Query 001349
Match_columns 1094
No_of_seqs 1140 out of 5132
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 23:34:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001349.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001349hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 1.8E-36 6.2E-41 356.1 37.9 276 772-1093 107-409 (410)
2 3ow8_A WD repeat-containing pr 100.0 3.9E-36 1.3E-40 341.2 38.1 277 772-1094 31-320 (321)
3 1got_B GT-beta; complex (GTP-b 100.0 5.6E-35 1.9E-39 334.2 40.0 276 772-1092 54-340 (340)
4 4gqb_B Methylosome protein 50; 100.0 2.5E-35 8.7E-40 337.8 35.7 277 775-1094 32-330 (344)
5 1nr0_A Actin interacting prote 100.0 7.8E-35 2.7E-39 360.4 40.2 306 772-1094 146-610 (611)
6 1nr0_A Actin interacting prote 100.0 1.9E-34 6.5E-39 356.9 41.0 310 775-1094 105-566 (611)
7 4g56_B MGC81050 protein; prote 100.0 5.6E-35 1.9E-39 336.8 32.2 282 771-1094 40-342 (357)
8 3frx_A Guanine nucleotide-bind 100.0 9.3E-34 3.2E-38 321.1 40.8 272 806-1093 10-315 (319)
9 2ymu_A WD-40 repeat protein; u 100.0 1.4E-33 4.8E-38 345.5 44.3 293 777-1092 266-577 (577)
10 3fm0_A Protein CIAO1; WDR39,SG 100.0 5.3E-34 1.8E-38 326.8 37.9 279 776-1094 19-334 (345)
11 2ynn_A Coatomer subunit beta'; 100.0 8.3E-34 2.8E-38 319.1 38.1 278 772-1093 12-300 (304)
12 2pbi_B Guanine nucleotide-bind 100.0 1.5E-33 5E-38 324.5 41.0 271 805-1092 56-354 (354)
13 4aow_A Guanine nucleotide-bind 100.0 2.5E-33 8.6E-38 318.0 42.0 275 805-1094 30-336 (340)
14 3iz6_a 40S ribosomal protein R 100.0 2.8E-34 9.6E-39 333.8 31.0 281 798-1094 49-374 (380)
15 2xzm_R RACK1; ribosome, transl 100.0 1.7E-33 5.9E-38 322.1 36.9 275 784-1093 38-338 (343)
16 2hes_X YDR267CP; beta-propelle 100.0 4.6E-33 1.6E-37 316.9 37.9 278 805-1094 6-327 (330)
17 1erj_A Transcriptional repress 100.0 9.1E-33 3.1E-37 322.5 40.5 279 773-1093 64-387 (393)
18 2ymu_A WD-40 repeat protein; u 100.0 1.7E-32 5.7E-37 336.0 44.5 296 776-1094 224-538 (577)
19 4ery_A WD repeat-containing pr 100.0 2.5E-32 8.5E-37 307.4 40.6 278 772-1094 22-311 (312)
20 2ynn_A Coatomer subunit beta'; 100.0 1.2E-32 4E-37 309.7 37.7 245 805-1094 5-258 (304)
21 2ovr_B FBW7, F-BOX/WD repeat p 100.0 7E-32 2.4E-36 320.0 45.1 293 779-1094 123-441 (445)
22 1r5m_A SIR4-interacting protei 100.0 6.2E-32 2.1E-36 315.7 40.4 298 776-1094 48-424 (425)
23 1vyh_C Platelet-activating fac 100.0 1.9E-32 6.6E-37 321.7 36.0 242 806-1093 101-367 (410)
24 3zwl_B Eukaryotic translation 100.0 2.1E-31 7.2E-36 304.9 41.7 269 807-1094 26-345 (369)
25 3ow8_A WD repeat-containing pr 100.0 7.3E-32 2.5E-36 305.9 36.7 244 807-1094 26-278 (321)
26 3dm0_A Maltose-binding peripla 100.0 1.3E-31 4.5E-36 336.6 40.1 273 807-1094 376-692 (694)
27 2pm9_A Protein WEB1, protein t 100.0 9.4E-33 3.2E-37 322.9 26.3 305 776-1094 15-413 (416)
28 1gxr_A ESG1, transducin-like e 100.0 6.4E-31 2.2E-35 297.2 37.7 300 776-1093 12-335 (337)
29 1got_B GT-beta; complex (GTP-b 100.0 1E-30 3.4E-35 298.9 39.4 243 805-1093 47-299 (340)
30 3v7d_B Cell division control p 100.0 1E-30 3.6E-35 311.2 39.9 289 779-1094 126-420 (464)
31 3vl1_A 26S proteasome regulato 100.0 2E-30 6.8E-35 304.0 38.9 299 778-1094 61-418 (420)
32 1sq9_A Antiviral protein SKI8; 100.0 1.6E-30 5.6E-35 302.1 37.2 274 806-1093 9-393 (397)
33 1k8k_C P40, ARP2/3 complex 41 100.0 1.1E-30 3.7E-35 300.3 34.8 278 774-1093 9-359 (372)
34 2pm7_B Protein transport prote 100.0 1.6E-30 5.6E-35 291.1 34.2 247 807-1093 3-283 (297)
35 1pgu_A Actin interacting prote 100.0 6.1E-30 2.1E-34 314.9 41.1 307 775-1094 118-613 (615)
36 4e54_B DNA damage-binding prot 100.0 4.9E-31 1.7E-35 312.1 29.1 275 808-1094 114-429 (435)
37 4gga_A P55CDC, cell division c 100.0 7.7E-30 2.6E-34 300.3 38.2 270 779-1093 111-393 (420)
38 4aez_A CDC20, WD repeat-contai 100.0 6.1E-30 2.1E-34 299.2 36.9 270 778-1094 96-379 (401)
39 2oaj_A Protein SNI1; WD40 repe 100.0 3.4E-30 1.2E-34 331.6 37.8 314 775-1094 19-604 (902)
40 3odt_A Protein DOA1; ubiquitin 100.0 3.4E-29 1.2E-33 280.1 40.0 268 804-1094 9-295 (313)
41 3ei3_B DNA damage-binding prot 100.0 3.9E-30 1.3E-34 298.2 33.1 274 775-1094 75-381 (383)
42 2oaj_A Protein SNI1; WD40 repe 100.0 1.5E-29 5E-34 325.7 41.2 312 776-1093 101-659 (902)
43 3sfz_A APAF-1, apoptotic pepti 100.0 8.9E-30 3E-34 340.8 40.1 305 772-1094 614-1033(1249)
44 4h5i_A Guanine nucleotide-exch 100.0 1.9E-29 6.5E-34 291.5 37.3 275 778-1094 19-342 (365)
45 1p22_A F-BOX/WD-repeat protein 100.0 9.3E-30 3.2E-34 301.0 34.0 266 778-1094 136-413 (435)
46 1r5m_A SIR4-interacting protei 100.0 1.5E-29 5.1E-34 295.5 35.4 282 795-1093 25-359 (425)
47 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.8E-29 6.1E-34 289.2 35.1 250 805-1093 7-281 (345)
48 4gqb_B Methylosome protein 50; 100.0 7.7E-30 2.6E-34 292.2 32.0 232 779-1054 88-333 (344)
49 4ggc_A P55CDC, cell division c 100.0 6.2E-29 2.1E-33 279.0 38.8 270 779-1093 31-313 (318)
50 3frx_A Guanine nucleotide-bind 100.0 3.1E-29 1.1E-33 283.9 36.3 268 772-1053 16-318 (319)
51 3sfz_A APAF-1, apoptotic pepti 100.0 7.2E-30 2.5E-34 341.7 36.1 304 774-1094 658-1115(1249)
52 2j04_B YDR362CP, TAU91; beta p 100.0 7.1E-31 2.4E-35 316.8 23.7 296 782-1094 170-516 (524)
53 3k26_A Polycomb protein EED; W 100.0 6.1E-30 2.1E-34 292.7 29.5 279 775-1094 20-365 (366)
54 3mkq_A Coatomer beta'-subunit; 100.0 4.4E-29 1.5E-33 318.7 39.9 304 773-1093 13-384 (814)
55 4ery_A WD repeat-containing pr 100.0 6.5E-29 2.2E-33 279.4 36.6 244 805-1094 15-267 (312)
56 3dwl_C Actin-related protein 2 100.0 1.4E-30 4.8E-35 300.8 23.2 281 775-1093 13-377 (377)
57 3bg1_A Protein SEC13 homolog; 100.0 3.9E-30 1.3E-34 290.9 26.0 247 807-1093 7-291 (316)
58 3i2n_A WD repeat-containing pr 100.0 2.1E-29 7.3E-34 287.4 32.4 278 806-1094 11-352 (357)
59 4g56_B MGC81050 protein; prote 100.0 8.4E-30 2.9E-34 293.5 28.8 264 784-1094 16-300 (357)
60 3gre_A Serine/threonine-protei 100.0 7.9E-30 2.7E-34 301.2 28.0 277 772-1092 62-437 (437)
61 2hes_X YDR267CP; beta-propelle 100.0 9.6E-29 3.3E-33 281.2 35.8 264 780-1052 19-328 (330)
62 2pbi_B Guanine nucleotide-bind 100.0 1E-28 3.6E-33 284.0 35.8 266 771-1049 62-354 (354)
63 1pgu_A Actin interacting prote 100.0 1.3E-28 4.6E-33 302.9 39.0 297 773-1093 18-364 (615)
64 3iz6_a 40S ribosomal protein R 100.0 1.1E-29 3.8E-34 295.0 24.2 276 771-1054 64-377 (380)
65 4a11_B DNA excision repair pro 100.0 8.2E-29 2.8E-33 287.8 31.1 289 795-1094 23-364 (408)
66 2xzm_R RACK1; ribosome, transl 100.0 8.1E-28 2.8E-32 275.0 37.4 244 805-1093 13-283 (343)
67 3mmy_A MRNA export factor; mRN 100.0 5.2E-28 1.8E-32 276.6 35.1 274 804-1092 30-343 (368)
68 3f3f_A Nucleoporin SEH1; struc 100.0 6.2E-28 2.1E-32 272.7 35.2 252 806-1094 4-336 (351)
69 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.7E-27 9.1E-32 280.6 42.0 263 807-1094 112-390 (445)
70 3jrp_A Fusion protein of prote 100.0 3.5E-28 1.2E-32 279.5 33.0 249 805-1093 3-285 (379)
71 1yfq_A Cell cycle arrest prote 100.0 1.1E-27 3.8E-32 271.9 35.7 263 807-1087 5-315 (342)
72 3dw8_B Serine/threonine-protei 100.0 2.4E-28 8.2E-33 288.6 30.7 278 774-1092 29-443 (447)
73 3gre_A Serine/threonine-protei 100.0 1.9E-28 6.4E-33 289.3 29.1 277 777-1094 31-358 (437)
74 1erj_A Transcriptional repress 100.0 2.1E-27 7.4E-32 277.0 37.5 236 811-1094 62-340 (393)
75 2pm9_A Protein WEB1, protein t 100.0 1.3E-28 4.4E-33 287.7 26.6 272 814-1094 13-336 (416)
76 2aq5_A Coronin-1A; WD40 repeat 100.0 6E-28 2.1E-32 282.1 30.4 263 787-1093 49-340 (402)
77 2pm7_B Protein transport prote 100.0 1E-27 3.5E-32 268.4 30.9 255 772-1051 8-284 (297)
78 1k8k_C P40, ARP2/3 complex 41 100.0 1.5E-27 5.2E-32 274.0 32.8 246 808-1093 3-272 (372)
79 1gxr_A ESG1, transducin-like e 100.0 1E-26 3.4E-31 262.7 39.0 260 774-1050 52-335 (337)
80 4aow_A Guanine nucleotide-bind 100.0 6.4E-27 2.2E-31 265.2 36.2 267 770-1054 35-339 (340)
81 3mkq_A Coatomer beta'-subunit; 100.0 5.1E-27 1.7E-31 299.6 39.3 271 805-1093 5-300 (814)
