870 La-Sgs~Dgt--I~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~ 946 (1094)
|+ +.+.+|. |.+||+.++....+.. +....... .|+|||+.++..+..
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~~~Lt~--~~~~~~~~-------~~spDG~~i~f~s~~-------------------- 310 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTTTRLTD--SPAIDTSP-------SYSPDGSQIVFESDR-------------------- 310 (435)
T ss_pred EEEEEecCCCceEEEEECCCCceEEccC--CCCccCce-------eEcCCCCEEEEEECC--------------------
Confidence 75 5566655 7777888875433322 22222223 389999876433211
Q ss_pred EEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCC--CEEEEEECCCCeEEEEecCCC
Q 001349 947 KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG--AAVKMWSTSNYNMVGSLPTLS 1024 (1094)
Q Consensus 947 ~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg--~~I~iwd~~~~~~~~~~~~~~ 1024 (1094)
..+..|.+||+.++..... ..+...+....|+|++.+++..+.++ ..|.+||+.++. ...+....
T Consensus 311 -----~g~~~Iy~~d~~g~~~~~l-------t~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~~~ 377 (435)
T PRK05137 311 -----SGSPQLYVMNADGSNPRRI-------SFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTSGF 377 (435)
T ss_pred -----CCCCeEEEEECCCCCeEEe-------ecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccCCC
Confidence 0123678888876655322 22234456678999999888776543 368888876543 34444444
Q ss_pred CEEEEEEeCC--EEEEEEc-C-----CeEEEEECCCCcEEEEecccCCcceEEEEEcC
Q 001349 1025 EVRAMVVSSE--LVYLGCK-G-----GTVEIWDQKRQIRIETLQTGTSGKVQCMALDD 1074 (1094)
Q Consensus 1025 ~v~~l~~spd--~l~sgs~-d-----g~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Sp 1074 (1094)
.+....|+|| .++..+. . ..++++|+..+.. ..+. ..+.+...+|+|
T Consensus 378 ~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~--~~~~~~~p~Wsp 432 (435)
T PRK05137 378 LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP--TPGDASDPAWSP 432 (435)
T ss_pred CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc--CCCCccCcccCC
Confidence 5778899998 4444332 2 3688889876654 4443 234567778876
No 226
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=7.3e-10 Score=124.38 Aligned_cols=224 Identities=15% Similarity=0.275 Sum_probs=159.3
Q ss_pred ccCCCeEEEEEecCCCEEE-EEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEE
Q 001349 853 EHTKAVTGLAILQSGEMLY-SGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKL 931 (1094)
Q Consensus 853 ~H~~~V~sv~fspdg~~La-Sgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l 931 (1094)
+|....+.|..+|||+|+. ||...-.|++||+..-.++.-... ...+..+.. .+.|-..++....|.+|.+
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhl--Dae~V~fei------LsDD~SK~v~L~~DR~Ief 120 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHL--DAEVVDFEI------LSDDYSKSVFLQNDRTIEF 120 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecc--cccceeEEE------eccchhhheEeecCceeee
Confidence 5788889999999999764 566678899999987543322222 222222221 2233333333444444443
Q ss_pred Ec---------CCCCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEE
Q 001349 932 LN---------SSKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTS 1000 (1094)
Q Consensus 932 ~~---------~~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s 1000 (1094)
.. ....-+.+.++. --|++++....|+-+++..|..+ ..+......++++..++-..++++|+
T Consensus 121 Hak~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL------~P~~~~~~~lN~v~in~~hgLla~Gt 194 (703)
T KOG2321|consen 121 HAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFL------NPFETDSGELNVVSINEEHGLLACGT 194 (703)
T ss_pred hhhcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccc------cccccccccceeeeecCccceEEecc
Confidence 33 334445555542 23888888889999999999988 44445568899999999999999998
Q ss_pred CCCCEEEEEECCCCeEEEEecCC------------CCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcc
Q 001349 1001 LDGAAVKMWSTSNYNMVGSLPTL------------SEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGK 1066 (1094)
Q Consensus 1001 ~Dg~~I~iwd~~~~~~~~~~~~~------------~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~ 1066 (1094)
.+| .|..||.++...+.++... ..|+++.|+.+ .+++|+.+|.|.|||+++.+++..-..+..-+
T Consensus 195 ~~g-~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~p 273 (703)
T KOG2321|consen 195 EDG-VVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELP 273 (703)
T ss_pred cCc-eEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccc
Confidence 887 9999999988777766522 23999999997 79999999999999999999887765455558
Q ss_pred eEEEEEcCC--CCEEEEEeCCCcEEEEe
Q 001349 1067 VQCMALDDN--EEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1067 I~~l~~Spd--g~~L~sgs~DG~I~iWd 1092 (1094)
|..+.|.+. ++.++|. +...++|||
T Consensus 274 i~~l~~~~~~~q~~v~S~-Dk~~~kiWd 300 (703)
T KOG2321|consen 274 IKKLDWQDTDQQNKVVSM-DKRILKIWD 300 (703)
T ss_pred eeeecccccCCCceEEec-chHHhhhcc
Confidence 999999765 3556654 456899997
No 227
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.23 E-value=3e-09 Score=112.32 Aligned_cols=229 Identities=13% Similarity=0.189 Sum_probs=148.4
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEECCCCceE-EEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEc--
Q 001349 857 AVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIH-CVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN-- 933 (1094)
Q Consensus 857 ~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~-~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~-- 933 (1094)
...+++|+.|...++.|.++| .+||+.+.-+.. ........-.+..+-+..+.+++.-.|.. -...-..+.+||
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~--pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSR--PKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCC--CCCCCceEEEEecc
Confidence 345599999999999988887 899998753210 00111111111111111121222111110 000013455665
Q ss_pred ---------CCCCceEEEEeCCEEEEEEcCCeEEEEECCC-CceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCC
Q 001349 934 ---------SSKYPKCLALVQGKVYCGCQDGAIQEIDLAT-GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG 1003 (1094)
Q Consensus 934 ---------~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~-~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg 1003 (1094)
....|..+.+..++|++.- .+.|.+|...+ .+.+..+.. ......+.+++-+.+..+++.-+..-
T Consensus 84 k~~~i~el~f~~~I~~V~l~r~riVvvl-~~~I~VytF~~n~k~l~~~et----~~NPkGlC~~~~~~~k~~LafPg~k~ 158 (346)
T KOG2111|consen 84 KERCIIELSFNSEIKAVKLRRDRIVVVL-ENKIYVYTFPDNPKLLHVIET----RSNPKGLCSLCPTSNKSLLAFPGFKT 158 (346)
T ss_pred cCcEEEEEEeccceeeEEEcCCeEEEEe-cCeEEEEEcCCChhheeeeec----ccCCCceEeecCCCCceEEEcCCCcc
Confidence 3467888888888877764 57899998873 333322211 11122344554455566666655544
Q ss_pred CEEEEEECCCCeE--EEEe-cCCCCEEEEEEeCC--EEEEEEcCCe-EEEEECCCCcEEEEecccCC-cceEEEEEcCCC
Q 001349 1004 AAVKMWSTSNYNM--VGSL-PTLSEVRAMVVSSE--LVYLGCKGGT-VEIWDQKRQIRIETLQTGTS-GKVQCMALDDNE 1076 (1094)
Q Consensus 1004 ~~I~iwd~~~~~~--~~~~-~~~~~v~~l~~spd--~l~sgs~dg~-I~vwd~~t~~~~~~l~~~h~-~~I~~l~~Spdg 1076 (1094)
+.|+|-|+...+. ...+ .|.+.|.+++.+-+ .++++|..|+ |||||..+|+++..+..|.. ..|.+++||||+
T Consensus 159 GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~ 238 (346)
T KOG2111|consen 159 GQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNS 238 (346)
T ss_pred ceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCc
Confidence 5999999976554 2333 49999999999877 8999999987 79999999999999976643 379999999999
Q ss_pred CEEEEEeCCCcEEEEeC
Q 001349 1077 EFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1077 ~~L~sgs~DG~I~iWdl 1093 (1094)
.+|+++|+.|+|+||.+
T Consensus 239 s~LavsSdKgTlHiF~l 255 (346)
T KOG2111|consen 239 SWLAVSSDKGTLHIFSL 255 (346)
T ss_pred cEEEEEcCCCeEEEEEe
Confidence 99999999999999976
No 228
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=2.3e-09 Score=127.01 Aligned_cols=232 Identities=12% Similarity=0.078 Sum_probs=141.0
Q ss_pred CCeEEEeCC-cceeecccCCCcEEEEEEeCC--EEEEEECC---CeEEEEecCCCcceeEEEecccCCCeEEEEEecCCC
Q 001349 795 SSADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSD---GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGE 868 (1094)
Q Consensus 795 g~I~vWd~~-~~~~~~~~h~~~V~~l~fspd--~LaSgs~D---g~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~ 868 (1094)
..|.+||.+ .....+..+...+.+.+|+|| .|+..+.+ ..|.+||+.++....+ ....+.+....|+|||+
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l---~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV---ANFKGSNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe---ecCCCCccceEECCCCC
Confidence 356666665 233445577888999999997 66655532 4699999998843333 33345567899999999
Q ss_pred EEE-EEeCCCcEEEEEC--CCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC
Q 001349 869 MLY-SGSLDKTARVWSI--GNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ 945 (1094)
Q Consensus 869 ~La-Sgs~DgtI~vWdi--~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~ 945 (1094)
.|+ +.+.+|...||.+ .++....+ ..+....... .|+|||+.++..+
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~~~~l--t~~~~~~~~~-------~wSpDG~~l~f~s--------------------- 302 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSGLRRL--TQSSGIDTEP-------FFSPDGRSIYFTS--------------------- 302 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCCcEEC--CCCCCCCcCe-------EEcCCCCEEEEEe---------------------
Confidence 886 5677887777654 44432222 1122222222 3999998754322
Q ss_pred CEEEEEEcCCeEEEE--ECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCC--EEEEEECCCCeEEEEec
Q 001349 946 GKVYCGCQDGAIQEI--DLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGA--AVKMWSTSNYNMVGSLP 1021 (1094)
Q Consensus 946 ~~l~sgs~Dg~I~iw--Dl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~--~I~iwd~~~~~~~~~~~ 1021 (1094)
..+|...+| |..++..... .+. ........|+|++.+++..+.+++ .|.+||+.++... .+.
T Consensus 303 ------~~~g~~~Iy~~~~~~g~~~~l-----t~~--g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt 368 (427)
T PRK02889 303 ------DRGGAPQIYRMPASGGAAQRV-----TFT--GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALT 368 (427)
T ss_pred ------cCCCCcEEEEEECCCCceEEE-----ecC--CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-Ecc
Confidence 223444444 4444443211 111 122345789999999887765543 6999999887654 344
Q ss_pred CCCCEEEEEEeCC--EEEEEEc-CC--eEEEEECCCCcEEEEecccCCcceEEEEEcCC
Q 001349 1022 TLSEVRAMVVSSE--LVYLGCK-GG--TVEIWDQKRQIRIETLQTGTSGKVQCMALDDN 1075 (1094)
Q Consensus 1022 ~~~~v~~l~~spd--~l~sgs~-dg--~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spd 1075 (1094)
.........|+|| .++.++. .| .+++.+. ++.....+ ..+.+.+...+|+|-
T Consensus 369 ~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l-~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 369 DTTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRL-SVQGGDVREPSWGPF 425 (427)
T ss_pred CCCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEe-ecCCCCCCCCccCCC
Confidence 3334567899998 4555443 33 3566666 45555555 346667888889873
No 229
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.21 E-value=1.2e-09 Score=118.00 Aligned_cols=252 Identities=9% Similarity=0.129 Sum_probs=174.6
Q ss_pred EEEEeeCCCCeEEEeCCcc--------eeecccCCCcEEEEEEeCCEEEEEECCCeEEEEecCCCc--ceeEEEecccCC
Q 001349 787 KVLSNGHDSSADFWNHREL--------VHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSI--LHLIQQIREHTK 856 (1094)
Q Consensus 787 ~l~s~s~dg~I~vWd~~~~--------~~~~~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~--~~~~~~l~~H~~ 856 (1094)
.+...+.+..+..+.+.+. .......+++|..+......|++|-.+|.+.+|....+. ...+..+..| .
T Consensus 71 vl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~ 149 (412)
T KOG3881|consen 71 VLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-P 149 (412)
T ss_pred EeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEEecCCcEEEEeccCCccccccceeeecC-C
Confidence 4444445666665555411 113345578888888888899999999999999988442 1233444333 4
Q ss_pred CeEEEEEecC-CCEEEEEeCC--CcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEc
Q 001349 857 AVTGLAILQS-GEMLYSGSLD--KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN 933 (1094)
Q Consensus 857 ~V~sv~fspd-g~~LaSgs~D--gtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~ 933 (1094)
.+..|.-++. ..++++||.. ..++|||+.+.+ +.......+..-..+ .+.+|
T Consensus 150 g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~-qiw~aKNvpnD~L~L-----------------------rVPvW- 204 (412)
T KOG3881|consen 150 GLYDVRQTDTDPYIVATGGKENINELKIWDLEQSK-QIWSAKNVPNDRLGL-----------------------RVPVW- 204 (412)
T ss_pred ceeeeccCCCCCceEecCchhcccceeeeecccce-eeeeccCCCCccccc-----------------------eeeee-
Confidence 5666776764 4566668888 889999999862 322222211111111 12222
Q ss_pred CCCCceEEEEeC----CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEE
Q 001349 934 SSKYPKCLALVQ----GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMW 1009 (1094)
Q Consensus 934 ~~~~v~~l~~s~----~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iw 1009 (1094)
++.+.|-+ ..+++++.-+.+++||++.++... ..+.--..+++++...|++.++.++..-| .+..|
T Consensus 205 ----~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV-----~~fd~~E~~is~~~l~p~gn~Iy~gn~~g-~l~~F 274 (412)
T KOG3881|consen 205 ----ITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPV-----AQFDFLENPISSTGLTPSGNFIYTGNTKG-QLAKF 274 (412)
T ss_pred ----eccceecCCCCCceEEEEecceeEEEecCcccCcce-----eEeccccCcceeeeecCCCcEEEEecccc-hhhee
Confidence 23344433 359999999999999999775432 23333467899999999999999998876 99999
Q ss_pred ECCCCeEEEE-ec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCC
Q 001349 1010 STSNYNMVGS-LP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNE 1076 (1094)
Q Consensus 1010 d~~~~~~~~~-~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg 1076 (1094)
|++.++.... +. -.+.++++..+|. ++++++-|..|||+|+.+.+++.... -...++++.+.++-
T Consensus 275 D~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY--vKs~lt~il~~~~~ 343 (412)
T KOG3881|consen 275 DLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY--VKSRLTFILLRDDV 343 (412)
T ss_pred cccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh--hhccccEEEecCCc
Confidence 9999998877 55 4688999999999 89999999999999999977766553 34467888776543
No 230
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.20 E-value=2.3e-11 Score=133.29 Aligned_cols=188 Identities=18% Similarity=0.268 Sum_probs=151.7
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCC
Q 001349 858 VTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKY 937 (1094)
Q Consensus 858 V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~ 937 (1094)
-..+.++.+|.+++.|+..|.|-.+|+.++.+.+-. .....|.++. |..+.+
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei--~v~Etv~Dv~-------~LHneq------------------- 183 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEI--NVMETVRDVT-------FLHNEQ------------------- 183 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeee--ehhhhhhhhh-------hhcchH-------------------
Confidence 456889999999999999999999999998644332 2244555554 332222
Q ss_pred ceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEE
Q 001349 938 PKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMV 1017 (1094)
Q Consensus 938 v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~ 1017 (1094)
++.......+++||- .|..+.. +..| ..|..+.|-|...++++++..| .++--|+.+|+.+
T Consensus 184 ----------~~AVAQK~y~yvYD~-~GtElHC------lk~~-~~v~rLeFLPyHfLL~~~~~~G-~L~Y~DVS~GklV 244 (545)
T KOG1272|consen 184 ----------FFAVAQKKYVYVYDN-NGTELHC------LKRH-IRVARLEFLPYHFLLVAASEAG-FLKYQDVSTGKLV 244 (545)
T ss_pred ----------HHHhhhhceEEEecC-CCcEEee------hhhc-CchhhhcccchhheeeecccCC-ceEEEeechhhhh
Confidence 444456678889984 4665533 2222 5788999999999999998886 9999999999999
Q ss_pred EEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1018 GSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1018 ~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
..+. ..+.+..|.-+|- .+-+|..+|+|.+|...+.+++..+. .|.++|.++++.++|.+++|.|.|..++|||+
T Consensus 245 a~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiL-cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDl 322 (545)
T KOG1272|consen 245 ASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKIL-CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDL 322 (545)
T ss_pred HHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHH-hcCCCcceEEECCCCcEEeecccccceeEeee
Confidence 9888 5677888888886 78889999999999999999888884 79999999999999999999999999999997
No 231
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.20 E-value=7e-10 Score=123.77 Aligned_cols=210 Identities=15% Similarity=0.203 Sum_probs=143.9
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEE--Ee--cccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEc
Q 001349 858 VTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCV--QV--HDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN 933 (1094)
Q Consensus 858 V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~--~~--~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~ 933 (1094)
+....++-.|++|+-.-. ..+.+|+.+.+...+. .. +....+.. -.+ +...-.+.|-.+.++...|.+.+++
T Consensus 126 ~~~~~~~~~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~gt~P~c-Hdf--n~~~a~~~g~dllIGf~tGqvq~id 201 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKGTSPTC-HDF--NSFTATPKGLDLLIGFTTGQVQLID 201 (636)
T ss_pred eeeccccCCCCEEEEecC-CeEEEEEccCcchhccchhhhcccCCCCce-ecc--cccccCCCCcceEEeeccCceEEec
Confidence 444444445666654333 3588898885431111 11 11111111 110 0111356677778888888887776
Q ss_pred C----------------CCCceEEEEeC---CEEEEEEcCCeEEEEECCC--------------CceeEEec--------
Q 001349 934 S----------------SKYPKCLALVQ---GKVYCGCQDGAIQEIDLAT--------------GTFATIQT-------- 972 (1094)
Q Consensus 934 ~----------------~~~v~~l~~s~---~~l~sgs~Dg~I~iwDl~~--------------~~~~~~~~-------- 972 (1094)
. ...++|+.|.+ +.++++..+|.+.+||... +....+..
T Consensus 202 p~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rN 281 (636)
T KOG2394|consen 202 PINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRN 281 (636)
T ss_pred chhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCC
Confidence 4 35789999975 4688899999999997631 11111100
Q ss_pred cceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEE
Q 001349 973 GHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWD 1049 (1094)
Q Consensus 973 ~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd 1049 (1094)
+...+.--...|+.++|++|+.++|+.+.|| .+||||..+.+++..++ --+...|++|||| +|++|++|.-|.||.
T Consensus 282 Pv~~w~~~~g~in~f~FS~DG~~LA~VSqDG-fLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwS 360 (636)
T KOG2394|consen 282 PVARWHIGEGSINEFAFSPDGKYLATVSQDG-FLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWS 360 (636)
T ss_pred ccceeEeccccccceeEcCCCceEEEEecCc-eEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEE
Confidence 0011222235789999999999999999997 99999999887776665 3577899999999 999999999999999
Q ss_pred CCCCcEEEEecccCCcceEEEEEc
Q 001349 1050 QKRQIRIETLQTGTSGKVQCMALD 1073 (1094)
Q Consensus 1050 ~~t~~~~~~l~~~h~~~I~~l~~S 1073 (1094)
+...+.+..= .||..+|+.|+|.
T Consensus 361 f~erRVVARG-qGHkSWVs~VaFD 383 (636)
T KOG2394|consen 361 FEERRVVARG-QGHKSWVSVVAFD 383 (636)
T ss_pred eccceEEEec-cccccceeeEeec
Confidence 9999998888 5999999999998
No 232
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.19 E-value=6.5e-10 Score=123.55 Aligned_cols=193 Identities=11% Similarity=0.093 Sum_probs=146.2
Q ss_pred CcEEEEeeCCCCeEEEeCC-cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEE
Q 001349 785 MVKVLSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGL 861 (1094)
Q Consensus 785 ~~~l~s~s~dg~I~vWd~~-~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv 861 (1094)
...++.++.||.+.+-+-. ........|.+.|.|-.|+|| -|+|++.||.|++|.-.+. ...++.....+|.|+
T Consensus 75 ~d~~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM---LRStl~Q~~~~v~c~ 151 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM---LRSTVVQNEESIRCA 151 (737)
T ss_pred cceEEEEcCCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch---HHHHHhhcCceeEEE
Confidence 4578889999999988766 555677889999999999998 8999999999999986543 344455567889999
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC-------
Q 001349 862 AILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS------- 934 (1094)
Q Consensus 862 ~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~------- 934 (1094)
+|.|+++.++-+.. +.+.|=-+..+ .+.+....|.+-|.++. |++.+..+++++.|-..++||.
T Consensus 152 ~W~p~S~~vl~c~g-~h~~IKpL~~n-~k~i~WkAHDGiiL~~~-------W~~~s~lI~sgGED~kfKvWD~~G~~Lf~ 222 (737)
T KOG1524|consen 152 RWAPNSNSIVFCQG-GHISIKPLAAN-SKIIRWRAHDGLVLSLS-------WSTQSNIIASGGEDFRFKIWDAQGANLFT 222 (737)
T ss_pred EECCCCCceEEecC-CeEEEeecccc-cceeEEeccCcEEEEee-------cCccccceeecCCceeEEeecccCccccc
Confidence 99998765554433 34555444432 25666677888888888 8999999999999999999985
Q ss_pred ----CCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEE
Q 001349 935 ----SKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAV 1006 (1094)
Q Consensus 935 ----~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I 1006 (1094)
.-.|++++|+++.++....-++.++=.+ ..+.|..++|++||..++++...|..+
T Consensus 223 S~~~ey~ITSva~npd~~~~v~S~nt~R~~~p-----------------~~GSifnlsWS~DGTQ~a~gt~~G~v~ 281 (737)
T KOG1524|consen 223 SAAEEYAITSVAFNPEKDYLLWSYNTARFSSP-----------------RVGSIFNLSWSADGTQATCGTSTGQLI 281 (737)
T ss_pred CChhccceeeeeeccccceeeeeeeeeeecCC-----------------CccceEEEEEcCCCceeeccccCceEE
Confidence 3468999999887655444445552221 235788999999999999888777333
No 233
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.18 E-value=2.7e-09 Score=126.45 Aligned_cols=205 Identities=16% Similarity=0.101 Sum_probs=130.0
Q ss_pred CeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCC---CcEEEEECCCCceEEEEecccCccceeeeecCc
Q 001349 833 GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD---KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNS 909 (1094)
Q Consensus 833 g~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~D---gtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~ 909 (1094)
..|.+||..+. ..+.+..+...+.+.+|+|||+.|+.++.+ ..|.+||+.+++...+... ...+...
T Consensus 176 ~~L~~~D~dG~---~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~--~g~~~~~----- 245 (427)
T PRK02889 176 YQLQISDADGQ---NAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANF--KGSNSAP----- 245 (427)
T ss_pred cEEEEECCCCC---CceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecC--CCCccce-----
Confidence 46777887554 334455678889999999999999887753 3599999998864443322 2233333
Q ss_pred eEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEE--ECCCCceeEEeccceeecCCCCCeEEE
Q 001349 910 ILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEI--DLATGTFATIQTGHRKLLGKANPVHAL 987 (1094)
Q Consensus 910 ~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iw--Dl~~~~~~~~~~~~~~~~~h~~~V~sl 987 (1094)
.|+|||+.++. +.+.+|...+| |+.++.. ..+..+.......
T Consensus 246 --~~SPDG~~la~---------------------------~~~~~g~~~Iy~~d~~~~~~-------~~lt~~~~~~~~~ 289 (427)
T PRK02889 246 --AWSPDGRTLAV---------------------------ALSRDGNSQIYTVNADGSGL-------RRLTQSSGIDTEP 289 (427)
T ss_pred --EECCCCCEEEE---------------------------EEccCCCceEEEEECCCCCc-------EECCCCCCCCcCe
Confidence 39999987532 33445554444 5554443 2333344445677
Q ss_pred EEeCCccEEEEEECCCCEEEEEEC--CCCeEEEEecCCCCEEEEEEeCC--EEEEEEcCC---eEEEEECCCCcEEEEec
Q 001349 988 QVHNGLVYTASTSLDGAAVKMWST--SNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGG---TVEIWDQKRQIRIETLQ 1060 (1094)
Q Consensus 988 ~fs~~~~~las~s~Dg~~I~iwd~--~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg---~I~vwd~~t~~~~~~l~ 1060 (1094)
.|+||+..++..+..++...+|.+ .++................|+|| +++..+.++ .|++||+.+++... +.
T Consensus 290 ~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt 368 (427)
T PRK02889 290 FFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LT 368 (427)
T ss_pred EEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-cc
Confidence 899999988766654345566654 44443222223333446789988 666555443 69999999887543 32
Q ss_pred ccCCcceEEEEEcCCCCEEEEEeCCC
Q 001349 1061 TGTSGKVQCMALDDNEEFLVIGTSDG 1086 (1094)
Q Consensus 1061 ~~h~~~I~~l~~Spdg~~L~sgs~DG 1086 (1094)
.+ .......|+|||+.|+.++.++
T Consensus 369 ~~--~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 369 DT--TRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred CC--CCccCceECCCCCEEEEEEecC
Confidence 22 2346789999999988777554
No 234
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.17 E-value=2.4e-10 Score=126.19 Aligned_cols=247 Identities=15% Similarity=0.190 Sum_probs=175.5
Q ss_pred eeecccCCCcEEEEEEeC--CEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEec--CCCEEEEEeCCCcEEE
Q 001349 806 VHVDSSENGKVLSIACFR--DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQ--SGEMLYSGSLDKTARV 881 (1094)
Q Consensus 806 ~~~~~~h~~~V~~l~fsp--d~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fsp--dg~~LaSgs~DgtI~v 881 (1094)
...+..|.|.|..|.|+. +.++||+.|..|.+||...+. ..+.-..+|...|..-.|-| +...+++++.||.|++
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~-~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGS-PKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccC-cccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 356678999999999997 599999999999999998874 33444568999999999988 4568999999999998
Q ss_pred EECCCCc-eE-EEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEE
Q 001349 882 WSIGNEE-IH-CVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQE 959 (1094)
Q Consensus 882 Wdi~~~~-~~-~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~i 959 (1094)
=.+.... .. ......|.++|..++ ..|+. +..+++++.|+.+.-
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhkla-------v~p~s---------------------------p~~f~S~geD~~v~~ 259 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLA-------VEPDS---------------------------PKPFLSCGEDAVVFH 259 (559)
T ss_pred eeeccccceecceecccccCccceee-------ecCCC---------------------------CCcccccccccceee
Confidence 7764322 11 233344555555555 33332 235899999999999
Q ss_pred EECCCCceeEEeccceeecCCCC---CeEEEEEeCCcc-EEEEEECCCCEEEEEECCCCe------EEEEec-------C
Q 001349 960 IDLATGTFATIQTGHRKLLGKAN---PVHALQVHNGLV-YTASTSLDGAAVKMWSTSNYN------MVGSLP-------T 1022 (1094)
Q Consensus 960 wDl~~~~~~~~~~~~~~~~~h~~---~V~sl~fs~~~~-~las~s~Dg~~I~iwd~~~~~------~~~~~~-------~ 1022 (1094)
+|++++.....+. ....+.. ..+.++.+|... .+++++.|. .+++||.+.-. .+.++. .
T Consensus 260 ~Dlr~~~pa~~~~---cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dq-f~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~ 335 (559)
T KOG1334|consen 260 IDLRQDVPAEKFV---CREADEKERVGLYTIAVDPRNTNEFAVGGSDQ-FARVYDQRRIDKEENNGVLDKFCPHHLVEDD 335 (559)
T ss_pred eeeccCCccceee---eeccCCccceeeeeEecCCCCccccccCChhh-hhhhhcccchhhccccchhhhcCCccccccC
Confidence 9999887654433 1122333 467788887554 677777775 99999987522 123332 2
Q ss_pred CCCEEEEEEeCC--EEEEEEcCCeEEEEECCC--C----------cEEEE-ecccCCc--ceEEEEE-cCCCCEEEEEeC
Q 001349 1023 LSEVRAMVVSSE--LVYLGCKGGTVEIWDQKR--Q----------IRIET-LQTGTSG--KVQCMAL-DDNEEFLVIGTS 1084 (1094)
Q Consensus 1023 ~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t--~----------~~~~~-l~~~h~~--~I~~l~~-Spdg~~L~sgs~ 1084 (1094)
...|++++++.+ -+.++..|-.|+++.... | ..+.. + .||.. .|.++-| -|...++++|++
T Consensus 336 ~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vY-KGHrN~~TVKgVNFfGPrsEyVvSGSD 414 (559)
T KOG1334|consen 336 PVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVY-KGHRNSRTVKGVNFFGPRSEYVVSGSD 414 (559)
T ss_pred cccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhh-cccccccccceeeeccCccceEEecCc
Confidence 456999999966 466667788899996432 2 22333 4 47765 5767754 678899999999
Q ss_pred CCcEEEEe
Q 001349 1085 DGRIQAWG 1092 (1094)
Q Consensus 1085 DG~I~iWd 1092 (1094)
=|.|.||+
T Consensus 415 CGhIFiW~ 422 (559)
T KOG1334|consen 415 CGHIFIWD 422 (559)
T ss_pred cceEEEEe
Confidence 99999997
No 235
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.17 E-value=2.1e-11 Score=137.16 Aligned_cols=72 Identities=22% Similarity=0.505 Sum_probs=64.2
Q ss_pred CCCCceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHHHHhCC
Q 001349 159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNP 232 (1094)
Q Consensus 159 ~~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~~~~~ 232 (1094)
.+...+.||||.++|.+||+++|||+||..||..|+.. ...||.|+..+....+. +|..|.++|+.|+...+
T Consensus 22 ~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr-~N~~L~~iVe~~~~~R~ 93 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLR-SNWLVSEIVESFKNLRP 93 (397)
T ss_pred ccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCc-cchHHHHHHHHHHHhhH
Confidence 45568999999999999999999999999999999986 44799999999888886 99999999999986543
No 236
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.16 E-value=1.8e-11 Score=122.50 Aligned_cols=59 Identities=25% Similarity=0.480 Sum_probs=50.4
Q ss_pred CCCceeccCccccccCcEEcCCcccccHHhHHHHHHh---------------CCCCCCCCCcCCCCCCCCChhHH
Q 001349 160 PPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIER---------------GNSSCPITRQKLSSTKLPKTNYV 219 (1094)
Q Consensus 160 ~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~---------------~~~~CP~c~~~~~~~~~~~pN~~ 219 (1094)
..+++.||||++.++|||+++|||.||+.||.+|+.. +...||.|+..++...++ |.+.
T Consensus 15 ~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~Lv-Piyg 88 (193)
T PLN03208 15 SGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLV-PIYG 88 (193)
T ss_pred CCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEE-Eeec
Confidence 3458999999999999999999999999999999853 134699999999988886 7653
No 237
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.15 E-value=2.1e-10 Score=127.61 Aligned_cols=122 Identities=18% Similarity=0.237 Sum_probs=105.3
Q ss_pred HHHHHHhhhccccccccccCcEEEEeeCCCCeEEEeCC---cceeecccCCCcEEEEEEeC---C-EEEEEECCCeEEEE
Q 001349 766 KDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFR---D-KIFSGHSDGTIKVW 838 (1094)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~---~~~~~~~~h~~~V~~l~fsp---d-~LaSgs~Dg~I~vW 838 (1094)
+..+.+|...++...+..+|..+++|+.|-.+.|||.- ....+-.+|.+.|.++.|-| | .++||..|..|+++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 35567888899999999999999999999999999986 33456679999999999998 3 99999999999999
Q ss_pred ecCC--------CcceeEEEecccCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCC
Q 001349 839 TGRG--------SILHLIQQIREHTKAVTGLAILQSG-EMLYSGSLDKTARVWSIGNE 887 (1094)
Q Consensus 839 d~~t--------~~~~~~~~l~~H~~~V~sv~fspdg-~~LaSgs~DgtI~vWdi~~~ 887 (1094)
|+.. +.......+..|+..|..++..|++ +.+.+++.||+|+-+|++..
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREp 180 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREP 180 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCC
Confidence 9974 1224556678899999999999987 89999999999999999874
No 238
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.15 E-value=1.7e-09 Score=115.40 Aligned_cols=194 Identities=15% Similarity=0.247 Sum_probs=138.0
Q ss_pred CCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEec-ccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCc
Q 001349 813 NGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIR-EHTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEE 888 (1094)
Q Consensus 813 ~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~-~H~~~V~sv~fsp-dg~~LaSgs~DgtI~vWdi~~~~ 888 (1094)
+..+..++|++. .++++..|-+|++||-.... ...++ .....|++++|-| .+.-|+.|+..| |.+|.....-
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~---pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tl 173 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTC---PTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTL 173 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCC---CceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccc
Confidence 345667888885 78899999999999987642 22222 2456799999999 456788888765 8999876521
Q ss_pred eEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCcee
Q 001349 889 IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFA 968 (1094)
Q Consensus 889 ~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~ 968 (1094)
....+ ..+...+...+
T Consensus 174 -------n~~r~------------------------------------------------~~~~s~~~~qv--------- 189 (445)
T KOG2139|consen 174 -------NANRN------------------------------------------------IRMMSTHHLQV--------- 189 (445)
T ss_pred -------ccccc------------------------------------------------cccccccchhh---------
Confidence 00000 00001111111
Q ss_pred EEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeE
Q 001349 969 TIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTV 1045 (1094)
Q Consensus 969 ~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I 1045 (1094)
....|| .+|+++.|.+|+..+++++.++..|.|||..++..+.-.. +.+.++-+.|||| ++++++-|+..
T Consensus 190 ------l~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davf 262 (445)
T KOG2139|consen 190 ------LQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVF 262 (445)
T ss_pred ------eeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEeccccee
Confidence 122345 6899999999999999999999999999999988776653 6788999999998 89999999999
Q ss_pred EEEECC-CCcEEEEecccCCcceEEEEEcCCCCEEEEEe
Q 001349 1046 EIWDQK-RQIRIETLQTGTSGKVQCMALDDNEEFLVIGT 1083 (1094)
Q Consensus 1046 ~vwd~~-t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs 1083 (1094)
++|+.. +.....-. . ..+.|...+|+|+|.+|+.+.
T Consensus 263 rlw~e~q~wt~erw~-l-gsgrvqtacWspcGsfLLf~~ 299 (445)
T KOG2139|consen 263 RLWQENQSWTKERWI-L-GSGRVQTACWSPCGSFLLFAC 299 (445)
T ss_pred eeehhcccceeccee-c-cCCceeeeeecCCCCEEEEEE
Confidence 999544 33333333 2 345899999999998876544
No 239
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.14 E-value=7.3e-08 Score=112.61 Aligned_cols=287 Identities=12% Similarity=0.107 Sum_probs=171.6
Q ss_pred cCcEEEEeeCCCCeEEEeCCcceee--cccCCCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEE
Q 001349 784 EMVKVLSNGHDSSADFWNHRELVHV--DSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGL 861 (1094)
Q Consensus 784 d~~~l~s~s~dg~I~vWd~~~~~~~--~~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv 861 (1094)
.+.+++.++.+|.+.-+|..+.... ...............+.++.++.+|.+..||..+| +.+...... +.+.+.
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG--~~~W~~~~~-~~~~~~ 140 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDG--KELWRAKLS-SEVLSP 140 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCC--cEeeeeccC-ceeecC
Confidence 4678888888999998987633222 22222222234445568889999999999999998 555554322 222211
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCcccee------eeecCceEEEe-eCCCeEEEEEeCCeEEEEcC
Q 001349 862 AILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQN------LAVSNSILCFI-PQGAGIKVHLRNGKTKLLNS 934 (1094)
Q Consensus 862 ~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~------v~~~~~~~~fs-pdg~~l~~~~~~g~i~l~~~ 934 (1094)
-.. .+..++.++.||.+..||..+|+..-.. ....+... .......+.+. .+|...+....+|.. +|..
T Consensus 141 p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~--~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~-~W~~ 216 (377)
T TIGR03300 141 PLV-ANGLVVVRTNDGRLTALDAATGERLWTY--SRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQP-LWEQ 216 (377)
T ss_pred CEE-ECCEEEEECCCCeEEEEEcCCCceeeEE--ccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCE-eeee
Confidence 111 3557777888999999999998632221 11111110 01111111121 223322222233432 3321
Q ss_pred CC--------------CceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEE
Q 001349 935 SK--------------YPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTS 1000 (1094)
Q Consensus 935 ~~--------------~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s 1000 (1094)
.. ......+.++.+++++.+|.+..||..+|+...... .. .........+. +..++
T Consensus 217 ~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~----~~----~~~~p~~~~~~--vyv~~ 286 (377)
T TIGR03300 217 RVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD----AS----SYQGPAVDDNR--LYVTD 286 (377)
T ss_pred ccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec----cC----CccCceEeCCE--EEEEC
Confidence 10 011223456789999999999999999998765332 11 11223333333 33344
Q ss_pred CCCCEEEEEECCCCeEEEEec--CCCCEEEEEEeCCEEEEEEcCCeEEEEECCCCcEEEEecccCCcce-EEEEEcCCCC
Q 001349 1001 LDGAAVKMWSTSNYNMVGSLP--TLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKV-QCMALDDNEE 1077 (1094)
Q Consensus 1001 ~Dg~~I~iwd~~~~~~~~~~~--~~~~v~~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I-~~l~~Spdg~ 1077 (1094)
.+| .+..+|..+++.+.... ......+..+..+.+++++.+|.|++||..+|+.+..++ .+...+ .+.++. + .
T Consensus 287 ~~G-~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~-~~~~~~~~sp~~~-~-~ 362 (377)
T TIGR03300 287 ADG-VVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSFVARLK-TDGSGIASPPVVV-G-D 362 (377)
T ss_pred CCC-eEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCCCEEEEEE-cCCCccccCCEEE-C-C
Confidence 565 99999999998887663 223344455567799999999999999999999998885 333233 333333 3 4
Q ss_pred EEEEEeCCCcEEEE
Q 001349 1078 FLVIGTSDGRIQAW 1091 (1094)
Q Consensus 1078 ~L~sgs~DG~I~iW 1091 (1094)
.|+.++.||.|+.|
T Consensus 363 ~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 363 GLLVQTRDGDLYAF 376 (377)
T ss_pred EEEEEeCCceEEEe
Confidence 58889999999876
No 240
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.11 E-value=3.8e-09 Score=112.32 Aligned_cols=313 Identities=15% Similarity=0.182 Sum_probs=192.0
Q ss_pred HhhhccccccccccCcEEEEeeCCCCeEEEeCCccee----ecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCC-
Q 001349 771 GLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRELVH----VDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGS- 843 (1094)
Q Consensus 771 ~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~~~~----~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~- 843 (1094)
++...+.-.-+.+-..-+++.+.|.+++||--....+ +......+++++.+.++ .|+.|-..|++.-+.+...
T Consensus 22 G~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedf 101 (404)
T KOG1409|consen 22 GSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDF 101 (404)
T ss_pred CchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhh
Confidence 3333333334444455788999999999996542222 22334678999999987 8999999999998865431
Q ss_pred -cceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCC--CeE
Q 001349 844 -ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQG--AGI 920 (1094)
Q Consensus 844 -~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg--~~l 920 (1094)
+....+.+..|...|..+.|+....++++.+.|..+.--..+.+.. +..+....+-....+.-. ..|.-|- +..
T Consensus 102 nkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~--lg~Y~~~~~~t~~~~d~~-~~fvGd~~gqvt 178 (404)
T KOG1409|consen 102 NKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNR--LGGYNFETPASALQFDAL-YAFVGDHSGQIT 178 (404)
T ss_pred hhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCc--ccceEeeccCCCCceeeE-EEEecccccceE
Confidence 2256677889999999999999999999999998765444444421 000000000000000000 1121111 100
Q ss_pred EEEEeC---C-eEEEEcCCCCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCcc
Q 001349 921 KVHLRN---G-KTKLLNSSKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLV 994 (1094)
Q Consensus 921 ~~~~~~---g-~i~l~~~~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~ 994 (1094)
...... + ..++-.+...+.++.+.+ +.+++|..|..|.+||+..++... ....+|...|..+..-+-..
T Consensus 179 ~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~-----~el~gh~~kV~~l~~~~~t~ 253 (404)
T KOG1409|consen 179 MLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTA-----YELQGHNDKVQALSYAQHTR 253 (404)
T ss_pred EEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCccee-----eeeccchhhhhhhhhhhhhe
Confidence 000000 1 112234567889999985 569999999999999998766543 46678999999998888888
Q ss_pred EEEEEECCCCEEEEEECCCCeEEE----------Eec--------------------C----CCCEEEEEEeCC--EEEE
Q 001349 995 YTASTSLDGAAVKMWSTSNYNMVG----------SLP--------------------T----LSEVRAMVVSSE--LVYL 1038 (1094)
Q Consensus 995 ~las~s~Dg~~I~iwd~~~~~~~~----------~~~--------------------~----~~~v~~l~~spd--~l~s 1038 (1094)
.+.+++.|| .|.+||++...... ... | -+...+...+.+ ...+
T Consensus 254 ~l~S~~edg-~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~ 332 (404)
T KOG1409|consen 254 QLISCGEDG-GIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPT 332 (404)
T ss_pred eeeeccCCC-eEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCcccccc
Confidence 889999997 89999986432110 000 0 011111111111 1112
Q ss_pred EEcCCeEEEEE--------CCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1039 GCKGGTVEIWD--------QKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1039 gs~dg~I~vwd--------~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
-+..-.+|+-| ... .++..+...|. .|+.+.+..+-..|+|+|.|..|+|||+.
T Consensus 333 mg~e~~vR~~~~c~~~i~~~~~-t~LA~phei~t-gItamhlqetlglLvTsG~~Rvi~iwd~~ 394 (404)
T KOG1409|consen 333 MGFEFSVRVCDSCYPTIKDEER-TPLAIPHEIKT-GITAMHLQETLGLLVTSGTDRVIKIWDVR 394 (404)
T ss_pred ccceeEEEEecccchhhhcCCC-Ccccccccccc-ceeEEEhhhhccceeecCCceEEEEEech
Confidence 22222344443 322 33444433333 69999998888999999999999999974
No 241
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.09 E-value=2.7e-08 Score=114.59 Aligned_cols=251 Identities=12% Similarity=0.145 Sum_probs=155.3
Q ss_pred EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceee
Q 001349 825 KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNL 904 (1094)
Q Consensus 825 ~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v 904 (1094)
++++-..+|.|.|.|..+. +.+..+......-..+.|+|||+++++++.||.|.+||+.+++ .+..........++
T Consensus 8 ~~V~~~~~~~v~viD~~t~--~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~--~v~~i~~G~~~~~i 83 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATN--KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK--VVATIKVGGNPRGI 83 (369)
T ss_dssp EEEEEGGGTEEEEEETTT---SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS--EEEEEE-SSEEEEE
T ss_pred EEEEecCCCEEEEEECCCC--eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCccc--EEEEEecCCCcceE
Confidence 3456677899999999998 7888887654444557899999999999999999999999985 33333333344555
Q ss_pred eecCceEEEeeCCCeEEEEE-eCCeEEEEcCCC-------------------CceEEEEeC--CEEEEE-EcCCeEEEEE
Q 001349 905 AVSNSILCFIPQGAGIKVHL-RNGKTKLLNSSK-------------------YPKCLALVQ--GKVYCG-CQDGAIQEID 961 (1094)
Q Consensus 905 ~~~~~~~~fspdg~~l~~~~-~~g~i~l~~~~~-------------------~v~~l~~s~--~~l~sg-s~Dg~I~iwD 961 (1094)
+ +++||+++++++ ..+.+.++|... .+..+..++ ..+++. -..+.|-+.|
T Consensus 84 ~-------~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd 156 (369)
T PF02239_consen 84 A-------VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVD 156 (369)
T ss_dssp E-------E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEE
T ss_pred E-------EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEE
Confidence 5 999999998776 458888888532 122333332 223333 3347777777
Q ss_pred CCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-----CCCCEEEEEEeCC--
Q 001349 962 LATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-----TLSEVRAMVVSSE-- 1034 (1094)
Q Consensus 962 l~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-----~~~~v~~l~~spd-- 1034 (1094)
......... +............|+|++.|+..+......|-++|..+++.+..+. |......+ .+|.
T Consensus 157 y~d~~~~~~-----~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g 230 (369)
T PF02239_consen 157 YSDPKNLKV-----TTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFG 230 (369)
T ss_dssp TTTSSCEEE-----EEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTE
T ss_pred eccccccce-----eeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcc
Confidence 766543321 1222335677889999998877665545599999999998877654 22233322 2222
Q ss_pred ----------EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEE----eCCCcEEEEeCC
Q 001349 1035 ----------LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIG----TSDGRIQAWGLS 1094 (1094)
Q Consensus 1035 ----------~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sg----s~DG~I~iWdls 1094 (1094)
..++.-..+.+.+||..+.+.+.++. ...+. .-+..+||++++.+. ...++|.++|..
T Consensus 231 ~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~-~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~ 302 (369)
T PF02239_consen 231 PVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIP-TQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKK 302 (369)
T ss_dssp EEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE--SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECC
T ss_pred eEEeeccccceecccccCCccccchhhcCeEEEEEE-CCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECc
Confidence 22233333456689999999999995 33444 778889999999988 445889999863
No 242
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.09 E-value=2.4e-08 Score=118.47 Aligned_cols=206 Identities=17% Similarity=0.106 Sum_probs=136.4
Q ss_pred CCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCC---CcEEEEECCCCceEEEEecccCccceeeeecC
Q 001349 832 DGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD---KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSN 908 (1094)
Q Consensus 832 Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~D---gtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~ 908 (1094)
...|.++|..+. ..+.+..+...+.+..|+|||++|+.++.+ ..|++||+.+++...+.. ....+....
T Consensus 169 ~~~l~~~d~~g~---~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~--~~~~~~~~~--- 240 (417)
T TIGR02800 169 RYELQVADYDGA---NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS--FPGMNGAPA--- 240 (417)
T ss_pred cceEEEEcCCCC---CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec--CCCCccceE---
Confidence 346888888655 234455677789999999999999887654 479999999885443332 223333333
Q ss_pred ceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEc--CCeEEEEECCCCceeEEeccceeecCCCCCeEE
Q 001349 909 SILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQ--DGAIQEIDLATGTFATIQTGHRKLLGKANPVHA 986 (1094)
Q Consensus 909 ~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~--Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~s 986 (1094)
|+|||+.++. +.+. +..|++||+.++... .+..+......
T Consensus 241 ----~spDg~~l~~---------------------------~~~~~~~~~i~~~d~~~~~~~-------~l~~~~~~~~~ 282 (417)
T TIGR02800 241 ----FSPDGSKLAV---------------------------SLSKDGNPDIYVMDLDGKQLT-------RLTNGPGIDTE 282 (417)
T ss_pred ----ECCCCCEEEE---------------------------EECCCCCccEEEEECCCCCEE-------ECCCCCCCCCC
Confidence 8999886533 2222 346888998877643 22233334456
Q ss_pred EEEeCCccEEEEEECCCC--EEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcCC---eEEEEECCCCcEEEEe
Q 001349 987 LQVHNGLVYTASTSLDGA--AVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGG---TVEIWDQKRQIRIETL 1059 (1094)
Q Consensus 987 l~fs~~~~~las~s~Dg~--~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg---~I~vwd~~t~~~~~~l 1059 (1094)
..|++++..++..+..++ .|.+||+.+++......+........|+|+ +++.++.++ .|.+||+.++... .+
T Consensus 283 ~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l 361 (417)
T TIGR02800 283 PSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VL 361 (417)
T ss_pred EEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-Ec
Confidence 789999988776654332 688888877765433335566778899988 666666654 7999999886543 33
Q ss_pred cccCCcceEEEEEcCCCCEEEEEeCCC
Q 001349 1060 QTGTSGKVQCMALDDNEEFLVIGTSDG 1086 (1094)
Q Consensus 1060 ~~~h~~~I~~l~~Spdg~~L~sgs~DG 1086 (1094)
. .. .......|+|||++|+.++.++
T Consensus 362 ~-~~-~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 362 T-DT-GLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred c-CC-CCCCCceECCCCCEEEEEEeCC
Confidence 2 11 2345568999999888777654
No 243
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.06 E-value=3.7e-07 Score=105.05 Aligned_cols=274 Identities=11% Similarity=0.184 Sum_probs=169.2
Q ss_pred EEEeeCC----CCeEEEeCC--c----ceeecccCCCcEEEEEEeCC--EEEEEEC----CCeEEEEecCC--CcceeEE
Q 001349 788 VLSNGHD----SSADFWNHR--E----LVHVDSSENGKVLSIACFRD--KIFSGHS----DGTIKVWTGRG--SILHLIQ 849 (1094)
Q Consensus 788 l~s~s~d----g~I~vWd~~--~----~~~~~~~h~~~V~~l~fspd--~LaSgs~----Dg~I~vWd~~t--~~~~~~~ 849 (1094)
++.|++. +.|.+|+++ . .... .........++++|+ +|++... +|.|..|++.. +.+..+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~-~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQT-VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEE-EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeee-ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 4455555 789998883 1 1111 123455677889886 7777766 57999998775 5555666
Q ss_pred EecccCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCC-CceEEEE-ecccC--ccc--eeeeecCceEEEeeCCCeEEE
Q 001349 850 QIREHTKAVTGLAILQSGEMLYSGSL-DKTARVWSIGN-EEIHCVQ-VHDIK--DQI--QNLAVSNSILCFIPQGAGIKV 922 (1094)
Q Consensus 850 ~l~~H~~~V~sv~fspdg~~LaSgs~-DgtI~vWdi~~-~~~~~~~-~~~~~--~~V--~~v~~~~~~~~fspdg~~l~~ 922 (1094)
...........++++|++++|+++.. +|+|.++++.. |.+.... ...+. .+. ......+..+.|+|+|+++.+
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 66544556678999999999999875 89999999987 4322221 11110 000 000111123347888876533
Q ss_pred EEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCc--eeEEeccceeecCCCCCeEEEEEeCCccEEEEEE
Q 001349 923 HLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGT--FATIQTGHRKLLGKANPVHALQVHNGLVYTASTS 1000 (1094)
Q Consensus 923 ~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~--~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s 1000 (1094)
.. -....|.+|++.... ... .. ............+.|+|++.++....
T Consensus 161 ~d---------------------------lG~D~v~~~~~~~~~~~l~~--~~-~~~~~~G~GPRh~~f~pdg~~~Yv~~ 210 (345)
T PF10282_consen 161 PD---------------------------LGADRVYVYDIDDDTGKLTP--VD-SIKVPPGSGPRHLAFSPDGKYAYVVN 210 (345)
T ss_dssp EE---------------------------TTTTEEEEEEE-TTS-TEEE--EE-EEECSTTSSEEEEEE-TTSSEEEEEE
T ss_pred Ee---------------------------cCCCEEEEEEEeCCCceEEE--ee-ccccccCCCCcEEEEcCCcCEEEEec
Confidence 22 234578888887655 221 10 11123345678899999998887777
Q ss_pred CCCCEEEEEECC--CCe--EEEEec-------CCCCEEEEEEeCC--EEEEEE-cCCeEEEEECC--CCc--EEEEeccc
Q 001349 1001 LDGAAVKMWSTS--NYN--MVGSLP-------TLSEVRAMVVSSE--LVYLGC-KGGTVEIWDQK--RQI--RIETLQTG 1062 (1094)
Q Consensus 1001 ~Dg~~I~iwd~~--~~~--~~~~~~-------~~~~v~~l~~spd--~l~sgs-~dg~I~vwd~~--t~~--~~~~l~~~ 1062 (1094)
...++|.+|++. ++. .+..+. .......+.++|| +++++. ..+.|.+|++. +++ .+..+..
T Consensus 211 e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~- 289 (345)
T PF10282_consen 211 ELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT- 289 (345)
T ss_dssp TTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE-
T ss_pred CCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC-
Confidence 666799999988 443 223332 1236889999998 666654 57899999983 333 3344432
Q ss_pred CCcceEEEEEcCCCCEEEEEe-CCCcEEEEeC
Q 001349 1063 TSGKVQCMALDDNEEFLVIGT-SDGRIQAWGL 1093 (1094)
Q Consensus 1063 h~~~I~~l~~Spdg~~L~sgs-~DG~I~iWdl 1093 (1094)
.......++++|+|++|++++ .++.|.+|++
T Consensus 290 ~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 290 GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred CCCCccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence 233589999999999999887 5678999875
No 244
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.04 E-value=1.8e-08 Score=105.61 Aligned_cols=108 Identities=18% Similarity=0.320 Sum_probs=86.1
Q ss_pred CCCeEEEEEeCCccEEEEEE--CCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEc---CCeEEEEECCCC
Q 001349 981 ANPVHALQVHNGLVYTASTS--LDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCK---GGTVEIWDQKRQ 1053 (1094)
Q Consensus 981 ~~~V~sl~fs~~~~~las~s--~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~---dg~I~vwd~~t~ 1053 (1094)
.++|.+++|+|++..++... .+ +.|.+||++ ++.+..+. ...+..+.|+|+ ++++|+. .|.|.+||..+.
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~-~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~ 135 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMP-AKVTLYDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK 135 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCC-cccEEEcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 45799999999988765442 34 489999996 66666665 456788999998 7777764 467999999999
Q ss_pred cEEEEecccCCcceEEEEEcCCCCEEEEEeC------CCcEEEEeCC
Q 001349 1054 IRIETLQTGTSGKVQCMALDDNEEFLVIGTS------DGRIQAWGLS 1094 (1094)
Q Consensus 1054 ~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~------DG~I~iWdls 1094 (1094)
+.+..+. |. .++.++|||||++|++++. |+.++||+++
T Consensus 136 ~~i~~~~--~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 136 KKISTFE--HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred EEeeccc--cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 9888873 44 4789999999999998875 7889999863
No 245
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=99.04 E-value=6.8e-11 Score=124.11 Aligned_cols=69 Identities=17% Similarity=0.341 Sum_probs=62.7
Q ss_pred CCCceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHHHHh
Q 001349 160 PPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQ 230 (1094)
Q Consensus 160 ~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~~~ 230 (1094)
+++-+.|-||.++|+-||+++||||||..||+.++.. +..||.|...++...+. .|+.|..+|+.+.-.
T Consensus 20 lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es~Lr-~n~il~Eiv~S~~~~ 88 (442)
T KOG0287|consen 20 LDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTESDLR-NNRILDEIVKSLNFA 88 (442)
T ss_pred hHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCceecccchhhhh-hhhHHHHHHHHHHHH
Confidence 4457899999999999999999999999999999987 66799999999999996 999999999998643
No 246
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=8.6e-08 Score=108.42 Aligned_cols=291 Identities=12% Similarity=0.106 Sum_probs=174.1
Q ss_pred ccccccCcEEEEeeCCCCeEEEeCCcceeecccCCCcEEEEEEeCC--EEEE-----EECC-----CeEEEEecCCCcce
Q 001349 779 SPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD--KIFS-----GHSD-----GTIKVWTGRGSILH 846 (1094)
Q Consensus 779 ~~~~~d~~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~fspd--~LaS-----gs~D-----g~I~vWd~~t~~~~ 846 (1094)
..++..|..+ ..+.+..++|++.......+......++++.|+|- +|.+ -..+ -.+.+|++.++ .
T Consensus 40 ~~~S~~G~lf-A~~~~~~v~i~~~~~~~~~lt~~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~--~ 116 (566)
T KOG2315|consen 40 FAYSNNGRLF-AYSDNQVVKVFEIATLKVVLCVELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETG--V 116 (566)
T ss_pred EEEcCCCcEE-EEEcCCeEEEEEccCCcEEEEeccceeeeeeecccccccccccccccccCCCCCCCceeeeeeccc--e
Confidence 3444445444 45667788888887543333333448899999983 4433 1223 34679999996 3
Q ss_pred eEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCC--eEEEEE
Q 001349 847 LIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGA--GIKVHL 924 (1094)
Q Consensus 847 ~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~--~l~~~~ 924 (1094)
....++.....-|+..|+.|..+.+--. .+.+.+|+...-+ .....-+...+..+. ++|.+. .+++..
T Consensus 117 ~~s~~q~k~Q~~W~~qfs~dEsl~arlv-~nev~f~~~~~f~--~~~~kl~~~~i~~f~-------lSpgp~~~~vAvyv 186 (566)
T KOG2315|consen 117 QRSQIQKKMQNGWVPQFSIDESLAARLV-SNEVQFYDLGSFK--TIQHKLSVSGITMLS-------LSPGPEPPFVAVYV 186 (566)
T ss_pred ehhheehhhhcCcccccccchhhhhhhh-cceEEEEecCCcc--ceeeeeeccceeeEE-------ecCCCCCceEEEEc
Confidence 4444433222227899998876443222 2569999988743 111111234455554 444422 333322
Q ss_pred e-----CCeEEEEcCC---------------CCceEEEEeC---CEEE--EEEcC---------CeEEEEECCCCceeEE
Q 001349 925 R-----NGKTKLLNSS---------------KYPKCLALVQ---GKVY--CGCQD---------GAIQEIDLATGTFATI 970 (1094)
Q Consensus 925 ~-----~g~i~l~~~~---------------~~v~~l~~s~---~~l~--sgs~D---------g~I~iwDl~~~~~~~~ 970 (1094)
- -+.+++|.-. ..-..+.|+. +.|+ +...| .+++++++......
T Consensus 187 Pe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~-- 264 (566)
T KOG2315|consen 187 PEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVS-- 264 (566)
T ss_pred cCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEE--
Confidence 1 1345666532 1112333442 2232 33333 35777777733332
Q ss_pred eccceeecCCCCCeEEEEEeCCccEEEE-EECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEc---CCe
Q 001349 971 QTGHRKLLGKANPVHALQVHNGLVYTAS-TSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCK---GGT 1044 (1094)
Q Consensus 971 ~~~~~~~~~h~~~V~sl~fs~~~~~las-~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~---dg~ 1044 (1094)
.-....++|+++.|++++.-++. .+.--..+.|||++ +.++..+. .++-+++-|+|. +++.++. .|.
T Consensus 265 -----V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~-egpRN~~~fnp~g~ii~lAGFGNL~G~ 337 (566)
T KOG2315|consen 265 -----VPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP-EGPRNTAFFNPHGNIILLAGFGNLPGD 337 (566)
T ss_pred -----EecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC-CCCccceEECCCCCEEEEeecCCCCCc
Confidence 22234689999999988854433 33333589999985 45555553 445567888887 5555554 389
Q ss_pred EEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeC------CCcEEEEeCC
Q 001349 1045 VEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTS------DGRIQAWGLS 1094 (1094)
Q Consensus 1045 I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~------DG~I~iWdls 1094 (1094)
+.|||+.+.+++..+.. ..-+-+.|+|||.+++|++. |+.++||+++
T Consensus 338 mEvwDv~n~K~i~~~~a---~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 338 MEVWDVPNRKLIAKFKA---ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred eEEEeccchhhcccccc---CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 99999999999888852 24577899999999999875 7889999874
No 247
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.02 E-value=1.4e-08 Score=122.04 Aligned_cols=222 Identities=14% Similarity=0.187 Sum_probs=155.9
Q ss_pred EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceee
Q 001349 825 KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNL 904 (1094)
Q Consensus 825 ~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v 904 (1094)
+++++..-+.+.+=+.... . +..-.+.|....+..+...++.++.+..+-+||...+.. ...........-.
T Consensus 63 ~~v~~~~~~~v~~~~~~~~---~---~~~~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~--~~~i~~~er~~l~ 134 (967)
T KOG0974|consen 63 KIVTCAKSDEVYVKEASNQ---I---IERFSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSV--LSKIQSDERCTLY 134 (967)
T ss_pred eEEEEEeecceeecchhhh---h---hhhccccccccchhhhcceEEEEEcCceEEEEecccCce--ehhcCCCceEEEE
Confidence 5556655444443332221 1 122334455556666778899999999999999987631 1111111111100
Q ss_pred eecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCe
Q 001349 905 AVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPV 984 (1094)
Q Consensus 905 ~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V 984 (1094)
. .-.+.+++ .+=++++|+.-+.|.+|+....... ..+.||.+.|
T Consensus 135 ~--~~~~g~s~----------------------------~~~~i~~gsv~~~iivW~~~~dn~p------~~l~GHeG~i 178 (967)
T KOG0974|consen 135 S--SLIIGDSA----------------------------EELYIASGSVFGEIIVWKPHEDNKP------IRLKGHEGSI 178 (967)
T ss_pred e--EEEEeccC----------------------------cEEEEEeccccccEEEEeccccCCc------ceecccCCce
Confidence 0 00000000 0114888999999999998832221 3578999999
Q ss_pred EEEEEeCCccEEEEEECCCCEEEEEECCCCeEEE--EecCCCCEEEEEEeCCEEEEEEcCCeEEEEECCCCcEEEEeccc
Q 001349 985 HALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVG--SLPTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTG 1062 (1094)
Q Consensus 985 ~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~--~~~~~~~v~~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~ 1062 (1094)
.++.++.++.++++.|.| +++++|++.+.+... -|.|...++.+.|.|+.+++++.|.+.++|+.. ++.+..+. +
T Consensus 179 F~i~~s~dg~~i~s~SdD-RsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n~i~t~gedctcrvW~~~-~~~l~~y~-~ 255 (967)
T KOG0974|consen 179 FSIVTSLDGRYIASVSDD-RSIRLWPIDSREVLGCTGFGHSARVWACCFLPNRIITVGEDCTCRVWGVN-GTQLEVYD-E 255 (967)
T ss_pred EEEEEccCCcEEEEEecC-cceeeeecccccccCcccccccceeEEEEeccceeEEeccceEEEEEecc-cceehhhh-h
Confidence 999999999999999987 699999999877654 456899999999999999999999999999654 44455674 5
Q ss_pred CC-cceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1063 TS-GKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1063 h~-~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
|. ..|+.++..++...++|++.||.+++||+
T Consensus 256 h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 256 HSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred hhhcceeEEEEcCCceEEEeeccCcchhhhhh
Confidence 54 47999999999999999999999999986
No 248
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.02 E-value=9.6e-08 Score=113.67 Aligned_cols=213 Identities=12% Similarity=0.040 Sum_probs=133.2
Q ss_pred eEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCC---CcEEEEECCCCceEEEEecccCccceeeeecCce
Q 001349 834 TIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD---KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSI 910 (1094)
Q Consensus 834 ~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~D---gtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~ 910 (1094)
.|.++|..++. .+.+..+...+....|+|||+.|+..+.+ ..|.+||+.+++...+... ...+...
T Consensus 180 ~l~~~d~~g~~---~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~--~g~~~~~------ 248 (430)
T PRK00178 180 TLQRSDYDGAR---AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF--EGLNGAP------ 248 (430)
T ss_pred EEEEECCCCCC---ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC--CCCcCCe------
Confidence 47788887662 34455677889999999999999877654 3689999998864433222 2222223
Q ss_pred EEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEe
Q 001349 911 LCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVH 990 (1094)
Q Consensus 911 ~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs 990 (1094)
.|+|||+.++..... ..+..|.+||+.++.... +..+........|+
T Consensus 249 -~~SpDG~~la~~~~~-------------------------~g~~~Iy~~d~~~~~~~~-------lt~~~~~~~~~~~s 295 (430)
T PRK00178 249 -AWSPDGSKLAFVLSK-------------------------DGNPEIYVMDLASRQLSR-------VTNHPAIDTEPFWG 295 (430)
T ss_pred -EECCCCCEEEEEEcc-------------------------CCCceEEEEECCCCCeEE-------cccCCCCcCCeEEC
Confidence 399999876432211 112368888998876532 22333445667899
Q ss_pred CCccEEEEEECCC--CEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEc-CC--eEEEEECCCCcEEEEecccC
Q 001349 991 NGLVYTASTSLDG--AAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCK-GG--TVEIWDQKRQIRIETLQTGT 1063 (1094)
Q Consensus 991 ~~~~~las~s~Dg--~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~-dg--~I~vwd~~t~~~~~~l~~~h 1063 (1094)
|++..++..+..+ ..|.+||+.+++...............|+|| .++..+. ++ .|.+||+.+++. ..+...
T Consensus 296 pDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~~- 373 (430)
T PRK00178 296 KDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILTDT- 373 (430)
T ss_pred CCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEccCC-
Confidence 9988776655432 2677888877764432222333445788988 5555443 33 588999988864 333222
Q ss_pred CcceEEEEEcCCCCEEEEEeCC-C--cEEEEeC
Q 001349 1064 SGKVQCMALDDNEEFLVIGTSD-G--RIQAWGL 1093 (1094)
Q Consensus 1064 ~~~I~~l~~Spdg~~L~sgs~D-G--~I~iWdl 1093 (1094)
.......|+|||++++..+.+ | .|.++++
T Consensus 374 -~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~ 405 (430)
T PRK00178 374 -SLDESPSVAPNGTMLIYATRQQGRGVLMLVSI 405 (430)
T ss_pred -CCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 222356899999998766643 3 3555543
No 249
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.98 E-value=1.9e-07 Score=111.12 Aligned_cols=211 Identities=14% Similarity=0.082 Sum_probs=130.1
Q ss_pred eEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCC-C--cEEEEECCCCceEEEEecccCccceeeeecCce
Q 001349 834 TIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD-K--TARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSI 910 (1094)
Q Consensus 834 ~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~D-g--tI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~ 910 (1094)
.|.++|..+.. .+.+..+...+.+..|+|||+.|+..+.+ + .|.+||+.+++...+... ......
T Consensus 199 ~l~i~d~dG~~---~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~--~g~~~~------- 266 (448)
T PRK04792 199 QLMIADYDGYN---EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF--PGINGA------- 266 (448)
T ss_pred EEEEEeCCCCC---ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC--CCCcCC-------
Confidence 67777877653 23445567788999999999998876543 2 588899988764433322 222222
Q ss_pred EEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCC--eEEEEECCCCceeEEeccceeecCCCCCeEEEE
Q 001349 911 LCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDG--AIQEIDLATGTFATIQTGHRKLLGKANPVHALQ 988 (1094)
Q Consensus 911 ~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg--~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~ 988 (1094)
..|+|||+.++. +.+.+| .|.+||+.+++.. .+..+........
T Consensus 267 ~~wSPDG~~La~---------------------------~~~~~g~~~Iy~~dl~tg~~~-------~lt~~~~~~~~p~ 312 (448)
T PRK04792 267 PRFSPDGKKLAL---------------------------VLSKDGQPEIYVVDIATKALT-------RITRHRAIDTEPS 312 (448)
T ss_pred eeECCCCCEEEE---------------------------EEeCCCCeEEEEEECCCCCeE-------ECccCCCCccceE
Confidence 349999997643 233344 4778888877653 2233344556788
Q ss_pred EeCCccEEEEEECCC--CEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEE-cCC--eEEEEECCCCcEEEEecc
Q 001349 989 VHNGLVYTASTSLDG--AAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGC-KGG--TVEIWDQKRQIRIETLQT 1061 (1094)
Q Consensus 989 fs~~~~~las~s~Dg--~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs-~dg--~I~vwd~~t~~~~~~l~~ 1061 (1094)
|+||+..++..+..+ ..|.++|+.+++..............+|+|| +++..+ .++ .|.++|+.+++.. .+..
T Consensus 313 wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~ 391 (448)
T PRK04792 313 WHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTS 391 (448)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccC
Confidence 999998877665432 2577778877765432223333345789998 454443 344 4666788887643 3322
Q ss_pred cCCcceEEEEEcCCCCEEEEEeC-CCc--EEEEeC
Q 001349 1062 GTSGKVQCMALDDNEEFLVIGTS-DGR--IQAWGL 1093 (1094)
Q Consensus 1062 ~h~~~I~~l~~Spdg~~L~sgs~-DG~--I~iWdl 1093 (1094)
.. ......|+|||+.|+..+. +|. +.+++.
T Consensus 392 ~~--~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~ 424 (448)
T PRK04792 392 TR--LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI 424 (448)
T ss_pred CC--CCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 21 2234579999998876554 343 555554
No 250
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.98 E-value=1.3e-07 Score=112.62 Aligned_cols=232 Identities=13% Similarity=0.048 Sum_probs=138.8
Q ss_pred CeEEEeCCc-ceeecccCCCcEEEEEEeCC--EEEEEE-CCC--eEEEEecCCCcceeEEEecccCCCeEEEEEecCCCE
Q 001349 796 SADFWNHRE-LVHVDSSENGKVLSIACFRD--KIFSGH-SDG--TIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEM 869 (1094)
Q Consensus 796 ~I~vWd~~~-~~~~~~~h~~~V~~l~fspd--~LaSgs-~Dg--~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~ 869 (1094)
.+.++|.+. ....+..+...+.+..|+|| .|+..+ .++ .|++||+.++....+..+. +......|+|||+.
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~---g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP---GINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC---CCcCCeeECCCCCE
Confidence 555667652 23455567788999999997 555443 333 5888999888443443333 33456899999997
Q ss_pred EEE-EeCCCc--EEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCC
Q 001349 870 LYS-GSLDKT--ARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQG 946 (1094)
Q Consensus 870 LaS-gs~Dgt--I~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~ 946 (1094)
|+. .+.+|. |.+||+.+++...+.. +....... .|+|||+.++.....+
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~~~lt~--~~~~~~~p-------~wSpDG~~I~f~s~~~------------------- 327 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKALTRITR--HRAIDTEP-------SWHPDGKSLIFTSERG------------------- 327 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCeEECcc--CCCCccce-------EECCCCCEEEEEECCC-------------------
Confidence 764 566665 7778888876433322 12222223 3899998764432110
Q ss_pred EEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCC--EEEEEECCCCeEEEEecCCC
Q 001349 947 KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGA--AVKMWSTSNYNMVGSLPTLS 1024 (1094)
Q Consensus 947 ~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~--~I~iwd~~~~~~~~~~~~~~ 1024 (1094)
....|.++|+.+++.... ++.++ ......|+|++.+++..+.+++ .|.++|+.++... .+....
T Consensus 328 ------g~~~Iy~~dl~~g~~~~L-----t~~g~--~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~ 393 (448)
T PRK04792 328 ------GKPQIYRVNLASGKVSRL-----TFEGE--QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTR 393 (448)
T ss_pred ------CCceEEEEECCCCCEEEE-----ecCCC--CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCCC
Confidence 123566778877765422 11122 2335689999988877665443 4556788777643 333222
Q ss_pred CEEEEEEeCC--EE-EEEEcCC--eEEEEECCCCcEEEEecccCCcceEEEEEcC
Q 001349 1025 EVRAMVVSSE--LV-YLGCKGG--TVEIWDQKRQIRIETLQTGTSGKVQCMALDD 1074 (1094)
Q Consensus 1025 ~v~~l~~spd--~l-~sgs~dg--~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Sp 1074 (1094)
......|+|| .+ ++...+| .+++++. +|.....+. .+.+.+...+|+|
T Consensus 394 ~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~-~~~g~~~~p~Wsp 446 (448)
T PRK04792 394 LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLP-AGQGEVKSPAWSP 446 (448)
T ss_pred CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECc-CCCCCcCCCccCC
Confidence 2234578988 44 4444444 4777787 455556663 4556778888887
No 251
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.98 E-value=2.7e-08 Score=105.75 Aligned_cols=279 Identities=14% Similarity=0.229 Sum_probs=175.6
Q ss_pred ccccccccccCcEEEEeeCCCCeEEEeCCc-------ceeecccCC------------CcEEEEEEeCC----EEEEEEC
Q 001349 775 LRKYSPLAFEMVKVLSNGHDSSADFWNHRE-------LVHVDSSEN------------GKVLSIACFRD----KIFSGHS 831 (1094)
Q Consensus 775 ~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~-------~~~~~~~h~------------~~V~~l~fspd----~LaSgs~ 831 (1094)
++...-+.-+|.+|+||..+|.|.++.-.. ....++.|. ..|..+.|.++ .+...+.
T Consensus 27 iis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstN 106 (433)
T KOG1354|consen 27 IISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTN 106 (433)
T ss_pred ceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecC
Confidence 344455666899999999999999997552 223444553 46888999874 7778889
Q ss_pred CCeEEEEecCCCccee---------------------------------EEEe-cccCCCeEEEEEecCCCEEEEEeCCC
Q 001349 832 DGTIKVWTGRGSILHL---------------------------------IQQI-REHTKAVTGLAILQSGEMLYSGSLDK 877 (1094)
Q Consensus 832 Dg~I~vWd~~t~~~~~---------------------------------~~~l-~~H~~~V~sv~fspdg~~LaSgs~Dg 877 (1094)
|.+|++|.+.....+. .+.+ .+|+--|+++.++.|+..++|+. |=
T Consensus 107 dktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD-dL 185 (433)
T KOG1354|consen 107 DKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD-DL 185 (433)
T ss_pred CcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-ce
Confidence 9999999876432111 1111 35777899999999988888764 56
Q ss_pred cEEEEECCCCc--eEEEEecccC-----ccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEE
Q 001349 878 TARVWSIGNEE--IHCVQVHDIK-----DQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYC 950 (1094)
Q Consensus 878 tI~vWdi~~~~--~~~~~~~~~~-----~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~s 950 (1094)
.|.+|++.--. ...+...++. .-|++.. |+|..- +.++-
T Consensus 186 RINLWnlei~d~sFnIVDIKP~nmEeLteVITsaE-------Fhp~~c---------------------------n~f~Y 231 (433)
T KOG1354|consen 186 RINLWNLEIIDQSFNIVDIKPANMEELTEVITSAE-------FHPHHC---------------------------NVFVY 231 (433)
T ss_pred eeeeccccccCCceeEEEccccCHHHHHHHHhhhc-------cCHhHc---------------------------cEEEE
Confidence 78999876421 2222222111 1122222 333222 34666
Q ss_pred EEcCCeEEEEECCCCceeE----Eec-----cc-eeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECC-CCeEEEE
Q 001349 951 GCQDGAIQEIDLATGTFAT----IQT-----GH-RKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTS-NYNMVGS 1019 (1094)
Q Consensus 951 gs~Dg~I~iwDl~~~~~~~----~~~-----~~-~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~-~~~~~~~ 1019 (1094)
.+..|+|++-|++....-. .+. .. .-+.+-...|..+.|+++|.|+.+-.. -+|++||+. ..+++.+
T Consensus 232 SSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy--ltvk~wD~nme~~pv~t 309 (433)
T KOG1354|consen 232 SSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY--LTVKLWDLNMEAKPVET 309 (433)
T ss_pred ecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc--ceeEEEeccccCCcceE
Confidence 7788999999998533210 000 00 112223357899999999999998743 489999994 4566666
Q ss_pred ec-C------------CCC---EEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEE-E-------------------ecc
Q 001349 1020 LP-T------------LSE---VRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIE-T-------------------LQT 1061 (1094)
Q Consensus 1020 ~~-~------------~~~---v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~-~-------------------l~~ 1061 (1094)
++ | ... -..++|+++ ++++|+..+.+++|+...|.... + ...
T Consensus 310 ~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~ 389 (433)
T KOG1354|consen 310 YPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSS 389 (433)
T ss_pred EeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecC
Confidence 65 2 111 245788888 99999999999999965442110 0 000
Q ss_pred cC-------------CcceEEEEEcCCCCEEEEEeCCCcEEEE
Q 001349 1062 GT-------------SGKVQCMALDDNEEFLVIGTSDGRIQAW 1091 (1094)
Q Consensus 1062 ~h-------------~~~I~~l~~Spdg~~L~sgs~DG~I~iW 1091 (1094)
|. ...|...+|+|..+.++.+..+ .++||
T Consensus 390 g~r~~~~~~vd~ldf~kkilh~aWhp~en~ia~aatn-nlyif 431 (433)
T KOG1354|consen 390 GKRKRDEISVDALDFRKKILHTAWHPKENSIAVAATN-NLYIF 431 (433)
T ss_pred CCccccccccchhhhhhHHHhhccCCccceeeeeecC-ceEEe
Confidence 11 1135567899988888877655 46665
No 252
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.97 E-value=3.3e-10 Score=84.97 Aligned_cols=38 Identities=32% Similarity=0.835 Sum_probs=33.5
Q ss_pred ccCccccccCc-EEcCCcccccHHhHHHHHHhCCCCCCCC
Q 001349 166 CPITTHIFDDP-VTLETGQTYERRAIQEWIERGNSSCPIT 204 (1094)
Q Consensus 166 CpIc~~~~~dP-v~~~cGhtfc~~ci~~~~~~~~~~CP~c 204 (1094)
||||.+.+.+| ++++|||+||+.||.+|++. +..||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 57899999999999999998 6789987
No 253
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.96 E-value=3.2e-07 Score=108.82 Aligned_cols=231 Identities=13% Similarity=0.022 Sum_probs=140.6
Q ss_pred CCeEEEeCC-cceeecccCCCcEEEEEEeCC--EEEEEECC---CeEEEEecCCCcceeEEEecccCCCeEEEEEecCCC
Q 001349 795 SSADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSD---GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGE 868 (1094)
Q Consensus 795 g~I~vWd~~-~~~~~~~~h~~~V~~l~fspd--~LaSgs~D---g~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~ 868 (1094)
..|.++|.. .....+..+...+....|+|| +|+.++.+ ..|++||+.++... .+..+.+.+.++.|+|||+
T Consensus 170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~---~~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE---KVASFPGMNGAPAFSPDGS 246 (417)
T ss_pred ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE---EeecCCCCccceEECCCCC
Confidence 357777775 334555667778999999997 66665543 48999999988332 2334556677899999998
Q ss_pred EEE-EEeCCC--cEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC
Q 001349 869 MLY-SGSLDK--TARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ 945 (1094)
Q Consensus 869 ~La-Sgs~Dg--tI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~ 945 (1094)
.|+ +.+.++ .|++||+.++....+.. +....... .|+|||+.++.....+
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~~~l~~--~~~~~~~~-------~~s~dg~~l~~~s~~~------------------ 299 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQLTRLTN--GPGIDTEP-------SWSPDGKSIAFTSDRG------------------ 299 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCEEECCC--CCCCCCCE-------EECCCCCEEEEEECCC------------------
Confidence 776 444444 58889998875433322 12222222 3888888654332111
Q ss_pred CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCC--CEEEEEECCCCeEEEEecCC
Q 001349 946 GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG--AAVKMWSTSNYNMVGSLPTL 1023 (1094)
Q Consensus 946 ~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg--~~I~iwd~~~~~~~~~~~~~ 1023 (1094)
....|.+||+.++.... +..+...+....|+|++.+++.++.++ ..|.+||+.++.. ..+...