82 3odt_A Protein DOA1; ubiquitin 100.0 1.2E-26 4.1E-31 259.4 34.8 265 774-1059 19-303 (313)
83 3dwl_C Actin-related protein 2 100.0 1.4E-28 4.9E-33 284.0 18.5 244 809-1093 7-279 (377)
84 3dm0_A Maltose-binding peripla 100.0 1.2E-26 4E-31 291.5 37.0 263 772-1052 381-693 (694)
85 3bg1_A Protein SEC13 homolog; 100.0 1.2E-27 4.1E-32 270.4 25.3 264 766-1051 6-292 (316)
86 3zwl_B Eukaryotic translation 100.0 2.8E-26 9.5E-31 262.3 36.7 268 772-1056 31-350 (369)
87 1sq9_A Antiviral protein SKI8; 100.0 1.4E-26 4.9E-31 268.8 33.2 258 780-1054 21-397 (397)
88 3vl1_A 26S proteasome regulato 100.0 5.8E-27 2E-31 274.5 30.1 263 815-1094 58-364 (420)
89 3ei3_B DNA damage-binding prot 100.0 8.5E-27 2.9E-31 270.1 31.2 243 806-1094 66-338 (383)
90 3v7d_B Cell division control p 100.0 5.5E-26 1.9E-30 270.4 37.2 264 778-1091 167-459 (464)
91 3k26_A Polycomb protein EED; W 100.0 3.4E-27 1.2E-31 269.8 25.6 246 806-1094 11-317 (366)
92 3i2n_A WD repeat-containing pr 100.0 5.8E-27 2E-31 267.2 27.3 276 774-1055 19-356 (357)
93 4e54_B DNA damage-binding prot 99.9 4.9E-27 1.7E-31 277.8 24.8 269 777-1055 123-433 (435)
94 3dw8_B Serine/threonine-protei 99.9 9.4E-27 3.2E-31 274.9 26.7 272 811-1094 26-372 (447)
95 2j04_B YDR362CP, TAU91; beta p 99.9 1E-27 3.5E-32 289.2 18.0 235 825-1093 175-426 (524)
96 3lrv_A PRE-mRNA-splicing facto 99.9 7.4E-27 2.5E-31 266.9 24.2 262 780-1091 43-329 (343)
97 3jro_A Fusion protein of prote 99.9 9.2E-27 3.2E-31 294.9 27.5 248 806-1094 2-284 (753)
98 1p22_A F-BOX/WD-repeat protein 99.9 1.9E-25 6.5E-30 264.0 36.8 234 809-1093 129-363 (435)
99 2xyi_A Probable histone-bindin 99.9 3.6E-26 1.2E-30 269.9 30.0 246 807-1094 122-409 (430)
100 4a11_B DNA excision repair pro 99.9 1.7E-25 6E-30 259.7 34.7 305 772-1093 42-403 (408)
101 4gq1_A NUP37; propeller, trans 99.9 3.4E-26 1.2E-30 266.9 28.8 273 782-1092 27-386 (393)
102 3vu4_A KMHSV2; beta-propeller 99.9 2.6E-25 9E-30 255.7 33.6 272 804-1093 10-334 (355)
103 3jrp_A Fusion protein of prote 99.9 1.1E-25 3.7E-30 258.7 29.3 257 771-1052 9-287 (379)
104 3f3f_A Nucleoporin SEH1; struc 99.9 1.5E-25 5.3E-30 253.0 30.0 259 771-1059 9-344 (351)
105 2j04_A TAU60, YPL007P, hypothe 99.9 1.5E-26 5.2E-31 272.7 22.4 261 774-1093 16-295 (588)
106 4aez_A CDC20, WD repeat-contai 99.9 5.4E-25 1.9E-29 257.1 33.7 253 775-1071 136-399 (401)
107 3bws_A Protein LP49; two-domai 99.9 3E-24 1E-28 252.6 37.9 275 779-1094 128-431 (433)
108 1l0q_A Surface layer protein; 99.9 6E-24 2.1E-28 246.4 39.3 260 785-1094 2-274 (391)
109 2vdu_B TRNA (guanine-N(7)-)-me 99.9 1.1E-24 3.9E-29 258.6 33.9 235 812-1093 101-389 (450)
110 2w18_A PALB2, fancn, partner a 99.9 1.5E-24 5.3E-29 241.0 31.5 265 787-1094 56-356 (356)
111 4gga_A P55CDC, cell division c 99.9 1.2E-24 4.2E-29 255.9 32.4 244 775-1059 149-402 (420)
112 2aq5_A Coronin-1A; WD40 repeat 99.9 6E-25 2.1E-29 256.7 27.7 238 816-1094 37-298 (402)
113 4h5i_A Guanine nucleotide-exch 99.9 2.5E-24 8.6E-29 248.5 31.4 231 780-1052 78-343 (365)
114 3mmy_A MRNA export factor; mRN 99.9 1.7E-24 5.8E-29 247.4 28.0 258 772-1050 38-344 (368)
115 1yfq_A Cell cycle arrest prote 99.9 3.9E-24 1.3E-28 242.6 28.9 261 773-1049 11-321 (342)
116 2vdu_B TRNA (guanine-N(7)-)-me 99.9 6.7E-24 2.3E-28 251.9 31.2 202 853-1093 100-337 (450)
117 3jro_A Fusion protein of prote 99.9 1E-24 3.5E-29 276.2 23.4 262 768-1054 4-287 (753)
118 4ggc_A P55CDC, cell division c 99.9 2.9E-23 1E-27 232.6 31.5 239 775-1054 69-317 (318)
119 2j04_A TAU60, YPL007P, hypothe 99.9 5.2E-25 1.8E-29 259.7 16.4 266 771-1084 50-350 (588)
120 3lrv_A PRE-mRNA-splicing facto 99.9 3.7E-24 1.3E-28 244.5 22.3 219 824-1093 49-290 (343)
121 2xyi_A Probable histone-bindin 99.9 5E-23 1.7E-27 243.0 27.9 235 778-1053 133-411 (430)
122 3vu4_A KMHSV2; beta-propeller 99.9 7.1E-23 2.4E-27 235.3 28.2 232 837-1094 3-270 (355)
123 4gq1_A NUP37; propeller, trans 99.9 3.1E-23 1E-27 241.9 24.4 254 779-1050 95-387 (393)
124 3bws_A Protein LP49; two-domai 99.9 4.6E-22 1.6E-26 233.9 29.8 257 790-1094 94-389 (433)
125 1l0q_A Surface layer protein; 99.9 6E-21 2E-25 221.1 34.9 267 778-1093 36-340 (391)
126 2hqs_A Protein TOLB; TOLB, PAL 99.9 3.5E-21 1.2E-25 226.2 28.9 265 781-1094 70-386 (415)
127 1nir_A Nitrite reductase; hemo 99.9 2.6E-20 9E-25 226.0 37.4 299 781-1093 145-512 (543)
128 2w18_A PALB2, fancn, partner a 99.9 1.3E-20 4.5E-25 209.5 26.7 224 777-1050 115-355 (356)
129 3u4y_A Uncharacterized protein 99.9 2.8E-19 9.7E-24 201.9 32.6 269 785-1094 10-303 (331)
130 1ri6_A Putative isomerase YBHE 99.8 8.5E-19 2.9E-23 198.2 32.8 267 787-1093 7-306 (343)
131 2hqs_A Protein TOLB; TOLB, PAL 99.8 6.8E-19 2.3E-23 206.6 32.9 242 785-1076 143-409 (415)
132 1nir_A Nitrite reductase; hemo 99.8 6.4E-19 2.2E-23 213.9 31.4 255 821-1094 145-457 (543)
133 2ojh_A Uncharacterized protein 99.8 6.4E-19 2.2E-23 194.0 24.0 249 790-1086 17-293 (297)
134 2ecf_A Dipeptidyl peptidase IV 99.8 1.4E-18 4.8E-23 219.3 29.4 308 776-1093 39-457 (741)
135 1pby_B Quinohemoprotein amine 99.8 4.9E-18 1.7E-22 191.4 28.4 256 786-1094 2-309 (337)
136 3vgz_A Uncharacterized protein 99.8 2.8E-17 9.7E-22 186.8 34.7 262 779-1085 46-334 (353)
137 3hfq_A Uncharacterized protein 99.8 2.8E-17 9.6E-22 187.2 32.1 262 793-1093 14-315 (347)
138 1xfd_A DIP, dipeptidyl aminope 99.8 2.2E-18 7.5E-23 216.9 24.7 310 778-1093 21-391 (723)
139 1k32_A Tricorn protease; prote 99.8 1.5E-17 5.2E-22 218.2 32.7 296 776-1094 55-460 (1045)
140 2z3z_A Dipeptidyl aminopeptida 99.8 1.1E-17 3.9E-22 209.9 30.0 296 785-1094 35-434 (706)
141 1wgm_A Ubiquitin conjugation f 99.8 3.4E-19 1.2E-23 162.2 8.3 78 155-234 14-92 (98)
142 2kre_A Ubiquitin conjugation f 99.8 4.6E-19 1.6E-23 161.9 7.6 75 156-232 22-96 (100)
143 1k32_A Tricorn protease; prote 99.8 1.1E-16 3.8E-21 210.0 33.4 290 781-1093 159-500 (1045)
144 2kr4_A Ubiquitin conjugation f 99.8 4.2E-19 1.4E-23 157.5 6.9 74 157-232 8-81 (85)
145 2ecf_A Dipeptidyl peptidase IV 99.8 5.7E-17 1.9E-21 204.6 26.8 261 813-1093 36-411 (741)
146 2ojh_A Uncharacterized protein 99.7 1.4E-16 4.8E-21 175.1 25.3 222 828-1094 17-257 (297)
147 3o4h_A Acylamino-acid-releasin 99.7 1.6E-16 5.4E-21 194.9 26.5 275 765-1093 13-313 (582)
148 3vgz_A Uncharacterized protein 99.7 1.8E-15 6.2E-20 171.8 33.5 241 813-1094 40-302 (353)
149 3u4y_A Uncharacterized protein 99.7 6.9E-16 2.4E-20 174.0 28.4 223 825-1094 12-251 (331)
150 1ri6_A Putative isomerase YBHE 99.7 1E-15 3.6E-20 172.7 29.8 262 777-1077 41-335 (343)
151 3scy_A Hypothetical bacterial 99.7 5.4E-15 1.8E-19 169.4 35.9 278 785-1093 13-335 (361)
152 1jmx_B Amine dehydrogenase; ox 99.7 5E-16 1.7E-20 176.0 25.9 239 819-1094 5-324 (349)
153 2oit_A Nucleoporin 214KDA; NH2 99.7 6.6E-16 2.3E-20 182.1 27.4 201 776-1014 39-279 (434)
154 1t1h_A Gspef-atpub14, armadill 99.7 4.6E-18 1.6E-22 149.1 5.7 73 159-232 4-76 (78)
155 2f42_A STIP1 homology and U-bo 99.7 6.3E-18 2.1E-22 169.3 6.8 75 159-234 102-176 (179)
156 2z3z_A Dipeptidyl aminopeptida 99.7 9.8E-16 3.4E-20 192.2 28.4 260 776-1054 84-437 (706)
157 1xfd_A DIP, dipeptidyl aminope 99.7 2.6E-16 8.8E-21 198.0 20.0 240 814-1092 17-341 (723)
158 3o4h_A Acylamino-acid-releasin 99.7 6E-16 2E-20 189.7 22.7 230 812-1093 20-274 (582)
159 1jmx_B Amine dehydrogenase; ox 99.7 1.6E-14 5.4E-19 163.6 30.1 261 780-1060 6-333 (349)
160 2oit_A Nucleoporin 214KDA; NH2 99.7 2E-15 7E-20 177.9 23.2 249 795-1091 23-329 (434)
161 3hfq_A Uncharacterized protein 99.7 2.6E-14 8.9E-19 162.6 31.1 242 778-1056 44-323 (347)
162 1jof_A Carboxy-CIS,CIS-muconat 99.7 1.4E-14 4.9E-19 166.5 28.6 268 787-1093 4-339 (365)
163 2yu4_A E3 SUMO-protein ligase 99.7 5.6E-17 1.9E-21 147.0 6.1 72 161-233 5-85 (94)
164 1z68_A Fibroblast activation p 99.7 9.3E-16 3.2E-20 192.9 18.9 303 778-1093 20-389 (719)
165 1pby_B Quinohemoprotein amine 99.7 1.6E-14 5.6E-19 162.4 27.3 249 777-1061 37-319 (337)
166 3scy_A Hypothetical bacterial 99.6 7.8E-14 2.7E-18 159.6 32.0 260 778-1073 54-360 (361)
167 2c2l_A CHIP, carboxy terminus 99.6 3.1E-16 1.1E-20 173.7 7.1 76 157-233 202-277 (281)
168 3pe7_A Oligogalacturonate lyas 99.6 1.6E-13 5.3E-18 158.4 28.0 273 779-1093 41-380 (388)
169 1z68_A Fibroblast activation p 99.6 4.7E-15 1.6E-19 186.5 16.2 236 818-1093 20-344 (719)
170 2oiz_A Aromatic amine dehydrog 99.6 8E-13 2.7E-17 151.8 31.9 284 784-1077 14-360 (361)
171 3ztg_A E3 ubiquitin-protein li 99.6 2.4E-15 8.1E-20 136.3 7.9 74 158-232 8-84 (92)
172 4a5s_A Dipeptidyl peptidase 4 99.6 6.4E-13 2.2E-17 167.7 33.2 305 778-1092 21-446 (740)
173 3fvz_A Peptidyl-glycine alpha- 99.6 1.7E-12 5.8E-17 146.9 33.3 227 833-1093 69-320 (329)
174 4a5s_A Dipeptidyl peptidase 4 99.6 8.3E-14 2.8E-18 175.8 22.3 238 814-1093 17-351 (740)
175 1jof_A Carboxy-CIS,CIS-muconat 99.6 1.2E-12 4.1E-17 150.4 29.9 241 825-1093 4-289 (365)
176 2dg1_A DRP35, lactonase; beta 99.5 3.9E-12 1.3E-16 143.6 31.6 267 778-1086 10-301 (333)
177 1q7f_A NHL, brain tumor CG1071 99.5 7.1E-12 2.4E-16 138.2 32.6 236 810-1093 26-278 (286)
178 3fl2_A E3 ubiquitin-protein li 99.5 1.1E-14 3.9E-19 139.6 4.9 67 162-229 51-118 (124)
179 2oiz_A Aromatic amine dehydrog 99.5 5.8E-12 2E-16 144.6 28.3 251 831-1094 29-333 (361)
180 3c5m_A Oligogalacturonate lyas 99.5 1.3E-12 4.4E-17 150.7 21.7 272 777-1092 39-379 (396)
181 2xdw_A Prolyl endopeptidase; a 99.5 2.4E-11 8.2E-16 152.5 34.5 275 778-1093 76-412 (710)
182 3azo_A Aminopeptidase; POP fam 99.5 3.9E-12 1.3E-16 158.1 26.4 278 774-1091 24-363 (662)
183 3azo_A Aminopeptidase; POP fam 99.5 1.6E-12 5.6E-17 161.5 22.1 250 807-1092 17-320 (662)
184 2bkl_A Prolyl endopeptidase; m 99.4 6.9E-12 2.4E-16 157.0 27.5 277 774-1093 68-395 (695)
185 3htk_C E3 SUMO-protein ligase 99.4 6.8E-14 2.3E-18 146.1 7.5 71 159-230 177-251 (267)
186 2gop_A Trilobed protease; beta 99.4 2.2E-11 7.6E-16 138.0 29.1 250 784-1093 23-329 (347)
187 1z6u_A NP95-like ring finger p 99.4 3.6E-14 1.2E-18 140.1 5.0 68 161-229 76-144 (150)
188 3pe7_A Oligogalacturonate lyas 99.4 6.5E-12 2.2E-16 144.7 24.7 268 805-1094 22-328 (388)
189 3no2_A Uncharacterized protein 99.4 1.7E-11 5.9E-16 135.0 26.7 219 822-1083 3-231 (276)
190 3e5z_A Putative gluconolactona 99.4 2.9E-11 1E-15 134.1 28.6 250 807-1088 21-280 (296)
191 3dsm_A Uncharacterized protein 99.4 4.3E-11 1.5E-15 135.3 30.4 257 793-1094 15-301 (328)
192 2y43_A E3 ubiquitin-protein li 99.4 5.1E-14 1.8E-18 129.3 3.3 69 161-231 20-89 (99)
193 1q7f_A NHL, brain tumor CG1071 99.4 1.2E-10 4.2E-15 128.2 31.3 231 779-1053 35-281 (286)
194 3lrq_A E3 ubiquitin-protein li 99.4 7E-14 2.4E-18 128.4 4.1 71 161-232 20-91 (100)
195 2ecw_A Tripartite motif-contai 99.4 8.7E-14 3E-18 124.0 2.4 65 159-224 15-84 (85)
196 1jm7_B BARD1, BRCA1-associated 99.4 6.6E-14 2.3E-18 132.7 1.1 66 161-230 20-86 (117)
197 2egp_A Tripartite motif-contai 99.4 1.9E-14 6.5E-19 126.3 -2.7 64 159-223 8-77 (79)
198 2yur_A Retinoblastoma-binding 99.4 5.9E-13 2E-17 114.9 6.7 61 157-217 9-71 (74)
199 1qks_A Cytochrome CD1 nitrite 99.4 1E-09 3.6E-14 132.8 37.8 296 785-1093 167-536 (567)
200 3l11_A E3 ubiquitin-protein li 99.4 1E-13 3.4E-18 131.1 1.9 67 161-228 13-86 (115)
201 2ecv_A Tripartite motif-contai 99.4 1.5E-13 5E-18 122.5 2.1 65 158-223 14-83 (85)
202 2ckl_A Polycomb group ring fin 99.3 2.7E-13 9.1E-18 126.6 3.8 68 160-229 12-84 (108)
203 2ecy_A TNF receptor-associated 99.3 8.5E-13 2.9E-17 111.2 6.5 55 159-213 11-65 (66)
204 3hct_A TNF receptor-associated 99.3 3.3E-13 1.1E-17 128.1 4.4 78 159-237 14-91 (118)
205 2z2n_A Virginiamycin B lyase; 99.3 3.4E-09 1.2E-13 116.6 37.6 261 781-1092 22-292 (299)
206 2csy_A Zinc finger protein 183 99.3 5.4E-13 1.8E-17 117.5 5.0 62 159-223 11-72 (81)
207 2bay_A PRE-mRNA splicing facto 99.3 2.8E-13 9.6E-18 111.2 2.3 54 163-218 3-57 (61)
208 3c5m_A Oligogalacturonate lyas 99.3 2.9E-11 9.9E-16 139.3 19.5 245 816-1093 38-327 (396)
209 2djb_A Polycomb group ring fin 99.3 1.8E-12 6.1E-17 111.3 6.9 58 158-217 10-68 (72)
210 2ckl_B Ubiquitin ligase protei 99.3 6.3E-13 2.1E-17 134.3 3.7 72 159-230 50-122 (165)
211 3fvz_A Peptidyl-glycine alpha- 99.3 5E-10 1.7E-14 126.5 28.1 239 779-1051 29-321 (329)
212 1rwi_B Serine/threonine-protei 99.3 3.2E-10 1.1E-14 123.4 25.6 232 815-1093 25-262 (270)
213 2ysl_A Tripartite motif-contai 99.3 2.4E-12 8.1E-17 111.0 6.6 56 158-213 15-72 (73)
214 1yr2_A Prolyl oligopeptidase; 99.3 4.5E-10 1.6E-14 141.6 29.4 277 776-1093 109-439 (741)
215 2gop_A Trilobed protease; beta 99.3 3.9E-10 1.3E-14 127.6 25.8 223 832-1093 42-289 (347)
216 3now_A UNC-45 protein, SD10334 99.3 2.2E-11 7.5E-16 150.5 16.4 314 271-609 333-694 (810)
217 4ayc_A E3 ubiquitin-protein li 99.3 1.1E-12 3.7E-17 128.1 3.9 63 163-229 53-115 (138)
218 2dg1_A DRP35, lactonase; beta 99.3 2.3E-10 7.8E-15 129.0 23.4 234 814-1093 6-261 (333)
219 2ysj_A Tripartite motif-contai 99.3 4.5E-12 1.5E-16 105.7 6.9 47 158-204 15-63 (63)
220 3l6x_A Catenin delta-1; cateni 99.3 1.4E-10 4.9E-15 138.7 22.4 321 269-608 50-431 (584)
221 2mad_H Methylamine dehydrogena 99.3 7.2E-09 2.5E-13 119.1 35.8 263 783-1094 30-349 (373)
222 1jm7_A BRCA1, breast cancer ty 99.3 1.1E-12 3.6E-17 123.6 2.7 67 162-229 20-88 (112)
223 1xm9_A Plakophilin 1; armadill 99.3 1.4E-10 4.7E-15 137.4 21.6 318 270-608 5-405 (457)
224 3sjl_D Methylamine dehydrogena 99.3 1.1E-09 3.7E-14 125.0 27.6 284 782-1075 41-384 (386)
225 1rmd_A RAG1; V(D)J recombinati 99.3 1.3E-12 4.4E-17 123.7 2.8 71 160-230 20-90 (116)
226 3ul1_B Importin subunit alpha- 99.2 5.7E-11 1.9E-15 142.9 16.7 316 269-608 59-386 (510)
227 2z2n_A Virginiamycin B lyase; 99.2 1.3E-08 4.5E-13 111.8 34.7 235 811-1093 12-253 (299)
228 3nmw_A APC variant protein; AR 99.2 2.9E-11 1E-15 137.3 13.1 263 328-609 46-334 (354)
229 3nmw_A APC variant protein; AR 99.2 3.6E-11 1.2E-15 136.5 13.7 203 327-549 97-317 (354)
230 1g25_A CDK-activating kinase a 99.2 3.9E-12 1.3E-16 106.8 4.2 55 162-217 2-61 (65)
231 1qks_A Cytochrome CD1 nitrite 99.2 1E-08 3.5E-13 124.1 35.4 229 825-1093 169-419 (567)
232 3knv_A TNF receptor-associated 99.2 9.7E-13 3.3E-17 128.3 -0.1 71 158-229 26-105 (141)
233 1pjx_A Dfpase, DIISOPROPYLFLUO 99.2 4.6E-09 1.6E-13 116.8 29.9 251 812-1093 16-297 (314)
234 2xdw_A Prolyl endopeptidase; a 99.2 1.1E-09 3.6E-14 137.5 27.2 240 777-1054 128-416 (710)
235 3hcs_A TNF receptor-associated 99.2 6.5E-12 2.2E-16 127.5 4.3 70 159-229 14-83 (170)
236 3nmz_A APC variant protein; pr 99.2 2.7E-10 9.3E-15 133.3 18.5 258 333-609 167-450 (458)
237 3q7m_A Lipoprotein YFGL, BAMB; 99.2 3E-08 1E-12 113.9 34.7 287 784-1092 52-375 (376)
238 2ct2_A Tripartite motif protei 99.2 2.8E-11 9.6E-16 108.4 7.2 56 157-212 9-70 (88)
239 3ng2_A RNF4, snurf, ring finge 99.2 8.5E-12 2.9E-16 106.8 3.5 55 161-217 8-69 (71)
240 3dsm_A Uncharacterized protein 99.2 2.6E-09 9E-14 120.6 24.9 217 831-1093 15-251 (328)
241 3tpo_A Importin subunit alpha- 99.2 3.8E-10 1.3E-14 136.4 18.8 319 269-608 78-405 (529)
242 2qc5_A Streptogramin B lactona 99.2 6E-08 2.1E-12 106.6 35.1 263 781-1093 27-298 (300)
243 1xm9_A Plakophilin 1; armadill 99.2 4E-09 1.4E-13 124.8 27.1 323 269-610 46-450 (457)
244 2d8t_A Dactylidin, ring finger 99.2 7.3E-12 2.5E-16 107.1 2.1 51 161-212 13-63 (71)
245 3no2_A Uncharacterized protein 99.2 6.6E-09 2.3E-13 114.2 26.4 232 784-1060 4-260 (276)
246 3nmz_A APC variant protein; pr 99.2 1.1E-10 3.6E-15 136.8 12.5 220 327-566 213-450 (458)
247 1jdh_A Beta-catenin; beta-cate 99.1 4.6E-10 1.6E-14 135.3 18.5 304 279-610 28-340 (529)
248 2z6h_A Catenin beta-1, beta-ca 99.1 4.1E-10 1.4E-14 139.5 18.0 304 279-610 25-337 (644)
249 3sjl_D Methylamine dehydrogena 99.1 1.5E-08 5.3E-13 115.4 29.4 258 825-1094 46-362 (386)
250 2ecj_A Tripartite motif-contai 99.1 3.3E-11 1.1E-15 98.6 5.0 46 159-204 11-58 (58)
251 3tpo_A Importin subunit alpha- 99.1 5.5E-10 1.9E-14 134.9 18.0 311 271-608 123-448 (529)