T Consensus 300 -------g~~~iy~~d~~~~~~~~-------l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~ 364 (417)
T TIGR02800 300 -------GSPQIYMMDADGGEVRR-------LTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDT 364 (417)
T ss_pred -------CCceEEEEECCCCCEEE-------eecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCC
Confidence 11257778887766432 222334567788999998888877653 2688899887544 333323
Q ss_pred CCEEEEEEeCC--EEEEEEcCC---eEEEEECCCCcEEEEecccCCcceEEEEE
Q 001349 1024 SEVRAMVVSSE--LVYLGCKGG---TVEIWDQKRQIRIETLQTGTSGKVQCMAL 1072 (1094)
Q Consensus 1024 ~~v~~l~~spd--~l~sgs~dg---~I~vwd~~t~~~~~~l~~~h~~~I~~l~~ 1072 (1094)
.......|+|| .++.++.++ .+++.+.. +.....+. .+.+.+...+|
T Consensus 365 ~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~-~~~g~~~~~~w 416 (417)
T TIGR02800 365 GLDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLP-LGNGDVREPAW 416 (417)
T ss_pred CCCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECC-CCCCCcCCCCC
Confidence 33455678888 555555443 45555543 44445553 23445555555
No 254
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.96 E-value=3.8e-09 Score=131.66 Aligned_cols=245 Identities=11% Similarity=0.111 Sum_probs=165.2
Q ss_pred EEEeeCCCCeEEEeCCcceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEec-ccCCCeEEEEEe
Q 001349 788 VLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIR-EHTKAVTGLAIL 864 (1094)
Q Consensus 788 l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~-~H~~~V~sv~fs 864 (1094)
+.....++...-|..+........|-..|.++.-+|. +.+||+.||.|++|....+ ..+..+. .....|+.+.|+
T Consensus 2183 ~~~~n~~~~~~tq~~~~~~~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~--~~v~~~rt~g~s~vtr~~f~ 2260 (2439)
T KOG1064|consen 2183 FTPSNLPWLGSTQTSRGASVMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHG--QQVVCFRTAGNSRVTRSRFN 2260 (2439)
T ss_pred CCcccCCccccceecccceeEeecccCceeeecCCCCCceEEecCCCceEEEEeccCC--CeEEEeeccCcchhhhhhhc
Confidence 3333344444455554333444555677888888884 9999999999999998877 3333332 223889999999
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEe
Q 001349 865 QSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALV 944 (1094)
Q Consensus 865 pdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s 944 (1094)
.+|+.+..+..||.+.+|.+... ..+....|......+. |..
T Consensus 2261 ~qGnk~~i~d~dg~l~l~q~~pk--~~~s~qchnk~~~Df~-------Fi~----------------------------- 2302 (2439)
T KOG1064|consen 2261 HQGNKFGIVDGDGDLSLWQASPK--PYTSWQCHNKALSDFR-------FIG----------------------------- 2302 (2439)
T ss_pred ccCCceeeeccCCceeecccCCc--ceeccccCCcccccee-------eee-----------------------------
Confidence 99999999999999999998842 1122222222222222 221
Q ss_pred CCEEEE---EEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec
Q 001349 945 QGKVYC---GCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP 1021 (1094)
Q Consensus 945 ~~~l~s---gs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~ 1021 (1094)
..+++ .+.++.+.+||.--..... ..-..|...++++++-|....+++|+.+| .|++||++..+.++++.
T Consensus 2303 -s~~~tag~s~d~~n~~lwDtl~~~~~s-----~v~~~H~~gaT~l~~~P~~qllisggr~G-~v~l~D~rqrql~h~~~ 2375 (2439)
T KOG1064|consen 2303 -SLLATAGRSSDNRNVCLWDTLLPPMNS-----LVHTCHDGGATVLAYAPKHQLLISGGRKG-EVCLFDIRQRQLRHTFQ 2375 (2439)
T ss_pred -hhhhccccCCCCCcccchhcccCcccc-----eeeeecCCCceEEEEcCcceEEEecCCcC-cEEEeehHHHHHHHHhh
Confidence 11222 2457889999965332221 11267899999999999999999999997 99999999877766665
Q ss_pred CCCCEEEEEEeCCEEEEEEcCCeEEEEECCCCcEEEEecccCCc----ce--EEEEEcCCCCEEEEEeCCCc
Q 001349 1022 TLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSG----KV--QCMALDDNEEFLVIGTSDGR 1087 (1094)
Q Consensus 1022 ~~~~v~~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~----~I--~~l~~Spdg~~L~sgs~DG~ 1087 (1094)
. +. ..+++++|+..|.|+||++.....++++...|.. .. ..+-.. .++.|.+++.||+
T Consensus 2376 ~------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~-~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2376 A------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINVG-QCNRIFSCGADGT 2439 (2439)
T ss_pred h------hh-hhheeeccCcccceEEEEccccchhhcCchhhcccchhhhcCceeeec-cCceEEEecCCCC
Confidence 3 22 3448999999999999999998888887654421 11 112122 2356777777774
No 255
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.96 E-value=3.9e-07 Score=108.48 Aligned_cols=233 Identities=12% Similarity=0.007 Sum_probs=140.8
Q ss_pred CeEEEeCC-cceeecccCCCcEEEEEEeCC--EEEEEECC---CeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCE
Q 001349 796 SADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSD---GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEM 869 (1094)
Q Consensus 796 ~I~vWd~~-~~~~~~~~h~~~V~~l~fspd--~LaSgs~D---g~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~ 869 (1094)
.|.++|.+ .....+..+...+....|+|| .|+..+.+ ..|.+||+.++..+.+. ...+.+....|+|||+.
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~---~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT---NFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc---CCCCCcCCeEECCCCCE
Confidence 36667776 233455567788999999997 66555433 46999999988433333 33344557899999998
Q ss_pred EE-EEeCCC--cEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCC
Q 001349 870 LY-SGSLDK--TARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQG 946 (1094)
Q Consensus 870 La-Sgs~Dg--tI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~ 946 (1094)
|+ +.+.+| .|.+||+.++....+.. ....... ..|+|||+.++.....+
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~~~lt~--~~~~~~~-------~~~spDg~~i~f~s~~~------------------- 308 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQLSRVTN--HPAIDTE-------PFWGKDGRTLYFTSDRG------------------- 308 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCeEEccc--CCCCcCC-------eEECCCCCEEEEEECCC-------------------
Confidence 87 455555 58888999876443322 1222222 23899998754332110
Q ss_pred EEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCC--EEEEEECCCCeEEEEecCCC
Q 001349 947 KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGA--AVKMWSTSNYNMVGSLPTLS 1024 (1094)
Q Consensus 947 ~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~--~I~iwd~~~~~~~~~~~~~~ 1024 (1094)
.+..|.++|+.+++..... ..+ .......|+|++.+++..+.+++ .|.+||+.++.. ..+....
T Consensus 309 ------g~~~iy~~d~~~g~~~~lt-----~~~--~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~~~ 374 (430)
T PRK00178 309 ------GKPQIYKVNVNGGRAERVT-----FVG--NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILTDTS 374 (430)
T ss_pred ------CCceEEEEECCCCCEEEee-----cCC--CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEccCCC
Confidence 1235777788777653221 111 22335678999988887765432 588899988764 3333322
Q ss_pred CEEEEEEeCC--EEEEEE-cC--CeEEEEECCCCcEEEEecccCCcceEEEEEcCC
Q 001349 1025 EVRAMVVSSE--LVYLGC-KG--GTVEIWDQKRQIRIETLQTGTSGKVQCMALDDN 1075 (1094)
Q Consensus 1025 ~v~~l~~spd--~l~sgs-~d--g~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spd 1075 (1094)
......|+|| .++..+ .+ ..|++++... .....+. .+.+.+...+|+|-
T Consensus 375 ~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~-~~~g~~~~p~ws~~ 428 (430)
T PRK00178 375 LDESPSVAPNGTMLIYATRQQGRGVLMLVSING-RVRLPLP-TAQGEVREPSWSPY 428 (430)
T ss_pred CCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEECc-CCCCCcCCCccCCC
Confidence 3335689998 444433 33 3577777754 3344453 34556778888863
No 256
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.96 E-value=2.2e-08 Score=112.09 Aligned_cols=183 Identities=16% Similarity=0.192 Sum_probs=122.9
Q ss_pred cCcEEEEeeCCCCeEEEeCCc--cee----ecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcceeEEEeccc
Q 001349 784 EMVKVLSNGHDSSADFWNHRE--LVH----VDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREH 854 (1094)
Q Consensus 784 d~~~l~s~s~dg~I~vWd~~~--~~~----~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H 854 (1094)
.+--++.|-..|.|.+.|... ... ...-....|+|+.|-|. .++.+..+|.++++|..-.
T Consensus 184 ~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~----------- 252 (636)
T KOG2394|consen 184 KGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV----------- 252 (636)
T ss_pred CCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccc-----------
Confidence 345566777778887776542 111 01112478999999873 8888889999999987321
Q ss_pred CCCeEEEEE--ecCCCEEEEEeC-----CCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCC
Q 001349 855 TKAVTGLAI--LQSGEMLYSGSL-----DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNG 927 (1094)
Q Consensus 855 ~~~V~sv~f--spdg~~LaSgs~-----DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g 927 (1094)
...+.-.| .+++..+..... +.-+.-|.+-. ..|...+ |+|||++
T Consensus 253 -~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~------------g~in~f~-------FS~DG~~-------- 304 (636)
T KOG2394|consen 253 -CGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGE------------GSINEFA-------FSPDGKY-------- 304 (636)
T ss_pred -ccCCCCcccccCCCCeeEEeeeeccccCCccceeEecc------------cccccee-------EcCCCce--------
Confidence 11111111 234444433211 11222232222 2344443 8888885
Q ss_pred eEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEE
Q 001349 928 KTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVK 1007 (1094)
Q Consensus 928 ~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~ 1007 (1094)
+++.+.||.++|||..+.+.+. .+...-+...|++|+||+.|+++|+.|+ .|.
T Consensus 305 --------------------LA~VSqDGfLRvF~fdt~eLlg------~mkSYFGGLLCvcWSPDGKyIvtGGEDD-LVt 357 (636)
T KOG2394|consen 305 --------------------LATVSQDGFLRIFDFDTQELLG------VMKSYFGGLLCVCWSPDGKYIVTGGEDD-LVT 357 (636)
T ss_pred --------------------EEEEecCceEEEeeccHHHHHH------HHHhhccceEEEEEcCCccEEEecCCcc-eEE
Confidence 7888999999999998877652 3333446789999999999999999998 999
Q ss_pred EEECCCCeEEEEec-CCCCEEEEEEe
Q 001349 1008 MWSTSNYNMVGSLP-TLSEVRAMVVS 1032 (1094)
Q Consensus 1008 iwd~~~~~~~~~~~-~~~~v~~l~~s 1032 (1094)
||.+...+.+..-. |.++|..++|+
T Consensus 358 VwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 358 VWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred EEEeccceEEEeccccccceeeEeec
Confidence 99999998887766 78999999998
No 257
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.94 E-value=1.5e-08 Score=121.81 Aligned_cols=199 Identities=17% Similarity=0.206 Sum_probs=145.5
Q ss_pred HHHHhhhccccccccccCcEEEEeeCCCCeEEEeCCcce-eecccCCCcE--EE---EEEeCC--EEEEEECCCeEEEEe
Q 001349 768 IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRELV-HVDSSENGKV--LS---IACFRD--KIFSGHSDGTIKVWT 839 (1094)
Q Consensus 768 ~~~~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~~~-~~~~~h~~~V--~~---l~fspd--~LaSgs~Dg~I~vWd 839 (1094)
.+..+...+.-..+..+..+++.+..++.+-+||..... .....+.... .+ +-++++ ++++|+.-|.|.+|+
T Consensus 82 ~~~~~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~ 161 (967)
T KOG0974|consen 82 IIERFSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWK 161 (967)
T ss_pred hhhhccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEe
Confidence 334444444446677788899999999999999988322 2222233222 11 223444 999999999999999
Q ss_pred cCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCe
Q 001349 840 GRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAG 919 (1094)
Q Consensus 840 ~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~ 919 (1094)
..... ... .+.+|.+.|.++.|+.||.+++|.|+|.++|+|++++++....
T Consensus 162 ~~~dn-~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~--------------------------- 212 (967)
T KOG0974|consen 162 PHEDN-KPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGC--------------------------- 212 (967)
T ss_pred ccccC-Ccc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCc---------------------------
Confidence 87432 233 6789999999999999999999999999999999999642111
Q ss_pred EEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCC-CCeEEEEEeCCccEEEE
Q 001349 920 IKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKA-NPVHALQVHNGLVYTAS 998 (1094)
Q Consensus 920 l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~-~~V~sl~fs~~~~~las 998 (1094)
..|.|+..+..+.+.++.+++++.|-+.++|+.. +.... .+.+|. ..|..++.+++....++
T Consensus 213 ----------~~fgHsaRvw~~~~~~n~i~t~gedctcrvW~~~-~~~l~------~y~~h~g~~iw~~~~~~~~~~~vT 275 (967)
T KOG0974|consen 213 ----------TGFGHSARVWACCFLPNRIITVGEDCTCRVWGVN-GTQLE------VYDEHSGKGIWKIAVPIGVIIKVT 275 (967)
T ss_pred ----------ccccccceeEEEEeccceeEEeccceEEEEEecc-cceeh------hhhhhhhcceeEEEEcCCceEEEe
Confidence 1244555666677777789999999999999654 44332 344443 56899999999999999
Q ss_pred EECCCCEEEEEECCC
Q 001349 999 TSLDGAAVKMWSTSN 1013 (1094)
Q Consensus 999 ~s~Dg~~I~iwd~~~ 1013 (1094)
++.|+ .+++||+..
T Consensus 276 ~g~Ds-~lk~~~l~~ 289 (967)
T KOG0974|consen 276 GGNDS-TLKLWDLNG 289 (967)
T ss_pred eccCc-chhhhhhhc
Confidence 99987 999999753
No 258
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.93 E-value=5.3e-08 Score=111.60 Aligned_cols=239 Identities=13% Similarity=0.109 Sum_probs=165.6
Q ss_pred cccccccCcEEEEeeCCCCeEEEeCC-----------------cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEE
Q 001349 778 YSPLAFEMVKVLSNGHDSSADFWNHR-----------------ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVW 838 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg~I~vWd~~-----------------~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vW 838 (1094)
+..+.....++++||.||.++|-.+. ...+++.||++.|.-+.|+.+ .|-|+..+|.|.||
T Consensus 19 c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVW 98 (1189)
T KOG2041|consen 19 CAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVW 98 (1189)
T ss_pred EEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEE
Confidence 45566678899999999999998654 123668899999999999985 89999999999999
Q ss_pred ecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCcc-ceeeeecCceEEEeeCC
Q 001349 839 TGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQ-IQNLAVSNSILCFIPQG 917 (1094)
Q Consensus 839 d~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~-V~~v~~~~~~~~fspdg 917 (1094)
-+-.+.|-.-..-....+.|.+++|+.||..+...-.||.|.|=.++.+. +...+.++. ... +.|++|.
T Consensus 99 mlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR---IwgKeLkg~~l~h-------v~ws~D~ 168 (1189)
T KOG2041|consen 99 MLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR---IWGKELKGQLLAH-------VLWSEDL 168 (1189)
T ss_pred eeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce---ecchhcchheccc-------eeecccH
Confidence 98877543333334456779999999999999999999999887777642 222221111 122 2388888
Q ss_pred CeEEEEEeCCeEEEEcCCC-----------------------CceEEEEeC----------CEEEEEEcCCeEEEEECCC
Q 001349 918 AGIKVHLRNGKTKLLNSSK-----------------------YPKCLALVQ----------GKVYCGCQDGAIQEIDLAT 964 (1094)
Q Consensus 918 ~~l~~~~~~g~i~l~~~~~-----------------------~v~~l~~s~----------~~l~sgs~Dg~I~iwDl~~ 964 (1094)
+.+.....+|...+++..+ .+..+.+.. ..++++..+|.+++..-.+
T Consensus 169 ~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eN 248 (1189)
T KOG2041|consen 169 EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEN 248 (1189)
T ss_pred HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcC
Confidence 8777777778887777422 133344431 2488888888888875444
Q ss_pred CceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCC--------CEEEEEECCCCeEEEEec-CCCCEEEEEEeCC
Q 001349 965 GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG--------AAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE 1034 (1094)
Q Consensus 965 ~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg--------~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd 1034 (1094)
......+ ...-.+....|+++|.+++.++.+. +.|.+|.. -|..+.+++ .+..|++++|-+.
T Consensus 249 D~~Pvv~-------dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~ 319 (1189)
T KOG2041|consen 249 DPEPVVV-------DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEGT 319 (1189)
T ss_pred CCCCeEE-------ecccEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCceeeeeEEcCC
Confidence 3322211 1224677889999999998887542 24555543 466667776 4667888887654
No 259
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.93 E-value=4.1e-09 Score=131.32 Aligned_cols=208 Identities=21% Similarity=0.259 Sum_probs=153.0
Q ss_pred EECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecC
Q 001349 829 GHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSN 908 (1094)
Q Consensus 829 gs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~ 908 (1094)
...+++..-|..+.+. ..++.|-..|.++.-+|...+-+||+.||.|++|....++..+.........|..+.
T Consensus 2186 ~n~~~~~~tq~~~~~~----~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~--- 2258 (2439)
T KOG1064|consen 2186 SNLPWLGSTQTSRGAS----VMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSR--- 2258 (2439)
T ss_pred ccCCccccceecccce----eEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhh---
Confidence 3345555556655441 123345567888888998889999999999999999887633332222235555554
Q ss_pred ceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEE
Q 001349 909 SILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQ 988 (1094)
Q Consensus 909 ~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~ 988 (1094)
|+.+|+ ++..+..||.+.+|.+. .+.. .....|....+.+.
T Consensus 2259 ----f~~qGn----------------------------k~~i~d~dg~l~l~q~~-pk~~------~s~qchnk~~~Df~ 2299 (2439)
T KOG1064|consen 2259 ----FNHQGN----------------------------KFGIVDGDGDLSLWQAS-PKPY------TSWQCHNKALSDFR 2299 (2439)
T ss_pred ----hcccCC----------------------------ceeeeccCCceeecccC-Ccce------eccccCCcccccee
Confidence 655555 46667788889999876 2222 34567888889999
Q ss_pred EeCCccEEEEEECCCCEEEEEECCCC---eEEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccC
Q 001349 989 VHNGLVYTASTSLDGAAVKMWSTSNY---NMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGT 1063 (1094)
Q Consensus 989 fs~~~~~las~s~Dg~~I~iwd~~~~---~~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h 1063 (1094)
|-......+.-+.|++.+.+||.--. .++. ..|.+.++++++-|. .+++|+.+|.|++||++..+..++++.
T Consensus 2300 Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-- 2376 (2439)
T KOG1064|consen 2300 FIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-- 2376 (2439)
T ss_pred eeehhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh--
Confidence 97766666667788899999997532 2333 348899999999998 899999999999999998888877752
Q ss_pred CcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1064 SGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1064 ~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
+. ...++++|+..|.|+||+++
T Consensus 2377 --------~~-~~~~f~~~ss~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2377 --------LD-TREYFVTGSSEGNIKIWRLS 2398 (2439)
T ss_pred --------hh-hhheeeccCcccceEEEEcc
Confidence 44 56799999999999999974
No 260
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.92 E-value=9.5e-08 Score=100.10 Aligned_cols=156 Identities=12% Similarity=0.232 Sum_probs=103.4
Q ss_pred EEEEEecCCCEEEEEeC---C-------CcEEEEECCC--CceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeC
Q 001349 859 TGLAILQSGEMLYSGSL---D-------KTARVWSIGN--EEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRN 926 (1094)
Q Consensus 859 ~sv~fspdg~~LaSgs~---D-------gtI~vWdi~~--~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~ 926 (1094)
..+.|+|+|++|+.-.. | |...+|.++. .....+.. ...++|.+++ |+|+|+.++
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l-~~~~~I~~~~-------WsP~g~~fa----- 75 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIEL-KKEGPIHDVA-------WSPNGNEFA----- 75 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeec-cCCCceEEEE-------ECcCCCEEE-----
Confidence 35778888887664433 1 2234444422 21112211 2233566666 777777543
Q ss_pred CeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCC--C
Q 001349 927 GKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG--A 1004 (1094)
Q Consensus 927 g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg--~ 1004 (1094)
++.|..++.|.+||++ ++.+. .+ +...++.+.|+|+|.+++.++.++ +
T Consensus 76 ---------------------vi~g~~~~~v~lyd~~-~~~i~------~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G 125 (194)
T PF08662_consen 76 ---------------------VIYGSMPAKVTLYDVK-GKKIF------SF--GTQPRNTISWSPDGRFLVLAGFGNLNG 125 (194)
T ss_pred ---------------------EEEccCCcccEEEcCc-ccEeE------ee--cCCCceEEEECCCCCEEEEEEccCCCc
Confidence 3445567899999996 44432 22 235778999999999999987542 3
Q ss_pred EEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEc------CCeEEEEECCCCcEEEEe
Q 001349 1005 AVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCK------GGTVEIWDQKRQIRIETL 1059 (1094)
Q Consensus 1005 ~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~------dg~I~vwd~~t~~~~~~l 1059 (1094)
.|.+||+++.+.+.+..+.. ++.++|+|| ++++++. |+.++||+.. |+.+...
T Consensus 126 ~l~~wd~~~~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 126 DLEFWDVRKKKKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred EEEEEECCCCEEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 79999999999988877654 789999999 6666653 7889999985 6665554
No 261
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.90 E-value=3e-06 Score=95.71 Aligned_cols=251 Identities=9% Similarity=0.087 Sum_probs=150.1
Q ss_pred CeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeC----------CCcEEEEECCCCceEEEEecccCccce
Q 001349 833 GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSL----------DKTARVWSIGNEEIHCVQVHDIKDQIQ 902 (1094)
Q Consensus 833 g~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~----------DgtI~vWdi~~~~~~~~~~~~~~~~V~ 902 (1094)
|+|.|.|..++ +.+.++..-..+- .+ +||||+.++++.. +..|.+||..+.+.......+ ..+-.
T Consensus 27 ~~v~ViD~~~~--~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p-~~p~~ 101 (352)
T TIGR02658 27 TQVYTIDGEAG--RVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELP-EGPRF 101 (352)
T ss_pred ceEEEEECCCC--EEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccC-CCchh
Confidence 89999999998 6777776433332 34 9999998887765 789999999998632212111 11111
Q ss_pred eeeecCceEEEeeCCCeEEEEEeC--CeEEEEcCCCC--ceEEEEeC---------CEEEEEEcCCeEEEEECCCCceeE
Q 001349 903 NLAVSNSILCFIPQGAGIKVHLRN--GKTKLLNSSKY--PKCLALVQ---------GKVYCGCQDGAIQEIDLATGTFAT 969 (1094)
Q Consensus 903 ~v~~~~~~~~fspdg~~l~~~~~~--g~i~l~~~~~~--v~~l~~s~---------~~l~sgs~Dg~I~iwDl~~~~~~~ 969 (1094)
.+...+....++|||+++.+...+ ..+.++|.... +..+...+ ....+-|.||......+.+.....
T Consensus 102 ~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~ 181 (352)
T TIGR02658 102 LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPK 181 (352)
T ss_pred hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceE
Confidence 112223355699999999987754 67778876432 22233322 223334566665554443322111
Q ss_pred EeccceeecCCCCCeEEE-EEeC-CccEEEEEECCCCEEEEEECCC-----CeEEEEec--------CCCCEEEEEEeCC
Q 001349 970 IQTGHRKLLGKANPVHAL-QVHN-GLVYTASTSLDGAAVKMWSTSN-----YNMVGSLP--------TLSEVRAMVVSSE 1034 (1094)
Q Consensus 970 ~~~~~~~~~~h~~~V~sl-~fs~-~~~~las~s~Dg~~I~iwd~~~-----~~~~~~~~--------~~~~v~~l~~spd 1034 (1094)
. .....+.+...++..= .|.+ ++.++..... | +|.+.|+.. ......+. ....+.-++++++
T Consensus 182 ~-~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G-~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~d 258 (352)
T TIGR02658 182 I-KPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-G-KIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRA 258 (352)
T ss_pred E-eeeeeecCCccccccCCceEcCCCcEEEEecC-C-eEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCC
Confidence 1 1001111100111000 2343 5555544433 5 999999643 22333222 1233445999987
Q ss_pred --EEEEEE----------cCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCC-EEEEEe-CCCcEEEEeC
Q 001349 1035 --LVYLGC----------KGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEE-FLVIGT-SDGRIQAWGL 1093 (1094)
Q Consensus 1035 --~l~sgs----------~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~-~L~sgs-~DG~I~iWdl 1093 (1094)
.+++.. ..+.|.++|..+++.+..+..++ .+..++++||++ +|++.+ .++.|.+.|.
T Consensus 259 g~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~--~~~~iavS~Dgkp~lyvtn~~s~~VsViD~ 329 (352)
T TIGR02658 259 RDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH--EIDSINVSQDAKPLLYALSTGDKTLYIFDA 329 (352)
T ss_pred CCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC--ceeeEEECCCCCeEEEEeCCCCCcEEEEEC
Confidence 555532 22589999999999999997554 799999999999 887666 5788999986
No 262
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.89 E-value=5.4e-08 Score=110.93 Aligned_cols=205 Identities=12% Similarity=0.138 Sum_probs=142.3
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCceEEEEecc--cCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEE
Q 001349 865 QSGEMLYSGSLDKTARVWSIGNEEIHCVQVHD--IKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLA 942 (1094)
Q Consensus 865 pdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~--~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~ 942 (1094)
|.+.++|..+.||.+|+||+..++++.-.... ..+...+.. |. +.. .+.. .-|.........+
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~-------w~-----L~~--~~s~-~k~~~~~~~~~~s 67 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTK-------WG-----LSA--DYSP-MKWLSLEKAKKAS 67 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEE-------EE-----EEe--ccch-HHHHhHHHHhhcc
Confidence 45679999999999999999998643322211 111111111 10 000 0000 0000000111111
Q ss_pred EeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-
Q 001349 943 LVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP- 1021 (1094)
Q Consensus 943 ~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~- 1021 (1094)
.....++-|...|.|.+|+...|+....+. -.+|.+.|+++.++.+-..+.+++.|. .+..|+......++.+.
T Consensus 68 ~~t~~lvlgt~~g~v~~ys~~~g~it~~~s----t~~h~~~v~~~~~~~~~~ciyS~~ad~-~v~~~~~~~~~~~~~~~~ 142 (541)
T KOG4547|consen 68 LDTSMLVLGTPQGSVLLYSVAGGEITAKLS----TDKHYGNVNEILDAQRLGCIYSVGADL-KVVYILEKEKVIIRIWKE 142 (541)
T ss_pred CCceEEEeecCCccEEEEEecCCeEEEEEe----cCCCCCcceeeecccccCceEecCCce-eEEEEecccceeeeeecc
Confidence 112358889999999999999998775432 246899999999998888888888886 99999999999998888
Q ss_pred CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCC-----CCEEEEE-eCCCcEEEEe
Q 001349 1022 TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDN-----EEFLVIG-TSDGRIQAWG 1092 (1094)
Q Consensus 1022 ~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spd-----g~~L~sg-s~DG~I~iWd 1092 (1094)
....+.+++++|| .+++| .+.|++||+++++.+.+| .||.++|+++.|-.+ |+++.++ ..+.-+.+|-
T Consensus 143 ~~~~~~sl~is~D~~~l~~a--s~~ik~~~~~~kevv~~f-tgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~ 218 (541)
T KOG4547|consen 143 QKPLVSSLCISPDGKILLTA--SRQIKVLDIETKEVVITF-TGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWV 218 (541)
T ss_pred CCCccceEEEcCCCCEEEec--cceEEEEEccCceEEEEe-cCCCcceEEEEEEEeccccccceeeeccccccceeEEE
Confidence 5677999999999 55555 478999999999999999 699999999999877 6666654 3444566774
No 263
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.88 E-value=4.6e-10 Score=90.13 Aligned_cols=58 Identities=21% Similarity=0.378 Sum_probs=34.1
Q ss_pred ceeccCccccccCcEE-cCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHH
Q 001349 163 DFVCPITTHIFDDPVT-LETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLI 224 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~-~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i 224 (1094)
-+.|++|.++|++||. ..|.|.||+.||...+.. .||+|+.+....++. -|+.|.++|
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~-~NrqLd~~i 65 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQ-INRQLDSMI 65 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS-----HHHHHHH
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHHH-hhhhhhccC
Confidence 5789999999999997 599999999999886643 499999999999996 899999886
No 264
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.86 E-value=8.7e-10 Score=113.48 Aligned_cols=69 Identities=16% Similarity=0.269 Sum_probs=61.4
Q ss_pred CCCceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHHHHh
Q 001349 160 PPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQ 230 (1094)
Q Consensus 160 ~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~~~ 230 (1094)
++.-+.|-||.+.|+-|+.++||||||..||.+|+.. +..||.|+.......+. .|..++.+++.+...
T Consensus 22 LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~esrlr-~~s~~~ei~es~~~~ 90 (391)
T COG5432 22 LDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCESRLR-GSSGSREINESHARN 90 (391)
T ss_pred chhHHHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCccccccHHhhhcc-cchhHHHHHHhhhhc
Confidence 3446899999999999999999999999999999987 66899999999888886 899999999988753
No 265
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.86 E-value=2.5e-07 Score=96.90 Aligned_cols=256 Identities=15% Similarity=0.179 Sum_probs=162.8
Q ss_pred CCCeEEEeCCc-----ceeecccCCCcEEEEEEeC-----C-EEEEEECCCeEEEEecCCCcceeEEEecccC---C---
Q 001349 794 DSSADFWNHRE-----LVHVDSSENGKVLSIACFR-----D-KIFSGHSDGTIKVWTGRGSILHLIQQIREHT---K--- 856 (1094)
Q Consensus 794 dg~I~vWd~~~-----~~~~~~~h~~~V~~l~fsp-----d-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~---~--- 856 (1094)
.|.+.+|++.. ........+..+..+.|.. + .++-+..+|.|.++..... .....+.+-. -
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~--~ss~~L~~ls~~ki~~~ 122 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDED--ESSVHLRGLSSKKISVV 122 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccc--eeeeeecccchhhhhhe
Confidence 35667777652 1122233456677777763 3 6777888899999976544 2222332211 1
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEe-cccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCC
Q 001349 857 AVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQV-HDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS 935 (1094)
Q Consensus 857 ~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~-~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~ 935 (1094)
...++.|++.|..++++-.+|.+.+-+.....++..+. ..|.-..+... |+..
T Consensus 123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~-------f~~~------------------- 176 (339)
T KOG0280|consen 123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAK-------FSDK------------------- 176 (339)
T ss_pred eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeee-------cccC-------------------
Confidence 24578899988889999888988855544432221111 11222222211 1111
Q ss_pred CCceEEEEeCCEEEEEEcCCeEEEEECCC-CceeEEeccceeecCCCCCeEEEEEe-CCccEEEEEECCCCEEEEEECC-
Q 001349 936 KYPKCLALVQGKVYCGCQDGAIQEIDLAT-GTFATIQTGHRKLLGKANPVHALQVH-NGLVYTASTSLDGAAVKMWSTS- 1012 (1094)
Q Consensus 936 ~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~-~~~~~~~~~~~~~~~h~~~V~sl~fs-~~~~~las~s~Dg~~I~iwd~~- 1012 (1094)
.|+.+++|+.|+.+..||++. ++.+. .....|...|.++.-+ |...++++|+.|+ .|++||++
T Consensus 177 --------~pnlvytGgDD~~l~~~D~R~p~~~i~-----~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe-~i~~~DtRn 242 (339)
T KOG0280|consen 177 --------EPNLVYTGGDDGSLSCWDIRIPKTFIW-----HNSKVHTSGVVSIYSSPPKPTYIATGSYDE-CIRVLDTRN 242 (339)
T ss_pred --------CCceEEecCCCceEEEEEecCCcceee-----ecceeeecceEEEecCCCCCceEEEecccc-ceeeeehhc
Confidence 245689999999999999993 33332 2234577889999887 5688999999997 99999999
Q ss_pred CCeEEEEecCCCCEEEEEEeCC---EEEEEEcCCeEEEEECCCCc----EEEEecccCCcceEEEEEcCCCCEEEEEe-C
Q 001349 1013 NYNMVGSLPTLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQI----RIETLQTGTSGKVQCMALDDNEEFLVIGT-S 1084 (1094)
Q Consensus 1013 ~~~~~~~~~~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~~----~~~~l~~~h~~~I~~l~~Spdg~~L~sgs-~ 1084 (1094)
.++++..-...+.|+.+..+|. .++.++.-+-.+|-+...+. ........|.+-+..-.|......|+|++ .
T Consensus 243 m~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFY 322 (339)
T KOG0280|consen 243 MGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFY 322 (339)
T ss_pred ccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeecc
Confidence 4777777777799999999997 23444444446677665432 12333356777777777855556788865 4
Q ss_pred CCcEE-EE
Q 001349 1085 DGRIQ-AW 1091 (1094)
Q Consensus 1085 DG~I~-iW 1091 (1094)
|+.++ +|
T Consensus 323 Dk~~~~~W 330 (339)
T KOG0280|consen 323 DKKIRQLW 330 (339)
T ss_pred ccceeeee
Confidence 77755 77
No 266
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.85 E-value=1.3e-05 Score=90.56 Aligned_cols=256 Identities=12% Similarity=0.085 Sum_probs=157.0
Q ss_pred CCeEEEeCCc--ceeecc-cCCCcEEEEEEeCC--EEE-EEE---------CCCeEEEEecCCCcceeEEEeccc-----
Q 001349 795 SSADFWNHRE--LVHVDS-SENGKVLSIACFRD--KIF-SGH---------SDGTIKVWTGRGSILHLIQQIREH----- 854 (1094)
Q Consensus 795 g~I~vWd~~~--~~~~~~-~h~~~V~~l~fspd--~La-Sgs---------~Dg~I~vWd~~t~~~~~~~~l~~H----- 854 (1094)
++|.+.|..+ .+.... +.... .+ ++|| .++ +.+ .+..|.+||..+. +.+..+.--
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~--~~~~~i~~p~~p~~ 101 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH--LPIADIELPEGPRF 101 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccC--cEEeEEccCCCchh
Confidence 8899999873 222222 22222 24 8887 444 444 5899999999999 677666531
Q ss_pred --CCCeEEEEEecCCCEEEEEe-C-CCcEEEEECCCCceEEEEecccCccceeeeec-CceEEEeeCCCeEEEEEeC-Ce
Q 001349 855 --TKAVTGLAILQSGEMLYSGS-L-DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVS-NSILCFIPQGAGIKVHLRN-GK 928 (1094)
Q Consensus 855 --~~~V~sv~fspdg~~LaSgs-~-DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~-~~~~~fspdg~~l~~~~~~-g~ 928 (1094)
...-..++++|||++++... . +..|-+.|+.+++.. ......+...-...+ ......+.||..+.+...+ |.
T Consensus 102 ~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv--~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~ 179 (352)
T TIGR02658 102 LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFV--RMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGN 179 (352)
T ss_pred hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEE--EEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCc
Confidence 22345789999999999776 3 689999999998632 222222211111111 1233456777766544332 32
Q ss_pred E-----EEEcC------CCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeE-----Eecccee-ecCCCCCeEEEEEeC
Q 001349 929 T-----KLLNS------SKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFAT-----IQTGHRK-LLGKANPVHALQVHN 991 (1094)
Q Consensus 929 i-----~l~~~------~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~-----~~~~~~~-~~~h~~~V~sl~fs~ 991 (1094)
. .+++. ... .+...++..+-.+..|+|.+.|+....... .+..... -.-....+.-+++++
T Consensus 180 ~~~~~~~vf~~~~~~v~~rP--~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~ 257 (352)
T TIGR02658 180 PKIKPTEVFHPEDEYLINHP--AYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR 257 (352)
T ss_pred eEEeeeeeecCCccccccCC--ceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC
Confidence 2 23322 111 111213554444455999999965443221 1110000 000223344589998
Q ss_pred CccEEEEEEC---------CCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC---EEEEEE-cCCeEEEEECCCCcEEEE
Q 001349 992 GLVYTASTSL---------DGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE---LVYLGC-KGGTVEIWDQKRQIRIET 1058 (1094)
Q Consensus 992 ~~~~las~s~---------Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd---~l~sgs-~dg~I~vwd~~t~~~~~~ 1058 (1094)
++..+..... .++.|.++|..+++.+..+..+..+..+++++| .+++.. .++.|.|+|..+++.+.+
T Consensus 258 dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~ 337 (352)
T TIGR02658 258 ARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSS 337 (352)
T ss_pred CCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEee
Confidence 8766665321 124899999999999999998889999999998 556555 578999999999999998
Q ss_pred e
Q 001349 1059 L 1059 (1094)
Q Consensus 1059 l 1059 (1094)
+
T Consensus 338 i 338 (352)
T TIGR02658 338 V 338 (352)
T ss_pred e
Confidence 8
No 267
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.85 E-value=4.2e-06 Score=98.40 Aligned_cols=291 Identities=14% Similarity=0.145 Sum_probs=168.0
Q ss_pred cCcEEEEeeCCCCeEEEeCCcceeeccc--CC----------CcE-EEEEEeCCEEEEEECCCeEEEEecCCCcceeEEE
Q 001349 784 EMVKVLSNGHDSSADFWNHRELVHVDSS--EN----------GKV-LSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQ 850 (1094)
Q Consensus 784 d~~~l~s~s~dg~I~vWd~~~~~~~~~~--h~----------~~V-~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~ 850 (1094)
.+.+++.++.+|.+.-+|..+....... .. ..+ ..+....+.++.++.+|.+..+|..+| +.+..
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG--~~~W~ 145 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDG--EVAWQ 145 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCC--CCccc
Confidence 4567777777788777776532211111 00 011 123455578888999999999999999 56665
Q ss_pred ecccCCCeEE-EEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCcc----ceeeeecCceEEE-eeCCCeEEEEE
Q 001349 851 IREHTKAVTG-LAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQ----IQNLAVSNSILCF-IPQGAGIKVHL 924 (1094)
Q Consensus 851 l~~H~~~V~s-v~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~----V~~v~~~~~~~~f-spdg~~l~~~~ 924 (1094)
..... .+.+ ..+ .+..++.++.+|.+.-+|..+|+..-......... ..+-......+.+ ..+|...+...
T Consensus 146 ~~~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 146 TKVAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLM 222 (394)
T ss_pred ccCCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEc
Confidence 54332 2221 112 24567778889999999999987332222111000 0000001111112 12222222222
Q ss_pred eCCeEEEEcCC--C------------CceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEe
Q 001349 925 RNGKTKLLNSS--K------------YPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVH 990 (1094)
Q Consensus 925 ~~g~i~l~~~~--~------------~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs 990 (1094)
.+|.. +|... . ....-.+.++.+++++.+|.+..+|..+|+.+.... + + ....+...
T Consensus 223 ~~G~~-~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~----~-~---~~~~~~~~ 293 (394)
T PRK11138 223 EQGQL-IWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE----Y-G---SVNDFAVD 293 (394)
T ss_pred cCChh-hheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeec----C-C---CccCcEEE
Confidence 23322 23211 0 011222446889999999999999999998764321 1 1 11123333
Q ss_pred CCccEEEEEECCCCEEEEEECCCCeEEEEecC--CCCEEEEEEeCCEEEEEEcCCeEEEEECCCCcEEEEecccCCcceE
Q 001349 991 NGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT--LSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQ 1068 (1094)
Q Consensus 991 ~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~--~~~v~~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~ 1068 (1094)
.+..|+ ++.+| .+..+|..+|+.+..... .....+..+..+.++.++.+|.|+++|..+|+.+...+.+......
T Consensus 294 ~~~vy~--~~~~g-~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s 370 (394)
T PRK11138 294 GGRIYL--VDQND-RVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLS 370 (394)
T ss_pred CCEEEE--EcCCC-eEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccee
Confidence 443333 34555 899999999987765542 2234445566778999999999999999999988877532222222
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1069 CMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1069 ~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
...+ .+..|+.++.||.|+.++.
T Consensus 371 ~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 371 EPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCEE--ECCEEEEEeCCceEEEEeC
Confidence 2223 2457888999999998875
No 268
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.84 E-value=2.4e-06 Score=110.95 Aligned_cols=247 Identities=16% Similarity=0.154 Sum_probs=145.1
Q ss_pred EEEEEeC--C-EEEEEECCCeEEEEecCCCcceeEEEecc--------------cCCCeEEEEEecCCCEEEEEe-CCCc
Q 001349 817 LSIACFR--D-KIFSGHSDGTIKVWTGRGSILHLIQQIRE--------------HTKAVTGLAILQSGEMLYSGS-LDKT 878 (1094)
Q Consensus 817 ~~l~fsp--d-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~--------------H~~~V~sv~fspdg~~LaSgs-~Dgt 878 (1094)
..+++++ + ++++-+.++.|++||..+. .+..+.+ +-.....|+|+++++.|+.+. ..+.
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~---~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~ 647 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN---FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHA 647 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC---EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCce
Confidence 3456654 2 6677778889999998654 2333322 112357899999888666554 4578
Q ss_pred EEEEECCCCceEEEEecccCcc--------ceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEE
Q 001349 879 ARVWSIGNEEIHCVQVHDIKDQ--------IQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYC 950 (1094)
Q Consensus 879 I~vWdi~~~~~~~~~~~~~~~~--------V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~s 950 (1094)
|+++|..++....+........ .......|..++|+|++..+ +++
T Consensus 648 Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~L---------------------------yVa 700 (1057)
T PLN02919 648 LREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKV---------------------------YIA 700 (1057)
T ss_pred EEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeE---------------------------EEE
Confidence 9999998875444332111000 00000111223344422211 334
Q ss_pred EEcCCeEEEEECCCCceeEEeccce---eecC------CCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEe-
Q 001349 951 GCQDGAIQEIDLATGTFATIQTGHR---KLLG------KANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSL- 1020 (1094)
Q Consensus 951 gs~Dg~I~iwDl~~~~~~~~~~~~~---~~~~------h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~- 1020 (1094)
.+.++.|++||..++.... +.+.. ...+ .-...+.+++++++..+..+..+++.|++||+.++......
T Consensus 701 d~~~~~I~v~d~~~g~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~g 779 (1057)
T PLN02919 701 MAGQHQIWEYNISDGVTRV-FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAG 779 (1057)
T ss_pred ECCCCeEEEEECCCCeEEE-EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEe
Confidence 4455667777766554321 11100 0001 11345679999988754444444469999999876532110
Q ss_pred ------------c-C--------CCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEeccc------------CCc
Q 001349 1021 ------------P-T--------LSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTG------------TSG 1065 (1094)
Q Consensus 1021 ------------~-~--------~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~------------h~~ 1065 (1094)
. . .....+++++++ .+++-+.++.|++||..++........+ .-.
T Consensus 780 g~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~ 859 (1057)
T PLN02919 780 GDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLS 859 (1057)
T ss_pred cccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccC
Confidence 0 0 113467888887 5666677899999999887655433211 112
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1066 KVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1066 ~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
....++++++|+++++-+.+++|++||+.
T Consensus 860 ~P~GIavd~dG~lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 860 EPAGLALGENGRLFVADTNNSLIRYLDLN 888 (1057)
T ss_pred CceEEEEeCCCCEEEEECCCCEEEEEECC
Confidence 57899999999999999999999999973
No 269
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.83 E-value=3.9e-06 Score=98.14 Aligned_cols=254 Identities=15% Similarity=0.203 Sum_probs=154.1
Q ss_pred EEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccC
Q 001349 819 IACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIK 898 (1094)
Q Consensus 819 l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~ 898 (1094)
.....+.++.++.+|.|..+|..+| +.+....-.......... ++..++.++.||.+..||..+|+..-. ....
T Consensus 61 p~v~~~~v~v~~~~g~v~a~d~~tG--~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~--~~~~ 134 (377)
T TIGR03300 61 PAVAGGKVYAADADGTVVALDAETG--KRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWR--AKLS 134 (377)
T ss_pred eEEECCEEEEECCCCeEEEEEccCC--cEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeee--eccC
Confidence 3445679999999999999999999 566665433322222222 567888899999999999998863322 2222
Q ss_pred ccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCC-----------CCc------eEEEEeCCEEEEEEcCCeEEEEE
Q 001349 899 DQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS-----------KYP------KCLALVQGKVYCGCQDGAIQEID 961 (1094)
Q Consensus 899 ~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~-----------~~v------~~l~~s~~~l~sgs~Dg~I~iwD 961 (1094)
..+.+.. .. .+..+.+...++.+..++.. ... .+....++.++.+..+|.+..+|
T Consensus 135 ~~~~~~p-------~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald 206 (377)
T TIGR03300 135 SEVLSPP-------LV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALD 206 (377)
T ss_pred ceeecCC-------EE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEE
Confidence 2222111 00 12233333344444444321 111 12233457788999999999999
Q ss_pred CCCCceeEEeccceeecCCC--C---Ce-EEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCCE
Q 001349 962 LATGTFATIQTGHRKLLGKA--N---PV-HALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSEL 1035 (1094)
Q Consensus 962 l~~~~~~~~~~~~~~~~~h~--~---~V-~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd~ 1035 (1094)
..+|+.......... .+.. . .+ .+..+..+ .+..++.+| .+..||..+|+.+....... .....+..+.
T Consensus 207 ~~tG~~~W~~~~~~~-~g~~~~~~~~~~~~~p~~~~~--~vy~~~~~g-~l~a~d~~tG~~~W~~~~~~-~~~p~~~~~~ 281 (377)
T TIGR03300 207 LQTGQPLWEQRVALP-KGRTELERLVDVDGDPVVDGG--QVYAVSYQG-RVAALDLRSGRVLWKRDASS-YQGPAVDDNR 281 (377)
T ss_pred ccCCCEeeeeccccC-CCCCchhhhhccCCccEEECC--EEEEEEcCC-EEEEEECCCCcEEEeeccCC-ccCceEeCCE
Confidence 999987643221100 0000 0 00 11122333 334445565 89999999998887766322 3345566778
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1036 VYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1036 l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
+++++.+|.++.+|..+|+.+............+... .+..+++++.+|.|++||.
T Consensus 282 vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~ 337 (377)
T TIGR03300 282 LYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSR 337 (377)
T ss_pred EEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEEC
Confidence 9999999999999999998876652111112222222 3678899999999999985
No 270
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.82 E-value=1.4e-06 Score=102.93 Aligned_cols=235 Identities=10% Similarity=-0.031 Sum_probs=137.4
Q ss_pred CeEEEeCC-cceeecccCCCcEEEEEEeCC--E---EEEEECCC--eEEEEecCCCcceeEEEecccCCCeEEEEEecCC
Q 001349 796 SADFWNHR-ELVHVDSSENGKVLSIACFRD--K---IFSGHSDG--TIKVWTGRGSILHLIQQIREHTKAVTGLAILQSG 867 (1094)
Q Consensus 796 ~I~vWd~~-~~~~~~~~h~~~V~~l~fspd--~---LaSgs~Dg--~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg 867 (1094)
.|.+.|.+ .....+..+...+..-.|+|| . +++...+| .|.+.++.++....+..+. +......|||||
T Consensus 166 ~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~---g~~~~p~wSPDG 242 (428)
T PRK01029 166 ELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQ---GNQLMPTFSPRK 242 (428)
T ss_pred eEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCC---CCccceEECCCC
Confidence 45555655 222334445566778899997 3 23444444 5777789888544444443 345568999999
Q ss_pred CEEEEEeC-----CCcEEEEECCCC---ceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCce
Q 001349 868 EMLYSGSL-----DKTARVWSIGNE---EIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPK 939 (1094)
Q Consensus 868 ~~LaSgs~-----DgtI~vWdi~~~---~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~ 939 (1094)
+.|+..+. |..+.+|++.++ ....+... ....... ..|+|||+.++...
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~-~~~~~~~-------p~wSPDG~~Laf~s--------------- 299 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNE-AFGTQGN-------PSFSPDGTRLVFVS--------------- 299 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecC-CCCCcCC-------eEECCCCCEEEEEE---------------
Confidence 98886653 223445776653 21211111 1111122 34999998764432
Q ss_pred EEEEeCCEEEEEEcCCe--EEEEECCC-CceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCC--CEEEEEECCCC
Q 001349 940 CLALVQGKVYCGCQDGA--IQEIDLAT-GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG--AAVKMWSTSNY 1014 (1094)
Q Consensus 940 ~l~~s~~~l~sgs~Dg~--I~iwDl~~-~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg--~~I~iwd~~~~ 1014 (1094)
..+|. |.++++.. +... ..+..+...+....|+||+..++..+.++ ..|.+||+.++
T Consensus 300 ------------~~~g~~~ly~~~~~~~g~~~------~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g 361 (428)
T PRK01029 300 ------------NKDGRPRIYIMQIDPEGQSP------RLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATG 361 (428)
T ss_pred ------------CCCCCceEEEEECcccccce------EEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence 22333 33334432 1111 22223334567889999999888765442 37999999888
Q ss_pred eEEEEecCCCCEEEEEEeCC--EEE-EEEc--CCeEEEEECCCCcEEEEecccCCcceEEEEEcCCC
Q 001349 1015 NMVGSLPTLSEVRAMVVSSE--LVY-LGCK--GGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNE 1076 (1094)
Q Consensus 1015 ~~~~~~~~~~~v~~l~~spd--~l~-sgs~--dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg 1076 (1094)
+..........+....|+|| .++ ++.. .+.|++||+.+++..... ...+.+...+|+|-.
T Consensus 362 ~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt--~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 362 RDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV--IGSGEKRFPSWGAFP 426 (428)
T ss_pred CeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee--cCCCcccCceecCCC
Confidence 76543334446778899998 444 3332 357999999888754444 234557788888754
No 271
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.82 E-value=1.1e-06 Score=98.29 Aligned_cols=295 Identities=12% Similarity=0.154 Sum_probs=176.9
Q ss_pred cccccccCcEEEEeeCCCCeEEEeCCcceeecccCCCcEEEEEEeCC--EEEEEECCC---------------eEEEEec
Q 001349 778 YSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD--KIFSGHSDG---------------TIKVWTG 840 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg---------------~I~vWd~ 840 (1094)
+..+++-|.++++... ..|.+|..........-....|..+.|+|+ +|.|-+..+ .+.|||.
T Consensus 37 ~~~~SP~G~~l~~~~~-~~V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~ 115 (561)
T COG5354 37 YVSESPLGTYLFSEHA-AGVECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDI 115 (561)
T ss_pred heeecCcchheehhhc-cceEEccccchhheeeeecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEec
Confidence 4556677777776544 457789877433444444567899999996 888876544 4999999
Q ss_pred CCCcceeEEEecccCCC--eE-EEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccC-ccceeeeecCc-----eE
Q 001349 841 RGSILHLIQQIREHTKA--VT-GLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIK-DQIQNLAVSNS-----IL 911 (1094)
Q Consensus 841 ~t~~~~~~~~l~~H~~~--V~-sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~-~~V~~v~~~~~-----~~ 911 (1094)
.++ ..+..+.+-..+ .| -+.|+-+.++++=... ..++|+++ ++..........+ ..+....+++. .+
T Consensus 116 ~sg--~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~-~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la 191 (561)
T COG5354 116 ASG--MIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG-SSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELA 191 (561)
T ss_pred cCc--eeEeeccccCCcccccceeeeeecchhhhhhcc-CeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEE
Confidence 999 777777766665 66 7889988877765533 35999997 4432222222212 34445553332 22
Q ss_pred EEeeCCCeEEEEEeCCeEEEEcCCC------------CceEEEEeC--CEEEE-----------EEcCCeEEEEECCCCc
Q 001349 912 CFIPQGAGIKVHLRNGKTKLLNSSK------------YPKCLALVQ--GKVYC-----------GCQDGAIQEIDLATGT 966 (1094)
Q Consensus 912 ~fspdg~~l~~~~~~g~i~l~~~~~------------~v~~l~~s~--~~l~s-----------gs~Dg~I~iwDl~~~~ 966 (1094)
.|.|.-. ...+.+.+|.... .-..+.|+. +.+.+ -.....++++++....
T Consensus 192 ~~tPEk~-----~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~ 266 (561)
T COG5354 192 YWTPEKL-----NKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS 266 (561)
T ss_pred EEccccC-----CCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc
Confidence 2222210 1123344444321 111222221 11111 0123456777776333
Q ss_pred eeEEeccceeecCCCCCeEEEEEeCCccEEEEEE-CCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcC-
Q 001349 967 FATIQTGHRKLLGKANPVHALQVHNGLVYTASTS-LDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKG- 1042 (1094)
Q Consensus 967 ~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s-~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~d- 1042 (1094)
.. ...+-.++|..++|.|.+..++..+ .....+.++|++.. ....+. ...=..+.|+|. +++.++.|
T Consensus 267 i~-------V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P-e~~rNT~~fsp~~r~il~agF~n 337 (561)
T COG5354 267 IP-------VEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP-EQKRNTIFFSPHERYILFAGFDN 337 (561)
T ss_pred cc-------eeccccccceeeeecccCCceeEEecccccceeecccccc-eEEecC-CcccccccccCcccEEEEecCCc
Confidence 22 1124468999999988766655554 33358999999866 333333 333456778887 66665544
Q ss_pred --CeEEEEECCCCcEEE-EecccCCcceEEEEEcCCCCEEEEEeC------CCcEEEEeCC
Q 001349 1043 --GTVEIWDQKRQIRIE-TLQTGTSGKVQCMALDDNEEFLVIGTS------DGRIQAWGLS 1094 (1094)
Q Consensus 1043 --g~I~vwd~~t~~~~~-~l~~~h~~~I~~l~~Spdg~~L~sgs~------DG~I~iWdls 1094 (1094)
|.|-+||......+. .+. +. ..+-+.|+|||+++.+... |..|+|||+.
T Consensus 338 l~gni~i~~~~~rf~~~~~~~-~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~ 395 (561)
T COG5354 338 LQGNIEIFDPAGRFKVAGAFN-GL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY 395 (561)
T ss_pred cccceEEeccCCceEEEEEee-cC--CceEeeccCCceEEEecCCCcccccCcceEEEEec
Confidence 789999987765444 552 32 3466789999999887643 7889999974
No 272
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.81 E-value=3.2e-09 Score=80.82 Aligned_cols=39 Identities=38% Similarity=0.994 Sum_probs=35.8
Q ss_pred ccCccccccCcE-EcCCcccccHHhHHHHHH-hCCCCCCCC
Q 001349 166 CPITTHIFDDPV-TLETGQTYERRAIQEWIE-RGNSSCPIT 204 (1094)
Q Consensus 166 CpIc~~~~~dPv-~~~cGhtfc~~ci~~~~~-~~~~~CP~c 204 (1094)
||||++.+.+|+ +++|||+||+.||.+|++ .+...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 889999999999999999 555679987
No 273
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.81 E-value=9.3e-06 Score=93.50 Aligned_cols=259 Identities=14% Similarity=0.189 Sum_probs=153.4
Q ss_pred ccccccCcEEEEeeC----CCCeEEEeCCc------ceeecccCCCcEEEEEEeCC--EEEEEE-CCCeEEEEecCC-Cc
Q 001349 779 SPLAFEMVKVLSNGH----DSSADFWNHRE------LVHVDSSENGKVLSIACFRD--KIFSGH-SDGTIKVWTGRG-SI 844 (1094)
Q Consensus 779 ~~~~~d~~~l~s~s~----dg~I~vWd~~~------~~~~~~~h~~~V~~l~fspd--~LaSgs-~Dg~I~vWd~~t-~~ 844 (1094)
..+.+++.+|.+... ++.|..|.+.. .+............++++|+ +|+++. .+|+|.++++.. +.
T Consensus 42 l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~ 121 (345)
T PF10282_consen 42 LAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGS 121 (345)
T ss_dssp EEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSE
T ss_pred EEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcc
Confidence 334557777777655 57888887652 22222223455667899886 666665 589999999986 42
Q ss_pred ceeEEEecc-----------cCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCc--eEEEEe--cccCccceeeeecC
Q 001349 845 LHLIQQIRE-----------HTKAVTGLAILQSGEMLYSGSL-DKTARVWSIGNEE--IHCVQV--HDIKDQIQNLAVSN 908 (1094)
Q Consensus 845 ~~~~~~l~~-----------H~~~V~sv~fspdg~~LaSgs~-DgtI~vWdi~~~~--~~~~~~--~~~~~~V~~v~~~~ 908 (1094)
......... -.....++.|+|||+++++... ...|.+|+++... +..... .........+.
T Consensus 122 l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~--- 198 (345)
T PF10282_consen 122 LGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLA--- 198 (345)
T ss_dssp EEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEE---
T ss_pred cceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEE---
Confidence 222211111 1245789999999998888753 3479999998764 322111 12222333443
Q ss_pred ceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECC--CCceeEEeccceee-cC--CCCC
Q 001349 909 SILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLA--TGTFATIQTGHRKL-LG--KANP 983 (1094)
Q Consensus 909 ~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~--~~~~~~~~~~~~~~-~~--h~~~ 983 (1094)
|+|+|+.+ .++.-.+++|.+|++. ++........ ..+ .+ ....
T Consensus 199 ----f~pdg~~~---------------------------Yv~~e~s~~v~v~~~~~~~g~~~~~~~~-~~~~~~~~~~~~ 246 (345)
T PF10282_consen 199 ----FSPDGKYA---------------------------YVVNELSNTVSVFDYDPSDGSLTEIQTI-STLPEGFTGENA 246 (345)
T ss_dssp ----E-TTSSEE---------------------------EEEETTTTEEEEEEEETTTTEEEEEEEE-ESCETTSCSSSS
T ss_pred ----EcCCcCEE---------------------------EEecCCCCcEEEEeecccCCceeEEEEe-eeccccccccCC
Confidence 88888764 3334456667777766 4432221110 111 01 1136
Q ss_pred eEEEEEeCCccEEEEEECCCCEEEEEECC--CCe--EEEEec-CCCCEEEEEEeCC--EEEEEE-cCCeEEEEEC--CCC
Q 001349 984 VHALQVHNGLVYTASTSLDGAAVKMWSTS--NYN--MVGSLP-TLSEVRAMVVSSE--LVYLGC-KGGTVEIWDQ--KRQ 1053 (1094)
Q Consensus 984 V~sl~fs~~~~~las~s~Dg~~I~iwd~~--~~~--~~~~~~-~~~~v~~l~~spd--~l~sgs-~dg~I~vwd~--~t~ 1053 (1094)
...+.++|++.++..+.....+|.+|++. ++. .+..+. .+...+.++++|+ +++++. .++.|.+|++ .+|
T Consensus 247 ~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG 326 (345)
T PF10282_consen 247 PAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTG 326 (345)
T ss_dssp EEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred ceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCC
Confidence 78899999999988887766799999993 333 344444 4566899999988 666665 6689999976 566
Q ss_pred cEEEEecccCCcceEEEEE
Q 001349 1054 IRIETLQTGTSGKVQCMAL 1072 (1094)
Q Consensus 1054 ~~~~~l~~~h~~~I~~l~~ 1072 (1094)
.+...-....-....||.|
T Consensus 327 ~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 327 KLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEEEEEEEEESSSEEEEEE
T ss_pred cEEEecccccCCCCEEEeC
Confidence 6544332122335666665
No 274
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.80 E-value=1e-06 Score=100.72 Aligned_cols=181 Identities=16% Similarity=0.184 Sum_probs=126.6
Q ss_pred CEEEEEECCCeEEEEecCCCcceeEEEecc--c-CCCeEEEEE--------------------ecCCCEEEEEeCCCcEE
Q 001349 824 DKIFSGHSDGTIKVWTGRGSILHLIQQIRE--H-TKAVTGLAI--------------------LQSGEMLYSGSLDKTAR 880 (1094)
Q Consensus 824 d~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~--H-~~~V~sv~f--------------------spdg~~LaSgs~DgtI~ 880 (1094)
+++|....||.+++||..++ +....|.. | ++..++..| +.|...++-|...|.|-
T Consensus 6 ~~~A~~~~~g~l~iw~t~~~--~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 6 DYFALSTGDGRLRIWDTAKN--QLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred heEeecCCCCeEEEEEccCc--eeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 37888888888888888877 33333321 1 223333333 22344677777788888
Q ss_pred EEECCCCceEEEEe-cccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC--CEEEEEEcCCeE
Q 001349 881 VWSIGNEEIHCVQV-HDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ--GKVYCGCQDGAI 957 (1094)
Q Consensus 881 vWdi~~~~~~~~~~-~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~--~~l~sgs~Dg~I 957 (1094)
+|++..|++..... ..|.++|..+ .+.+ +.|++++.|+.+
T Consensus 84 ~ys~~~g~it~~~st~~h~~~v~~~-------------------------------------~~~~~~~ciyS~~ad~~v 126 (541)
T KOG4547|consen 84 LYSVAGGEITAKLSTDKHYGNVNEI-------------------------------------LDAQRLGCIYSVGADLKV 126 (541)
T ss_pred EEEecCCeEEEEEecCCCCCcceee-------------------------------------ecccccCceEecCCceeE
Confidence 88888876443333 3344444443 3332 359999999999
Q ss_pred EEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--
Q 001349 958 QEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE-- 1034 (1094)
Q Consensus 958 ~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd-- 1034 (1094)
.+|+...+..+ ..+.+....+.+++++||+..+++++ ++|++||+.+++.+.+|+ |.+.|+++.|-.+
T Consensus 127 ~~~~~~~~~~~------~~~~~~~~~~~sl~is~D~~~l~~as---~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~ 197 (541)
T KOG4547|consen 127 VYILEKEKVII------RIWKEQKPLVSSLCISPDGKILLTAS---RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLID 197 (541)
T ss_pred EEEecccceee------eeeccCCCccceEEEcCCCCEEEecc---ceEEEEEccCceEEEEecCCCcceEEEEEEEecc
Confidence 99999998887 45555667899999999999999885 599999999999999999 6788999888543
Q ss_pred -----EEE-EEEcCCeEEEEECCC
Q 001349 1035 -----LVY-LGCKGGTVEIWDQKR 1052 (1094)
Q Consensus 1035 -----~l~-sgs~dg~I~vwd~~t 1052 (1094)
++. +...+..+.+|-+..
T Consensus 198 g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 198 GIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ccccceeeeccccccceeEEEEEc
Confidence 333 344556677886543
No 275
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.78 E-value=3.2e-07 Score=98.01 Aligned_cols=233 Identities=18% Similarity=0.251 Sum_probs=159.4
Q ss_pred ceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECC-CCceEEEEecccCccceeeeecCceEEEeeCCCeEEEE
Q 001349 845 LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIG-NEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVH 923 (1094)
Q Consensus 845 ~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~-~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~ 923 (1094)
...++.++||.+.|+....-|...-+++.+.|.++|||--+ .++...-..+..+.++..+. +.+....+.++
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~-------y~~e~~~L~vg 86 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAME-------YVSESRRLYVG 86 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEee-------eeccceEEEEE
Confidence 35667789999999999888888889999999999999644 44433333344566777776 88888999999
Q ss_pred EeCCeEEEEc----------------CCCCceEEEEe--CCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeE
Q 001349 924 LRNGKTKLLN----------------SSKYPKCLALV--QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVH 985 (1094)
Q Consensus 924 ~~~g~i~l~~----------------~~~~v~~l~~s--~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~ 985 (1094)
..+|++.-+. +...+..+.|+ +..+++.+.|..+.---.+.+..+..+ .+. ..-+
T Consensus 87 ~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y----~~~---~~~t 159 (404)
T KOG1409|consen 87 QDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGY----NFE---TPAS 159 (404)
T ss_pred EecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccce----Eee---ccCC
Confidence 9999887654 23456666665 356888888877765555544433110 010 0111
Q ss_pred EEEEeCCccEEEEEECCCCEEEEEEC--CCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEec
Q 001349 986 ALQVHNGLVYTASTSLDGAAVKMWST--SNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQ 1060 (1094)
Q Consensus 986 sl~fs~~~~~las~s~Dg~~I~iwd~--~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~ 1060 (1094)
.+.+.-. +...|...| .|..-.+ ..-.++.++. |.+.+++++|.+. .+++|..|..|.+||+...+-+....
T Consensus 160 ~~~~d~~--~~fvGd~~g-qvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el 236 (404)
T KOG1409|consen 160 ALQFDAL--YAFVGDHSG-QITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYEL 236 (404)
T ss_pred CCceeeE--EEEeccccc-ceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeee
Confidence 1111111 222222222 3332222 2344556666 7889999999987 89999999999999998766444444
Q ss_pred ccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1061 TGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1061 ~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
.+|.+.|..+..-+--+.+++++.||.|-+|+++
T Consensus 237 ~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 237 QGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred ccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 6899999999888888999999999999999974
No 276
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.78 E-value=2.5e-07 Score=98.62 Aligned_cols=273 Identities=12% Similarity=0.191 Sum_probs=165.1
Q ss_pred cCCCcEEEEEEeC--CEEEEEECCCeEEEEecCC---CcceeEEEecccCC------------CeEEEEEecCC--CEEE
Q 001349 811 SENGKVLSIACFR--DKIFSGHSDGTIKVWTGRG---SILHLIQQIREHTK------------AVTGLAILQSG--EMLY 871 (1094)
Q Consensus 811 ~h~~~V~~l~fsp--d~LaSgs~Dg~I~vWd~~t---~~~~~~~~l~~H~~------------~V~sv~fspdg--~~La 871 (1094)
...+-|.+|.|.. ++|+||+.+|.|.++.-.. +.......++.|.. .|..+.|.+++ ..+.
T Consensus 23 teadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 23 TEADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred chhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 3456788999986 4999999999999995432 23345556666653 58889999864 4677
Q ss_pred EEeCCCcEEEEECCCCceEEE----EecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEc--CCCCceEEEEeC
Q 001349 872 SGSLDKTARVWSIGNEEIHCV----QVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN--SSKYPKCLALVQ 945 (1094)
Q Consensus 872 Sgs~DgtI~vWdi~~~~~~~~----~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~--~~~~v~~l~~s~ 945 (1094)
..+.|++|++|.+.....+.- ........+.++.. ....+....+... ..+++. |.-.|.++.++.
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~----p~~~~~~~~vea~----prRv~aNaHtyhiNSIS~Ns 174 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRL----PVEGRHDLEVEAS----PRRVYANAHTYHINSISVNS 174 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeec----eeeccccceeeee----eeeeccccceeEeeeeeecC
Confidence 778899999999876432210 00001112222221 0122222221111 112222 345678888875
Q ss_pred -CEEEEEEcCCeEEEEECCCCcee-EEe-ccceeecCCCCCeEEEEEeCCcc-EEEEEECCCCEEEEEECCCCeEEE---
Q 001349 946 -GKVYCGCQDGAIQEIDLATGTFA-TIQ-TGHRKLLGKANPVHALQVHNGLV-YTASTSLDGAAVKMWSTSNYNMVG--- 1018 (1094)
Q Consensus 946 -~~l~sgs~Dg~I~iwDl~~~~~~-~~~-~~~~~~~~h~~~V~sl~fs~~~~-~las~s~Dg~~I~iwd~~~~~~~~--- 1018 (1094)
...+....|=.|.+|++.-...- .+. ..+..+..-+.-|++..|||... .++-.+..| +|++-|++...+..
T Consensus 175 D~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKG-tIrLcDmR~~aLCd~hs 253 (433)
T KOG1354|consen 175 DKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKG-TIRLCDMRQSALCDAHS 253 (433)
T ss_pred ccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCC-cEEEeechhhhhhcchh
Confidence 45777778899999998643221 110 00111222234688899998643 444444454 99999998532211
Q ss_pred -Eec-------------CCCCEEEEEEeCCEEEEEEcC-CeEEEEECC-CCcEEEEecccCCc------------c---e
Q 001349 1019 -SLP-------------TLSEVRAMVVSSELVYLGCKG-GTVEIWDQK-RQIRIETLQTGTSG------------K---V 1067 (1094)
Q Consensus 1019 -~~~-------------~~~~v~~l~~spd~l~sgs~d-g~I~vwd~~-t~~~~~~l~~~h~~------------~---I 1067 (1094)
.+. --..|..+.|++++-+.-+.| -+|++||+. ..+++.+++ -|.. . -
T Consensus 254 KlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~-vh~~lr~kLc~lYEnD~IfdK 332 (433)
T KOG1354|consen 254 KLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYP-VHEYLRSKLCSLYENDAIFDK 332 (433)
T ss_pred hhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEe-ehHhHHHHHHHHhhccchhhe
Confidence 111 024577889998833333444 799999994 455666663 3421 2 2
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1068 QCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1068 ~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
..++|+-++.+++||+..+.++++++
T Consensus 333 Fec~~sg~~~~v~TGsy~n~frvf~~ 358 (433)
T KOG1354|consen 333 FECSWSGNDSYVMTGSYNNVFRVFNL 358 (433)
T ss_pred eEEEEcCCcceEecccccceEEEecC
Confidence 46789999999999999999999984
No 277
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.78 E-value=2.9e-06 Score=90.09 Aligned_cols=245 Identities=16% Similarity=0.138 Sum_probs=156.5
Q ss_pred ccccccCcEEEE-eeCCCCeEEEeCCccee--ecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcceeEEEec
Q 001349 779 SPLAFEMVKVLS-NGHDSSADFWNHRELVH--VDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIR 852 (1094)
Q Consensus 779 ~~~~~d~~~l~s-~s~dg~I~vWd~~~~~~--~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~~~~l~ 852 (1094)
.-+..|..++++ ...++.|.+|++.+... ......+++.+++|||| .|.+..-|-.|.||.+.+.. . ..++
T Consensus 54 ieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~--~-~~~~ 130 (447)
T KOG4497|consen 54 IEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK--G-YLLP 130 (447)
T ss_pred eeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce--e-EEec
Confidence 344456665555 46678999999985432 33445678999999997 78888899999999999872 2 2233
Q ss_pred ccCCCeEEEEEecCCCEEEEEeCC------------------------------------CcEEEEECCCCceEEEEecc
Q 001349 853 EHTKAVTGLAILQSGEMLYSGSLD------------------------------------KTARVWSIGNEEIHCVQVHD 896 (1094)
Q Consensus 853 ~H~~~V~sv~fspdg~~LaSgs~D------------------------------------gtI~vWdi~~~~~~~~~~~~ 896 (1094)
-....+..++|+|||++.+.+++- ..+-|||.--. ..+...+
T Consensus 131 ~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Le--ykv~aYe 208 (447)
T KOG4497|consen 131 HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE--YKVYAYE 208 (447)
T ss_pred ccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhh--heeeeee
Confidence 234456889999999988776541 11222322110 0000111
Q ss_pred cCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCC-----------------------------------------
Q 001349 897 IKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS----------------------------------------- 935 (1094)
Q Consensus 897 ~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~----------------------------------------- 935 (1094)
..-.+..+ .|+|.++.+++++.|+.+++.+|-
T Consensus 209 ~~lG~k~v-------~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p 281 (447)
T KOG4497|consen 209 RGLGLKFV-------EWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTP 281 (447)
T ss_pred eccceeEE-------EeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCC
Confidence 11233333 389999999999999888766530
Q ss_pred -------------------------------------CCceEEEEeCCEEEEEE-cC---CeEEEEECCCCceeEEeccc
Q 001349 936 -------------------------------------KYPKCLALVQGKVYCGC-QD---GAIQEIDLATGTFATIQTGH 974 (1094)
Q Consensus 936 -------------------------------------~~v~~l~~s~~~l~sgs-~D---g~I~iwDl~~~~~~~~~~~~ 974 (1094)
-.+.-++|+.+.-+.+. .| +.+-+||++.-+...
T Consensus 282 ~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~a----- 356 (447)
T KOG4497|consen 282 TDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHA----- 356 (447)
T ss_pred CccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhh-----
Confidence 01233455543333332 23 357899998766532
Q ss_pred eeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcCC
Q 001349 975 RKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGG 1043 (1094)
Q Consensus 975 ~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg 1043 (1094)
+.....+|....|+|+...++.+... ..+.+|.......+..-..+..|..+.|.-+ .++..+.|.
T Consensus 357 --vLiQk~piraf~WdP~~prL~vctg~-srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 357 --VLIQKHPIRAFEWDPGRPRLVVCTGK-SRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred --hhhhccceeEEEeCCCCceEEEEcCC-ceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCc
Confidence 22344689999999988777766544 4799998876555555445678889998754 666666664
No 278
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=3e-09 Score=108.30 Aligned_cols=55 Identities=22% Similarity=0.520 Sum_probs=49.0
Q ss_pred ceeccCccccccCcEEcCCcccccHHhHHHHHHhC--CCCCCCCCcCCCCCCCCChhH
Q 001349 163 DFVCPITTHIFDDPVTLETGQTYERRAIQEWIERG--NSSCPITRQKLSSTKLPKTNY 218 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~--~~~CP~c~~~~~~~~~~~pN~ 218 (1094)
.|.|.||++.-+|||++.|||-||..||.+|+... ...||+|+..++.+.++ |=+
T Consensus 47 ~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vv-PlY 103 (230)
T KOG0823|consen 47 FFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVV-PLY 103 (230)
T ss_pred ceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEE-eee
Confidence 89999999999999999999999999999999853 33599999999988886 654
No 279
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=5.4e-09 Score=101.36 Aligned_cols=51 Identities=22% Similarity=0.608 Sum_probs=44.9
Q ss_pred ceeccCccccccC--cEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCC
Q 001349 163 DFVCPITTHIFDD--PVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLP 214 (1094)
Q Consensus 163 ~~~CpIc~~~~~d--Pv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~ 214 (1094)
-+.||||++-+.. ||.+.|||.||+.||...++.+ ..||.|++.++.++++
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~-~~CP~C~kkIt~k~~~ 183 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNT-NKCPTCRKKITHKQFH 183 (187)
T ss_pred ccCCCceecchhhccccccccchhHHHHHHHHHHHhC-CCCCCcccccchhhhe
Confidence 5899999999986 5668999999999999999884 4799999999888775
No 280
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.76 E-value=4.3e-06 Score=108.67 Aligned_cols=240 Identities=8% Similarity=0.038 Sum_probs=139.8
Q ss_pred CcEEEEeeCCCCeEEEeCCcceeecccC---------------CCcEEEEEEeCC--EEEEE-ECCCeEEEEecCCCcce
Q 001349 785 MVKVLSNGHDSSADFWNHRELVHVDSSE---------------NGKVLSIACFRD--KIFSG-HSDGTIKVWTGRGSILH 846 (1094)
Q Consensus 785 ~~~l~s~s~dg~I~vWd~~~~~~~~~~h---------------~~~V~~l~fspd--~LaSg-s~Dg~I~vWd~~t~~~~ 846 (1094)
+..+++-+.++.|++||.........+- -.....+++.++ .|+.+ ...+.|+++|..++
T Consensus 580 g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~--- 656 (1057)
T PLN02919 580 NRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNE--- 656 (1057)
T ss_pred CeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCC---
Confidence 4466666778889999987332211111 123578889864 44444 45678999999877
Q ss_pred eEEEeccc-----------------CCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCceEEEEecccCc------cce
Q 001349 847 LIQQIREH-----------------TKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKD------QIQ 902 (1094)
Q Consensus 847 ~~~~l~~H-----------------~~~V~sv~fsp-dg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~------~V~ 902 (1094)
.+.++.+- -..-+.++|+| ++.++++.+.++.|++||..++....+....... ...
T Consensus 657 ~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~ 736 (1057)
T PLN02919 657 TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTS 736 (1057)
T ss_pred EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCcccc
Confidence 23333210 11346899999 5667777788899999999887533222110000 000
Q ss_pred eeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccc-------e
Q 001349 903 NLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGH-------R 975 (1094)
Q Consensus 903 ~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~-------~ 975 (1094)
.....+..++|+|+|..+ +++-+.++.|++||+.++.......+. .
T Consensus 737 ~~~~~P~GIavspdG~~L---------------------------YVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~ 789 (1057)
T PLN02919 737 TSFAQPSGISLSPDLKEL---------------------------YIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLF 789 (1057)
T ss_pred ccccCccEEEEeCCCCEE---------------------------EEEECCCCeEEEEECCCCcEEEEEecccccCcccc
Confidence 011123334455555432 233344456666666554422111000 0
Q ss_pred eec--------CCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCC--------------CCEEEEEEeC
Q 001349 976 KLL--------GKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTL--------------SEVRAMVVSS 1033 (1094)
Q Consensus 976 ~~~--------~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~--------------~~v~~l~~sp 1033 (1094)
.+. ..-.....+++++++.+.++-+.+ +.|++||..++........+ .....+++++
T Consensus 790 ~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N-~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~ 868 (1057)
T PLN02919 790 KFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN-HKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE 868 (1057)
T ss_pred cccCCCCchhhhhccCCceeeEeCCCcEEEEECCC-CEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC
Confidence 000 011234588899988777776666 49999999887665433211 2467899988
Q ss_pred C--EEEEEEcCCeEEEEECCCCcE
Q 001349 1034 E--LVYLGCKGGTVEIWDQKRQIR 1055 (1094)
Q Consensus 1034 d--~l~sgs~dg~I~vwd~~t~~~ 1055 (1094)
+ .+++-+.++.|++||+.+++.