252 3e5z_A Putative gluconolactona 99.1 4.9E-09 1.7E-13 116.0 24.3 231 778-1055 32-289 (296)
253 2z6g_A B-catenin; FULL-length, 99.1 4.5E-10 1.5E-14 141.8 17.8 304 279-610 161-473 (780)
254 2bkl_A Prolyl endopeptidase; m 99.1 1E-09 3.5E-14 137.3 19.9 238 777-1055 124-400 (695)
255 3ul1_B Importin subunit alpha- 99.1 4.9E-10 1.7E-14 134.7 16.1 311 271-608 104-429 (510)
256 1rwi_B Serine/threonine-protei 99.1 8.9E-09 3.1E-13 111.8 24.5 228 781-1054 31-266 (270)
257 2ea6_A Ring finger protein 4; 99.1 5.9E-11 2E-15 100.8 5.4 51 159-210 11-68 (69)
258 2qc5_A Streptogramin B lactona 99.1 1.6E-07 5.5E-12 103.1 34.4 235 811-1093 17-258 (300)
259 1e4u_A Transcriptional repress 99.1 5.1E-11 1.8E-15 103.0 4.4 55 160-214 8-66 (78)
260 1xip_A Nucleoporin NUP159; bet 99.1 1.8E-09 6.1E-14 123.6 18.4 184 857-1083 39-232 (388)
261 3g4e_A Regucalcin; six bladed 99.1 9.8E-08 3.4E-12 105.9 32.1 234 812-1084 11-261 (297)
262 2xeu_A Ring finger protein 4; 99.1 2.3E-11 8E-16 101.7 1.9 53 163-217 3-62 (64)
263 3l6x_A Catenin delta-1; cateni 99.1 1.6E-09 5.5E-14 129.6 18.0 278 315-609 50-384 (584)
264 3now_A UNC-45 protein, SD10334 99.1 3.1E-09 1.1E-13 131.4 20.9 302 283-609 394-737 (810)
265 3m62_A Ubiquitin conjugation f 99.1 5.9E-11 2E-15 145.0 5.0 74 158-233 886-960 (968)
266 2ect_A Ring finger protein 126 99.1 1.3E-10 4.5E-15 101.3 5.6 56 160-217 12-70 (78)
267 3c75_H MADH, methylamine dehyd 99.0 4.7E-08 1.6E-12 113.4 27.8 251 833-1094 99-401 (426)
268 2ghs_A AGR_C_1268P; regucalcin 99.0 2.1E-07 7.3E-12 104.7 32.7 224 815-1084 50-291 (326)
269 4b8j_A Importin subunit alpha- 99.0 2.4E-09 8.2E-14 129.3 16.1 315 267-608 74-399 (528)
270 3hrp_A Uncharacterized protein 99.0 2.8E-07 9.6E-12 107.3 32.8 235 814-1094 131-409 (409)
271 3c75_H MADH, methylamine dehyd 99.0 4.4E-08 1.5E-12 113.6 25.3 268 783-1059 82-409 (426)
272 3iuj_A Prolyl endopeptidase; h 99.0 3.9E-08 1.3E-12 122.8 26.4 241 811-1093 126-403 (693)
273 1yr2_A Prolyl oligopeptidase; 99.0 3.2E-08 1.1E-12 124.6 25.8 237 777-1054 166-443 (741)
274 1bor_A Transcription factor PM 99.0 1.1E-10 3.8E-15 94.4 2.0 46 162-211 5-50 (56)
275 1kb0_A Quinohemoprotein alcoho 99.0 8.8E-08 3E-12 118.9 28.8 274 781-1081 124-536 (677)
276 2z6h_A Catenin beta-1, beta-ca 99.0 6.2E-09 2.1E-13 128.9 18.5 311 269-609 58-382 (644)
277 4hxt_A De novo protein OR329; 99.0 1.8E-09 6.2E-14 116.2 11.7 237 358-615 3-247 (252)
278 4hxt_A De novo protein OR329; 99.0 7.5E-09 2.6E-13 111.4 16.1 229 316-566 5-241 (252)
279 1yiq_A Quinohemoprotein alcoho 99.0 1.2E-07 4.3E-12 117.8 29.3 294 784-1080 69-533 (689)
280 1chc_A Equine herpes virus-1 r 99.0 4E-10 1.4E-14 95.3 4.7 47 163-210 5-52 (68)
281 1pjx_A Dfpase, DIISOPROPYLFLUO 99.0 1.2E-07 4.1E-12 105.3 26.3 230 780-1052 24-299 (314)
282 3dr2_A Exported gluconolactona 99.0 9.9E-08 3.4E-12 106.2 25.5 248 810-1089 41-301 (305)
283 1xip_A Nucleoporin NUP159; bet 98.9 1.9E-08 6.6E-13 115.1 18.9 177 776-1001 40-233 (388)
284 2ecm_A Ring finger and CHY zin 98.9 6E-10 2E-14 89.9 4.6 46 163-209 5-54 (55)
285 1wa5_B Importin alpha subunit; 98.9 9.9E-09 3.4E-13 124.0 17.5 299 283-608 146-456 (530)
286 4b8j_A Importin subunit alpha- 98.9 1.5E-08 5.1E-13 122.3 18.9 300 282-608 132-442 (528)
287 2jdq_A Importin alpha-1 subuni 98.9 1.3E-08 4.5E-13 119.7 17.8 302 281-608 78-389 (450)
288 3tt9_A Plakophilin-2; cell adh 98.9 5.2E-09 1.8E-13 110.8 12.5 186 317-517 12-230 (233)
289 1jdh_A Beta-catenin; beta-cate 98.9 1.5E-08 5.2E-13 121.9 18.4 311 269-609 61-385 (529)
290 2ep4_A Ring finger protein 24; 98.9 1.1E-09 3.9E-14 94.3 6.1 53 159-212 11-66 (74)
291 2ecn_A Ring finger protein 141 98.9 2.8E-10 9.7E-15 96.9 2.2 52 159-212 11-62 (70)
292 1iym_A EL5; ring-H2 finger, ub 98.9 5.7E-10 2E-14 90.0 3.7 48 161-209 3-54 (55)
293 2kiz_A E3 ubiquitin-protein li 98.9 1.4E-09 4.9E-14 92.2 6.3 50 161-211 12-64 (69)
294 4db8_A Armadillo-repeat protei 98.9 6.3E-09 2.2E-13 112.3 12.6 224 318-564 17-249 (252)
295 2z6g_A B-catenin; FULL-length, 98.9 1.7E-08 5.9E-13 127.3 18.5 311 269-609 194-518 (780)
296 2l0b_A E3 ubiquitin-protein li 98.9 9.3E-10 3.2E-14 98.8 4.5 49 161-210 38-89 (91)
297 2jdq_A Importin alpha-1 subuni 98.9 4.4E-08 1.5E-12 115.2 20.0 318 269-609 22-347 (450)
298 1x4j_A Ring finger protein 38; 98.9 1.1E-09 3.8E-14 94.6 4.4 48 162-210 22-72 (75)
299 1mda_H Methylamine dehydrogena 98.9 1.5E-07 5.1E-12 107.3 23.0 244 834-1094 47-345 (368)
300 1wa5_B Importin alpha subunit; 98.9 2.6E-08 9E-13 120.2 17.6 313 269-608 89-411 (530)
301 4db8_A Armadillo-repeat protei 98.9 2.5E-08 8.5E-13 107.6 15.6 225 271-514 16-249 (252)
302 2hz6_A Endoplasmic reticulum t 98.8 1.4E-09 4.9E-14 124.9 5.9 204 821-1077 7-216 (369)
303 4ap4_A E3 ubiquitin ligase RNF 98.8 6.7E-10 2.3E-14 107.7 2.3 52 162-214 6-64 (133)
304 3g4e_A Regucalcin; six bladed 98.8 7.1E-07 2.4E-11 98.9 27.2 217 785-1040 25-260 (297)
305 3q7m_A Lipoprotein YFGL, BAMB; 98.8 5E-06 1.7E-10 95.1 34.5 252 821-1093 51-335 (376)
306 1kb0_A Quinohemoprotein alcoho 98.8 7.2E-07 2.4E-11 110.7 28.7 293 785-1094 77-506 (677)
307 2qe8_A Uncharacterized protein 98.8 1.8E-07 6.2E-12 106.1 21.5 241 814-1087 17-313 (343)
308 1v87_A Deltex protein 2; ring- 98.8 2.5E-09 8.5E-14 100.7 5.0 49 163-211 25-95 (114)
309 1mda_H Methylamine dehydrogena 98.8 2.9E-07 9.8E-12 105.0 21.8 272 787-1074 34-366 (368)
310 4db6_A Armadillo repeat protei 98.8 4.8E-08 1.6E-12 102.2 13.9 181 321-514 19-207 (210)
311 2ghs_A AGR_C_1268P; regucalcin 98.8 2E-06 6.8E-11 96.7 28.2 218 780-1041 55-291 (326)
312 4ic3_A E3 ubiquitin-protein li 98.8 1.3E-09 4.5E-14 93.6 1.4 43 163-210 24-67 (74)
313 3hrp_A Uncharacterized protein 98.8 1.6E-06 5.5E-11 100.8 27.4 236 779-1050 136-408 (409)
314 2mad_H Methylamine dehydrogena 98.7 6.4E-06 2.2E-10 94.4 31.9 240 778-1059 70-357 (373)
315 1npe_A Nidogen, entactin; glyc 98.7 2E-05 6.9E-10 85.4 33.4 246 787-1077 3-263 (267)
316 2y1n_A E3 ubiquitin-protein li 98.7 6.7E-09 2.3E-13 116.1 5.1 50 163-212 332-381 (389)
317 4db6_A Armadillo repeat protei 98.7 4.2E-08 1.4E-12 102.7 9.8 195 394-609 15-209 (210)
318 1wim_A KIAA0161 protein; ring 98.7 2.9E-09 1E-13 96.3 0.7 65 163-229 5-83 (94)
319 3iuj_A Prolyl endopeptidase; h 98.7 8.7E-07 3E-11 110.6 22.8 235 778-1055 133-408 (693)
320 3dr2_A Exported gluconolactona 98.6 2.1E-06 7.2E-11 95.4 23.2 224 780-1044 51-299 (305)
321 2ecg_A Baculoviral IAP repeat- 98.6 7.4E-09 2.5E-13 89.3 2.2 44 163-211 25-69 (75)
322 1xqr_A HSPBP1 protein; armadil 98.6 7.9E-08 2.7E-12 106.1 10.9 180 415-609 57-238 (296)
323 1xqr_A HSPBP1 protein; armadil 98.6 3.3E-07 1.1E-11 101.2 15.7 202 266-517 27-239 (296)
324 1yiq_A Quinohemoprotein alcoho 98.6 7.7E-06 2.6E-10 101.6 29.8 264 822-1093 69-503 (689)
325 3hxj_A Pyrrolo-quinoline quino 98.6 2.9E-06 9.9E-11 94.7 23.2 249 786-1093 71-322 (330)
326 4ap4_A E3 ubiquitin ligase RNF 98.6 6.2E-09 2.1E-13 100.8 0.9 55 161-217 70-131 (133)
327 2ecl_A Ring-box protein 2; RNF 98.6 2.5E-08 8.6E-13 87.2 3.8 47 163-210 15-76 (81)
328 3opb_A SWI5-dependent HO expre 98.6 1.3E-06 4.5E-11 106.1 19.6 294 286-609 312-635 (778)
329 3hxj_A Pyrrolo-quinoline quino 98.6 8.3E-07 2.8E-11 99.2 16.7 249 785-1093 30-282 (330)
330 2vje_A E3 ubiquitin-protein li 98.5 3.7E-08 1.3E-12 81.8 3.6 46 163-209 8-56 (64)
331 2vje_B MDM4 protein; proto-onc 98.5 5.5E-08 1.9E-12 80.5 3.4 46 163-209 7-55 (63)
332 1kv9_A Type II quinohemoprotei 98.5 3.7E-05 1.2E-09 95.2 30.0 297 784-1083 65-520 (668)
333 3opb_A SWI5-dependent HO expre 98.5 1.8E-06 6.1E-11 104.9 17.0 286 310-609 373-728 (778)
334 2qe8_A Uncharacterized protein 98.4 6.5E-06 2.2E-10 93.1 20.1 210 846-1093 10-276 (343)
335 3tt9_A Plakophilin-2; cell adh 98.4 1.1E-07 3.6E-12 100.7 4.7 197 393-610 10-230 (233)
336 3dpl_R Ring-box protein 1; ubi 98.4 1.2E-07 4E-12 87.0 4.3 46 163-209 37-100 (106)
337 2yho_A E3 ubiquitin-protein li 98.4 4.7E-08 1.6E-12 84.8 0.9 43 163-210 18-61 (79)
338 4a2l_A BT_4663, two-component 98.4 0.0017 5.7E-08 82.1 43.0 288 787-1092 185-523 (795)
339 2ea5_A Cell growth regulator w 98.4 3.7E-07 1.3E-11 76.6 5.9 44 162-210 14-58 (68)
340 2iwa_A Glutamine cyclotransfer 98.4 6.8E-05 2.3E-09 80.9 25.0 201 846-1093 10-235 (266)
341 2hz6_A Endoplasmic reticulum t 98.4 2.2E-07 7.6E-12 106.6 5.9 180 866-1093 8-190 (369)
342 2ad6_A Methanol dehydrogenase 98.4 5.3E-05 1.8E-09 91.8 26.9 78 1004-1081 444-523 (571)
343 1fwx_A Nitrous oxide reductase 98.3 3.4E-06 1.1E-10 100.1 14.3 236 825-1084 103-407 (595)
344 3t6p_A Baculoviral IAP repeat- 98.3 1.1E-07 3.9E-12 106.0 1.5 45 161-210 293-338 (345)
345 2ece_A 462AA long hypothetical 98.3 0.00011 3.7E-09 84.4 25.6 240 825-1083 98-399 (462)
346 4a2l_A BT_4663, two-component 98.3 0.0015 5.2E-08 82.5 39.2 284 787-1092 227-568 (795)
347 2fp8_A Strictosidine synthase; 98.3 0.00027 9.1E-09 78.9 27.6 253 815-1093 20-311 (322)
348 3nol_A Glutamine cyclotransfer 98.3 0.00019 6.4E-09 76.6 24.6 190 846-1084 32-244 (262)
349 2ad6_A Methanol dehydrogenase 98.2 0.00018 6E-09 87.3 27.8 135 955-1093 272-492 (571)
350 1kv9_A Type II quinohemoprotei 98.2 0.00042 1.4E-08 85.7 31.6 260 822-1093 65-486 (668)
351 1flg_A Protein (quinoprotein e 98.2 0.00026 8.9E-09 85.9 29.0 77 1004-1080 466-544 (582)
352 1w6s_A Methanol dehydrogenase 98.2 0.00024 8.1E-09 86.2 28.1 75 1004-1078 453-529 (599)
353 2ece_A 462AA long hypothetical 98.2 0.00028 9.7E-09 80.9 25.9 227 783-1040 93-399 (462)
354 3mbr_X Glutamine cyclotransfer 98.2 0.00058 2E-08 72.2 25.7 190 846-1084 10-223 (243)
355 4a0k_B E3 ubiquitin-protein li 98.1 3E-07 1E-11 85.4 0.2 46 163-209 48-111 (117)
356 2iwa_A Glutamine cyclotransfer 98.1 0.0008 2.7E-08 72.5 27.1 195 814-1053 21-238 (266)
357 3v9f_A Two-component system se 98.1 0.003 1E-07 79.6 36.2 286 788-1092 224-565 (781)
358 2p4o_A Hypothetical protein; p 98.1 0.0013 4.3E-08 72.8 28.8 228 814-1085 32-278 (306)
359 1flg_A Protein (quinoprotein e 98.1 0.0007 2.4E-08 82.1 28.7 256 819-1093 113-514 (582)
360 3nok_A Glutaminyl cyclase; bet 98.1 0.00037 1.2E-08 74.4 22.5 188 847-1084 45-254 (268)
361 2d8s_A Cellular modulator of i 98.1 3.1E-06 1.1E-10 73.2 5.2 50 163-212 15-72 (80)
362 3v9f_A Two-component system se 98.0 0.0057 2E-07 77.0 36.9 290 786-1092 174-521 (781)
363 3nol_A Glutamine cyclotransfer 97.9 0.0019 6.6E-08 68.8 25.0 182 814-1041 43-244 (262)
364 1w6s_A Methanol dehydrogenase 97.9 0.0031 1.1E-07 76.4 30.2 265 822-1093 61-501 (599)
365 1npe_A Nidogen, entactin; glyc 97.9 0.008 2.7E-07 64.6 30.6 214 833-1093 10-236 (267)
366 1fwx_A Nitrous oxide reductase 97.9 0.00035 1.2E-08 83.0 20.5 202 866-1093 100-359 (595)
367 3v65_B Low-density lipoprotein 97.9 0.0096 3.3E-07 68.1 31.7 225 793-1060 94-326 (386)
368 3v64_C Agrin; beta propeller, 97.9 0.02 6.7E-07 64.6 33.5 223 794-1059 52-282 (349)
369 1k3i_A Galactose oxidase precu 97.8 0.00076 2.6E-08 83.3 22.9 258 818-1084 190-530 (656)
370 3grl_A General vesicular trans 97.8 0.00039 1.3E-08 82.5 18.0 297 266-607 20-340 (651)
371 2fp8_A Strictosidine synthase; 97.8 0.0046 1.6E-07 68.7 25.7 227 781-1052 26-313 (322)
372 1ijq_A LDL receptor, low-densi 97.7 0.065 2.2E-06 59.3 34.5 222 794-1059 9-245 (316)
373 3nok_A Glutaminyl cyclase; bet 97.7 0.0011 3.9E-08 70.6 18.2 150 935-1093 54-208 (268)
374 3mbr_X Glutamine cyclotransfer 97.7 0.0028 9.5E-08 67.0 20.9 153 933-1093 18-177 (243)
375 3p5b_L Low density lipoprotein 97.7 0.088 3E-06 60.4 35.0 228 793-1060 90-328 (400)
376 2xe4_A Oligopeptidase B; hydro 97.6 0.0044 1.5E-07 77.6 25.7 195 815-1050 175-398 (751)
377 2p4o_A Hypothetical protein; p 97.6 0.015 5.1E-07 64.0 26.3 225 780-1042 38-278 (306)
378 3tc9_A Hypothetical hydrolase; 97.6 0.024 8.3E-07 65.8 29.1 235 814-1093 137-428 (430)
379 3v64_C Agrin; beta propeller, 97.6 0.058 2E-06 60.6 31.4 230 816-1092 36-272 (349)
380 3v65_B Low-density lipoprotein 97.5 0.042 1.4E-06 62.8 30.0 228 818-1092 81-315 (386)
381 4hw6_A Hypothetical protein, I 97.5 0.043 1.5E-06 63.7 29.5 235 814-1093 139-431 (433)
382 2xbg_A YCF48-like protein; pho 97.4 0.071 2.4E-06 59.3 29.6 231 813-1092 79-319 (327)
383 3qqz_A Putative uncharacterize 97.4 0.12 4.1E-06 55.0 29.0 213 808-1052 21-253 (255)
384 3sov_A LRP-6, low-density lipo 97.4 0.11 3.9E-06 57.4 30.0 223 794-1059 12-245 (318)
385 3vk6_A E3 ubiquitin-protein li 97.3 0.00014 4.9E-09 63.7 4.0 46 165-210 3-49 (101)
386 1ijq_A LDL receptor, low-densi 97.3 0.31 1E-05 53.7 33.0 212 833-1092 10-235 (316)
387 3ei3_A DNA damage-binding prot 97.2 0.38 1.3E-05 62.6 36.5 297 785-1093 523-911 (1158)
388 3m0c_C LDL receptor, low-densi 97.2 0.39 1.3E-05 59.9 34.3 227 793-1059 402-639 (791)
389 3qqz_A Putative uncharacterize 97.2 0.27 9.1E-06 52.4 28.4 205 849-1091 20-249 (255)
390 3amr_A 3-phytase; beta-propell 97.1 0.096 3.3E-06 58.1 25.1 194 866-1093 39-261 (355)
391 2xe4_A Oligopeptidase B; hydro 97.1 0.013 4.3E-07 73.5 20.4 196 857-1091 175-394 (751)
392 3ltm_A Alpha-REP4; protein eng 97.1 0.013 4.4E-07 60.5 16.9 186 356-613 18-207 (211)
393 2xbg_A YCF48-like protein; pho 97.0 0.36 1.2E-05 53.5 29.7 107 980-1089 161-273 (327)
394 3sov_A LRP-6, low-density lipo 97.0 0.33 1.1E-05 53.6 28.3 217 832-1093 12-236 (318)
395 3kya_A Putative phosphatase; s 97.0 0.52 1.8E-05 55.1 30.7 246 815-1093 140-473 (496)
396 4a0p_A LRP6, LRP-6, low-densit 96.9 0.93 3.2E-05 55.0 34.2 223 793-1059 13-244 (628)
397 3p5b_L Low density lipoprotein 96.9 0.54 1.8E-05 53.7 30.5 219 825-1092 85-317 (400)
398 2ism_A Putative oxidoreductase 96.9 0.27 9.3E-06 55.2 27.1 73 813-887 30-115 (352)
399 2ct0_A Non-SMC element 1 homol 96.9 0.00089 3E-08 56.5 4.6 48 163-210 15-64 (74)
400 1k3i_A Galactose oxidase precu 96.9 0.03 1E-06 68.9 20.3 113 779-892 191-329 (656)
401 3ltj_A Alpharep-4; protein eng 96.8 0.027 9.3E-07 57.5 16.2 183 358-612 15-201 (201)
402 3a9g_A Putative uncharacterize 96.8 0.58 2E-05 52.5 28.6 247 813-1083 28-330 (354)
403 4hw6_A Hypothetical protein, I 96.6 0.38 1.3E-05 55.7 26.4 102 786-889 153-262 (433)
404 3ei3_A DNA damage-binding prot 96.6 1.6 5.6E-05 56.7 34.3 228 813-1084 513-756 (1158)
405 1bpo_A Protein (clathrin); cla 96.5 1.6 5.3E-05 49.6 33.5 253 795-1090 48-326 (494)
406 3amr_A 3-phytase; beta-propell 96.5 0.97 3.3E-05 50.1 26.6 198 825-1060 42-272 (355)
407 3m0c_C LDL receptor, low-densi 96.5 1.6 5.5E-05 54.4 32.0 215 832-1092 403-629 (791)
408 1vyx_A ORF K3, K3RING; zinc-bi 96.4 0.0031 1.1E-07 51.0 4.6 48 163-210 6-59 (60)
409 3tc9_A Hypothetical hydrolase; 96.4 0.088 3E-06 61.0 18.7 149 937-1093 138-299 (430)
410 2xzh_A Clathrin heavy chain 1; 96.4 1.6 5.5E-05 47.7 34.7 253 795-1090 49-327 (365)
411 1n7d_A LDL receptor, low-densi 96.4 0.012 4E-07 73.0 11.7 227 794-1060 385-622 (699)
412 1oyz_A Hypothetical protein YI 96.3 0.07 2.4E-06 57.6 16.8 222 315-609 25-250 (280)
413 3k1l_B Fancl; UBC, ring, RWD, 96.3 0.00065 2.2E-08 73.4 0.3 47 163-209 308-372 (381)
414 3grl_A General vesicular trans 96.3 0.023 7.7E-07 67.6 12.8 141 370-518 39-197 (651)
415 4a0p_A LRP6, LRP-6, low-densit 96.3 2.3 8E-05 51.5 31.2 216 831-1092 13-234 (628)
416 2vpj_A Kelch-like protein 12; 96.2 0.44 1.5E-05 51.7 22.7 227 784-1054 14-280 (301)
417 2p9w_A MAL S 1 allergenic prot 96.2 0.33 1.1E-05 53.4 20.9 159 935-1094 12-214 (334)
418 2xn4_A Kelch-like protein 2; s 96.2 0.53 1.8E-05 51.1 23.1 228 783-1054 14-278 (302)
419 3ltj_A Alpharep-4; protein eng 96.2 0.13 4.4E-06 52.4 16.8 146 315-514 16-165 (201)
420 3ii7_A Kelch-like protein 7; p 96.2 1.1 3.7E-05 48.6 25.5 236 785-1054 12-274 (306)
421 2vpj_A Kelch-like protein 12; 96.1 0.43 1.5E-05 51.7 21.7 214 833-1093 31-276 (301)
422 2xn4_A Kelch-like protein 2; s 96.1 0.85 2.9E-05 49.4 24.0 224 825-1093 18-274 (302)
423 3s94_A LRP-6, low-density lipo 96.0 1.8 6.3E-05 52.3 28.8 226 793-1059 16-250 (619)
424 3ltm_A Alpha-REP4; protein eng 96.0 0.14 4.8E-06 52.5 16.4 149 312-514 18-170 (211)