T Consensus 869 dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 869 NGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCCEEEEECCCCEEEEEECCCCcc
Confidence 7 566667889999999988764
No 281
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.76 E-value=4.2e-09 Score=79.61 Aligned_cols=36 Identities=28% Similarity=0.748 Sum_probs=23.1
Q ss_pred ccCccccccC----cEEcCCcccccHHhHHHHHHhC---CCCCC
Q 001349 166 CPITTHIFDD----PVTLETGQTYERRAIQEWIERG---NSSCP 202 (1094)
Q Consensus 166 CpIc~~~~~d----Pv~~~cGhtfc~~ci~~~~~~~---~~~CP 202 (1094)
||||.+ |.+ |++++|||+||+.||++++..+ ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 999 9999999999999999999864 23477
No 282
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.72 E-value=7.3e-07 Score=102.52 Aligned_cols=270 Identities=12% Similarity=0.086 Sum_probs=176.7
Q ss_pred cCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCc-------------ceeEEEecccCCCeEEEEEecCCCEEEEEeC
Q 001349 811 SENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI-------------LHLIQQIREHTKAVTGLAILQSGEMLYSGSL 875 (1094)
Q Consensus 811 ~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~-------------~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~ 875 (1094)
..+....|+.|+.+ +++.|+.||.++|-.+.+.. ...-+++.||.+.|.-+.|+.+.+.|-|...
T Consensus 12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt 91 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT 91 (1189)
T ss_pred CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence 34667899999985 99999999999999776431 1223567899999999999999999999999
Q ss_pred CCcEEEEECCCCceE-EEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEE--------EEcCC---CCceEEEE
Q 001349 876 DKTARVWSIGNEEIH-CVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTK--------LLNSS---KYPKCLAL 943 (1094)
Q Consensus 876 DgtI~vWdi~~~~~~-~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~--------l~~~~---~~v~~l~~ 943 (1094)
+|.|.||-+-.|.+. .......++-|.++. |..||..+.+...||.+. +|+.. .....+.+
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~Sms-------Wn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~w 164 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMS-------WNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLW 164 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCccEEEEEE-------EcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceee
Confidence 999999998776521 111122345566666 888888888888887664 44432 23345556
Q ss_pred eCCE--EEEEEcCCeEEEEECCCCcee-----EEeccceeecCCCCCeEEEEEe--------CCccEEEEEECCCCEEEE
Q 001349 944 VQGK--VYCGCQDGAIQEIDLATGTFA-----TIQTGHRKLLGKANPVHALQVH--------NGLVYTASTSLDGAAVKM 1008 (1094)
Q Consensus 944 s~~~--l~sgs~Dg~I~iwDl~~~~~~-----~~~~~~~~~~~h~~~V~sl~fs--------~~~~~las~s~Dg~~I~i 1008 (1094)
+++. ++.+-.+|.+++||....-.. ....+...+......|-.+.|. |+...++.+-..| .+.|
T Consensus 165 s~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nG-r~Qi 243 (1189)
T KOG2041|consen 165 SEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANG-RMQI 243 (1189)
T ss_pred cccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCc-eehh
Confidence 6532 566777899999986533111 0011111122222234455552 5777778777666 6666
Q ss_pred EECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcC---------CeEEEEECCCCcEEEEecccCCcceEEEEEcCCCC
Q 001349 1009 WSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKG---------GTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEE 1077 (1094)
Q Consensus 1009 wd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~d---------g~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~ 1077 (1094)
..-.+......+..+..+....|+++ .+++++.+ +.|.+|. .-|+.+.+++ -....|++++|-..|-
T Consensus 244 MR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlk-vpg~~It~lsWEg~gL 321 (1189)
T KOG2041|consen 244 MRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLK-VPGSCITGLSWEGTGL 321 (1189)
T ss_pred hhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEe-cCCceeeeeEEcCCce
Confidence 65444333334455677888999998 56666543 3455554 3467778885 4556899999987776
Q ss_pred EEEEEeCCCcEEEE
Q 001349 1078 FLVIGTSDGRIQAW 1091 (1094)
Q Consensus 1078 ~L~sgs~DG~I~iW 1091 (1094)
.++.+ .|+.|++=
T Consensus 322 riA~A-vdsfiyfa 334 (1189)
T KOG2041|consen 322 RIAIA-VDSFIYFA 334 (1189)
T ss_pred EEEEE-ecceEEEE
Confidence 66554 46666553
No 283
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.70 E-value=3e-06 Score=100.22 Aligned_cols=218 Identities=11% Similarity=0.021 Sum_probs=127.2
Q ss_pred CeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCE--E-EEEeCCC--cEEEEECCCCceEEEEecccCccceeeeec
Q 001349 833 GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEM--L-YSGSLDK--TARVWSIGNEEIHCVQVHDIKDQIQNLAVS 907 (1094)
Q Consensus 833 g~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~--L-aSgs~Dg--tI~vWdi~~~~~~~~~~~~~~~~V~~v~~~ 907 (1094)
+.|.+.|..++.. +.+..+...+.+-.|||||+. + ++...+| .|.+.++.+++...+... ......
T Consensus 165 ~~l~~~d~dG~~~---~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~--~g~~~~---- 235 (428)
T PRK01029 165 GELWSVDYDGQNL---RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL--QGNQLM---- 235 (428)
T ss_pred ceEEEEcCCCCCc---eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC--CCCccc----
Confidence 4677778877632 334445556678899999975 2 2444443 577778888764444332 222222
Q ss_pred CceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCC---ceeEEeccceeecCCCCCe
Q 001349 908 NSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATG---TFATIQTGHRKLLGKANPV 984 (1094)
Q Consensus 908 ~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~---~~~~~~~~~~~~~~h~~~V 984 (1094)
..|+|||+.++...... |..|..+..||+.++ ..... ..++....
T Consensus 236 ---p~wSPDG~~Laf~s~~~-----------------------g~~di~~~~~~~~~g~~g~~~~l------t~~~~~~~ 283 (428)
T PRK01029 236 ---PTFSPRKKLLAFISDRY-----------------------GNPDLFIQSFSLETGAIGKPRRL------LNEAFGTQ 283 (428)
T ss_pred ---eEECCCCCEEEEEECCC-----------------------CCcceeEEEeecccCCCCcceEe------ecCCCCCc
Confidence 23999999876543210 111233445666543 22111 11122234
Q ss_pred EEEEEeCCccEEEEEECCCCEEEEE--ECCC-CeEEEEec-CCCCEEEEEEeCC--EEEEEEc-C--CeEEEEECCCCcE
Q 001349 985 HALQVHNGLVYTASTSLDGAAVKMW--STSN-YNMVGSLP-TLSEVRAMVVSSE--LVYLGCK-G--GTVEIWDQKRQIR 1055 (1094)
Q Consensus 985 ~sl~fs~~~~~las~s~Dg~~I~iw--d~~~-~~~~~~~~-~~~~v~~l~~spd--~l~sgs~-d--g~I~vwd~~t~~~ 1055 (1094)
....|+||+..++..+..++...+| ++.. +.....+. +...+....|+|| .++..+. + ..|++||+.+++.
T Consensus 284 ~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~ 363 (428)
T PRK01029 284 GNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD 363 (428)
T ss_pred CCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe
Confidence 5679999999877766433344555 4432 22334344 3456678899998 4554433 2 4799999998876
Q ss_pred EEEecccCCcceEEEEEcCCCCEEEEEeC---CCcEEEEeC
Q 001349 1056 IETLQTGTSGKVQCMALDDNEEFLVIGTS---DGRIQAWGL 1093 (1094)
Q Consensus 1056 ~~~l~~~h~~~I~~l~~Spdg~~L~sgs~---DG~I~iWdl 1093 (1094)
.... .....+....|+|||+.|+..+. ++.|++||+
T Consensus 364 ~~Lt--~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl 402 (428)
T PRK01029 364 YQLT--TSPENKESPSWAIDSLHLVYSAGNSNESELYLISL 402 (428)
T ss_pred EEcc--CCCCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence 4333 22345778999999998875433 345777775
No 284
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.68 E-value=5.9e-06 Score=96.46 Aligned_cols=303 Identities=14% Similarity=0.144 Sum_probs=189.1
Q ss_pred CcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeC-------------C-EEEEEECCCeEEEEecCCCcceeE
Q 001349 785 MVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFR-------------D-KIFSGHSDGTIKVWTGRGSILHLI 848 (1094)
Q Consensus 785 ~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fsp-------------d-~LaSgs~Dg~I~vWd~~t~~~~~~ 848 (1094)
+..++.|+. ..|.|-|.. +.++.+..|...|+.+.|.| + .|+++...|.|.+||+..+ ..+
T Consensus 26 ~GLiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~--s~~ 102 (1062)
T KOG1912|consen 26 SGLIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA--SVI 102 (1062)
T ss_pred cceEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh--hhh
Confidence 345666555 456666765 56788889999999999986 1 6888999999999999988 677
Q ss_pred EEecccCCCeEEEEEec---CC-CEEEEEeCCCcEEEEECCCCceEEEEecccCcc-ceeeeecC---ce----------
Q 001349 849 QQIREHTKAVTGLAILQ---SG-EMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQ-IQNLAVSN---SI---------- 910 (1094)
Q Consensus 849 ~~l~~H~~~V~sv~fsp---dg-~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~-V~~v~~~~---~~---------- 910 (1094)
..+..|.++|..+.|-+ +. ..|+.-....++.+|+..+|+.. ..+..... ..++.+.| ..
T Consensus 103 ~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~--Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~v 180 (1062)
T KOG1912|consen 103 NWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKF--WKYDYSHEILSCFRVDPFDSRHFCVLGSKGFV 180 (1062)
T ss_pred hhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCcee--eccccCCcceeeeeeCCCCcceEEEEccCceE
Confidence 78888999999999987 34 56677777789999999988621 11111111 11121111 11
Q ss_pred -------------------------------------------------------EEEeeCCCeEEEEEeCCeEEEEcC-
Q 001349 911 -------------------------------------------------------LCFIPQGAGIKVHLRNGKTKLLNS- 934 (1094)
Q Consensus 911 -------------------------------------------------------~~fspdg~~l~~~~~~g~i~l~~~- 934 (1094)
.+|+|.-+.+........+.++|.
T Consensus 181 l~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle 260 (1062)
T KOG1912|consen 181 LSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLE 260 (1062)
T ss_pred EEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcch
Confidence 112222222222233333333332
Q ss_pred -----------CCCceEEEEeC----CEEEEEEcCCeEEEEECCC----------------CceeEEeccce--------
Q 001349 935 -----------SKYPKCLALVQ----GKVYCGCQDGAIQEIDLAT----------------GTFATIQTGHR-------- 975 (1094)
Q Consensus 935 -----------~~~v~~l~~s~----~~l~sgs~Dg~I~iwDl~~----------------~~~~~~~~~~~-------- 975 (1094)
.+.+.-+.+-| +.++++..||.+.+|-.+. +..........
T Consensus 261 ~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~ 340 (1062)
T KOG1912|consen 261 YECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGA 340 (1062)
T ss_pred hhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceee
Confidence 12222233322 3488888888888886543 11110000000
Q ss_pred -------------------------------------------------------------eecCCCCCeEEEEEeC---
Q 001349 976 -------------------------------------------------------------KLLGKANPVHALQVHN--- 991 (1094)
Q Consensus 976 -------------------------------------------------------------~~~~h~~~V~sl~fs~--- 991 (1094)
...+|....++...+|
T Consensus 341 ~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~ 420 (1062)
T KOG1912|consen 341 SCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPE 420 (1062)
T ss_pred cCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcc
Confidence 0012333333332221
Q ss_pred --------Cc-------cEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC-EEEEEE----------cCCe
Q 001349 992 --------GL-------VYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE-LVYLGC----------KGGT 1044 (1094)
Q Consensus 992 --------~~-------~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd-~l~sgs----------~dg~ 1044 (1094)
.+ .+++.|...| +|.++|+.++.....+. |...|.++.|-++ .+++.+ .-+.
T Consensus 421 ~t~~~~~p~~n~~~~~~pLvAvGT~sG-TV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~ 499 (1062)
T KOG1912|consen 421 LTKVENDPGGNTPAGTVPLVAVGTNSG-TVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRND 499 (1062)
T ss_pred cceeecCCCCCccceeeeeEEeecCCc-eEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeee
Confidence 11 2345555555 99999999998888887 8889999999887 344433 2346
Q ss_pred EEEEECCCCcE--EEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1045 VEIWDQKRQIR--IETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1045 I~vwd~~t~~~--~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
+.|-|+++|.. ++.++.....+|..+..|..|+||+..-.|.-+.+||+
T Consensus 500 l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~ 550 (1062)
T KOG1912|consen 500 LVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDL 550 (1062)
T ss_pred EEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhh
Confidence 77889988853 33344445669999999999999999999999999987
No 285
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.67 E-value=1.2e-08 Score=107.30 Aligned_cols=47 Identities=21% Similarity=0.458 Sum_probs=40.6
Q ss_pred CceeccCccccccCc--------EEcCCcccccHHhHHHHHHhCCCCCCCCCcCCC
Q 001349 162 KDFVCPITTHIFDDP--------VTLETGQTYERRAIQEWIERGNSSCPITRQKLS 209 (1094)
Q Consensus 162 ~~~~CpIc~~~~~dP--------v~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~ 209 (1094)
++..||||++.+.++ ++++|||.||+.||.+|+.. +.+||+||..+.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~ 227 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFI 227 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEee
Confidence 478999999987764 56799999999999999986 668999998775
No 286
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.67 E-value=1.4e-08 Score=80.85 Aligned_cols=46 Identities=30% Similarity=0.533 Sum_probs=40.7
Q ss_pred ceeccCccccccCcEEcCCccc-ccHHhHHHHHHhCCCCCCCCCcCCC
Q 001349 163 DFVCPITTHIFDDPVTLETGQT-YERRAIQEWIERGNSSCPITRQKLS 209 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~~~cGht-fc~~ci~~~~~~~~~~CP~c~~~~~ 209 (1094)
+..|+||++-+.++++++|||. ||..|+.+|+.. ...||.||+++.
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKR-KKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT-TSBBTTTTBB-S
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhccc-CCCCCcCChhhc
Confidence 6889999999999999999999 999999999985 668999999875
No 287
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=7e-08 Score=107.51 Aligned_cols=216 Identities=13% Similarity=0.166 Sum_probs=146.7
Q ss_pred eeecccCCCcEEEEEEeC--CEEEEEECCCeEEEEecCCC-----cceeEEEecccCCCeEEEEEecCCCEEEEEeCCCc
Q 001349 806 VHVDSSENGKVLSIACFR--DKIFSGHSDGTIKVWTGRGS-----ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKT 878 (1094)
Q Consensus 806 ~~~~~~h~~~V~~l~fsp--d~LaSgs~Dg~I~vWd~~t~-----~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~Dgt 878 (1094)
...+.||...|..++-.. +-+++++.|.+|++|.++.. ...|..+++.|+.+|.++.|-.+-++++++ ||-
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 345678999998887654 38999999999999987631 225888999999999999999988887754 788
Q ss_pred EEEEECCCCceEE-EEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCE--EEEEEcCC
Q 001349 879 ARVWSIGNEEIHC-VQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGK--VYCGCQDG 955 (1094)
Q Consensus 879 I~vWdi~~~~~~~-~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~--l~sgs~Dg 955 (1094)
|.+||.--|.... +...+..+. .+.|.|+.-.+.. ++.++...
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a----------------------------------~~~ikcl~nv~~~iliAgcsaeS 851 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGA----------------------------------GGNIKCLENVDRHILIAGCSAES 851 (1034)
T ss_pred ceeecccccchhHhhhcCcccCC----------------------------------CceeEecccCcchheeeeccchh
Confidence 9999976553111 110000111 1223333332222 33347788
Q ss_pred eEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecC-CCCEEEEEEeCC
Q 001349 956 AIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT-LSEVRAMVVSSE 1034 (1094)
Q Consensus 956 ~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~-~~~v~~l~~spd 1034 (1094)
+|+++|.+.+........- .-.+....+.+++..+.|.+++.+-..| +|.+.|.++|+.+.++.. .-....++--.|
T Consensus 852 TVKl~DaRsce~~~E~kVc-na~~Pna~~R~iaVa~~GN~lAa~LSnG-ci~~LDaR~G~vINswrpmecdllqlaapsd 929 (1034)
T KOG4190|consen 852 TVKLFDARSCEWTCELKVC-NAPGPNALTRAIAVADKGNKLAAALSNG-CIAILDARNGKVINSWRPMECDLLQLAAPSD 929 (1034)
T ss_pred hheeeecccccceeeEEec-cCCCCchheeEEEeccCcchhhHHhcCC-cEEEEecCCCceeccCCcccchhhhhcCchh
Confidence 9999999988766443211 1123446688999999999988887776 999999999998887662 223333443334
Q ss_pred -EEEEEEcCCeEEE-EECCCCcEEEEe
Q 001349 1035 -LVYLGCKGGTVEI-WDQKRQIRIETL 1059 (1094)
Q Consensus 1035 -~l~sgs~dg~I~v-wd~~t~~~~~~l 1059 (1094)
.++....|.++.| |..-+|......
T Consensus 930 q~L~~saldHslaVnWhaldgimh~q~ 956 (1034)
T KOG4190|consen 930 QALAQSALDHSLAVNWHALDGIMHLQD 956 (1034)
T ss_pred HHHHhhcccceeEeeehhcCCeeeecc
Confidence 6666777888888 887776554444
No 288
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=9.9e-09 Score=107.49 Aligned_cols=52 Identities=21% Similarity=0.494 Sum_probs=46.8
Q ss_pred CceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCC
Q 001349 162 KDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLP 214 (1094)
Q Consensus 162 ~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~ 214 (1094)
..+.|.||++-+.+|--++|||-||..||..|... ...||.||+.+++..++
T Consensus 238 a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~pskvi 289 (293)
T KOG0317|consen 238 ATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQPSKVI 289 (293)
T ss_pred CCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCCccee
Confidence 36899999999999999999999999999999987 44699999999877654
No 289
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.66 E-value=1.3e-07 Score=105.35 Aligned_cols=263 Identities=14% Similarity=0.197 Sum_probs=161.8
Q ss_pred cCcEEEEeeCCCCeEEEeCC---------cceeecccCCCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEe--c
Q 001349 784 EMVKVLSNGHDSSADFWNHR---------ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQI--R 852 (1094)
Q Consensus 784 d~~~l~s~s~dg~I~vWd~~---------~~~~~~~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l--~ 852 (1094)
+-+.+++++.|++|++|.++ .+..++..|+.+|.++.|-.+.-..++.||.|.+||.--+ ..+... .
T Consensus 746 NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giHlWDPFig--r~Laq~~da 823 (1034)
T KOG4190|consen 746 NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIHLWDPFIG--RLLAQMEDA 823 (1034)
T ss_pred cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcceeeccccc--chhHhhhcC
Confidence 45678999999999999876 3667888999999999999986556677899999998766 333322 1
Q ss_pred ccCCCeEEEEEec--CCCEEEEE-eCCCcEEEEECCCCceEEEEecc-cCccceeeeecCceEEEeeCCCeEEEEEeCCe
Q 001349 853 EHTKAVTGLAILQ--SGEMLYSG-SLDKTARVWSIGNEEIHCVQVHD-IKDQIQNLAVSNSILCFIPQGAGIKVHLRNGK 928 (1094)
Q Consensus 853 ~H~~~V~sv~fsp--dg~~LaSg-s~DgtI~vWdi~~~~~~~~~~~~-~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~ 928 (1094)
...+.+..+..-+ +...+..| +...||+++|.+.++..+..... ...
T Consensus 824 pk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~----------------------------- 874 (1034)
T KOG4190|consen 824 PKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPG----------------------------- 874 (1034)
T ss_pred cccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCC-----------------------------
Confidence 2223344444434 44445444 77899999999987643322211 000
Q ss_pred EEEEcCCCCceEEEEe--CCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEE
Q 001349 929 TKLLNSSKYPKCLALV--QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAV 1006 (1094)
Q Consensus 929 i~l~~~~~~v~~l~~s--~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I 1006 (1094)
++..++++++. ++++++|-.+|.|.+.|.++|+.+.. +.........++ .|....++....|. ++
T Consensus 875 -----Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINs------wrpmecdllqla-apsdq~L~~saldH-sl 941 (1034)
T KOG4190|consen 875 -----PNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINS------WRPMECDLLQLA-APSDQALAQSALDH-SL 941 (1034)
T ss_pred -----CchheeEEEeccCcchhhHHhcCCcEEEEecCCCceecc------CCcccchhhhhc-CchhHHHHhhcccc-ee
Confidence 11223444443 34688888999999999999997732 222222222222 24455666666664 77
Q ss_pred EE-EECCCCeEEEEecC-CCCEEEEEEeCCEEEEEEcCCeEEEEECC-CC---cEEEEec-ccCCcceEEEEEcCCCCEE
Q 001349 1007 KM-WSTSNYNMVGSLPT-LSEVRAMVVSSELVYLGCKGGTVEIWDQK-RQ---IRIETLQ-TGTSGKVQCMALDDNEEFL 1079 (1094)
Q Consensus 1007 ~i-wd~~~~~~~~~~~~-~~~v~~l~~spd~l~sgs~dg~I~vwd~~-t~---~~~~~l~-~~h~~~I~~l~~Spdg~~L 1079 (1094)
.+ |..-++....+.+. ..+..-+.--+--++++...+.+.||--. .. ..+..+. ....+..++++.-|-+..+
T Consensus 942 aVnWhaldgimh~q~kpppepahflqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~af 1021 (1034)
T KOG4190|consen 942 AVNWHALDGIMHLQDKPPPEPAHFLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAF 1021 (1034)
T ss_pred EeeehhcCCeeeeccCCCCcchhhhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchh
Confidence 77 87766655444432 12111111112246666677778888421 11 1111221 1234578888888888888
Q ss_pred EEEeCCCcEEE
Q 001349 1080 VIGTSDGRIQA 1090 (1094)
Q Consensus 1080 ~sgs~DG~I~i 1090 (1094)
..|+..|.|.+
T Consensus 1022 LaGne~G~IaL 1032 (1034)
T KOG4190|consen 1022 LAGNEHGAIAL 1032 (1034)
T ss_pred hccCCCCceee
Confidence 89999998875
No 290
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=4.4e-07 Score=97.53 Aligned_cols=260 Identities=17% Similarity=0.225 Sum_probs=174.0
Q ss_pred hccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcChHH----HHHHHHhcCCChHHHHHhh-----h
Q 001349 322 LFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKGLLE----AVVLIDLLRPSTRTLIEMD-----M 392 (1094)
Q Consensus 322 L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g~~~----Aa~~l~~L~~~~~~~~~~~-----~ 392 (1094)
|..+.+..+|+++.-+|++|. ..+++++.++ ..|.+|.||.+||+|..+ +.-+|-++.....+..-+. .
T Consensus 175 LakskdirvqrnatgaLlnmT-hs~EnRr~LV-~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~l 252 (550)
T KOG4224|consen 175 LAKSKDIRVQRNATGALLNMT-HSRENRRVLV-HAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKL 252 (550)
T ss_pred hcccchhhHHHHHHHHHHHhh-hhhhhhhhhh-ccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccch
Confidence 777999999999999999994 4445677777 567999999999999443 4447888877776655444 3
Q ss_pred hHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHH-HHH
Q 001349 393 MESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGI-LLR 471 (1094)
Q Consensus 393 ~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-l~~ 471 (1094)
+|.||.+...++.+ . |.-|-..|..| +...+--..|+..|++|.+++.++. .-....+++. -.+
T Consensus 253 v~~Lv~Lmd~~s~k-v------kcqA~lALrnl------asdt~Yq~eiv~ag~lP~lv~Llqs--~~~plilasVaCIr 317 (550)
T KOG4224|consen 253 VPALVDLMDDGSDK-V------KCQAGLALRNL------ASDTEYQREIVEAGSLPLLVELLQS--PMGPLILASVACIR 317 (550)
T ss_pred HHHHHHHHhCCChH-H------HHHHHHHHhhh------cccchhhhHHHhcCCchHHHHHHhC--cchhHHHHHHHHHh
Confidence 38999998887532 1 22222334444 5556777889999999999999963 3333333331 112
Q ss_pred HhhccCcchhhHhhhcCchhHHHHHHhcCCc-hhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcC
Q 001349 472 CMQEDGKCRNSIADKAELAPVMESFMAASDG-ERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTAN 550 (1094)
Q Consensus 472 ~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~ 550 (1094)
.+.--.-.-..|++.+=+.|||.||+.+... .+++|+..|-.|-...|++ .+.|.+.|.+.- +...+..+|
T Consensus 318 nisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n-----~~~i~esgAi~k---l~eL~lD~p 389 (550)
T KOG4224|consen 318 NISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHN-----VSVIRESGAIPK---LIELLLDGP 389 (550)
T ss_pred hcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhh-----hHHHhhcCchHH---HHHHHhcCC
Confidence 2333344445788999999999999987655 7999999999986644332 345566666665 667777777
Q ss_pred CccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhcc
Q 001349 551 HDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQ 608 (1094)
Q Consensus 551 ~~~~~~~a~~l~~l~~~~~~~~~~~~reea~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 608 (1094)
-+-|.-+..-+.||.+-++.+.. ..--+-++.||. +..+....+|--||.||.||.
T Consensus 390 vsvqseisac~a~Lal~d~~k~~-lld~gi~~iLIp-~t~s~s~Ev~gNaAaAL~Nls 445 (550)
T KOG4224|consen 390 VSVQSEISACIAQLALNDNDKEA-LLDSGIIPILIP-WTGSESEEVRGNAAAALINLS 445 (550)
T ss_pred hhHHHHHHHHHHHHHhccccHHH-HhhcCCcceeec-ccCccchhhcccHHHHHHhhh
Confidence 77777777778888874333221 111112233333 233334457778899998865
No 291
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.64 E-value=1.4e-08 Score=78.59 Aligned_cols=40 Identities=43% Similarity=0.963 Sum_probs=34.2
Q ss_pred eccCcccccc---CcEEcCCcccccHHhHHHHHHhCCCCCCCCC
Q 001349 165 VCPITTHIFD---DPVTLETGQTYERRAIQEWIERGNSSCPITR 205 (1094)
Q Consensus 165 ~CpIc~~~~~---dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~ 205 (1094)
.||||++-|. .++.++|||.||..||.+|+.. +..||.||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 4999999994 4566899999999999999998 56899996
No 292
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.61 E-value=2.6e-05 Score=86.58 Aligned_cols=150 Identities=13% Similarity=0.157 Sum_probs=109.7
Q ss_pred cCcEEEEeeCCCCeEEEeCCcceeecccCCCcEEEEEEeCC--EEEEEECCC-eEEEEecCCCcceeEEEecccCCCeEE
Q 001349 784 EMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD--KIFSGHSDG-TIKVWTGRGSILHLIQQIREHTKAVTG 860 (1094)
Q Consensus 784 d~~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg-~I~vWd~~t~~~~~~~~l~~H~~~V~s 860 (1094)
+|.+++..|. |..-|.+......+..+|.+.|.-..+..+ -++.|..|| .+-|+|..++ .+..+.+.-+.|.+
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~---e~kr~e~~lg~I~a 406 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG---EVKRIEKDLGNIEA 406 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCc---eEEEeeCCccceEE
Confidence 4667666654 444454444344455678888887777754 889999999 9999999998 45667778889999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceE
Q 001349 861 LAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKC 940 (1094)
Q Consensus 861 v~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~ 940 (1094)
+..++||++++.+-....+-+.|+++|..+.+... ..+-|..+. |+|++++++-+.-+|
T Consensus 407 v~vs~dGK~~vvaNdr~el~vididngnv~~idkS-~~~lItdf~-------~~~nsr~iAYafP~g------------- 465 (668)
T COG4946 407 VKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKS-EYGLITDFD-------WHPNSRWIAYAFPEG------------- 465 (668)
T ss_pred EEEcCCCcEEEEEcCceEEEEEEecCCCeeEeccc-ccceeEEEE-------EcCCceeEEEecCcc-------------
Confidence 99999999999999989999999999975544432 345566666 889999877654433
Q ss_pred EEEeCCEEEEEEcCCeEEEEECCCCceeE
Q 001349 941 LALVQGKVYCGCQDGAIQEIDLATGTFAT 969 (1094)
Q Consensus 941 l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~ 969 (1094)
..-..|++||+.+++...
T Consensus 466 -----------y~tq~Iklydm~~~Kiy~ 483 (668)
T COG4946 466 -----------YYTQSIKLYDMDGGKIYD 483 (668)
T ss_pred -----------eeeeeEEEEecCCCeEEE
Confidence 223467777777766543
No 293
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.60 E-value=3.1e-06 Score=103.15 Aligned_cols=273 Identities=19% Similarity=0.245 Sum_probs=188.9
Q ss_pred CchHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcCh----HHHHHHHHhcCCChHHHHHhhhh---HHHHH
Q 001349 326 VDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKGL----LEAVVLIDLLRPSTRTLIEMDMM---ESLMT 398 (1094)
Q Consensus 326 ~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g~----~~Aa~~l~~L~~~~~~~~~~~~~---~~Ll~ 398 (1094)
..+++.++++.+|+|| +.+..+..++. ..+-++.|+.+|++++ .-+...|..|+-..+|+..|... |+|+.
T Consensus 261 kQeqLlrv~~~lLlNL-Aed~~ve~kM~-~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~k 338 (708)
T PF05804_consen 261 KQEQLLRVAFYLLLNL-AEDPRVELKMV-NKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLK 338 (708)
T ss_pred HHHHHHHHHHHHHHHH-hcChHHHHHHH-hcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHH
Confidence 3578899999999999 55555666665 4568899999999983 34556889999998888777755 99999
Q ss_pred HHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCc
Q 001349 399 VIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGK 478 (1094)
Q Consensus 399 ~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~ 478 (1094)
++.++.++. ...++.+|.+| +.+++++.+|++.|.+|.|++.+..++.+ ..+..+|.++ ..+..
T Consensus 339 Ll~s~~~~l-------~~~aLrlL~NL------Sfd~~~R~~mV~~GlIPkLv~LL~d~~~~--~val~iLy~L-S~dd~ 402 (708)
T PF05804_consen 339 LLPSENEDL-------VNVALRLLFNL------SFDPELRSQMVSLGLIPKLVELLKDPNFR--EVALKILYNL-SMDDE 402 (708)
T ss_pred HhcCCCHHH-------HHHHHHHHHHh------CcCHHHHHHHHHCCCcHHHHHHhCCCchH--HHHHHHHHHh-ccCHh
Confidence 998875442 34566777666 77889999999999999999999866544 4455555544 55778
Q ss_pred chhhHhhhcCchhHHHHHHhc-CCchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhH
Q 001349 479 CRNSIADKAELAPVMESFMAA-SDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVV 557 (1094)
Q Consensus 479 ~r~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~ 557 (1094)
+|.+++....++.+++++-.+ +.+.....+.++..|..-+|- . +.|-+++++.. |+....+ -+-|+.
T Consensus 403 ~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rn---a---qlm~~g~gL~~---L~~ra~~---~~D~lL 470 (708)
T PF05804_consen 403 ARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRN---A---QLMCEGNGLQS---LMKRALK---TRDPLL 470 (708)
T ss_pred hHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHH---H---HHHHhcCcHHH---HHHHHHh---cccHHH
Confidence 999999999999999976665 333455568888888666552 2 34445556544 4444433 334666
Q ss_pred HHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhcccccccCChhhHHHHHHHHhCCCcccccc
Q 001349 558 AGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQGRFTTSGKSLTRAMLLKRAGVGKSYKNL 636 (1094)
Q Consensus 558 a~~l~~l~~~~~~~~~~~~reea~~~~~~~l~~~~~~~~~~~~~~~~~~l~g~~s~~g~~~~~~~l~~~~g~~~~~~~~ 636 (1094)
..++=.+..-..+-+. .| .+.|..|+..+..++.......+-=+|.||.= ++ +.-+-++++.+|-.+...+
T Consensus 471 lKlIRNiS~h~~~~k~-~f-~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~----~~--ld~~~ll~~~~llp~L~~~ 541 (708)
T PF05804_consen 471 LKLIRNISQHDGPLKE-LF-VDFIGDLAKIVSSGDSEEFVVECLGILANLTI----PD--LDWAQLLQEYNLLPWLKDL 541 (708)
T ss_pred HHHHHHHHhcCchHHH-HH-HHHHHHHHHHhhcCCcHHHHHHHHHHHHhccc----CC--cCHHHHHHhCCHHHHHHHH
Confidence 6666555553323333 34 57888899999888866666666666777652 11 1223456777777665443
No 294
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.60 E-value=3.4e-05 Score=84.02 Aligned_cols=223 Identities=14% Similarity=0.185 Sum_probs=140.5
Q ss_pred CCeEEEEecCC--CcceeEEEecccCCCeEEEEEecCCCEEEEEeCC---CcEEEEECCC--CceEEEEecccCc-ccee
Q 001349 832 DGTIKVWTGRG--SILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD---KTARVWSIGN--EEIHCVQVHDIKD-QIQN 903 (1094)
Q Consensus 832 Dg~I~vWd~~t--~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~D---gtI~vWdi~~--~~~~~~~~~~~~~-~V~~ 903 (1094)
+.-|++|++.+ ++...+. +-.+.+.++-++|+|+++.|+++-.+ |.|-.|.++. |.+..+......+ +...
T Consensus 15 s~gI~v~~ld~~~g~l~~~~-~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~y 93 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQ-LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCY 93 (346)
T ss_pred CCceEEEEEeCcccccchhh-hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeE
Confidence 46799998874 3322332 23567788999999999999998664 6677766664 5554444333222 2244
Q ss_pred eeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCC-CceeEEeccceeecCCCC
Q 001349 904 LAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLAT-GTFATIQTGHRKLLGKAN 982 (1094)
Q Consensus 904 v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~-~~~~~~~~~~~~~~~h~~ 982 (1094)
++ ++++|++++++... -|.|.++-++. |..... .....|..
T Consensus 94 vs-------vd~~g~~vf~AnY~---------------------------~g~v~v~p~~~dG~l~~~----v~~~~h~g 135 (346)
T COG2706 94 VS-------VDEDGRFVFVANYH---------------------------SGSVSVYPLQADGSLQPV----VQVVKHTG 135 (346)
T ss_pred EE-------ECCCCCEEEEEEcc---------------------------CceEEEEEcccCCccccc----eeeeecCC
Confidence 44 78888876555443 34555555543 222111 01111222
Q ss_pred ----------CeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEE----ecCCCCEEEEEEeCC--EEEEEE-cCCeE
Q 001349 983 ----------PVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGS----LPTLSEVRAMVVSSE--LVYLGC-KGGTV 1045 (1094)
Q Consensus 983 ----------~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~----~~~~~~v~~l~~spd--~l~sgs-~dg~I 1045 (1094)
-+.+..+.|++.++++....--.|.+|++..|.+... ++.+...+.|.|+|+ +.++.+ -+++|
T Consensus 136 ~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV 215 (346)
T COG2706 136 SGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTV 215 (346)
T ss_pred CCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEE
Confidence 2788899999999888764433899999998765433 235677899999999 555555 48999
Q ss_pred EEEECCCC-cEEEEec------ccC--CcceEEEEEcCCCCEEEEEeC-CCcEEEEeC
Q 001349 1046 EIWDQKRQ-IRIETLQ------TGT--SGKVQCMALDDNEEFLVIGTS-DGRIQAWGL 1093 (1094)
Q Consensus 1046 ~vwd~~t~-~~~~~l~------~~h--~~~I~~l~~Spdg~~L~sgs~-DG~I~iWdl 1093 (1094)
-+|..... ..+..++ ... ......|.+++||++|.++.. ...|-+|.+
T Consensus 216 ~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V 273 (346)
T COG2706 216 DVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSV 273 (346)
T ss_pred EEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEE
Confidence 99988763 2233322 121 236778899999999988754 224555543
No 295
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.58 E-value=3.6e-05 Score=98.34 Aligned_cols=274 Identities=15% Similarity=0.160 Sum_probs=174.8
Q ss_pred CCCcEEEEEEeCC--EEEEEECCCeEEEE----ecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 001349 812 ENGKVLSIACFRD--KIFSGHSDGTIKVW----TGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIG 885 (1094)
Q Consensus 812 h~~~V~~l~fspd--~LaSgs~Dg~I~vW----d~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~ 885 (1094)
..+.|.++.|.++ .++.+..+|.|.+. |..+.....+..+ ...|.+++||||+..|+.++.+|++.+.+-+
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v---d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~ 150 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSV---DSGILAASWSPDEELLALVTGEGNLLLMTRD 150 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEE---cCcEEEEEECCCcCEEEEEeCCCEEEEEecc
Confidence 4578999999986 78999999999999 7666644455444 5789999999999999999999998775421
Q ss_pred C-------------CceEEE---------Eecc--cC-------ccc------ee--eeecCceEEEeeCCCeEEEEEe-
Q 001349 886 N-------------EEIHCV---------QVHD--IK-------DQI------QN--LAVSNSILCFIPQGAGIKVHLR- 925 (1094)
Q Consensus 886 ~-------------~~~~~~---------~~~~--~~-------~~V------~~--v~~~~~~~~fspdg~~l~~~~~- 925 (1094)
- |..+.+ +.++ .+ .+. .. ..-....++|-.||.++++...
T Consensus 151 fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~ 230 (928)
T PF04762_consen 151 FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVE 230 (928)
T ss_pred ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEE
Confidence 1 100000 0000 00 000 00 1112235668899999998876
Q ss_pred --C---CeEEEEcCCCC-----------ceEEEEeC-CE-EEEEEc---CCeEEEEECCCCceeEEeccceeecCCCCCe
Q 001349 926 --N---GKTKLLNSSKY-----------PKCLALVQ-GK-VYCGCQ---DGAIQEIDLATGTFATIQTGHRKLLGKANPV 984 (1094)
Q Consensus 926 --~---g~i~l~~~~~~-----------v~~l~~s~-~~-l~sgs~---Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V 984 (1094)
. ..+++|+..+. -.+++|.| |. |++... ...|.+|. ++|-....|. ..+......|
T Consensus 231 ~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~--l~~~~~~~~v 307 (928)
T PF04762_consen 231 PETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFT--LRFDPEEEKV 307 (928)
T ss_pred cCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEe--cCCCCCCcee
Confidence 2 46788986532 23455654 33 444332 24566666 4444333332 1222345689
Q ss_pred EEEEEeCCccEEEEEECCCCEEEEEECCCCe--EEEEec--CCCCEEEEEEeCC---EEEEEEcCCeEEEEEC----CCC
Q 001349 985 HALQVHNGLVYTASTSLDGAAVKMWSTSNYN--MVGSLP--TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQ----KRQ 1053 (1094)
Q Consensus 985 ~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~--~~~~~~--~~~~v~~l~~spd---~l~sgs~dg~I~vwd~----~t~ 1053 (1094)
..+.|+.++..++..-.| .|.+|-..++. ..+.+. ....+..+.|+|. .+.+.+.+|.+..++. ..+
T Consensus 308 ~~l~Wn~ds~iLAv~~~~--~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s 385 (928)
T PF04762_consen 308 IELAWNSDSEILAVWLED--RVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRS 385 (928)
T ss_pred eEEEECCCCCEEEEEecC--CceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEec
Confidence 999999999999987755 59999998754 333333 3444566999986 5677766666655432 211
Q ss_pred --------cEEEEec----------------------ccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1054 --------IRIETLQ----------------------TGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1054 --------~~~~~l~----------------------~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
..+..+. -.-...|.+++|++++..+++-..||+|.+|..
T Consensus 386 ~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~ 455 (928)
T PF04762_consen 386 PGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEW 455 (928)
T ss_pred CCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEe
Confidence 0111110 012457999999999988999999999999874
No 296
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=3e-08 Score=113.70 Aligned_cols=79 Identities=29% Similarity=0.508 Sum_probs=64.2
Q ss_pred CCCceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHHHHhCCCC-----
Q 001349 160 PPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPGG----- 234 (1094)
Q Consensus 160 ~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~~~~~~~----- 234 (1094)
..+++.||||++.|.+|++++|||+||+.||..++. ....||.|+. ... .+. +|..+.++++.++......
T Consensus 10 ~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~~-~~~-~n~~l~~~~~~~~~~~~~~~~~~~ 85 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-PSR-NLR-PNVLLANLVERLRQLRLSRPLGSK 85 (386)
T ss_pred ccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-chh-ccC-ccHHHHHHHHHHHhcCCccccccc
Confidence 345899999999999999999999999999999888 4567999996 333 675 9999999999998765432
Q ss_pred --CCCCCCCC
Q 001349 235 --LDLSHSEP 242 (1094)
Q Consensus 235 --~~~~~~~~ 242 (1094)
.|..|.+.
T Consensus 86 ~~~c~~~~~~ 95 (386)
T KOG2177|consen 86 EELCEKHGEE 95 (386)
T ss_pred chhhhhcCCc
Confidence 45555553
No 297
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.56 E-value=4.8e-07 Score=94.89 Aligned_cols=106 Identities=18% Similarity=0.209 Sum_probs=85.9
Q ss_pred ccccCcEEEEeeCCCCeEEEeCC----cceeecccCCCcEEEEEEe---CCEEEEEECCCeEEEEecCCCcceeEEE-ec
Q 001349 781 LAFEMVKVLSNGHDSSADFWNHR----ELVHVDSSENGKVLSIACF---RDKIFSGHSDGTIKVWTGRGSILHLIQQ-IR 852 (1094)
Q Consensus 781 ~~~d~~~l~s~s~dg~I~vWd~~----~~~~~~~~h~~~V~~l~fs---pd~LaSgs~Dg~I~vWd~~t~~~~~~~~-l~ 852 (1094)
+...+..++++-.+|.+.+-+.+ +..+..+.|.-+.+-..|+ |+.+++|+.||.+..||++... +.+.. .+
T Consensus 129 ~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-~~i~~n~k 207 (339)
T KOG0280|consen 129 ISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-TFIWHNSK 207 (339)
T ss_pred eeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc-ceeeecce
Confidence 44456778888888998844443 3345788999999999997 4699999999999999999433 44444 66
Q ss_pred ccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCC
Q 001349 853 EHTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNE 887 (1094)
Q Consensus 853 ~H~~~V~sv~fsp-dg~~LaSgs~DgtI~vWdi~~~ 887 (1094)
-|+..|.+|.-+| .+.+++||+.|-.|++||.+.-
T Consensus 208 vH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm 243 (339)
T KOG0280|consen 208 VHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNM 243 (339)
T ss_pred eeecceEEEecCCCCCceEEEeccccceeeeehhcc
Confidence 7999999999887 6889999999999999999863
No 298
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.56 E-value=7.7e-06 Score=92.40 Aligned_cols=288 Identities=10% Similarity=0.084 Sum_probs=167.2
Q ss_pred cccccccCcEEEEeeCCCCeEEEeCCcceeecccCCCcEEEEEEeCC--EEEEEEC-----------CCeEEEEecCCCc
Q 001349 778 YSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD--KIFSGHS-----------DGTIKVWTGRGSI 844 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~fspd--~LaSgs~-----------Dg~I~vWd~~t~~ 844 (1094)
+.-++|-|.|++|--..| |.+|--........-..-.|.-+.|||+ +|+|-+. ...++|||+.+|
T Consensus 215 yv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG- 292 (698)
T KOG2314|consen 215 YVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG- 292 (698)
T ss_pred eEEecCCceEEEEEeccc-eeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcccc-
Confidence 566788899999876665 5689765322222222345888999996 8988763 257899999999
Q ss_pred ceeEEEecc--cCCCeE-EEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecc-cCccceeeeecCceEEEeeCCCeE
Q 001349 845 LHLIQQIRE--HTKAVT-GLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHD-IKDQIQNLAVSNSILCFIPQGAGI 920 (1094)
Q Consensus 845 ~~~~~~l~~--H~~~V~-sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~-~~~~V~~v~~~~~~~~fspdg~~l 920 (1094)
...+.+.. ....++ -..||.|++++|--..| +|.|++...- ..+.... ....|.... |+|.+..+
T Consensus 293 -~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf--~lld~Kslki~gIr~Fs-------wsP~~~ll 361 (698)
T KOG2314|consen 293 -LLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSF--MLLDKKSLKISGIRDFS-------WSPTSNLL 361 (698)
T ss_pred -chhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCce--eeecccccCCccccCcc-------cCCCcceE
Confidence 55555544 233343 36899999999988775 5899987763 2222211 123445555 66666665
Q ss_pred EEEEeCC-----eEEEEc-----------------------CCCCceEEEEeC-CEEEEEEcCCeEEEEECCCCceeEEe
Q 001349 921 KVHLRNG-----KTKLLN-----------------------SSKYPKCLALVQ-GKVYCGCQDGAIQEIDLATGTFATIQ 971 (1094)
Q Consensus 921 ~~~~~~g-----~i~l~~-----------------------~~~~v~~l~~s~-~~l~sgs~Dg~I~iwDl~~~~~~~~~ 971 (1094)
+...... .+.+.. .++.-.|+.... .+.-+++.=..+.|+.++......
T Consensus 362 AYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpv-- 439 (698)
T KOG2314|consen 362 AYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPV-- 439 (698)
T ss_pred EEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCc--
Confidence 5433221 111111 111112221110 000011111234455554433221
Q ss_pred ccceeecCCCCCeEEEEEeCCccEEEEEECC--CCEEEEEECCC----CeEEEEecCCCCEEEEEEeCC--EEEE---EE
Q 001349 972 TGHRKLLGKANPVHALQVHNGLVYTASTSLD--GAAVKMWSTSN----YNMVGSLPTLSEVRAMVVSSE--LVYL---GC 1040 (1094)
Q Consensus 972 ~~~~~~~~h~~~V~sl~fs~~~~~las~s~D--g~~I~iwd~~~----~~~~~~~~~~~~v~~l~~spd--~l~s---gs 1040 (1094)
....-...|..++|.|.|..++..+.+ ..++.+|.+.+ .+.+..+.. ...+.+.|+|. +++. +|
T Consensus 440 ----e~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk-~~~N~vfwsPkG~fvvva~l~s 514 (698)
T KOG2314|consen 440 ----EVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK-KFANTVFWSPKGRFVVVAALVS 514 (698)
T ss_pred ----eeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc-cccceEEEcCCCcEEEEEEecc
Confidence 111234578888998887766655432 24788888773 223333332 55778999998 4444 35
Q ss_pred cCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCC
Q 001349 1041 KGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDG 1086 (1094)
Q Consensus 1041 ~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG 1086 (1094)
..|.+.++|..-.....+-...|. ..+.+-|.|.|+|++|+++-+
T Consensus 515 ~~g~l~F~D~~~a~~k~~~~~eh~-~at~veWDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 515 RRGDLEFYDTDYADLKDTASPEHF-AATEVEWDPTGRYVVTSSSSW 559 (698)
T ss_pred cccceEEEecchhhhhhccCcccc-ccccceECCCCCEEEEeeehh
Confidence 689999999885333222212344 568899999999999998744
No 299
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.55 E-value=5.4e-05 Score=82.08 Aligned_cols=215 Identities=17% Similarity=0.155 Sum_probs=132.8
Q ss_pred CCCeEEEEecCCCcceeEEEecccCCCeEEEE--EecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecC
Q 001349 831 SDGTIKVWTGRGSILHLIQQIREHTKAVTGLA--ILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSN 908 (1094)
Q Consensus 831 ~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~--fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~ 908 (1094)
.+|+|..||..++ +.+....- ........ ..+++..+++++.++.+..||..+|+..-.... ...+...
T Consensus 1 ~~g~l~~~d~~tG--~~~W~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~--~~~~~~~---- 71 (238)
T PF13360_consen 1 DDGTLSALDPRTG--KELWSYDL-GPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL--PGPISGA---- 71 (238)
T ss_dssp -TSEEEEEETTTT--EEEEEEEC-SSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC--SSCGGSG----
T ss_pred CCCEEEEEECCCC--CEEEEEEC-CCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec--cccccce----
Confidence 3789999999999 67776642 11121112 333667788889999999999999863222221 2211111
Q ss_pred ceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEe-ccceeecCCCCCeEEE
Q 001349 909 SILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQ-TGHRKLLGKANPVHAL 987 (1094)
Q Consensus 909 ~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~-~~~~~~~~h~~~V~sl 987 (1094)
....++.+++++.++.+..+|..+|+..... ....... ........
T Consensus 72 --------------------------------~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~-~~~~~~~~ 118 (238)
T PF13360_consen 72 --------------------------------PVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA-GVRSSSSP 118 (238)
T ss_dssp --------------------------------EEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC-STB--SEE
T ss_pred --------------------------------eeecccccccccceeeeEecccCCcceeeeecccccccc-ccccccCc
Confidence 1233456888889999999999999988652 2110000 01112233
Q ss_pred EEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCC-C-----------EEEEEEeCCEEEEEEcCCeEEEEECCCCcE
Q 001349 988 QVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLS-E-----------VRAMVVSSELVYLGCKGGTVEIWDQKRQIR 1055 (1094)
Q Consensus 988 ~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~-~-----------v~~l~~spd~l~sgs~dg~I~vwd~~t~~~ 1055 (1094)
.+. +..++.+..++ .|..+|.++|+.+....... . ...+.+..+.++.++.++.+.-+|..+++.
T Consensus 119 ~~~--~~~~~~~~~~g-~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~ 195 (238)
T PF13360_consen 119 AVD--GDRLYVGTSSG-KLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEK 195 (238)
T ss_dssp EEE--TTEEEEEETCS-EEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTTEE
T ss_pred eEe--cCEEEEEeccC-cEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEECCCCCE
Confidence 333 33444444454 99999999999988876321 1 134445556888888888544449999997
Q ss_pred EEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1056 IETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1056 ~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
+.... ...+..+ ...++..|+.++.+|.|..||+.
T Consensus 196 ~w~~~---~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~ 230 (238)
T PF13360_consen 196 LWSKP---ISGIYSL-PSVDGGTLYVTSSDGRLYALDLK 230 (238)
T ss_dssp EEEEC---SS-ECEC-EECCCTEEEEEETTTEEEEEETT
T ss_pred EEEec---CCCccCC-ceeeCCEEEEEeCCCEEEEEECC
Confidence 65432 2223332 34678888888899999999974
No 300
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.54 E-value=6.1e-07 Score=103.73 Aligned_cols=270 Identities=14% Similarity=0.162 Sum_probs=165.6
Q ss_pred ccccccCcEEEEeeCCCCeEEEeCC---c-ceeecccCCCcEEEEEEeC----CEEEEEECCCeEEEEecCCCcc-eeEE
Q 001349 779 SPLAFEMVKVLSNGHDSSADFWNHR---E-LVHVDSSENGKVLSIACFR----DKIFSGHSDGTIKVWTGRGSIL-HLIQ 849 (1094)
Q Consensus 779 ~~~~~d~~~l~s~s~dg~I~vWd~~---~-~~~~~~~h~~~V~~l~fsp----d~LaSgs~Dg~I~vWd~~t~~~-~~~~ 849 (1094)
..+.+.|+-++.++..|.. +-|.. + .........-.|-.+.|++ ++-++......-.+|++....- ..-.
T Consensus 30 ~si~p~grdi~lAsr~gl~-i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef 108 (1081)
T KOG0309|consen 30 VSINPSGRDIVLASRQGLY-IIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEF 108 (1081)
T ss_pred eeeccccchhhhhhhcCeE-EEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEE
Confidence 3445556667777766644 33443 1 1111111223466777886 3433344444556898764321 3344
Q ss_pred EecccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCe
Q 001349 850 QIREHTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGK 928 (1094)
Q Consensus 850 ~l~~H~~~V~sv~fsp-dg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~ 928 (1094)
.+.+|+..|+.+.|+| ....+++++-|-.|..||+++.. .++++..
T Consensus 109 ~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~----------~p~ys~~----------------------- 155 (1081)
T KOG0309|consen 109 VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH----------RPFYSTS----------------------- 155 (1081)
T ss_pred EEecCccceeccccCCCCCcceeeccccccceeeeccCCC----------cceeeee-----------------------
Confidence 5679999999999999 46789999999999999998853 1222211
Q ss_pred EEEEcCCCCceEEEEe--CCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeC-CccEEEEEECCCCE
Q 001349 929 TKLLNSSKYPKCLALV--QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN-GLVYTASTSLDGAA 1005 (1094)
Q Consensus 929 i~l~~~~~~v~~l~~s--~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~-~~~~las~s~Dg~~ 1005 (1094)
.|+ .....++++ ++.+.+.+..+.|.+||.+.|.... ..+.+|...|+.+.|.. -...+.+.+.|+ +
T Consensus 156 --~w~--s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl-----~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~-t 225 (1081)
T KOG0309|consen 156 --SWR--SAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPL-----CSLKGHVSSVNSIDFNRFKYSEIMSSSNDG-T 225 (1081)
T ss_pred --ccc--ccCceeeecccCcchhhhccCCceEEEeccCCCcce-----EEecccceeeehHHHhhhhhhhhcccCCCC-c
Confidence 000 011122222 3446667778889999999887543 45567888899999863 334556677776 9
Q ss_pred EEEEECCCCe--EEEEecCCCCEEEEEEeCC--EEEE--EEcCCeEE---------EEECCC-CcEEEEecccCCcceEE
Q 001349 1006 VKMWSTSNYN--MVGSLPTLSEVRAMVVSSE--LVYL--GCKGGTVE---------IWDQKR-QIRIETLQTGTSGKVQC 1069 (1094)
Q Consensus 1006 I~iwd~~~~~--~~~~~~~~~~v~~l~~spd--~l~s--gs~dg~I~---------vwd~~t-~~~~~~l~~~h~~~I~~ 1069 (1094)
|+.||..... ..++.+...+|+.-.+-|= ..++ --.++.+. .|++.+ .+++++| .||.+.|..
T Consensus 226 vkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F-~GH~D~V~e 304 (1081)
T KOG0309|consen 226 VKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTF-VGHDDVVLE 304 (1081)
T ss_pred eeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeee-cCcchHHHH
Confidence 9999987533 3333444555554444432 1111 11122333 344433 4688999 699999888
Q ss_pred EEEcCCCC----------EEEEEeCCCcEEEEeC
Q 001349 1070 MALDDNEE----------FLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1070 l~~Spdg~----------~L~sgs~DG~I~iWdl 1093 (1094)
..|-..+. .|+|=+.|.++++|-|
T Consensus 305 FlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI 338 (1081)
T KOG0309|consen 305 FLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPI 338 (1081)
T ss_pred HhhhhcccccCCCCccceeEEEeecCCceEeeec
Confidence 88754332 6999999999999976
No 301
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.54 E-value=0.00017 Score=78.66 Aligned_cols=279 Identities=11% Similarity=0.149 Sum_probs=170.4
Q ss_pred CCCeEEEeCCc-----ceeecccCCCcEEEEEEeCC--EEEEEEC---CCeEEEEecCC--CcceeEEEecccCCCeEEE
Q 001349 794 DSSADFWNHRE-----LVHVDSSENGKVLSIACFRD--KIFSGHS---DGTIKVWTGRG--SILHLIQQIREHTKAVTGL 861 (1094)
Q Consensus 794 dg~I~vWd~~~-----~~~~~~~h~~~V~~l~fspd--~LaSgs~---Dg~I~vWd~~t--~~~~~~~~l~~H~~~V~sv 861 (1094)
+.-|.+|++.+ .......+.+.++-++|+|+ .|+++-. +|.|..|.++. |.+..+.....-..+-+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 57799999872 12233456788999999997 6777754 47787776664 6544444433333444789
Q ss_pred EEecCCCEEEEEeC-CCcEEEEECCC-CceE-EEEecccCccc---eeeeecCceEEEeeCCCeEEEEEeC-CeEEEEcC
Q 001349 862 AILQSGEMLYSGSL-DKTARVWSIGN-EEIH-CVQVHDIKDQI---QNLAVSNSILCFIPQGAGIKVHLRN-GKTKLLNS 934 (1094)
Q Consensus 862 ~fspdg~~LaSgs~-DgtI~vWdi~~-~~~~-~~~~~~~~~~V---~~v~~~~~~~~fspdg~~l~~~~~~-g~i~l~~~ 934 (1094)
+++++|++++++.. -|.|.++-++. |.+. .+....+.+.. ..-.-......|.|+++++++.+.. ..+.+|+.
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 99999999999876 47899999865 4422 22222222220 0000001123389999988776544 44555542
Q ss_pred ---------------CCCceEEEEeCCE---EEEEEcCCeEEEEECCCC--ceeEEecc---ceeecCCCCCeEEEEEeC
Q 001349 935 ---------------SKYPKCLALVQGK---VYCGCQDGAIQEIDLATG--TFATIQTG---HRKLLGKANPVHALQVHN 991 (1094)
Q Consensus 935 ---------------~~~v~~l~~s~~~---l~sgs~Dg~I~iwDl~~~--~~~~~~~~---~~~~~~h~~~V~sl~fs~ 991 (1094)
....+-+.|+++. .++.--+++|.+|..... +....... ...+.+ ......+..++
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g-~~~~aaIhis~ 253 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTG-TNWAAAIHISP 253 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCC-CCceeEEEECC
Confidence 4567889998743 345667899999998873 32211110 111222 24566778889
Q ss_pred CccEEEEEECCCCEEEEEECCC--CeE--EEEec-CCCCEEEEEEeCC--EEEEEEc-CCeEEEEEC--CCCcEEEEecc
Q 001349 992 GLVYTASTSLDGAAVKMWSTSN--YNM--VGSLP-TLSEVRAMVVSSE--LVYLGCK-GGTVEIWDQ--KRQIRIETLQT 1061 (1094)
Q Consensus 992 ~~~~las~s~Dg~~I~iwd~~~--~~~--~~~~~-~~~~v~~l~~spd--~l~sgs~-dg~I~vwd~--~t~~~~~~l~~ 1061 (1094)
+|.++..+...-..|.+|.+.. +++ +.... +....+.+.++++ +|+++.. +..|.+|.+ .+|++-.....
T Consensus 254 dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~ 333 (346)
T COG2706 254 DGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRY 333 (346)
T ss_pred CCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccc
Confidence 9999988865545888888763 332 12222 3445778888876 6666654 456888754 56655444333
Q ss_pred cCCcceEEEEEc
Q 001349 1062 GTSGKVQCMALD 1073 (1094)
Q Consensus 1062 ~h~~~I~~l~~S 1073 (1094)
.......|+.|.
T Consensus 334 ~~~p~Pvcv~f~ 345 (346)
T COG2706 334 AVVPEPVCVKFL 345 (346)
T ss_pred cCCCCcEEEEEc
Confidence 344456677664
No 302
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.52 E-value=0.0003 Score=78.40 Aligned_cols=209 Identities=9% Similarity=0.080 Sum_probs=136.8
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCceEEEEec-ccC----c-----ccee---ee-ecCceEEEeeCCCeEEEEEeCCeE
Q 001349 864 LQSGEMLYSGSLDKTARVWSIGNEEIHCVQVH-DIK----D-----QIQN---LA-VSNSILCFIPQGAGIKVHLRNGKT 929 (1094)
Q Consensus 864 spdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~-~~~----~-----~V~~---v~-~~~~~~~fspdg~~l~~~~~~g~i 929 (1094)
+.||+.++- +.-|.|.++|..+..+..+... +.. . +..- .+ ..++.+++..-|+-++...|+|..
T Consensus 275 nsDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~~ 353 (668)
T COG4946 275 NSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGYS 353 (668)
T ss_pred CCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCCee
Confidence 346776653 3346799999988765554433 111 0 0000 00 122334455555555555556655
Q ss_pred EEEcCCCCceEEEEe--CCEEEEEEcCC-eEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEE
Q 001349 930 KLLNSSKYPKCLALV--QGKVYCGCQDG-AIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAV 1006 (1094)
Q Consensus 930 ~l~~~~~~v~~l~~s--~~~l~sgs~Dg-~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I 1006 (1094)
.-..+...|+-..+. +..++.|..|| .+-+||..+++.. .+...-+.|.++..++++.+++.+.... .+
T Consensus 354 iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-------r~e~~lg~I~av~vs~dGK~~vvaNdr~-el 425 (668)
T COG4946 354 IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-------RIEKDLGNIEAVKVSPDGKKVVVANDRF-EL 425 (668)
T ss_pred EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-------EeeCCccceEEEEEcCCCcEEEEEcCce-EE
Confidence 555556666655554 45799999999 8999999998864 3444557899999999999988876543 78
Q ss_pred EEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcC----CeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEE
Q 001349 1007 KMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKG----GTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFL 1079 (1094)
Q Consensus 1007 ~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~d----g~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L 1079 (1094)
.+.|+.++.....-+ ..+-|+.+.|+|+ +++-+--+ ..|+++|+.+++....-. ..+.=.+-+|.|||++|
T Consensus 426 ~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT--~ta~DfsPaFD~d~ryL 503 (668)
T COG4946 426 WVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT--PTAYDFSPAFDPDGRYL 503 (668)
T ss_pred EEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC--CcccccCcccCCCCcEE
Confidence 888999887654333 4567999999999 66665444 479999999988655432 11222456788999987
Q ss_pred EEEe
Q 001349 1080 VIGT 1083 (1094)
Q Consensus 1080 ~sgs 1083 (1094)
.--+
T Consensus 504 YfLs 507 (668)
T COG4946 504 YFLS 507 (668)
T ss_pred EEEe
Confidence 6543
No 303
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.52 E-value=8.3e-08 Score=74.50 Aligned_cols=44 Identities=34% Similarity=0.873 Sum_probs=38.7
Q ss_pred eccCccccccCcEEcC-CcccccHHhHHHHHHhCCCCCCCCCcCC
Q 001349 165 VCPITTHIFDDPVTLE-TGQTYERRAIQEWIERGNSSCPITRQKL 208 (1094)
Q Consensus 165 ~CpIc~~~~~dPv~~~-cGhtfc~~ci~~~~~~~~~~CP~c~~~~ 208 (1094)
.|+||.+.+.+|+.+. |||.||..|+..|+..+...||.|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4999999998888775 9999999999999998666799998753
No 304
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.51 E-value=7.9e-05 Score=80.81 Aligned_cols=225 Identities=14% Similarity=0.153 Sum_probs=131.2
Q ss_pred CCCeEEEeCCcceeeccc----CCCcEEEEEE-eCCEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCC
Q 001349 794 DSSADFWNHRELVHVDSS----ENGKVLSIAC-FRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGE 868 (1094)
Q Consensus 794 dg~I~vWd~~~~~~~~~~----h~~~V~~l~f-spd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~ 868 (1094)
+|+|..||..+....... ..+...+... ..+.+++++.++.+..||..+| +.+..+.. .+.+.... ..++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG--~~~W~~~~-~~~~~~~~-~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTG--KVLWRFDL-PGPISGAP-VVDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTS--EEEEEEEC-SSCGGSGE-EEETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCC--CEEEEeec-ccccccee-eeccc
Confidence 566777776532222111 1223332233 5568888899999999999999 66666553 22221111 22456
Q ss_pred EEEEEeCCCcEEEEECCCCceEEE-EecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCE
Q 001349 869 MLYSGSLDKTARVWSIGNEEIHCV-QVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGK 947 (1094)
Q Consensus 869 ~LaSgs~DgtI~vWdi~~~~~~~~-~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~ 947 (1094)
.++.++.|+.++.+|..+|+.... ..... +...+. ......+.++.
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~--~~~~~~-------------------------------~~~~~~~~~~~ 124 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSS--PPAGVR-------------------------------SSSSPAVDGDR 124 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SS--CTCSTB---------------------------------SEEEEETTE
T ss_pred ccccccceeeeEecccCCcceeeeeccccc--cccccc-------------------------------cccCceEecCE
Confidence 677777888999999999874332 11110 000000 01112233456
Q ss_pred EEEEEcCCeEEEEECCCCceeEEeccceeec-C---CCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCC
Q 001349 948 VYCGCQDGAIQEIDLATGTFATIQTGHRKLL-G---KANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTL 1023 (1094)
Q Consensus 948 l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~-~---h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~ 1023 (1094)
++++..++.|..+|+.+|+.+.......... . ....+..-....++ .+..++.++..+.+ |..+++.+.... .
T Consensus 125 ~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-~ 201 (238)
T PF13360_consen 125 LYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-I 201 (238)
T ss_dssp EEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-S
T ss_pred EEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-C
Confidence 8888889999999999999875543211000 0 00111222222334 44444455545666 999999776444 3
Q ss_pred CCEEE-EEEeCCEEEEEEcCCeEEEEECCCCcEEEE
Q 001349 1024 SEVRA-MVVSSELVYLGCKGGTVEIWDQKRQIRIET 1058 (1094)
Q Consensus 1024 ~~v~~-l~~spd~l~sgs~dg~I~vwd~~t~~~~~~ 1058 (1094)
..+.. +..+.+.+++++.++.|..||+.+|+.+..
T Consensus 202 ~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 202 SGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp S-ECECEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred CCccCCceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 33444 555666888888999999999999987653
No 305
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=4.7e-05 Score=86.78 Aligned_cols=261 Identities=11% Similarity=0.111 Sum_probs=160.9
Q ss_pred CcEEEEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEE-----eCC-----CcEEEE
Q 001349 814 GKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSG-----SLD-----KTARVW 882 (1094)
Q Consensus 814 ~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSg-----s~D-----gtI~vW 882 (1094)
.++...+++++ .++.-+.++.++|++..++. .+.+...- .+.++.|+|-|.+|.|= ..| -.+++|
T Consensus 35 ~~~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~--~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~ 110 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYSDNQVVKVFEIATLK--VVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY 110 (566)
T ss_pred CcceeEEEcCCCcEEEEEcCCeEEEEEccCCc--EEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeee
Confidence 34667788887 88888889999999998883 44443322 78999999999988652 223 346799
Q ss_pred ECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC-----------CCCceEEEEeCC----E
Q 001349 883 SIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS-----------SKYPKCLALVQG----K 947 (1094)
Q Consensus 883 di~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~-----------~~~v~~l~~s~~----~ 947 (1094)
++.++............. +... |+.|.... ...-.+.+.+++. ...+..+.++++ .
T Consensus 111 ~vet~~~~s~~q~k~Q~~-W~~q-------fs~dEsl~-arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~ 181 (566)
T KOG2315|consen 111 NVETGVQRSQIQKKMQNG-WVPQ-------FSIDESLA-ARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPF 181 (566)
T ss_pred eeccceehhheehhhhcC-cccc-------cccchhhh-hhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCce
Confidence 999853222221111111 2333 55554322 2222334444442 345667777765 2
Q ss_pred EEE-----EEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCc--c-EEEEEECCC--------CEEEEEEC
Q 001349 948 VYC-----GCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGL--V-YTASTSLDG--------AAVKMWST 1011 (1094)
Q Consensus 948 l~s-----gs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~--~-~las~s~Dg--------~~I~iwd~ 1011 (1094)
+++ ++.-+.|++|............. +.|.- ..-..+.|++.+ . .+++...|. .++++.++
T Consensus 182 vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~-ksFFk--adkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t 258 (566)
T KOG2315|consen 182 VAVYVPEKKGAPASVRIYKYPEEGQHQPVAN-KSFFK--ADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLAT 258 (566)
T ss_pred EEEEccCCCCCCcEEEEeccccccccchhhh-ccccc--cceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEe
Confidence 332 45556799998763222111100 11110 112234454322 2 222222221 37899998
Q ss_pred CCCeEEEEecCCCCEEEEEEeCC----EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCC--
Q 001349 1012 SNYNMVGSLPTLSEVRAMVVSSE----LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSD-- 1085 (1094)
Q Consensus 1012 ~~~~~~~~~~~~~~v~~l~~spd----~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~D-- 1085 (1094)
....+.-.+...++|.++.|+++ .++-|-.-..+.|||++ +.++..+. .++=+++-|+|.|++|+.+|.+
T Consensus 259 ~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~---egpRN~~~fnp~g~ii~lAGFGNL 334 (566)
T KOG2315|consen 259 QGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP---EGPRNTAFFNPHGNIILLAGFGNL 334 (566)
T ss_pred cCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC---CCCccceEECCCCCEEEEeecCCC
Confidence 86677777788999999999998 35556677899999986 56777774 4456788899999999988764
Q ss_pred -CcEEEEeCC
Q 001349 1086 -GRIQAWGLS 1094 (1094)
Q Consensus 1086 -G~I~iWdls 1094 (1094)
|.+-|||+.
T Consensus 335 ~G~mEvwDv~ 344 (566)
T KOG2315|consen 335 PGDMEVWDVP 344 (566)
T ss_pred CCceEEEecc
Confidence 789999973
No 306
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.48 E-value=1.8e-06 Score=94.51 Aligned_cols=163 Identities=13% Similarity=0.187 Sum_probs=112.1
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEECCCCc--eEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC
Q 001349 857 AVTGLAILQSGEMLYSGSLDKTARVWSIGNEE--IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS 934 (1094)
Q Consensus 857 ~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~--~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~ 934 (1094)
..+.+..+++++++|.+..++...+++..... .+..... ++.-.+..+.|..+...+.+..
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-------~v~~~~~ai~~~~~~~sv~v~d---------- 126 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-------CVPKRPTAISFIREDTSVLVAD---------- 126 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe-------ecccCcceeeeeeccceEEEEe----------
Confidence 34556677888888888888887777776643 1122211 1111112222433333322211
Q ss_pred CCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCC
Q 001349 935 SKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNY 1014 (1094)
Q Consensus 935 ~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~ 1014 (1094)
..+....+.+|....+.. ....||-.-++.++++||..+++++..|+ .|++-....-
T Consensus 127 ---------------kagD~~~~di~s~~~~~~-------~~~lGhvSml~dVavS~D~~~IitaDRDE-kIRvs~ypa~ 183 (390)
T KOG3914|consen 127 ---------------KAGDVYSFDILSADSGRC-------EPILGHVSMLLDVAVSPDDQFIITADRDE-KIRVSRYPAT 183 (390)
T ss_pred ---------------ecCCceeeeeecccccCc-------chhhhhhhhhheeeecCCCCEEEEecCCc-eEEEEecCcc
Confidence 123344556666554443 45678999999999999999999999997 8998887766
Q ss_pred eEEEEec--CCCCEEEEEEeCC-EEEEEEcCCeEEEEECCCCcEEEEe
Q 001349 1015 NMVGSLP--TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETL 1059 (1094)
Q Consensus 1015 ~~~~~~~--~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~~~~~l 1059 (1094)
..+.+|- |...|..+++-++ .+++||.|++|++||+.+|+.+.++
T Consensus 184 f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 184 FVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred cchhhhccccHhheeeeeeccCceeeecCCCCcEEEEecccCCccccc
Confidence 6666665 7788999999998 6799999999999999999988766
No 307
>PHA02926 zinc finger-like protein; Provisional
Probab=98.45 E-value=9.7e-08 Score=96.27 Aligned_cols=48 Identities=19% Similarity=0.393 Sum_probs=39.5
Q ss_pred CceeccCccccccC---------cEEcCCcccccHHhHHHHHHhC-----CCCCCCCCcCCC
Q 001349 162 KDFVCPITTHIFDD---------PVTLETGQTYERRAIQEWIERG-----NSSCPITRQKLS 209 (1094)
Q Consensus 162 ~~~~CpIc~~~~~d---------Pv~~~cGhtfc~~ci~~~~~~~-----~~~CP~c~~~~~ 209 (1094)
++..|+||++...+ +++.+|+|+||..||..|.+.. ...||.||..+.
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 37899999998744 4667999999999999999853 235999999875
No 308
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=2.2e-05 Score=84.74 Aligned_cols=266 Identities=17% Similarity=0.160 Sum_probs=179.7
Q ss_pred HHhhhccccchHhHHHHHHHHHHHHHhccchHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccchhhhh
Q 001349 273 ITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTL 352 (1094)
Q Consensus 273 i~~L~~s~~l~~~e~a~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i 352 (1094)
+.+|-.++....+..+...+..++...+.-+...+++..|.+++ +..|.+..+|...-+.+.++ .-++.+++++
T Consensus 172 ltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVs-----ll~s~d~dvqyycttaisnI-aVd~~~Rk~L 245 (550)
T KOG4224|consen 172 LTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVS-----LLKSGDLDVQYYCTTAISNI-AVDRRARKIL 245 (550)
T ss_pred hHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhh-----hhccCChhHHHHHHHHhhhh-hhhHHHHHHH
Confidence 34466665555556665555555543333255555566655443 45588999999999999999 5555578888
Q ss_pred ccCCCcH-HHHHHHHhcC----hHHHHHHHHhcCCChHHHHHhh---hhHHHHHHHHhccccccccccCchhhHHHHHHH
Q 001349 353 TRVESDV-ERIVALFKKG----LLEAVVLIDLLRPSTRTLIEMD---MMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQ 424 (1094)
Q Consensus 353 ~~~~~~~-~~L~~lLk~g----~~~Aa~~l~~L~~~~~~~~~~~---~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~ 424 (1094)
...+|.+ +.|+.+...| +..|.-+|.+|+...+-+..|- .+|.||++|++..-.. -.|+++-+-+
T Consensus 246 aqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~pl-------ilasVaCIrn 318 (550)
T KOG4224|consen 246 AQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPL-------ILASVACIRN 318 (550)
T ss_pred HhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhH-------HHHHHHHHhh
Confidence 8888766 9999999988 5677779999988776555544 4499999997643110 1233333332
Q ss_pred HhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhc-cCcchhhHhhhcCchhHHHHHHhcCCch
Q 001349 425 MIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQE-DGKCRNSIADKAELAPVMESFMAASDGE 503 (1094)
Q Consensus 425 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~-~~~~r~~~~~~~~~~~~~~l~~~~~~~~ 503 (1094)
+ +..+-|..-|+..|.+.+||..|+.|+-||-..+|.-.|..+++ ....++.+-..++++.+.+|+..+.-..
T Consensus 319 i------sihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsv 392 (550)
T KOG4224|consen 319 I------SIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSV 392 (550)
T ss_pred c------ccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhH
Confidence 2 56678999999999999999999999999744444444555555 6778888999999999999998876655
Q ss_pred hHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhhhc
Q 001349 504 RFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDL 566 (1094)
Q Consensus 504 ~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~ 566 (1094)
+...-..+.-|. + +......+-+-|.+++ |...+-+-..|-+-=+|..|..|--
T Consensus 393 qseisac~a~La-l-----~d~~k~~lld~gi~~i---LIp~t~s~s~Ev~gNaAaAL~Nlss 446 (550)
T KOG4224|consen 393 QSEISACIAQLA-L-----NDNDKEALLDSGIIPI---LIPWTGSESEEVRGNAAAALINLSS 446 (550)
T ss_pred HHHHHHHHHHHH-h-----ccccHHHHhhcCCcce---eecccCccchhhcccHHHHHHhhhh
Confidence 554333333221 2 2223333445565555 7777766677777777777777765
No 309
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.43 E-value=3e-05 Score=80.58 Aligned_cols=228 Identities=9% Similarity=0.026 Sum_probs=142.5
Q ss_pred EEEEEeC-------CEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCc
Q 001349 817 LSIACFR-------DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS-GEMLYSGSLDKTARVWSIGNEE 888 (1094)
Q Consensus 817 ~~l~fsp-------d~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspd-g~~LaSgs~DgtI~vWdi~~~~ 888 (1094)
..+.|.| ++|+.|+..|...+|...+.. ...+....|...|+-+.=.-| ..-+..++.|.++++.++..+.
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~-~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s 149 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTND-GHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDS 149 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcc-cceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCc
Confidence 3455655 399999999999999998763 233444445554432221112 2346678889999999988764
Q ss_pred eEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCcee
Q 001349 889 IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFA 968 (1094)
Q Consensus 889 ~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~ 968 (1094)
.+...... .-.+.+++ +++|++++ ++.+....|..|.+......
T Consensus 150 ~~~~~h~~-~~~~ns~~-------~snd~~~~----------------------------~~Vgds~~Vf~y~id~~sey 193 (344)
T KOG4532|consen 150 NKFAVHNQ-NLTQNSLH-------YSNDPSWG----------------------------SSVGDSRRVFRYAIDDESEY 193 (344)
T ss_pred ccceeecc-ccceeeeE-------EcCCCceE----------------------------EEecCCCcceEEEeCCccce
Confidence 22211111 11133333 77888764 44445556666666543322
Q ss_pred EEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEE-EEe----c-CCCCEEEEEEeCC----EEEE
Q 001349 969 TIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMV-GSL----P-TLSEVRAMVVSSE----LVYL 1038 (1094)
Q Consensus 969 ~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~-~~~----~-~~~~v~~l~~spd----~l~s 1038 (1094)
... ......++.-.+..|+.....+|++..|| ++.|||++..... ... + |.+.+..+.|++. +++.