425 2jun_A Midline-1; B-BOX, TRIM, 96.0 0.0023 7.9E-08 58.0 1.9 33 162-194 2-37 (101)
426 3ii7_A Kelch-like protein 7; p 95.9 0.94 3.2E-05 49.2 23.5 223 825-1093 14-270 (306)
427 2g8s_A Glucose/sorbosone dehyd 95.9 1.5 5E-05 49.1 25.2 69 1020-1088 267-347 (353)
428 2p9w_A MAL S 1 allergenic prot 95.8 0.81 2.8E-05 50.3 21.6 213 854-1091 11-261 (334)
429 4asc_A Kelch repeat and BTB do 95.6 1.7 5.7E-05 47.4 24.1 123 955-1085 117-253 (315)
430 3sre_A PON1, serum paraoxonase 95.6 1.6 5.3E-05 48.9 23.4 126 954-1085 138-287 (355)
431 3sre_A PON1, serum paraoxonase 95.5 1.7 5.9E-05 48.5 23.7 200 831-1059 81-307 (355)
432 3ott_A Two-component system se 95.3 8.2 0.00028 47.8 35.4 261 815-1093 192-500 (758)
433 2woz_A Kelch repeat and BTB do 95.2 2.3 7.7E-05 46.4 23.5 122 956-1085 128-263 (318)
434 3s94_A LRP-6, low-density lipo 95.2 7.6 0.00026 46.9 37.3 296 785-1093 51-421 (619)
435 1zgk_A Kelch-like ECH-associat 95.1 1.3 4.4E-05 48.2 20.8 111 778-890 18-150 (308)
436 2ism_A Putative oxidoreductase 95.0 3.1 0.0001 46.4 24.0 95 779-874 36-153 (352)
437 1n7d_A LDL receptor, low-densi 94.7 0.098 3.4E-06 64.7 11.4 219 832-1092 385-611 (699)
438 4gmo_A Putative uncharacterize 94.7 0.096 3.3E-06 64.6 11.2 219 323-582 43-274 (684)
439 1zgk_A Kelch-like ECH-associat 94.7 1.1 3.7E-05 48.8 18.8 130 955-1093 137-285 (308)
440 4asc_A Kelch repeat and BTB do 94.3 3.6 0.00012 44.6 22.0 95 955-1054 165-279 (315)
441 2woz_A Kelch repeat and BTB do 94.2 5.1 0.00017 43.5 22.8 104 785-892 16-142 (318)
442 3ott_A Two-component system se 93.6 18 0.00062 44.5 38.0 285 787-1092 114-445 (758)
443 1xi4_A Clathrin heavy chain; a 93.6 2.4 8.4E-05 55.0 20.6 255 795-1088 48-324 (1630)
444 1bpo_A Protein (clathrin); cla 93.5 13 0.00043 42.3 29.2 202 877-1094 48-288 (494)
445 3kya_A Putative phosphatase; s 93.5 1.4 4.6E-05 51.6 17.0 153 937-1092 140-338 (496)
446 1oyz_A Hypothetical protein YI 93.2 2.1 7.2E-05 45.7 17.2 194 356-608 22-220 (280)
447 2uvk_A YJHT; unknown function, 92.7 8.9 0.0003 42.3 22.1 93 783-876 18-128 (357)
448 2zwa_A Leucine carboxyl methyl 92.7 5.1 0.00017 49.2 21.6 196 824-1055 399-638 (695)
449 2be1_A Serine/threonine-protei 92.6 1.2 4.2E-05 49.3 14.2 123 824-972 11-138 (339)
450 3das_A Putative oxidoreductase 92.4 16 0.00054 40.4 29.5 251 811-1083 29-326 (347)
451 2xzh_A Clathrin heavy chain 1; 92.3 15 0.00051 40.1 27.6 202 877-1094 49-289 (365)
452 3i2d_A E3 SUMO-protein ligase 91.6 0.11 3.8E-06 57.3 4.1 62 163-225 249-314 (371)
453 3pbp_A Nucleoporin NUP82; beta 91.4 7.7 0.00026 44.0 18.7 131 953-1090 39-207 (452)
454 1b3u_A Protein (protein phosph 91.3 6.8 0.00023 46.4 20.1 296 266-612 9-313 (588)
455 2be1_A Serine/threonine-protei 91.1 0.27 9.2E-06 54.6 6.7 111 946-1062 11-140 (339)
456 3a9g_A Putative uncharacterize 91.0 22 0.00075 39.3 25.5 94 780-875 35-154 (354)
457 4fdd_A Transportin-1; heat rep 90.5 32 0.0011 43.0 26.1 311 285-621 107-483 (852)
458 2vgl_B AP-2 complex subunit be 90.5 2.8 9.5E-05 50.5 15.5 256 323-607 130-417 (591)
459 2uvk_A YJHT; unknown function, 90.4 5 0.00017 44.4 16.7 65 825-890 22-99 (357)
460 4fo9_A E3 SUMO-protein ligase 89.4 0.23 7.8E-06 54.7 4.1 63 163-226 215-281 (360)
461 1weo_A Cellulose synthase, cat 89.0 0.47 1.6E-05 40.3 4.7 47 163-209 16-69 (93)
462 2vgl_B AP-2 complex subunit be 88.9 37 0.0013 40.4 23.8 73 267-346 120-192 (591)
463 1b3u_A Protein (protein phosph 88.8 7 0.00024 46.3 17.3 144 314-473 282-430 (588)
464 3nw0_A Non-structural maintena 88.6 0.33 1.1E-05 50.9 4.6 49 163-211 180-230 (238)
465 3qhy_B Beta-lactamase inhibito 88.4 25 0.00087 37.4 19.8 67 814-886 24-90 (282)
466 4gmo_A Putative uncharacterize 88.2 2.8 9.6E-05 51.4 13.3 208 267-514 34-256 (684)
467 1ibr_B P95, importin beta-1 su 87.1 29 0.00098 39.3 20.7 277 312-611 127-439 (462)
468 2g8s_A Glucose/sorbosone dehyd 86.6 43 0.0015 36.9 23.5 97 779-875 23-149 (353)
469 4fdd_A Transportin-1; heat rep 86.3 15 0.00052 46.0 19.0 95 415-517 376-472 (852)
470 1xi4_A Clathrin heavy chain; a 86.2 27 0.00092 45.6 20.4 180 911-1094 71-288 (1630)
471 1tl2_A L10, protein (tachylect 85.8 26 0.0009 36.0 16.5 99 984-1088 90-203 (236)
472 3pbp_A Nucleoporin NUP82; beta 85.0 9.3 0.00032 43.3 14.0 91 1003-1094 40-157 (452)
473 1tl2_A L10, protein (tachylect 84.4 40 0.0014 34.7 17.1 160 825-999 6-199 (236)
474 1cru_A Protein (soluble quinop 83.2 71 0.0024 36.6 26.8 61 814-874 27-98 (454)
475 1w63_A Adapter-related protein 81.6 72 0.0025 38.2 21.4 73 324-402 152-230 (618)
476 3kci_A Probable E3 ubiquitin-p 79.5 83 0.0028 35.0 31.4 153 937-1093 160-343 (389)
477 2zwa_A Leucine carboxyl methyl 79.4 40 0.0014 41.0 18.3 109 783-892 396-528 (695)
478 1te4_A Conserved protein MTH18 78.9 9.2 0.00031 35.4 9.7 55 447-512 44-98 (131)
479 2of3_A ZYG-9; multifunctional 75.0 62 0.0021 34.1 15.6 101 392-517 133-237 (266)
480 1u6g_C TIP120 protein, CAND1; 73.4 60 0.002 42.4 18.7 281 308-623 1-298 (1230)
481 2bpt_A Importin beta-1 subunit 73.1 64 0.0022 39.9 18.2 270 323-612 233-532 (861)
482 2qk2_A LP04448P; mini spindles 72.8 87 0.003 31.9 17.1 178 279-517 26-206 (242)
483 3das_A Putative oxidoreductase 72.7 49 0.0017 36.5 14.9 102 982-1084 32-159 (347)
484 2qk1_A Protein STU2; STU2P, XM 72.7 64 0.0022 33.5 15.3 181 318-517 21-221 (249)
485 2bpt_A Importin beta-1 subunit 72.1 1.4E+02 0.0049 36.7 21.1 275 325-622 422-724 (861)
486 2ko5_A Ring finger protein Z; 71.1 1.5 5.2E-05 37.7 1.6 50 163-214 28-77 (99)
487 2cs3_A Protein C14ORF4, MY039 69.5 4.4 0.00015 33.6 3.9 34 163-196 15-52 (93)
488 3mjh_B Early endosome antigen 67.5 1.5 5.2E-05 30.5 0.7 15 163-177 5-19 (34)
489 4ady_A RPN2, 26S proteasome re 65.9 1.8E+02 0.0061 36.4 19.0 179 311-529 505-692 (963)
490 1cru_A Protein (soluble quinop 65.4 1.9E+02 0.0065 32.9 21.9 36 855-890 26-61 (454)
491 1te4_A Conserved protein MTH18 65.3 4.9 0.00017 37.3 4.1 102 325-469 23-128 (131)
492 2jne_A Hypothetical protein YF 61.2 0.56 1.9E-05 40.6 -3.0 41 163-209 32-72 (101)
493 1qgr_A Protein (importin beta 60.2 2.9E+02 0.01 33.8 20.6 267 324-610 227-538 (876)
494 3s25_A Hypothetical 7-bladed b 59.8 1.8E+02 0.0063 30.9 22.6 61 821-888 23-99 (302)
495 4gq2_M Nucleoporin NUP120; bet 59.3 88 0.003 39.6 15.3 32 857-888 237-268 (950)
496 3s25_A Hypothetical 7-bladed b 59.3 1.9E+02 0.0064 30.9 27.8 105 779-892 19-144 (302)
497 2db0_A 253AA long hypothetical 59.2 65 0.0022 31.9 10.5 65 445-514 107-171 (253)
498 3b2a_A TON_1937, putative unch 59.2 1.7E+02 0.0057 30.2 16.2 172 322-518 41-220 (265)
499 2qk2_A LP04448P; mini spindles 57.6 47 0.0016 34.1 10.5 148 445-611 56-207 (242)
500 3mvd_K Regulator of chromosome 57.1 2.4E+02 0.0082 31.4 30.3 230 856-1093 75-372 (423)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.8e-36 Score=356.08 Aligned_cols=276 Identities=19% Similarity=0.281 Sum_probs=243.9
Q ss_pred hhhccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCccee
Q 001349 772 LRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHL 847 (1094)
Q Consensus 772 ~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~ 847 (1094)
|...+....+.+++.++++|+.||+|++||.. .....+.+|.+.|++++|+|+ +|++|+.||+|++||+.++ .+
T Consensus 107 h~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~--~~ 184 (410)
T 1vyh_C 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF--EC 184 (410)
T ss_dssp CSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS--CE
T ss_pred cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--ce
Confidence 44455566788889999999999999999987 466788899999999999986 9999999999999999988 78
Q ss_pred EEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCC
Q 001349 848 IQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNG 927 (1094)
Q Consensus 848 ~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g 927 (1094)
+.++.+|...|++++|+|++++|++|+.|++|++||+.++... .....+...|..+. |+|+|.
T Consensus 185 ~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~-~~~~~h~~~v~~~~-------~~~~g~--------- 247 (410)
T 1vyh_C 185 IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV-KTFTGHREWVRMVR-------PNQDGT--------- 247 (410)
T ss_dssp EECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEE-EEEECCSSCEEEEE-------ECTTSS---------
T ss_pred eEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE-EEEeCCCccEEEEE-------ECCCCC---------
Confidence 9999999999999999999999999999999999999987522 22234556666665 666665
Q ss_pred eEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCC---------------
Q 001349 928 KTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG--------------- 992 (1094)
Q Consensus 928 ~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~--------------- 992 (1094)
.+++|+.||+|++||+.++... ..+.+|...|.+++|+|+
T Consensus 248 -------------------~l~s~s~D~~v~vwd~~~~~~~------~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~ 302 (410)
T 1vyh_C 248 -------------------LIASCSNDQTVRVWVVATKECK------AELREHRHVVECISWAPESSYSSISEATGSETK 302 (410)
T ss_dssp -------------------EEEEEETTSCEEEEETTTCCEE------EEECCCSSCEEEEEECCSCGGGGGGGCCSCC--
T ss_pred -------------------EEEEEcCCCeEEEEECCCCcee------eEecCCCceEEEEEEcCcccccchhhhcccccc
Confidence 3889999999999999999877 466788999999999986
Q ss_pred -----ccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCC
Q 001349 993 -----LVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTS 1064 (1094)
Q Consensus 993 -----~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~ 1064 (1094)
+.++++++.|+ +|++||++++.++..+. |...|.+++|+|+ ++++|+.||+|++||+.+++++..+ .+|.
T Consensus 303 ~~~~~g~~l~sgs~D~-~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~-~~h~ 380 (410)
T 1vyh_C 303 KSGKPGPFLLSGSRDK-TIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL-NAHE 380 (410)
T ss_dssp -----CCEEEEEETTS-EEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE-ECCS
T ss_pred ccCCCCCEEEEEeCCC-eEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE-cCCC
Confidence 56899999997 99999999999999887 7788999999998 8999999999999999999999999 5899
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1065 GKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1065 ~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
..|++++|+|++++|++|+.||+|++|++
T Consensus 381 ~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 381 HFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp SCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred CcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 99999999999999999999999999996
No 2
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.9e-36 Score=341.18 Aligned_cols=277 Identities=19% Similarity=0.266 Sum_probs=241.2
Q ss_pred hhhccccccccc----cCcEEEEeeCCCCeEEEeCCc----ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecC
Q 001349 772 LRELRKYSPLAF----EMVKVLSNGHDSSADFWNHRE----LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGR 841 (1094)
Q Consensus 772 ~~~~~~~~~~~~----d~~~l~s~s~dg~I~vWd~~~----~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~ 841 (1094)
|...+....+.+ ++.+|++|+.|++|++|++.. ....+.+|...|.+++|+++ ++++|+.||+|++||+.
T Consensus 31 H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~ 110 (321)
T 3ow8_A 31 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE 110 (321)
T ss_dssp SSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred CCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 334444455544 466899999999999999862 33467899999999999996 99999999999999999
Q ss_pred CCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEE
Q 001349 842 GSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIK 921 (1094)
Q Consensus 842 t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~ 921 (1094)
++ +.+..+..|...+++++|+|++++|++|+.||+|++||+.+++.. .....+...+.+++ |+|+|+.
T Consensus 111 ~~--~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~-~~~~~~~~~v~~~~-------~spdg~~-- 178 (321)
T 3ow8_A 111 NG--KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKE-YSLDTRGKFILSIA-------YSPDGKY-- 178 (321)
T ss_dssp TT--EEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEE-EEEECSSSCEEEEE-------ECTTSSE--
T ss_pred CC--CEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCcee-EEecCCCceEEEEE-------ECCCCCE--
Confidence 99 788899999999999999999999999999999999999987632 22333455666666 7777764
Q ss_pred EEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEEC
Q 001349 922 VHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSL 1001 (1094)
Q Consensus 922 ~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~ 1001 (1094)
+++|+.||.|++||+++++.+ ..+.+|..+|++++|+|++.++++++.
T Consensus 179 --------------------------lasg~~dg~i~iwd~~~~~~~------~~~~~h~~~v~~l~~spd~~~l~s~s~ 226 (321)
T 3ow8_A 179 --------------------------LASGAIDGIINIFDIATGKLL------HTLEGHAMPIRSLTFSPDSQLLVTASD 226 (321)
T ss_dssp --------------------------EEEEETTSCEEEEETTTTEEE------EEECCCSSCCCEEEECTTSCEEEEECT
T ss_pred --------------------------EEEEcCCCeEEEEECCCCcEE------EEEcccCCceeEEEEcCCCCEEEEEcC
Confidence 888999999999999999877 566789999999999999999999999
Q ss_pred CCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCE
Q 001349 1002 DGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEF 1078 (1094)
Q Consensus 1002 Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~ 1078 (1094)
|+ +|++||++++.....+. |...|.+++|+|+ ++++|+.||+|++||+.+++++..+ .+|.+.|++++|+|+|++
T Consensus 227 dg-~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~-~~h~~~v~~v~~s~~g~~ 304 (321)
T 3ow8_A 227 DG-YIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF-FDHQDQVWGVKYNGNGSK 304 (321)
T ss_dssp TS-CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSE
T ss_pred CC-eEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEE-cCCCCcEEEEEECCCCCE
Confidence 96 99999999999988888 7788999999998 8999999999999999999999999 589999999999999999
Q ss_pred EEEEeCCCcEEEEeCC
Q 001349 1079 LVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1079 L~sgs~DG~I~iWdls 1094 (1094)
|++++.||+|++||+.
T Consensus 305 l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 305 IVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEEETTCCEEEEECC
T ss_pred EEEEeCCCeEEEEeCC
Confidence 9999999999999974
No 3
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=5.6e-35 Score=334.17 Aligned_cols=276 Identities=16% Similarity=0.247 Sum_probs=240.7
Q ss_pred hhhccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCc--c
Q 001349 772 LRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI--L 845 (1094)
Q Consensus 772 ~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~--~ 845 (1094)
|...+....+.+++.++++++.||+|++||.. .....+..|...|.+++|+|+ +|++|+.||+|++||+.++. .
T Consensus 54 H~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~ 133 (340)
T 1got_B 54 HLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNV 133 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSC
T ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcc
Confidence 44445566778899999999999999999986 456677889999999999996 99999999999999998652 2
Q ss_pred eeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEe
Q 001349 846 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLR 925 (1094)
Q Consensus 846 ~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~ 925 (1094)
.....+.+|.+.|.++.|++++. +++++.||+|++||+.+++.. .....|...|.++. |+|++..
T Consensus 134 ~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~-~~~~~h~~~v~~~~-------~~~~~~~------ 198 (340)
T 1got_B 134 RVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQT-TTFTGHTGDVMSLS-------LAPDTRL------ 198 (340)
T ss_dssp EEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEE-EEECCCSSCEEEEE-------ECTTSSE------
T ss_pred eeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEE-EEEcCCCCceEEEE-------ECCCCCE------
Confidence 46677889999999999998765 899999999999999997522 22334566777776 7777663
Q ss_pred CCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCE
Q 001349 926 NGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAA 1005 (1094)
Q Consensus 926 ~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~ 1005 (1094)
+++|+.||.|++||++++... ..+.+|...|++++|+|++.++++++.|| +
T Consensus 199 ----------------------l~sg~~d~~v~~wd~~~~~~~------~~~~~h~~~v~~v~~~p~~~~l~s~s~d~-~ 249 (340)
T 1got_B 199 ----------------------FVSGACDASAKLWDVREGMCR------QTFTGHESDINAICFFPNGNAFATGSDDA-T 249 (340)
T ss_dssp ----------------------EEEEETTSCEEEEETTTCSEE------EEECCCSSCEEEEEECTTSSEEEEEETTS-C
T ss_pred ----------------------EEEEeCCCcEEEEECCCCeeE------EEEcCCcCCEEEEEEcCCCCEEEEEcCCC-c
Confidence 889999999999999999877 56778999999999999999999999997 9
Q ss_pred EEEEECCCCeEEEEecCC---CCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEE
Q 001349 1006 VKMWSTSNYNMVGSLPTL---SEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLV 1080 (1094)
Q Consensus 1006 I~iwd~~~~~~~~~~~~~---~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~ 1080 (1094)
|++||+++++.+..+.+. ..|.+++|+|+ ++++|+.||.|++||+.+++.+..+ .+|.+.|++++|+|||.+|+
T Consensus 250 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~-~~h~~~v~~~~~s~dg~~l~ 328 (340)
T 1got_B 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL-AGHDNRVSCLGVTDDGMAVA 328 (340)
T ss_dssp EEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECTTSSCEE
T ss_pred EEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEe-ecCCCcEEEEEEcCCCCEEE
Confidence 999999999988887754 47999999998 8999999999999999999999998 59999999999999999999
Q ss_pred EEeCCCcEEEEe
Q 001349 1081 IGTSDGRIQAWG 1092 (1094)
Q Consensus 1081 sgs~DG~I~iWd 1092 (1094)
+|+.||+|++||
T Consensus 329 s~s~D~~i~iWd 340 (340)
T 1got_B 329 TGSWDSFLKIWN 340 (340)
T ss_dssp EEETTSCEEEEC
T ss_pred EEcCCccEEecC
Confidence 999999999997
No 4
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.5e-35 Score=337.77 Aligned_cols=277 Identities=14% Similarity=0.128 Sum_probs=222.7
Q ss_pred ccccccccccCcEEEEeeCCCCeEEEeCC-------------cceeecccCCCcEEEEEEeCC-EEEEEECCCeEEEEec
Q 001349 775 LRKYSPLAFEMVKVLSNGHDSSADFWNHR-------------ELVHVDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTG 840 (1094)
Q Consensus 775 ~~~~~~~~~d~~~l~s~s~dg~I~vWd~~-------------~~~~~~~~h~~~V~~l~fspd-~LaSgs~Dg~I~vWd~ 840 (1094)
.+....|++||..+++++ |+++++||.. ........|...|.+++|+|+ .|++|+.||+|+|||+
T Consensus 32 ~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~ 110 (344)
T 4gqb_B 32 QLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVELWEL 110 (344)
T ss_dssp EEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEETTSEEEEEEE
T ss_pred CEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEEEEECCCEEEEEec
Confidence 345667888999998877 7888888742 111222345778999999997 9999999999999999
Q ss_pred CCCcceeE--EEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCC
Q 001349 841 RGSILHLI--QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGA 918 (1094)
Q Consensus 841 ~t~~~~~~--~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~ 918 (1094)
.+++.... ....+|.+.|++++|+|+|++|++|+.||+|++||+.+++. ......|...|.++. |+|++.