T Consensus 194 ~~~---~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg-~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~ 269 (344)
T KOG4532|consen 194 IEN---IYEAPTSDHGFYNSFSENDLQFAVVFQDG-TCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFI 269 (344)
T ss_pred eee---eEecccCCCceeeeeccCcceEEEEecCC-cEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEE
Confidence 110 01122233445778888888999999997 9999999864332 222 1 6788999999964 6666
Q ss_pred EEcCCeEEEEECCCCcEEEEecc------cCC-cceEEEEEcCCCCEEEEEeCC
Q 001349 1039 GCKGGTVEIWDQKRQIRIETLQT------GTS-GKVQCMALDDNEEFLVIGTSD 1085 (1094)
Q Consensus 1039 gs~dg~I~vwd~~t~~~~~~l~~------~h~-~~I~~l~~Spdg~~L~sgs~D 1085 (1094)
.-.-+.+.|.|++++...+.+.. .|. ..|..-.|+.++..+.+.+.+
T Consensus 270 sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~ 323 (344)
T KOG4532|consen 270 SEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL 323 (344)
T ss_pred ecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccch
Confidence 66678999999999876554421 122 248888888888777666654
No 310
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.43 E-value=2.6e-06 Score=89.67 Aligned_cols=238 Identities=12% Similarity=0.252 Sum_probs=142.6
Q ss_pred CCCcEEEEEEeC--CEEEEEECCCeEEEEecCCCc---ceeEEEecccCC------------CeEEEEEecCC--CEEEE
Q 001349 812 ENGKVLSIACFR--DKIFSGHSDGTIKVWTGRGSI---LHLIQQIREHTK------------AVTGLAILQSG--EMLYS 872 (1094)
Q Consensus 812 h~~~V~~l~fsp--d~LaSgs~Dg~I~vWd~~t~~---~~~~~~l~~H~~------------~V~sv~fspdg--~~LaS 872 (1094)
....|+++-|.. +++++|...|.|.++.-.... .+....+++|.. .|..+.|..++ ..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 456789999976 499999999999999765432 344556777753 47788887653 35666
Q ss_pred EeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEe-CCEEEEE
Q 001349 873 GSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALV-QGKVYCG 951 (1094)
Q Consensus 873 gs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s-~~~l~sg 951 (1094)
.+.|++|++|.+....++.+........+. +|-|.-+.+ ...+.+ -..+ .+.++++
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~-----------~~~~g~~~s---~~~l~l---------prls~hd~iiaa 161 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFH-----------SPMGGPLTS---TKELLL---------PRLSEHDEIIAA 161 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccc-----------cccCCCcCC---HHHhhc---------ccccccceEEEe
Confidence 778999999999875443333222211111 111100000 000000 0000 0111111
Q ss_pred EcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCe----EEEEecC-----
Q 001349 952 CQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN----MVGSLPT----- 1022 (1094)
Q Consensus 952 s~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~----~~~~~~~----- 1022 (1094)
. +....-..|..-|+++.|..|...+.++ |+-.|.+|++.-.. .+..-+|
T Consensus 162 ~-------------------p~rvyaNaH~yhiNSiS~NsD~et~lSa--DdLrINLWnl~i~D~sFnIVDiKP~nmeeL 220 (460)
T COG5170 162 K-------------------PCRVYANAHPYHINSISFNSDKETLLSA--DDLRINLWNLEIIDGSFNIVDIKPHNMEEL 220 (460)
T ss_pred c-------------------cceeccccceeEeeeeeecCchheeeec--cceeeeeccccccCCceEEEeccCccHHHH
Confidence 0 0001124577789999999998888876 44589999986422 2221123
Q ss_pred CCCEEEEEEeCC---EEEEEEcCCeEEEEECCCCcEE------EEe---------cccCCcceEEEEEcCCCCEEEEEeC
Q 001349 1023 LSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIRI------ETL---------QTGTSGKVQCMALDDNEEFLVIGTS 1084 (1094)
Q Consensus 1023 ~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~~~~------~~l---------~~~h~~~I~~l~~Spdg~~L~sgs~ 1084 (1094)
..-|++..|+|. .+.-.+..|.|++-|++...+. ... ..+-...|+.+.|+++|+++++-+.
T Consensus 221 teVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy 300 (460)
T COG5170 221 TEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY 300 (460)
T ss_pred HHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc
Confidence 234788889986 5666777899999998743211 110 0122347899999999999998765
Q ss_pred CCcEEEEeCC
Q 001349 1085 DGRIQAWGLS 1094 (1094)
Q Consensus 1085 DG~I~iWdls 1094 (1094)
-+|+|||++
T Consensus 301 -ltvkiwDvn 309 (460)
T COG5170 301 -LTVKIWDVN 309 (460)
T ss_pred -ceEEEEecc
Confidence 489999974
No 311
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=3.6e-08 Score=105.51 Aligned_cols=70 Identities=23% Similarity=0.366 Sum_probs=58.1
Q ss_pred CCCCceeccCccccccCcEEc-CCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHHH
Q 001349 159 TPPKDFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQ 228 (1094)
Q Consensus 159 ~~~~~~~CpIc~~~~~dPv~~-~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~ 228 (1094)
.+..++.||||+++++..+++ .|+|.||+.||-.-+..++..||.||+.+....-.+++.....+|.+.-
T Consensus 39 ~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~ 109 (381)
T KOG0311|consen 39 MFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKIY 109 (381)
T ss_pred HhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHHh
Confidence 345599999999999999987 7999999999999999989899999999865543237777777777654
No 312
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.43 E-value=2e-07 Score=69.80 Aligned_cols=39 Identities=44% Similarity=1.005 Sum_probs=36.0
Q ss_pred ccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCC
Q 001349 166 CPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPIT 204 (1094)
Q Consensus 166 CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c 204 (1094)
|+||++...+|+.++|||.||..|+..|+..+...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999998656679987
No 313
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.42 E-value=8.6e-08 Score=77.63 Aligned_cols=42 Identities=43% Similarity=0.960 Sum_probs=30.3
Q ss_pred ceeccCccccccCcEE-cCCcccccHHhHHHHHHh-CCCCCCCC
Q 001349 163 DFVCPITTHIFDDPVT-LETGQTYERRAIQEWIER-GNSSCPIT 204 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~-~~cGhtfc~~ci~~~~~~-~~~~CP~c 204 (1094)
.+.|||++..|+|||. ..|||+|++.+|.+|+.. +...||+.
T Consensus 11 ~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~ 54 (57)
T PF11789_consen 11 SLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVA 54 (57)
T ss_dssp -SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCC
T ss_pred ccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCC
Confidence 7999999999999998 499999999999999943 23459983
No 314
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.40 E-value=4.1e-06 Score=88.21 Aligned_cols=236 Identities=16% Similarity=0.250 Sum_probs=143.9
Q ss_pred cccccccCcEEEEeeCCCCeEEEeCCc-------ceeecccCC------------CcEEEEEEeCC----EEEEEECCCe
Q 001349 778 YSPLAFEMVKVLSNGHDSSADFWNHRE-------LVHVDSSEN------------GKVLSIACFRD----KIFSGHSDGT 834 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg~I~vWd~~~-------~~~~~~~h~------------~~V~~l~fspd----~LaSgs~Dg~ 834 (1094)
..-+...|.|+++|...|.|.+|.-.. ....+++|. ..|..+.|..+ .+...+.|.+
T Consensus 31 aVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdkt 110 (460)
T COG5170 31 AVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKT 110 (460)
T ss_pred EEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCce
Confidence 334445678999999999999997652 223355663 36888889864 6777789999
Q ss_pred EEEEecCCCcceeE----------------------------------------EEe-cccCCCeEEEEEecCCCEEEEE
Q 001349 835 IKVWTGRGSILHLI----------------------------------------QQI-REHTKAVTGLAILQSGEMLYSG 873 (1094)
Q Consensus 835 I~vWd~~t~~~~~~----------------------------------------~~l-~~H~~~V~sv~fspdg~~LaSg 873 (1094)
|++|.+.....+.+ +.+ ..|.--|+++.|+.|...++++
T Consensus 111 iKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSa 190 (460)
T COG5170 111 IKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSA 190 (460)
T ss_pred eeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeeec
Confidence 99998753311100 111 3466667888888887777665
Q ss_pred eCCCcEEEEECCCC--ceEEEEecccC-----ccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCC
Q 001349 874 SLDKTARVWSIGNE--EIHCVQVHDIK-----DQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQG 946 (1094)
Q Consensus 874 s~DgtI~vWdi~~~--~~~~~~~~~~~-----~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~ 946 (1094)
+|=.|.+|++.-- ....+...++. .-|++.. |+|... +
T Consensus 191 -DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSae-------Fhp~~c---------------------------n 235 (460)
T COG5170 191 -DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAE-------FHPEMC---------------------------N 235 (460)
T ss_pred -cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcc-------cCHhHc---------------------------c
Confidence 4566888886542 12222222111 1122222 333222 2
Q ss_pred EEEEEEcCCeEEEEECCCCceeE----Ee----cc--ceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCC-Ce
Q 001349 947 KVYCGCQDGAIQEIDLATGTFAT----IQ----TG--HRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSN-YN 1015 (1094)
Q Consensus 947 ~l~sgs~Dg~I~iwDl~~~~~~~----~~----~~--~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~-~~ 1015 (1094)
.+.-.+..|.|++-|++....-. .+ .+ ..-+.+-...|..+.|++++.|+++-..- +|+|||++. ..
T Consensus 236 ~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl--tvkiwDvnm~k~ 313 (460)
T COG5170 236 VFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL--TVKIWDVNMAKN 313 (460)
T ss_pred eEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc--eEEEEecccccC
Confidence 35556778899999988433210 00 00 01122334678899999999999987543 899999985 45
Q ss_pred EEEEec-C------------CCCE---EEEEEeCC--EEEEEEcCCeEEEEEC
Q 001349 1016 MVGSLP-T------------LSEV---RAMVVSSE--LVYLGCKGGTVEIWDQ 1050 (1094)
Q Consensus 1016 ~~~~~~-~------------~~~v---~~l~~spd--~l~sgs~dg~I~vwd~ 1050 (1094)
++.+++ | ...| ..+.||+| .+.+|+..+..-+|-+
T Consensus 314 pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 314 PIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred CceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence 677764 2 1222 34677776 7888888777777753
No 315
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.35 E-value=0.00025 Score=83.47 Aligned_cols=256 Identities=13% Similarity=0.103 Sum_probs=144.9
Q ss_pred cCcEEEEeeCCCCeEEEeCCcceeecccC-CCcE-EEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEE-
Q 001349 784 EMVKVLSNGHDSSADFWNHRELVHVDSSE-NGKV-LSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTG- 860 (1094)
Q Consensus 784 d~~~l~s~s~dg~I~vWd~~~~~~~~~~h-~~~V-~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~s- 860 (1094)
++..++.++.+|.+.-+|..+........ .+.+ .+.....+.++.++.+|.+..+|..+| +.+..+......+..
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG--~~~W~~~~~~~~~~~~ 196 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDG--AVKWTVNLDVPSLTLR 196 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCC--CEeeeecCCCCccccc
Confidence 46677788889999989876332222111 1222 222334568888899999999999999 666665432111100
Q ss_pred EEEec--CCCEEEEEeCCCcEEEEECCCCceEEEEecccC---cc---ceeee----ecCc-eEEEeeCCCeEEEEEeCC
Q 001349 861 LAILQ--SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIK---DQ---IQNLA----VSNS-ILCFIPQGAGIKVHLRNG 927 (1094)
Q Consensus 861 v~fsp--dg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~---~~---V~~v~----~~~~-~~~fspdg~~l~~~~~~g 927 (1094)
..-+| .+..++.++.+|.+..+|..+|+..-....... .. ...+. +... ....+.+|...+....+|
T Consensus 197 ~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG 276 (394)
T PRK11138 197 GESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSG 276 (394)
T ss_pred CCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCC
Confidence 00112 234577788889999999988863221111000 00 00000 0111 111233343333333333
Q ss_pred eEEEEcCC-CCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEE
Q 001349 928 KTKLLNSS-KYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAV 1006 (1094)
Q Consensus 928 ~i~l~~~~-~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I 1006 (1094)
.. +|... .....+...++.+++++.+|.+..+|..+|+.+..... . .+ ....+.....+ ++..++.+| .+
T Consensus 277 ~~-~W~~~~~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~---~-~~-~~~~sp~v~~g--~l~v~~~~G-~l 347 (394)
T PRK11138 277 QI-VWKREYGSVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSD---L-LH-RLLTAPVLYNG--YLVVGDSEG-YL 347 (394)
T ss_pred CE-EEeecCCCccCcEEECCEEEEEcCCCeEEEEECCCCcEEEcccc---c-CC-CcccCCEEECC--EEEEEeCCC-EE
Confidence 32 34321 12223456678999999999999999999987643221 0 11 11222223333 334455676 99
Q ss_pred EEEECCCCeEEEEecC-CC-CEEEEEEeCCEEEEEEcCCeEEEEEC
Q 001349 1007 KMWSTSNYNMVGSLPT-LS-EVRAMVVSSELVYLGCKGGTVEIWDQ 1050 (1094)
Q Consensus 1007 ~iwd~~~~~~~~~~~~-~~-~v~~l~~spd~l~sgs~dg~I~vwd~ 1050 (1094)
...|..+|+.+..... .. ......+..+.+++++.||.|+.++.
T Consensus 348 ~~ld~~tG~~~~~~~~~~~~~~s~P~~~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 348 HWINREDGRFVAQQKVDSSGFLSEPVVADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EEEECCCCCEEEEEEcCCCcceeCCEEECCEEEEEeCCceEEEEeC
Confidence 9999999998887763 23 23344556679999999999988764
No 316
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.35 E-value=3e-07 Score=70.90 Aligned_cols=41 Identities=20% Similarity=0.470 Sum_probs=34.7
Q ss_pred eccCccccc---cCcEEcCCcccccHHhHHHHHHhCCCCCCCCCc
Q 001349 165 VCPITTHIF---DDPVTLETGQTYERRAIQEWIERGNSSCPITRQ 206 (1094)
Q Consensus 165 ~CpIc~~~~---~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~ 206 (1094)
.|+||.+.+ ..|++++|||+||..|+.... .....||.|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 399999999 357889999999999999987 33557999985
No 317
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.34 E-value=4.7e-05 Score=79.19 Aligned_cols=194 Identities=13% Similarity=0.023 Sum_probs=124.9
Q ss_pred CcEEEEeeCCCCeEEEeCCc---ceeecccCCCcEEEEE---EeCCEEEEEECCCeEEEEecCCCcceeEEEecccCC--
Q 001349 785 MVKVLSNGHDSSADFWNHRE---LVHVDSSENGKVLSIA---CFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTK-- 856 (1094)
Q Consensus 785 ~~~l~s~s~dg~I~vWd~~~---~~~~~~~h~~~V~~l~---fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~-- 856 (1094)
..+++.||..|...+|...+ ..+....|...|+-+. -+.-.+..++.|.++++.++..+..+.. -|..
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~----~h~~~~ 159 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFA----VHNQNL 159 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccce----eecccc
Confidence 44899999999999999862 2333334554443222 1222677788899999999887622222 2333
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCC
Q 001349 857 AVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSK 936 (1094)
Q Consensus 857 ~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~ 936 (1094)
.+.++++++|++++++.++...|..|.++.......... ..|. ..
T Consensus 160 ~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~-----------------~a~t------------------~D 204 (344)
T KOG4532|consen 160 TQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIY-----------------EAPT------------------SD 204 (344)
T ss_pred ceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeE-----------------eccc------------------CC
Confidence 388999999999999999999999999887532222111 0000 11
Q ss_pred CceEEEEe--CCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCcc---EEEEEECCCCEEEEEEC
Q 001349 937 YPKCLALV--QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLV---YTASTSLDGAAVKMWST 1011 (1094)
Q Consensus 937 ~v~~l~~s--~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~---~las~s~Dg~~I~iwd~ 1011 (1094)
.-.+..|+ +..+++++.||++.+||++.......... .+-..|.+.+..+.|++.+. ++.+- .-+.+.+.|+
T Consensus 205 ~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s-strp~hnGa~R~c~Fsl~g~lDLLf~sE--hfs~~hv~D~ 281 (344)
T KOG4532|consen 205 HGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEIS-STRPHHNGAFRVCRFSLYGLLDLLFISE--HFSRVHVVDT 281 (344)
T ss_pred CceeeeeccCcceEEEEecCCcEEEEEecccccchhhhc-ccCCCCCCceEEEEecCCCcceEEEEec--CcceEEEEEc
Confidence 11222333 23589999999999999997654432221 23345889999999996443 33332 2248999999
Q ss_pred CCCeEEEEe
Q 001349 1012 SNYNMVGSL 1020 (1094)
Q Consensus 1012 ~~~~~~~~~ 1020 (1094)
+++.-.+.+
T Consensus 282 R~~~~~q~I 290 (344)
T KOG4532|consen 282 RNYVNHQVI 290 (344)
T ss_pred ccCceeeEE
Confidence 998765544
No 318
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.34 E-value=0.00016 Score=84.99 Aligned_cols=203 Identities=8% Similarity=-0.067 Sum_probs=120.6
Q ss_pred CeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCE-EEEEeC---CCcEEEEECCCCceEEEEecccCccceeeeecC
Q 001349 833 GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEM-LYSGSL---DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSN 908 (1094)
Q Consensus 833 g~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~-LaSgs~---DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~ 908 (1094)
..|.+=|..... .+.+... +.+..-.|+|||+. ++..+. +..|.++|+.+++.+.+.. ..+......
T Consensus 169 ~~l~~~d~dg~~---~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~--~~g~~~~~~--- 239 (419)
T PRK04043 169 SNIVLADYTLTY---QKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS--SQGMLVVSD--- 239 (419)
T ss_pred ceEEEECCCCCc---eeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec--CCCcEEeeE---
Confidence 355555665542 2223223 37788999999984 654444 3568999999887555443 233333333
Q ss_pred ceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEE
Q 001349 909 SILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQ 988 (1094)
Q Consensus 909 ~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~ 988 (1094)
|+|||+.++..... ..+..|.++|+.++.... +..+........
T Consensus 240 ----~SPDG~~la~~~~~-------------------------~g~~~Iy~~dl~~g~~~~-------LT~~~~~d~~p~ 283 (419)
T PRK04043 240 ----VSKDGSKLLLTMAP-------------------------KGQPDIYLYDTNTKTLTQ-------ITNYPGIDVNGN 283 (419)
T ss_pred ----ECCCCCEEEEEEcc-------------------------CCCcEEEEEECCCCcEEE-------cccCCCccCccE
Confidence 89999876543211 124578888988776532 222222233457
Q ss_pred EeCCccEEEEEECCC--CEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEE-cC--------CeEEEEECCCCcE
Q 001349 989 VHNGLVYTASTSLDG--AAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGC-KG--------GTVEIWDQKRQIR 1055 (1094)
Q Consensus 989 fs~~~~~las~s~Dg--~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs-~d--------g~I~vwd~~t~~~ 1055 (1094)
|+||+..++-.+..+ ..|.++|+.+++..+....... ...|+|| +++..+ .+ ..|.+.|+.++..
T Consensus 284 ~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~ 361 (419)
T PRK04043 284 FVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI 361 (419)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe
Confidence 999997766665332 2688888887766443322222 2489998 444433 22 3788889988864
Q ss_pred EEEecccCCcceEEEEEcCCCCEEEEEeCC
Q 001349 1056 IETLQTGTSGKVQCMALDDNEEFLVIGTSD 1085 (1094)
Q Consensus 1056 ~~~l~~~h~~~I~~l~~Spdg~~L~sgs~D 1085 (1094)
..+..+ +......|+|||+.|+..+.+
T Consensus 362 -~~LT~~--~~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 362 -RRLTAN--GVNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred -EECCCC--CCcCCeEECCCCCEEEEEEcc
Confidence 344222 233468899999987765543
No 319
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.32 E-value=5.6e-07 Score=97.35 Aligned_cols=101 Identities=16% Similarity=0.194 Sum_probs=64.5
Q ss_pred ceeccCcccc-ccCcE----EcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCC----CCChhHHHHHHHHHHHHhCCC
Q 001349 163 DFVCPITTHI-FDDPV----TLETGQTYERRAIQEWIERGNSSCPITRQKLSSTK----LPKTNYVLKRLIASWQEQNPG 233 (1094)
Q Consensus 163 ~~~CpIc~~~-~~dPv----~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~----~~~pN~~l~~~i~~~~~~~~~ 233 (1094)
+..||||..- ...|- +.+|||+||..|+...|..+...||.|+..+.... .+ ++..+.+-|+--+.-...
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F-~D~~vekEV~iRkrv~~i 81 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLF-EDPTVEKEVDIRKRVLKI 81 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhcccccc-ccHHHHHHHHHHHHHHHH
Confidence 6789999983 33442 23799999999999988877778999999988766 44 676666555543321100
Q ss_pred CCCCCCCCCccccccCCCCCCccccchhhhhHHHHHHHHHHhhhcc
Q 001349 234 GLDLSHSEPMSKSIVPSNSPNSVISQATIDGTITELKHAITSLCMS 279 (1094)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~~i~~L~~s 279 (1094)
.. .....|. +-..-+..+++++.+|-.|...
T Consensus 82 ~N-----k~e~dF~----------~l~~yNdYLE~vEdii~nL~~~ 112 (309)
T TIGR00570 82 YN-----KREEDFP----------SLREYNDYLEEVEDIVYNLTNN 112 (309)
T ss_pred Hc-----cchhccC----------CHHHHHHHHHHHHHHHHHhhcC
Confidence 00 0000011 1234556678888888887654
No 320
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=1.5e-05 Score=94.23 Aligned_cols=181 Identities=17% Similarity=0.110 Sum_probs=126.5
Q ss_pred CCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEE
Q 001349 813 NGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCV 892 (1094)
Q Consensus 813 ~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~ 892 (1094)
.+.++|++++...++-|+-+|.|++.+.... . .+...|... ..+|.+++|||.||+|.|-.+.+++. .
T Consensus 39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~~---~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~--~ 106 (846)
T KOG2066|consen 39 NDAISCCAVHDKFFALGTHRGAVYLTTCQGN---P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE--I 106 (846)
T ss_pred hhHHHHHHhhcceeeeccccceEEEEecCCc---c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcc--c
Confidence 5678899999999999999999999998765 2 444456554 55899999999999999999888743 3
Q ss_pred EecccCccceeeeecCceEEEeeC-CCeEEEEEeCCeEEE--------------EcCCCCceEEEEeCCEEEEEEcCCeE
Q 001349 893 QVHDIKDQIQNLAVSNSILCFIPQ-GAGIKVHLRNGKTKL--------------LNSSKYPKCLALVQGKVYCGCQDGAI 957 (1094)
Q Consensus 893 ~~~~~~~~V~~v~~~~~~~~fspd-g~~l~~~~~~g~i~l--------------~~~~~~v~~l~~s~~~l~sgs~Dg~I 957 (1094)
...+...++.++++.|+ |+.. .+.+++++..| +.+ -...+.|.++.|.++.|+-++.+| |
T Consensus 107 ~~~df~rpiksial~Pd---~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~lIAWand~G-v 181 (846)
T KOG2066|consen 107 TQYDFKRPIKSIALHPD---FSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGNLIAWANDDG-V 181 (846)
T ss_pred eeEecCCcceeEEeccc---hhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCcEEEEecCCC-c
Confidence 33445778888884443 1111 33444444444 322 234678999999998888877665 7
Q ss_pred EEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCC
Q 001349 958 QEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSN 1013 (1094)
Q Consensus 958 ~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~ 1013 (1094)
++||+.+++.+...+..........--..+.|.++..++++.+ .+|+|..++.
T Consensus 182 ~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~---d~v~i~~I~~ 234 (846)
T KOG2066|consen 182 KVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWG---DSVKICSIKK 234 (846)
T ss_pred EEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecC---CeEEEEEEec
Confidence 9999999887755443332222222345678888887777663 3899998873
No 321
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=7.2e-06 Score=90.57 Aligned_cols=243 Identities=17% Similarity=0.188 Sum_probs=163.9
Q ss_pred cCCCcEEEEEEeC-CEEEEEECCCeEEEEecCC-CcceeEEEecccCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCC
Q 001349 811 SENGKVLSIACFR-DKIFSGHSDGTIKVWTGRG-SILHLIQQIREHTKAVTGLAILQSGEMLYSGSL-DKTARVWSIGNE 887 (1094)
Q Consensus 811 ~h~~~V~~l~fsp-d~LaSgs~Dg~I~vWd~~t-~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~-DgtI~vWdi~~~ 887 (1094)
.|.+.|+.+.... +++.+++.||.++.|.-.. .....+..+..|-+.|.+++.+.+|..+.|++. |..++++|+.+-
T Consensus 7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 5888888887776 5999999999999997654 333566777889999999999999999999888 999999998774
Q ss_pred ceE-EEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEE-EEEEcCCeEEEEECCCC
Q 001349 888 EIH-CVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKV-YCGCQDGAIQEIDLATG 965 (1094)
Q Consensus 888 ~~~-~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l-~sgs~Dg~I~iwDl~~~ 965 (1094)
... .+.....++.+.. +...|.. +. .+ ++.-.+|.|.++|-..+
T Consensus 87 DminmiKL~~lPg~a~w---------v~skGd~------------------~s-------~IAVs~~~sg~i~VvD~~~d 132 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEW---------VTSKGDK------------------IS-------LIAVSLFKSGKIFVVDGFGD 132 (558)
T ss_pred chhhhcccccCCCceEE---------ecCCCCe------------------ee-------eEEeecccCCCcEEECCcCC
Confidence 211 1111111111110 1111110 00 23 33455788999998766
Q ss_pred ceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCC------CeEEEEec----------CCCCEEEE
Q 001349 966 TFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSN------YNMVGSLP----------TLSEVRAM 1029 (1094)
Q Consensus 966 ~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~------~~~~~~~~----------~~~~v~~l 1029 (1094)
.+... ..-.-|..+|..+.+.+-+...++....| .|.-|.... ......++ ......++
T Consensus 133 ~~q~~----~fkklH~sPV~~i~y~qa~Ds~vSiD~~g-mVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~ 207 (558)
T KOG0882|consen 133 FCQDG----YFKKLHFSPVKKIRYNQAGDSAVSIDISG-MVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSF 207 (558)
T ss_pred cCccc----eecccccCceEEEEeeccccceeeccccc-eeEeecCCCcccCccccccccccccchhhcccccccCccce
Confidence 53321 22344889999999999888888876665 999998862 11222222 24567899
Q ss_pred EEeCC--EEEEEEcCCeEEEEECCCCcEEEEecc-------------------------------cCC-cceEEEEEcCC
Q 001349 1030 VVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQT-------------------------------GTS-GKVQCMALDDN 1075 (1094)
Q Consensus 1030 ~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~-------------------------------~h~-~~I~~l~~Spd 1075 (1094)
.|+|+ .+.+-+.|..|++++..+|+.++.+.. .|. ..-+.+.|...
T Consensus 208 Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes 287 (558)
T KOG0882|consen 208 EFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDES 287 (558)
T ss_pred EEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCC
Confidence 99998 677778999999999999876654420 011 13456778888
Q ss_pred CCEEEEEeCCCcEEEEeC
Q 001349 1076 EEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1076 g~~L~sgs~DG~I~iWdl 1093 (1094)
|++|+-|+-=| |++.++
T Consensus 288 ~~flly~t~~g-ikvin~ 304 (558)
T KOG0882|consen 288 GNFLLYGTILG-IKVINL 304 (558)
T ss_pred CCEEEeeccee-EEEEEe
Confidence 89988887654 455543
No 322
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.29 E-value=1.2e-05 Score=83.24 Aligned_cols=238 Identities=14% Similarity=0.119 Sum_probs=136.1
Q ss_pred EEEEEEeCC-EEEEEECCCeEEEEecCCC----------cceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q 001349 816 VLSIACFRD-KIFSGHSDGTIKVWTGRGS----------ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSI 884 (1094)
Q Consensus 816 V~~l~fspd-~LaSgs~Dg~I~vWd~~t~----------~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi 884 (1094)
|+.+.++.+ .|+++..++.+......++ .....+.+..|+++-.+-+.+-.++.++++..||.+.+.+.
T Consensus 39 ~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~ 118 (319)
T KOG4714|consen 39 LSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFST 118 (319)
T ss_pred EEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEec
Confidence 667777765 7888888777666544333 11233444445444333333445678999999999999988
Q ss_pred CCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCC
Q 001349 885 GNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLAT 964 (1094)
Q Consensus 885 ~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~ 964 (1094)
+.- .. ..++.++..+. ....++...++.+... .+.+--.-+..+.|+++.
T Consensus 119 ~~~-~~----~~~~i~~~~~~--~as~~~~~~~~~i~s~-----------------------~~g~~n~~d~~~a~~~~p 168 (319)
T KOG4714|consen 119 DKD-LA----LMSRIPSIHSG--SASRKICRHGNSILSG-----------------------GCGNWNAQDNFYANTLDP 168 (319)
T ss_pred hHH-Hh----hhhhccccccc--ccccceeecccEEecC-----------------------CcceEeeccceeeecccc
Confidence 751 11 11111111111 1111122222221110 011111123345566554
Q ss_pred CceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec--CCCCEEEEEEeCC---EEEEE
Q 001349 965 GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP--TLSEVRAMVVSSE---LVYLG 1039 (1094)
Q Consensus 965 ~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~--~~~~v~~l~~spd---~l~sg 1039 (1094)
.+..... . -....|++++-+|....++.++.+++.+-+||.++.....++- |...++.+-|+|. .++++
T Consensus 169 ~~t~~~~----~--~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~ 242 (319)
T KOG4714|consen 169 IKTLIPS----K--KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTC 242 (319)
T ss_pred ccccccc----c--cccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEe
Confidence 3322110 0 1123488999998777666666666799999999875444332 7899999999986 89999
Q ss_pred EcCCeEEEEECCCCcEEE------------------E------ecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1040 CKGGTVEIWDQKRQIRIE------------------T------LQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1040 s~dg~I~vwd~~t~~~~~------------------~------l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
++||.+.-||..+. .+. . +.......|+++.. -|..|++|++-+.|++.+
T Consensus 243 sedGslw~wdas~~-~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV--~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 243 SEDGSLWHWDASTT-FLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDV--LGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred cCCCcEEEEcCCCc-eEEecCccccccccccCCcccceEeeeccccccceeeeeeec--cCceEEeccccceEEEec
Confidence 99999999997641 111 0 00011113444333 578999999999998875
No 323
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.29 E-value=0.00036 Score=74.17 Aligned_cols=227 Identities=11% Similarity=0.078 Sum_probs=117.0
Q ss_pred EEEEEECCCeEEEEecCCCcceeEEEec---ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccc
Q 001349 825 KIFSGHSDGTIKVWTGRGSILHLIQQIR---EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQI 901 (1094)
Q Consensus 825 ~LaSgs~Dg~I~vWd~~t~~~~~~~~l~---~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V 901 (1094)
.++..-.|..|-|-..++.-...+...+ .....=..++||||+.+||.+...|+|+++|+.+..+..+... ....
T Consensus 10 k~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~--~~~~ 87 (282)
T PF15492_consen 10 KLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPA--MSFP 87 (282)
T ss_pred cEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcc--cccC
Confidence 4444455566666554432111222222 1222345799999999999999999999999987543222211 0000
Q ss_pred eeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC--------CEEEEEEcCCeEEEEECCCCceeE-Eec
Q 001349 902 QNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ--------GKVYCGCQDGAIQEIDLATGTFAT-IQT 972 (1094)
Q Consensus 902 ~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~--------~~l~sgs~Dg~I~iwDl~~~~~~~-~~~ 972 (1094)
.. ....|..+.|-+ ..+++-..+|.++-|-+..++... ...
T Consensus 88 ~d------------------------------~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~ 137 (282)
T PF15492_consen 88 GD------------------------------LSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQEN 137 (282)
T ss_pred Cc------------------------------cccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceee
Confidence 00 111122222211 136666777777777654322110 000
Q ss_pred cceeecC-CCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEE---eCCEE-EEEEcCCe---
Q 001349 973 GHRKLLG-KANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVV---SSELV-YLGCKGGT--- 1044 (1094)
Q Consensus 973 ~~~~~~~-h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~---spd~l-~sgs~dg~--- 1044 (1094)
....+.. +...|+++.++|...+++.++.....-..+. .....+++-.+ +|.+. +....|+.
T Consensus 138 hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~----------a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~ 207 (282)
T PF15492_consen 138 HSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSK----------ASSCGLTAWRILSDSPYYKQVTSSEDDITAS 207 (282)
T ss_pred EEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcccc----------ccccCceEEEEcCCCCcEEEccccCcccccc
Confidence 0122323 3568999999998777666644321100000 00111111111 22222 22222221
Q ss_pred ---EEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1045 ---VEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1045 ---I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
-.+|.+-+.+... .+......|..|..||||+.|++...+|.|.+|++.
T Consensus 208 ~~~~~~~~~~~~~~fs-~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iP 259 (282)
T PF15492_consen 208 SKRRGLLRIPSFKFFS-RQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIP 259 (282)
T ss_pred ccccceeeccceeeee-ccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecC
Confidence 2344433322221 222345689999999999999999999999999973
No 324
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.26 E-value=0.00026 Score=79.93 Aligned_cols=258 Identities=13% Similarity=0.122 Sum_probs=158.9
Q ss_pred CCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCC------------
Q 001349 812 ENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDK------------ 877 (1094)
Q Consensus 812 h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~Dg------------ 877 (1094)
..-++..++|||. +|++... ..|.+|+..... .+..+. | ..|..+.|+|.+++|+|=+..+
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~-~~V~~~~g~~~~--~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~ 105 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHA-AGVECWGGPSKA--KLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFT 105 (561)
T ss_pred cCcchhheeecCcchheehhhc-cceEEccccchh--heeeee-c-CCceecccCcccceeeeeccCCccChhhccCCcc
Confidence 6678899999996 5665554 458999988773 333332 3 4689999999999999876543
Q ss_pred ---cEEEEECCCCceEEEEeccc-Ccc--ceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC-------------CCCc
Q 001349 878 ---TARVWSIGNEEIHCVQVHDI-KDQ--IQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS-------------SKYP 938 (1094)
Q Consensus 878 ---tI~vWdi~~~~~~~~~~~~~-~~~--V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~-------------~~~v 938 (1094)
.+.+||+.+|.+ +..+.. ..+ .+ ....|+.+.++++-. -...+.++.. ...+
T Consensus 106 ~~n~~~vwd~~sg~i--v~sf~~~~q~~~~W------p~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~~~p~~~lr~~gi 176 (561)
T COG5354 106 SKNNVFVWDIASGMI--VFSFNGISQPYLGW------PVLKFSIDDKYVARV-VGSSLYIHEITDNIEEHPFKNLRPVGI 176 (561)
T ss_pred ccCceeEEeccCcee--EeeccccCCccccc------ceeeeeecchhhhhh-ccCeEEEEecCCccccCchhhccccce
Confidence 489999999852 222211 111 11 123377776655443 2334444441 1345
Q ss_pred eEEEEeCC----EEEE-----EEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEEC--------
Q 001349 939 KCLALVQG----KVYC-----GCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSL-------- 1001 (1094)
Q Consensus 939 ~~l~~s~~----~l~s-----gs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~-------- 1001 (1094)
....++|. .++. +..++++++|.+..+..+... .+.. ..=..+.|++.+.++..--.
T Consensus 177 ~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk----~lfk--~~~~qLkW~~~g~~ll~l~~t~~ksnKs 250 (561)
T COG5354 177 LDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTK----NLFK--VSGVQLKWQVLGKYLLVLVMTHTKSNKS 250 (561)
T ss_pred eeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeee----eeEe--ecccEEEEecCCceEEEEEEEeeecccc
Confidence 55666654 1222 466778888888866655321 1110 11124556666555443210
Q ss_pred --CCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC----EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCC
Q 001349 1002 --DGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE----LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDN 1075 (1094)
Q Consensus 1002 --Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd----~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spd 1075 (1094)
....+.|+++....+.......++|..++|.|+ .+++|..+-.+.++|++.. ....+. .+.=+.+.|||.
T Consensus 251 yfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P---e~~rNT~~fsp~ 326 (561)
T COG5354 251 YFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP---EQKRNTIFFSPH 326 (561)
T ss_pred eeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEecC---CcccccccccCc
Confidence 013678888874443333345788999999887 4556678899999999876 444442 233456779999
Q ss_pred CCEEEEEeCC---CcEEEEeC
Q 001349 1076 EEFLVIGTSD---GRIQAWGL 1093 (1094)
Q Consensus 1076 g~~L~sgs~D---G~I~iWdl 1093 (1094)
+++++.++-| |.|-+||.
T Consensus 327 ~r~il~agF~nl~gni~i~~~ 347 (561)
T COG5354 327 ERYILFAGFDNLQGNIEIFDP 347 (561)
T ss_pred ccEEEEecCCccccceEEecc
Confidence 9998887765 56888874
No 325
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.26 E-value=2.9e-06 Score=63.66 Aligned_cols=38 Identities=34% Similarity=0.622 Sum_probs=36.6
Q ss_pred eeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 001349 846 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWS 883 (1094)
Q Consensus 846 ~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWd 883 (1094)
+++.++.+|.+.|++|+|+|++.+|+||+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57889999999999999999999999999999999997
No 326
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.26 E-value=4.4e-06 Score=96.84 Aligned_cols=226 Identities=12% Similarity=0.163 Sum_probs=137.1
Q ss_pred cCcEEEEeeCCCCeEEEeCC-----cceeecccCCCcEEEEEEeC---CEEEEEECCCeEEEEecCCCcceeEEEecccC
Q 001349 784 EMVKVLSNGHDSSADFWNHR-----ELVHVDSSENGKVLSIACFR---DKIFSGHSDGTIKVWTGRGSILHLIQQIREHT 855 (1094)
Q Consensus 784 d~~~l~s~s~dg~I~vWd~~-----~~~~~~~~h~~~V~~l~fsp---d~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~ 855 (1094)
-+..+++.+...+| +|++. ....++.+|...|+.+.|+| +.+++++.|-.|..||+.... .++..+..-.
T Consensus 81 ~~~wiVsts~qkai-iwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~-~p~ys~~~w~ 158 (1081)
T KOG0309|consen 81 KPYWIVSTSNQKAI-IWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH-RPFYSTSSWR 158 (1081)
T ss_pred CceeEEecCcchhh-hhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC-cceeeeeccc
Confidence 35567777776666 79875 35567889999999999987 599999999999999998764 3455554445
Q ss_pred CCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC
Q 001349 856 KAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS 934 (1094)
Q Consensus 856 ~~V~sv~fsp-dg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~ 934 (1094)
..-..|+|+. ++..+| .+..+.|++||.+.|.........+...|+.+. |..
T Consensus 159 s~asqVkwnyk~p~vla-sshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~-------fnr------------------- 211 (1081)
T KOG0309|consen 159 SAASQVKWNYKDPNVLA-SSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSID-------FNR------------------- 211 (1081)
T ss_pred ccCceeeecccCcchhh-hccCCceEEEeccCCCcceEEecccceeeehHH-------Hhh-------------------
Confidence 5667899997 555555 455567999999987522222222222222222 100
Q ss_pred CCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeC-----------CccEEEEEECCC
Q 001349 935 SKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN-----------GLVYTASTSLDG 1003 (1094)
Q Consensus 935 ~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~-----------~~~~las~s~Dg 1003 (1094)
+..+.+.+.+.||+|+.||.......... ......+|.--.+-| ++..+--.-.++
T Consensus 212 --------~~~s~~~s~~~d~tvkfw~y~kSt~e~~~-----~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n 278 (1081)
T KOG0309|consen 212 --------FKYSEIMSSSNDGTVKFWDYSKSTTESKR-----TVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCEN 278 (1081)
T ss_pred --------hhhhhhcccCCCCceeeecccccccccce-----eccccCcceeccccccCceeEeccccCCeeeeeccccc
Confidence 01235888899999999998754432111 011112232222222 222111111111
Q ss_pred CEEEEEECCC-CeEEEEec-CCCCEEEEEEe--------C---C-EEEEEEcCCeEEEEECCC
Q 001349 1004 AAVKMWSTSN-YNMVGSLP-TLSEVRAMVVS--------S---E-LVYLGCKGGTVEIWDQKR 1052 (1094)
Q Consensus 1004 ~~I~iwd~~~-~~~~~~~~-~~~~v~~l~~s--------p---d-~l~sgs~dg~I~vwd~~t 1052 (1094)
.-..|+..+ .+++.+|. |.+.|..+.|- - | .+++-|.|.++++|-+.+
T Consensus 279 -~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 279 -SDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred -hhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 334555543 45778887 44555444442 1 2 699999999999998764
No 327
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.24 E-value=7.8e-06 Score=89.66 Aligned_cols=92 Identities=17% Similarity=0.274 Sum_probs=78.8
Q ss_pred CCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEE
Q 001349 1002 DGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFL 1079 (1094)
Q Consensus 1002 Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L 1079 (1094)
|...+.+|....+.+.-.+-|-+.++.++|+|| +++++..|..|+|-.......+..|--||...|..++.-+ +..|
T Consensus 130 D~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~~~L 208 (390)
T KOG3914|consen 130 DVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-NYLL 208 (390)
T ss_pred CceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-Ccee
Confidence 335777888777777777778899999999999 8999999999999888877777787779999999999975 4569
Q ss_pred EEEeCCCcEEEEeCC
Q 001349 1080 VIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1080 ~sgs~DG~I~iWdls 1094 (1094)
++||.|++|++||+.
T Consensus 209 lS~sGD~tlr~Wd~~ 223 (390)
T KOG3914|consen 209 LSGSGDKTLRLWDIT 223 (390)
T ss_pred eecCCCCcEEEEecc
Confidence 999999999999974
No 328
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=5.6e-07 Score=101.67 Aligned_cols=53 Identities=26% Similarity=0.473 Sum_probs=46.5
Q ss_pred CceeccCccccccCcEEcCCcccccHHhHHHHHHhC----CCCCCCCCcCCCCCCCC
Q 001349 162 KDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERG----NSSCPITRQKLSSTKLP 214 (1094)
Q Consensus 162 ~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~----~~~CP~c~~~~~~~~~~ 214 (1094)
.+..||||++...=|+.+.|||-||..||-++|..+ ...||+|+..+..+++.
T Consensus 185 t~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~ 241 (513)
T KOG2164|consen 185 TDMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLL 241 (513)
T ss_pred cCCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhcccccee
Confidence 378999999999999999999999999999988754 34699999998887664
No 329
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.22 E-value=0.0048 Score=67.38 Aligned_cols=225 Identities=12% Similarity=0.089 Sum_probs=130.9
Q ss_pred EEEEeC-C--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEe-cCCCEEEEEeCCCcEEEEECCCCceEEEE
Q 001349 818 SIACFR-D--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAIL-QSGEMLYSGSLDKTARVWSIGNEEIHCVQ 893 (1094)
Q Consensus 818 ~l~fsp-d--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fs-pdg~~LaSgs~DgtI~vWdi~~~~~~~~~ 893 (1094)
++.|.+ + ++++....+.|..||..++. . ..+.... ...+++. ++|. ++.+..++ +.++|..+++...+.
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~--~-~~~~~~~--~~G~~~~~~~g~-l~v~~~~~-~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGE--V-EVIDLPG--PNGMAFDRPDGR-LYVADSGG-IAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTE--E-EEEESSS--EEEEEEECTTSE-EEEEETTC-EEEEETTTTEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCe--E-EEEecCC--CceEEEEccCCE-EEEEEcCc-eEEEecCCCcEEEEe
Confidence 567886 3 66666678999999999883 2 2222222 7778888 5655 45555544 566699998755544
Q ss_pred ecccCc-cceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEec
Q 001349 894 VHDIKD-QIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQT 972 (1094)
Q Consensus 894 ~~~~~~-~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~ 972 (1094)
...... +. ..++.+++.++|+..+.......... ...|.|..++.. ++......
T Consensus 77 ~~~~~~~~~----~~~ND~~vd~~G~ly~t~~~~~~~~~--------------------~~~g~v~~~~~~-~~~~~~~~ 131 (246)
T PF08450_consen 77 DLPDGGVPF----NRPNDVAVDPDGNLYVTDSGGGGASG--------------------IDPGSVYRIDPD-GKVTVVAD 131 (246)
T ss_dssp EEETTCSCT----EEEEEEEE-TTS-EEEEEECCBCTTC--------------------GGSEEEEEEETT-SEEEEEEE
T ss_pred eccCCCccc----CCCceEEEcCCCCEEEEecCCCcccc--------------------ccccceEEECCC-CeEEEEec
Confidence 432111 11 11223447888774333221110000 000456666666 44332211
Q ss_pred cceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCC-Ce-E--EE---EecCC-CCEEEEEEeCC-EEEEE-EcC
Q 001349 973 GHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSN-YN-M--VG---SLPTL-SEVRAMVVSSE-LVYLG-CKG 1042 (1094)
Q Consensus 973 ~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~-~~-~--~~---~~~~~-~~v~~l~~spd-~l~sg-s~d 1042 (1094)
.-...+.++|++++..+.......+.|..|++.. +. . .. .+... +..-.++++.+ .++++ ...
T Consensus 132 -------~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~ 204 (246)
T PF08450_consen 132 -------GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG 204 (246)
T ss_dssp -------EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT
T ss_pred -------CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC
Confidence 1245689999999987665554455899998853 21 1 12 22222 34888999987 44444 468
Q ss_pred CeEEEEECCCCcEEEEecccCCcceEEEEEc-CCCCEEEEEe
Q 001349 1043 GTVEIWDQKRQIRIETLQTGTSGKVQCMALD-DNEEFLVIGT 1083 (1094)
Q Consensus 1043 g~I~vwd~~t~~~~~~l~~~h~~~I~~l~~S-pdg~~L~sgs 1083 (1094)
+.|.++|.. |+.+..+... ...+++++|. ++.+.|+..+
T Consensus 205 ~~I~~~~p~-G~~~~~i~~p-~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 205 GRIVVFDPD-GKLLREIELP-VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp TEEEEEETT-SCEEEEEE-S-SSSEEEEEEESTTSSEEEEEE
T ss_pred CEEEEECCC-ccEEEEEcCC-CCCEEEEEEECCCCCEEEEEe
Confidence 999999988 8888888644 3489999994 6766665543
No 330
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.22 E-value=0.00021 Score=81.22 Aligned_cols=258 Identities=12% Similarity=0.109 Sum_probs=149.5
Q ss_pred cEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeC-----------CCcEEE
Q 001349 815 KVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSL-----------DKTARV 881 (1094)
Q Consensus 815 ~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~-----------DgtI~v 881 (1094)
.=+-+.|||. +|+|-..-| |.+|--.+- ..++.+ .|. .|.-+.|||+.+||+|-|. ...++|
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f--~r~~RF-~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-IALWGGESF--DRIQRF-YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-eeeecCccH--HHHHhc-cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEE
Confidence 3467899995 888887766 778965543 444555 355 4888999999999999764 157899
Q ss_pred EECCCCceEE-EEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCC------------CCceEEEEeCCEE
Q 001349 882 WSIGNEEIHC-VQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS------------KYPKCLALVQGKV 948 (1094)
Q Consensus 882 Wdi~~~~~~~-~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~------------~~v~~l~~s~~~l 948 (1094)
||+.+|.... +........+.. ...||.|+++++....+ .+.++... ..|+.+.|+|.
T Consensus 287 WDI~tG~lkrsF~~~~~~~~~WP------~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~-- 357 (698)
T KOG2314|consen 287 WDIATGLLKRSFPVIKSPYLKWP------IFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPT-- 357 (698)
T ss_pred EEccccchhcceeccCCCccccc------eEEeccCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCC--
Confidence 9999996332 222222222222 23489999988776653 44555432 35666777765
Q ss_pred EEEEcCCeEEEEECCCCceeEEe-----ccc---eeecCCCCCeEEEEEeCCccEEEEEEC-------CC--CEEEEEEC
Q 001349 949 YCGCQDGAIQEIDLATGTFATIQ-----TGH---RKLLGKANPVHALQVHNGLVYTASTSL-------DG--AAVKMWST 1011 (1094)
Q Consensus 949 ~sgs~Dg~I~iwDl~~~~~~~~~-----~~~---~~~~~h~~~V~sl~fs~~~~~las~s~-------Dg--~~I~iwd~ 1011 (1094)
+..+-+|-..+....... +.. ++-.-|.-.=..+-|..+|.+++.--. .| ..+.|+.+
T Consensus 358 -----~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfri 432 (698)
T KOG2314|consen 358 -----SNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRI 432 (698)
T ss_pred -----cceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEe
Confidence 233444544333221110 000 111111111122344456666544210 00 13455555
Q ss_pred CCCe-EEEEecCCCCEEEEEEeCC--EEEE--EE-cCCeEEEEECCC----CcEEEEecccCCcceEEEEEcCCCCEEEE
Q 001349 1012 SNYN-MVGSLPTLSEVRAMVVSSE--LVYL--GC-KGGTVEIWDQKR----QIRIETLQTGTSGKVQCMALDDNEEFLVI 1081 (1094)
Q Consensus 1012 ~~~~-~~~~~~~~~~v~~l~~spd--~l~s--gs-~dg~I~vwd~~t----~~~~~~l~~~h~~~I~~l~~Spdg~~L~s 1081 (1094)
+... ++....-...|...+|.|. .+++ |- ...++.+|.+.+ ...+..+. ....+.+.|+|.|++++.
T Consensus 433 reKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d---k~~~N~vfwsPkG~fvvv 509 (698)
T KOG2314|consen 433 REKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD---KKFANTVFWSPKGRFVVV 509 (698)
T ss_pred eccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc---ccccceEEEcCCCcEEEE
Confidence 4322 3444445677888999886 3332 32 246899998873 23444453 245788999999999887
Q ss_pred Ee---CCCcEEEEeCC
Q 001349 1082 GT---SDGRIQAWGLS 1094 (1094)
Q Consensus 1082 gs---~DG~I~iWdls 1094 (1094)
++ ..|.+.++|++
T Consensus 510 a~l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 510 AALVSRRGDLEFYDTD 525 (698)
T ss_pred EEecccccceEEEecc
Confidence 64 46888888863
No 331
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=6.7e-07 Score=92.77 Aligned_cols=52 Identities=19% Similarity=0.398 Sum_probs=45.0
Q ss_pred CCceeccCccccccCcEEcCCcccccHHhHHH-HHHhCCCCCCCCCcCCCCCC
Q 001349 161 PKDFVCPITTHIFDDPVTLETGQTYERRAIQE-WIERGNSSCPITRQKLSSTK 212 (1094)
Q Consensus 161 ~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~-~~~~~~~~CP~c~~~~~~~~ 212 (1094)
..++.|+||++.+.+|+-++|||-||..||-. |-......||.||+....+.
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 45899999999999999999999999999999 76665556999998766544
No 332
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.16 E-value=0.0026 Score=69.73 Aligned_cols=238 Identities=16% Similarity=0.201 Sum_probs=144.9
Q ss_pred EEEEEeCC---EEEEEECCCe-EEEEecCCCcceeEEEecccCCCe--EEEEEecCCCEEEEEeC-----CCcEEEEECC
Q 001349 817 LSIACFRD---KIFSGHSDGT-IKVWTGRGSILHLIQQIREHTKAV--TGLAILQSGEMLYSGSL-----DKTARVWSIG 885 (1094)
Q Consensus 817 ~~l~fspd---~LaSgs~Dg~-I~vWd~~t~~~~~~~~l~~H~~~V--~sv~fspdg~~LaSgs~-----DgtI~vWdi~ 885 (1094)
..++.+|+ .++.+-.-|+ ..+||..++ .....+....+.- -.-.||+||++|++.=. .|.|-|||..
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g--~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTG--QLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCC--ceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 34555552 5555555554 556888887 4444443322221 12579999999998744 4889999999
Q ss_pred CCceEEEEec-ccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCC
Q 001349 886 NEEIHCVQVH-DIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLAT 964 (1094)
Q Consensus 886 ~~~~~~~~~~-~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~ 964 (1094)
.+- ..+..+ .+. +.|..+.+.|||+.+++.+.. |..--.. -..++-..+.+.++.+.|..+
T Consensus 86 ~~~-~ri~E~~s~G-------IGPHel~l~pDG~tLvVANGG--I~Thpd~--------GR~kLNl~tM~psL~~ld~~s 147 (305)
T PF07433_consen 86 RGY-RRIGEFPSHG-------IGPHELLLMPDGETLVVANGG--IETHPDS--------GRAKLNLDTMQPSLVYLDARS 147 (305)
T ss_pred CCc-EEEeEecCCC-------cChhhEEEcCCCCEEEEEcCC--CccCccc--------CceecChhhcCCceEEEecCC
Confidence 432 333222 222 223334489999888776432 1100000 001244456677788888888
Q ss_pred CceeEEeccceee--cCCCCCeEEEEEeCCccEEEEEECCCC------EEEEEECCCCeEEEEec--------CCCCEEE
Q 001349 965 GTFATIQTGHRKL--LGKANPVHALQVHNGLVYTASTSLDGA------AVKMWSTSNYNMVGSLP--------TLSEVRA 1028 (1094)
Q Consensus 965 ~~~~~~~~~~~~~--~~h~~~V~sl~fs~~~~~las~s~Dg~------~I~iwd~~~~~~~~~~~--------~~~~v~~ 1028 (1094)
|+.+... .+ .-|...|.-+++.+++...+..-..|- .|-+++.. .....+. -...+-+
T Consensus 148 G~ll~q~----~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gS 221 (305)
T PF07433_consen 148 GALLEQV----ELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGS 221 (305)
T ss_pred Cceeeee----ecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEE
Confidence 8877431 23 336678999999999988777655441 33344332 2222222 2467899
Q ss_pred EEEeCC--EEEE-EEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeC
Q 001349 1029 MVVSSE--LVYL-GCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTS 1084 (1094)
Q Consensus 1029 l~~spd--~l~s-gs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~ 1084 (1094)
|+++++ .+++ +-..|.+.+||..++..+.... -..+..++-.+++ +++|.+.
T Consensus 222 Ia~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~---l~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 222 IAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP---LPDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred EEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc---cCceeeeeecCCc-eEEeCCC
Confidence 999988 4544 4467899999999999887763 3357788877766 5665543
No 333
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.14 E-value=1.7e-06 Score=101.82 Aligned_cols=217 Identities=13% Similarity=0.155 Sum_probs=144.7
Q ss_pred ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCC--cEE
Q 001349 805 LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDK--TAR 880 (1094)
Q Consensus 805 ~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~Dg--tI~ 880 (1094)
....+..|+...+|++|+.+ +|+.|+-.|.|+++++.+| .......+|..+|+-+.=+.||..+.+.+.-. -..
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG--~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG--SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCc--cccccccccccccccccccCCcceeeeeccccCchHH
Confidence 44567788999999999985 9999999999999999999 67778889999999999888998777665432 357
Q ss_pred EEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCC--EEEEEEcCCeEE
Q 001349 881 VWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQG--KVYCGCQDGAIQ 958 (1094)
Q Consensus 881 vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~--~l~sgs~Dg~I~ 958 (1094)
+|+...-- +++.+ |. .-.++.|++. .-+.|+......
T Consensus 1171 LW~~~s~~----------~~~Hs---------f~----------------------ed~~vkFsn~~q~r~~gt~~d~a~ 1209 (1516)
T KOG1832|consen 1171 LWDASSTG----------GPRHS---------FD----------------------EDKAVKFSNSLQFRALGTEADDAL 1209 (1516)
T ss_pred Hhcccccc----------Ccccc---------cc----------------------ccceeehhhhHHHHHhcccccceE
Confidence 89886520 01111 10 1122333321 134555567789
Q ss_pred EEECCCCceeEEe-ccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC--E
Q 001349 959 EIDLATGTFATIQ-TGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--L 1035 (1094)
Q Consensus 959 iwDl~~~~~~~~~-~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~ 1035 (1094)
+||+.++....++ .+. .+....-++..|+|+..++.- || .+||++..+.++.|..-..-..-.|+|+ -
T Consensus 1210 ~YDvqT~~~l~tylt~~---~~~~y~~n~a~FsP~D~LIln---dG---vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~e 1280 (1516)
T KOG1832|consen 1210 LYDVQTCSPLQTYLTDT---VTSSYSNNLAHFSPCDTLILN---DG---VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNE 1280 (1516)
T ss_pred EEecccCcHHHHhcCcc---hhhhhhccccccCCCcceEee---Cc---eeeeeccHHHHhhhhhheecccccccCCCce
Confidence 9999999876442 211 112223367788888877653 45 7899998887777763222223356666 4
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEE
Q 001349 1036 VYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVI 1081 (1094)
Q Consensus 1036 l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~s 1081 (1094)
+++-+ .|||+++.+.++....- .-..+.|+..|..++.
T Consensus 1281 VIINS-----EIwD~RTF~lLh~VP~L---dqc~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1281 VIINS-----EIWDMRTFKLLHSVPSL---DQCAVTFNSTGDVMYA 1318 (1516)
T ss_pred EEeec-----hhhhhHHHHHHhcCccc---cceEEEeccCccchhh
Confidence 55444 48999998877766321 2356677777776543
No 334
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.14 E-value=0.00086 Score=85.97 Aligned_cols=267 Identities=14% Similarity=0.108 Sum_probs=160.4
Q ss_pred CcEEEEEEeCC----EEEEEECCC--eEEEEecCCCc-ceeEEEec-----ccCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 001349 814 GKVLSIACFRD----KIFSGHSDG--TIKVWTGRGSI-LHLIQQIR-----EHTKAVTGLAILQSGEMLYSGSLDKTARV 881 (1094)
Q Consensus 814 ~~V~~l~fspd----~LaSgs~Dg--~I~vWd~~t~~-~~~~~~l~-----~H~~~V~sv~fspdg~~LaSgs~DgtI~v 881 (1094)
..+...+|... +++++.... .|.+....... ...+..+. ...+.|.++.|-++...++.+..+|.|.+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 45666677653 444444433 34444333221 12344443 34567999999999999999999999999
Q ss_pred E----ECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCC-ceEEEEe-----CCEEEEE
Q 001349 882 W----SIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKY-PKCLALV-----QGKVYCG 951 (1094)
Q Consensus 882 W----di~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~-v~~l~~s-----~~~l~sg 951 (1094)
. +..+....++... ...|.+++ ||||+..+++.+.++++.+....-. +.-.... .+..++.
T Consensus 102 ~~~~~~~~~~~~E~VG~v--d~GI~a~~-------WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsV 172 (928)
T PF04762_consen 102 VREDPDPDEDEIEIVGSV--DSGILAAS-------WSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSV 172 (928)
T ss_pred EEccCCCCCceeEEEEEE--cCcEEEEE-------ECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeee
Confidence 9 6666655555443 66777777 9999999999999988877654321 2222221 1233443
Q ss_pred EcCCeEEEEECCCCceeE------Eec--cceeecCCCCCeEEEEEeCCccEEEEEEC---CC--CEEEEEECCCCeEEE
Q 001349 952 CQDGAIQEIDLATGTFAT------IQT--GHRKLLGKANPVHALQVHNGLVYTASTSL---DG--AAVKMWSTSNYNMVG 1018 (1094)
Q Consensus 952 s~Dg~I~iwDl~~~~~~~------~~~--~~~~~~~h~~~V~sl~fs~~~~~las~s~---Dg--~~I~iwd~~~~~~~~ 1018 (1094)
+....=.-|.-..|+... ..+ ....+. +...-..++|-.||.|+|..+. .| +.+|||+-. |....
T Consensus 173 GWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~s 250 (928)
T PF04762_consen 173 GWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQS 250 (928)
T ss_pred ccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEe
Confidence 332221111111121100 000 001122 4446678999999999998875 44 789999975 65444
Q ss_pred Eec-CCCCEEEEEEeCC--EEEEEEc---CCeEEEEECCCCcEEEEecc---cCCcceEEEEEcCCCCEEEEEeCCCcEE
Q 001349 1019 SLP-TLSEVRAMVVSSE--LVYLGCK---GGTVEIWDQKRQIRIETLQT---GTSGKVQCMALDDNEEFLVIGTSDGRIQ 1089 (1094)
Q Consensus 1019 ~~~-~~~~v~~l~~spd--~l~sgs~---dg~I~vwd~~t~~~~~~l~~---~h~~~I~~l~~Spdg~~L~sgs~DG~I~ 1089 (1094)
+-. -.+--.+++|.|. ++++.-. ...|.+|..+ |-.-..|.- .....|..+.|++|+..|+..-.|. |+
T Consensus 251 tSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vq 328 (928)
T PF04762_consen 251 TSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQ 328 (928)
T ss_pred ccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ce
Confidence 333 2333457889887 5555432 3567777654 333333321 2345899999999999999987665 99
Q ss_pred EEeC
Q 001349 1090 AWGL 1093 (1094)
Q Consensus 1090 iWdl 1093 (1094)
+|-.
T Consensus 329 LWt~ 332 (928)
T PF04762_consen 329 LWTR 332 (928)
T ss_pred EEEe
Confidence 9964
No 335
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.13 E-value=6.2e-06 Score=61.79 Aligned_cols=39 Identities=31% Similarity=0.618 Sum_probs=36.0
Q ss_pred CcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1053 QIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1053 ~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
++++.++ .+|.+.|++++|+|++.+|++|+.||+|++||
T Consensus 1 g~~~~~~-~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTF-RGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEE-ESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEE-cCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 3567888 59999999999999999999999999999997
No 336
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.13 E-value=5e-06 Score=89.05 Aligned_cols=154 Identities=17% Similarity=0.175 Sum_probs=110.1
Q ss_pred EEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc---eEEEEecccCcccee
Q 001349 827 FSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE---IHCVQVHDIKDQIQN 903 (1094)
Q Consensus 827 aSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~---~~~~~~~~~~~~V~~ 903 (1094)
++.+.+-.|-+-|+.|| ..+.|. ..+.|.++.|...++++..|..+|.|.+.|++.+. ..+.....|++.|++
T Consensus 228 fs~G~sqqv~L~nvetg---~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvts 303 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETG---HQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTS 303 (425)
T ss_pred ecccccceeEEEEeecc---cccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhh
Confidence 66677778888999998 334444 67789999999989999999999999999998751 222223333333333
Q ss_pred eeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCC
Q 001349 904 LAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANP 983 (1094)
Q Consensus 904 v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~ 983 (1094)
+. .+.|++..+++.+.+|.|.+||.+.-++.. ......||.+.
T Consensus 304 lq----------------------------------~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~---~V~qYeGHvN~ 346 (425)
T KOG2695|consen 304 LQ----------------------------------ILQFSQQKLMASDMTGKIKLYDLRATKCKK---SVMQYEGHVNL 346 (425)
T ss_pred hh----------------------------------hhccccceEeeccCcCceeEeeehhhhccc---ceeeeeccccc
Confidence 32 233455678899999999999998766621 11456677665
Q ss_pred eEEEEE--eCCccEEEEEECCCCEEEEEECCCCeEEEEecC
Q 001349 984 VHALQV--HNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT 1022 (1094)
Q Consensus 984 V~sl~f--s~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~ 1022 (1094)
-..+-+ ++....+++++.| ...+||.++++..+.+++.
T Consensus 347 ~a~l~~~v~~eeg~I~s~GdD-cytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 347 SAYLPAHVKEEEGSIFSVGDD-CYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred ccccccccccccceEEEccCe-eEEEEEecccCceeeccCC
Confidence 555555 3566667777766 5999999999999998874
No 337
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.12 E-value=0.0047 Score=64.48 Aligned_cols=294 Identities=15% Similarity=0.141 Sum_probs=146.6
Q ss_pred cEEEEeeCCCCeEEEeCCcceeeccc-CCCcEEEEEE-eCCEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEE
Q 001349 786 VKVLSNGHDSSADFWNHRELVHVDSS-ENGKVLSIAC-FRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAI 863 (1094)
Q Consensus 786 ~~l~s~s~dg~I~vWd~~~~~~~~~~-h~~~V~~l~f-spd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~f 863 (1094)
.+++.|+..+.+.--|.......+.. -.+.|.+-+. -.|+++.|++.|.+++-++++| ...+.+..-..-=.....
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tG--s~~w~f~~~~~vk~~a~~ 101 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTG--SQIWNFVILETVKVRAQC 101 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecch--hheeeeeehhhhccceEE
Confidence 57788888888877777633222221 1233333222 4679999999999999999999 555555432221122344
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccce---eeeecCceE-EEeeCCCeEEEEEeCCe-EEEEcCC--C
Q 001349 864 LQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQ---NLAVSNSIL-CFIPQGAGIKVHLRNGK-TKLLNSS--K 936 (1094)
Q Consensus 864 spdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~---~v~~~~~~~-~fspdg~~l~~~~~~g~-i~l~~~~--~ 936 (1094)
.+++..+..|+.|++.+..|..+.. ++....-.+.+. .++..+..+ +-+..|..+++.-.++. ..+|.+. +
T Consensus 102 d~~~glIycgshd~~~yalD~~~~~--cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~~ 179 (354)
T KOG4649|consen 102 DFDGGLIYCGSHDGNFYALDPKTYG--CVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAATRFG 179 (354)
T ss_pred cCCCceEEEecCCCcEEEecccccc--eEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhhcCC
Confidence 5689999999999999999998853 332222122111 111111122 22334444444444432 3445432 1
Q ss_pred CceEE-EEeCCEEEEEEcCCeEEE--------EECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEE
Q 001349 937 YPKCL-ALVQGKVYCGCQDGAIQE--------IDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVK 1007 (1094)
Q Consensus 937 ~v~~l-~~s~~~l~sgs~Dg~I~i--------wDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~ 1007 (1094)
.+.+- .+....+..++.||.+.- |..+++..+..-+ -..|. .-..+.+..++-+.+.....| --
T Consensus 180 PiF~splcv~~sv~i~~VdG~l~~f~~sG~qvwr~~t~GpIf~~P----c~s~P-s~q~i~~~~~~Cf~~~~p~~g--hL 252 (354)
T KOG4649|consen 180 PIFASPLCVGSSVIITTVDGVLTSFDESGRQVWRPATKGPIFMEP----CESRP-SCQQISLENENCFCAPLPIAG--HL 252 (354)
T ss_pred ccccCceeccceEEEEEeccEEEEEcCCCcEEEeecCCCceeccc----ccCCC-cceEEEEecCCeEEEeccccc--eE
Confidence 22111 011122344445555544 4444444332111 11111 113344444444444433332 45
Q ss_pred EEECCCCeEEEEecCC---CCEEEEEEe-CCEEEEEEcCCeEEEEECCCCcEEEEecccCCc---ceEEEE-----E-cC
Q 001349 1008 MWSTSNYNMVGSLPTL---SEVRAMVVS-SELVYLGCKGGTVEIWDQKRQIRIETLQTGTSG---KVQCMA-----L-DD 1074 (1094)
Q Consensus 1008 iwd~~~~~~~~~~~~~---~~v~~l~~s-pd~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~---~I~~l~-----~-Sp 1074 (1094)
+|..++|...+.+-.. ......-.| |.++..++.||.+.|.-.... +... ..|.+ .+..+- | ||
T Consensus 253 ~w~~~~g~t~~vy~~p~l~F~~h~~~~S~~~ll~~~s~dgkv~il~~~~s--l~~~-~s~~g~lq~~~~~el~~eIFsSP 329 (354)
T KOG4649|consen 253 LWATQSGTTLHVYLSPKLRFDLHSPGISYPKLLRRSSGDGKVMILMTSKS--LAEI-SSNGGELQNLEAIELSNEIFSSP 329 (354)
T ss_pred EEEecCCcEEEEEeCcccceeccCCCCcchhhhhhhcCCCcEEEEEeccc--cccc-ccCCCccceEEEeecCcccccCC
Confidence 6777766443332211 111111112 336777888998888743221 2222 11222 122221 2 22
Q ss_pred ---CCCEEEEEeCCCcEEEEeCC
Q 001349 1075 ---NEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1075 ---dg~~L~sgs~DG~I~iWdls 1094 (1094)
+| .|+.|+.|..|+-||+.
T Consensus 330 vii~g-rl~igcRDdYv~cldl~ 351 (354)
T KOG4649|consen 330 VIIDG-RLLIGCRDDYVRCLDLD 351 (354)
T ss_pred eEEcc-EEEEEEccCeEEEEecc
Confidence 44 57788899999999973
No 338
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.10 E-value=0.003 Score=76.29 Aligned_cols=121 Identities=15% Similarity=0.199 Sum_probs=77.9
Q ss_pred EEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEE----------------EECCCCEEEEEE
Q 001349 947 KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTAS----------------TSLDGAAVKMWS 1010 (1094)
Q Consensus 947 ~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las----------------~s~Dg~~I~iwd 1010 (1094)
.+++++.+|.+...|..+|+.+...... ...+..+++..|+.+ ...+| .+.-.|
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~---------~~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G-~l~AlD 372 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEV---------EQPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKG-GLAALD 372 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEee---------ccccccCCceEEEccccccccCcccccCCCCCCCce-EEEEEe
Confidence 3788899999999999999987543210 011222333222221 11233 788889
Q ss_pred CCCCeEEEEecCC---------CC--EEEEEEeCCEEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCC
Q 001349 1011 TSNYNMVGSLPTL---------SE--VRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEE 1077 (1094)
Q Consensus 1011 ~~~~~~~~~~~~~---------~~--v~~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~ 1077 (1094)
..+|+.+.+.... .. ...+....+.+++++.||.|+.+|..+|+.+..++.+......=+.|..+|+
T Consensus 373 ~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P~~~~~~g~ 450 (488)
T cd00216 373 PKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQATPMTYEVNGK 450 (488)
T ss_pred CCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEECCCCceEcCEEEEeCCE
Confidence 9999888777633 11 1245667789999999999999999999999888643322222233444553
No 339
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.09 E-value=0.0019 Score=76.09 Aligned_cols=193 Identities=12% Similarity=0.029 Sum_probs=115.5
Q ss_pred CcEEEEEEeCC--E-EEEEEC---CCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEE-eCC--CcEEEEEC
Q 001349 814 GKVLSIACFRD--K-IFSGHS---DGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSG-SLD--KTARVWSI 884 (1094)
Q Consensus 814 ~~V~~l~fspd--~-LaSgs~---Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSg-s~D--gtI~vWdi 884 (1094)
+.+..-.|+|| . ++..+. +..|.++|+.++....+. ...+.+....|+|||+.++.. +.+ ..|.++|+
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt---~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl 264 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA---SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDT 264 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe---cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEEC
Confidence 37788999996 3 554333 356899999988443333 244556678899999876543 333 46777888
Q ss_pred CCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCC
Q 001349 885 GNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLAT 964 (1094)
Q Consensus 885 ~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~ 964 (1094)
.++....+... ...... ..|+|||+.++..+..+ ....|.++|+.+
T Consensus 265 ~~g~~~~LT~~--~~~d~~-------p~~SPDG~~I~F~Sdr~-------------------------g~~~Iy~~dl~~ 310 (419)
T PRK04043 265 NTKTLTQITNY--PGIDVN-------GNFVEDDKRIVFVSDRL-------------------------GYPNIFMKKLNS 310 (419)
T ss_pred CCCcEEEcccC--CCccCc-------cEECCCCCEEEEEECCC-------------------------CCceEEEEECCC
Confidence 88764443322 111111 23999999765443211 113677788887
Q ss_pred CceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCC--------CEEEEEECCCCeEEEEecCCCCEEEEEEeCC--
Q 001349 965 GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG--------AAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE-- 1034 (1094)
Q Consensus 965 ~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg--------~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd-- 1034 (1094)
++..... ..+.. ...|+|++.+++..+..+ ..|.+.|+.++.. +.+..........|+||
T Consensus 311 g~~~rlt-----~~g~~----~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~~~~~~p~~SPDG~ 380 (419)
T PRK04043 311 GSVEQVV-----FHGKN----NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTANGVNQFPRFSSDGG 380 (419)
T ss_pred CCeEeCc-----cCCCc----CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCCCCcCCeEECCCCC
Confidence 7764221 11111 237899999887776542 3688888887754 44443333346889998
Q ss_pred EEEEEE-cC--CeEEEEECCCC
Q 001349 1035 LVYLGC-KG--GTVEIWDQKRQ 1053 (1094)
Q Consensus 1035 ~l~sgs-~d--g~I~vwd~~t~ 1053 (1094)
.++..+ .. ..+.+.++...
T Consensus 381 ~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 381 SIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred EEEEEEccCCcEEEEEEecCCC
Confidence 343333 22 24666676543
No 340
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=1e-06 Score=104.75 Aligned_cols=52 Identities=15% Similarity=0.379 Sum_probs=48.6
Q ss_pred ceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCC
Q 001349 163 DFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLP 214 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~ 214 (1094)
-++||.|..-.+|.|++.|||.||..||+.-++.....||.|+..|...++.
T Consensus 643 ~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~ 694 (698)
T KOG0978|consen 643 LLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVH 694 (698)
T ss_pred ceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccccc
Confidence 6899999999999999999999999999998887788999999999988875
No 341
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.09 E-value=0.0039 Score=68.15 Aligned_cols=208 Identities=10% Similarity=0.015 Sum_probs=126.9
Q ss_pred cCcEEEEeeCCCCeEEEeCCcceeecccCCCcEEEEEEe-CC-EEEEEECCCeEEEEecCCCcceeEEEec--c-cCCCe
Q 001349 784 EMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACF-RD-KIFSGHSDGTIKVWTGRGSILHLIQQIR--E-HTKAV 858 (1094)
Q Consensus 784 d~~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~fs-pd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~--~-H~~~V 858 (1094)
++..+++-...+.|..|+............+ ...+++. ++ .++.+..++. .++|..++....+.... . .....
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~-~~G~~~~~~~g~l~v~~~~~~-~~~d~~~g~~~~~~~~~~~~~~~~~~ 88 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG-PNGMAFDRPDGRLYVADSGGI-AVVDPDTGKVTVLADLPDGGVPFNRP 88 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEESSS-EEEEEEECTTSEEEEEETTCE-EEEETTTTEEEEEEEEETTCSCTEEE
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEEEEecCC-CceEEEEccCCEEEEEEcCce-EEEecCCCcEEEEeeccCCCcccCCC
Confidence 4666777777889999998754433322223 6777777 55 7777776554 55599998655555552 1 34568
Q ss_pred EEEEEecCCCEEEEEeCC--------CcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEE
Q 001349 859 TGLAILQSGEMLYSGSLD--------KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTK 930 (1094)
Q Consensus 859 ~sv~fspdg~~LaSgs~D--------gtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~ 930 (1094)
+.+++.|+|++.++.... |.|..++.. ++....... - ..++.++|+|+++.+
T Consensus 89 ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~--~-------~~pNGi~~s~dg~~l---------- 148 (246)
T PF08450_consen 89 NDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG--L-------GFPNGIAFSPDGKTL---------- 148 (246)
T ss_dssp EEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE--E-------SSEEEEEEETTSSEE----------
T ss_pred ceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC--c-------ccccceEECCcchhe----------
Confidence 899999999988776654 446666666 432222111 1 123455588888864
Q ss_pred EEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCce-eEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEE
Q 001349 931 LLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTF-ATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMW 1009 (1094)
Q Consensus 931 l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~-~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iw 1009 (1094)
+++-+..+.|..|++..... +........+.........++++.++.+.++.... +.|.++
T Consensus 149 -----------------yv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~-~~I~~~ 210 (246)
T PF08450_consen 149 -----------------YVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG-GRIVVF 210 (246)
T ss_dssp -----------------EEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT-TEEEEE
T ss_pred -----------------eecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC-CEEEEE
Confidence 33445567777787753322 11100001111212347789999888877765545 499999
Q ss_pred ECCCCeEEEEecCC-CCEEEEEEe
Q 001349 1010 STSNYNMVGSLPTL-SEVRAMVVS 1032 (1094)
Q Consensus 1010 d~~~~~~~~~~~~~-~~v~~l~~s 1032 (1094)
|.. |+.+..+... ..+++++|.
T Consensus 211 ~p~-G~~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 211 DPD-GKLLREIELPVPRPTNCAFG 233 (246)
T ss_dssp ETT-SCEEEEEE-SSSSEEEEEEE
T ss_pred CCC-ccEEEEEcCCCCCEEEEEEE
Confidence 987 8888888743 689999995
No 342
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=0.00011 Score=80.53 Aligned_cols=80 Identities=11% Similarity=0.069 Sum_probs=69.5
Q ss_pred eeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecC-CCEEEEEeCCCcEEE
Q 001349 806 VHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS-GEMLYSGSLDKTARV 881 (1094)
Q Consensus 806 ~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspd-g~~LaSgs~DgtI~v 881 (1094)
.+.+.+|...|..++|||. ++..++.+.+|+|.|+.+. .++..+..| ..+|+++|.-| .++|+.|-..|.|.|
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~--~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS--CVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLV 262 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccc--eeeeheecc-CCceeeeeccCCcceeEEeccCceEEE
Confidence 4467788999999999994 7899999999999999998 677777777 88999999885 568888888999999
Q ss_pred EECCCCc
Q 001349 882 WSIGNEE 888 (1094)
Q Consensus 882 Wdi~~~~ 888 (1094)
||++..+
T Consensus 263 yD~R~~~ 269 (463)
T KOG1645|consen 263 YDMRQPE 269 (463)
T ss_pred EEccCCC
Confidence 9998764
No 343
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.08 E-value=0.00053 Score=84.12 Aligned_cols=366 Identities=16% Similarity=0.185 Sum_probs=223.4
Q ss_pred HHHHHHHHHHhhhccccchHhHHHHHHHHHHHHHhccchHHHHhhchhHHHhhhHhhhcc--CCchHHHHHHHHHHHhhc
Q 001349 265 TITELKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFN--SVDPRVLEATIFLLSELG 342 (1094)
Q Consensus 265 ~~~~l~~~i~~L~~s~~l~~~e~a~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~v~~L~~--s~~~~v~~~av~~L~~l~ 342 (1094)
+++.+...|+.+-. ...+..++...|..+++.-+ |..- ......++..+.++|-. -++-++.-+.+++...++
T Consensus 121 ~~~~~d~yiE~lYe--~~~ek~~~~~~il~La~~~~-NL~~--l~~ne~l~~aL~RvLred~~ks~~l~tnI~~iF~~fS 195 (708)
T PF05804_consen 121 SINDLDEYIELLYE--DIPEKIRGTSLILQLARNPE-NLEE--LVQNETLMSALARVLREDWKKSVELATNIIYIFFCFS 195 (708)
T ss_pred CHHHHHHHHHHHhc--ccHHHHHHHHHHHHHhCCcc-hHHH--HHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 46788888887764 24666778888888886532 2222 23455666666666655 334556667777777665
Q ss_pred ccccchhhhhccCCCcHHHHH-HHHhcC--hHHHHH-HHHhc----CCChHHHHHhhhh-HHHHHHHHhccccccccccC
Q 001349 343 SRDKSVIHTLTRVESDVERIV-ALFKKG--LLEAVV-LIDLL----RPSTRTLIEMDMM-ESLMTVIKKKEEDFLKMCLK 413 (1094)
Q Consensus 343 s~~~~~~~~i~~~~~~~~~L~-~lLk~g--~~~Aa~-~l~~L----~~~~~~~~~~~~~-~~Ll~~l~~~~~~~~~~~~~ 413 (1094)
.... ...+.. ..-++.|. .++-.. +.+... -+... +..+.++...+.. +.+-.++++.. . +
T Consensus 196 ~f~~--fH~~l~-~~kiG~l~m~iie~Elkr~~~w~~~l~~~~~~~~~~~~~~~~~~~~~kk~~~l~~kQe-q-L----- 265 (708)
T PF05804_consen 196 NFSQ--FHPILA-HYKIGSLCMEIIEHELKRHDLWQEELRKKKKAAEEKPEAKKDYEKELKKLQTLIRKQE-Q-L----- 265 (708)
T ss_pred hHHH--HHHHHH-hccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhHHHHHHHHHHHHHHHH-H-H-----
Confidence 4433 111110 01111111 221111 111000 00000 0111111111111 22222222211 1 0
Q ss_pred chhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHH
Q 001349 414 PKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVM 493 (1094)
Q Consensus 414 ~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~ 493 (1094)
=..++++|-+| +.+..+...++..|.+++|+++|+.++.+-...++++|-++ .-.+.+++.|+..+.+++++
T Consensus 266 -lrv~~~lLlNL------Aed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkL-Si~~ENK~~m~~~giV~kL~ 337 (708)
T PF05804_consen 266 -LRVAFYLLLNL------AEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKL-SIFKENKDEMAESGIVEKLL 337 (708)
T ss_pred -HHHHHHHHHHH------hcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHH-cCCHHHHHHHHHcCCHHHHH
Confidence 12456666655 77788999999999999999999999998888888877655 55566899999999999999
Q ss_pred HHHHhcCCchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCC
Q 001349 494 ESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKM 573 (1094)
Q Consensus 494 ~l~~~~~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~~ 573 (1094)
.++.+....-...++.+|.+|..- .++..++-+.|.++. |..+|+ .+.++..+-.+|.||-..++.+.+
T Consensus 338 kLl~s~~~~l~~~aLrlL~NLSfd------~~~R~~mV~~GlIPk---Lv~LL~--d~~~~~val~iLy~LS~dd~~r~~ 406 (708)
T PF05804_consen 338 KLLPSENEDLVNVALRLLFNLSFD------PELRSQMVSLGLIPK---LVELLK--DPNFREVALKILYNLSMDDEARSM 406 (708)
T ss_pred HHhcCCCHHHHHHHHHHHHHhCcC------HHHHHHHHHCCCcHH---HHHHhC--CCchHHHHHHHHHHhccCHhhHHH
Confidence 999998877777889999999544 556678899999998 666775 467778899999999998888888
Q ss_pred CccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhcccccccCChhhHHHHHHHHhCCCccccccc------cccccccccC
Q 001349 574 SIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQGRFTTSGKSLTRAMLLKRAGVGKSYKNLT------RTEQIGNICG 647 (1094)
Q Consensus 574 ~~~reea~~~~~~~l~~~~~~~~~~~~~~~~~~l~g~~s~~g~~~~~~~l~~~~g~~~~~~~~~------~~~~~~~~~~ 647 (1094)
-.|. ++++.|+..|..+....++....-.+.||+-. ..+++ -+.+-.|+.......+ -...|||++.
T Consensus 407 f~~T-dcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~-----~rnaq-lm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~ 479 (708)
T PF05804_consen 407 FAYT-DCIPQLMQMLLENSEEEVQLELIALLINLALN-----KRNAQ-LMCEGNGLQSLMKRALKTRDPLLLKLIRNISQ 479 (708)
T ss_pred Hhhc-chHHHHHHHHHhCCCccccHHHHHHHHHHhcC-----HHHHH-HHHhcCcHHHHHHHHHhcccHHHHHHHHHHHh
Confidence 8877 59999999888877777676666666666522 22332 2333344443222111 1345677764
Q ss_pred CCCCchHHhhhhhHHHHhhheeeeccC
Q 001349 648 EDDDTSEEEKAADDWERKMALVLVSHD 674 (1094)
Q Consensus 648 ~~~~~~~~~~~~~~~~~k~a~~l~~~~ 674 (1094)
.. ...+. .-.+|...++..+...+
T Consensus 480 h~--~~~k~-~f~~~i~~L~~~v~~~~ 503 (708)
T PF05804_consen 480 HD--GPLKE-LFVDFIGDLAKIVSSGD 503 (708)
T ss_pred cC--chHHH-HHHHHHHHHHHHhhcCC
Confidence 22 22222 34568888777654433
No 344
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=2.7e-06 Score=96.40 Aligned_cols=74 Identities=20% Similarity=0.436 Sum_probs=60.4
Q ss_pred CCCCCCCceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCC----CCChhHHHHHHHHHHHHh
Q 001349 156 GKHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTK----LPKTNYVLKRLIASWQEQ 230 (1094)
Q Consensus 156 ~~~~~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~----~~~pN~~l~~~i~~~~~~ 230 (1094)
.+..+..+|.|-||..++.+||+++|||+||..||.+.++. ...||.||..+.... ...+|+.+..+|.+++..
T Consensus 77 ~~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~-~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~ 154 (398)
T KOG4159|consen 77 GPEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ-ETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG 154 (398)
T ss_pred cCccccchhhhhhhHhhcCCCccccccccccHHHHHHHhcc-CCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 44566789999999999999999999999999999998885 557999998876422 221477888999988764
No 345
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.03 E-value=2.5e-05 Score=80.91 Aligned_cols=143 Identities=17% Similarity=0.224 Sum_probs=92.7
Q ss_pred EeCCEEEEEEcCCeEEEEECCCCceeEEeccceeec-CCCCCeEEEEEeCCccEEEEE------ECCCCEEEEEECCCCe
Q 001349 943 LVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLL-GKANPVHALQVHNGLVYTAST------SLDGAAVKMWSTSNYN 1015 (1094)
Q Consensus 943 ~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~-~h~~~V~sl~fs~~~~~las~------s~Dg~~I~iwd~~~~~ 1015 (1094)
..++.+++++.||.+.+++.+.-.... .+.. .|.+ -.+.++...+.++.++ ..| ..+.|+++..+
T Consensus 99 ~~~t~V~~~~~dg~~~v~s~~~~~~~~-----~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d--~~~a~~~~p~~ 170 (319)
T KOG4714|consen 99 MTDNRVCIGYADGSLAVFSTDKDLALM-----SRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQD--NFYANTLDPIK 170 (319)
T ss_pred ccCCceEecCCCceEEEEechHHHhhh-----hhccccccc-ccccceeecccEEecCCcceEeecc--ceeeecccccc
Confidence 334568999999999999877521110 1111 1111 1112222223333322 112 45666665322
Q ss_pred EEE-EecCCCCEEEEEEeCC---EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcC-CCCEEEEEeCCCcEEE
Q 001349 1016 MVG-SLPTLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDD-NEEFLVIGTSDGRIQA 1090 (1094)
Q Consensus 1016 ~~~-~~~~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Sp-dg~~L~sgs~DG~I~i 1090 (1094)
... .......|.+++-+|. .+++|+.||.+.+||.+.......+...|...|+.+-|+| ++..|+++++||.+.-
T Consensus 171 t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~ 250 (319)
T KOG4714|consen 171 TLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWH 250 (319)
T ss_pred cccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEE
Confidence 211 1112345888998886 7889999999999999988766666678999999999999 4578999999999999
Q ss_pred EeC
Q 001349 1091 WGL 1093 (1094)
Q Consensus 1091 Wdl 1093 (1094)
||-
T Consensus 251 wda 253 (319)
T KOG4714|consen 251 WDA 253 (319)
T ss_pred EcC
Confidence 985
No 346
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=98.01 E-value=2.8e-06 Score=91.11 Aligned_cols=65 Identities=17% Similarity=0.347 Sum_probs=54.0
Q ss_pred CceeccCccccccCcEEc-CCcccccHHhHHHHHHhCCCCCCCCCcCCCCCC---CCChhHHHHHHHHHH
Q 001349 162 KDFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLSSTK---LPKTNYVLKRLIASW 227 (1094)
Q Consensus 162 ~~~~CpIc~~~~~dPv~~-~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~---~~~pN~~l~~~i~~~ 227 (1094)
...+|++|..+|.||-++ .|=||||+.||.+++.. ...||.|+..+.... -++++..|+.++.+.
T Consensus 14 ~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL 82 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL 82 (331)
T ss_pred cceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHHH
Confidence 378999999999999885 89999999999999998 668999998776553 223677888777664
No 347
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.00 E-value=7.2e-05 Score=89.36 Aligned_cols=143 Identities=10% Similarity=0.205 Sum_probs=107.1
Q ss_pred EEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCC--------CEEEEEECC
Q 001349 941 LALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG--------AAVKMWSTS 1012 (1094)
Q Consensus 941 l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg--------~~I~iwd~~ 1012 (1094)
+..++..+++|...|+|.+-|.++-+.+ +++..|++.|..+..+ |..+++++... ..|+|||++
T Consensus 183 mR~Nnr~lf~G~t~G~V~LrD~~s~~~i------ht~~aHs~siSDfDv~--GNlLitCG~S~R~~~l~~D~FvkVYDLR 254 (1118)
T KOG1275|consen 183 MRYNNRNLFCGDTRGTVFLRDPNSFETI------HTFDAHSGSISDFDVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLR 254 (1118)
T ss_pred EEecCcEEEeecccceEEeecCCcCcee------eeeeccccceeeeecc--CCeEEEeecccccccccccchhhhhhhh
Confidence 3444456899999999999999998887 6788899998877665 44566665433 368999999
Q ss_pred CCeEEEEecCCCCEEEEEEeCC---EEEEEEcCCeEEEEECCC---Cc-EEEEecccCCcceEEEEEcCCCCEEEEEeCC
Q 001349 1013 NYNMVGSLPTLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKR---QI-RIETLQTGTSGKVQCMALDDNEEFLVIGTSD 1085 (1094)
Q Consensus 1013 ~~~~~~~~~~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t---~~-~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~D 1085 (1094)
+.+.+..+.-.....-+.|.|. .+++.+..|...+-|..+ .. -+..+ ......+..+++|++|+.|+.|..+
T Consensus 255 mmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v-~p~~s~i~~fDiSsn~~alafgd~~ 333 (1118)
T KOG1275|consen 255 MMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMV-NPNGSGISAFDISSNGDALAFGDHE 333 (1118)
T ss_pred hhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEE-ccCCCcceeEEecCCCceEEEeccc
Confidence 8877766664444456677776 688899999999999432 21 11222 2234459999999999999999999
Q ss_pred CcEEEEe
Q 001349 1086 GRIQAWG 1092 (1094)
Q Consensus 1086 G~I~iWd 1092 (1094)
|.|.+|.
T Consensus 334 g~v~~wa 340 (1118)
T KOG1275|consen 334 GHVNLWA 340 (1118)
T ss_pred CcEeeec
Confidence 9999994
No 348
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.00 E-value=0.00058 Score=80.44 Aligned_cols=239 Identities=11% Similarity=0.030 Sum_probs=147.3
Q ss_pred CCCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCC------------CEEEEEeCCCcE
Q 001349 812 ENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSG------------EMLYSGSLDKTA 879 (1094)
Q Consensus 812 h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg------------~~LaSgs~DgtI 879 (1094)
|...-.++.|+|.-|+.-+....|.|-|..+- +.++.+.-|...|+.|.|.|-. -.|+++...|.|
T Consensus 14 ~~sN~~A~Dw~~~GLiAygshslV~VVDs~s~--q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI 91 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSGLIAYGSHSLVSVVDSRSL--QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI 91 (1062)
T ss_pred CcccccccccCccceEEEecCceEEEEehhhh--hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence 33446788999984444444567888898877 7899999999999999997621 257777788999
Q ss_pred EEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEE
Q 001349 880 RVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQE 959 (1094)
Q Consensus 880 ~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~i 959 (1094)
.+||...+.. ......+.+++..+.|-+ .-++++ +.+++-....+|.+
T Consensus 92 il~d~~~~s~-~~~l~~~~~~~qdl~W~~----~rd~Sr---------------------------d~LlaIh~ss~lvL 139 (1062)
T KOG1912|consen 92 ILVDFVLASV-INWLSHSNDSVQDLCWVP----ARDDSR---------------------------DVLLAIHGSSTLVL 139 (1062)
T ss_pred EEEEehhhhh-hhhhcCCCcchhheeeee----ccCcch---------------------------heeEEecCCcEEEE
Confidence 9999988642 222333455565555211 011111 13566667788999
Q ss_pred EECCCCceeEEeccceeecCCCCCeEEEEEeC-CccEEEEEECCCCEEEEEECCC-------CeEEEEec-CCC------
Q 001349 960 IDLATGTFATIQTGHRKLLGKANPVHALQVHN-GLVYTASTSLDGAAVKMWSTSN-------YNMVGSLP-TLS------ 1024 (1094)
Q Consensus 960 wDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~-~~~~las~s~Dg~~I~iwd~~~-------~~~~~~~~-~~~------ 1024 (1094)
|+..+|+....+.. + .....++.++| |...+...+..| .+-+-+.-. ++..+.-. |.+
T Consensus 140 wntdtG~k~Wk~~y-----s-~~iLs~f~~DPfd~rh~~~l~s~g-~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~ler 212 (1062)
T KOG1912|consen 140 WNTDTGEKFWKYDY-----S-HEILSCFRVDPFDSRHFCVLGSKG-FVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLER 212 (1062)
T ss_pred EEccCCceeecccc-----C-CcceeeeeeCCCCcceEEEEccCc-eEEEEeccCCCCCCCCceeEEEecCccchhhhhh
Confidence 99999987643221 1 23455677765 222222223333 554444321 12111111 111
Q ss_pred ------C-------------EEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCC--CEEEE
Q 001349 1025 ------E-------------VRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNE--EFLVI 1081 (1094)
Q Consensus 1025 ------~-------------v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg--~~L~s 1081 (1094)
. ...++|+|. .++.......+.|+|++-..++.... -..+.+.-+.|-|++ ..|++
T Consensus 213 e~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvp-ier~~akfv~vlP~~~rd~Lfc 291 (1062)
T KOG1912|consen 213 ETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVP-IERGGAKFVDVLPDPRRDALFC 291 (1062)
T ss_pred hhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEE-eccCCcceeEeccCCCcceEEE
Confidence 0 123556776 34445566789999999888887773 344445556666665 67999
Q ss_pred EeCCCcEEEEe
Q 001349 1082 GTSDGRIQAWG 1092 (1094)
Q Consensus 1082 gs~DG~I~iWd 1092 (1094)
+-.||.+.+|-
T Consensus 292 lH~nG~ltirv 302 (1062)
T KOG1912|consen 292 LHSNGRLTIRV 302 (1062)
T ss_pred EecCCeEEEEE
Confidence 99999999994
No 349
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.99 E-value=4.7e-06 Score=71.90 Aligned_cols=39 Identities=28% Similarity=0.791 Sum_probs=32.1
Q ss_pred ccCccccccCc------------E-EcCCcccccHHhHHHHHHhCCCCCCCCC
Q 001349 166 CPITTHIFDDP------------V-TLETGQTYERRAIQEWIERGNSSCPITR 205 (1094)
Q Consensus 166 CpIc~~~~~dP------------v-~~~cGhtfc~~ci~~~~~~~~~~CP~c~ 205 (1094)
|+||++-|.+| + ..+|||.|-..||.+|+.. +.+||+||
T Consensus 22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR 73 (73)
T PF12678_consen 22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR 73 (73)
T ss_dssp ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence 99999999433 3 3589999999999999987 44899997
No 350
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=0.0012 Score=79.02 Aligned_cols=213 Identities=15% Similarity=0.223 Sum_probs=130.9
Q ss_pred cEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccCCC-eEEEEEecCCCEEEEEeCCCc-----EEEEECCCCc
Q 001349 815 KVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKA-VTGLAILQSGEMLYSGSLDKT-----ARVWSIGNEE 888 (1094)
Q Consensus 815 ~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~-V~sv~fspdg~~LaSgs~Dgt-----I~vWdi~~~~ 888 (1094)
.|+|+.-+...++.|+.+|.|.+.+-.- +.++.++.+... |..+-...+..+|++.+.|+. ++|||++.-+
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~---~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSSF---QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecccc---eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 6666666666999999999988776432 456788888877 555544444578888887754 8999987531
Q ss_pred ----eEEE---EecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC--CEEEEEEcCCeEEE
Q 001349 889 ----IHCV---QVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ--GKVYCGCQDGAIQE 959 (1094)
Q Consensus 889 ----~~~~---~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~--~~l~sgs~Dg~I~i 959 (1094)
..++ ...++..+ .....+.+++++. ..+++|-.||.|..
T Consensus 104 ~n~sP~c~~~~ri~~~~np--------------------------------~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~ 151 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNP--------------------------------TNPSPASSLAVSEDLKTIVCGFTNGLVIC 151 (933)
T ss_pred CCCCcceeeeeeeeccCCC--------------------------------CCCCcceEEEEEccccEEEEEecCcEEEE
Confidence 1222 11110000 0122344555543 35888999999888
Q ss_pred EECCCCceeEEecc-ceeecCCCCCeEEEEEeCCccE--EEEEECCCCEEEEEECCCCeE-EEEec-CCCCEEEEEEeCC
Q 001349 960 IDLATGTFATIQTG-HRKLLGKANPVHALQVHNGLVY--TASTSLDGAAVKMWSTSNYNM-VGSLP-TLSEVRAMVVSSE 1034 (1094)
Q Consensus 960 wDl~~~~~~~~~~~-~~~~~~h~~~V~sl~fs~~~~~--las~s~Dg~~I~iwd~~~~~~-~~~~~-~~~~v~~l~~spd 1034 (1094)
+.-. ....... ..-...-..+|+.+.+..++.. +++. . ..|.+|.+....+ ...+. ++....|..+++.
T Consensus 152 ~~GD---i~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~T--t-~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~ 225 (933)
T KOG2114|consen 152 YKGD---ILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVAT--T-EQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDG 225 (933)
T ss_pred EcCc---chhccccceeeeccCCCCceeeEEecCCceeEEEEe--c-ceeEEEEecCCCcceeeeccCCccceeeecCCC
Confidence 8421 1110000 0111223479999999766554 3333 1 3799999985442 33344 5677888888876
Q ss_pred -E-EEEEEcCCeEEEEECCCCcEEEEecccCCcceEE
Q 001349 1035 -L-VYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQC 1069 (1094)
Q Consensus 1035 -~-l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~ 1069 (1094)
. +++++ +..+.+||....++...|..||......
T Consensus 226 t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk~~~~ 261 (933)
T KOG2114|consen 226 TYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKKEMLV 261 (933)
T ss_pred CccEEEec-CceEEEEcCCCcceeeeecCCCeEEEEE
Confidence 4 44444 4579999999888888885577654443
No 351
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=6.7e-06 Score=84.49 Aligned_cols=78 Identities=31% Similarity=0.450 Sum_probs=71.2
Q ss_pred CCCCCCCceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHHHHhCCCC
Q 001349 156 GKHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPGG 234 (1094)
Q Consensus 156 ~~~~~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~~~~~~~ 234 (1094)
.+.++|+.+.|.|..++|++||++|.|-||.|.-|.+++..-...-|++|.+++..+++ ||+.|+..|..|...+.+.
T Consensus 204 k~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~i-pN~alkevIa~fl~~n~w~ 281 (284)
T KOG4642|consen 204 KKREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLI-PNLALKEVIAAFLKENEWA 281 (284)
T ss_pred ccccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhc-cchHHHHHHHHHHHhcccc
Confidence 45678889999999999999999999999999999999987555799999999999998 9999999999999987653
No 352
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.94 E-value=2.8e-05 Score=83.46 Aligned_cols=149 Identities=17% Similarity=0.217 Sum_probs=103.7
Q ss_pred EEEeCCeEEEEcCCCCceEEEEe--CCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeC-CccEEEE
Q 001349 922 VHLRNGKTKLLNSSKYPKCLALV--QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN-GLVYTAS 998 (1094)
Q Consensus 922 ~~~~~g~i~l~~~~~~v~~l~~s--~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~-~~~~las 998 (1094)
+....|.-.-+.....|.++.|. ++.++.|+.+|.|..+|++.+..-.... ....-|...|+++..-. +..++.+
T Consensus 239 ~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~--a~rlyh~Ssvtslq~Lq~s~q~Lma 316 (425)
T KOG2695|consen 239 TNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWC--AQRLYHDSSVTSLQILQFSQQKLMA 316 (425)
T ss_pred EEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcc--eEEEEcCcchhhhhhhccccceEee
Confidence 33344555556666677777775 4678999999999999999763221111 22345788999998865 6777777
Q ss_pred EECCCCEEEEEECCCCeE---EEEecCCCC-E--EEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCC---cce
Q 001349 999 TSLDGAAVKMWSTSNYNM---VGSLPTLSE-V--RAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTS---GKV 1067 (1094)
Q Consensus 999 ~s~Dg~~I~iwd~~~~~~---~~~~~~~~~-v--~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~---~~I 1067 (1094)
.+.+| +|++||.+.-++ ++++.++.+ - .-+-+.+. .+++++.|...|||.+++|+++.+++.... ..+
T Consensus 317 S~M~g-kikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~ 395 (425)
T KOG2695|consen 317 SDMTG-KIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDI 395 (425)
T ss_pred ccCcC-ceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccc
Confidence 78887 999999997666 777764321 1 12223333 788899999999999999999998854322 246
Q ss_pred EEEEEc
Q 001349 1068 QCMALD 1073 (1094)
Q Consensus 1068 ~~l~~S 1073 (1094)
.+++|+
T Consensus 396 ~sv~~~ 401 (425)
T KOG2695|consen 396 PSVAFD 401 (425)
T ss_pred cceehh
Confidence 667764
No 353
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.91 E-value=0.002 Score=75.05 Aligned_cols=85 Identities=21% Similarity=0.408 Sum_probs=67.2
Q ss_pred EEEECCCCe----EEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEE
Q 001349 1007 KMWSTSNYN----MVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLV 1080 (1094)
Q Consensus 1007 ~iwd~~~~~----~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~ 1080 (1094)
.+|+...++ .+.+++..+.+.+.+++|+ .++.|+.||.|.+||...+..... .+.-.++.++|+|+|.+++
T Consensus 239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~---ka~~~P~~iaWHp~gai~~ 315 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA---KAEFIPTLIAWHPDGAIFV 315 (545)
T ss_pred EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee---eecccceEEEEcCCCcEEE
Confidence 455554433 2345567889999999998 899999999999999987743322 2334679999999999999
Q ss_pred EEeCCCcEEEEeCC
Q 001349 1081 IGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1081 sgs~DG~I~iWdls 1094 (1094)
+|+..|.+.+||++
T Consensus 316 V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 316 VGSEQGELQCFDMA 329 (545)
T ss_pred EEcCCceEEEEEee
Confidence 99999999999974
No 354
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.90 E-value=1.1e-05 Score=83.95 Aligned_cols=67 Identities=16% Similarity=0.301 Sum_probs=55.5
Q ss_pred eeccCccccccCcEEc-CCcccccHHhHHHHHHhCCCCCCCCCcC-CCCCCCCChhHHHHHHHHHHHHhC
Q 001349 164 FVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERGNSSCPITRQK-LSSTKLPKTNYVLKRLIASWQEQN 231 (1094)
Q Consensus 164 ~~CpIc~~~~~dPv~~-~cGhtfc~~ci~~~~~~~~~~CP~c~~~-~~~~~~~~pN~~l~~~i~~~~~~~ 231 (1094)
+.||.|..++++|+-+ +|||+||..||+..+-.....||.|... +--..+. |+...+.-|+++.+.+
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~-pD~dk~~EvE~~lkkq 343 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLT-PDIDKKLEVEKALKKQ 343 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccC-ccHHHHHHHHHHHHHH
Confidence 9999999999999988 8999999999998766656789999864 3344565 8888888888877643
No 355
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=0.00035 Score=81.25 Aligned_cols=232 Identities=13% Similarity=0.132 Sum_probs=155.9
Q ss_pred HHHHhhhccccchHhHHHHHHHHHHHHHhc-cchHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccchh
Q 001349 271 HAITSLCMSEILNESEMAVLQIERCWLEAS-MELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVI 349 (1094)
Q Consensus 271 ~~i~~L~~s~~l~~~e~a~~~i~~~~~~~~-~~~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~ 349 (1094)
..|..|+..+...-+++|+=.++.++.... ....+..+++-|.++. |+.|.+..|.+.|+-+|.|+. .+-..+
T Consensus 113 ~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~-----Ll~s~~~~v~eQavWALgNIa-gds~~~ 186 (514)
T KOG0166|consen 113 RLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQ-----LLSSPSADVREQAVWALGNIA-GDSPDC 186 (514)
T ss_pred HHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHH-----HhcCCcHHHHHHHHHHHhccc-cCChHH
Confidence 344555544333336777777777776544 3366666666666444 666899999999999999994 444456
Q ss_pred hhhccCCCcHHHHHHHHhcC-----hHHHHHHHHhc----CCChHHHHHhhhhHHHHHHHHhccccccccccCchhhHHH
Q 001349 350 HTLTRVESDVERIVALFKKG-----LLEAVVLIDLL----RPSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVL 420 (1094)
Q Consensus 350 ~~i~~~~~~~~~L~~lLk~g-----~~~Aa~~l~~L----~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~ 420 (1094)
+.++-..+++++|+.++... .-.|+.+|.+| +|.+.--.....+|.|+.+|...+++-. .+|+-+
T Consensus 187 Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl------~Da~WA 260 (514)
T KOG0166|consen 187 RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVL------TDACWA 260 (514)
T ss_pred HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHH------HHHHHH
Confidence 66666788999999998665 45799999999 2444333333445999999888654321 233322
Q ss_pred HHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHH-hc
Q 001349 421 LLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFM-AA 499 (1094)
Q Consensus 421 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~-~~ 499 (1094)
+.-|.. .-++.--.++..|++|.|++.|+..+..-+..|-..+-+...-++.-...+-+.+.++.|..|+. +-
T Consensus 261 -lsyLsd-----g~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~ 334 (514)
T KOG0166|consen 261 -LSYLTD-----GSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSP 334 (514)
T ss_pred -HHHHhc-----CChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCc
Confidence 333322 22455667788899999999998777666666655555655556666777788889999998887 44
Q ss_pred CCchhHHHHHHHHHHHhcccc
Q 001349 500 SDGERFEIVCFLSELVKLNRR 520 (1094)
Q Consensus 500 ~~~~~~~~~~~l~el~~~~r~ 520 (1094)
.+.-|..|.=+++.+..++..
T Consensus 335 ~~~ikkEAcW~iSNItAG~~~ 355 (514)
T KOG0166|consen 335 KESIKKEACWTISNITAGNQE 355 (514)
T ss_pred chhHHHHHHHHHHHhhcCCHH
Confidence 555666777788888776543
No 356
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.88 E-value=0.0016 Score=76.77 Aligned_cols=272 Identities=10% Similarity=0.087 Sum_probs=149.0
Q ss_pred ccccccccccCcEEEEeeCCCCeEEEeCCcc---eeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEE
Q 001349 775 LRKYSPLAFEMVKVLSNGHDSSADFWNHREL---VHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQ 849 (1094)
Q Consensus 775 ~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~~---~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~ 849 (1094)
.+++..+...+.+++.|+.-|.+.+|+-... .....+..+.+..+..|++ ++|.|+..|.|.|+-+..+......
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~ 114 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLD 114 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcce
Confidence 4557778888999999999999999987622 2222334455566666764 8888899999999977654221111
Q ss_pred Ee----cccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc---eEEEEecccCccceeeeecCceEEEeeCCCeEEE
Q 001349 850 QI----REHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE---IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKV 922 (1094)
Q Consensus 850 ~l----~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~---~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~ 922 (1094)
.+ +.|...|+++.|++|+..+++|...|+|..-.+++.. ..........+.|-.+......+-++.--+.+..
T Consensus 115 ~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~r~~Lc 194 (726)
T KOG3621|consen 115 YVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLVSTLTRCILC 194 (726)
T ss_pred eeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceehHhhhhhhhee
Confidence 11 2478899999999999999999999999988887721 1122222334455555433332222222222333
Q ss_pred EEeCCeEEEEcCC--CC--ceEEEEeCC-------EEEEEEcCCeEEEEECCC-CceeEEecc-------ceeecC----
Q 001349 923 HLRNGKTKLLNSS--KY--PKCLALVQG-------KVYCGCQDGAIQEIDLAT-GTFATIQTG-------HRKLLG---- 979 (1094)
Q Consensus 923 ~~~~g~i~l~~~~--~~--v~~l~~s~~-------~l~sgs~Dg~I~iwDl~~-~~~~~~~~~-------~~~~~~---- 979 (1094)
....++++-.... +. -..-.|-+| .|+++--. .++|...- |..+.+..- ...+..
T Consensus 195 ~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG--~RlWead~~G~V~~Thqfk~ala~~p~p~i~~~s~ 272 (726)
T KOG3621|consen 195 QTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG--LRLWEADFAGEVIKTHQFKDALARPPAPEIPIRSL 272 (726)
T ss_pred ecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCC--CceEEeecceeEEEeeehhhhhccCCCCcccCCCc
Confidence 3333332211111 11 122223222 34444333 35554432 332222100 000000
Q ss_pred -------------CCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCCEEEEEEcCCeEE
Q 001349 980 -------------KANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSELVYLGCKGGTVE 1046 (1094)
Q Consensus 980 -------------h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd~l~sgs~dg~I~ 1046 (1094)
|-+-..+...+.+ .+.+.+.- -|+|+|.++...+........|..++.+.+-|++-..||.++
T Consensus 273 esp~~~~~~~~~q~ls~~k~~~l~~~--~vLa~te~--Giyv~d~~~~~v~l~se~~~DI~dVs~~~neiFvL~~d~~l~ 348 (726)
T KOG3621|consen 273 ESPNQRSLPSGTQHLSLSKSSTLHSD--RVLAWTEV--GIYVFDSNNSQVYLWSEGGHDILDVSHCGNEIFVLNLDRGLK 348 (726)
T ss_pred CCccccCCCCCccccccceeEEeecc--eEEEeecc--eEEEEEeccceEEEeecCCCceeEEeecCceEEEEecCCcee
Confidence 1111122222222 22333323 388888887766665556777888888888666666666666
Q ss_pred EEECCC
Q 001349 1047 IWDQKR 1052 (1094)
Q Consensus 1047 vwd~~t 1052 (1094)
+..+.+
T Consensus 349 ~~sv~s 354 (726)
T KOG3621|consen 349 VESVAS 354 (726)
T ss_pred EEEeeh
Confidence 666544
No 357
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.87 E-value=0.00022 Score=85.45 Aligned_cols=185 Identities=15% Similarity=0.222 Sum_probs=127.8
Q ss_pred cCcEEEEeeCCCCeEEEeCCcceeec--ccCCCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEE
Q 001349 784 EMVKVLSNGHDSSADFWNHRELVHVD--SSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGL 861 (1094)
Q Consensus 784 d~~~l~s~s~dg~I~vWd~~~~~~~~--~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv 861 (1094)
.+..++.|+....+..+|..+..... .-..+.|+=+..+...+++|...|+|.+-|..+. +.++++..|++.|..+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~--~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSF--ETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcC--ceeeeeeccccceeee
Confidence 57788889998888888987433332 2234458888888889999999999999999988 8999999999999876
Q ss_pred EEecCCCEEEEEeC---------CCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEE
Q 001349 862 AILQSGEMLYSGSL---------DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLL 932 (1094)
Q Consensus 862 ~fspdg~~LaSgs~---------DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~ 932 (1094)
+. .|+.|+|+|. |.-|+|||++.-. .+.... +...+..+.|.|.=
T Consensus 224 Dv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmr--al~PI~-------~~~~P~flrf~Psl--------------- 277 (1118)
T KOG1275|consen 224 DV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMR--ALSPIQ-------FPYGPQFLRFHPSL--------------- 277 (1118)
T ss_pred ec--cCCeEEEeecccccccccccchhhhhhhhhhh--ccCCcc-------cccCchhhhhcccc---------------
Confidence 65 6899999986 5568999998742 111110 11111111233321
Q ss_pred cCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEEC
Q 001349 933 NSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWST 1011 (1094)
Q Consensus 933 ~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~ 1011 (1094)
...+++.+..|..++-|..+-..... +..-+......+..+++++++..++.+..+| .|.+|--
T Consensus 278 ------------~t~~~V~S~sGq~q~vd~~~lsNP~~--~~~~v~p~~s~i~~fDiSsn~~alafgd~~g-~v~~wa~ 341 (1118)
T KOG1275|consen 278 ------------TTRLAVTSQSGQFQFVDTATLSNPPA--GVKMVNPNGSGISAFDISSNGDALAFGDHEG-HVNLWAD 341 (1118)
T ss_pred ------------cceEEEEecccceeeccccccCCCcc--ceeEEccCCCcceeEEecCCCceEEEecccC-cEeeecC
Confidence 12578888889988888433211100 0011222334589999999999999999987 9999973
No 358
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=0.0032 Score=75.58 Aligned_cols=216 Identities=13% Similarity=0.074 Sum_probs=137.0
Q ss_pred cccccccCcEEEEeeCCCCeEEEeCCc-ceeecccCCCc-EEEEEEeCC--EEEEEECCC-----eEEEEecCCC---c-
Q 001349 778 YSPLAFEMVKVLSNGHDSSADFWNHRE-LVHVDSSENGK-VLSIACFRD--KIFSGHSDG-----TIKVWTGRGS---I- 844 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg~I~vWd~~~-~~~~~~~h~~~-V~~l~fspd--~LaSgs~Dg-----~I~vWd~~t~---~- 844 (1094)
.+.+++.+..++.|+.+|.|.+.+-.- ..+-+..+... |..+-...+ +|++.+.|+ .++|||++.. .
T Consensus 28 isc~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 28 ISCCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred eeEEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 455666788999999999988887763 33666667666 444433343 888877765 4999998632 1
Q ss_pred ceeEE--Eecc-----cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC---CceEEEEecccCccceeeeecCceEEEe
Q 001349 845 LHLIQ--QIRE-----HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGN---EEIHCVQVHDIKDQIQNLAVSNSILCFI 914 (1094)
Q Consensus 845 ~~~~~--~l~~-----H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~---~~~~~~~~~~~~~~V~~v~~~~~~~~fs 914 (1094)
..++. .+.+ ...++.+++++.+-+.+|.|-.||.|..+.-+- ...+....+..+++|+.+. +.
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~-------~~ 180 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLA-------LR 180 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeE-------Ee
Confidence 34441 2222 245788999999999999999999998875321 1123333344556666665 44
Q ss_pred eCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCcc
Q 001349 915 PQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLV 994 (1094)
Q Consensus 915 pdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~ 994 (1094)
.+++. ++....-..|..|.+....+.. .....|+.+++|..+++...
T Consensus 181 ~d~~s----------------------------~lFv~Tt~~V~~y~l~gr~p~~-----~~ld~~G~~lnCss~~~~t~ 227 (933)
T KOG2114|consen 181 SDGKS----------------------------VLFVATTEQVMLYSLSGRTPSL-----KVLDNNGISLNCSSFSDGTY 227 (933)
T ss_pred cCCce----------------------------eEEEEecceeEEEEecCCCcce-----eeeccCCccceeeecCCCCc
Confidence 44432 1222334568888887444221 34566788899999987766
Q ss_pred EEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCCE
Q 001349 995 YTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSEL 1035 (1094)
Q Consensus 995 ~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd~ 1035 (1094)
-+++++. ..+.+||.....+...|.-+..-....++.++
T Consensus 228 qfIca~~--e~l~fY~sd~~~~cfaf~~g~kk~~~~~~~g~ 266 (933)
T KOG2114|consen 228 QFICAGS--EFLYFYDSDGRGPCFAFEVGEKKEMLVFSFGL 266 (933)
T ss_pred cEEEecC--ceEEEEcCCCcceeeeecCCCeEEEEEEecCE
Confidence 3444443 37999999877777777744443444444443
No 359
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.80 E-value=0.013 Score=65.05 Aligned_cols=223 Identities=15% Similarity=0.233 Sum_probs=134.0
Q ss_pred CeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeC----------CCcEEEEECCCCceEEEEecccCccce
Q 001349 833 GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSL----------DKTARVWSIGNEEIHCVQVHDIKDQIQ 902 (1094)
Q Consensus 833 g~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~----------DgtI~vWdi~~~~~~~~~~~~~~~~V~ 902 (1094)
+.+.|.|..++ +.+..+.. +-.-.+..+|||+.+++++. .-.|.+||..+-....-...+.+....
T Consensus 17 ~rv~viD~d~~--k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~ 92 (342)
T PF06433_consen 17 SRVYVIDADSG--KLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ 92 (342)
T ss_dssp EEEEEEETTTT--EEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--
T ss_pred ceEEEEECCCC--cEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe
Confidence 47899999988 56665542 33344678999999987643 336899999986533322232221222
Q ss_pred eeeecCceEEEeeCCCeEEEEEeC--CeEEEEcCCCC--------ceEEEE---eCCEEEEEEcCCeEEEEECC-CCcee
Q 001349 903 NLAVSNSILCFIPQGAGIKVHLRN--GKTKLLNSSKY--------PKCLAL---VQGKVYCGCQDGAIQEIDLA-TGTFA 968 (1094)
Q Consensus 903 ~v~~~~~~~~fspdg~~l~~~~~~--g~i~l~~~~~~--------v~~l~~---s~~~l~sgs~Dg~I~iwDl~-~~~~~ 968 (1094)
.+ .......++.||+++.+.+.. ..+.+.|.... .-|... .+..+.+-|.||++....+. .|+..
T Consensus 93 ~~-~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~ 171 (342)
T PF06433_consen 93 VV-PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEA 171 (342)
T ss_dssp BS---GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEE
T ss_pred ec-ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEe
Confidence 21 234556799999999988877 45667765322 112222 24678899999999988887 44443
Q ss_pred EEec--------------------cceeecCCCCCeEEEEEeCCc----------------------------------c
Q 001349 969 TIQT--------------------GHRKLLGKANPVHALQVHNGL----------------------------------V 994 (1094)
Q Consensus 969 ~~~~--------------------~~~~~~~h~~~V~sl~fs~~~----------------------------------~ 994 (1094)
.... +...+....+.|..+.++.+. .
T Consensus 172 ~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~r 251 (342)
T PF06433_consen 172 QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGR 251 (342)
T ss_dssp EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTE
T ss_pred EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCe
Confidence 2110 001112233344444443222 1
Q ss_pred EEEEEE--CC------CCEEEEEECCCCeEEEEecCCCCEEEEEEeCC---EEEEEE-cCCeEEEEECCCCcEEEEec
Q 001349 995 YTASTS--LD------GAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE---LVYLGC-KGGTVEIWDQKRQIRIETLQ 1060 (1094)
Q Consensus 995 ~las~s--~D------g~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd---~l~sgs-~dg~I~vwd~~t~~~~~~l~ 1060 (1094)
+.+.-. .+ +..|-+||+.+++.+..+.-...+.++.++.+ +|++.+ .++.+.|||..+|+.+.++.
T Consensus 252 lyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 252 LYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 111110 00 12788889999999999986667889999987 666554 57999999999999999885
No 360
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.79 E-value=0.00078 Score=79.78 Aligned_cols=277 Identities=14% Similarity=0.184 Sum_probs=149.8
Q ss_pred CCCeEEEeCC-cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEE
Q 001349 794 DSSADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEML 870 (1094)
Q Consensus 794 dg~I~vWd~~-~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~L 870 (1094)
.|+|.||--. ++. ....-.-.+++++|+|. .|++|-.-|.+.+|...+. +.-.....|..+|..+.||++|..+
T Consensus 40 ~GSVtIfadtGEPq-r~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~--e~htv~~th~a~i~~l~wS~~G~~l 116 (1416)
T KOG3617|consen 40 GGSVTIFADTGEPQ-RDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTT--ETHTVVETHPAPIQGLDWSHDGTVL 116 (1416)
T ss_pred CceEEEEecCCCCC-cccccceehhhhccChHHHHHhhccccceeEEEecCCc--eeeeeccCCCCCceeEEecCCCCeE
Confidence 3778887433 211 11112234577999997 8899999999999999887 4444456799999999999999999
Q ss_pred EEEeCCCcEEEEECCC-CceEE--EEecccCccceeeeecCceEEEeeCCCe------EEEEEeCCeE---EEEcCCCCc
Q 001349 871 YSGSLDKTARVWSIGN-EEIHC--VQVHDIKDQIQNLAVSNSILCFIPQGAG------IKVHLRNGKT---KLLNSSKYP 938 (1094)
Q Consensus 871 aSgs~DgtI~vWdi~~-~~~~~--~~~~~~~~~V~~v~~~~~~~~fspdg~~------l~~~~~~g~i---~l~~~~~~v 938 (1094)
+|+..-|.|.+|..+. |+... +..++....+.-..+. .++++.. .++.+.+..+ .-|.....-
T Consensus 117 ~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfR-----L~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~ 191 (1416)
T KOG3617|consen 117 MTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFR-----LSYDREEKFKLAKAAVTGDESALDEPFNWKESLAE 191 (1416)
T ss_pred EEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEe-----cCCChHHhhhhhhhhccCchhhhcccccCccchhh
Confidence 9999999999998763 22111 1122223333322211 2344221 1222222111 122222222
Q ss_pred eEEEEe---CC-EEEEEEcCCeEEEEECCCCceeEEecccee----ecCCCCCeEEEEE-eCCccEEEEE----------
Q 001349 939 KCLALV---QG-KVYCGCQDGAIQEIDLATGTFATIQTGHRK----LLGKANPVHALQV-HNGLVYTAST---------- 999 (1094)
Q Consensus 939 ~~l~~s---~~-~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~----~~~h~~~V~sl~f-s~~~~~las~---------- 999 (1094)
.++.-+ +| .++.++.+|+|+..|-. |....+...... +.+....|.++.- -.+..+++-.
T Consensus 192 rs~~ksgv~~g~~F~~~~~~GtVyyvdq~-g~~~~V~k~dS~vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~v 270 (1416)
T KOG3617|consen 192 RSDEKSGVPKGTEFLFAGKSGTVYYVDQN-GRQRTVHKLDSEVQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAV 270 (1416)
T ss_pred ccccccCCCCCcEEEEEcCCceEEEEcCC-CcEEEEEEccchHHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhh
Confidence 222222 23 37788899999988843 444333222111 2222333333322 1222221111
Q ss_pred -------ECCCCEEEEEECCCC----eEEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECC-C------CcEEEEe
Q 001349 1000 -------SLDGAAVKMWSTSNY----NMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQK-R------QIRIETL 1059 (1094)
Q Consensus 1000 -------s~Dg~~I~iwd~~~~----~~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~-t------~~~~~~l 1059 (1094)
+..| .|-+-.. .| .....+..+..+++++++.. .++.|...|.+.+|--. . +.-...+
T Consensus 271 k~sgk~GgrqG-giA~sEs-sGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l 348 (1416)
T KOG3617|consen 271 KVSGKLGGRQG-GIACSES-SGVLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTL 348 (1416)
T ss_pred hhccccCCccC-ccccccc-cccccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEe
Confidence 1111 1111100 01 11122234678999999987 78889999999999532 2 1223333
Q ss_pred c--ccCCcceEEEEEcCCCCEEEE
Q 001349 1060 Q--TGTSGKVQCMALDDNEEFLVI 1081 (1094)
Q Consensus 1060 ~--~~h~~~I~~l~~Spdg~~L~s 1081 (1094)
. ....+.|+.+.|.|-.+.++.
T Consensus 349 ~~~~e~~g~I~~i~Wg~~k~~~av 372 (1416)
T KOG3617|consen 349 NGKRESLGKISLIRWGPIKSTAAV 372 (1416)
T ss_pred cCchhhccceEEEEeccccchhhh
Confidence 2 123458999999986554443
No 361
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.78 E-value=1.3e-05 Score=92.70 Aligned_cols=68 Identities=22% Similarity=0.483 Sum_probs=55.9
Q ss_pred CCCceeccCccccccCcEE-cCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHHH
Q 001349 160 PPKDFVCPITTHIFDDPVT-LETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQ 228 (1094)
Q Consensus 160 ~~~~~~CpIc~~~~~dPv~-~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~ 228 (1094)
+++++.||||..++.||+. +.|||.||+.|+..|+.. +..||.|+..+.....+..-..+++.+.++.
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKLP 86 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhcc
Confidence 5668999999999999999 499999999999999998 7789999998877766522445566666554
No 362
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.77 E-value=7.1e-06 Score=91.58 Aligned_cols=50 Identities=22% Similarity=0.439 Sum_probs=43.0
Q ss_pred CceeccCccccccCcEEcCCcccccHHhHHHHHH----hCCCCCCCCCcCCCCC
Q 001349 162 KDFVCPITTHIFDDPVTLETGQTYERRAIQEWIE----RGNSSCPITRQKLSST 211 (1094)
Q Consensus 162 ~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~----~~~~~CP~c~~~~~~~ 211 (1094)
.+..|-+|.+.-.||+...|.|+|||.||.++.. ..+.+||.|...++-.
T Consensus 535 ~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred CceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 3688999999999999999999999999988765 3345799999888754
No 363
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=1.2e-05 Score=84.91 Aligned_cols=52 Identities=19% Similarity=0.169 Sum_probs=45.2
Q ss_pred ceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCC
Q 001349 163 DFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLP 214 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~ 214 (1094)
.-.|+||...+.-||.++|+|-||.-||......+..+||+||.+++..-+.
T Consensus 7 ~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~~ 58 (324)
T KOG0824|consen 7 KKECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTIDF 58 (324)
T ss_pred CCcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcchhc
Confidence 4569999999999999999999999999985555567899999999877665
No 364
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.69 E-value=0.0095 Score=63.61 Aligned_cols=223 Identities=15% Similarity=0.155 Sum_probs=125.5
Q ss_pred ccccCcEEEEeeCCCCeEEEeCC----cc---eeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEe
Q 001349 781 LAFEMVKVLSNGHDSSADFWNHR----EL---VHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQI 851 (1094)
Q Consensus 781 ~~~d~~~l~s~s~dg~I~vWd~~----~~---~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l 851 (1094)
++.+|+.+|. -.|..|.|-..+ .. .++.....-.=..++|||| .||.+...|+|+++|+.+. .+..+
T Consensus 5 ~~~~Gk~lAi-~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~---~lf~I 80 (282)
T PF15492_consen 5 LSSDGKLLAI-LQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS---ELFVI 80 (282)
T ss_pred ecCCCcEEEE-EeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccc---eeEEc
Confidence 3455665554 355666665433 22 1233334445578999998 8999999999999999865 22233
Q ss_pred cc-------cCCCeEEEEEecC------CCEEEEEeCCCcEEEEECCCCc------eEEEEec-ccCccceeeeecCceE
Q 001349 852 RE-------HTKAVTGLAILQS------GEMLYSGSLDKTARVWSIGNEE------IHCVQVH-DIKDQIQNLAVSNSIL 911 (1094)
Q Consensus 852 ~~-------H~~~V~sv~fspd------g~~LaSgs~DgtI~vWdi~~~~------~~~~~~~-~~~~~V~~v~~~~~~~ 911 (1094)
.. -...|-.+.|.+. ...|+.-..+|.++-|-+..+. ...+... ..+..|.++.
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~v------ 154 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAV------ 154 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEE------
Confidence 21 2356777777652 2256666778888777754321 1222221 1244555555
Q ss_pred EEeeCCCeEEEEEeCCeEEEE--cCCCCceEEEEeCC----EEEEEEcCCeE------EEEECCCCceeEEeccceeecC
Q 001349 912 CFIPQGAGIKVHLRNGKTKLL--NSSKYPKCLALVQG----KVYCGCQDGAI------QEIDLATGTFATIQTGHRKLLG 979 (1094)
Q Consensus 912 ~fspdg~~l~~~~~~g~i~l~--~~~~~v~~l~~s~~----~l~sgs~Dg~I------~iwDl~~~~~~~~~~~~~~~~~ 979 (1094)
+.|..+.+.+++....-.-. .....+++...-++ +.++...|+.. .+|.+-+.... .....
T Consensus 155 -y~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~f------s~~~~ 227 (282)
T PF15492_consen 155 -YHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFF------SRQGQ 227 (282)
T ss_pred -EcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeee------ecccc
Confidence 78887777776654321100 01112333333221 12233323221 22222221111 01112
Q ss_pred CCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec
Q 001349 980 KANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP 1021 (1094)
Q Consensus 980 h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~ 1021 (1094)
....|..|..+||+..+++...+| .|.+|++.+-...+.+.
T Consensus 228 ~~d~i~kmSlSPdg~~La~ih~sG-~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 228 EQDGIFKMSLSPDGSLLACIHFSG-SLSLWEIPSLRLQRSWK 268 (282)
T ss_pred CCCceEEEEECCCCCEEEEEEcCC-eEEEEecCcchhhcccc
Confidence 346799999999999999999997 99999998877766655
No 365
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.68 E-value=0.021 Score=69.06 Aligned_cols=264 Identities=15% Similarity=0.188 Sum_probs=144.0
Q ss_pred EeCCEEEEEECCCeEEEEecCCCcceeEEEecccCC------CeE--EEEEecCCCEEEEEeCCCcEEEEECCCCceEEE
Q 001349 821 CFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTK------AVT--GLAILQSGEMLYSGSLDKTARVWSIGNEEIHCV 892 (1094)
Q Consensus 821 fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~------~V~--sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~ 892 (1094)
+..+.++.++.+|.|.-.|..++ +.+..+..... .+. .+.+. ++..++.++.||.|.-+|.++|+..-.
T Consensus 59 v~~g~vy~~~~~g~l~AlD~~tG--~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~ 135 (488)
T cd00216 59 VVDGDMYFTTSHSALFALDAATG--KVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWK 135 (488)
T ss_pred EECCEEEEeCCCCcEEEEECCCC--hhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeee
Confidence 44568888888999999999999 55555543222 110 11111 226788888999999999999873322
Q ss_pred EecccCc-c---ce-eeeecCceEEEe----------eCCCeEEEEEeCCeEEEEcCCC---------------------
Q 001349 893 QVHDIKD-Q---IQ-NLAVSNSILCFI----------PQGAGIKVHLRNGKTKLLNSSK--------------------- 936 (1094)
Q Consensus 893 ~~~~~~~-~---V~-~v~~~~~~~~fs----------pdg~~l~~~~~~g~i~l~~~~~--------------------- 936 (1094)
....... . +. +..+....+.+. .+|..++.-..+|.. +|....
T Consensus 136 ~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~-~W~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (488)
T cd00216 136 FGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKL-LWRFYTTEPDPNAFPTWGPDRQMWGPG 214 (488)
T ss_pred ecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCce-eeEeeccCCCcCCCCCCCCCcceecCC
Confidence 2211110 0 10 111111111111 112222222223332 232110
Q ss_pred --Cc-eEEEEe--CCEEEEEEcCC------------------eEEEEECCCCceeEEecccee----ecCCCCCe-EEEE
Q 001349 937 --YP-KCLALV--QGKVYCGCQDG------------------AIQEIDLATGTFATIQTGHRK----LLGKANPV-HALQ 988 (1094)
Q Consensus 937 --~v-~~l~~s--~~~l~sgs~Dg------------------~I~iwDl~~~~~~~~~~~~~~----~~~h~~~V-~sl~ 988 (1094)
.+ ...++. .+.+++++.++ .|.-+|..+|+....+..... +.+...++ ..+.
T Consensus 215 g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~ 294 (488)
T cd00216 215 GGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIK 294 (488)
T ss_pred CCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecc
Confidence 00 012332 46788888775 799999999998865432100 01111111 1111
Q ss_pred -EeCCc-cEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCCEEEEEE------------------cCCeEEEE
Q 001349 989 -VHNGL-VYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSELVYLGC------------------KGGTVEIW 1048 (1094)
Q Consensus 989 -fs~~~-~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd~l~sgs------------------~dg~I~vw 1048 (1094)
.+... .+++.++.+| .+...|..+|+.+...... ...++.+|+.++.++ .+|.+.-.
T Consensus 295 ~~~g~~~~~V~~g~~~G-~l~ald~~tG~~~W~~~~~--~~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~Al 371 (488)
T cd00216 295 PKDGKPVPAIVHAPKNG-FFYVLDRTTGKLISARPEV--EQPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAAL 371 (488)
T ss_pred ccCCCeeEEEEEECCCc-eEEEEECCCCcEeeEeEee--ccccccCCceEEEccccccccCcccccCCCCCCCceEEEEE
Confidence 11111 2455555665 8999999999998876532 122445566555532 36789999
Q ss_pred ECCCCcEEEEecccC-C------cce--EEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1049 DQKRQIRIETLQTGT-S------GKV--QCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1049 d~~t~~~~~~l~~~h-~------~~I--~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
|..+|+.+.....+. . ... ..+.. .+..|++++.||.|+.+|.
T Consensus 372 D~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~ 423 (488)
T cd00216 372 DPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDA 423 (488)
T ss_pred eCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEEC
Confidence 999999888775330 0 111 12222 4678888999999998875
No 366
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.64 E-value=3.2e-05 Score=67.04 Aligned_cols=45 Identities=24% Similarity=0.591 Sum_probs=33.2
Q ss_pred ccCccccccC-cEEc-CCcccccHHhHHHHHHh--CCCCCCCCCcCCCC
Q 001349 166 CPITTHIFDD-PVTL-ETGQTYERRAIQEWIER--GNSSCPITRQKLSS 210 (1094)
Q Consensus 166 CpIc~~~~~d-Pv~~-~cGhtfc~~ci~~~~~~--~~~~CP~c~~~~~~ 210 (1094)
||.|.-.-.| |++. .|||.|=..||.+|++. .+..||+||++...
T Consensus 35 Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 35 CPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 4444443334 6655 89999999999999985 34679999997653
No 367
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.64 E-value=0.0049 Score=72.71 Aligned_cols=112 Identities=13% Similarity=0.152 Sum_probs=82.6
Q ss_pred cEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCce---EE
Q 001349 815 KVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEI---HC 891 (1094)
Q Consensus 815 ~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~---~~ 891 (1094)
..+|++-..++++.|+.-|.+++|+-.++.. ......+-.+.+..+..|++..++|.|+..|.|.|+.+..+.. ..
T Consensus 37 ~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~-~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~ 115 (726)
T KOG3621|consen 37 KLTCVDATEEYLAMGSSAGSVYLYNRHTGEM-RKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDY 115 (726)
T ss_pred EEEEeecCCceEEEecccceEEEEecCchhh-hcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCccee
Confidence 3456666667999999999999999888732 2333334556677788888889999999999999998877541 11
Q ss_pred EEe--cccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC
Q 001349 892 VQV--HDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS 934 (1094)
Q Consensus 892 ~~~--~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~ 934 (1094)
+.. ..|+..|+++. |++++..+.++...|++.....
T Consensus 116 ~t~~d~~~~~rVTal~-------Ws~~~~k~ysGD~~Gkv~~~~L 153 (726)
T KOG3621|consen 116 VTPCDKSHKCRVTALE-------WSKNGMKLYSGDSQGKVVLTEL 153 (726)
T ss_pred eccccccCCceEEEEE-------ecccccEEeecCCCceEEEEEe
Confidence 211 12577888888 8999999988888888766543
No 368
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.62 E-value=0.0008 Score=78.30 Aligned_cols=261 Identities=13% Similarity=0.148 Sum_probs=163.0
Q ss_pred hhhccccchHhHHHHHHHHHHHHHhccchHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccchhhhhcc
Q 001349 275 SLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTR 354 (1094)
Q Consensus 275 ~L~~s~~l~~~e~a~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~ 354 (1094)
.|..+..-.-+|+|+-.+-.++.++..=+.+. -...++.-++.+|..+..-...+.+.-.|.+|-.. +.=---+..
T Consensus 159 ~Ll~s~~~~v~eQavWALgNIagds~~~Rd~v---l~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrg-k~P~P~~~~ 234 (514)
T KOG0166|consen 159 QLLSSPSADVREQAVWALGNIAGDSPDCRDYV---LSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRG-KNPSPPFDV 234 (514)
T ss_pred HHhcCCcHHHHHHHHHHHhccccCChHHHHHH---HhhcchHHHHHHhccccchHHHHHHHHHHHHHHcC-CCCCCcHHH
Confidence 34445555567888888888887775433222 23334455666666655556789999999999432 210001111
Q ss_pred CCCcHHHHHHHHhcC----hHHHHHHHHhcCCChHHHHH----hhhhHHHHHHHHhcccc------------------cc
Q 001349 355 VESDVERIVALFKKG----LLEAVVLIDLLRPSTRTLIE----MDMMESLMTVIKKKEED------------------FL 408 (1094)
Q Consensus 355 ~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~~~~~~~----~~~~~~Ll~~l~~~~~~------------------~~ 408 (1094)
....+|.|..+|+.- ..+|..+|-.|.--..+.+. .+.+|.|+++|...+-. ++
T Consensus 235 v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QT 314 (514)
T KOG0166|consen 235 VAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQT 314 (514)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHH
Confidence 234568888888775 66888888877543333333 34449999999874311 00
Q ss_pred ccccCchhhHHHHHHHHhcCCc---------------ccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHh
Q 001349 409 KMCLKPKSVSVLLLGQMIGDSE---------------ESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCM 473 (1094)
Q Consensus 409 ~~~~~~~~aa~~~l~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~ 473 (1094)
...+ ...++..|..|++... -+.+.+..-+++..|-+|.|+..+++++-+-|.-|+.++.++.
T Consensus 315 q~vi--~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~t 392 (514)
T KOG0166|consen 315 QVVI--NSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLT 392 (514)
T ss_pred HHHH--hcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhc
Confidence 0000 0122222222222111 2345667788899999999999999999999999999888665
Q ss_pred hcc-CcchhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHHHHhccccchh---HHHHHHhhhcCcchhHHH
Q 001349 474 QED-GKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFN---EQILHIIKDEGTYSSMHT 541 (1094)
Q Consensus 474 ~~~-~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el~~~~r~~~~---~~~l~~i~~~~~~~~~~~ 541 (1094)
... ..--.|+.+.+-++||..||.....+-=..++..|..++.....-.. +..-..|++-|+...|+.
T Consensus 393 s~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~ 464 (514)
T KOG0166|consen 393 SSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIEN 464 (514)
T ss_pred ccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHH
Confidence 443 34446788889999999999555555544568888888776532211 445556888888887655
No 369
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.00041 Score=77.10 Aligned_cols=227 Identities=12% Similarity=0.062 Sum_probs=148.7
Q ss_pred CcEEEEeeCCCCeEEEeCCc-----ceeecccCCCcEEEEEEeCC--EEEEEEC-CCeEEEEecCCCcceeEEEecccCC
Q 001349 785 MVKVLSNGHDSSADFWNHRE-----LVHVDSSENGKVLSIACFRD--KIFSGHS-DGTIKVWTGRGSILHLIQQIREHTK 856 (1094)
Q Consensus 785 ~~~l~s~s~dg~I~vWd~~~-----~~~~~~~h~~~V~~l~fspd--~LaSgs~-Dg~I~vWd~~t~~~~~~~~l~~H~~ 856 (1094)
..++.+++.||.++.|.... .+..+..|.+.|.+++.+-+ ++.|++. |..++++|+.+-.......+..-.+
T Consensus 20 a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg 99 (558)
T KOG0882|consen 20 AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPG 99 (558)
T ss_pred hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCC
Confidence 56889999999999998763 34455678888888888876 7778777 9999999988653221222222223
Q ss_pred CeEEEEEec-CC--CEEEEEeCCCcEEEEECCCCc-eEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEE
Q 001349 857 AVTGLAILQ-SG--EMLYSGSLDKTARVWSIGNEE-IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLL 932 (1094)
Q Consensus 857 ~V~sv~fsp-dg--~~LaSgs~DgtI~vWdi~~~~-~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~ 932 (1094)
.+..+ .++ |. ..-++.-.+|.+.|+|-..+. .......-|..+|..+. +.+.+..+.+....|-+..|
T Consensus 100 ~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~-------y~qa~Ds~vSiD~~gmVEyW 171 (558)
T KOG0882|consen 100 FAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIR-------YNQAGDSAVSIDISGMVEYW 171 (558)
T ss_pred ceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEE-------eeccccceeeccccceeEee
Confidence 22221 122 11 222333457889999976653 23333444677888877 66666666666656666666
Q ss_pred cCC---------------------------CCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEeccc---------
Q 001349 933 NSS---------------------------KYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGH--------- 974 (1094)
Q Consensus 933 ~~~---------------------------~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~--------- 974 (1094)
... ....++.+++ ..+.+-+.|..|++++.++|+....+.-.
T Consensus 172 s~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~k 251 (558)
T KOG0882|consen 172 SAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPK 251 (558)
T ss_pred cCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccc
Confidence 532 3456777765 45788889999999999998866433211
Q ss_pred -----------------eeecCCC-CCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec
Q 001349 975 -----------------RKLLGKA-NPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP 1021 (1094)
Q Consensus 975 -----------------~~~~~h~-~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~ 1021 (1094)
+.+..|. ..-+.+.|+..+.++.-++.=| |++.++.++.+++.+.
T Consensus 252 s~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g--ikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 252 SPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG--IKVINLDTNTVVRILG 314 (558)
T ss_pred cccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee--EEEEEeecCeEEEEec
Confidence 0111232 2345677888888988887765 9999999998887764
No 370
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.62 E-value=0.022 Score=62.62 Aligned_cols=199 Identities=14% Similarity=0.132 Sum_probs=109.0
Q ss_pred EEEeCC--EEEEE-----ECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeC-------CCc------
Q 001349 819 IACFRD--KIFSG-----HSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSL-------DKT------ 878 (1094)
Q Consensus 819 l~fspd--~LaSg-----s~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~-------Dgt------ 878 (1094)
-.||+| +|++. +..|.|-|||... .+..+.++..|.-.-..+.+.|||+.|+.+-. .|.
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~-~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~ 134 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAAR-GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLD 134 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcC-CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChh
Confidence 468886 66665 4468999999993 34788888888877888999999988877632 111
Q ss_pred -----EEEEECCCCceEEEE-e--cccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEE
Q 001349 879 -----ARVWSIGNEEIHCVQ-V--HDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYC 950 (1094)
Q Consensus 879 -----I~vWdi~~~~~~~~~-~--~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~s 950 (1094)
+..-|..+|++.... . ..+...+..++ +.++|..+...-+.|.-. . .+-.++.
T Consensus 135 tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa-------~~~~G~V~~a~Q~qg~~~-----~-------~~PLva~ 195 (305)
T PF07433_consen 135 TMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLA-------VDGDGTVAFAMQYQGDPG-----D-------APPLVAL 195 (305)
T ss_pred hcCCceEEEecCCCceeeeeecCccccccceeeEE-------ecCCCcEEEEEecCCCCC-----c-------cCCeEEE
Confidence 222223333211110 0 11122233333 333332221111111000 0 0001122
Q ss_pred EEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEE
Q 001349 951 GCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMV 1030 (1094)
Q Consensus 951 gs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~ 1030 (1094)
-..++.++..+.... ....-...+-+|++++++.+++.+++-|+.+.+||..++..+....- ..+..++
T Consensus 196 ~~~g~~~~~~~~p~~----------~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l-~D~cGva 264 (305)
T PF07433_consen 196 HRRGGALRLLPAPEE----------QWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL-PDACGVA 264 (305)
T ss_pred EcCCCcceeccCChH----------HHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc-Cceeeee
Confidence 222222222222211 12233457889999999998888888888999999999988876543 2355666
Q ss_pred EeCCEEEEEEcCCeEEEE
Q 001349 1031 VSSELVYLGCKGGTVEIW 1048 (1094)
Q Consensus 1031 ~spd~l~sgs~dg~I~vw 1048 (1094)
..++.++..+..|.+...
T Consensus 265 ~~~~~f~~ssG~G~~~~~ 282 (305)
T PF07433_consen 265 PTDDGFLVSSGQGQLIRL 282 (305)
T ss_pred ecCCceEEeCCCccEEEc
Confidence 666655555555554333
No 371
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.60 E-value=0.013 Score=73.19 Aligned_cols=230 Identities=13% Similarity=0.121 Sum_probs=125.8
Q ss_pred CCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc--
Q 001349 813 NGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE-- 888 (1094)
Q Consensus 813 ~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~-- 888 (1094)
.+.|.++.|..+ .++.+..+|.|.+-|..+..+..+. .-.+.|.+++||||++.++..+.++++.+-+-.-.-
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg---~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~ 144 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVG---NVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIA 144 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeee---eccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchh
Confidence 468999999875 8888899999999999887444333 346789999999999999999998888765432100
Q ss_pred eEEE-EecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEE---EcCCCCceEEEEeC-CE-EEE----EEcC-CeE
Q 001349 889 IHCV-QVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKL---LNSSKYPKCLALVQ-GK-VYC----GCQD-GAI 957 (1094)
Q Consensus 889 ~~~~-~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l---~~~~~~v~~l~~s~-~~-l~s----gs~D-g~I 957 (1094)
.+.+ ......+....+-|......|.-.+-..+....--.-+. ......-.++.|-+ |. +++ .-.+ ..|
T Consensus 145 E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rki 224 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKI 224 (1265)
T ss_pred ccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeE
Confidence 0011 000011122222222222222211100000000000000 00112223455543 32 332 1233 789
Q ss_pred EEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECC--CCEEEEEECCCCeEEEE----ecC-CCCEEEEE
Q 001349 958 QEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLD--GAAVKMWSTSNYNMVGS----LPT-LSEVRAMV 1030 (1094)
Q Consensus 958 ~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~D--g~~I~iwd~~~~~~~~~----~~~-~~~v~~l~ 1030 (1094)
++||-. |....+- ....+.-.+++|-|.|..+++...+ +..|.+|.-+ |-.-.. ++- ...+..++
T Consensus 225 rV~drE-g~Lns~s------e~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL~hg~f~l~~p~de~~ve~L~ 296 (1265)
T KOG1920|consen 225 RVYDRE-GALNSTS------EPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GLRHGEFVLPFPLDEKEVEELA 296 (1265)
T ss_pred EEeccc-chhhccc------CcccccccceeecCCCCeEeeeeecCCCCcEEEEecC-CccccccccCCcccccchheee
Confidence 999976 5443211 1112334578999999888886432 2368888753 333332 332 33489999
Q ss_pred EeCC--EEEE---EEcCCeEEEEECCCC
Q 001349 1031 VSSE--LVYL---GCKGGTVEIWDQKRQ 1053 (1094)
Q Consensus 1031 ~spd--~l~s---gs~dg~I~vwd~~t~ 1053 (1094)
|+.+ .+++ ......|++|-+.+.
T Consensus 297 Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 297 WNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred ecCCCCceeeeecccccceEEEEEecCe
Confidence 9887 4544 334455999987764
No 372
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=3.3e-05 Score=81.44 Aligned_cols=47 Identities=19% Similarity=0.347 Sum_probs=41.5
Q ss_pred ceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCC
Q 001349 163 DFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSS 210 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~ 210 (1094)
.|.|-||.+.|.+||++.|||+||..|-...+.. ...|++|.+....
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~t~g 287 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK-GEKCYVCSQQTHG 287 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhcccccc-CCcceeccccccc
Confidence 4789999999999999999999999999888776 3479999987654
No 373
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.52 E-value=4.2e-05 Score=75.18 Aligned_cols=47 Identities=17% Similarity=0.411 Sum_probs=40.5
Q ss_pred ceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCC
Q 001349 163 DFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSS 210 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~ 210 (1094)
.|.|-||..-++.||++.|||.||..|..+-... ...|-+|++....
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k-g~~C~~Cgk~t~G 242 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQK-GDECGVCGKATYG 242 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhcc-CCcceecchhhcc
Confidence 4999999999999999999999999998876665 3479999986543
No 374
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.52 E-value=0.0045 Score=67.22 Aligned_cols=186 Identities=11% Similarity=0.198 Sum_probs=131.6
Q ss_pred HhhhHhhhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCCChHHHHHh
Q 001349 315 INGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPSTRTLIEM 390 (1094)
Q Consensus 315 ~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~~~~~~~~ 390 (1094)
++-++.+|-.+.|+-+++.+..+|.+...... .+.+.+.-|.++.+..+|... ...|..+|.+|+...+|...|
T Consensus 14 l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~--nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~I 91 (254)
T PF04826_consen 14 LQKLLCLLESTEDPFIQEKALIALGNSAAFPF--NQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQI 91 (254)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhccChh--HHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHH
Confidence 45577788888999999999999999855432 445555667899999999887 567888999999999999999
Q ss_pred hhh-HHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHH
Q 001349 391 DMM-ESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGIL 469 (1094)
Q Consensus 391 ~~~-~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l 469 (1094)
+.. +.++..+-+..-+. .-+.+++.+|.+| +....+...+ .+.++-++.+|..|+..-|..+-.+|
T Consensus 92 k~~i~~Vc~~~~s~~lns-----~~Q~agLrlL~nL------tv~~~~~~~l--~~~i~~ll~LL~~G~~~~k~~vLk~L 158 (254)
T PF04826_consen 92 KMYIPQVCEETVSSPLNS-----EVQLAGLRLLTNL------TVTNDYHHML--ANYIPDLLSLLSSGSEKTKVQVLKVL 158 (254)
T ss_pred HHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHcc------CCCcchhhhH--HhhHHHHHHHHHcCChHHHHHHHHHH
Confidence 865 55555444431110 1256777777766 2222222223 24789999999999999999988865
Q ss_pred HHHhhccCcchhhHhhhcCchhHHHHHHhcCCch-hHHHHHHHHHHHh
Q 001349 470 LRCMQEDGKCRNSIADKAELAPVMESFMAASDGE-RFEIVCFLSELVK 516 (1094)
Q Consensus 470 ~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~l~el~~ 516 (1094)
+ ++..+......+..+..+++|+.|+.+...++ -..++.++..+..
T Consensus 159 ~-nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 159 V-NLSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINE 205 (254)
T ss_pred H-HhccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 5 45666665555555568899999999876555 4456777766633
No 375
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=9.4e-05 Score=77.20 Aligned_cols=47 Identities=19% Similarity=0.351 Sum_probs=39.1
Q ss_pred ceeccCccccccCcEEc-CCcccccHHhHHHHHH-hCCCCCCCCCcCCC
Q 001349 163 DFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIE-RGNSSCPITRQKLS 209 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~~-~cGhtfc~~ci~~~~~-~~~~~CP~c~~~~~ 209 (1094)
+-.||+|++.=..|.+. +|||.||+.||.+-.. ....+||.|+....
T Consensus 239 ~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 239 DTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred CceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 78899999999999987 6999999999998443 22457999997654
No 376
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.49 E-value=0.075 Score=59.02 Aligned_cols=228 Identities=16% Similarity=0.182 Sum_probs=128.0
Q ss_pred EeCCEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEE-------
Q 001349 821 CFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQ------- 893 (1094)
Q Consensus 821 fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~------- 893 (1094)
-..+.|+.|+.+| +.+++..... ...... +...|..+...|+-+.+++-++ +++.++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~-~~~~i~--~~~~I~ql~vl~~~~~llvLsd-~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPS-KPTRIL--KLSSITQLSVLPELNLLLVLSD-GQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCc-cceeEe--ecceEEEEEEecccCEEEEEcC-CccEEEEchhhccccccccccccc
Confidence 3446899999999 8999983221 222222 3334999999998777777664 99999998764311100
Q ss_pred ------ecccCccceeee----ecCceEEEeeCCCeEEEEEeCC-------eEEEEcCCCCceEEEEeCCEEEEEEcCCe
Q 001349 894 ------VHDIKDQIQNLA----VSNSILCFIPQGAGIKVHLRNG-------KTKLLNSSKYPKCLALVQGKVYCGCQDGA 956 (1094)
Q Consensus 894 ------~~~~~~~V~~v~----~~~~~~~fspdg~~l~~~~~~g-------~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~ 956 (1094)
.......+...+ .......+....+.+.+..+.. ..+-+.....+.++.|.++.+++|..++
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~- 158 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSKG- 158 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCCc-
Confidence 001111111111 0000000111111222222221 1122334567888888888888888655
Q ss_pred EEEEECCCCceeEEecccee------ecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEE--EecCCCCEEE
Q 001349 957 IQEIDLATGTFATIQTGHRK------LLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVG--SLPTLSEVRA 1028 (1094)
Q Consensus 957 I~iwDl~~~~~~~~~~~~~~------~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~--~~~~~~~v~~ 1028 (1094)
..+.|+.++........... ......++..+.... +.++++. + .+-+|=-..|++.+ .+.-...+.+
T Consensus 159 f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~Ll~~--~--~~g~fv~~~G~~~r~~~i~W~~~p~~ 233 (275)
T PF00780_consen 159 FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSD-NEFLLCY--D--NIGVFVNKNGEPSRKSTIQWSSAPQS 233 (275)
T ss_pred eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCC-ceEEEEe--c--ceEEEEcCCCCcCcccEEEcCCchhE
Confidence 78889998776544321110 011123444444443 4566654 2 23344334555444 3444567788
Q ss_pred EEEeCCEEEEEEcCCeEEEEECCCCcEEEEec
Q 001349 1029 MVVSSELVYLGCKGGTVEIWDQKRQIRIETLQ 1060 (1094)
Q Consensus 1029 l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~ 1060 (1094)
+++...++++.+.+ .|.||++.+++.++++.
T Consensus 234 ~~~~~pyli~~~~~-~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 234 VAYSSPYLIAFSSN-SIEVRSLETGELVQTIP 264 (275)
T ss_pred EEEECCEEEEECCC-EEEEEECcCCcEEEEEE
Confidence 88888887776664 59999999999999884
No 377
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.48 E-value=0.0042 Score=74.16 Aligned_cols=176 Identities=8% Similarity=0.055 Sum_probs=114.9
Q ss_pred cccCcEEEEeeCCCCeEEEeCCcceeecccCCCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEE
Q 001349 782 AFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGL 861 (1094)
Q Consensus 782 ~~d~~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv 861 (1094)
...+..++.|..+|.|++.+..........|... .-.+.+++||+.||+|.|-.+.+. ....++ ....++.+|
T Consensus 46 av~~~~~~~GtH~g~v~~~~~~~~~~~~~~~s~~----~~~Gey~asCS~DGkv~I~sl~~~--~~~~~~-df~rpiksi 118 (846)
T KOG2066|consen 46 AVHDKFFALGTHRGAVYLTTCQGNPKTNFDHSSS----ILEGEYVASCSDDGKVVIGSLFTD--DEITQY-DFKRPIKSI 118 (846)
T ss_pred HhhcceeeeccccceEEEEecCCccccccccccc----ccCCceEEEecCCCcEEEeeccCC--ccceeE-ecCCcceeE
Confidence 3447899999999999999987433555555444 222349999999999999998887 333333 245789999
Q ss_pred EEecC-----CCEEEEEeCCCcEEEEECCC-CceEEEEecccCccceeeeecCceEEEeeCC-CeEEEEEeCCeEEEEc-
Q 001349 862 AILQS-----GEMLYSGSLDKTARVWSIGN-EEIHCVQVHDIKDQIQNLAVSNSILCFIPQG-AGIKVHLRNGKTKLLN- 933 (1094)
Q Consensus 862 ~fspd-----g~~LaSgs~DgtI~vWdi~~-~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg-~~l~~~~~~g~i~l~~- 933 (1094)
+++|| .+.+++||.-| +.++.-+- |....+......++|.++.|.++.++|..|- -.+.-...+..+....
T Consensus 119 al~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~lIAWand~Gv~vyd~~~~~~l~~i~~ 197 (846)
T KOG2066|consen 119 ALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGNLIAWANDDGVKVYDTPTRQRLTNIPP 197 (846)
T ss_pred EeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCcEEEEecCCCcEEEeccccceeeccCC
Confidence 99997 57899999988 76665321 1123334566788999999888887776543 2221111111121111
Q ss_pred ------CCCCceEEEEeCCEEEEEEcCCeEEEEECCCC
Q 001349 934 ------SSKYPKCLALVQGKVYCGCQDGAIQEIDLATG 965 (1094)
Q Consensus 934 ------~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~ 965 (1094)
.......+.|.+...++-+...+|++..++.+
T Consensus 198 p~~~~R~e~fpphl~W~~~~~LVIGW~d~v~i~~I~~~ 235 (846)
T KOG2066|consen 198 PSQSVRPELFPPHLHWQDEDRLVIGWGDSVKICSIKKR 235 (846)
T ss_pred CCCCCCcccCCCceEecCCCeEEEecCCeEEEEEEecc
Confidence 12345667777655555556678888888733
No 378
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.41 E-value=0.045 Score=64.58 Aligned_cols=215 Identities=9% Similarity=0.022 Sum_probs=112.8
Q ss_pred EEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCe
Q 001349 849 QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGK 928 (1094)
Q Consensus 849 ~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~ 928 (1094)
+.+....-....+.++|+|++++. +.||...|+...... .... +.- ...+|.+.++ .++...++.
T Consensus 26 k~lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r--~k~~----G~g-------~~~vw~~~n~-yAv~~~~~~ 90 (443)
T PF04053_consen 26 KELGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWR--NKAF----GSG-------LSFVWSSRNR-YAVLESSST 90 (443)
T ss_dssp EEEEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTE--EEEE----EE--------SEEEE-TSSE-EEEE-TTS-
T ss_pred ccCCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCc--cccc----Cce-------eEEEEecCcc-EEEEECCCe
Confidence 334344556789999999999888 556778888744321 1111 111 1233777444 566666777
Q ss_pred EEEEc-CCC--------CceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEE
Q 001349 929 TKLLN-SSK--------YPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTAST 999 (1094)
Q Consensus 929 i~l~~-~~~--------~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~ 999 (1094)
+.++. ... ...+-...+|.++....++.|.+||+.+++.+.... . .+|..+.|++++.+++-.
T Consensus 91 I~I~kn~~~~~~k~i~~~~~~~~If~G~LL~~~~~~~i~~yDw~~~~~i~~i~------v--~~vk~V~Ws~~g~~val~ 162 (443)
T PF04053_consen 91 IKIYKNFKNEVVKSIKLPFSVEKIFGGNLLGVKSSDFICFYDWETGKLIRRID------V--SAVKYVIWSDDGELVALV 162 (443)
T ss_dssp EEEEETTEE-TT-----SS-EEEEE-SSSEEEEETTEEEEE-TTT--EEEEES------S---E-EEEEE-TTSSEEEEE
T ss_pred EEEEEcCccccceEEcCCcccceEEcCcEEEEECCCCEEEEEhhHcceeeEEe------c--CCCcEEEEECCCCEEEEE
Confidence 87753 211 111222223666666667799999999999884332 1 248999999999999888
Q ss_pred ECCCCEEEEEECCCC-----------eEEEEecC-CCCEEEEEEeCCEEEEEEcCCeEEEEECCCCcEEEEecccCCcce
Q 001349 1000 SLDGAAVKMWSTSNY-----------NMVGSLPT-LSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKV 1067 (1094)
Q Consensus 1000 s~Dg~~I~iwd~~~~-----------~~~~~~~~-~~~v~~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I 1067 (1094)
+.+ .+.|++.... .....+.. ...|.+..|..|.++-.+.. .++.+--.....+..+ ..++
T Consensus 163 t~~--~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT~~-~lkYl~~Ge~~~i~~l----d~~~ 235 (443)
T PF04053_consen 163 TKD--SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVEDCFIYTTSN-HLKYLVNGETGIIAHL----DKPL 235 (443)
T ss_dssp -S---SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETTEEEEE-TT-EEEEEETTEEEEEEE-----SS--
T ss_pred eCC--eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcCEEEEEcCC-eEEEEEcCCcceEEEc----CCce
Confidence 766 5777775432 02223332 66788888888843333333 6665322222223333 3356
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1068 QCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1068 ~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
.=+.+.+..+.++....|+.|..+.+
T Consensus 236 yllgy~~~~~~ly~~Dr~~~v~~~~l 261 (443)
T PF04053_consen 236 YLLGYLPKENRLYLIDRDGNVISYEL 261 (443)
T ss_dssp EEEEEETTTTEEEEE-TT--EEEEE-
T ss_pred EEEEEEccCCEEEEEECCCCEEEEEE
Confidence 67778887788999999999988765
No 379
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.39 E-value=0.065 Score=56.28 Aligned_cols=102 Identities=10% Similarity=-0.034 Sum_probs=62.1
Q ss_pred cCcEEEEeeCCCCeEEEeCCcceeecc-cCCCcE---EEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccCCCeE
Q 001349 784 EMVKVLSNGHDSSADFWNHRELVHVDS-SENGKV---LSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVT 859 (1094)
Q Consensus 784 d~~~l~s~s~dg~I~vWd~~~~~~~~~-~h~~~V---~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~ 859 (1094)
-|+.++.|.+.|.+.+-+.++..+... .-.+.| -.++|+...+..|+.|++.+.-|..+. .++...+...+...
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~--~cVykskcgG~~f~ 139 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTY--GCVYKSKCGGGTFV 139 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEeccccc--ceEEecccCCceec
Confidence 367789999999998877764321111 111122 234555669999999999999999987 67777654443333
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCC
Q 001349 860 GLAILQSGEMLYSGSLDKTARVWSIGNE 887 (1094)
Q Consensus 860 sv~fspdg~~LaSgs~DgtI~vWdi~~~ 887 (1094)
+-++.|-...|+.+...|.|.--..+++
T Consensus 140 sP~i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 140 SPVIAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred cceecCCCceEEEEeccceEEEEccCCC
Confidence 4445552233444444555555455544
No 380
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.004 Score=68.79 Aligned_cols=245 Identities=12% Similarity=0.103 Sum_probs=130.4
Q ss_pred hhccccccccccCc-EEEEeeCCCCeEEEeCCc--ceeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcce
Q 001349 773 RELRKYSPLAFEMV-KVLSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILH 846 (1094)
Q Consensus 773 ~~~~~~~~~~~d~~-~l~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~ 846 (1094)
..+++...+++... .+..++.+.+|+|.|+.+ ....+..| ..+++++|.-| +|+.|...|.|.|||+...+ .
T Consensus 193 g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~-~ 270 (463)
T KOG1645|consen 193 GSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE-G 270 (463)
T ss_pred chhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCC-c
Confidence 34455556776666 788899999999999983 34444455 88999999865 99999999999999998653 2
Q ss_pred eEEEecc--cCCCeEEEEE------ecCCCEEEEEeCCCcEEEEECCCCc--eEEEEecccCccceeeeecCceEEEeeC
Q 001349 847 LIQQIRE--HTKAVTGLAI------LQSGEMLYSGSLDKTARVWSIGNEE--IHCVQVHDIKDQIQNLAVSNSILCFIPQ 916 (1094)
Q Consensus 847 ~~~~l~~--H~~~V~sv~f------spdg~~LaSgs~DgtI~vWdi~~~~--~~~~~~~~~~~~V~~v~~~~~~~~fspd 916 (1094)
.+..+.+ ...+|..++. .+.|.+++..+.+ ...|.+.... ..++...+..+...++. +.+-
T Consensus 271 ~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismq-------y~~~ 341 (463)
T KOG1645|consen 271 PLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQ-------YHGV 341 (463)
T ss_pred hHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeee-------ecCc
Confidence 2333322 2234444333 2334455544443 5567665432 12222222222222222 2332
Q ss_pred CCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEec----cceeecCCCCCeEEEEEeCC
Q 001349 917 GAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQT----GHRKLLGKANPVHALQVHNG 992 (1094)
Q Consensus 917 g~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~----~~~~~~~h~~~V~sl~fs~~ 992 (1094)
.+.+++..... ..-..+. .+.+. -|-.+|..+.... +...-.-++.. .+.-.++
T Consensus 342 snh~l~tyRs~--------pn~p~~r-----~il~~-------~d~~dG~pVc~~r~~~~Gs~~~kl~t~~--ai~~~~~ 399 (463)
T KOG1645|consen 342 SNHLLLTYRSN--------PNFPQSR-----FILGR-------IDFRDGFPVCGKRRTYFGSKQTKLSTTQ--AIRAVED 399 (463)
T ss_pred cceEEEEecCC--------CCCccce-----eeeee-------eccccCceeeeecccccCCccccccccc--ceecccc
Confidence 34433332221 1000110 11111 1112222221100 00000001111 1112345
Q ss_pred ccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC----EEEEEEcCCeEEEEECC
Q 001349 993 LVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE----LVYLGCKGGTVEIWDQK 1051 (1094)
Q Consensus 993 ~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd----~l~sgs~dg~I~vwd~~ 1051 (1094)
..+++..+.+-+.+.+||..+++.++++....+|..+....- ++++-. |..++||..+
T Consensus 400 nn~iv~~gd~tn~lil~D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 400 NNYIVVVGDSTNELILQDPHSFEVVQTLALSEPVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred ccEEEEecCCcceeEEeccchhheeeecccCcceeecceeecCCcchhhhee-cceEEEEecC
Confidence 566666665667999999999999999998888877766532 454444 5567777654
No 381
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.37 E-value=0.053 Score=62.73 Aligned_cols=272 Identities=10% Similarity=0.043 Sum_probs=128.8
Q ss_pred CCCCeEEEeCCcce-eecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEeccc---------------
Q 001349 793 HDSSADFWNHRELV-HVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREH--------------- 854 (1094)
Q Consensus 793 ~dg~I~vWd~~~~~-~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H--------------- 854 (1094)
..+.+.+||+.+.. ..+......+....|||+ .++-. .++.|.+++..++....+ +..|-
T Consensus 21 ~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v-~~~nly~~~~~~~~~~~l-T~dg~~~i~nG~~dwvyeEE 98 (353)
T PF00930_consen 21 FKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFV-RDNNLYLRDLATGQETQL-TTDGEPGIYNGVPDWVYEEE 98 (353)
T ss_dssp EEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEE-ETTEEEEESSTTSEEEES-ES--TTTEEESB--HHHHHH
T ss_pred cceeEEEEecCCCceEECcCCccccccceeecCCCeeEEE-ecCceEEEECCCCCeEEe-ccccceeEEcCccceecccc
Confidence 34567788887432 223333578899999997 54444 468999999887732211 11220
Q ss_pred -CCCeEEEEEecCCCEEEEEeCC-CcEEEEEC---CCCc-----eEEEEecccCccceeeeecCceEEEeeCCCeEEEEE
Q 001349 855 -TKAVTGLAILQSGEMLYSGSLD-KTARVWSI---GNEE-----IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHL 924 (1094)
Q Consensus 855 -~~~V~sv~fspdg~~LaSgs~D-gtI~vWdi---~~~~-----~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~ 924 (1094)
-+.-..+-|||||++|+....| ..|+.+.+ .... ...+.-.....+...+. ..++..
T Consensus 99 v~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~-------------l~v~~~ 165 (353)
T PF00930_consen 99 VFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVS-------------LFVVDL 165 (353)
T ss_dssp TSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEE-------------EEEEES
T ss_pred ccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceE-------------EEEEEC
Confidence 1123567899999999877654 33443332 2211 11111100011111111 111111
Q ss_pred eCCeE---EEE----cCCCCceEEEEeC-CE-EEEEEcC-----CeEEEEECCCCceeEEeccceeecCCCCCeEEEEEe
Q 001349 925 RNGKT---KLL----NSSKYPKCLALVQ-GK-VYCGCQD-----GAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVH 990 (1094)
Q Consensus 925 ~~g~i---~l~----~~~~~v~~l~~s~-~~-l~sgs~D-----g~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs 990 (1094)
..+.+ .+. .....+..+.|.+ +. +++.-.+ ..+.++|..++....... ....+.-..-....|.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~--e~~~~Wv~~~~~~~~~ 243 (353)
T PF00930_consen 166 ASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLE--ETSDGWVDVYDPPHFL 243 (353)
T ss_dssp SSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEE--EESSSSSSSSSEEEE-
T ss_pred CCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEE--ecCCcceeeecccccc
Confidence 11111 111 1123345555542 33 3333222 236667877766543332 1111222223345554
Q ss_pred -C-CccEEEEEECCC-CEEEEEECCCCeEEEEec-CCCCEEE-EEEeCC---EEEEEEcC----CeEEEEECCCCcEEEE
Q 001349 991 -N-GLVYTASTSLDG-AAVKMWSTSNYNMVGSLP-TLSEVRA-MVVSSE---LVYLGCKG----GTVEIWDQKRQIRIET 1058 (1094)
Q Consensus 991 -~-~~~~las~s~Dg-~~I~iwd~~~~~~~~~~~-~~~~v~~-l~~spd---~l~sgs~d----g~I~vwd~~t~~~~~~ 1058 (1094)
+ +..++.....+| ..|.+++...+.. +.+. +.-.|.. +.++++ ..+++..+ ..|+.-++..+..+..
T Consensus 244 ~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~ 322 (353)
T PF00930_consen 244 GPDGNEFLWISERDGYRHLYLYDLDGGKP-RQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKC 322 (353)
T ss_dssp TTTSSEEEEEEETTSSEEEEEEETTSSEE-EESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEE
T ss_pred cCCCCEEEEEEEcCCCcEEEEEcccccce-eccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEe
Confidence 3 344444444554 2566667666654 3555 5555644 566766 45555543 3566667773445566
Q ss_pred ecccCCcceEEEEEcCCCCEEEEEe
Q 001349 1059 LQTGTSGKVQCMALDDNEEFLVIGT 1083 (1094)
Q Consensus 1059 l~~~h~~~I~~l~~Spdg~~L~sgs 1083 (1094)
+. ...+.-..+.|||+|++++-..
T Consensus 323 LT-~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 323 LT-CEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp SS-TTSSTTEEEEE-TTSSEEEEEE
T ss_pred cc-CCCCCceEEEECCCCCEEEEEE
Confidence 63 2222226999999999887443
No 382
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=7.6e-05 Score=90.66 Aligned_cols=46 Identities=28% Similarity=0.661 Sum_probs=41.8
Q ss_pred CceeccCccccccC-----cEEcCCcccccHHhHHHHHHhCCCCCCCCCcCC
Q 001349 162 KDFVCPITTHIFDD-----PVTLETGQTYERRAIQEWIERGNSSCPITRQKL 208 (1094)
Q Consensus 162 ~~~~CpIc~~~~~d-----Pv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~ 208 (1094)
.+-.|+||.+.|.. |-.++|||.|+..|+..|+++ ..+||.||..+
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~ 340 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVL 340 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhh
Confidence 37899999999999 788999999999999999999 66899999844
No 383
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.32 E-value=0.00015 Score=86.06 Aligned_cols=191 Identities=12% Similarity=0.153 Sum_probs=122.8
Q ss_pred eeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEe
Q 001349 846 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLR 925 (1094)
Q Consensus 846 ~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~ 925 (1094)
+..++|..|+...+|++|+-+.++|+.|+..|.|+++++.+|. ..-....|.++|+.+. -+.||...
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~-~e~s~ncH~SavT~ve-------Ps~dgs~~----- 1158 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS-MEESVNCHQSAVTLVE-------PSVDGSTQ----- 1158 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcc-cccccccccccccccc-------ccCCccee-----
Confidence 4567788899999999999999999999999999999999985 2223334566666665 45555542
Q ss_pred CCeEEEEcCCCCceEEEEeCCEEEEEEcC-CeEEEEECCC-CceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCC
Q 001349 926 NGKTKLLNSSKYPKCLALVQGKVYCGCQD-GAIQEIDLAT-GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG 1003 (1094)
Q Consensus 926 ~g~i~l~~~~~~v~~l~~s~~~l~sgs~D-g~I~iwDl~~-~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg 1003 (1094)
+.+.+.. --..+|++.. +... +.+ ..-.++.|+.....-+.|...+
T Consensus 1159 ----------------------Ltsss~S~PlsaLW~~~s~~~~~------Hsf----~ed~~vkFsn~~q~r~~gt~~d 1206 (1516)
T KOG1832|consen 1159 ----------------------LTSSSSSSPLSALWDASSTGGPR------HSF----DEDKAVKFSNSLQFRALGTEAD 1206 (1516)
T ss_pred ----------------------eeeccccCchHHHhccccccCcc------ccc----cccceeehhhhHHHHHhccccc
Confidence 2222222 2456788754 2222 122 2345788876544433333333
Q ss_pred CEEEEEECCCCeEEEEe-cC----CCCEEEEEEeCC-EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCC
Q 001349 1004 AAVKMWSTSNYNMVGSL-PT----LSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEE 1077 (1094)
Q Consensus 1004 ~~I~iwd~~~~~~~~~~-~~----~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~ 1077 (1094)
...+||+.++.++.++ .. ...-+...|+|+ .++. .|| .+||++..+.++.|. .....+ .-.|+|.|.
T Consensus 1207 -~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl--ndG--vLWDvR~~~aIh~FD-~ft~~~-~G~FHP~g~ 1279 (1516)
T KOG1832|consen 1207 -DALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL--NDG--VLWDVRIPEAIHRFD-QFTDYG-GGGFHPSGN 1279 (1516)
T ss_pred -ceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe--eCc--eeeeeccHHHHhhhh-hheecc-cccccCCCc
Confidence 7999999998877663 21 222367788887 3332 345 479999888777773 222222 234899998
Q ss_pred EEEEEeCCCcEEEEeC
Q 001349 1078 FLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1078 ~L~sgs~DG~I~iWdl 1093 (1094)
-++.-+ .|||+
T Consensus 1280 eVIINS-----EIwD~ 1290 (1516)
T KOG1832|consen 1280 EVIINS-----EIWDM 1290 (1516)
T ss_pred eEEeec-----hhhhh
Confidence 888766 36765
No 384
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.30 E-value=0.003 Score=73.59 Aligned_cols=74 Identities=16% Similarity=0.208 Sum_probs=62.6
Q ss_pred cCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 001349 811 SENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE 888 (1094)
Q Consensus 811 ~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~ 888 (1094)
.....|.|++++|+ .++.|+.||+|.+||...+. ..+..+.-..+.++|+|+|..+++|+..|.+.+||+.-+.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~----t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGV----TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCe----eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 56789999999995 99999999999999998772 2222345567899999999999999999999999997754
No 385
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.27 E-value=0.13 Score=59.93 Aligned_cols=271 Identities=10% Similarity=0.070 Sum_probs=122.6
Q ss_pred cccccccCcEEEEeeCCCCeEEEeCCcceeecccCCCcEEEEEEeCCEEEEEECCCeEEEEecCCC-------cceeEEE
Q 001349 778 YSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGS-------ILHLIQQ 850 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~-------~~~~~~~ 850 (1094)
...++++..-++.|-..|.|.||.+......-......-....|.+ ....++.-.+-|+... .+.+..-
T Consensus 6 ~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 6 HVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRR----FSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp EEEEETTTTEEEEEETTS-EEEEEEEE------------------S------GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred EEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCccccc----ccccCCCcceEEehhhCCcccccccCchhh
Confidence 3445566667777777888888777632111100000111111111 0001111122233211 1344555
Q ss_pred ecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEeccc-------CccceeeeecCceEEEeeCCCeEEEE
Q 001349 851 IREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDI-------KDQIQNLAVSNSILCFIPQGAGIKVH 923 (1094)
Q Consensus 851 l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~-------~~~V~~v~~~~~~~~fspdg~~l~~~ 923 (1094)
++...+.|++++.| |=-+++.|..+|++.|.|++............ ...+.++. |+. ...
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ie-------F~v-----m~~ 148 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIE-------FSV-----MTL 148 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEE-------EEE-----EE-
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEE-------EEE-----Eec
Confidence 56668999999997 55699999999999999998865322221111 11222332 210 000
Q ss_pred EeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECC--C-CceeEEeccceeecCCCCCeEEEEE-eCC-------
Q 001349 924 LRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLA--T-GTFATIQTGHRKLLGKANPVHALQV-HNG------- 992 (1094)
Q Consensus 924 ~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~--~-~~~~~~~~~~~~~~~h~~~V~sl~f-s~~------- 992 (1094)
..|+...+ .+++|+..|.+.+|.+. . +.....+. .....+.++|..+.. +.+
T Consensus 149 ~~D~ySSi---------------~L~vGTn~G~v~~fkIlp~~~g~f~v~~~--~~~~~~~~~i~~I~~i~~~~G~~a~A 211 (395)
T PF08596_consen 149 GGDGYSSI---------------CLLVGTNSGNVLTFKILPSSNGRFSVQFA--GATTNHDSPILSIIPINADTGESALA 211 (395)
T ss_dssp TTSSSEEE---------------EEEEEETTSEEEEEEEEE-GGG-EEEEEE--EEE--SS----EEEEEETTT--B-B-
T ss_pred CCCcccce---------------EEEEEeCCCCEEEEEEecCCCCceEEEEe--eccccCCCceEEEEEEECCCCCcccC
Confidence 00111100 37788888888888664 1 22221111 111234455555442 211
Q ss_pred --------------ccEEEEEECCCCEEEEEECCCCeEEEEecCC-CCEEEEEEe-------CCEEEEEEcCCeEEEEEC
Q 001349 993 --------------LVYTASTSLDGAAVKMWSTSNYNMVGSLPTL-SEVRAMVVS-------SELVYLGCKGGTVEIWDQ 1050 (1094)
Q Consensus 993 --------------~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~-~~v~~l~~s-------pd~l~sgs~dg~I~vwd~ 1050 (1094)
.-+++.++. +.++++...+.+........ .....+.+- ...|++-..+|.|++|.+
T Consensus 212 t~~~~~~l~~g~~i~g~vVvvSe--~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SL 289 (395)
T PF08596_consen 212 TISAMQGLSKGISIPGYVVVVSE--SDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSL 289 (395)
T ss_dssp BHHHHHGGGGT----EEEEEE-S--SEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEET
T ss_pred chhHhhccccCCCcCcEEEEEcc--cceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEEC
Confidence 114444443 47999999887766554422 222333342 116788889999999999
Q ss_pred CCCcEEEEeccc---CCcceEEEEEcCCCCEEEEEeC
Q 001349 1051 KRQIRIETLQTG---TSGKVQCMALDDNEEFLVIGTS 1084 (1094)
Q Consensus 1051 ~t~~~~~~l~~~---h~~~I~~l~~Spdg~~L~sgs~ 1084 (1094)
..-+.+..+... +...+....++++|+.++-.+.
T Consensus 290 P~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 290 PSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGP 326 (395)
T ss_dssp TT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SS
T ss_pred CCchHhhcccCCCccccccccccEECCCCCEEEEeCc
Confidence 998888777422 1224566778999997766554
No 386
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.21 E-value=0.019 Score=68.68 Aligned_cols=203 Identities=9% Similarity=0.005 Sum_probs=118.5
Q ss_pred EecCCCEEEEEe-CCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeC----CeEEEEcCCCC
Q 001349 863 ILQSGEMLYSGS-LDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRN----GKTKLLNSSKY 937 (1094)
Q Consensus 863 fspdg~~LaSgs-~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~----g~i~l~~~~~~ 937 (1094)
++|||+.+...+ ..+.+.+.|..+.+ .......... +..+.++++|+++.+.+.+ .++...+....
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etme--V~~qV~Vdgn-------pd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~ 270 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETME--VAWQVMVDGN-------LDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAER 270 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccce--EEEEEEeCCC-------cccceECCCCCEEEEeccCcccCcceeeeccccC
Confidence 345665443322 24556666766543 1111111222 2334589999998888643 23344443333
Q ss_pred ceEEEEe---------CCE-EEEEEcCCeEEEEECCC----C-ceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECC
Q 001349 938 PKCLALV---------QGK-VYCGCQDGAIQEIDLAT----G-TFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLD 1002 (1094)
Q Consensus 938 v~~l~~s---------~~~-l~sgs~Dg~I~iwDl~~----~-~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~D 1002 (1094)
-..+.|+ +|+ ... .++.|.++|.++ + ..... ..-......+.++||+.+++.++.-
T Consensus 271 d~~vvfni~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~y-------IPVGKsPHGV~vSPDGkylyVankl 341 (635)
T PRK02888 271 DWVVVFNIARIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRY-------VPVPKNPHGVNTSPDGKYFIANGKL 341 (635)
T ss_pred ceEEEEchHHHHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEE-------EECCCCccceEECCCCCEEEEeCCC
Confidence 3455554 232 222 367899999988 3 33221 1223567789999999998888765
Q ss_pred CCEEEEEECCCCe------------EEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCC----------CcEEEE
Q 001349 1003 GAAVKMWSTSNYN------------MVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKR----------QIRIET 1058 (1094)
Q Consensus 1003 g~~I~iwd~~~~~------------~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t----------~~~~~~ 1058 (1094)
..+|.+.|+.+.+ .+....-+......+|+++ ...+-.-|..|..||+.+ ...+..
T Consensus 342 S~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k 421 (635)
T PRK02888 342 SPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQK 421 (635)
T ss_pred CCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceec
Confidence 5699999998755 2444444555667788887 344456789999999876 233443
Q ss_pred ec----ccCCcceEEEEEcCCCCEEEEEe
Q 001349 1059 LQ----TGTSGKVQCMALDDNEEFLVIGT 1083 (1094)
Q Consensus 1059 l~----~~h~~~I~~l~~Spdg~~L~sgs 1083 (1094)
+. .||.....+=.-.|||++|++.+
T Consensus 422 ~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 422 LDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred ccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 32 23322222223367888888764
No 387
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.16 E-value=0.013 Score=72.56 Aligned_cols=131 Identities=10% Similarity=0.159 Sum_probs=88.6
Q ss_pred EcCCeEEEEECCCCceeEEeccceeecCCC-CCeEEEEEe------CCccEEEEEECCCCEEEEEECCCC--eEEE----
Q 001349 952 CQDGAIQEIDLATGTFATIQTGHRKLLGKA-NPVHALQVH------NGLVYTASTSLDGAAVKMWSTSNY--NMVG---- 1018 (1094)
Q Consensus 952 s~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~-~~V~sl~fs------~~~~~las~s~Dg~~I~iwd~~~~--~~~~---- 1018 (1094)
.....|+-.|+..|+.+..+. .|. .+|..++-. .+...+++.+ ++.+..||.+-. +++.
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~------~~~~~~v~~~~p~~K~aqlt~e~tflGls--~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWK------VHDDIPVVDIAPDSKFAQLTNEQTFLGLS--DNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred CCCCceEEEecCCCcEEEEee------cCCCcceeEecccccccccCCCceEEEEC--CCceEEeccCCCCCceeecccc
Confidence 355778889999999885433 333 235555432 1222333333 347999999853 2332
Q ss_pred EecCCCCEEEEEEeCC-EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1019 SLPTLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1019 ~~~~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
.+.....++|++.+.+ +|++|+.+|.||+||. .|+.-.+...+-..+|.+|..+.||++|++.+.. .+.+++
T Consensus 573 ~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-yLlLi~ 645 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCKT-YLLLID 645 (794)
T ss_pred ccccCCCceEEEecCCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-eEEEEE
Confidence 2235677899999988 8999999999999995 4444555545777899999999999998877644 455544
No 388
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.14 E-value=0.055 Score=67.89 Aligned_cols=228 Identities=11% Similarity=0.100 Sum_probs=133.6
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC
Q 001349 855 TKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS 934 (1094)
Q Consensus 855 ~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~ 934 (1094)
.+.|.++.|..+++-++.+..+|.|.+-|..+....+.... ...|.++. |+||+..++..+..+++.+...
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~v--d~GI~aas-------wS~Dee~l~liT~~~tll~mT~ 138 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNV--DNGISAAS-------WSPDEELLALITGRQTLLFMTK 138 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeec--cCceEEEe-------ecCCCcEEEEEeCCcEEEEEec
Confidence 36899999999999999999999999999888765554443 45566666 9999999988888777655443
Q ss_pred CCCc---eEEEEe---CCEEEEEEcCCeEEEEECCCCceeEEe-ccceeecC---CCCCeEEEEEeCCccEEEEEE---C
Q 001349 935 SKYP---KCLALV---QGKVYCGCQDGAIQEIDLATGTFATIQ-TGHRKLLG---KANPVHALQVHNGLVYTASTS---L 1001 (1094)
Q Consensus 935 ~~~v---~~l~~s---~~~l~sgs~Dg~I~iwDl~~~~~~~~~-~~~~~~~~---h~~~V~sl~fs~~~~~las~s---~ 1001 (1094)
.-.+ +.+... .+..+.++....=.-+.-..|+..... ..+.+..+ ..+.=+++.|-.||.+++... .
T Consensus 139 ~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~ 218 (1265)
T KOG1920|consen 139 DFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESE 218 (1265)
T ss_pred cccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEecc
Confidence 2111 111000 123444444332222221222111000 00001111 112335788999998887732 2
Q ss_pred CC-CEEEEEECCCCeEEEEe-cCCCCEEEEEEeCC--EEEEE---EcCCeEEEEECCCC---cEEEEecccCCcceEEEE
Q 001349 1002 DG-AAVKMWSTSNYNMVGSL-PTLSEVRAMVVSSE--LVYLG---CKGGTVEIWDQKRQ---IRIETLQTGTSGKVQCMA 1071 (1094)
Q Consensus 1002 Dg-~~I~iwd~~~~~~~~~~-~~~~~v~~l~~spd--~l~sg---s~dg~I~vwd~~t~---~~~~~l~~~h~~~I~~l~ 1071 (1094)
.| +.|++||.. |.+-.+- +..+.-.+++|-|. .+++- +.|+.|.+|..+.- .-...+ ......|..++
T Consensus 219 ~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~-p~de~~ve~L~ 296 (1265)
T KOG1920|consen 219 TGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPF-PLDEKEVEELA 296 (1265)
T ss_pred CCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCC-cccccchheee
Confidence 23 799999987 4332211 12344457888886 34432 35678999986532 111112 11223499999
Q ss_pred EcCCCCEEEE---EeCCCcEEEEeC
Q 001349 1072 LDDNEEFLVI---GTSDGRIQAWGL 1093 (1094)
Q Consensus 1072 ~Spdg~~L~s---gs~DG~I~iWdl 1093 (1094)
|+.++..|++ ......|++|-+
T Consensus 297 Wns~sdiLAv~~~~~e~~~v~lwt~ 321 (1265)
T KOG1920|consen 297 WNSNSDILAVVTSNLENSLVQLWTT 321 (1265)
T ss_pred ecCCCCceeeeecccccceEEEEEe
Confidence 9999999987 444455999965
No 389
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.11 E-value=0.57 Score=50.51 Aligned_cols=263 Identities=11% Similarity=0.145 Sum_probs=149.4
Q ss_pred CCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEE
Q 001349 813 NGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCV 892 (1094)
Q Consensus 813 ~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~ 892 (1094)
.+-+..+.++.++.+.+..+.-++|.|+.+.....+..+-.-.+.-.++.. .|++...+..|.-.-+.|+.+.+...+
T Consensus 86 ~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~l 163 (370)
T COG5276 86 RDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQL 163 (370)
T ss_pred hhhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCcee
Confidence 456677888889888888999999999988642222222112233344444 588999998666688899887542222
Q ss_pred Eec-cc-CccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC--------------CCCceEEEEeCCEEEEEEcCCe
Q 001349 893 QVH-DI-KDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS--------------SKYPKCLALVQGKVYCGCQDGA 956 (1094)
Q Consensus 893 ~~~-~~-~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~--------------~~~v~~l~~s~~~l~sgs~Dg~ 956 (1094)
... .. ......+++ .|++-.+..+++.+++.+. ...+.++..++++.+..-.+--
T Consensus 164 agrya~~~~d~~~v~I---------SGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~eg 234 (370)
T COG5276 164 AGRYALPGGDTHDVAI---------SGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEG 234 (370)
T ss_pred eeeeccCCCCceeEEE---------ecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccc
Confidence 211 11 111133332 2444444455555555542 3367777778888777777777
Q ss_pred EEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCe---EEEEecC-CCCEEEEEEe
Q 001349 957 IQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN---MVGSLPT-LSEVRAMVVS 1032 (1094)
Q Consensus 957 I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~---~~~~~~~-~~~v~~l~~s 1032 (1094)
+.+-|..+.+....+.... ......++.+..+.+..|++-+. +-+.+-|+.+.. ....+.. +..-..+..+
T Consensus 235 vlivd~s~~ssp~~~gsye--t~~p~~~s~v~Vs~~~~Yvadga---~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay 309 (370)
T COG5276 235 VLIVDVSGPSSPTVFGSYE--TSNPVSISTVPVSGEYAYVADGA---KGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY 309 (370)
T ss_pred eEEEecCCCCCceEeeccc--cCCcccccceecccceeeeeccc---cCceeEeccCCCCCchhccccCCCccccceEEe
Confidence 7788877666443322110 01112334455566666666552 234555554322 2222322 2245566667
Q ss_pred CCEEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1033 SELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1033 pd~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
.+++..+..+ +..+-|....+..... .+....+.+.+.+-+.+.+.+...+|-+.||+.
T Consensus 310 ~~y~yiadkn-~g~vV~~s~~s~m~~~-~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 310 GNYNYIADKN-TGAVVDASPPSMMDKR-PGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred cCeeEeccCC-ceEEEeCCChhhcccc-cCcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence 7777666655 5555565544333222 233334455555556778889999999999985
No 390
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.10 E-value=0.00013 Score=84.17 Aligned_cols=197 Identities=18% Similarity=0.218 Sum_probs=122.5
Q ss_pred CCcEEEEEEeC--C--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEec-CCCEEEEEeC----CCcEEEEE
Q 001349 813 NGKVLSIACFR--D--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQ-SGEMLYSGSL----DKTARVWS 883 (1094)
Q Consensus 813 ~~~V~~l~fsp--d--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fsp-dg~~LaSgs~----DgtI~vWd 883 (1094)
...+.|++++- + .++.|..+|.|.+-.+....-..-....+|....++++|++ |.+.||.|-+ |..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 34566776654 2 78999999999998876542222344567889999999998 6777877632 56799999
Q ss_pred CCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEe--CCEEEEEEcCCeEEEEE
Q 001349 884 IGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALV--QGKVYCGCQDGAIQEID 961 (1094)
Q Consensus 884 i~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s--~~~l~sgs~Dg~I~iwD 961 (1094)
+.++-. .|..... |+. +. .+ ...++.+. ...+.+|.....++++|
T Consensus 136 i~s~lt---------vPke~~~-------fs~-~~------l~----------gqns~cwlrd~klvlaGm~sr~~~ifd 182 (783)
T KOG1008|consen 136 INSLLT---------VPKESPL-------FSS-ST------LD----------GQNSVCWLRDTKLVLAGMTSRSVHIFD 182 (783)
T ss_pred cccccC---------CCccccc-------ccc-cc------cc----------CccccccccCcchhhcccccchhhhhh
Confidence 988521 1111111 222 10 00 01122222 12377888888999999
Q ss_pred CCCCceeEEeccceeecCCCCCeEEEEEeC-CccEEEEEECCCCEEEEEEC-CC-CeEEEEecCC-----CCEEEEEEeC
Q 001349 962 LATGTFATIQTGHRKLLGKANPVHALQVHN-GLVYTASTSLDGAAVKMWST-SN-YNMVGSLPTL-----SEVRAMVVSS 1033 (1094)
Q Consensus 962 l~~~~~~~~~~~~~~~~~h~~~V~sl~fs~-~~~~las~s~Dg~~I~iwd~-~~-~~~~~~~~~~-----~~v~~l~~sp 1033 (1094)
++..... ...-.+..+..+.++| ...|+++.. || .|.+||. ++ ..++..+.+. ..+..++|+|
T Consensus 183 lRqs~~~-------~~svnTk~vqG~tVdp~~~nY~cs~~-dg-~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycP 253 (783)
T KOG1008|consen 183 LRQSLDS-------VSSVNTKYVQGITVDPFSPNYFCSNS-DG-DIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCP 253 (783)
T ss_pred hhhhhhh-------hhhhhhhhcccceecCCCCCceeccc-cC-ceeeccchhhhccHHHHHhhCCCCcccceeeEEecc
Confidence 9843321 1111223566677777 667777765 65 8999994 32 2233333332 3489999999
Q ss_pred C---EEEEEEc-CCeEEEEECC
Q 001349 1034 E---LVYLGCK-GGTVEIWDQK 1051 (1094)
Q Consensus 1034 d---~l~sgs~-dg~I~vwd~~ 1051 (1094)
. .+++.+. .++|+.+|+.
T Consensus 254 trtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 254 TRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred CCcchhhhhccCcceEEEeccc
Confidence 7 4555554 5889999975
No 391
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.07 E-value=0.15 Score=59.48 Aligned_cols=223 Identities=12% Similarity=0.114 Sum_probs=120.2
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEE-EEe-------------cccCccceeeeecCceEEEeeCCCeEEE
Q 001349 857 AVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHC-VQV-------------HDIKDQIQNLAVSNSILCFIPQGAGIKV 922 (1094)
Q Consensus 857 ~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~-~~~-------------~~~~~~V~~v~~~~~~~~fspdg~~l~~ 922 (1094)
.|+.|.|+++..-|+.|...|.|-||.+..++... ... ......+..+.-. ..|+=+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r-----~~~~~~---- 73 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDR-----APPSLK---- 73 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG-------TT-S----
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhh-----CCcccc----
Confidence 58899999998899999999999999876643111 000 0011112222100 000000
Q ss_pred EEeCCe--EEEEc-CCCCceEEEEeC-CEEEEEEcCCeEEEEECCCCceeEEeccce--eecCCCCCeEEEEEe-----C
Q 001349 923 HLRNGK--TKLLN-SSKYPKCLALVQ-GKVYCGCQDGAIQEIDLATGTFATIQTGHR--KLLGKANPVHALQVH-----N 991 (1094)
Q Consensus 923 ~~~~g~--i~l~~-~~~~v~~l~~s~-~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~--~~~~h~~~V~sl~fs-----~ 991 (1094)
+|- ..+++ ..+.|.+++.++ |.+++|+.+|.+.+.|++....+....-.. .-......|+++.|. .
T Consensus 74 ---~gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~ 150 (395)
T PF08596_consen 74 ---EGFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGG 150 (395)
T ss_dssp ---EEEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TT
T ss_pred ---cccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCC
Confidence 010 12222 357899999987 999999999999999998887775422211 111234568888885 3
Q ss_pred Cc---cEEEEEECCCCEEEEEECCC---CeE----EEEe-cCCCCEEEEE-EeC----------------------CEEE
Q 001349 992 GL---VYTASTSLDGAAVKMWSTSN---YNM----VGSL-PTLSEVRAMV-VSS----------------------ELVY 1037 (1094)
Q Consensus 992 ~~---~~las~s~Dg~~I~iwd~~~---~~~----~~~~-~~~~~v~~l~-~sp----------------------d~l~ 1037 (1094)
|+ ..+..|...| .+.+|.+-- +.. .... .+.+.+..+. ++. ..++
T Consensus 151 D~ySSi~L~vGTn~G-~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~v 229 (395)
T PF08596_consen 151 DGYSSICLLVGTNSG-NVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYV 229 (395)
T ss_dssp SSSEEEEEEEEETTS-EEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEE
T ss_pred CcccceEEEEEeCCC-CEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEE
Confidence 33 5666666665 888887641 211 1111 2445555544 221 1355
Q ss_pred EEEcCCeEEEEECCCCcEEEEecccCCcceEEEEE-----cCCCCEEEEEeCCCcEEEEeC
Q 001349 1038 LGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMAL-----DDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1038 sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~-----Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
+...+..++|+...+.+..+... ...-....+.+ ...+..|++-..+|.|+++.+
T Consensus 230 VvvSe~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SL 289 (395)
T PF08596_consen 230 VVVSESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSL 289 (395)
T ss_dssp EEE-SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEET
T ss_pred EEEcccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEEC
Confidence 56667889999999888777664 22223334445 235678889999999999986
No 392
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.00038 Score=75.24 Aligned_cols=46 Identities=28% Similarity=0.648 Sum_probs=39.8
Q ss_pred CceeccCccccccCc-------------EEcCCcccccHHhHHHHHHhCCCCCCCCCcCC
Q 001349 162 KDFVCPITTHIFDDP-------------VTLETGQTYERRAIQEWIERGNSSCPITRQKL 208 (1094)
Q Consensus 162 ~~~~CpIc~~~~~dP-------------v~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~ 208 (1094)
+|-.|.||++-|..| --++|||.+=-.|+..|+++ ..+||.||.++
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPICr~p~ 344 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPICRRPV 344 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCcccCcc
Confidence 378999999985443 57899999999999999998 66999999985
No 393
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.02 E-value=0.1 Score=62.72 Aligned_cols=97 Identities=14% Similarity=0.154 Sum_probs=73.0
Q ss_pred CccEEEEEECCCCEEEEEECCC-----CeEEEEecCCCCEEEEEEeCC--EEE-EEEcCCeEEEEECCCCcE--------
Q 001349 992 GLVYTASTSLDGAAVKMWSTSN-----YNMVGSLPTLSEVRAMVVSSE--LVY-LGCKGGTVEIWDQKRQIR-------- 1055 (1094)
Q Consensus 992 ~~~~las~s~Dg~~I~iwd~~~-----~~~~~~~~~~~~v~~l~~spd--~l~-sgs~dg~I~vwd~~t~~~-------- 1055 (1094)
++.+.... ++.|.+.|..+ ...+..+.-+.....+.++|| +++ ++..+++|.|+|+.+.+.
T Consensus 287 dGK~~~V~---gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~ 363 (635)
T PRK02888 287 AGKFKTIG---GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKP 363 (635)
T ss_pred CCCEEEEC---CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCc
Confidence 45544432 35899999998 567778888889999999999 444 455689999999988552
Q ss_pred ----EEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1056 ----IETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1056 ----~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
+.....| ......+|+++|....|---|..|-.|++
T Consensus 364 ~~~vvaevevG--lGPLHTaFDg~G~aytslf~dsqv~kwn~ 403 (635)
T PRK02888 364 RDAVVAEPELG--LGPLHTAFDGRGNAYTTLFLDSQIVKWNI 403 (635)
T ss_pred cceEEEeeccC--CCcceEEECCCCCEEEeEeecceeEEEeh
Confidence 4444322 23456789999998888888999999997
No 394
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=96.88 E-value=0.00035 Score=76.52 Aligned_cols=35 Identities=11% Similarity=0.448 Sum_probs=31.5
Q ss_pred CCceeccCccccccCcEEcCCcccccHHhHHHHHH
Q 001349 161 PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIE 195 (1094)
Q Consensus 161 ~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~ 195 (1094)
++++.||||...|+||++++|||+.|+.|-...+.
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILV 36 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence 45899999999999999999999999999886554
No 395
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.88 E-value=0.52 Score=55.50 Aligned_cols=209 Identities=14% Similarity=0.125 Sum_probs=102.6
Q ss_pred eEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEec-c-cCccc-----eeeee
Q 001349 834 TIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVH-D-IKDQI-----QNLAV 906 (1094)
Q Consensus 834 ~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~-~-~~~~V-----~~v~~ 906 (1094)
.|+||+..+. .+..+.-..+.|.++.|+.+ ..|+....||+++++|+.... ..... . ....| ....+
T Consensus 62 ~I~iys~sG~---ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~--~fsl~~~i~~~~v~e~~i~~~~~ 135 (410)
T PF04841_consen 62 SIQIYSSSGK---LLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEF--QFSLGEEIEEEKVLECRIFAIWF 135 (410)
T ss_pred EEEEECCCCC---EeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCce--eechhhhccccCccccccccccc
Confidence 5999998776 44444433489999999875 556677899999999997532 11110 0 01111 11121
Q ss_pred cCceEE-EeeCCCeEEEEEeCCeEEEEcCCCCceEE---EEeC--CEEEEEEcCCeEEEEECCCCceeEEeccce-eecC
Q 001349 907 SNSILC-FIPQGAGIKVHLRNGKTKLLNSSKYPKCL---ALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHR-KLLG 979 (1094)
Q Consensus 907 ~~~~~~-fspdg~~l~~~~~~g~i~l~~~~~~v~~l---~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~-~~~~ 979 (1094)
..+.++ ...+++...+.+.+...+........... ...+ ..+...+.++.+.+.-.. +..+....... ....
T Consensus 136 ~~~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~-g~~i~~i~~~~~~~i~ 214 (410)
T PF04841_consen 136 YKNGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLAN-GETIYIIDENSFKQID 214 (410)
T ss_pred CCCCEEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEec-CCEEEEEEcccccccc
Confidence 111111 22222222222222111100000000000 0000 011222233333332222 22221111000 0011
Q ss_pred CCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecC--CCCEEEEEEeCC-EEEEEEcCCeEEEEECC
Q 001349 980 KANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT--LSEVRAMVVSSE-LVYLGCKGGTVEIWDQK 1051 (1094)
Q Consensus 980 h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~--~~~v~~l~~spd-~l~sgs~dg~I~vwd~~ 1051 (1094)
..+++..+++||++.++|....+| .+.+.+..-.+....+.. ......|.|+++ -++..- ...|.++...
T Consensus 215 ~~~~i~~iavSpng~~iAl~t~~g-~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~-~~~l~lvg~~ 287 (410)
T PF04841_consen 215 SDGPIIKIAVSPNGKFIALFTDSG-NLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW-EDELLLVGPD 287 (410)
T ss_pred CCCCeEEEEECCCCCEEEEEECCC-CEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe-CCEEEEECCC
Confidence 235899999999999999998886 788888765666666653 366778888886 333332 4456555543
No 396
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.86 E-value=0.16 Score=57.93 Aligned_cols=130 Identities=14% Similarity=0.228 Sum_probs=87.9
Q ss_pred CeEEEEECCCC-----ceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCe-EEEE--ecCCCCE
Q 001349 955 GAIQEIDLATG-----TFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN-MVGS--LPTLSEV 1026 (1094)
Q Consensus 955 g~I~iwDl~~~-----~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~-~~~~--~~~~~~v 1026 (1094)
|.|.++++... +..... -....++|++++...+. ++++. |+.|.+|++...+ .... +.....+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~-----~~~~~g~V~ai~~~~~~-lv~~~---g~~l~v~~l~~~~~l~~~~~~~~~~~i 132 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIH-----STEVKGPVTAICSFNGR-LVVAV---GNKLYVYDLDNSKTLLKKAFYDSPFYI 132 (321)
T ss_dssp EEEEEEEECSS-----EEEEEE-----EEEESS-EEEEEEETTE-EEEEE---TTEEEEEEEETTSSEEEEEEE-BSSSE
T ss_pred cEEEEEEEEcccccceEEEEEE-----EEeecCcceEhhhhCCE-EEEee---cCEEEEEEccCcccchhhheecceEEE
Confidence 88999999884 222111 12235789999888544 55554 4699999998776 4332 2356689
Q ss_pred EEEEEeCCEEEEEEcCCeEEEEECCC-CcEEEEe-cccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1027 RAMVVSSELVYLGCKGGTVEIWDQKR-QIRIETL-QTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1027 ~~l~~spd~l~sgs~dg~I~vwd~~t-~~~~~~l-~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
.++....+++++|.....+.++.... +..+..+ .......++++.|-+|++.++.+..+|.|.++..
T Consensus 133 ~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~ 201 (321)
T PF03178_consen 133 TSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRY 201 (321)
T ss_dssp EEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE
T ss_pred EEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEE
Confidence 99999999999999888888774432 2223222 2233457899999877789999999999998864
No 397
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.00064 Score=75.30 Aligned_cols=48 Identities=15% Similarity=0.516 Sum_probs=40.4
Q ss_pred eeccCccccccCc--E-EcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCC
Q 001349 164 FVCPITTHIFDDP--V-TLETGQTYERRAIQEWIERGNSSCPITRQKLSST 211 (1094)
Q Consensus 164 ~~CpIc~~~~~dP--v-~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~ 211 (1094)
+.|-||+|-|++- + ++||+|.|=..||..|+.+....||+|++.....
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTD 280 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCC
Confidence 5999999999853 3 5799999999999999998655699999865443
No 398
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.84 E-value=1.1 Score=54.77 Aligned_cols=59 Identities=17% Similarity=0.265 Sum_probs=44.5
Q ss_pred CEEEEEECCCCeEEEEecCCCC-E-EEEEEeCCEEEEEEcCCeEEEEECCCCcEEEEeccc
Q 001349 1004 AAVKMWSTSNYNMVGSLPTLSE-V-RAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTG 1062 (1094)
Q Consensus 1004 ~~I~iwd~~~~~~~~~~~~~~~-v-~~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~ 1062 (1094)
+.|.-||+.+++.......... . ..+....+.++.++.+|.++.+|..+|+.+..+..+
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 3688899999998887764322 1 123445567788888999999999999999988543
No 399
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.83 E-value=0.47 Score=52.62 Aligned_cols=227 Identities=13% Similarity=0.114 Sum_probs=128.3
Q ss_pred cCcEEEEeeCCCCeEEEeCC-cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEE-----------
Q 001349 784 EMVKVLSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQ----------- 849 (1094)
Q Consensus 784 d~~~l~s~s~dg~I~vWd~~-~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~----------- 849 (1094)
.+..++.|..+| +.+++.. ........+...|..+...++ .+++- .||.+.++++..-......
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~~~~ 83 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKSRSL 83 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEE-cCCccEEEEchhhccccccccccccccccc
Confidence 477899998888 8888883 222222234445999999985 43333 3599999998754211100
Q ss_pred -EecccCCCeEEEE--EecCCCEEEEEeCCCcEEEEECCCC--ce-EEEEecccCccceeeeecCceEEEeeCCCeEEEE
Q 001349 850 -QIREHTKAVTGLA--ILQSGEMLYSGSLDKTARVWSIGNE--EI-HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVH 923 (1094)
Q Consensus 850 -~l~~H~~~V~sv~--fspdg~~LaSgs~DgtI~vWdi~~~--~~-~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~ 923 (1094)
.-......+...+ -...+...+.....++|.+|.+... .. .........+.+..+.+.++.+++.....+..+.
T Consensus 84 ~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~f~~id 163 (275)
T PF00780_consen 84 PTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSKGFYLID 163 (275)
T ss_pred cccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCCceEEEe
Confidence 0112334455544 1123333344444558999888764 23 4555566778899999888888777666555555
Q ss_pred EeCCeEE-EEcCC-------------CCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEE
Q 001349 924 LRNGKTK-LLNSS-------------KYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQV 989 (1094)
Q Consensus 924 ~~~g~i~-l~~~~-------------~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~f 989 (1094)
..++... +.+.. ..+..+...++.++.+. |..-.+.|. .|.... ...-.+ .....++++
T Consensus 164 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~-~~~g~fv~~-~G~~~r--~~~i~W---~~~p~~~~~ 236 (275)
T PF00780_consen 164 LNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY-DNIGVFVNK-NGEPSR--KSTIQW---SSAPQSVAY 236 (275)
T ss_pred cCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe-cceEEEEcC-CCCcCc--ccEEEc---CCchhEEEE
Confidence 5444433 33221 12334444445544443 333334443 343321 111111 234556666
Q ss_pred eCCccEEEEEECCCCEEEEEECCCCeEEEEecCC
Q 001349 990 HNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTL 1023 (1094)
Q Consensus 990 s~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~ 1023 (1094)
.. .|++..+.+ .|.||++.+++.++++...
T Consensus 237 ~~--pyli~~~~~--~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 237 SS--PYLIAFSSN--SIEVRSLETGELVQTIPLP 266 (275)
T ss_pred EC--CEEEEECCC--EEEEEECcCCcEEEEEECC
Confidence 43 355555443 7999999999999888743
No 400
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.80 E-value=0.89 Score=49.36 Aligned_cols=208 Identities=11% Similarity=0.082 Sum_probs=104.7
Q ss_pred ecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcceeEEEeccc-CCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 001349 808 VDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREH-TKAVTGLAILQSGEMLYSGSLDKTARVWS 883 (1094)
Q Consensus 808 ~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H-~~~V~sv~fspdg~~LaSgs~DgtI~vWd 883 (1094)
.+.+-...++.++|+|+ ++++....+.|...+.. | +.++.+.-. .+..-.|++..++.++++--.++.+.+.+
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G--~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-G--KVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT-----EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-C--CEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 44555667999999985 77777788888888875 4 345544322 35678899988887777766789999998
Q ss_pred CCCCc--eEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC--CEEEEEEcCCeEEE
Q 001349 884 IGNEE--IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ--GKVYCGCQDGAIQE 959 (1094)
Q Consensus 884 i~~~~--~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~--~~l~sgs~Dg~I~i 959 (1094)
+.... ..... +..+... +.. ..+...-.++|++ +.++++-...-..+
T Consensus 93 ~~~~~~~~~~~~-------~~~~~l~-----~~~-----------------~~N~G~EGla~D~~~~~L~v~kE~~P~~l 143 (248)
T PF06977_consen 93 IDDDTTSLDRAD-------VQKISLG-----FPN-----------------KGNKGFEGLAYDPKTNRLFVAKERKPKRL 143 (248)
T ss_dssp E----TT--EEE-------EEEEE--------S--------------------SS--EEEEEETTTTEEEEEEESSSEEE
T ss_pred Eeccccccchhh-------ceEEecc-----ccc-----------------CCCcceEEEEEcCCCCEEEEEeCCCChhh
Confidence 85432 11110 0011000 000 0112233444432 34444444444444
Q ss_pred EECCC---CceeEEe--ccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCC----------C
Q 001349 960 IDLAT---GTFATIQ--TGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTL----------S 1024 (1094)
Q Consensus 960 wDl~~---~~~~~~~--~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~----------~ 1024 (1094)
|.+.. +...... ............+.++.++|....+..-|...+.|..+| .+|+.+..+.-. .
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~ 222 (248)
T PF06977_consen 144 YEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIP 222 (248)
T ss_dssp EEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---
T ss_pred EEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccC
Confidence 44332 1111110 000001123346789999987554445555667999999 677777666511 3
Q ss_pred CEEEEEEeCC-EEEEEEcCCeEEEE
Q 001349 1025 EVRAMVVSSE-LVYLGCKGGTVEIW 1048 (1094)
Q Consensus 1025 ~v~~l~~spd-~l~sgs~dg~I~vw 1048 (1094)
..-+|+|+++ .++..++-+..++|
T Consensus 223 QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 223 QPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred CccEEEECCCCCEEEEcCCceEEEe
Confidence 5788999998 68888888877765
No 401
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.73 E-value=0.0038 Score=44.72 Aligned_cols=38 Identities=34% Similarity=0.576 Sum_probs=34.6
Q ss_pred eeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 001349 846 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWS 883 (1094)
Q Consensus 846 ~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWd 883 (1094)
.++..+..|...|+++.|++++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 46677788999999999999999999999999999996
No 402
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.0016 Score=80.39 Aligned_cols=73 Identities=25% Similarity=0.479 Sum_probs=66.4
Q ss_pred CCCCCCceeccCccccccCcEEcC-CcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHHHHhC
Q 001349 157 KHTPPKDFVCPITTHIFDDPVTLE-TGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQN 231 (1094)
Q Consensus 157 ~~~~~~~~~CpIc~~~~~dPv~~~-cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~~~~ 231 (1094)
-.++|++|.-||...+|.|||++| .|++-||.-|.+|+-. ..+-|.||.+|+.+.+. ||..|+.-|+.|....
T Consensus 864 l~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs-~~tdPFNR~pLt~d~v~-pn~eLK~kI~~~~~ek 937 (943)
T KOG2042|consen 864 LGDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLS-DCTDPFNREPLTEDMVS-PNEELKAKIRCWIKEK 937 (943)
T ss_pred hccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhc-CCCCccccccCchhhcC-CCHHHHHHHHHHHHHh
Confidence 346899999999999999999997 9999999999999877 44689999999999997 9999999999998754
No 403
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.71 E-value=0.0036 Score=74.45 Aligned_cols=106 Identities=12% Similarity=0.182 Sum_probs=84.1
Q ss_pred EEEEeCCccEEEEEEC---CCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEec
Q 001349 986 ALQVHNGLVYTASTSL---DGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQ 1060 (1094)
Q Consensus 986 sl~fs~~~~~las~s~---Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~ 1060 (1094)
-..|||...+++.++. .|+.|.||- .+|++.+...-+-.+++++|+|. .++.|-.-|.+.+|...+.+. ++..
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~-htv~ 97 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET-HTVV 97 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCcee-eeec
Confidence 3467888777766542 245888883 56777666666667788999999 688888999999999887654 4444
Q ss_pred ccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1061 TGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1061 ~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
..|..+|..+.||++|..|+|+..-|.|.+|.+
T Consensus 98 ~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~ 130 (1416)
T KOG3617|consen 98 ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRY 130 (1416)
T ss_pred cCCCCCceeEEecCCCCeEEEcCCCceeEEEEe
Confidence 679999999999999999999999999999975
No 404
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.66 E-value=0.081 Score=62.20 Aligned_cols=183 Identities=14% Similarity=0.119 Sum_probs=101.1
Q ss_pred cCCCeEEEEEecCCCEEEEEe---CC-CcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeE
Q 001349 854 HTKAVTGLAILQSGEMLYSGS---LD-KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKT 929 (1094)
Q Consensus 854 H~~~V~sv~fspdg~~LaSgs---~D-gtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i 929 (1094)
-...+..-.|+|++..++-.+ .. ..+.++|++++....+.... ..- ....|+|||+.+
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~--g~~-------~~P~fspDG~~l--------- 252 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFN--GNN-------GAPAFSPDGSKL--------- 252 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccC--Ccc-------CCccCCCCCCEE---------
Confidence 345566778999888765442 22 45899999998643333321 111 122399999876
Q ss_pred EEEcCCCCceEEEEeCCEEEEEEcCCe--EEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCE--
Q 001349 930 KLLNSSKYPKCLALVQGKVYCGCQDGA--IQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAA-- 1005 (1094)
Q Consensus 930 ~l~~~~~~v~~l~~s~~~l~sgs~Dg~--I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~-- 1005 (1094)
+++...||. |.++|+.++.... +..-.+.-+.=.|+|+|.+++-.+..++.
T Consensus 253 ------------------~f~~~rdg~~~iy~~dl~~~~~~~-------Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~ 307 (425)
T COG0823 253 ------------------AFSSSRDGSPDIYLMDLDGKNLPR-------LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQ 307 (425)
T ss_pred ------------------EEEECCCCCccEEEEcCCCCccee-------cccCCccccCccCCCCCCEEEEEeCCCCCcc
Confidence 344455554 5566777666321 11111122245678999998888766554
Q ss_pred EEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEE-cCCe--EEEEECCCCcEEEEecccCCcceEEEEEcCCCCEE
Q 001349 1006 VKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGC-KGGT--VEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFL 1079 (1094)
Q Consensus 1006 I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs-~dg~--I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L 1079 (1094)
|.++|...+.. ..+. ....-..-.|+|| +++..+ .+|. |.+.|+.++.....+. +......-.|.++|+.+
T Consensus 308 I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt--~~~~~e~ps~~~ng~~i 384 (425)
T COG0823 308 IYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT--STYLNESPSWAPNGRMI 384 (425)
T ss_pred eEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc--ccccCCCCCcCCCCceE
Confidence 55555555444 3333 2222226678888 444433 3454 6777776665444442 22233444566666655
Q ss_pred EEE
Q 001349 1080 VIG 1082 (1094)
Q Consensus 1080 ~sg 1082 (1094)
...
T Consensus 385 ~~~ 387 (425)
T COG0823 385 MFS 387 (425)
T ss_pred EEe
Confidence 433
No 405
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.65 E-value=0.00083 Score=77.87 Aligned_cols=185 Identities=14% Similarity=0.202 Sum_probs=115.3
Q ss_pred EEEEeeCCCCeEEEeCC----cceeecccCCCcEEEEEEeC-C--EEEEEE----CCCeEEEEecCCC--cceeEEEecc
Q 001349 787 KVLSNGHDSSADFWNHR----ELVHVDSSENGKVLSIACFR-D--KIFSGH----SDGTIKVWTGRGS--ILHLIQQIRE 853 (1094)
Q Consensus 787 ~l~s~s~dg~I~vWd~~----~~~~~~~~h~~~V~~l~fsp-d--~LaSgs----~Dg~I~vWd~~t~--~~~~~~~l~~ 853 (1094)
.++.|..+|.|.+-... ....+..+|....++++|++ | .||.|- .|..+.|||+.++ ..+.-..+.+
T Consensus 72 IlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~ 151 (783)
T KOG1008|consen 72 ILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSS 151 (783)
T ss_pred hhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCcccccccc
Confidence 57778888999887765 22455667888999999998 3 787774 4678999999876 2122222222
Q ss_pred -cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEE
Q 001349 854 -HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLL 932 (1094)
Q Consensus 854 -H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~ 932 (1094)
-.....+++|-.+.+++.+|...+.+.++|++.....+. .+.
T Consensus 152 ~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~----------svn--------------------------- 194 (783)
T KOG1008|consen 152 STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVS----------SVN--------------------------- 194 (783)
T ss_pred ccccCccccccccCcchhhcccccchhhhhhhhhhhhhhh----------hhh---------------------------
Confidence 344566888888889999999999999999985321111 110
Q ss_pred cCCCCceEEEEeC--CEEEEEEcCCeEEEEE-CCCCceeE-EeccceeecCCCCCeEEEEEeCCc-cEEEEEECCCCEEE
Q 001349 933 NSSKYPKCLALVQ--GKVYCGCQDGAIQEID-LATGTFAT-IQTGHRKLLGKANPVHALQVHNGL-VYTASTSLDGAAVK 1007 (1094)
Q Consensus 933 ~~~~~v~~l~~s~--~~l~sgs~Dg~I~iwD-l~~~~~~~-~~~~~~~~~~h~~~V~sl~fs~~~-~~las~s~Dg~~I~ 1007 (1094)
++.+..+.+.| ...++...||.|-+|| .++-+... ... +.-......+..++|.|.. -.+++...|..+|+
T Consensus 195 --Tk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~--~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIr 270 (783)
T KOG1008|consen 195 --TKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIIL--RNENKKPKQLFALAYCPTRTGLLAVLSRDSITIR 270 (783)
T ss_pred --hhhcccceecCCCCCceeccccCceeeccchhhhccHHHHHh--hCCCCcccceeeEEeccCCcchhhhhccCcceEE
Confidence 01111222221 1244556699999999 33322211 000 0001112348899998643 34566677777999
Q ss_pred EEECC
Q 001349 1008 MWSTS 1012 (1094)
Q Consensus 1008 iwd~~ 1012 (1094)
++|+.
T Consensus 271 lydi~ 275 (783)
T KOG1008|consen 271 LYDIC 275 (783)
T ss_pred Eeccc
Confidence 99985
No 406
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.024 Score=62.90 Aligned_cols=171 Identities=20% Similarity=0.207 Sum_probs=123.0
Q ss_pred cchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHh-cCCchhHHHHHHHHHH
Q 001349 436 SIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMA-ASDGERFEIVCFLSEL 514 (1094)
Q Consensus 436 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~l~el 514 (1094)
.|+.-+++.||...|+..+++.+..-|+.||.+|.-|.|.+..+-..+-..+.++.|+..|.+ ....+|.+|+-+++.|
T Consensus 115 DnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissL 194 (342)
T KOG2160|consen 115 DNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSL 194 (342)
T ss_pred hhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHH
Confidence 578888999999999999999999999999999999999999999999999999999998776 4566678888888888
Q ss_pred HhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHH-HHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCC
Q 001349 515 VKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAG-LLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDY 593 (1094)
Q Consensus 515 ~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~-~l~~l~~~~~~~~~~~~reea~~~~~~~l~~~~~ 593 (1094)
++.+.-- ..+|++ -+++.. |.-.+|+-..+.+.-+-+ .|++.=+..++....+...+.....+..+.....
T Consensus 195 IRn~~~g-~~~fl~----~~G~~~---L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~ 266 (342)
T KOG2160|consen 195 IRNNKPG-QDEFLK----LNGYQV---LRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLD 266 (342)
T ss_pred HhcCcHH-HHHHHh----cCCHHH---HHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccc
Confidence 8775311 222222 223332 555566555555554433 3444444455566667777777777777776666
Q ss_pred hHHHHHHHHHHHhcccccccC
Q 001349 594 PAAQLAAAKTIVSLQGRFTTS 614 (1094)
Q Consensus 594 ~~~~~~~~~~~~~l~g~~s~~ 614 (1094)
...++.+-.+++.+--.++..
T Consensus 267 ~~~~e~~l~~~l~~l~~~~~~ 287 (342)
T KOG2160|consen 267 FEVNEAALTALLSLLSELSTR 287 (342)
T ss_pred hhhhHHHHHHHHHHHHHHhhc
Confidence 666777777777765555443
No 407
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.0004 Score=53.63 Aligned_cols=45 Identities=20% Similarity=0.193 Sum_probs=38.8
Q ss_pred eeccCccccccCcEEcCCcc-cccHHhHHHHHHhCCCCCCCCCcCC
Q 001349 164 FVCPITTHIFDDPVTLETGQ-TYERRAIQEWIERGNSSCPITRQKL 208 (1094)
Q Consensus 164 ~~CpIc~~~~~dPv~~~cGh-tfc~~ci~~~~~~~~~~CP~c~~~~ 208 (1094)
-.|.||.+--.|.|+-.||| ..|..|-.+.+...+..||.||.++
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi 53 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPI 53 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence 46999999888888889999 5699999987776677899999865
No 408
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.62 E-value=2.3 Score=50.25 Aligned_cols=221 Identities=13% Similarity=0.191 Sum_probs=113.0
Q ss_pred EEEEEEeCC--EE-EEEECCC----eEEEEecCCCcceeEEE-ecccCCCeEEEEEecCCCEEEEEeCCC----------
Q 001349 816 VLSIACFRD--KI-FSGHSDG----TIKVWTGRGSILHLIQQ-IREHTKAVTGLAILQSGEMLYSGSLDK---------- 877 (1094)
Q Consensus 816 V~~l~fspd--~L-aSgs~Dg----~I~vWd~~t~~~~~~~~-l~~H~~~V~sv~fspdg~~LaSgs~Dg---------- 877 (1094)
+....++|| ++ ++-+..| +|+++|+.++ +.+.. +... . -..+.|.+|++.|+-...|.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg--~~l~d~i~~~-~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~ 201 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG--KFLPDGIENP-K-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYP 201 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT--EEEEEEEEEE-E-SEEEEECTTSSEEEEEECSTTTSS-CCGCC
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC--cCcCCccccc-c-cceEEEeCCCCEEEEEEeCcccccccCCCC
Confidence 345778886 44 4445444 5999999999 44432 2221 1 22399999988776665433
Q ss_pred -cEEEEECCCCceE--EEEecccCcc-ceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEc
Q 001349 878 -TARVWSIGNEEIH--CVQVHDIKDQ-IQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQ 953 (1094)
Q Consensus 878 -tI~vWdi~~~~~~--~~~~~~~~~~-V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~ 953 (1094)
.|+.|++.++... .+........ ...+. .++|++++++....+. .
T Consensus 202 ~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~-------~s~d~~~l~i~~~~~~------------------------~ 250 (414)
T PF02897_consen 202 RQVYRHKLGTPQSEDELVFEEPDEPFWFVSVS-------RSKDGRYLFISSSSGT------------------------S 250 (414)
T ss_dssp EEEEEEETTS-GGG-EEEEC-TTCTTSEEEEE-------E-TTSSEEEEEEESSS------------------------S
T ss_pred cEEEEEECCCChHhCeeEEeecCCCcEEEEEE-------ecCcccEEEEEEEccc------------------------c
Confidence 3788888776532 2221111111 22333 6778877654433321 1
Q ss_pred CCeEEEEECCCC-----ceeEEeccceeecCCCCCe-EEEEEeCCccEEEEEECCC--CEEEEEECCCCeE---E-EEec
Q 001349 954 DGAIQEIDLATG-----TFATIQTGHRKLLGKANPV-HALQVHNGLVYTASTSLDG--AAVKMWSTSNYNM---V-GSLP 1021 (1094)
Q Consensus 954 Dg~I~iwDl~~~-----~~~~~~~~~~~~~~h~~~V-~sl~fs~~~~~las~s~Dg--~~I~iwd~~~~~~---~-~~~~ 1021 (1094)
...+.+.|...+ ... .+......+ ..+....+..++.+. .+. +.|.-.++.+... . -.+.
T Consensus 251 ~s~v~~~d~~~~~~~~~~~~-------~l~~~~~~~~~~v~~~~~~~yi~Tn-~~a~~~~l~~~~l~~~~~~~~~~~l~~ 322 (414)
T PF02897_consen 251 ESEVYLLDLDDGGSPDAKPK-------LLSPREDGVEYYVDHHGDRLYILTN-DDAPNGRLVAVDLADPSPAEWWTVLIP 322 (414)
T ss_dssp EEEEEEEECCCTTTSS-SEE-------EEEESSSS-EEEEEEETTEEEEEE--TT-TT-EEEEEETTSTSGGGEEEEEE-
T ss_pred CCeEEEEeccccCCCcCCcE-------EEeCCCCceEEEEEccCCEEEEeeC-CCCCCcEEEEecccccccccceeEEcC
Confidence 145777777764 222 222222233 334444444444443 221 2566667776542 2 2233
Q ss_pred CCC--CEEEEEEeCCEEEEE-EcCC--eEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEE
Q 001349 1022 TLS--EVRAMVVSSELVYLG-CKGG--TVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFL 1079 (1094)
Q Consensus 1022 ~~~--~v~~l~~spd~l~sg-s~dg--~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L 1079 (1094)
+.. .+..+....++++.. ..++ .|++|++..+.....+...-.+.|..+...++++.+
T Consensus 323 ~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~ 385 (414)
T PF02897_consen 323 EDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDEL 385 (414)
T ss_dssp -SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEE
T ss_pred CCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEE
Confidence 433 577888888855544 4443 688999994444444433344556776666666543
No 409
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.0013 Score=69.58 Aligned_cols=47 Identities=19% Similarity=0.509 Sum_probs=39.0
Q ss_pred eeccCcccccc--CcE-EcCCcccccHHhHHHHHHhCCCCCCCCCcCCCC
Q 001349 164 FVCPITTHIFD--DPV-TLETGQTYERRAIQEWIERGNSSCPITRQKLSS 210 (1094)
Q Consensus 164 ~~CpIc~~~~~--dPv-~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~ 210 (1094)
..|.||++-|. |-+ ++||.|.|=+.|+.+|+..-...||+||..+++
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 56999998875 344 579999999999999998545579999988764
No 410
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=96.61 E-value=0.028 Score=60.95 Aligned_cols=223 Identities=13% Similarity=0.148 Sum_probs=138.8
Q ss_pred chHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcC------hHHHHH
Q 001349 302 ELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG------LLEAVV 375 (1094)
Q Consensus 302 ~~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g------~~~Aa~ 375 (1094)
.+.+..+++-|.++. |+.+.+..|.+.+|-.|.|+.-... .++.++=..|++++|+.+|.+. .-.|..
T Consensus 150 TkvVvd~~AVPlfiq-----lL~s~~~~V~eQavWALGNiAGDS~-~~RD~vL~~galeplL~ll~ss~~~ismlRn~TW 223 (526)
T COG5064 150 TKVVVDAGAVPLFIQ-----LLSSTEDDVREQAVWALGNIAGDSE-GCRDYVLQCGALEPLLGLLLSSAIHISMLRNATW 223 (526)
T ss_pred eEEEEeCCchHHHHH-----HHcCchHHHHHHHHHHhccccCCch-hHHHHHHhcCchHHHHHHHHhccchHHHHHHhHH
Confidence 466666777777555 5667889999999999999954444 4555555678999999888665 457778
Q ss_pred HHHhcC---CChHHHHHhhhh-HHHHHHHHhcccc------------------cccc------------ccC-c----hh
Q 001349 376 LIDLLR---PSTRTLIEMDMM-ESLMTVIKKKEED------------------FLKM------------CLK-P----KS 416 (1094)
Q Consensus 376 ~l~~L~---~~~~~~~~~~~~-~~Ll~~l~~~~~~------------------~~~~------------~~~-~----~~ 416 (1094)
+|-+|. ..+.+-..|..+ |.|-.++-..+.+ ...+ +++ | +.
T Consensus 224 tLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqt 303 (526)
T COG5064 224 TLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQT 303 (526)
T ss_pred HHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccC
Confidence 888882 112222222222 4444444332110 0000 111 1 35
Q ss_pred hHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHH
Q 001349 417 VSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESF 496 (1094)
Q Consensus 417 aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~ 496 (1094)
.|+...+++++|.|.-+ ..++..|+++.+...|.+....-|..|-.-+.+.-+-+..--.++-+..=++||++||
T Consensus 304 PalR~vGNIVTG~D~QT-----qviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~ll 378 (526)
T COG5064 304 PALRSVGNIVTGSDDQT-----QVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLL 378 (526)
T ss_pred HHHHhhcCeeecCccce-----ehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHH
Confidence 56777788888877544 3577889999999988876666666665555555455556667888888899999999
Q ss_pred HhcCCch-hHHHHHHHHHHHhccccchhHHHHHHhhhcCcchh
Q 001349 497 MAASDGE-RFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSS 538 (1094)
Q Consensus 497 ~~~~~~~-~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~ 538 (1094)
.+..=+. |++|-+..-.-+...++. .+++-+-..|.+..
T Consensus 379 s~ae~k~kKEACWAisNatsgg~~~P---D~iryLv~qG~Ikp 418 (526)
T COG5064 379 SSAEYKIKKEACWAISNATSGGLNRP---DIIRYLVSQGFIKP 418 (526)
T ss_pred HHHHHHHHHHHHHHHHhhhccccCCc---hHHHHHHHccchhH
Confidence 8865444 445544444444444544 23444445555554
No 411
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.55 E-value=0.55 Score=52.73 Aligned_cols=223 Identities=10% Similarity=0.039 Sum_probs=118.1
Q ss_pred EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCce-EEEEecccCcccee
Q 001349 825 KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEI-HCVQVHDIKDQIQN 903 (1094)
Q Consensus 825 ~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~-~~~~~~~~~~~V~~ 903 (1094)
++.+--..+.|.-||..++. ...+. +.+.+.++..-.++..|+++.. -+.+++.+++.. ..+.......+.
T Consensus 39 L~w~DI~~~~i~r~~~~~g~---~~~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~-- 110 (307)
T COG3386 39 LLWVDILGGRIHRLDPETGK---KRVFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPL-- 110 (307)
T ss_pred EEEEeCCCCeEEEecCCcCc---eEEEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCCCCc--
Confidence 55666677888889988763 23332 3333444444444445554433 367788766643 222211111111
Q ss_pred eeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCC
Q 001349 904 LAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANP 983 (1094)
Q Consensus 904 v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~ 983 (1094)
..++...+.|+|...+..... ++ .. .-..-.-|.++.+|. .+.... .+..+-..
T Consensus 111 --~r~ND~~v~pdG~~wfgt~~~-----~~-------~~-----~~~~~~~G~lyr~~p-~g~~~~------l~~~~~~~ 164 (307)
T COG3386 111 --NRPNDGVVDPDGRIWFGDMGY-----FD-------LG-----KSEERPTGSLYRVDP-DGGVVR------LLDDDLTI 164 (307)
T ss_pred --CCCCceeEcCCCCEEEeCCCc-----cc-------cC-----ccccCCcceEEEEcC-CCCEEE------eecCcEEe
Confidence 123344467777654332221 00 00 000011234555554 344432 22233345
Q ss_pred eEEEEEeCCccEEEEEECCCCEEEEEECCC--CeE-----EEEec-CCCCEEEEEEeCC-EEE-EEEcCC-eEEEEECCC
Q 001349 984 VHALQVHNGLVYTASTSLDGAAVKMWSTSN--YNM-----VGSLP-TLSEVRAMVVSSE-LVY-LGCKGG-TVEIWDQKR 1052 (1094)
Q Consensus 984 V~sl~fs~~~~~las~s~Dg~~I~iwd~~~--~~~-----~~~~~-~~~~v~~l~~spd-~l~-sgs~dg-~I~vwd~~t 1052 (1094)
-+.++|+||+..+...-...+.|.-|++.. +.. ...+. ..+..-.+++..+ .++ ++..+| .|.+|+..
T Consensus 165 ~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd- 243 (307)
T COG3386 165 PNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD- 243 (307)
T ss_pred cCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-
Confidence 678999999977766655545788887752 111 11111 2455666777776 455 444443 99999999
Q ss_pred CcEEEEecccCCcceEEEEEc-CCCCEEEEEe
Q 001349 1053 QIRIETLQTGTSGKVQCMALD-DNEEFLVIGT 1083 (1094)
Q Consensus 1053 ~~~~~~l~~~h~~~I~~l~~S-pdg~~L~sgs 1083 (1094)
|+++..+.. ....+++++|- |+.+.|+..+
T Consensus 244 G~l~~~i~l-P~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 244 GKLLGEIKL-PVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred CcEEEEEEC-CCCCCccceEeCCCcCEEEEEe
Confidence 998888853 33678888884 4555555443
No 412
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.55 E-value=0.16 Score=59.80 Aligned_cols=179 Identities=12% Similarity=0.038 Sum_probs=100.4
Q ss_pred ccCCCcEEEEEEeCC---EEEEE--ECC-CeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEE-eCCCc--EE
Q 001349 810 SSENGKVLSIACFRD---KIFSG--HSD-GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSG-SLDKT--AR 880 (1094)
Q Consensus 810 ~~h~~~V~~l~fspd---~LaSg--s~D-g~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSg-s~Dgt--I~ 880 (1094)
......+..-.|+|+ ..+.. ... ..+.++|+.++....+..+.++.. .-.|+|||+.|+-. ..||. |.
T Consensus 189 ~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~---~P~fspDG~~l~f~~~rdg~~~iy 265 (425)
T COG0823 189 TDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNG---APAFSPDGSKLAFSSSRDGSPDIY 265 (425)
T ss_pred cccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccC---CccCCCCCCEEEEEECCCCCccEE
Confidence 334455666778875 22222 222 459999999986666666666654 45899999877644 45665 55
Q ss_pred EEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCC--eEE
Q 001349 881 VWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDG--AIQ 958 (1094)
Q Consensus 881 vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg--~I~ 958 (1094)
+.|+.++.... ......+.. .-.|+|||+.++..+ +..| .|.
T Consensus 266 ~~dl~~~~~~~---Lt~~~gi~~------~Ps~spdG~~ivf~S---------------------------dr~G~p~I~ 309 (425)
T COG0823 266 LMDLDGKNLPR---LTNGFGINT------SPSWSPDGSKIVFTS---------------------------DRGGRPQIY 309 (425)
T ss_pred EEcCCCCccee---cccCCcccc------CccCCCCCCEEEEEe---------------------------CCCCCcceE
Confidence 55666654222 111111111 123999999865433 2333 355
Q ss_pred EEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCE--EEEEECCCCeEEEEecCCCCEEEEEEeCC
Q 001349 959 EIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAA--VKMWSTSNYNMVGSLPTLSEVRAMVVSSE 1034 (1094)
Q Consensus 959 iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~--I~iwd~~~~~~~~~~~~~~~v~~l~~spd 1034 (1094)
++|...+..... +..+ ..-..-.++|++.+++..+..++. |.+.|..++...+.+.+......-.+.++
T Consensus 310 ~~~~~g~~~~ri-----T~~~--~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~n 380 (425)
T COG0823 310 LYDLEGSQVTRL-----TFSG--GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPN 380 (425)
T ss_pred EECCCCCceeEe-----eccC--CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCC
Confidence 566665554221 1111 111156678999998888754333 66666666554555554444444555555
No 413
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.54 E-value=0.16 Score=62.39 Aligned_cols=226 Identities=16% Similarity=0.204 Sum_probs=120.5
Q ss_pred CcEEEEeeCCC------CeEEEeCCcceeec---ccCCCcEEEEEEeCC-EEEEEECC------CeEEEEecCCCcceeE
Q 001349 785 MVKVLSNGHDS------SADFWNHRELVHVD---SSENGKVLSIACFRD-KIFSGHSD------GTIKVWTGRGSILHLI 848 (1094)
Q Consensus 785 ~~~l~s~s~dg------~I~vWd~~~~~~~~---~~h~~~V~~l~fspd-~LaSgs~D------g~I~vWd~~t~~~~~~ 848 (1094)
+..++.||.++ .+..+|..+..... -.+...-.+++..++ ..++|+.| .++..||..++.|..+
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~ 364 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPV 364 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceecc
Confidence 45667777774 56667766321111 112333556667776 78888888 3577889888866555
Q ss_pred EEecccCCCeEEEEEecCCCEEEEEeCCCc-----EEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEE
Q 001349 849 QQIREHTKAVTGLAILQSGEMLYSGSLDKT-----ARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVH 923 (1094)
Q Consensus 849 ~~l~~H~~~V~sv~fspdg~~LaSgs~Dgt-----I~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~ 923 (1094)
..+...........+ +|.+.|+||.||. |-.||..+.++........ .....
T Consensus 365 a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~--~r~~~------------------- 421 (571)
T KOG4441|consen 365 APMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT--RRSGH------------------- 421 (571)
T ss_pred CCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCCCCc--ceeee-------------------
Confidence 444333222222222 7888899999864 6667777654332221111 11110
Q ss_pred EeCCeEEEEcCCCCceEEEEeCCE-EEEEEcC------CeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEE
Q 001349 924 LRNGKTKLLNSSKYPKCLALVQGK-VYCGCQD------GAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYT 996 (1094)
Q Consensus 924 ~~~g~i~l~~~~~~v~~l~~s~~~-l~sgs~D------g~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~l 996 (1094)
+++..+++ .++|+.+ .++..||..++......+-.....+ ..++...+..|.
T Consensus 422 ----------------gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~-----~g~a~~~~~iYv 480 (571)
T KOG4441|consen 422 ----------------GVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSG-----FGVAVLNGKIYV 480 (571)
T ss_pred ----------------EEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccccc-----ceEEEECCEEEE
Confidence 11111222 2334333 4678999998887643222111112 235556666666
Q ss_pred EEEECC---CCEEEEEECCCCe--EEEEecCCCCEEEEEEeCC-EEEEEEcCC-----eEEEEECCCCc
Q 001349 997 ASTSLD---GAAVKMWSTSNYN--MVGSLPTLSEVRAMVVSSE-LVYLGCKGG-----TVEIWDQKRQI 1054 (1094)
Q Consensus 997 as~s~D---g~~I~iwd~~~~~--~~~~~~~~~~v~~l~~spd-~l~sgs~dg-----~I~vwd~~t~~ 1054 (1094)
+.|..+ ..+|..||..+.+ .+........-..++...+ ..++|+.|| +|..||..+.+
T Consensus 481 vGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 481 VGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred ECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCccccceeEEcCCCCCc
Confidence 555332 1357888887644 3333333333334444444 666777665 57777766543
No 414
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.53 E-value=0.0062 Score=43.54 Aligned_cols=38 Identities=29% Similarity=0.623 Sum_probs=33.0
Q ss_pred cEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1054 IRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1054 ~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
++...+ ..|...|+++.|++++.++++++.||.+++|+
T Consensus 3 ~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTL-KGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEE-EecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 445566 47888999999999999999999999999996
No 415
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.49 E-value=0.011 Score=56.02 Aligned_cols=116 Identities=12% Similarity=0.141 Sum_probs=92.9
Q ss_pred HHHhhhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHH
Q 001349 387 LIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAV 466 (1094)
Q Consensus 387 ~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 466 (1094)
+...+.++.|+..|..+.. ..+..++..|..+-.. +++....+++.|+++.|++.+..++.+-+..++
T Consensus 3 ~~~~~~i~~l~~~l~~~~~-------~~~~~a~~~l~~l~~~-----~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~ 70 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDE-------NVQREAAWALSNLSAG-----NNDNIQAVVEAGGLPALVQLLKSEDEEVVKAAL 70 (120)
T ss_pred HHHcCChHHHHHHHHcCCH-------HHHHHHHHHHHHHhcC-----CHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHH
Confidence 4556677889998887641 2256666667766322 267778888899999999999999999999999
Q ss_pred HHHHHHhhccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHHH
Q 001349 467 GILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSEL 514 (1094)
Q Consensus 467 ~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el 514 (1094)
.+|.+..+.....+..+.+.+.++.+++++...+.+.+..+..+|..|
T Consensus 71 ~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 71 WALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HHHHHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 999888887778888888899999999999988888888888888765
No 416
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.46 E-value=0.014 Score=55.30 Aligned_cols=100 Identities=11% Similarity=0.111 Sum_probs=79.3
Q ss_pred hhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHHHHhccc
Q 001349 440 TIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNR 519 (1094)
Q Consensus 440 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el~~~~r 519 (1094)
.+++.|+++.|++.+..++.+.|..++.+|......+..++..+.+.+.++.++.++...+.+.+..++..|..+...+-
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 35678999999999999999999999998888777778899999999999999999998888888899999999976532
Q ss_pred cchhHHHHHHhhhcCcchhHHHHHHHHh
Q 001349 520 RTFNEQILHIIKDEGTYSSMHTLLVYLQ 547 (1094)
Q Consensus 520 ~~~~~~~l~~i~~~~~~~~~~~~~~~l~ 547 (1094)
.....+.+.|.++. ++.+++
T Consensus 82 -----~~~~~~~~~g~l~~---l~~~l~ 101 (120)
T cd00020 82 -----DNKLIVLEAGGVPK---LVNLLD 101 (120)
T ss_pred -----HHHHHHHHCCChHH---HHHHHh
Confidence 22333344554444 555553
No 417
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.013 Score=68.50 Aligned_cols=91 Identities=16% Similarity=0.111 Sum_probs=72.7
Q ss_pred CCcEEEEEEeC--CEEEEEECCCeEEEEecCCCcceeEEEecccCCCeE-EEEEecCCCEEEEEeCCCcEEEEECCCCce
Q 001349 813 NGKVLSIACFR--DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVT-GLAILQSGEMLYSGSLDKTARVWSIGNEEI 889 (1094)
Q Consensus 813 ~~~V~~l~fsp--d~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~-sv~fspdg~~LaSgs~DgtI~vWdi~~~~~ 889 (1094)
...|.-+.|+| |++|.+..+|.|-+..+.- +.++++.-|...++ +++|.|||+.|+.|-.||+|++.|+.++..
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~---qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNW---QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEecc---ceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 45678889999 4999999999999998873 67888887888887 999999999999999999999999999853
Q ss_pred EEEEecccCccceeeee
Q 001349 890 HCVQVHDIKDQIQNLAV 906 (1094)
Q Consensus 890 ~~~~~~~~~~~V~~v~~ 906 (1094)
..-.......+|.++.|
T Consensus 97 l~~~~~s~e~~is~~~w 113 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIW 113 (665)
T ss_pred eeccccccccchheeec
Confidence 32222334455555553
No 418
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.0028 Score=68.07 Aligned_cols=55 Identities=25% Similarity=0.477 Sum_probs=45.0
Q ss_pred CCCCCceeccCccccccCcEEc-CCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCC
Q 001349 158 HTPPKDFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLSSTKL 213 (1094)
Q Consensus 158 ~~~~~~~~CpIc~~~~~dPv~~-~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~ 213 (1094)
...|+.-.||+|+.--.+|.++ -.|..||+.||-.+... ++.||+++.+....++
T Consensus 295 ~l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~-~~~CPVT~~p~~v~~l 350 (357)
T KOG0826|consen 295 LLPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN-YGHCPVTGYPASVDHL 350 (357)
T ss_pred cCCCccccChhHHhccCCCceEEecceEEeHHHHHHHHHh-cCCCCccCCcchHHHH
Confidence 3445678899999999999776 56999999999999985 7789999887654433
No 419
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.38 E-value=0.23 Score=60.20 Aligned_cols=230 Identities=12% Similarity=0.198 Sum_probs=149.3
Q ss_pred hHhhhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCCChHHHHHh---
Q 001349 318 FVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPSTRTLIEM--- 390 (1094)
Q Consensus 318 ~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~~~~~~~~--- 390 (1094)
++...+.+.++.|++.+...|..+...+....+.+. ..+-++.++..|+.. ...|..+|..|...+.....+
T Consensus 81 ~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~-~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~ 159 (503)
T PF10508_consen 81 FLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLV-DNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDS 159 (503)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhc-CccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCc
Confidence 333344467899999999998888655554444333 445668888888776 456677888887776665544
Q ss_pred hhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHH
Q 001349 391 DMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILL 470 (1094)
Q Consensus 391 ~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~ 470 (1094)
+..+.|..++.+.++. .-+.+++-++.-+ ..+.+....+...|.++.+++.+++.+.=-|.++..+|.
T Consensus 160 ~~~~~L~~l~~~~~~~----------vR~Rv~el~v~i~--~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~ 227 (503)
T PF10508_consen 160 NLLSKLKSLMSQSSDI----------VRCRVYELLVEIA--SHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLS 227 (503)
T ss_pred chHHHHHHHHhccCHH----------HHHHHHHHHHHHH--hcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 2246666666553321 1122333232222 344567777888898999999999999999999999888
Q ss_pred HHhhccCcchhhHhhhcCchhHHHHHHhcCCchhHHH------HHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHH
Q 001349 471 RCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEI------VCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLV 544 (1094)
Q Consensus 471 ~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~------~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~ 544 (1094)
.... ...+..|+.+.+-++-++.++.......+..+ +.|+-.+... .-.+++... -..++.+..
T Consensus 228 ~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~----~~~~v~~~~-----p~~~~~l~~ 297 (503)
T PF10508_consen 228 ELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV----SPQEVLELY-----PAFLERLFS 297 (503)
T ss_pred HHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc----ChHHHHHHH-----HHHHHHHHH
Confidence 7766 88889999999999999998877544443333 3444444332 122232222 234556667
Q ss_pred HHhhcCCccchhHHHHHHhhhcccCC
Q 001349 545 YLQTANHDQCPVVAGLLLQLDLLAEP 570 (1094)
Q Consensus 545 ~l~~~~~~~~~~~a~~l~~l~~~~~~ 570 (1094)
.+++..+..++.|-.-|.++..-.+.
T Consensus 298 ~~~s~d~~~~~~A~dtlg~igst~~G 323 (503)
T PF10508_consen 298 MLESQDPTIREVAFDTLGQIGSTVEG 323 (503)
T ss_pred HhCCCChhHHHHHHHHHHHHhCCHHH
Confidence 77777777777777777777654433
No 420
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=96.37 E-value=0.064 Score=58.31 Aligned_cols=80 Identities=18% Similarity=0.207 Sum_probs=65.1
Q ss_pred hhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhcCCchhH--HHHHHHHHHHh
Q 001349 439 NTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERF--EIVCFLSELVK 516 (1094)
Q Consensus 439 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~l~el~~ 516 (1094)
+-++..|++|.++.+|-+++.+.|++++.+|-+.--....||.++.++++++|++.||.+....-+. ++.=.|+.|-+
T Consensus 151 kvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcR 230 (526)
T COG5064 151 KVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCR 230 (526)
T ss_pred EEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhC
Confidence 3467889999999999999999999999999988888899999999999999999999865542222 34455666655
Q ss_pred cc
Q 001349 517 LN 518 (1094)
Q Consensus 517 ~~ 518 (1094)
.+
T Consensus 231 Gk 232 (526)
T COG5064 231 GK 232 (526)
T ss_pred CC
Confidence 44
No 421
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.36 E-value=1.4 Score=50.06 Aligned_cols=208 Identities=13% Similarity=0.129 Sum_probs=117.1
Q ss_pred CeEEEEecCCCcceeEEEecccCCCeEEEE---EecC----CCEEEEEeC----------CCcEEEEECCCC-----ceE
Q 001349 833 GTIKVWTGRGSILHLIQQIREHTKAVTGLA---ILQS----GEMLYSGSL----------DKTARVWSIGNE-----EIH 890 (1094)
Q Consensus 833 g~I~vWd~~t~~~~~~~~l~~H~~~V~sv~---fspd----g~~LaSgs~----------DgtI~vWdi~~~-----~~~ 890 (1094)
+.|++.|..+........+.. ...++++. |..+ ..+|+.|+. .|.|.++++... +++
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~-~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~ 80 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEP-NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK 80 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEET-TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred cEEEEEeCCCCeEEEEEECCC-CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence 357777877763222222332 22344433 3322 457777654 288999999984 566
Q ss_pred EEEecccCccceeeeecCceEEEeeCCCeEEEEEeC-Ce-E---EEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCC-
Q 001349 891 CVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRN-GK-T---KLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLAT- 964 (1094)
Q Consensus 891 ~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~-g~-i---~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~- 964 (1094)
.+.....+++|.++......+...-+ ..+.+...+ .. + ..++....+.++...++.+++|.....+.++....
T Consensus 81 ~i~~~~~~g~V~ai~~~~~~lv~~~g-~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~ 159 (321)
T PF03178_consen 81 LIHSTEVKGPVTAICSFNGRLVVAVG-NKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEE 159 (321)
T ss_dssp EEEEEEESS-EEEEEEETTEEEEEET-TEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETT
T ss_pred EEEEEeecCcceEhhhhCCEEEEeec-CEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEcc
Confidence 66667778999998855444333332 222222222 22 1 12334457788888889999999999998875443
Q ss_pred -CceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCC-------Ce----EEEEecCCCCEEEE---
Q 001349 965 -GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSN-------YN----MVGSLPTLSEVRAM--- 1029 (1094)
Q Consensus 965 -~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~-------~~----~~~~~~~~~~v~~l--- 1029 (1094)
.+...... ......++++.|-.++..++.+..+| .+.++.... +. ....+..+..|+++
T Consensus 160 ~~~l~~va~-----d~~~~~v~~~~~l~d~~~~i~~D~~g-nl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~ 233 (321)
T PF03178_consen 160 NNKLILVAR-----DYQPRWVTAAEFLVDEDTIIVGDKDG-NLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRG 233 (321)
T ss_dssp TE-EEEEEE-----ESS-BEEEEEEEE-SSSEEEEEETTS-EEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE-
T ss_pred CCEEEEEEe-----cCCCccEEEEEEecCCcEEEEEcCCC-eEEEEEECCCCcccccccccceeEEEEECCCccceEEEE
Confidence 22222111 11234688888874445777777776 888887752 22 33445567778887
Q ss_pred EEeC-----C-----EEEEEEcCCeEEEE
Q 001349 1030 VVSS-----E-----LVYLGCKGGTVEIW 1048 (1094)
Q Consensus 1030 ~~sp-----d-----~l~sgs~dg~I~vw 1048 (1094)
.+.| + .++.++.+|.|.+.
T Consensus 234 ~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 234 SLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp -SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EeeecCCCCcccccceEEEEecCCEEEEE
Confidence 4333 1 37888888888744
No 422
>PRK09687 putative lyase; Provisional
Probab=96.30 E-value=0.26 Score=54.77 Aligned_cols=223 Identities=13% Similarity=0.067 Sum_probs=128.4
Q ss_pred HhhhHhhhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCCChHHHHHh
Q 001349 315 INGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPSTRTLIEM 390 (1094)
Q Consensus 315 ~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~~~~~~~~ 390 (1094)
++.+.+.| .+.+..|...++..|.++.. .-.++.+..+++.. +..|+..|..|...+.. ..
T Consensus 25 ~~~L~~~L-~d~d~~vR~~A~~aL~~~~~------------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~--~~ 89 (280)
T PRK09687 25 DDELFRLL-DDHNSLKRISSIRVLQLRGG------------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC--QD 89 (280)
T ss_pred HHHHHHHH-hCCCHHHHHHHHHHHHhcCc------------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc--hH
Confidence 34444444 55677788888888877721 11335666666665 56677778877653321 11
Q ss_pred hhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHH
Q 001349 391 DMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILL 470 (1094)
Q Consensus 391 ~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~ 470 (1094)
+.++.|..++.+..+. .-+.+|+..|+.+= ..........+..|...+...+.+.|..|+..|.
T Consensus 90 ~a~~~L~~l~~~D~d~------~VR~~A~~aLG~~~----------~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg 153 (280)
T PRK09687 90 NVFNILNNLALEDKSA------CVRASAINATGHRC----------KKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALS 153 (280)
T ss_pred HHHHHHHHHHhcCCCH------HHHHHHHHHHhccc----------ccccccchHHHHHHHHHhhCCCHHHHHHHHHHHh
Confidence 2336666554433211 11455555565440 0011112334566767777778888888877764
Q ss_pred HHhhccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcC
Q 001349 471 RCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTAN 550 (1094)
Q Consensus 471 ~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~ 550 (1094)
++ .+...+++|+.+|...+...|..|+..|-.+ .. +.-.+...|...|+...
T Consensus 154 ~~-----------~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~-~~----------------~~~~~~~~L~~~L~D~~ 205 (280)
T PRK09687 154 VI-----------NDEAAIPLLINLLKDPNGDVRNWAAFALNSN-KY----------------DNPDIREAFVAMLQDKN 205 (280)
T ss_pred cc-----------CCHHHHHHHHHHhcCCCHHHHHHHHHHHhcC-CC----------------CCHHHHHHHHHHhcCCC
Confidence 22 2234667788887776666676666666554 10 11122233444444444
Q ss_pred CccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhcccc
Q 001349 551 HDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQGR 610 (1094)
Q Consensus 551 ~~~~~~~a~~l~~l~~~~~~~~~~~~reea~~~~~~~l~~~~~~~~~~~~~~~~~~l~g~ 610 (1094)
++=+--++..|.++.- +++++.|+..|..++ +...++.||+.+|+.
T Consensus 206 ~~VR~~A~~aLg~~~~-----------~~av~~Li~~L~~~~---~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 206 EEIRIEAIIGLALRKD-----------KRVLSVLIKELKKGT---VGDLIIEAAGELGDK 251 (280)
T ss_pred hHHHHHHHHHHHccCC-----------hhHHHHHHHHHcCCc---hHHHHHHHHHhcCCH
Confidence 4445556666655432 579999999998866 466888999988753
No 423
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.26 E-value=3.4 Score=48.25 Aligned_cols=234 Identities=17% Similarity=0.164 Sum_probs=137.0
Q ss_pred cEEEEEEeCC---EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEE-EEEeCCCcEEEEECCCCceE
Q 001349 815 KVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEML-YSGSLDKTARVWSIGNEEIH 890 (1094)
Q Consensus 815 ~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~L-aSgs~DgtI~vWdi~~~~~~ 890 (1094)
....+.+.++ ..++-.....+.+-+.... ........-...-..+++++++..+ ++...++.|.+.|..+..
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n--~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~-- 107 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSN--TVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNT-- 107 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccc--eeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccc--
Confidence 4445566553 3333333335655555532 1111111111334577888888744 444556899999976653
Q ss_pred EEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEE
Q 001349 891 CVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATI 970 (1094)
Q Consensus 891 ~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~ 970 (1094)
......... .+..+.++++++.+.+.... ..++++.+.|..+++....
T Consensus 108 ~~~~~~vG~-------~P~~~~~~~~~~~vYV~n~~-------------------------~~~~~vsvid~~t~~~~~~ 155 (381)
T COG3391 108 VLGSIPVGL-------GPVGLAVDPDGKYVYVANAG-------------------------NGNNTVSVIDAATNKVTAT 155 (381)
T ss_pred eeeEeeecc-------CCceEEECCCCCEEEEEecc-------------------------cCCceEEEEeCCCCeEEEE
Confidence 222211111 23344477777653222110 0368888888888877643
Q ss_pred eccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEE-E----ecCCCCEEEEEEeCC--EEEEEEc--
Q 001349 971 QTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVG-S----LPTLSEVRAMVVSSE--LVYLGCK-- 1041 (1094)
Q Consensus 971 ~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~-~----~~~~~~v~~l~~spd--~l~sgs~-- 1041 (1094)
.. .+. .+ ..++++|++..+.....+++.|.+.|.......+ + ..-......+.++++ ++++...
T Consensus 156 ~~-----vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~ 228 (381)
T COG3391 156 IP-----VGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGS 228 (381)
T ss_pred Ee-----cCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccC
Confidence 11 111 23 7899999998666666555699999987665553 1 223445567888887 4444433
Q ss_pred -CCeEEEEECCCCcEEEE-ecccCCcceEEEEEcCCCCEEEEEeCC-CcEEEEe
Q 001349 1042 -GGTVEIWDQKRQIRIET-LQTGTSGKVQCMALDDNEEFLVIGTSD-GRIQAWG 1092 (1094)
Q Consensus 1042 -dg~I~vwd~~t~~~~~~-l~~~h~~~I~~l~~Spdg~~L~sgs~D-G~I~iWd 1092 (1094)
++.+.+.|..++..... ...+.. ....+.++|+|+.+.+.... +.+.+-|
T Consensus 229 ~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid 281 (381)
T COG3391 229 GSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVID 281 (381)
T ss_pred CCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEe
Confidence 36999999999887766 322222 46678899999998887544 6666654
No 424
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.24 E-value=0.044 Score=62.93 Aligned_cols=132 Identities=9% Similarity=0.181 Sum_probs=89.8
Q ss_pred EEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCcc--------EEEEEECCCCEEEEEECCCCeE--E
Q 001349 948 VYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLV--------YTASTSLDGAAVKMWSTSNYNM--V 1017 (1094)
Q Consensus 948 l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~--------~las~s~Dg~~I~iwd~~~~~~--~ 1017 (1094)
+..+..-..++-.|+..|+.+... .-|.. |+-+.+.|+.. .++..+ ++.|.-||.+-... +
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEW------k~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs--~n~vfriDpRv~~~~kl 419 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEW------KFEDD-INMVDITPDFKFAQLTSEQTLVGLS--DNSVFRIDPRVQGKNKL 419 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEe------eccCC-cceeeccCCcchhcccccccEEeec--CCceEEecccccCccee
Confidence 455666677888899999988443 22332 56666655432 233332 34788999873211 1
Q ss_pred -----EEecCCCCEEEEEEeCC-EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEE
Q 001349 1018 -----GSLPTLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQA 1090 (1094)
Q Consensus 1018 -----~~~~~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~i 1090 (1094)
+.+.......|++...+ ++++||.+|.|++||. .+....+...+-..+|..|..+.||++|+..+.. .+.+
T Consensus 420 ~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t-yLlL 496 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKT-YLLL 496 (644)
T ss_pred eeeeccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEeccc-EEEE
Confidence 12234567788888777 9999999999999998 6655555556788899999999999998866543 4443
No 425
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.22 E-value=3.5 Score=50.33 Aligned_cols=100 Identities=9% Similarity=0.077 Sum_probs=57.3
Q ss_pred CcEEEEeeCCCCeEEEeCCcceeecc--c-CCCcE----------EEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEe
Q 001349 785 MVKVLSNGHDSSADFWNHRELVHVDS--S-ENGKV----------LSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQI 851 (1094)
Q Consensus 785 ~~~l~s~s~dg~I~vWd~~~~~~~~~--~-h~~~V----------~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l 851 (1094)
+..++.++.++.|.-.|..+...... . -...+ ..+++..+.++.++.||.+.-.|..+| +.+...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TG--k~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTG--KVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCC--CEEeec
Confidence 44566666677776666653221111 0 00011 124556678888999999999999999 566554
Q ss_pred cc--cCCCeEEEEEec---CCCEEEEEeC------CCcEEEEECCCCc
Q 001349 852 RE--HTKAVTGLAILQ---SGEMLYSGSL------DKTARVWSIGNEE 888 (1094)
Q Consensus 852 ~~--H~~~V~sv~fsp---dg~~LaSgs~------DgtI~vWdi~~~~ 888 (1094)
.. +... ..+.-+| ++ .++.++. +|.|.-+|..+|+
T Consensus 147 ~~~~~~~~-~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~ 192 (527)
T TIGR03075 147 KNGDYKAG-YTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGK 192 (527)
T ss_pred cccccccc-ccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCc
Confidence 32 2110 1111122 44 4555432 6899999999996
No 426
>PHA02713 hypothetical protein; Provisional
Probab=96.21 E-value=0.22 Score=61.25 Aligned_cols=216 Identities=9% Similarity=0.119 Sum_probs=101.5
Q ss_pred EEEeCC-EEEEEECC------CeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCC-----cEEEEECCC
Q 001349 819 IACFRD-KIFSGHSD------GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDK-----TARVWSIGN 886 (1094)
Q Consensus 819 l~fspd-~LaSgs~D------g~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~Dg-----tI~vWdi~~ 886 (1094)
++...+ .++.|+.+ .++..||..++.+..+..+....... +++ .-+|+..+.||.++ ++..||..+
T Consensus 299 ~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~-~~~g~IYviGG~~~~~~~~sve~Ydp~~ 376 (557)
T PHA02713 299 SAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLA-VIDDTIYAIGGQNGTNVERTIECYTMGD 376 (557)
T ss_pred EEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEE-EECCEEEEECCcCCCCCCceEEEEECCC
Confidence 344444 66667653 34778898887554443332211112 222 23677778888764 477888887
Q ss_pred CceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCc
Q 001349 887 EEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGT 966 (1094)
Q Consensus 887 ~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~ 966 (1094)
+++....... .+..... +..-+|+..++++.++... +........+...++ ...-..+..||+.+++
T Consensus 377 ~~W~~~~~mp--~~r~~~~------~~~~~g~IYviGG~~~~~~-~~~~~~~~~~~~~~~----~~~~~~ve~YDP~td~ 443 (557)
T PHA02713 377 DKWKMLPDMP--IALSSYG------MCVLDQYIYIIGGRTEHID-YTSVHHMNSIDMEED----THSSNKVIRYDTVNNI 443 (557)
T ss_pred CeEEECCCCC--ccccccc------EEEECCEEEEEeCCCcccc-ccccccccccccccc----ccccceEEEECCCCCe
Confidence 6543322211 1111110 0122344333333221100 000000000000000 0012458889998877
Q ss_pred eeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCC----CEEEEEECCC---CeEEEEecCCCCEEEEEEeCC-EEEE
Q 001349 967 FATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG----AAVKMWSTSN---YNMVGSLPTLSEVRAMVVSSE-LVYL 1038 (1094)
Q Consensus 967 ~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg----~~I~iwd~~~---~~~~~~~~~~~~v~~l~~spd-~l~s 1038 (1094)
......-. +...-.+++...+..|+++|..+. ..+..||..+ +..+..++......+++...+ ..++
T Consensus 444 W~~v~~m~-----~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~ 518 (557)
T PHA02713 444 WETLPNFW-----TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILHDNTIMML 518 (557)
T ss_pred EeecCCCC-----cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEECCEEEEE
Confidence 64321110 111112345556666666543211 2467899876 344444443333334444444 6777
Q ss_pred EEcCC--eEEEEECCCCc
Q 001349 1039 GCKGG--TVEIWDQKRQI 1054 (1094)
Q Consensus 1039 gs~dg--~I~vwd~~t~~ 1054 (1094)
|+.+| ++..||+.+.+
T Consensus 519 Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 519 HCYESYMLQDTFNVYTYE 536 (557)
T ss_pred eeecceeehhhcCccccc
Confidence 88887 78888887765
No 427
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.14 E-value=0.37 Score=44.78 Aligned_cols=100 Identities=22% Similarity=0.328 Sum_probs=70.9
Q ss_pred eEEEEEe---C-CccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC-EEEEEEcCCeEEEEECCCCcEEEE
Q 001349 984 VHALQVH---N-GLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIET 1058 (1094)
Q Consensus 984 V~sl~fs---~-~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~~~~~ 1058 (1094)
|+++++. . +...++.++.| ..|++|+- ...+..+.-...|+++.-... .++.|..+|+|-+|+. ...+..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D-~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~--~~RlWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDD-FEIRVFKG--DEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDR--SQRLWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCC-cEEEEEeC--CcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeC--cceeee
Confidence 5566654 2 33567777777 49999974 467888887888888877665 8999999999999986 344555
Q ss_pred ecccCCcceEEEEEcC-C--C-CEEEEEeCCCcEEE
Q 001349 1059 LQTGTSGKVQCMALDD-N--E-EFLVIGTSDGRIQA 1090 (1094)
Q Consensus 1059 l~~~h~~~I~~l~~Sp-d--g-~~L~sgs~DG~I~i 1090 (1094)
++..| .++++++.. + | +-|++|-++|.|-+
T Consensus 77 iKSK~--~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 77 IKSKN--QVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eccCC--CeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 55334 466666543 2 2 36889999998753
No 428
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.04 E-value=0.61 Score=53.90 Aligned_cols=241 Identities=10% Similarity=0.090 Sum_probs=128.0
Q ss_pred CCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccc-eeee-----
Q 001349 832 DGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQI-QNLA----- 905 (1094)
Q Consensus 832 Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V-~~v~----- 905 (1094)
.+.+.|||+.++. +..+......+....|||+|+.++-.. ++.|.+++..++....+.... ...+ ..+.
T Consensus 22 ~~~y~i~d~~~~~---~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg-~~~i~nG~~dwvye 96 (353)
T PF00930_consen 22 KGDYYIYDIETGE---ITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDG-EPGIYNGVPDWVYE 96 (353)
T ss_dssp EEEEEEEETTTTE---EEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES---TTTEEESB--HHHH
T ss_pred ceeEEEEecCCCc---eEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEecccc-ceeEEcCccceecc
Confidence 3678999999983 333333367788999999999998876 468999998887533333322 1111 1111
Q ss_pred ----ecCceEEEeeCCCeEEEEEeC-CeEE---EEc--CCC----CceEEEEeCCEEEEEEcCC--eEEEEECCCCceeE
Q 001349 906 ----VSNSILCFIPQGAGIKVHLRN-GKTK---LLN--SSK----YPKCLALVQGKVYCGCQDG--AIQEIDLATGTFAT 969 (1094)
Q Consensus 906 ----~~~~~~~fspdg~~l~~~~~~-g~i~---l~~--~~~----~v~~l~~s~~~l~sgs~Dg--~I~iwDl~~~~~~~ 969 (1094)
-....+.|+|||+.++....| ..+. +.+ ... .+..+.+. ..|..+. .+.++|+.+++...
T Consensus 97 EEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YP----k~G~~np~v~l~v~~~~~~~~~~ 172 (353)
T PF00930_consen 97 EEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYP----KAGDPNPRVSLFVVDLASGKTTE 172 (353)
T ss_dssp HHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE------BTTS---EEEEEEEESSSTCCCE
T ss_pred ccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccC----CCCCcCCceEEEEEECCCCcEEE
Confidence 113456699999999887766 2222 221 111 12222221 0112222 46678998887642
Q ss_pred EeccceeecCCCCCeEEEEEeCCcc-E-EEEEECCCC--EEEEEECCCCeEEEEec--CCCCE---EEEEEe-CC---EE
Q 001349 970 IQTGHRKLLGKANPVHALQVHNGLV-Y-TASTSLDGA--AVKMWSTSNYNMVGSLP--TLSEV---RAMVVS-SE---LV 1036 (1094)
Q Consensus 970 ~~~~~~~~~~h~~~V~sl~fs~~~~-~-las~s~Dg~--~I~iwd~~~~~~~~~~~--~~~~v---~~l~~s-pd---~l 1036 (1094)
.... ........-+..+.|.+++. + +...+.+.+ .+.++|..++....... ....| ....+. ++ ++
T Consensus 173 ~~~~-~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l 251 (353)
T PF00930_consen 173 LDPP-NSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFL 251 (353)
T ss_dssp E----HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEE
T ss_pred eeec-cccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEE
Confidence 2111 11123345688999988776 3 333344433 56667777665433332 33322 234443 44 56
Q ss_pred EEEEcCCe--EEEEECCCCcEEEEecccCCcceEE-EEEcCCCCEEE-EEeC
Q 001349 1037 YLGCKGGT--VEIWDQKRQIRIETLQTGTSGKVQC-MALDDNEEFLV-IGTS 1084 (1094)
Q Consensus 1037 ~sgs~dg~--I~vwd~~t~~~~~~l~~~h~~~I~~-l~~Spdg~~L~-sgs~ 1084 (1094)
.....+|. |++++...+. ...+. ...-.|.. +.|+++++.|+ ++..
T Consensus 252 ~~s~~~G~~hly~~~~~~~~-~~~lT-~G~~~V~~i~~~d~~~~~iyf~a~~ 301 (353)
T PF00930_consen 252 WISERDGYRHLYLYDLDGGK-PRQLT-SGDWEVTSILGWDEDNNRIYFTANG 301 (353)
T ss_dssp EEEETTSSEEEEEEETTSSE-EEESS--SSS-EEEEEEEECTSSEEEEEESS
T ss_pred EEEEcCCCcEEEEEcccccc-eeccc-cCceeecccceEcCCCCEEEEEecC
Confidence 66667775 4555666555 34553 23335644 67888877654 5544
No 429
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.98 E-value=0.0032 Score=70.39 Aligned_cols=44 Identities=23% Similarity=0.524 Sum_probs=37.7
Q ss_pred ceeccCccccccCcE----EcCCcccccHHhHHHHHHhCCCCCCCCCcCCC
Q 001349 163 DFVCPITTHIFDDPV----TLETGQTYERRAIQEWIERGNSSCPITRQKLS 209 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv----~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~ 209 (1094)
--+||+|++-|.+-+ ++.|-|+|=..|+..|+.. +||+||....
T Consensus 175 LPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~---scpvcR~~q~ 222 (493)
T KOG0804|consen 175 LPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS---SCPVCRYCQS 222 (493)
T ss_pred CCCcchhHhhcCccccceeeeecccccchHHHhhcccC---cChhhhhhcC
Confidence 347999999999876 4689999999999999854 7999997665
No 430
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.97 E-value=0.95 Score=48.66 Aligned_cols=240 Identities=14% Similarity=0.141 Sum_probs=125.7
Q ss_pred EEEEeCC---EEEEEECCCe-EEEEecCCCcceeEEE--------ecccCCCeEEEEEecCCCEEEEEeCC-----CcEE
Q 001349 818 SIACFRD---KIFSGHSDGT-IKVWTGRGSILHLIQQ--------IREHTKAVTGLAILQSGEMLYSGSLD-----KTAR 880 (1094)
Q Consensus 818 ~l~fspd---~LaSgs~Dg~-I~vWd~~t~~~~~~~~--------l~~H~~~V~sv~fspdg~~LaSgs~D-----gtI~ 880 (1094)
.|+|+|. -++.+-.-|+ ..++|..+.. ...+ |.+|. .|||||.+|+..-.| |.|-
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~--~pv~~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViG 143 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQ--EPVTLVSQEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIG 143 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCc--CcEEEecccCceeeccc------ccCCCCcEEEeecCCCCCCCceEE
Confidence 3555553 3444444444 4567877763 3322 33443 599999999987554 7899
Q ss_pred EEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEE
Q 001349 881 VWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEI 960 (1094)
Q Consensus 881 vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iw 960 (1094)
|||.+.+-.+.-....+. ..+..+.+.+||+.+++.+. .|.... .|..-.+=.-+..-++.+.
T Consensus 144 vYd~r~~fqrvgE~~t~G-------iGpHev~lm~DGrtlvvanG--GIethp--------dfgR~~lNldsMePSlvll 206 (366)
T COG3490 144 VYDAREGFQRVGEFSTHG-------IGPHEVTLMADGRTLVVANG--GIETHP--------DFGRTELNLDSMEPSLVLL 206 (366)
T ss_pred EEecccccceecccccCC-------cCcceeEEecCCcEEEEeCC--ceeccc--------ccCccccchhhcCccEEEE
Confidence 999986432222222222 23334458999998877543 222110 0000112223344556666
Q ss_pred ECCCCceeEEeccceeec--CCCCCeEEEEEeCCccEEEEEECCCC----EEEEEECCCCeEEEEecC--------CCCE
Q 001349 961 DLATGTFATIQTGHRKLL--GKANPVHALQVHNGLVYTASTSLDGA----AVKMWSTSNYNMVGSLPT--------LSEV 1026 (1094)
Q Consensus 961 Dl~~~~~~~~~~~~~~~~--~h~~~V~sl~fs~~~~~las~s~Dg~----~I~iwd~~~~~~~~~~~~--------~~~v 1026 (1094)
|..+|..+.. .++. -+.-.|.-++..+|+...+.+-..|- ---+=-...++.+.-+.- ...|
T Consensus 207 d~atG~liek----h~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYi 282 (366)
T COG3490 207 DAATGNLIEK----HTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYI 282 (366)
T ss_pred eccccchhhh----ccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhh
Confidence 7677766532 1121 23456778888888877766644330 000111122333333321 2446
Q ss_pred EEEEEeCC--EEEEE-EcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEE
Q 001349 1027 RAMVVSSE--LVYLG-CKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAW 1091 (1094)
Q Consensus 1027 ~~l~~spd--~l~sg-s~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iW 1091 (1094)
-+++.+.+ +++.. -..+...+||..+|..+..-.- .....++- .+.-++..+.+|.|.++
T Consensus 283 gsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l---~daaGva~--~~~gf~vssg~G~~~~~ 345 (366)
T COG3490 283 GSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAAL---PDAAGVAA--AKGGFAVSSGQGRIIFY 345 (366)
T ss_pred hheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccc---ccccccee--ccCceEEecCCceEEec
Confidence 67777754 44443 4567788999999987765421 12233333 23335555667776643
No 431
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.96 E-value=0.005 Score=63.24 Aligned_cols=52 Identities=17% Similarity=0.484 Sum_probs=45.2
Q ss_pred CceeccCccccccCcE----EcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCC
Q 001349 162 KDFVCPITTHIFDDPV----TLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLP 214 (1094)
Q Consensus 162 ~~~~CpIc~~~~~dPv----~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~ 214 (1094)
..+.||+|.+.+.+.+ +-+|||.||..|.++.+.. ...||+|..++...+++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~-D~v~pv~d~plkdrdiI 275 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK-DMVDPVTDKPLKDRDII 275 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc-cccccCCCCcCcccceE
Confidence 4799999999999854 3499999999999998876 55799999999998886
No 432
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.81 E-value=2.3 Score=49.71 Aligned_cols=216 Identities=14% Similarity=0.185 Sum_probs=130.8
Q ss_pred cccccCc-EEEEeeCCCCeEEEeCCc--cee-ecccCCCcEEEEEEeCC--EEEEEEC---CCeEEEEecCCCcceeEEE
Q 001349 780 PLAFEMV-KVLSNGHDSSADFWNHRE--LVH-VDSSENGKVLSIACFRD--KIFSGHS---DGTIKVWTGRGSILHLIQQ 850 (1094)
Q Consensus 780 ~~~~d~~-~l~s~s~dg~I~vWd~~~--~~~-~~~~h~~~V~~l~fspd--~LaSgs~---Dg~I~vWd~~t~~~~~~~~ 850 (1094)
.+.+.+. ..++...++.|.+.|... ... ...+. ....++++++ .++.+.. ++++.+.|..++ ..+.+
T Consensus 80 ~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~--~~~~~ 155 (381)
T COG3391 80 AVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN--KVTAT 155 (381)
T ss_pred eeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCC--eEEEE
Confidence 4455566 445555568899998552 111 12222 5567888875 4444433 788999998888 55555
Q ss_pred ecccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeE
Q 001349 851 IREHTKAVTGLAILQSGEMLYSGS-LDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKT 929 (1094)
Q Consensus 851 l~~H~~~V~sv~fspdg~~LaSgs-~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i 929 (1094)
...-..+ ..++++|+|+.++.+. .+++|.+.|..+..... ........+.-.+..+.+.|+|..+.+....
T Consensus 156 ~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~----~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~--- 227 (381)
T COG3391 156 IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR----GSVGSLVGVGTGPAGIAVDPDGNRVYVANDG--- 227 (381)
T ss_pred EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec----cccccccccCCCCceEEECCCCCEEEEEecc---
Confidence 4433334 8899999999666665 78999999977653221 1111112222233445578888754332211
Q ss_pred EEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEE
Q 001349 930 KLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMW 1009 (1094)
Q Consensus 930 ~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iw 1009 (1094)
+.++.+...|..++....... ..+.. ....+.++|++.++......++.+.+-
T Consensus 228 ----------------------~~~~~v~~id~~~~~v~~~~~----~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vi 280 (381)
T COG3391 228 ----------------------SGSNNVLKIDTATGNVTATDL----PVGSG-APRGVAVDPAGKAAYVANSQGGTVSVI 280 (381)
T ss_pred ----------------------CCCceEEEEeCCCceEEEecc----ccccC-CCCceeECCCCCEEEEEecCCCeEEEE
Confidence 114688888888877653200 11111 345678889988887775555699999
Q ss_pred ECCCCeEEEEecCCC----CEEEEEEeCC
Q 001349 1010 STSNYNMVGSLPTLS----EVRAMVVSSE 1034 (1094)
Q Consensus 1010 d~~~~~~~~~~~~~~----~v~~l~~spd 1034 (1094)
|..+......+.... .+..+++.+.
T Consensus 281 d~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 281 DGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred eCCCCceeeeecccccccccceeccceee
Confidence 999888877766332 3555555544
No 433
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.80 E-value=0.007 Score=66.38 Aligned_cols=64 Identities=20% Similarity=0.456 Sum_probs=46.5
Q ss_pred CceeccCccccccC--cEE--cCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChh---HHHHHHHHHH
Q 001349 162 KDFVCPITTHIFDD--PVT--LETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTN---YVLKRLIASW 227 (1094)
Q Consensus 162 ~~~~CpIc~~~~~d--Pv~--~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN---~~l~~~i~~~ 227 (1094)
..|.|||++..|.. +++ .+|||.|+..||.+.- ....||.|.+++...+++.-| ..+..+.+.+
T Consensus 112 ~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI~Lnp~~ee~~~l~~~~ 182 (260)
T PF04641_consen 112 GRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDIIPLNPPEEELEKLRERM 182 (260)
T ss_pred ceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEEEecCCccHHHHHHHHH
Confidence 48999999999964 333 3999999999999873 244699999999987754223 3444444444
No 434
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.73 E-value=3.9 Score=44.43 Aligned_cols=202 Identities=7% Similarity=0.061 Sum_probs=94.2
Q ss_pred EEecccCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCCCce-EEEEecccCccceeeeecCceEEEeeCCCeEEEEEeC
Q 001349 849 QQIREHTKAVTGLAILQSGE-MLYSGSLDKTARVWSIGNEEI-HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRN 926 (1094)
Q Consensus 849 ~~l~~H~~~V~sv~fspdg~-~LaSgs~DgtI~vWdi~~~~~-~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~ 926 (1094)
+.+.+-.+.+..++|+|+.+ ++++....+.|...+.+ |++ +.+... .......+. +..++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~-g~~D~EgI~-------y~g~~--------- 76 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLD-GFGDYEGIT-------YLGNG--------- 76 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-S-S-SSEEEEE-------E-STT---------
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCC-CCCCceeEE-------EECCC---------
Confidence 45566667799999999755 55555667778777765 432 222211 112222332 33333
Q ss_pred CeEEEEcCCCCceEEEEeCCEEEEEE-cCCeEEEEECCCCc--e-eEEeccc-eee-cCCCCCeEEEEEeCCccEEEEEE
Q 001349 927 GKTKLLNSSKYPKCLALVQGKVYCGC-QDGAIQEIDLATGT--F-ATIQTGH-RKL-LGKANPVHALQVHNGLVYTASTS 1000 (1094)
Q Consensus 927 g~i~l~~~~~~v~~l~~s~~~l~sgs-~Dg~I~iwDl~~~~--~-~~~~~~~-~~~-~~h~~~V~sl~fs~~~~~las~s 1000 (1094)
.++... .++.+.++++.... . ....... ..+ ..+...+-.++|++.+..+..+-
T Consensus 77 --------------------~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k 136 (248)
T PF06977_consen 77 --------------------RYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK 136 (248)
T ss_dssp --------------------EEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE
T ss_pred --------------------EEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe
Confidence 333333 35666666663221 1 0000000 001 12445688999998644444443
Q ss_pred CCCCEEEEEECCC---CeEEEEe-----c----CCCCEEEEEEeCC---EEEEEEcCCeEEEEECCCCcEEEEe--cccC
Q 001349 1001 LDGAAVKMWSTSN---YNMVGSL-----P----TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIRIETL--QTGT 1063 (1094)
Q Consensus 1001 ~Dg~~I~iwd~~~---~~~~~~~-----~----~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~~~~~~l--~~~h 1063 (1094)
.. .-..+|.+.. ....... . .-..+.+++++|. +++....+..|.++| .+|+.+..+ ..+.
T Consensus 137 E~-~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~ 214 (248)
T PF06977_consen 137 ER-KPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGF 214 (248)
T ss_dssp ES-SSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTG
T ss_pred CC-CChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcc
Confidence 33 2455555542 1111111 1 2355889999987 666777888999999 667766554 2221
Q ss_pred C------cceEEEEEcCCCCEEEEEeCCCcEEEE
Q 001349 1064 S------GKVQCMALDDNEEFLVIGTSDGRIQAW 1091 (1094)
Q Consensus 1064 ~------~~I~~l~~Spdg~~L~sgs~DG~I~iW 1091 (1094)
. ...-.|+|.++|++ +..++-+..++|
T Consensus 215 ~gl~~~~~QpEGIa~d~~G~L-YIvsEpNlfy~f 247 (248)
T PF06977_consen 215 HGLSKDIPQPEGIAFDPDGNL-YIVSEPNLFYRF 247 (248)
T ss_dssp GG-SS---SEEEEEE-TT--E-EEEETTTEEEEE
T ss_pred cCcccccCCccEEEECCCCCE-EEEcCCceEEEe
Confidence 1 25789999999964 445566665554
No 435
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.63 E-value=0.26 Score=61.40 Aligned_cols=75 Identities=27% Similarity=0.335 Sum_probs=58.9
Q ss_pred CCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 001349 813 NGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE 888 (1094)
Q Consensus 813 ~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~ 888 (1094)
.+.+.+.+.-.-.++.|+..|.|-..|..++ ..+...-..-.++|++++|+.||..++.|-.+|.|.+||+..++
T Consensus 89 ~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k 163 (1206)
T KOG2079|consen 89 AAGVISSAIVVVPIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAK 163 (1206)
T ss_pred CcceeeeeeeeeeEEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCc
Confidence 4556666666668999999999999988765 12222223346799999999999999999999999999999975
No 436
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.62 E-value=5.4 Score=47.02 Aligned_cols=84 Identities=11% Similarity=0.134 Sum_probs=52.6
Q ss_pred EeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcc
Q 001349 989 VHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGK 1066 (1094)
Q Consensus 989 fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~ 1066 (1094)
++.+....+....++ .+.+.+-...+. +...+++..|++||+ +++.-..+|.+.|.+..-.+.+..+..+-...
T Consensus 186 l~~~~~~~i~~~~g~-~i~~i~~~~~~~---i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~ 261 (410)
T PF04841_consen 186 LSSDRVVEILLANGE-TIYIIDENSFKQ---IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSP 261 (410)
T ss_pred eecCcceEEEEecCC-EEEEEEcccccc---ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCC
Confidence 344444444443333 566444332211 334578999999998 78888888999999877666666665444456
Q ss_pred eEEEEEcCCC
Q 001349 1067 VQCMALDDNE 1076 (1094)
Q Consensus 1067 I~~l~~Spdg 1076 (1094)
...+.|.-++
T Consensus 262 p~~~~WCG~d 271 (410)
T PF04841_consen 262 PKQMAWCGND 271 (410)
T ss_pred CcEEEEECCC
Confidence 6777776544
No 437
>PHA02713 hypothetical protein; Provisional
Probab=95.62 E-value=0.73 Score=56.63 Aligned_cols=86 Identities=8% Similarity=0.057 Sum_probs=45.1
Q ss_pred EEEEEECCCCe--EEEEecCCCCEEEEEEeCC-EEEEEEcC------CeEEEEECCC-Cc--EEEEecccCCcceEEEEE
Q 001349 1005 AVKMWSTSNYN--MVGSLPTLSEVRAMVVSSE-LVYLGCKG------GTVEIWDQKR-QI--RIETLQTGTSGKVQCMAL 1072 (1094)
Q Consensus 1005 ~I~iwd~~~~~--~~~~~~~~~~v~~l~~spd-~l~sgs~d------g~I~vwd~~t-~~--~~~~l~~~h~~~I~~l~~ 1072 (1094)
.+..||..+.+ .+..+.....-.+++...+ ..+.|+.+ ..+..||..+ .+ .+..+. ........+++
T Consensus 433 ~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~-~~r~~~~~~~~ 511 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTE-SRLSALHTILH 511 (557)
T ss_pred eEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccC-cccccceeEEE
Confidence 57778876643 2233322222223444445 44555543 3477899886 33 333332 12222222333
Q ss_pred cCCCCEEEEEeCCC--cEEEEeC
Q 001349 1073 DDNEEFLVIGTSDG--RIQAWGL 1093 (1094)
Q Consensus 1073 Spdg~~L~sgs~DG--~I~iWdl 1093 (1094)
+|++.++||.|| ++..||.
T Consensus 512 --~~~iyv~Gg~~~~~~~e~yd~ 532 (557)
T PHA02713 512 --DNTIMMLHCYESYMLQDTFNV 532 (557)
T ss_pred --CCEEEEEeeecceeehhhcCc
Confidence 688899999888 5666554
No 438
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.62 E-value=3.2 Score=46.62 Aligned_cols=225 Identities=12% Similarity=0.091 Sum_probs=113.0
Q ss_pred ccccccCcEEEEee----------CCCCeEEEeCCcceee-----cccCCC----cEEEEEEeCC----EEEEEECCCeE
Q 001349 779 SPLAFEMVKVLSNG----------HDSSADFWNHRELVHV-----DSSENG----KVLSIACFRD----KIFSGHSDGTI 835 (1094)
Q Consensus 779 ~~~~~d~~~l~s~s----------~dg~I~vWd~~~~~~~-----~~~h~~----~V~~l~fspd----~LaSgs~Dg~I 835 (1094)
..+++|++.+.+++ ..-.|.+||..+.... ...|.. .....+++.| ++.-.+---+|
T Consensus 41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SV 120 (342)
T PF06433_consen 41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSV 120 (342)
T ss_dssp EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEE
T ss_pred eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeE
Confidence 34566777665532 2346789998743211 111111 1122344443 22223334556
Q ss_pred EEEecCCCcceeEEEecccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECC-CCceEEEE--ec-ccCccceeeeecCce
Q 001349 836 KVWTGRGSILHLIQQIREHTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIG-NEEIHCVQ--VH-DIKDQIQNLAVSNSI 910 (1094)
Q Consensus 836 ~vWd~~t~~~~~~~~l~~H~~~V~sv~fsp-dg~~LaSgs~DgtI~vWdi~-~~~~~~~~--~~-~~~~~V~~v~~~~~~ 910 (1094)
.|-|+..+ +.+.++. ...++.+ -| .+..+.+-+.||++.-..++ .|+..... .+ ...+++..-
T Consensus 121 tVVDl~~~--kvv~ei~--~PGC~~i--yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~------ 188 (342)
T PF06433_consen 121 TVVDLAAK--KVVGEID--TPGCWLI--YPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEH------ 188 (342)
T ss_dssp EEEETTTT--EEEEEEE--GTSEEEE--EEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S-------
T ss_pred EEEECCCC--ceeeeec--CCCEEEE--EecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccc------
Confidence 66677766 4555553 1222222 23 23568899999999999888 44432111 11 111222111
Q ss_pred EEEeeCCCeEEEEEeCCeEEEEcCC------------------------CCceEEEEe--CCEEEEEEcC---C------
Q 001349 911 LCFIPQGAGIKVHLRNGKTKLLNSS------------------------KYPKCLALV--QGKVYCGCQD---G------ 955 (1094)
Q Consensus 911 ~~fspdg~~l~~~~~~g~i~l~~~~------------------------~~v~~l~~s--~~~l~sgs~D---g------ 955 (1094)
-.++..+..+...+.+|.+...+.. +.-.-++++ .+++++--.. |
T Consensus 189 ~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpg 268 (342)
T PF06433_consen 189 PAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPG 268 (342)
T ss_dssp -EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-E
T ss_pred cceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCc
Confidence 1133344444445555555544322 223345554 3566553221 1
Q ss_pred -eEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCC-ccEEEEEECCCCEEEEEECCCCeEEEEecC
Q 001349 956 -AIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG-LVYTASTSLDGAAVKMWSTSNYNMVGSLPT 1022 (1094)
Q Consensus 956 -~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~-~~~las~s~Dg~~I~iwd~~~~~~~~~~~~ 1022 (1094)
.|-+||+.+++.+...... .++.++.++.+ ..++.+.+..++.+.+||..+|+.++++..
T Consensus 269 teVWv~D~~t~krv~Ri~l~-------~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 269 TEVWVYDLKTHKRVARIPLE-------HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE-------EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred eEEEEEECCCCeEEEEEeCC-------CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 3777899999887543311 35778988855 446655554445999999999999999874
No 439
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.57 E-value=0.78 Score=54.26 Aligned_cols=166 Identities=18% Similarity=0.189 Sum_probs=85.5
Q ss_pred cEEEEeeCCCCeEEE-eCCcce-eecccCCCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEE
Q 001349 786 VKVLSNGHDSSADFW-NHRELV-HVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAI 863 (1094)
Q Consensus 786 ~~l~s~s~dg~I~vW-d~~~~~-~~~~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~f 863 (1094)
..+|+-..+++|.|+ +++... ..+.. ...+..+-. +.+|...+. +.|.+||+.++ +.++.+... +|..|.|
T Consensus 80 n~yAv~~~~~~I~I~kn~~~~~~k~i~~-~~~~~~If~-G~LL~~~~~-~~i~~yDw~~~--~~i~~i~v~--~vk~V~W 152 (443)
T PF04053_consen 80 NRYAVLESSSTIKIYKNFKNEVVKSIKL-PFSVEKIFG-GNLLGVKSS-DFICFYDWETG--KLIRRIDVS--AVKYVIW 152 (443)
T ss_dssp SEEEEE-TTS-EEEEETTEE-TT------SS-EEEEE--SSSEEEEET-TEEEEE-TTT----EEEEESS---E-EEEEE
T ss_pred ccEEEEECCCeEEEEEcCccccceEEcC-CcccceEEc-CcEEEEECC-CCEEEEEhhHc--ceeeEEecC--CCcEEEE
Confidence 345555557777775 333111 11111 112333322 444444444 48999999999 788888633 4899999
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCC------------ceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEE
Q 001349 864 LQSGEMLYSGSLDKTARVWSIGNE------------EIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKL 931 (1094)
Q Consensus 864 spdg~~LaSgs~DgtI~vWdi~~~------------~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l 931 (1094)
+++|++++-.+.| ++.|++.+.. ....+ ++....|.+..|..+...|+..+ .+.. ..+|...+
T Consensus 153 s~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~--~E~~~~IkSg~W~~d~fiYtT~~-~lkY-l~~Ge~~~ 227 (443)
T PF04053_consen 153 SDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELI--HEISERIKSGCWVEDCFIYTTSN-HLKY-LVNGETGI 227 (443)
T ss_dssp -TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEE--EEE-S--SEEEEETTEEEEE-TT-EEEE-EETTEEEE
T ss_pred ECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEE--EEecceeEEEEEEcCEEEEEcCC-eEEE-EEcCCcce
Confidence 9999999999876 6888876654 22222 23366788888877766666665 5554 44444433
Q ss_pred EcC-CCCceEEEEeC--CEEEEEEcCCeEEEEECC
Q 001349 932 LNS-SKYPKCLALVQ--GKVYCGCQDGAIQEIDLA 963 (1094)
Q Consensus 932 ~~~-~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~ 963 (1094)
..+ ...+.-+.+.+ ++++....|+.|..+.+.
T Consensus 228 i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 228 IAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp EEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred EEEcCCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 332 44555566666 778888888887777654
No 440
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.0025 Score=66.37 Aligned_cols=52 Identities=23% Similarity=0.532 Sum_probs=43.1
Q ss_pred ceeccCccccccCcE----------EcCCcccccHHhHHHHHHhC-CCCCCCCCcCCCCCCCC
Q 001349 163 DFVCPITTHIFDDPV----------TLETGQTYERRAIQEWIERG-NSSCPITRQKLSSTKLP 214 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv----------~~~cGhtfc~~ci~~~~~~~-~~~CP~c~~~~~~~~~~ 214 (1094)
+-.|.||.+-+.+-+ .++|+|.|=..||+.|.--| ..+||-|++....+..+
T Consensus 224 d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmf 286 (328)
T KOG1734|consen 224 DSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMF 286 (328)
T ss_pred cchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhc
Confidence 678999999887766 67999999999999987654 45799999887766554
No 441
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.51 E-value=7.2 Score=46.04 Aligned_cols=237 Identities=9% Similarity=0.087 Sum_probs=117.9
Q ss_pred cccccccCcEEEEe-eCC----CCeEEEeCCcceeecccCCC-cEEEEEEeCC---EEEEEECC----------CeEEEE
Q 001349 778 YSPLAFEMVKVLSN-GHD----SSADFWNHRELVHVDSSENG-KVLSIACFRD---KIFSGHSD----------GTIKVW 838 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~-s~d----g~I~vWd~~~~~~~~~~h~~-~V~~l~fspd---~LaSgs~D----------g~I~vW 838 (1094)
...+++++++++.+ +.. ..++++|+.+.......-.. ....+.|.++ ++++...+ ..|+.|
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~ 207 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRH 207 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEE
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEE
Confidence 45677899988764 333 45899999754333222111 1223999987 45554332 248888
Q ss_pred ecCCCcceeEEEecccCCC--eEEEEEecCCCEEEEEeCC----CcEEEEECCCC-----ceEEEEecccCccceeeeec
Q 001349 839 TGRGSILHLIQQIREHTKA--VTGLAILQSGEMLYSGSLD----KTARVWSIGNE-----EIHCVQVHDIKDQIQNLAVS 907 (1094)
Q Consensus 839 d~~t~~~~~~~~l~~H~~~--V~sv~fspdg~~LaSgs~D----gtI~vWdi~~~-----~~~~~~~~~~~~~V~~v~~~ 907 (1094)
++.+....-...+.+.... ...+..++|+++++..+.. ..+.+-|...+ ....+... ...+...
T Consensus 208 ~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~--~~~~~~~--- 282 (414)
T PF02897_consen 208 KLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPR--EDGVEYY--- 282 (414)
T ss_dssp ETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEES--SSS-EEE---
T ss_pred ECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCC--CCceEEE---
Confidence 9888744423444443333 5678889999987755433 23666676664 12222211 1111110
Q ss_pred CceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEE----EcCCeEEEEECCCCceeEEeccceeecCCCC-
Q 001349 908 NSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCG----CQDGAIQEIDLATGTFATIQTGHRKLLGKAN- 982 (1094)
Q Consensus 908 ~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sg----s~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~- 982 (1094)
+...++.++.- ..++.|...++.+....... ..+..+..
T Consensus 283 ---------------------------------v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~---~~l~~~~~~ 326 (414)
T PF02897_consen 283 ---------------------------------VDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWW---TVLIPEDED 326 (414)
T ss_dssp ---------------------------------EEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEE---EEEE--SSS
T ss_pred ---------------------------------EEccCCEEEEeeCCCCCCcEEEEecccccccccce---eEEcCCCCc
Confidence 11111222221 23355666676665521000 12333433
Q ss_pred -CeEEEEEeCCccEEEEEECCC-CEEEEEECCCCeEEEEec--CCCCEEEEEEeCC----EEEEEEc--CCeEEEEECCC
Q 001349 983 -PVHALQVHNGLVYTASTSLDG-AAVKMWSTSNYNMVGSLP--TLSEVRAMVVSSE----LVYLGCK--GGTVEIWDQKR 1052 (1094)
Q Consensus 983 -~V~sl~fs~~~~~las~s~Dg-~~I~iwd~~~~~~~~~~~--~~~~v~~l~~spd----~l~sgs~--dg~I~vwd~~t 1052 (1094)
.+..+....+..++. ...++ ..|++||+..+.....+. ..+.|..+...++ ++...|. -++++.||+.+
T Consensus 327 ~~l~~~~~~~~~Lvl~-~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t 405 (414)
T PF02897_consen 327 VSLEDVSLFKDYLVLS-YRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLAT 405 (414)
T ss_dssp EEEEEEEEETTEEEEE-EEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTT
T ss_pred eeEEEEEEECCEEEEE-EEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence 355555555544433 33332 378999998455555554 3344555544343 3333333 36889999998
Q ss_pred CcEE
Q 001349 1053 QIRI 1056 (1094)
Q Consensus 1053 ~~~~ 1056 (1094)
++..
T Consensus 406 ~~~~ 409 (414)
T PF02897_consen 406 GELT 409 (414)
T ss_dssp TCEE
T ss_pred CCEE
Confidence 8753
No 442
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.49 E-value=1.8 Score=47.61 Aligned_cols=271 Identities=15% Similarity=0.208 Sum_probs=154.8
Q ss_pred hccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcChHHHHHHHHhc----------CCChHHHHHhh
Q 001349 322 LFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKGLLEAVVLIDLL----------RPSTRTLIEMD 391 (1094)
Q Consensus 322 L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g~~~Aa~~l~~L----------~~~~~~~~~~~ 391 (1094)
|-.+.+..+...+..+|..+....+.... .-+...++.+|.....++-.++.-+ ....++++..+
T Consensus 115 la~~~~~~~l~ksL~al~~lt~~qpdl~d-----a~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~ 189 (461)
T KOG4199|consen 115 LAESPNESVLKKSLEAINSLTHKQPDLFD-----AEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELK 189 (461)
T ss_pred HhhCCchhHHHHHHHHHHHhhcCCcchhc-----cccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 34566777777777777766555442221 1133455566655433333322222 22334556666
Q ss_pred hhHHHHHHHHh-ccccccccccCchhhHHHHHHHHhcCCc----ccccccchhhhccchhHHHHHHhhhcccHHHHHHHH
Q 001349 392 MMESLMTVIKK-KEEDFLKMCLKPKSVSVLLLGQMIGDSE----ESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAV 466 (1094)
Q Consensus 392 ~~~~Ll~~l~~-~~~~~~~~~~~~~~aa~~~l~~l~~~~~----~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 466 (1094)
.+|.++.+|.. |+.+..+-+ ..| +-.|++..| ..-..+++..|..+|++..|++.++.|---.-..-.
T Consensus 190 il~Li~~~l~~~gk~~~VRel----~~a---~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l 262 (461)
T KOG4199|consen 190 ILELILQVLNREGKTRTVREL----YDA---IRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSL 262 (461)
T ss_pred HHHHHHHHHcccCccHHHHHH----HHH---HHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHH
Confidence 66777755544 443222111 112 222333332 222358899999999999999999976543322223
Q ss_pred HHHHHHhhccCcchhhHhhhcCchhHHHHHHh-cCCchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHH
Q 001349 467 GILLRCMQEDGKCRNSIADKAELAPVMESFMA-ASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVY 545 (1094)
Q Consensus 467 ~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~ 545 (1094)
+.-+.-++-.+...+.|++.+.+..|+.++-+ +.+..|..+=+.|+-|..+ ++...+-..|-+.|+....-+++.-
T Consensus 263 ~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLral---AG~DsvKs~IV~~gg~~~ii~l~~~ 339 (461)
T KOG4199|consen 263 STTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRAL---AGSDSVKSTIVEKGGLDKIITLALR 339 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHH---hCCCchHHHHHHhcChHHHHHHHHH
Confidence 33355667777888899999999999998776 6666675554444444433 2233445556667777665555443
Q ss_pred HhhcCCc-cchhHHHHHHhhhcccCCC-CCCccHHHHHHHHHHHhhcCCC-hHHHHHHHHHHHhcccc
Q 001349 546 LQTANHD-QCPVVAGLLLQLDLLAEPR-KMSIYREEAIDTLISCLRNSDY-PAAQLAAAKTIVSLQGR 610 (1094)
Q Consensus 546 l~~~~~~-~~~~~a~~l~~l~~~~~~~-~~~~~reea~~~~~~~l~~~~~-~~~~~~~~~~~~~l~g~ 610 (1094)
-+..|.- |+.+++.-.|- |-.|. ...++-.++-+..+.+|+..-. ..+|..|+-.+-|+.-|
T Consensus 340 h~~~p~Vi~~~~a~i~~l~---LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~r 404 (461)
T KOG4199|consen 340 HSDDPLVIQEVMAIISILC---LRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVR 404 (461)
T ss_pred cCCChHHHHHHHHHHHHHH---hcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh
Confidence 3333222 22222222222 23443 2334455677888999998774 36999999888887755
No 443
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=0.0076 Score=67.44 Aligned_cols=49 Identities=18% Similarity=0.406 Sum_probs=40.3
Q ss_pred CCceeccCccccccCcE-----E---cCCcccccHHhHHHHHHhCC------CCCCCCCcCCC
Q 001349 161 PKDFVCPITTHIFDDPV-----T---LETGQTYERRAIQEWIERGN------SSCPITRQKLS 209 (1094)
Q Consensus 161 ~~~~~CpIc~~~~~dPv-----~---~~cGhtfc~~ci~~~~~~~~------~~CP~c~~~~~ 209 (1094)
-++..|-||++...+++ . .+|-|+||-.||..|-...+ ..||.||....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 34899999999999988 3 46999999999999985433 46999997643
No 444
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.47 E-value=0.73 Score=56.62 Aligned_cols=215 Identities=16% Similarity=0.259 Sum_probs=110.0
Q ss_pred EEEEEECC------CeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCC------CcEEEEECCCCceEEE
Q 001349 825 KIFSGHSD------GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD------KTARVWSIGNEEIHCV 892 (1094)
Q Consensus 825 ~LaSgs~D------g~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~D------gtI~vWdi~~~~~~~~ 892 (1094)
+++.|+.+ .++..+|..++.+.....+.. ...-.++++. +|...++||.| .++..||..++++...
T Consensus 287 l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~-~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~ 364 (571)
T KOG4441|consen 287 LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPS-PRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPV 364 (571)
T ss_pred EEEECCCCCCCcccceeEEecCCcCcEeecCCCCc-ccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceecc
Confidence 45555555 467888988886666555542 2334445554 56788888888 3456677776643221
Q ss_pred EecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCC-----eEEEEECCCCce
Q 001349 893 QVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDG-----AIQEIDLATGTF 967 (1094)
Q Consensus 893 ~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg-----~I~iwDl~~~~~ 967 (1094)
........-.++ ..-+|.. .++|+.|| +|..||..+.+.
T Consensus 365 a~M~~~R~~~~v--------~~l~g~i----------------------------YavGG~dg~~~l~svE~YDp~~~~W 408 (571)
T KOG4441|consen 365 APMNTKRSDFGV--------AVLDGKL----------------------------YAVGGFDGEKSLNSVECYDPVTNKW 408 (571)
T ss_pred CCccCcccccee--------EEECCEE----------------------------EEEeccccccccccEEEecCCCCcc
Confidence 111100000000 1112222 45555554 588899888765
Q ss_pred eEEeccceeecCCCCCe--EEEEEeCCccEEEEEECCC-----CEEEEEECCCCe--EEEEecCCCCEEEEEEeCC-EEE
Q 001349 968 ATIQTGHRKLLGKANPV--HALQVHNGLVYTASTSLDG-----AAVKMWSTSNYN--MVGSLPTLSEVRAMVVSSE-LVY 1037 (1094)
Q Consensus 968 ~~~~~~~~~~~~h~~~V--~sl~fs~~~~~las~s~Dg-----~~I~iwd~~~~~--~~~~~~~~~~v~~l~~spd-~l~ 1037 (1094)
...-+ ..... ..++...+..| +.|+.++ .++..||..++. .+..+.....-..++.-.+ ..+
T Consensus 409 ~~va~-------m~~~r~~~gv~~~~g~iY-i~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYv 480 (571)
T KOG4441|consen 409 TPVAP-------MLTRRSGHGVAVLGGKLY-IIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYV 480 (571)
T ss_pred cccCC-------CCcceeeeEEEEECCEEE-EEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEE
Confidence 42211 11112 22333344444 4444343 268888887654 2333332222233555555 666
Q ss_pred EEEcCC-----eEEEEECCCCcEEEEec-ccCCcceEEEEEcCCCCEEEEEeCCCc
Q 001349 1038 LGCKGG-----TVEIWDQKRQIRIETLQ-TGTSGKVQCMALDDNEEFLVIGTSDGR 1087 (1094)
Q Consensus 1038 sgs~dg-----~I~vwd~~t~~~~~~l~-~~h~~~I~~l~~Spdg~~L~sgs~DG~ 1087 (1094)
+|+.|+ +|..||..+.+-...-. ......+....+ +++..++|+.||.
T Consensus 481 vGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 481 VGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGN 534 (571)
T ss_pred ECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCc
Confidence 677665 37889988765332211 112222222222 5777888888874
No 445
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.0074 Score=65.01 Aligned_cols=48 Identities=15% Similarity=0.167 Sum_probs=41.4
Q ss_pred CceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCC
Q 001349 162 KDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSS 210 (1094)
Q Consensus 162 ~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~ 210 (1094)
+|-.||||..-=..+|..||||.-|+.||.+|+-+ .+.|=.|+.....
T Consensus 421 Ed~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN-~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 421 EDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN-CKRCFFCKTTVID 468 (489)
T ss_pred ccccCcceecccchhhccCCCCchHHHHHHHHHhc-CCeeeEecceeee
Confidence 47899999998888999999999999999999987 4469999876553
No 446
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=95.41 E-value=0.29 Score=61.01 Aligned_cols=141 Identities=16% Similarity=0.211 Sum_probs=94.0
Q ss_pred EEEEECCCeEEEEecCCCcceeEEEecccCCC-eEEEEEecC-------CCEEEEEeCCCcEEEEECCCCceEEEEeccc
Q 001349 826 IFSGHSDGTIKVWTGRGSILHLIQQIREHTKA-VTGLAILQS-------GEMLYSGSLDKTARVWSIGNEEIHCVQVHDI 897 (1094)
Q Consensus 826 LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~-V~sv~fspd-------g~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~ 897 (1094)
|........|+-.|+..| +.+..+..|... |..+ .|+ +...+.|-.+..+..||.+-...+.+...
T Consensus 497 l~~~~~~~~ly~mDLe~G--KVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~-- 570 (794)
T PF08553_consen 497 LLDPNNPNKLYKMDLERG--KVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQ-- 570 (794)
T ss_pred eecCCCCCceEEEecCCC--cEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeecc--
Confidence 444445678888999999 788888877654 5544 343 33456677778899999885321111100
Q ss_pred CccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEe-CCEEEEEEcCCeEEEEECCCCceeEEecccee
Q 001349 898 KDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALV-QGKVYCGCQDGAIQEIDLATGTFATIQTGHRK 976 (1094)
Q Consensus 898 ~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s-~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~ 976 (1094)
.+.+.......|++.. +|+|++|+.+|.|++||- .|... ...
T Consensus 571 -------------------------------~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~A-----KT~ 613 (794)
T PF08553_consen 571 -------------------------------SKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRA-----KTA 613 (794)
T ss_pred -------------------------------ccccccCCCceEEEecCCceEEEEeCCCcEEeecc-cchhh-----hhc
Confidence 0112233445566655 478999999999999994 33221 134
Q ss_pred ecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEEC
Q 001349 977 LLGKANPVHALQVHNGLVYTASTSLDGAAVKMWST 1011 (1094)
Q Consensus 977 ~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~ 1011 (1094)
+.+-..+|..|..+.||.++++.+. ..+.++++
T Consensus 614 lp~lG~pI~~iDvt~DGkwilaTc~--tyLlLi~t 646 (794)
T PF08553_consen 614 LPGLGDPIIGIDVTADGKWILATCK--TYLLLIDT 646 (794)
T ss_pred CCCCCCCeeEEEecCCCcEEEEeec--ceEEEEEE
Confidence 5566799999999999999888764 37888886
No 447
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.26 E-value=0.051 Score=56.42 Aligned_cols=100 Identities=17% Similarity=0.212 Sum_probs=68.1
Q ss_pred CcEEEEeeCCCCeEEEeCC---cceeecccCCCcEEEEEEeC-C--EEEEEECCCeEEEEecCCCcceeEEEecccC-CC
Q 001349 785 MVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFR-D--KIFSGHSDGTIKVWTGRGSILHLIQQIREHT-KA 857 (1094)
Q Consensus 785 ~~~l~s~s~dg~I~vWd~~---~~~~~~~~h~~~V~~l~fsp-d--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~-~~ 857 (1094)
+..++.|+.+|.|.+|++. ........-...|.++.-.. + +..+++.||.|+.|++.-+ +.+.....|+ .+
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~--k~~g~~g~h~~~~ 147 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN--KVLGYVGQHNFES 147 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccC--ceeeeeccccCCC
Confidence 5688999999999999987 22222222333444443333 3 8999999999999999877 5666666677 45
Q ss_pred eEEEEEecCCCEEEEE--eCCCcEEEEECCC
Q 001349 858 VTGLAILQSGEMLYSG--SLDKTARVWSIGN 886 (1094)
Q Consensus 858 V~sv~fspdg~~LaSg--s~DgtI~vWdi~~ 886 (1094)
+.....+..+..++.+ |.|..++.|++..
T Consensus 148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 148 GEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cceeEEecCCceEEeeccccchhhhhcchhh
Confidence 5555555566666666 6677777777654
No 448
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=95.23 E-value=0.5 Score=61.59 Aligned_cols=241 Identities=17% Similarity=0.113 Sum_probs=121.3
Q ss_pred HhhhHhhhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCCChHHHHHh
Q 001349 315 INGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPSTRTLIEM 390 (1094)
Q Consensus 315 ~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~~~~~~~~ 390 (1094)
++.+++.| .+.++.|.+.|+..|.++. ....++.|+.+|+.. +..|+..|..+....
T Consensus 623 ~~~L~~~L-~D~d~~VR~~Av~~L~~~~------------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~------ 683 (897)
T PRK13800 623 VAELAPYL-ADPDPGVRRTAVAVLTETT------------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVL------ 683 (897)
T ss_pred HHHHHHHh-cCCCHHHHHHHHHHHhhhc------------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc------
Confidence 34455555 4678899999999998773 122457777777554 455555665441100
Q ss_pred hhhHHHHHHHHhccccccccccCchhhHHHH-----------HHHHhcCCcccccccchhhhccchhHHHHHHhhhcccH
Q 001349 391 DMMESLMTVIKKKEEDFLKMCLKPKSVSVLL-----------LGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWA 459 (1094)
Q Consensus 391 ~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~-----------l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 459 (1094)
.-.+.|...|...+.. + +.+|+.. +..++...|.........++.+.+..+.|+..+...+.
T Consensus 684 ~~~~~L~~~L~~~d~~-V------R~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~ 756 (897)
T PRK13800 684 PPAPALRDHLGSPDPV-V------RAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENR 756 (897)
T ss_pred CchHHHHHHhcCCCHH-H------HHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCH
Confidence 0013444444332110 0 1111111 11222323222223334444444555667777777777
Q ss_pred HHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHHHHhcc-----------------ccch
Q 001349 460 EERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLN-----------------RRTF 522 (1094)
Q Consensus 460 ~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el~~~~-----------------r~~~ 522 (1094)
+-|..++..|...-... ...++.|+.++.......|..|+..|-++-... |..
T Consensus 757 ~VR~~aa~aL~~~~~~~---------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~- 826 (897)
T PRK13800 757 EVRIAVAKGLATLGAGG---------APAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQG- 826 (897)
T ss_pred HHHHHHHHHHHHhcccc---------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHH-
Confidence 77777776655331111 112355666666666666666666664442110 111
Q ss_pred hHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCChHHHHHHHH
Q 001349 523 NEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAK 602 (1094)
Q Consensus 523 ~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~~~~~reea~~~~~~~l~~~~~~~~~~~~~~ 602 (1094)
+.+.|. .-++-..+..|+..|+...+.=+--+|..|.++.. -..+++.|..+|... ...++..|++
T Consensus 827 Aa~aL~---~l~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~----------~~~a~~~L~~al~D~-d~~Vr~~A~~ 892 (897)
T PRK13800 827 AARALA---GAAADVAVPALVEALTDPHLDVRKAAVLALTRWPG----------DPAARDALTTALTDS-DADVRAYARR 892 (897)
T ss_pred HHHHHH---hccccchHHHHHHHhcCCCHHHHHHHHHHHhccCC----------CHHHHHHHHHHHhCC-CHHHHHHHHH
Confidence 222222 22233344446666655555555566666666421 245667777677744 4567888887
Q ss_pred HHH
Q 001349 603 TIV 605 (1094)
Q Consensus 603 ~~~ 605 (1094)
+|.
T Consensus 893 aL~ 895 (897)
T PRK13800 893 ALA 895 (897)
T ss_pred HHh
Confidence 774
No 449
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.21 E-value=0.41 Score=58.26 Aligned_cols=126 Identities=10% Similarity=0.070 Sum_probs=76.2
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCC
Q 001349 856 KAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS 935 (1094)
Q Consensus 856 ~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~ 935 (1094)
....-+.-|.-++.-++-+...++.|||.+.+.+.....+...+.|.++.|. +.|+|+.+...+..+.+.++...
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWt-----st~d~qsiLaVGf~~~v~l~~Q~ 104 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWT-----STPDGQSILAVGFPHHVLLYTQL 104 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceee-----ecCCCCEEEEEEcCcEEEEEEcc
Confidence 3444555555455444444556799999999876666666778889999865 67888876666666655554321
Q ss_pred CCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCC-CCeEEEEEeCCccEEEEEECCCCEEEEEECC
Q 001349 936 KYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKA-NPVHALQVHNGLVYTASTSLDGAAVKMWSTS 1012 (1094)
Q Consensus 936 ~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~-~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~ 1012 (1094)
. ||..+..+....-....+..|+ .+|.+..|.++|.+++++ |+.+.|+|-.
T Consensus 105 R-----------------------~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s---GNqlfv~dk~ 156 (631)
T PF12234_consen 105 R-----------------------YDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS---GNQLFVFDKW 156 (631)
T ss_pred c-----------------------hhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe---CCEEEEECCC
Confidence 1 1111111100000001112222 478899999999988877 5689999753
No 450
>PRK09687 putative lyase; Provisional
Probab=95.20 E-value=1.2 Score=49.56 Aligned_cols=221 Identities=13% Similarity=0.049 Sum_probs=128.2
Q ss_pred hhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcC-----hHHHHHHHHhcCCChH
Q 001349 311 KPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG-----LLEAVVLIDLLRPSTR 385 (1094)
Q Consensus 311 ~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g-----~~~Aa~~l~~L~~~~~ 385 (1094)
.+.++..+.. |..+.++.+...++.+|..|....+. ....++.|..++... ...|+.+|..+.....
T Consensus 52 ~~~~~~~l~~-ll~~~d~~vR~~A~~aLg~lg~~~~~-------~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~ 123 (280)
T PRK09687 52 GQDVFRLAIE-LCSSKNPIERDIGADILSQLGMAKRC-------QDNVFNILNNLALEDKSACVRASAINATGHRCKKNP 123 (280)
T ss_pred cchHHHHHHH-HHhCCCHHHHHHHHHHHHhcCCCccc-------hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccc
Confidence 3445565555 56678999999999999998543321 112446666564332 4577778887754332
Q ss_pred HHHHhhhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHH
Q 001349 386 TLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAA 465 (1094)
Q Consensus 386 ~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 465 (1094)
+- ....+..|...+...+ . .-+-+++..|.. +-...+++.|+..++..+..-|..|
T Consensus 124 ~~-~~~a~~~l~~~~~D~~-~------~VR~~a~~aLg~----------------~~~~~ai~~L~~~L~d~~~~VR~~A 179 (280)
T PRK09687 124 LY-SPKIVEQSQITAFDKS-T------NVRFAVAFALSV----------------INDEAAIPLLINLLKDPNGDVRNWA 179 (280)
T ss_pred cc-chHHHHHHHHHhhCCC-H------HHHHHHHHHHhc----------------cCCHHHHHHHHHHhcCCCHHHHHHH
Confidence 11 0111122333322221 1 113344444432 2455688999999999999999988
Q ss_pred HHHHHHHhhccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHH
Q 001349 466 VGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVY 545 (1094)
Q Consensus 466 ~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~ 545 (1094)
+..|-.. .. ......++|+.+|.......|..|+..|-.+ +-...+..+++.++.+
T Consensus 180 ~~aLg~~-~~--------~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~---~~~~av~~Li~~L~~~------------ 235 (280)
T PRK09687 180 AFALNSN-KY--------DNPDIREAFVAMLQDKNEEIRIEAIIGLALR---KDKRVLSVLIKELKKG------------ 235 (280)
T ss_pred HHHHhcC-CC--------CCHHHHHHHHHHhcCCChHHHHHHHHHHHcc---CChhHHHHHHHHHcCC------------
Confidence 8877644 10 0123456788888777888888888877653 1111222333333332
Q ss_pred HhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 001349 546 LQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTI 604 (1094)
Q Consensus 546 l~~~~~~~~~~~a~~l~~l~~~~~~~~~~~~reea~~~~~~~l~~~~~~~~~~~~~~~~ 604 (1094)
. -+--++..|.++.- ++|+..|...+.......++..+-.+|
T Consensus 236 ----~--~~~~a~~ALg~ig~-----------~~a~p~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 236 ----T--VGDLIIEAAGELGD-----------KTLLPVLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred ----c--hHHHHHHHHHhcCC-----------HhHHHHHHHHHhhCCChhHHHHHHHHH
Confidence 1 11234555555544 579999999998666777777776655
No 451
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.16 E-value=1.9 Score=49.68 Aligned_cols=111 Identities=7% Similarity=0.084 Sum_probs=60.6
Q ss_pred eEEEEEeCCccEEEEEECC-------------------CCEEEEEECCCCeEEEEecCC---CCEEEEEEeCC-----EE
Q 001349 984 VHALQVHNGLVYTASTSLD-------------------GAAVKMWSTSNYNMVGSLPTL---SEVRAMVVSSE-----LV 1036 (1094)
Q Consensus 984 V~sl~fs~~~~~las~s~D-------------------g~~I~iwd~~~~~~~~~~~~~---~~v~~l~~spd-----~l 1036 (1094)
-+.+-++|....++|.... |+++.+||+.+.+.++++.-+ ..+..+.|..+ .+
T Consensus 183 gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gF 262 (461)
T PF05694_consen 183 GYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGF 262 (461)
T ss_dssp ---EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEE
T ss_pred CCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceE
Confidence 3456667777777776432 469999999999999999843 33556666544 34
Q ss_pred EEEEcCCeEEEEEC-CCCc----EEEEeccc----C------------CcceEEEEEcCCCCEEEEEeC-CCcEEEEeCC
Q 001349 1037 YLGCKGGTVEIWDQ-KRQI----RIETLQTG----T------------SGKVQCMALDDNEEFLVIGTS-DGRIQAWGLS 1094 (1094)
Q Consensus 1037 ~sgs~dg~I~vwd~-~t~~----~~~~l~~~----h------------~~~I~~l~~Spdg~~L~sgs~-DG~I~iWdls 1094 (1094)
+.+.-.++|..|-. ..++ .+..+... - ..-|++|.+|.|.++|..++. +|.|+.|||+
T Consensus 263 vg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDIS 342 (461)
T PF05694_consen 263 VGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDIS 342 (461)
T ss_dssp EEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-S
T ss_pred EEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecC
Confidence 44444555655544 3332 22222110 0 235899999999999987764 8999999985
No 452
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=95.12 E-value=0.0047 Score=72.87 Aligned_cols=48 Identities=17% Similarity=0.466 Sum_probs=39.7
Q ss_pred ceeccCccccccCcEE---cCCcccccHHhHHHHHHhCCCCCCCCCcCCCCC
Q 001349 163 DFVCPITTHIFDDPVT---LETGQTYERRAIQEWIERGNSSCPITRQKLSST 211 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~---~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~ 211 (1094)
.-.||+|+.-+.|-.+ ..|+|-||..||..|-.. ..+||.||..+...
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~-aqTCPiDR~EF~~v 173 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC-AQTCPVDRGEFGEV 173 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh-cccCchhhhhhhee
Confidence 4579999999998765 379999999999999876 55899999877543
No 453
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.12 E-value=0.53 Score=43.80 Aligned_cols=89 Identities=20% Similarity=0.303 Sum_probs=64.6
Q ss_pred cEEEEeeCCCCeEEEeCCcceeecccCCCcEEEEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEe
Q 001349 786 VKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAIL 864 (1094)
Q Consensus 786 ~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fs 864 (1094)
+.|+.|+.|..|++|+-...+.... .++.|++++-... .++.+..+|+|-+|+-... ++.++... .++++.+.
T Consensus 16 ~eLlvGs~D~~IRvf~~~e~~~Ei~-e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~R----lWRiKSK~-~~~~~~~~ 89 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGDEIVAEIT-ETDKVTSLCSLGGGRFAYALANGTVGVYDRSQR----LWRIKSKN-QVTSMAFY 89 (111)
T ss_pred ceEEEecCCcEEEEEeCCcEEEEEe-cccceEEEEEcCCCEEEEEecCCEEEEEeCcce----eeeeccCC-CeEEEEEE
Confidence 4899999999999999887665554 3567778877764 9999999999999987543 44554333 36666665
Q ss_pred c-C--C-CEEEEEeCCCcEE
Q 001349 865 Q-S--G-EMLYSGSLDKTAR 880 (1094)
Q Consensus 865 p-d--g-~~LaSgs~DgtI~ 880 (1094)
. + | .-|++|=.+|.|-
T Consensus 90 D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 90 DINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred cCCCCCceEEEEEecCCeEE
Confidence 3 3 2 3678887788664
No 454
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.02 E-value=4.2 Score=45.74 Aligned_cols=208 Identities=10% Similarity=0.084 Sum_probs=109.2
Q ss_pred EEEEeeCCCCeEEEeCCcceeecccCCCcEEEEEEe-CC-EEEEEECCCeEEEEecCCCcc-eeEEEec-cc-CCCeEEE
Q 001349 787 KVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACF-RD-KIFSGHSDGTIKVWTGRGSIL-HLIQQIR-EH-TKAVTGL 861 (1094)
Q Consensus 787 ~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~fs-pd-~LaSgs~Dg~I~vWd~~t~~~-~~~~~l~-~H-~~~V~sv 861 (1094)
.+.+--..+.|.-|+..........+.+.+.++... .+ .|+++ ..| +.+++..++.. ..+.... +. ...-+.+
T Consensus 39 L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~-~~g-~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~ 116 (307)
T COG3386 39 LLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIAC-EHG-VRLLDPDTGGKITLLAEPEDGLPLNRPNDG 116 (307)
T ss_pred EEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEE-ccc-cEEEeccCCceeEEeccccCCCCcCCCCce
Confidence 455556667888888764433333444445555444 34 44443 333 56677766532 2222221 11 1345678
Q ss_pred EEecCCCEEEEEeCC---------CcEEEEECC-CCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEE
Q 001349 862 AILQSGEMLYSGSLD---------KTARVWSIG-NEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKL 931 (1094)
Q Consensus 862 ~fspdg~~LaSgs~D---------gtI~vWdi~-~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l 931 (1094)
...|+|.+.++.... ..=.+|-++ .+....+ +..--..++.++||||++.+.+..
T Consensus 117 ~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l--------~~~~~~~~NGla~SpDg~tly~aD------- 181 (307)
T COG3386 117 VVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRL--------LDDDLTIPNGLAFSPDGKTLYVAD------- 181 (307)
T ss_pred eEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEe--------ecCcEEecCceEECCCCCEEEEEe-------
Confidence 888998877765440 011333333 2211111 111012345667888887643322
Q ss_pred EcCCCCceEEEEeCCEEEEEEcCCeEEEEECCC--CceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEE
Q 001349 932 LNSSKYPKCLALVQGKVYCGCQDGAIQEIDLAT--GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMW 1009 (1094)
Q Consensus 932 ~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~--~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iw 1009 (1094)
+..+.|+-|++.. +..... .....+....+..-.++...++.+-+++..+|..|..|
T Consensus 182 --------------------T~~~~i~r~~~d~~~g~~~~~-~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~ 240 (307)
T COG3386 182 --------------------TPANRIHRYDLDPATGPIGGR-RGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRF 240 (307)
T ss_pred --------------------CCCCeEEEEecCcccCccCCc-ceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEE
Confidence 2334555555431 111000 00011112334556777877777776555555589999
Q ss_pred ECCCCeEEEEecCC-CCEEEEEEeC
Q 001349 1010 STSNYNMVGSLPTL-SEVRAMVVSS 1033 (1094)
Q Consensus 1010 d~~~~~~~~~~~~~-~~v~~l~~sp 1033 (1094)
+.. ++.+..+.-+ ..+++++|-.
T Consensus 241 ~pd-G~l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 241 NPD-GKLLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred CCC-CcEEEEEECCCCCCccceEeC
Confidence 998 9999888855 7888888865
No 455
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.99 E-value=14 Score=46.42 Aligned_cols=107 Identities=9% Similarity=0.109 Sum_probs=68.0
Q ss_pred CeEEEEEeCC-ccEEEEEE---------CCCCEEEEEECCCCeEEEEe---cCCCCEEEEEEeCCEEEEEEcCCeEEEEE
Q 001349 983 PVHALQVHNG-LVYTASTS---------LDGAAVKMWSTSNYNMVGSL---PTLSEVRAMVVSSELVYLGCKGGTVEIWD 1049 (1094)
Q Consensus 983 ~V~sl~fs~~-~~~las~s---------~Dg~~I~iwd~~~~~~~~~~---~~~~~v~~l~~spd~l~sgs~dg~I~vwd 1049 (1094)
.+.+..|..| +.+++.|. +..+.|.+|....++.+... .-.+.+.++..-.+.++ ++-+..|++|+
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fngkll-A~In~~vrLye 854 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFNGKLL-AGINQSVRLYE 854 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhCCeEE-EecCcEEEEEE
Confidence 3555567655 55555542 11236777766653322222 23455555554444333 34567899999
Q ss_pred CCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEE
Q 001349 1050 QKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAW 1091 (1094)
Q Consensus 1050 ~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iW 1091 (1094)
..+.+.++.- ..|..++..+...-.|..++.|..-+.|.+-
T Consensus 855 ~t~~~eLr~e-~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll 895 (1096)
T KOG1897|consen 855 WTTERELRIE-CNISNPIIALDLQVKGDEIAVGDLMRSITLL 895 (1096)
T ss_pred ccccceehhh-hcccCCeEEEEEEecCcEEEEeeccceEEEE
Confidence 9988766655 5677889999999899999999887777653
No 456
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=94.96 E-value=0.036 Score=64.41 Aligned_cols=75 Identities=23% Similarity=0.373 Sum_probs=66.6
Q ss_pred CCCCCCceeccCccccccCcEEc-CCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHHHHhCCC
Q 001349 157 KHTPPKDFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPG 233 (1094)
Q Consensus 157 ~~~~~~~~~CpIc~~~~~dPv~~-~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~~~~~~ 233 (1094)
..++|++|.-|....+|+|||++ ..|-+..|.-|..++-. ..+.|.-|.+++.+++. ||-.|++-|..+....+.
T Consensus 848 ~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahlls-d~tDPFNRmPLtlddVt-pn~eLrekIn~f~k~k~~ 923 (929)
T COG5113 848 MGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLS-DGTDPFNRMPLTLDDVT-PNAELREKINRFYKCKGQ 923 (929)
T ss_pred ccCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhc-CCCCccccCCCchhhcC-CCHHHHHHHHHHHhcccc
Confidence 45789999999999999999998 58899999999998876 44799999999999997 999999999999875443
No 457
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=94.83 E-value=0.91 Score=49.49 Aligned_cols=210 Identities=15% Similarity=0.139 Sum_probs=124.1
Q ss_pred HHHHHHHHHhhhccccchHhHHHHHHHHHHHHHhccchHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccc
Q 001349 266 ITELKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRD 345 (1094)
Q Consensus 266 ~~~l~~~i~~L~~s~~l~~~e~a~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~ 345 (1094)
..+++..+.-|..++...-++.++..+-..+.-.-....|-..+..+ ++.-++.+.++.+++.|+..|-+++..
T Consensus 11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~-----lI~~lL~~p~~~vr~~AL~aL~Nls~~- 84 (254)
T PF04826_consen 11 AQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGIS-----LIGSLLNDPNPSVREKALNALNNLSVN- 84 (254)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHH-----HHHHHcCCCChHHHHHHHHHHHhcCCC-
Confidence 46777777777766554445666666555432221112233333333 333466678999999999999999544
Q ss_pred cchhhhhccCCCcHHHHHHHHhcC------hHHHHHHHHhcCCChHHHHHhh-hhHHHHHHHHhccccccccccCchhhH
Q 001349 346 KSVIHTLTRVESDVERIVALFKKG------LLEAVVLIDLLRPSTRTLIEMD-MMESLMTVIKKKEEDFLKMCLKPKSVS 418 (1094)
Q Consensus 346 ~~~~~~i~~~~~~~~~L~~lLk~g------~~~Aa~~l~~L~~~~~~~~~~~-~~~~Ll~~l~~~~~~~~~~~~~~~~aa 418 (1094)
..+...|.. .++.+.....++ -..+-.+|.+|...+..-..+. .+|.++++|.+|++.. +.-+
T Consensus 85 ~en~~~Ik~---~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~-------k~~v 154 (254)
T PF04826_consen 85 DENQEQIKM---YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKT-------KVQV 154 (254)
T ss_pred hhhHHHHHH---HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHH-------HHHH
Confidence 334444432 345555544443 2345568899977664333333 4599999999996532 3345
Q ss_pred HHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcch--hhHhhhcCchhHHHHH
Q 001349 419 VLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCR--NSIADKAELAPVMESF 496 (1094)
Q Consensus 419 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r--~~~~~~~~~~~~~~l~ 496 (1094)
+.+|-.| +-|+.....+.+..+++.++..+.....++-..-+-.+..++...-.=+ -++-+.....+|.-++
T Consensus 155 Lk~L~nL------S~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~ 228 (254)
T PF04826_consen 155 LKVLVNL------SENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLF 228 (254)
T ss_pred HHHHHHh------ccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHH
Confidence 5555554 7788888999999999999999987655553332223333332221111 1233455666777555
Q ss_pred H
Q 001349 497 M 497 (1094)
Q Consensus 497 ~ 497 (1094)
+
T Consensus 229 ~ 229 (254)
T PF04826_consen 229 G 229 (254)
T ss_pred c
Confidence 5
No 458
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.76 E-value=0.51 Score=50.59 Aligned_cols=211 Identities=14% Similarity=0.186 Sum_probs=106.5
Q ss_pred EEeCC--EEEEEE-----CCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEE-ECCCCceEE
Q 001349 820 ACFRD--KIFSGH-----SDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVW-SIGNEEIHC 891 (1094)
Q Consensus 820 ~fspd--~LaSgs-----~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vW-di~~~~~~~ 891 (1094)
.||+| +|+..- ..|.|-|||...+ +..+.++..|.-.-..+.|.+||+.++.+.. -|..- |...-++
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~-fqrvgE~~t~GiGpHev~lm~DGrtlvvanG--GIethpdfgR~~l-- 194 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREG-FQRVGEFSTHGIGPHEVTLMADGRTLVVANG--GIETHPDFGRTEL-- 194 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccc-cceecccccCCcCcceeEEecCCcEEEEeCC--ceecccccCcccc--
Confidence 47887 555443 2388999999854 5677888888888899999999999987653 34443 2211100
Q ss_pred EEecccCccceeeeecCceEEEe-eCCCeEEEEEeCCeEEEEcCCCCceEEEEe-CCEEEEEEcC------CeEEEEECC
Q 001349 892 VQVHDIKDQIQNLAVSNSILCFI-PQGAGIKVHLRNGKTKLLNSSKYPKCLALV-QGKVYCGCQD------GAIQEIDLA 963 (1094)
Q Consensus 892 ~~~~~~~~~V~~v~~~~~~~~fs-pdg~~l~~~~~~g~i~l~~~~~~v~~l~~s-~~~l~sgs~D------g~I~iwDl~ 963 (1094)
.+.++. |+..... .+|+.+-- .++---...-.++.+... +|.+..|+.- .---+=-..
T Consensus 195 --------NldsMe--PSlvlld~atG~liek----h~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~ 260 (366)
T COG3490 195 --------NLDSME--PSLVLLDAATGNLIEK----HTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFR 260 (366)
T ss_pred --------chhhcC--ccEEEEeccccchhhh----ccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeecc
Confidence 000000 0001111 12211100 000000001112222222 1222222210 000000001
Q ss_pred CCceeEEeccc-eeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCCEEEEEEcC
Q 001349 964 TGTFATIQTGH-RKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSELVYLGCKG 1042 (1094)
Q Consensus 964 ~~~~~~~~~~~-~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd~l~sgs~d 1042 (1094)
.++.+..+... .........|-+++.+.+..+++..++.|+...+||..+|..+..-.- .....++.....+++.+.+
T Consensus 261 ~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l-~daaGva~~~~gf~vssg~ 339 (366)
T COG3490 261 KGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAAL-PDAAGVAAAKGGFAVSSGQ 339 (366)
T ss_pred CCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccc-cccccceeccCceEEecCC
Confidence 12211111100 111122345778888877777788888888999999999987654331 1233455555678888888
Q ss_pred CeEEEEEC
Q 001349 1043 GTVEIWDQ 1050 (1094)
Q Consensus 1043 g~I~vwd~ 1050 (1094)
|.+..+..
T Consensus 340 G~~~~~s~ 347 (366)
T COG3490 340 GRIIFYSR 347 (366)
T ss_pred ceEEeccc
Confidence 98887743
No 459
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.70 E-value=0.016 Score=65.29 Aligned_cols=49 Identities=18% Similarity=0.435 Sum_probs=37.7
Q ss_pred CceeccCcccccc-----------------CcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCC
Q 001349 162 KDFVCPITTHIFD-----------------DPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSS 210 (1094)
Q Consensus 162 ~~~~CpIc~~~~~-----------------dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~ 210 (1094)
..--|+||+.... +-+.+||-|.|-+.|+++|.+.-+-.||+||.+++.
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 3567999986431 133469999999999999999545579999998864
No 460
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.68 E-value=0.13 Score=60.45 Aligned_cols=91 Identities=13% Similarity=0.233 Sum_probs=76.6
Q ss_pred CCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEE-EEEEeCC--EEEEEEcCCeEEEEECCCCcEEE
Q 001349 982 NPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVR-AMVVSSE--LVYLGCKGGTVEIWDQKRQIRIE 1057 (1094)
Q Consensus 982 ~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~-~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~ 1057 (1094)
..+.-+.|+|.-.++|.+..+| .|-+..+. .+.+.+++ ++.+++ +++|.|| .+++|-.||+|++.|+.++..+.
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~g-elli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKG-ELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcCccchhheeccCC-cEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4577889999999999998887 89898887 88888888 777777 9999999 89999999999999999999888
Q ss_pred EecccCCcceEEEEEcC
Q 001349 1058 TLQTGTSGKVQCMALDD 1074 (1094)
Q Consensus 1058 ~l~~~h~~~I~~l~~Sp 1074 (1094)
.+.......|+++-|++
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 74334556788888863
No 461
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.66 E-value=3.4 Score=50.91 Aligned_cols=198 Identities=13% Similarity=0.130 Sum_probs=106.9
Q ss_pred ccCCCeEEEEEecCCCEEEEEe------CCCcEEEEECCCC-ceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEe
Q 001349 853 EHTKAVTGLAILQSGEMLYSGS------LDKTARVWSIGNE-EIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLR 925 (1094)
Q Consensus 853 ~H~~~V~sv~fspdg~~LaSgs------~DgtI~vWdi~~~-~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~ 925 (1094)
+....+.+.+++|||+.++..- .|+.-.+|-...+ ....+. . ......- .|+|||..+.+...
T Consensus 347 g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt-~--g~~~t~P-------sWspDG~~lw~v~d 416 (591)
T PRK13616 347 GQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVL-E--GHSLTRP-------SWSLDADAVWVVVD 416 (591)
T ss_pred ccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeee-c--CCCCCCc-------eECCCCCceEEEec
Confidence 3334678999999999887665 2444444543222 222221 1 1112222 38999887665542
Q ss_pred CCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCE
Q 001349 926 NGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAA 1005 (1094)
Q Consensus 926 ~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~ 1005 (1094)
...+. .+......+.+.+.++..+... . .....|..+.|++|+..++... +| .
T Consensus 417 g~~~~----------------~v~~~~~~gql~~~~vd~ge~~------~---~~~g~Issl~wSpDG~RiA~i~-~g-~ 469 (591)
T PRK13616 417 GNTVV----------------RVIRDPATGQLARTPVDASAVA------S---RVPGPISELQLSRDGVRAAMII-GG-K 469 (591)
T ss_pred CcceE----------------EEeccCCCceEEEEeccCchhh------h---ccCCCcCeEEECCCCCEEEEEE-CC-E
Confidence 21110 1222223456666677665542 1 2345799999999999887765 34 6
Q ss_pred EEE---EECCCCeE-E---EEec-C-CCCEEEEEEeCC-EEEEEEcCCeEEEEECCC-CcEEEEecc-cCCcceEEEEEc
Q 001349 1006 VKM---WSTSNYNM-V---GSLP-T-LSEVRAMVVSSE-LVYLGCKGGTVEIWDQKR-QIRIETLQT-GTSGKVQCMALD 1073 (1094)
Q Consensus 1006 I~i---wd~~~~~~-~---~~~~-~-~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t-~~~~~~l~~-~h~~~I~~l~~S 1073 (1094)
|.+ -....|.. + ..+. . ...+..+.|.++ .|+++..++...+|.+.- |.....+.. .....+..++=+
T Consensus 470 v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~ 549 (591)
T PRK13616 470 VYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAAS 549 (591)
T ss_pred EEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecC
Confidence 766 44344531 1 1122 1 233688999888 566666655555565432 222122111 124567777777
Q ss_pred CCCCEEEEEeCCCcEE
Q 001349 1074 DNEEFLVIGTSDGRIQ 1089 (1094)
Q Consensus 1074 pdg~~L~sgs~DG~I~ 1089 (1094)
++ .++..+.+|.+.
T Consensus 550 ~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 550 PS--TVYVTDARAVLQ 563 (591)
T ss_pred Cc--eEEEEcCCceEE
Confidence 63 466666676443
No 462
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.65 E-value=0.021 Score=58.81 Aligned_cols=39 Identities=28% Similarity=0.417 Sum_probs=33.0
Q ss_pred CCCCCCceeccCccccccCcEEcCCcccccHHhHHHHHH
Q 001349 157 KHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIE 195 (1094)
Q Consensus 157 ~~~~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~ 195 (1094)
...+-+.-.|.+|++.+.|||+++-||-|||.||.+++-
T Consensus 37 rDsiK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 37 RDSIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred ccccCCcceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence 334444667899999999999999999999999999764
No 463
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.55 E-value=12 Score=47.69 Aligned_cols=213 Identities=9% Similarity=0.059 Sum_probs=112.2
Q ss_pred CCEEEEEECCCeEEEEecCCCcceeEEEecccCCC--------eEEEEEec----------------CCCEEEEEeCCCc
Q 001349 823 RDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKA--------VTGLAILQ----------------SGEMLYSGSLDKT 878 (1094)
Q Consensus 823 pd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~--------V~sv~fsp----------------dg~~LaSgs~Dgt 878 (1094)
.+.++.++.++.|.-.|..+| +.+..+..+... ...+++.. ++..++.++.|+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TG--k~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~ 271 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATG--KEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDAR 271 (764)
T ss_pred CCEEEEECCCCeEEEEECCCC--cEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCe
Confidence 467888888888888898888 566665432211 11222221 3447888888999
Q ss_pred EEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEc-----
Q 001349 879 ARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQ----- 953 (1094)
Q Consensus 879 I~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~----- 953 (1094)
+.-.|.++|+... .+.....+. +. .. +.-.+.+.+ . .-..-.+.++.+++|+.
T Consensus 272 LiALDA~TGk~~W--~fg~~G~vd-l~--~~-~g~~~~g~~-------------~---~ts~P~V~~g~VIvG~~v~d~~ 329 (764)
T TIGR03074 272 LIALDADTGKLCE--DFGNNGTVD-LT--AG-MGTTPPGYY-------------Y---PTSPPLVAGTTVVIGGRVADNY 329 (764)
T ss_pred EEEEECCCCCEEE--EecCCCcee-ee--cc-cCcCCCccc-------------c---cccCCEEECCEEEEEecccccc
Confidence 9888988885221 111111110 00 00 000000000 0 00001122455666643
Q ss_pred -----CCeEEEEECCCCceeEEeccce-----------eecCCCCCe-EEEEEeCCccE--EEEEE--------------
Q 001349 954 -----DGAIQEIDLATGTFATIQTGHR-----------KLLGKANPV-HALQVHNGLVY--TASTS-------------- 1000 (1094)
Q Consensus 954 -----Dg~I~iwDl~~~~~~~~~~~~~-----------~~~~h~~~V-~sl~fs~~~~~--las~s-------------- 1000 (1094)
+|.|+-+|.++|+....+.... .+..-...+ ..+++++.... +-++.
T Consensus 330 ~~~~~~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~ 409 (764)
T TIGR03074 330 STDEPSGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPAD 409 (764)
T ss_pred cccCCCcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCc
Confidence 6889999999999886543210 000000111 22333332221 11110
Q ss_pred -CCCCEEEEEECCCCeEEEEecC-CC---------CEE--EEEE-eCC---EEEEEEcCCeEEEEECCCCcEEEEe
Q 001349 1001 -LDGAAVKMWSTSNYNMVGSLPT-LS---------EVR--AMVV-SSE---LVYLGCKGGTVEIWDQKRQIRIETL 1059 (1094)
Q Consensus 1001 -~Dg~~I~iwd~~~~~~~~~~~~-~~---------~v~--~l~~-spd---~l~sgs~dg~I~vwd~~t~~~~~~l 1059 (1094)
.-...|.-.|.++|+....+.. +. ... .+.. ... .++.++.+|.++++|..+|+.+...
T Consensus 410 n~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 410 EKYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred ccccceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 0013778889999998887762 11 111 2222 221 6888999999999999999988764
No 464
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=94.48 E-value=12 Score=43.07 Aligned_cols=91 Identities=5% Similarity=-0.054 Sum_probs=40.3
Q ss_pred ccccccCcEEEEeeC-CCCeEEEeC--Cc-ceeecccCC-CcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEe
Q 001349 779 SPLAFEMVKVLSNGH-DSSADFWNH--RE-LVHVDSSEN-GKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQI 851 (1094)
Q Consensus 779 ~~~~~d~~~l~s~s~-dg~I~vWd~--~~-~~~~~~~h~-~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l 851 (1094)
.++..||++++.++. ||.-.+|-+ .+ .+..+..+. ........+++ .++-...+..++--|+.+.+...+..+
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~ 120 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV 120 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence 445668876655544 666666644 32 222222222 22223445554 444444556788889999854445444
Q ss_pred cccCCCeEEEEEe--cCCCEEE
Q 001349 852 REHTKAVTGLAIL--QSGEMLY 871 (1094)
Q Consensus 852 ~~H~~~V~sv~fs--pdg~~La 871 (1094)
....+-...|. .|+..++
T Consensus 121 --p~~~~g~gt~v~n~d~t~~~ 140 (386)
T PF14583_consen 121 --PDDWKGYGTWVANSDCTKLV 140 (386)
T ss_dssp ---TTEEEEEEEEE-TTSSEEE
T ss_pred --CcccccccceeeCCCccEEE
Confidence 45555445554 3555544
No 465
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.44 E-value=2.8 Score=51.59 Aligned_cols=191 Identities=18% Similarity=0.184 Sum_probs=96.3
Q ss_pred CCcEEEEEEeCC--EEEEEE------CCC--eEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCC-CcEEE
Q 001349 813 NGKVLSIACFRD--KIFSGH------SDG--TIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD-KTARV 881 (1094)
Q Consensus 813 ~~~V~~l~fspd--~LaSgs------~Dg--~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~D-gtI~v 881 (1094)
...+...+.+|+ .++..- .|+ .|.+++..+. ......+. ..+.-.|+|||..|++.+.. ..+++
T Consensus 349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~---~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV---AVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRV 423 (591)
T ss_pred ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc---ceeeecCC--CCCCceECCCCCceEEEecCcceEEE
Confidence 346788888986 333322 243 4555565332 22222232 37788999999988877643 22222
Q ss_pred E-----------ECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEE
Q 001349 882 W-----------SIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYC 950 (1094)
Q Consensus 882 W-----------di~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~s 950 (1094)
. +++.++... .....|..+. |+|||..++... +|.+.+- .+.
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~----~~~g~Issl~-------wSpDG~RiA~i~-~g~v~Va---------------~Vv 476 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVAS----RVPGPISELQ-------LSRDGVRAAMII-GGKVYLA---------------VVE 476 (591)
T ss_pred eccCCCceEEEEeccCchhhh----ccCCCcCeEE-------ECCCCCEEEEEE-CCEEEEE---------------EEE
Confidence 2 333332111 2244566666 999999877644 2222110 011
Q ss_pred EEcCCeEEEEECCCCceeEEeccceee-cCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecC---CCCE
Q 001349 951 GCQDGAIQEIDLATGTFATIQTGHRKL-LGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT---LSEV 1026 (1094)
Q Consensus 951 gs~Dg~I~iwDl~~~~~~~~~~~~~~~-~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~---~~~v 1026 (1094)
-..+|..++=+ . ..+ .+-...+.++.|.+++.+++.....+..+...++. |.....+.. ...+
T Consensus 477 r~~~G~~~l~~---~---------~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vD-G~~~~~~~~~n~~~~v 543 (591)
T PRK13616 477 QTEDGQYALTN---P---------REVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLD-GSNSDALPSRNLSAPV 543 (591)
T ss_pred eCCCCceeecc---c---------EEeecccCCccccceEecCCEEEEEecCCCCceEEEecC-CccccccCCCCccCce
Confidence 12233322211 0 111 12223457889998887665543222234333443 222222232 4567
Q ss_pred EEEEEeCCEEEEEEcCCeEEEE
Q 001349 1027 RAMVVSSELVYLGCKGGTVEIW 1048 (1094)
Q Consensus 1027 ~~l~~spd~l~sgs~dg~I~vw 1048 (1094)
..++-+++.++....+|.+.+=
T Consensus 544 ~~vaa~~~~iyv~~~~g~~~l~ 565 (591)
T PRK13616 544 VAVAASPSTVYVTDARAVLQLP 565 (591)
T ss_pred EEEecCCceEEEEcCCceEEec
Confidence 7777777777777777755443
No 466
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.40 E-value=0.99 Score=50.41 Aligned_cols=188 Identities=10% Similarity=0.098 Sum_probs=126.3
Q ss_pred cccchHhHHHHHHHHHHHHHhccchHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCc
Q 001349 279 SEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESD 358 (1094)
Q Consensus 279 s~~l~~~e~a~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~ 358 (1094)
+..+++.++|+-.+..++...+..-.+...+.-.+++. .+.+.+..+.+.|..+|...+.+|+.+-+.+.
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~-----~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~----- 163 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLG-----YLENSDAELRELAARVIGTAVQNNPKSQEQVI----- 163 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHH-----HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHH-----
Confidence 34466678888888888776654444444443333222 55578899999999999999888874444433
Q ss_pred HHHHHHHHhcChHHHHHHHHhcCCChHHHHHhhhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccch
Q 001349 359 VERIVALFKKGLLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIA 438 (1094)
Q Consensus 359 ~~~L~~lLk~g~~~Aa~~l~~L~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~ 438 (1094)
.-+.++.|+..|...+.. +.+..|++.+..|+-.+ .-.-
T Consensus 164 ------------------------------E~~~L~~Ll~~ls~~~~~------~~r~kaL~AissLIRn~-----~~g~ 202 (342)
T KOG2160|consen 164 ------------------------------ELGALSKLLKILSSDDPN------TVRTKALFAISSLIRNN-----KPGQ 202 (342)
T ss_pred ------------------------------HcccHHHHHHHHccCCCc------hHHHHHHHHHHHHHhcC-----cHHH
Confidence 223345555555533211 33556666666664333 2334
Q ss_pred hhhccchhHHHHHHhhhc--ccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHHHHh
Q 001349 439 NTIVSSKVFESVISSLEA--EWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVK 516 (1094)
Q Consensus 439 ~~~~~~~~~~~l~~~l~~--~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el~~ 516 (1094)
....+.+|..+|..+++. .++.-+.-++.++-..++.+.+-+..+...+-...++.+..+.....++.++..+.+++.
T Consensus 203 ~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 203 DEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 456778899999999998 566667778888888889988888877777777777777777788888888766666554
Q ss_pred c
Q 001349 517 L 517 (1094)
Q Consensus 517 ~ 517 (1094)
.
T Consensus 283 ~ 283 (342)
T KOG2160|consen 283 E 283 (342)
T ss_pred H
Confidence 3
No 467
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=94.35 E-value=0.0089 Score=73.42 Aligned_cols=49 Identities=22% Similarity=0.479 Sum_probs=40.6
Q ss_pred eeccCccccccCcEEcCCcccccHHhHHHHHHhCC-CCCCCCCcCCCCCCC
Q 001349 164 FVCPITTHIFDDPVTLETGQTYERRAIQEWIERGN-SSCPITRQKLSSTKL 213 (1094)
Q Consensus 164 ~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~-~~CP~c~~~~~~~~~ 213 (1094)
+.|+||.+ ..+|+++.|||.||+.|+...++... ..||.|+..+....+
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l 504 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKL 504 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHH
Confidence 89999999 88899999999999999999777533 359999977654433
No 468
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=94.33 E-value=0.038 Score=46.72 Aligned_cols=44 Identities=23% Similarity=0.597 Sum_probs=33.3
Q ss_pred eccCccccccC----cEEc-CCcccccHHhHHHHHHhCCCCCCCCCcCCC
Q 001349 165 VCPITTHIFDD----PVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLS 209 (1094)
Q Consensus 165 ~CpIc~~~~~d----Pv~~-~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~ 209 (1094)
.||-|+.-|.. ||.- -|.|.|=..||.+|++. ...||.+++...
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w~ 81 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTWV 81 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCceeE
Confidence 46666654421 4544 79999999999999998 557999998754
No 469
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=94.28 E-value=0.017 Score=63.34 Aligned_cols=48 Identities=19% Similarity=0.421 Sum_probs=40.5
Q ss_pred eccCccccccCcEEcCCcccccHHhHHHHHHhC-CCCCCCCCcCCCCCC
Q 001349 165 VCPITTHIFDDPVTLETGQTYERRAIQEWIERG-NSSCPITRQKLSSTK 212 (1094)
Q Consensus 165 ~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~-~~~CP~c~~~~~~~~ 212 (1094)
.|-||-+-=+|=-+-+|||-.|-.|+..|.... ..+||.||..+....
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE 419 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence 699999999987777999999999999998643 568999998776543
No 470
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.27 E-value=13 Score=42.61 Aligned_cols=73 Identities=22% Similarity=0.274 Sum_probs=44.8
Q ss_pred EEEecCCCCEEEEEEeCC---------EEEEEEcCCeEEEEECCCCcEE---EEecccCCcceEEEEEcCCCCEEEEEeC
Q 001349 1017 VGSLPTLSEVRAMVVSSE---------LVYLGCKGGTVEIWDQKRQIRI---ETLQTGTSGKVQCMALDDNEEFLVIGTS 1084 (1094)
Q Consensus 1017 ~~~~~~~~~v~~l~~spd---------~l~sgs~dg~I~vwd~~t~~~~---~~l~~~h~~~I~~l~~Spdg~~L~sgs~ 1084 (1094)
...+.++..+..+.|-.. ++++.-..+.|....+..+..+ ..+......++.++++.|||.+.++.+.
T Consensus 246 ~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~ 325 (331)
T PF07995_consen 246 VFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDS 325 (331)
T ss_dssp SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-T
T ss_pred ceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECC
Confidence 344455667777777532 3444444567888777654322 2222344558999999999999998888
Q ss_pred CCcEE
Q 001349 1085 DGRIQ 1089 (1094)
Q Consensus 1085 DG~I~ 1089 (1094)
+|.|.
T Consensus 326 ~G~iy 330 (331)
T PF07995_consen 326 DGKIY 330 (331)
T ss_dssp TTTEE
T ss_pred CCeEe
Confidence 99874
No 471
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=94.26 E-value=0.027 Score=43.62 Aligned_cols=43 Identities=23% Similarity=0.435 Sum_probs=21.7
Q ss_pred ccCccccccC--cEEc--CCcccccHHhHHHHHHhCCCCCCCCCcCC
Q 001349 166 CPITTHIFDD--PVTL--ETGQTYERRAIQEWIERGNSSCPITRQKL 208 (1094)
Q Consensus 166 CpIc~~~~~d--Pv~~--~cGhtfc~~ci~~~~~~~~~~CP~c~~~~ 208 (1094)
||+|.+.|.. --.. +||+-.|+.|..+..+.....||-||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 7888887722 1122 69999999999888876567899999865
No 472
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.22 E-value=11 Score=44.80 Aligned_cols=133 Identities=11% Similarity=0.108 Sum_probs=80.4
Q ss_pred cCCCcEEEEEEeC----C--EEEEEECCCeEEEEecC-----CCcceeEEEecccCC--C--eEEEEEecCCCEEEEEeC
Q 001349 811 SENGKVLSIACFR----D--KIFSGHSDGTIKVWTGR-----GSILHLIQQIREHTK--A--VTGLAILQSGEMLYSGSL 875 (1094)
Q Consensus 811 ~h~~~V~~l~fsp----d--~LaSgs~Dg~I~vWd~~-----t~~~~~~~~l~~H~~--~--V~sv~fspdg~~LaSgs~ 875 (1094)
|.-..|..+.|.| + .+.+......|.||-+. ++++..-++- +... + -..+.|+|....|+.-..
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtc-Ei~e~~pvLpQGCVWHPk~~iL~VLT~ 132 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTC-EIREPFPVLPQGCVWHPKKAILTVLTA 132 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeee-eccCCcccCCCcccccCCCceEEEEec
Confidence 4556799999998 2 55556667889999875 2221111111 1111 1 135679998888877666
Q ss_pred CCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCC-eEEEEc----------------CCCCc
Q 001349 876 DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNG-KTKLLN----------------SSKYP 938 (1094)
Q Consensus 876 DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g-~i~l~~----------------~~~~v 938 (1094)
+..-.+.++.....+........+.|.+.. |..||+.++++..+. +..+|| ..++|
T Consensus 133 ~dvSV~~sV~~d~srVkaDi~~~G~IhCAC-------WT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~I 205 (671)
T PF15390_consen 133 RDVSVLPSVHCDSSRVKADIKTSGLIHCAC-------WTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYI 205 (671)
T ss_pred CceeEeeeeeeCCceEEEeccCCceEEEEE-------ecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCce
Confidence 554456666655444444445566677665 999999888776552 345665 34567
Q ss_pred eEEEEeC-CEEEEE
Q 001349 939 KCLALVQ-GKVYCG 951 (1094)
Q Consensus 939 ~~l~~s~-~~l~sg 951 (1094)
+++.... ..++++
T Consensus 206 csi~AT~dsqVAva 219 (671)
T PF15390_consen 206 CSIEATVDSQVAVA 219 (671)
T ss_pred EEEEEeccceEEEE
Confidence 7766543 334443
No 473
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.12 E-value=0.032 Score=59.50 Aligned_cols=49 Identities=18% Similarity=0.358 Sum_probs=38.4
Q ss_pred eccCccc-cccCcEE----cCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCC
Q 001349 165 VCPITTH-IFDDPVT----LETGQTYERRAIQEWIERGNSSCPITRQKLSSTKL 213 (1094)
Q Consensus 165 ~CpIc~~-~~~dPv~----~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~ 213 (1094)
.||+|.. .+..|-+ -+|||+.|..|.-..+..|...||.|+..+....+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nf 55 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNF 55 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhccc
Confidence 3888863 3444532 28999999999999999988899999998876554
No 474
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.02 E-value=0.29 Score=55.64 Aligned_cols=178 Identities=19% Similarity=0.257 Sum_probs=114.2
Q ss_pred CchHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcC---hHHHHH-HHHhcCCChHHHHHhhhh---HHHHH
Q 001349 326 VDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG---LLEAVV-LIDLLRPSTRTLIEMDMM---ESLMT 398 (1094)
Q Consensus 326 ~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g---~~~Aa~-~l~~L~~~~~~~~~~~~~---~~Ll~ 398 (1094)
+.+++.++|+++|+||...-+ +-.+.. ...-+.-||..|.+. ..-+.. .|..|+-.++|+..|+.. .-|+.
T Consensus 275 KQeqLLrva~ylLlNlAed~~-~ElKMr-rkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~k 352 (791)
T KOG1222|consen 275 KQEQLLRVAVYLLLNLAEDIS-VELKMR-RKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLK 352 (791)
T ss_pred HHHHHHHHHHHHHHHHhhhhh-HHHHHH-HHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHH
Confidence 357889999999999954311 111111 112235666777554 222222 566677788888887765 67777
Q ss_pred HHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCc
Q 001349 399 VIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGK 478 (1094)
Q Consensus 399 ~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~ 478 (1094)
++.....+. ..+.++++ |.++.....+..+|..|-+|.|+..+.+.+-.+ .|+.+|- -|..|+.
T Consensus 353 lfp~~h~dL-------~~~tl~Ll------fNlSFD~glr~KMv~~GllP~l~~ll~~d~~~~--iA~~~lY-h~S~dD~ 416 (791)
T KOG1222|consen 353 LFPIQHPDL-------RKATLMLL------FNLSFDSGLRPKMVNGGLLPHLASLLDSDTKHG--IALNMLY-HLSCDDD 416 (791)
T ss_pred hcCCCCHHH-------HHHHHHHh------hhccccccccHHHhhccchHHHHHHhCCcccch--hhhhhhh-hhccCcH
Confidence 665543332 23344444 455777899999999999999999997655544 3333333 3466889
Q ss_pred chhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHHHHhccccc
Q 001349 479 CRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRT 521 (1094)
Q Consensus 479 ~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el~~~~r~~ 521 (1094)
.+.|.+....++-+...+-+++...-..++-.|.-=++++||.
T Consensus 417 ~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRN 459 (791)
T KOG1222|consen 417 AKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRN 459 (791)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcccc
Confidence 9999999999999998777776665544533333333666664
No 475
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.98 E-value=0.033 Score=61.44 Aligned_cols=47 Identities=21% Similarity=0.265 Sum_probs=38.4
Q ss_pred ceeccCccccccCcEEcCCccc-ccHHhHHHHHHhCCCCCCCCCcCCCC
Q 001349 163 DFVCPITTHIFDDPVTLETGQT-YERRAIQEWIERGNSSCPITRQKLSS 210 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~~~cGht-fc~~ci~~~~~~~~~~CP~c~~~~~~ 210 (1094)
--.|-||+.--+|-+++||-|. .|..|-.... ..+..||+||+++..
T Consensus 290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr-~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSLR-YQTNNCPICRQPIEE 337 (349)
T ss_pred CCeeEEEecCCcceEEecchhhehhHhHHHHHH-HhhcCCCccccchHh
Confidence 4679999999999999999995 5999977643 325579999998754
No 476
>PHA03098 kelch-like protein; Provisional
Probab=93.93 E-value=2.2 Score=52.34 Aligned_cols=65 Identities=11% Similarity=0.165 Sum_probs=35.3
Q ss_pred CCEEEEEECCC------eEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCC-----CcEEEEECCCCce
Q 001349 823 RDKIFSGHSDG------TIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD-----KTARVWSIGNEEI 889 (1094)
Q Consensus 823 pd~LaSgs~Dg------~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~D-----gtI~vWdi~~~~~ 889 (1094)
...++.|+.++ .+..||..++.+..+..+.........+. -++...+.||.+ .++..||..++++
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 33666666442 57788888875544333321222222222 267777778765 2466677766543
No 477
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.83 E-value=0.16 Score=63.13 Aligned_cols=98 Identities=21% Similarity=0.410 Sum_probs=72.2
Q ss_pred ccCcEEEEeeCCCCeEEEeCCc-ce--eecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCC
Q 001349 783 FEMVKVLSNGHDSSADFWNHRE-LV--HVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKA 857 (1094)
Q Consensus 783 ~d~~~l~s~s~dg~I~vWd~~~-~~--~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~ 857 (1094)
..+..++.|+..|.+-..|+.. .. .....-.++|++++|+.+ .++.|-.+|.|.+||+.++ +.++.+..|..+
T Consensus 97 ~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~--k~l~~i~e~~ap 174 (1206)
T KOG2079|consen 97 IVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA--KILKVITEHGAP 174 (1206)
T ss_pred eeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC--cceeeeeecCCc
Confidence 3455678888888888777763 22 222334689999999987 8899999999999999998 677777777776
Q ss_pred eEEEEEe---cCCCEEEEEeCCCcEEEEEC
Q 001349 858 VTGLAIL---QSGEMLYSGSLDKTARVWSI 884 (1094)
Q Consensus 858 V~sv~fs---pdg~~LaSgs~DgtI~vWdi 884 (1094)
++++-++ .++..++++..-|. +|..
T Consensus 175 ~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 175 VTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred cceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 6655443 45667888777775 6654
No 478
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.74 E-value=0.64 Score=53.85 Aligned_cols=145 Identities=14% Similarity=0.153 Sum_probs=94.8
Q ss_pred EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCC--EE-----EEEeCCCcEEEEECCCCceEEEEeccc
Q 001349 825 KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGE--ML-----YSGSLDKTARVWSIGNEEIHCVQVHDI 897 (1094)
Q Consensus 825 ~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~--~L-----aSgs~DgtI~vWdi~~~~~~~~~~~~~ 897 (1094)
++.++.....++--|+..| +.+.++.-|.+ |+-+.+.|+.+ .+ +.|=.|..|.-||.+-.....+...
T Consensus 348 il~~~~~~~~l~klDIE~G--KIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~-- 422 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERG--KIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV-- 422 (644)
T ss_pred EeeCCCCcCcceeeecccc--eeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee--
Confidence 6667777788888899999 77888876666 78888888643 22 3455577888898874321100000
Q ss_pred CccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEE-eCCEEEEEEcCCeEEEEECCCCceeEEecccee
Q 001349 898 KDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLAL-VQGKVYCGCQDGAIQEIDLATGTFATIQTGHRK 976 (1094)
Q Consensus 898 ~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~-s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~ 976 (1094)
+++ -|.....-.|.+. .+|.|++|+.+|.|++||- .+.... ..
T Consensus 423 ------------------q~k------------qy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AK-----TA 466 (644)
T KOG2395|consen 423 ------------------QSK------------QYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAK-----TA 466 (644)
T ss_pred ------------------ecc------------ccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhh-----hc
Confidence 000 0111222334443 3578999999999999996 443321 34
Q ss_pred ecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECC
Q 001349 977 LLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTS 1012 (1094)
Q Consensus 977 ~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~ 1012 (1094)
+.+-..+|..+..+.+|.++++.+. .++.+-++.
T Consensus 467 lPgLG~~I~hVdvtadGKwil~Tc~--tyLlLi~t~ 500 (644)
T KOG2395|consen 467 LPGLGDAIKHVDVTADGKWILATCK--TYLLLIDTL 500 (644)
T ss_pred ccccCCceeeEEeeccCcEEEEecc--cEEEEEEEe
Confidence 5677789999999999998877653 377777763
No 479
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.64 E-value=0.013 Score=70.51 Aligned_cols=87 Identities=16% Similarity=0.171 Sum_probs=53.2
Q ss_pred CCeEEEeCCc---------ceeecccCCCcEEEEEEeC---C--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEE
Q 001349 795 SSADFWNHRE---------LVHVDSSENGKVLSIACFR---D--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTG 860 (1094)
Q Consensus 795 g~I~vWd~~~---------~~~~~~~h~~~V~~l~fsp---d--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~s 860 (1094)
|...||+++. .++....-...+.-|.|.| + ++..+-.+|+|++-++.+. ....+.+|..+++.
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra---~~~l~rsHs~~~~d 229 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRA---LRSLFRSHSQRVTD 229 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechH---HHHHHHhcCCCccc
Confidence 4556787751 1122223344456666665 3 8888889999999877765 22455679888888
Q ss_pred EEE-----------ecCCCEEEEEeCCCcEEEEEC
Q 001349 861 LAI-----------LQSGEMLYSGSLDKTARVWSI 884 (1094)
Q Consensus 861 v~f-----------spdg~~LaSgs~DgtI~vWdi 884 (1094)
++| ||||..++.++.||.++.|.+
T Consensus 230 ~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 230 MAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred HHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 776 455555555555555555543
No 480
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=93.62 E-value=0.042 Score=43.54 Aligned_cols=47 Identities=11% Similarity=0.164 Sum_probs=37.7
Q ss_pred ceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCC
Q 001349 163 DFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTK 212 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~ 212 (1094)
+..|-.|...-...++++|||--|+.|..-+ ....||.|++++...+
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~---rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLICDNCFPGE---RYNGCPFCGTPFEFDD 53 (55)
T ss_pred ceeEEEccccccccccccccceeeccccChh---hccCCCCCCCcccCCC
Confidence 5678888888888999999999999997543 2335999999987654
No 481
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=93.60 E-value=11 Score=47.37 Aligned_cols=144 Identities=14% Similarity=0.077 Sum_probs=85.9
Q ss_pred CceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEE--ECCCC
Q 001349 937 YPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMW--STSNY 1014 (1094)
Q Consensus 937 ~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iw--d~~~~ 1014 (1094)
.+.++...+|+++ ++-+..|++|+..+++.+ +.-..|..++..+...-.+..++.+..-+ .+.+. +-..|
T Consensus 831 av~aL~~fngkll-A~In~~vrLye~t~~~eL------r~e~~~~~~~~aL~l~v~gdeI~VgDlm~-Sitll~y~~~eg 902 (1096)
T KOG1897|consen 831 AVYALVEFNGKLL-AGINQSVRLYEWTTEREL------RIECNISNPIIALDLQVKGDEIAVGDLMR-SITLLQYKGDEG 902 (1096)
T ss_pred ceeehhhhCCeEE-EecCcEEEEEEcccccee------hhhhcccCCeEEEEEEecCcEEEEeeccc-eEEEEEEeccCC
Confidence 3444444455554 446789999999988665 34455677888888877777777775443 44443 33333
Q ss_pred eEEEEe--cCCCCEEEEEEeCC-EEEEEEcCCeEEEEECCC-------------------CcEEEEecccCCcceEEE--
Q 001349 1015 NMVGSL--PTLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKR-------------------QIRIETLQTGTSGKVQCM-- 1070 (1094)
Q Consensus 1015 ~~~~~~--~~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t-------------------~~~~~~l~~~h~~~I~~l-- 1070 (1094)
...-.- -++.+.+++.+-.+ .++.+..+|.+.+-..++ |+.+..+ .|..-|..+
T Consensus 903 ~f~evArD~~p~Wmtaveil~~d~ylgae~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f--~hg~lv~~~~~ 980 (1096)
T KOG1897|consen 903 NFEEVARDYNPNWMTAVEILDDDTYLGAENSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKF--RHGSLVMQLGD 980 (1096)
T ss_pred ceEEeehhhCccceeeEEEecCceEEeecccccEEEEEecCCCCchhhhhcccceeeEEeccceeee--eecceEeeccc
Confidence 333222 26778888877655 555555667777664332 2233333 244445441
Q ss_pred EEcCCCCEEEEEeCCCcEEE
Q 001349 1071 ALDDNEEFLVIGTSDGRIQA 1090 (1094)
Q Consensus 1071 ~~Spdg~~L~sgs~DG~I~i 1090 (1094)
..+|-+..+..|+.+|.|-+
T Consensus 981 s~~~~~~~vlfgTv~GsIG~ 1000 (1096)
T KOG1897|consen 981 SMIPLEPKVLFGTVNGSIGI 1000 (1096)
T ss_pred cccCCCCcEEEEEccceEEE
Confidence 33455566888889998865
No 482
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.59 E-value=3.2 Score=50.39 Aligned_cols=204 Identities=14% Similarity=0.136 Sum_probs=103.1
Q ss_pred CCCcEEEEEEeCCEEEE-EECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceE
Q 001349 812 ENGKVLSIACFRDKIFS-GHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIH 890 (1094)
Q Consensus 812 h~~~V~~l~fspd~LaS-gs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~ 890 (1094)
.-+++.++..+|..+.. .+.--.|+|++..+. .+..+.-..+.+-.+.|+.+ ..|+....||+++||++-.....
T Consensus 42 p~gGpIAV~r~p~~~~~~~~a~~~I~If~~sG~---lL~~~~w~~~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~ge~ie 117 (829)
T KOG2280|consen 42 PFGGPIAVTRSPSKLVPLYSARPYIRIFNISGQ---LLGRILWKHGELIGMGWSDD-EELICVQKDGTVHVYGLLGEFIE 117 (829)
T ss_pred ccCCceEEEecccccccccccceeEEEEecccc---chHHHHhcCCCeeeecccCC-ceEEEEeccceEEEeecchhhhc
Confidence 34445566666642221 134457899998765 44444434447888999865 55667889999999999775433
Q ss_pred EE--EecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC---------CC------CceEEEEe-CCEEEEEE
Q 001349 891 CV--QVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS---------SK------YPKCLALV-QGKVYCGC 952 (1094)
Q Consensus 891 ~~--~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~---------~~------~v~~l~~s-~~~l~sgs 952 (1094)
.. ........|....+.. +++++...+|.+.+.+. .. ...|.... +++-.++-
T Consensus 118 ~~svg~e~~~~~I~ec~~f~---------~GVavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~l 188 (829)
T KOG2280|consen 118 SNSVGFESQMSDIVECRFFH---------NGVAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTIL 188 (829)
T ss_pred ccccccccccCceeEEEEec---------CceEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeE
Confidence 21 1111222233333222 33444444444433321 11 11233322 21110000
Q ss_pred cCCe----EEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec--CCCCE
Q 001349 953 QDGA----IQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP--TLSEV 1026 (1094)
Q Consensus 953 ~Dg~----I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~--~~~~v 1026 (1094)
-|-- ..++....+.... ..+..-...+.-+.++++..+++-...+| .|.+-+....+....+. .+...
T Consensus 189 l~v~~~v~~~~~q~~~~~~q~-----~~~~~~~~~~~ki~VS~n~~~laLyt~~G-~i~~vs~D~~~~lce~~~~~~~~p 262 (829)
T KOG2280|consen 189 LDVDVAVGLHICQVEESRVQL-----HALSWPNSSVVKISVSPNRRFLALYTETG-KIWVVSIDLSQILCEFNCTDHDPP 262 (829)
T ss_pred Eeechhhhhcccceecccccc-----cccCCCCceEEEEEEcCCcceEEEEecCC-cEEEEecchhhhhhccCCCCCCch
Confidence 0000 0111111111100 11111124677888899999999988887 77777777666666665 33444
Q ss_pred EEEEEeCC
Q 001349 1027 RAMVVSSE 1034 (1094)
Q Consensus 1027 ~~l~~spd 1034 (1094)
..++|.++
T Consensus 263 ~qm~Wcgn 270 (829)
T KOG2280|consen 263 KQMAWCGN 270 (829)
T ss_pred HhceeecC
Confidence 46677655
No 483
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.50 E-value=0.04 Score=60.79 Aligned_cols=48 Identities=17% Similarity=0.270 Sum_probs=37.0
Q ss_pred CCCCCceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCC
Q 001349 158 HTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLS 209 (1094)
Q Consensus 158 ~~~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~ 209 (1094)
.+.|....|-||.+-..+.+-++|||..| |+.-... ...||+||+.+.
T Consensus 300 ~~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~--l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 300 RELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH--LPQCPVCRQRIR 347 (355)
T ss_pred cccCCCCceEEecCCccceeeecCCcEEE--chHHHhh--CCCCchhHHHHH
Confidence 34455778999999999999999999988 7554322 335999998754
No 484
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=93.47 E-value=13 Score=40.45 Aligned_cols=119 Identities=13% Similarity=0.214 Sum_probs=79.4
Q ss_pred CCCceEEEE-eCCEEEEEE-cCC--eEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEE
Q 001349 935 SKYPKCLAL-VQGKVYCGC-QDG--AIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWS 1010 (1094)
Q Consensus 935 ~~~v~~l~~-s~~~l~sgs-~Dg--~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd 1010 (1094)
......+.| .++.++-++ .-| .|+.+|+.+|+......-. ...---.++...+..+..+. .+ +...+||
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~-----~~~FgEGit~~~d~l~qLTW-k~-~~~f~yd 116 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLP-----PRYFGEGITILGDKLYQLTW-KE-GTGFVYD 116 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-T-----TT--EEEEEEETTEEEEEES-SS-SEEEEEE
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECC-----ccccceeEEEECCEEEEEEe-cC-CeEEEEc
Confidence 445566777 566665443 333 7999999999876432211 11223456666777776665 33 4999999
Q ss_pred CCCCeEEEEecCCCCEEEEEEeCCEEEEEEcCCeEEEEECCCCcEEEEec
Q 001349 1011 TSNYNMVGSLPTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQ 1060 (1094)
Q Consensus 1011 ~~~~~~~~~~~~~~~v~~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~ 1060 (1094)
..+.+.+.++...+.-+.++...+.++.......++++|..+.+....+.
T Consensus 117 ~~tl~~~~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~ 166 (264)
T PF05096_consen 117 PNTLKKIGTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQ 166 (264)
T ss_dssp TTTTEEEEEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE
T ss_pred cccceEEEEEecCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEE
Confidence 99999999999777888899888888888888899999999887766653
No 485
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.29 E-value=0.058 Score=60.23 Aligned_cols=45 Identities=24% Similarity=0.552 Sum_probs=38.6
Q ss_pred CceeccCccccccC---cEEcCCcccccHHhHHHHHHhCC--CCCCCCCc
Q 001349 162 KDFVCPITTHIFDD---PVTLETGQTYERRAIQEWIERGN--SSCPITRQ 206 (1094)
Q Consensus 162 ~~~~CpIc~~~~~d---Pv~~~cGhtfc~~ci~~~~~~~~--~~CP~c~~ 206 (1094)
.-|.|||-.+--.| |+.+.|||.-|+..|.+....|. ..||.|-.
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~ 382 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPV 382 (394)
T ss_pred ceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence 35899999988776 89999999999999999888776 56999954
No 486
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=93.16 E-value=1.5 Score=53.62 Aligned_cols=203 Identities=11% Similarity=0.107 Sum_probs=130.1
Q ss_pred hHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcC----------hHHHHHHHHhcCCChHHHHHhhhhHHHH
Q 001349 328 PRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----------LLEAVVLIDLLRPSTRTLIEMDMMESLM 397 (1094)
Q Consensus 328 ~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g----------~~~Aa~~l~~L~~~~~~~~~~~~~~~Ll 397 (1094)
..|..++..+|+|+++...+.++++..-+|-|+.|+..++.- +..+.++|.+|++.-+.-+.....+.+-
T Consensus 388 ~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~ 467 (717)
T KOG1048|consen 388 STVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLA 467 (717)
T ss_pred ceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhh
Confidence 577899999999999988889999999999999999888632 7788889999977554211111110000
Q ss_pred HH------------H-Hhc--ccc------c------------cccccCc------------------hhhHHHHHHHHh
Q 001349 398 TV------------I-KKK--EED------F------------LKMCLKP------------------KSVSVLLLGQMI 426 (1094)
Q Consensus 398 ~~------------l-~~~--~~~------~------------~~~~~~~------------------~~aa~~~l~~l~ 426 (1094)
+. . +.+ +++ . .-++-.| -.|+.-+|.+|
T Consensus 468 ~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNl- 546 (717)
T KOG1048|consen 468 NIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNL- 546 (717)
T ss_pred cccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhh-
Confidence 00 0 000 000 0 0000001 15666666555
Q ss_pred cCCcccccccchhhh-ccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhcCCch--
Q 001349 427 GDSEESIVSSIANTI-VSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGE-- 503 (1094)
Q Consensus 427 ~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~-- 503 (1094)
+++.---....+..+ ..+.|++.|+++|++++.+....+++ +|++|..|-.-+..|+ ..+++-|++.|.....+.
T Consensus 547 tA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~-~LrNls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~ 624 (717)
T KOG1048|consen 547 TAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAG-ALRNLSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSL 624 (717)
T ss_pred hccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHH-HHhhhccCchhhhhhh-cchHHHHHHhCcCCCCCcCc
Confidence 444333333444455 89999999999999999998876555 5678899999999999 889999999998865511
Q ss_pred ---hH-HHHHHHHHHHhccccchhHHHHHHhhhcCcchh
Q 001349 504 ---RF-EIVCFLSELVKLNRRTFNEQILHIIKDEGTYSS 538 (1094)
Q Consensus 504 ---~~-~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~ 538 (1094)
-. .+...|.|++.- ..+.-+.+-+-++++.
T Consensus 625 sedtv~~vc~tl~niv~~-----~~~nAkdl~~~~g~~k 658 (717)
T KOG1048|consen 625 SEDTVRAVCHTLNNIVRK-----NVLNAKDLLEIKGIPK 658 (717)
T ss_pred hHHHHHHHHHhHHHHHHH-----hHHHHHHHHhccChHH
Confidence 11 225556666543 2333344555556665
No 487
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=93.02 E-value=0.21 Score=52.02 Aligned_cols=136 Identities=13% Similarity=0.143 Sum_probs=81.2
Q ss_pred EEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCC-eEEEEec-CCCC
Q 001349 948 VYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNY-NMVGSLP-TLSE 1025 (1094)
Q Consensus 948 l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~-~~~~~~~-~~~~ 1025 (1094)
+..-+.||.|.-++++..+.... ...-|... ........-+++|+.+| .|.+|+..-. .....+. ....
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~r-----se~~~~e~---~~v~~~~~~~~vG~~dg-~v~~~n~n~~g~~~d~~~s~~e~ 103 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCR-----SERFIDEG---QRVVTASAKLMVGTSDG-AVYVFNWNLEGAHSDRVCSGEES 103 (238)
T ss_pred hccccCCcccccchhhhhhhhhh-----hhhhhhcc---eeecccCceEEeecccc-eEEEecCCccchHHHhhhccccc
Confidence 44556788888887765433210 00111111 11122334456666776 9999987621 1111111 2233
Q ss_pred EEEEEEeC-C--EEEEEEcCCeEEEEECCCCcEEEEecccCC-cceEEEEEcCCCCEEEEE--eCCCcEEEEeC
Q 001349 1026 VRAMVVSS-E--LVYLGCKGGTVEIWDQKRQIRIETLQTGTS-GKVQCMALDDNEEFLVIG--TSDGRIQAWGL 1093 (1094)
Q Consensus 1026 v~~l~~sp-d--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~-~~I~~l~~Spdg~~L~sg--s~DG~I~iWdl 1093 (1094)
+.++.... + +.++++.||.|+-|++.-++.+... ..|. .++.....+..+++++.+ |.|..++.|++
T Consensus 104 i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~-g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~v 176 (238)
T KOG2444|consen 104 IDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYV-GQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNV 176 (238)
T ss_pred ceeccccccccceeEEeccCCceeeeccccCceeeee-ccccCCCcceeEEecCCceEEeeccccchhhhhcch
Confidence 33333332 3 7888999999999999988877766 4666 566666666667777777 77888888876
No 488
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.00 E-value=0.078 Score=59.68 Aligned_cols=64 Identities=20% Similarity=0.363 Sum_probs=51.1
Q ss_pred ceeccCccccccC------cEEcCCcccccHHhHHHHHHhCCCCCCCCCcCC--CC---CCCCChhHHHHHHHHHH
Q 001349 163 DFVCPITTHIFDD------PVTLETGQTYERRAIQEWIERGNSSCPITRQKL--SS---TKLPKTNYVLKRLIASW 227 (1094)
Q Consensus 163 ~~~CpIc~~~~~d------Pv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~--~~---~~~~~pN~~l~~~i~~~ 227 (1094)
.+.|-||.+-|.. |-++.|||++|..|+...+..+...||.||.+. .. ..+. .|+.+-.+++..
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~-kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQ-KNFALLQAIEHM 77 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhh-hhHHHHHHHHHH
Confidence 3568888887764 777889999999999998887777799999983 32 3355 899999998876
No 489
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=92.92 E-value=0.42 Score=58.16 Aligned_cols=156 Identities=15% Similarity=0.141 Sum_probs=113.8
Q ss_pred hchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccc----cchhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhc
Q 001349 309 LSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRD----KSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLL 380 (1094)
Q Consensus 309 ~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~----~~~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L 380 (1094)
+-.|.|+.--+..|-.|.+..++|++.-+|=++...+ ..++..+.+....+++|+.+|+.+ +-.|+.+|.+|
T Consensus 514 Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNl 593 (717)
T KOG1048|consen 514 LWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNL 593 (717)
T ss_pred eecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhh
Confidence 3455677766778888999999999999999998653 346677778888999999999998 55677799999
Q ss_pred CCChHHHHHhhh--hHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhccc
Q 001349 381 RPSTRTLIEMDM--MESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEW 458 (1094)
Q Consensus 381 ~~~~~~~~~~~~--~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 458 (1094)
+....|+.-|+. +|-||+.|..+.-.. .+.-.--.+..+.|..++ ..+..|++.+...+|++.|+-+.+.-.
T Consensus 594 s~d~rnk~ligk~a~~~lv~~Lp~~~~~~-~~sedtv~~vc~tl~niv-----~~~~~nAkdl~~~~g~~kL~~I~~s~~ 667 (717)
T KOG1048|consen 594 SRDIRNKELIGKYAIPDLVRCLPGSGPST-SLSEDTVRAVCHTLNNIV-----RKNVLNAKDLLEIKGIPKLRLISKSQH 667 (717)
T ss_pred ccCchhhhhhhcchHHHHHHhCcCCCCCc-CchHHHHHHHHHhHHHHH-----HHhHHHHHHHHhccChHHHHHHhcccC
Confidence 998888888884 499999999874310 000011244555566662 456799999999999999999988633
Q ss_pred HHHHHHHHHHHH
Q 001349 459 AEERIAAVGILL 470 (1094)
Q Consensus 459 ~~~~~~~~~~l~ 470 (1094)
-..-..||+.++
T Consensus 668 S~k~~kaAs~vL 679 (717)
T KOG1048|consen 668 SPKEFKAASSVL 679 (717)
T ss_pred CHHHHHHHHHHH
Confidence 323333444444
No 490
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.91 E-value=0.02 Score=60.61 Aligned_cols=42 Identities=29% Similarity=0.402 Sum_probs=34.5
Q ss_pred ceeccCccccccCcEEcCCcccc-cHHhHHHHHHhCCCCCCCCCcCCC
Q 001349 163 DFVCPITTHIFDDPVTLETGQTY-ERRAIQEWIERGNSSCPITRQKLS 209 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~~~cGhtf-c~~ci~~~~~~~~~~CP~c~~~~~ 209 (1094)
+.+|.||++.-.|=|.++|||.- |..|-.+ -..||+||+.+.
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkr-----m~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKR-----MNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccc-----cccCchHHHHHH
Confidence 78999999999999999999955 8888432 226999998653
No 491
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=92.89 E-value=0.13 Score=38.77 Aligned_cols=39 Identities=15% Similarity=0.032 Sum_probs=34.9
Q ss_pred cccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHH
Q 001349 434 VSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRC 472 (1094)
Q Consensus 434 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~ 472 (1094)
+++++..+++.|++|.|+.+++.++.+-+..|+..|..+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl 39 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNL 39 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 357888999999999999999999999999999988765
No 492
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.69 E-value=0.046 Score=63.70 Aligned_cols=58 Identities=31% Similarity=0.563 Sum_probs=41.1
Q ss_pred ceeccCcccccc----CcEEcCCcccccHHhHHHHHHhCCCCCCCCCcC-----CCCCCCCChhHHHHHHHH
Q 001349 163 DFVCPITTHIFD----DPVTLETGQTYERRAIQEWIERGNSSCPITRQK-----LSSTKLPKTNYVLKRLIA 225 (1094)
Q Consensus 163 ~~~CpIc~~~~~----dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~-----~~~~~~~~pN~~l~~~i~ 225 (1094)
-+.|+||...|. .||.+-||||.|+.|.+.-.+. +|| |... ...+..+ -|++|-+.+.
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~---scp-~~~De~~~~~~~~e~p-~n~alL~~~~ 77 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA---SCP-TKRDEDSSLMQLKEEP-RNYALLRREH 77 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc---cCC-CCccccchhcChhhcc-hhHHHHHhhc
Confidence 678999977664 5999999999999999986543 688 4321 2333454 5777765544
No 493
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=92.67 E-value=0.038 Score=46.31 Aligned_cols=47 Identities=26% Similarity=0.512 Sum_probs=34.9
Q ss_pred ceeccCccccccC-cEEc-CCcccccHHhHHHHHHhC--CCCCCCCCcCCC
Q 001349 163 DFVCPITTHIFDD-PVTL-ETGQTYERRAIQEWIERG--NSSCPITRQKLS 209 (1094)
Q Consensus 163 ~~~CpIc~~~~~d-Pv~~-~cGhtfc~~ci~~~~~~~--~~~CP~c~~~~~ 209 (1094)
+-.||-|.-.=.| |.++ -|-|.|=..||.+|+... +..||+||+...
T Consensus 31 dg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 31 DGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 4456666655555 5555 799999999999999853 345999998764
No 494
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.59 E-value=0.082 Score=58.25 Aligned_cols=52 Identities=19% Similarity=0.429 Sum_probs=37.9
Q ss_pred ceeccCccccccCcE---Ec-CCcccccHHhHHHHHHhCC--CCCCCCCcCCCCCCCC
Q 001349 163 DFVCPITTHIFDDPV---TL-ETGQTYERRAIQEWIERGN--SSCPITRQKLSSTKLP 214 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv---~~-~cGhtfc~~ci~~~~~~~~--~~CP~c~~~~~~~~~~ 214 (1094)
-..|.||-+.+-.-- .+ .|||+|--.|++.|++... +.||+|+-.+....++
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~~~ 61 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERHVA 61 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccceeee
Confidence 467999966653211 13 5999999999999998643 4799999666665554
No 495
>PHA03098 kelch-like protein; Provisional
Probab=92.52 E-value=5.9 Score=48.59 Aligned_cols=107 Identities=10% Similarity=0.029 Sum_probs=54.5
Q ss_pred cccCcEEEEeeCCC------CeEEEeCCcceee----cccCCCcEEEEEEeCCEEEEEECC-----CeEEEEecCCCcce
Q 001349 782 AFEMVKVLSNGHDS------SADFWNHRELVHV----DSSENGKVLSIACFRDKIFSGHSD-----GTIKVWTGRGSILH 846 (1094)
Q Consensus 782 ~~d~~~l~s~s~dg------~I~vWd~~~~~~~----~~~h~~~V~~l~fspd~LaSgs~D-----g~I~vWd~~t~~~~ 846 (1094)
..++..++.||.++ .+..||..+.... ..........+.+....++.|+.+ .++..||..++.+.
T Consensus 292 ~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 292 VLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred EECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 34556667777643 4556665421111 111122223333433466667655 35778998888665
Q ss_pred eEEEecccCCCeEEEEEecCCCEEEEEeCC------CcEEEEECCCCceE
Q 001349 847 LIQQIREHTKAVTGLAILQSGEMLYSGSLD------KTARVWSIGNEEIH 890 (1094)
Q Consensus 847 ~~~~l~~H~~~V~sv~fspdg~~LaSgs~D------gtI~vWdi~~~~~~ 890 (1094)
....+...... .+++. -+++..+.||.+ ..+..||..++++.
T Consensus 372 ~~~~lp~~r~~-~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~ 419 (534)
T PHA03098 372 EEPPLIFPRYN-PCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWS 419 (534)
T ss_pred eCCCcCcCCcc-ceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence 54433211111 12222 356777777632 35778888776543
No 496
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.36 E-value=15 Score=38.70 Aligned_cols=47 Identities=6% Similarity=0.086 Sum_probs=34.5
Q ss_pred EEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC
Q 001349 987 LQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE 1034 (1094)
Q Consensus 987 l~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd 1034 (1094)
++++.++.+.+++-. |++|.-.|..+|+.+..+. ....+++++|-..
T Consensus 217 m~ID~eG~L~Va~~n-g~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 217 MTIDTEGNLYVATFN-GGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred ceEccCCcEEEEEec-CcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 444545555444433 4599999999999999988 5678999999754
No 497
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=92.23 E-value=0.12 Score=54.38 Aligned_cols=43 Identities=23% Similarity=0.439 Sum_probs=36.0
Q ss_pred ceeccCccccccCcEE-cCCcccccHHhHHHHHHhC-CCCCCCCC
Q 001349 163 DFVCPITTHIFDDPVT-LETGQTYERRAIQEWIERG-NSSCPITR 205 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~-~~cGhtfc~~ci~~~~~~~-~~~CP~c~ 205 (1094)
++.|||....+..||+ ..|||.|.|..|...+... ...||+-+
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~g 220 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLG 220 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeeccccc
Confidence 6899999999999998 5999999999999988652 22499743
No 498
>PHA02790 Kelch-like protein; Provisional
Probab=92.21 E-value=6.7 Score=47.38 Aligned_cols=103 Identities=11% Similarity=0.009 Sum_probs=51.8
Q ss_pred cCcEEEEeeCCC-----CeEEEeCCcceee----cccCCCcEEEEEEeCCEEEEEECC--CeEEEEecCCCcceeEEEec
Q 001349 784 EMVKVLSNGHDS-----SADFWNHRELVHV----DSSENGKVLSIACFRDKIFSGHSD--GTIKVWTGRGSILHLIQQIR 852 (1094)
Q Consensus 784 d~~~l~s~s~dg-----~I~vWd~~~~~~~----~~~h~~~V~~l~fspd~LaSgs~D--g~I~vWd~~t~~~~~~~~l~ 852 (1094)
++..++.||.++ ++..||....... ..........+...+...+.|+.+ .++..||..++.+..+..+.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~ 350 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL 350 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence 345567777643 3455665522111 111111222333333466666654 46888998877555544443
Q ss_pred ccCCCeEEEEEecCCCEEEEEeCCC---cEEEEECCCCc
Q 001349 853 EHTKAVTGLAILQSGEMLYSGSLDK---TARVWSIGNEE 888 (1094)
Q Consensus 853 ~H~~~V~sv~fspdg~~LaSgs~Dg---tI~vWdi~~~~ 888 (1094)
...... +++ .-+|+..+.||.++ ++..||..+++
T Consensus 351 ~~r~~~-~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~~ 387 (480)
T PHA02790 351 KPRCNP-AVA-SINNVIYVIGGHSETDTTTEYLLPNHDQ 387 (480)
T ss_pred CCCccc-EEE-EECCEEEEecCcCCCCccEEEEeCCCCE
Confidence 211111 222 23677777777653 35667776654
No 499
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=92.04 E-value=0.37 Score=37.63 Aligned_cols=31 Identities=26% Similarity=0.634 Sum_probs=28.0
Q ss_pred CcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1064 SGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1064 ~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
...|..++|+|..++|+.|+.||.|.++.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4479999999999999999999999999864
No 500
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=91.81 E-value=0.99 Score=58.05 Aligned_cols=176 Identities=16% Similarity=0.100 Sum_probs=118.3
Q ss_pred hHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcChHH----HHHHHHhcCCC-hHHHH----HhhhhHHHHH
Q 001349 328 PRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKGLLE----AVVLIDLLRPS-TRTLI----EMDMMESLMT 398 (1094)
Q Consensus 328 ~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g~~~----Aa~~l~~L~~~-~~~~~----~~~~~~~Ll~ 398 (1094)
..+.+++...|.||...+.+|+..+...++...++|+-|++...+ -|.+|.+|+=. |.|++ .++-+-+|+.
T Consensus 365 ~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~ 444 (2195)
T KOG2122|consen 365 NALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAA 444 (2195)
T ss_pred HHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHH
Confidence 466899999999999999999999999999999999999998543 45588899543 23443 3444444444
Q ss_pred H-HHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhcc-chhHHHHHHhhh----cccHHHHHHHHHHH---
Q 001349 399 V-IKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVS-SKVFESVISSLE----AEWAEERIAAVGIL--- 469 (1094)
Q Consensus 399 ~-l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~----~~~~~~~~~~~~~l--- 469 (1094)
. ++..+|-.++. +|..|-.- .+...+|.+.|-. -|++.+||++|- ++++.-=++|.+||
T Consensus 445 ~al~~~kEsTLKa----------vLSALWNL--SAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNV 512 (2195)
T KOG2122|consen 445 CALRNKKESTLKA----------VLSALWNL--SAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNV 512 (2195)
T ss_pred HHHHhcccchHHH----------HHHHHhhh--hhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHH
Confidence 3 44444433332 23333211 2444566665543 577889998885 33455556666666
Q ss_pred HHHhhccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHHHH
Q 001349 470 LRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELV 515 (1094)
Q Consensus 470 ~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el~ 515 (1094)
...++.+..||..+.++..++-|++.|.+.+=-.=.++.-.|-+|.
T Consensus 513 SS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLS 558 (2195)
T KOG2122|consen 513 SSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLS 558 (2195)
T ss_pred HhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhh
Confidence 3567778899999999999999999888765444334455555553
Done!