T Consensus 111 ~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~-~~~~~~h~~~V~~~~-------~~~~~~ 182 (344)
T 4gqb_B 111 DENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVV-LSSYRAHAAQVTCVA-------ASPHKD 182 (344)
T ss_dssp CTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEE-------ECSSCT
T ss_pred cCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE-EEEEcCcCCceEEEE-------ecCCCC
Confidence 98743222 33558999999999999999999999999999999999852 222334667777776 777665
Q ss_pred eEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeC-CccEEE
Q 001349 919 GIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN-GLVYTA 997 (1094)
Q Consensus 919 ~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~-~~~~la 997 (1094)
. .+++|+.||+|++||+++++....+. ...|...+.+++|+| ++.+++
T Consensus 183 ~---------------------------~l~s~s~D~~v~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~p~~~~~l~ 231 (344)
T 4gqb_B 183 S---------------------------VFLSCSEDNRILLWDTRCPKPASQIG----CSAPGYLPTSLAWHPQQSEVFV 231 (344)
T ss_dssp T---------------------------EEEEEETTSCEEEEETTSSSCEEECC--------CCCEEEEEECSSCTTEEE
T ss_pred C---------------------------ceeeeccccccccccccccceeeeee----cceeeccceeeeecCCCCcceE
Confidence 3 37899999999999999998774322 234566799999997 567889
Q ss_pred EEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC---EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEc
Q 001349 998 STSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALD 1073 (1094)
Q Consensus 998 s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~S 1073 (1094)
+++.|| +|++||+++++++.++. |...|++++|+|+ ++++|+.||+|+|||+.+++++. + .+|.+.|++++|+
T Consensus 232 sg~~dg-~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~-~~H~~~V~~v~~s 308 (344)
T 4gqb_B 232 FGDENG-TVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-S-QAHRDFVRDATWS 308 (344)
T ss_dssp EEETTS-EEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-E-CCCSSCEEEEEEC
T ss_pred EeccCC-cEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-E-cCCCCCEEEEEEe
Confidence 999886 99999999999999888 7889999999987 68999999999999999998654 4 4899999999999
Q ss_pred CCCC-EEEEEeCCCcEEEEeCC
Q 001349 1074 DNEE-FLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1074 pdg~-~L~sgs~DG~I~iWdls 1094 (1094)
|+++ +|++|+.||+|++|++.
T Consensus 309 p~~~~llas~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 309 PLNHSLLTTVGWDHQVVHHVVP 330 (344)
T ss_dssp SSSTTEEEEEETTSCEEEEECC
T ss_pred CCCCeEEEEEcCCCeEEEEECC
Confidence 9986 57799999999999973
No 5
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=7.8e-35 Score=360.36 Aligned_cols=306 Identities=16% Similarity=0.241 Sum_probs=250.5
Q ss_pred hhhccccccccccCc-EEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcce
Q 001349 772 LRELRKYSPLAFEMV-KVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILH 846 (1094)
Q Consensus 772 ~~~~~~~~~~~~d~~-~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~ 846 (1094)
|...+....|.+++. .+++++.|++|++||.. .....+.+|.+.|++++|+|+ +|++|+.||+|++||+.++ .
T Consensus 146 h~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g--~ 223 (611)
T 1nr0_A 146 QARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG--T 223 (611)
T ss_dssp CSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--C
T ss_pred CCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCC--c
Confidence 444455666777776 69999999999999987 456678899999999999997 9999999999999999988 6
Q ss_pred eEEEec-------ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEE--------------------------
Q 001349 847 LIQQIR-------EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQ-------------------------- 893 (1094)
Q Consensus 847 ~~~~l~-------~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~-------------------------- 893 (1094)
++..+. +|.+.|++++|+|+|++|+|++.|++|++||+.+++.....
T Consensus 224 ~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d 303 (611)
T 1nr0_A 224 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISAN 303 (611)
T ss_dssp EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETT
T ss_pred EeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCC
Confidence 777774 79999999999999999999999999999999987522111
Q ss_pred ----------------ecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCC---------------------
Q 001349 894 ----------------VHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSK--------------------- 936 (1094)
Q Consensus 894 ----------------~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~--------------------- 936 (1094)
...|...|.+++ |+|+|+.+++++.|+.+++|+...
T Consensus 304 ~~i~~~~~~~~~~~~~~~gh~~~v~~l~-------~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s 376 (611)
T 1nr0_A 304 GFINFVNPELGSIDQVRYGHNKAITALS-------SSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 376 (611)
T ss_dssp CCEEEEETTTTEEEEEECCCSSCEEEEE-------ECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEEC
T ss_pred CcEEEEeCCCCCcceEEcCCCCCEEEEE-------EeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEEC
Confidence 113445555555 899999999999999998887321
Q ss_pred -------------------------------------------------------------------------CceEEEE
Q 001349 937 -------------------------------------------------------------------------YPKCLAL 943 (1094)
Q Consensus 937 -------------------------------------------------------------------------~v~~l~~ 943 (1094)
.+.+++|
T Consensus 377 ~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~ 456 (611)
T 1nr0_A 377 SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVAL 456 (611)
T ss_dssp TTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEE
T ss_pred CCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEE
Confidence 1235556
Q ss_pred eC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCC-CeEEEE-
Q 001349 944 VQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSN-YNMVGS- 1019 (1094)
Q Consensus 944 s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~-~~~~~~- 1019 (1094)
++ ..+++|+.|++|++||+.++..... .. .+|...|++++|+|++.++++++.|+ +|++||+.+ ++....
T Consensus 457 spdg~~lasgs~D~~v~lwd~~~~~~~~~----~~-~~h~~~v~~v~fspdg~~las~s~d~-~v~~w~~~~~~~~~~~~ 530 (611)
T 1nr0_A 457 SNDKQFVAVGGQDSKVHVYKLSGASVSEV----KT-IVHPAEITSVAFSNNGAFLVATDQSR-KVIPYSVANNFELAHTN 530 (611)
T ss_dssp CTTSCEEEEEETTSEEEEEEEETTEEEEE----EE-EECSSCEEEEEECTTSSEEEEEETTS-CEEEEEGGGTTEESCCC
T ss_pred eCCCCEEEEeCCCCeEEEEEccCCceeee----ec-cCCCCceEEEEECCCCCEEEEEcCCC-CEEEEEcCCCCceeeee
Confidence 54 3588888888899998876643211 22 57889999999999999999999996 999999987 666544
Q ss_pred -ec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCc-EE-EEecccC-CcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1020 -LP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQI-RI-ETLQTGT-SGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1020 -~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~-~~-~~l~~~h-~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
+. |...|.+++|+|| +|++|+.|++|++||+.++. .+ ..+ .+| .+.|++++|+||++ |++++.||+|++|+
T Consensus 531 ~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~-~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~ 608 (611)
T 1nr0_A 531 SWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK-GAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWN 608 (611)
T ss_dssp CCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEET-TSSTTSCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred eeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhh-ccCcccCeeEEEEcCCCE-EEEecCCCCEEEEe
Confidence 33 7889999999999 89999999999999998875 33 444 688 88999999999998 99999999999999
Q ss_pred CC
Q 001349 1093 LS 1094 (1094)
Q Consensus 1093 ls 1094 (1094)
+.
T Consensus 609 ~~ 610 (611)
T 1nr0_A 609 VP 610 (611)
T ss_dssp CC
T ss_pred cc
Confidence 74
No 6
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.9e-34 Score=356.89 Aligned_cols=310 Identities=17% Similarity=0.200 Sum_probs=257.9
Q ss_pred ccccccccccCcEEEEeeCC----CCeEEEeCCcceeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCccee
Q 001349 775 LRKYSPLAFEMVKVLSNGHD----SSADFWNHRELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHL 847 (1094)
Q Consensus 775 ~~~~~~~~~d~~~l~s~s~d----g~I~vWd~~~~~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~ 847 (1094)
.+....|++++.++++++.+ +.|++||.......+.+|.+.|++++|+|+ .|++|+.|++|++||..++ ++
T Consensus 105 ~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~--~~ 182 (611)
T 1nr0_A 105 PVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF--KF 182 (611)
T ss_dssp CEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB--EE
T ss_pred ceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCC--eE
Confidence 44567788899999998875 478889877777788999999999999996 6999999999999999887 78
Q ss_pred EEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEec------ccCccceeeeecCceEEEeeCCCeEE
Q 001349 848 IQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVH------DIKDQIQNLAVSNSILCFIPQGAGIK 921 (1094)
Q Consensus 848 ~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~------~~~~~V~~v~~~~~~~~fspdg~~l~ 921 (1094)
..++.+|.+.|++++|+|||++|++|+.|++|++||+.+++....... .|...|.+++ |+|+|+.++
T Consensus 183 ~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~-------~spdg~~l~ 255 (611)
T 1nr0_A 183 KSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLT-------WSPDGTKIA 255 (611)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEE-------ECTTSSEEE
T ss_pred eeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEE-------ECCCCCEEE
Confidence 889999999999999999999999999999999999998863322211 5778888888 999999999
Q ss_pred EEEeCCeEEEEcCC-------------------------------------------------------CCceEEEEeC-
Q 001349 922 VHLRNGKTKLLNSS-------------------------------------------------------KYPKCLALVQ- 945 (1094)
Q Consensus 922 ~~~~~g~i~l~~~~-------------------------------------------------------~~v~~l~~s~- 945 (1094)
+++.|+++++|+.. ..|.+++|++
T Consensus 256 s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spd 335 (611)
T 1nr0_A 256 SASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSAD 335 (611)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred EEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCC
Confidence 99999999999742 2467788875
Q ss_pred -CEEEEEEcCCeEEEEECCCCceeEEecc-c-------------------------------------------------
Q 001349 946 -GKVYCGCQDGAIQEIDLATGTFATIQTG-H------------------------------------------------- 974 (1094)
Q Consensus 946 -~~l~sgs~Dg~I~iwDl~~~~~~~~~~~-~------------------------------------------------- 974 (1094)
..+++|+.|++|++||+.++.....+.. +
T Consensus 336 g~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~ 415 (611)
T 1nr0_A 336 GKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPL 415 (611)
T ss_dssp SSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEE
T ss_pred CCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCc
Confidence 4699999999999999987765332100 0
Q ss_pred --------------------------eeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeE--EEEecCCCCE
Q 001349 975 --------------------------RKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNM--VGSLPTLSEV 1026 (1094)
Q Consensus 975 --------------------------~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~--~~~~~~~~~v 1026 (1094)
.....|...+.+++|+|++.++++++.|+ +|++||+.++.. .....|...|
T Consensus 416 ~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~-~v~lwd~~~~~~~~~~~~~h~~~v 494 (611)
T 1nr0_A 416 GLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDS-KVHVYKLSGASVSEVKTIVHPAEI 494 (611)
T ss_dssp EEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTS-EEEEEEEETTEEEEEEEEECSSCE
T ss_pred EEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCC-eEEEEEccCCceeeeeccCCCCce
Confidence 00001345678999999999999999997 999999987654 3444588999
Q ss_pred EEEEEeCC--EEEEEEcCCeEEEEECCC-CcEEEE-ecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1027 RAMVVSSE--LVYLGCKGGTVEIWDQKR-QIRIET-LQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1027 ~~l~~spd--~l~sgs~dg~I~vwd~~t-~~~~~~-l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
++++|+|| ++++++.|++|++||+.+ ++.... ...+|.+.|++++|+|||++|++|+.||+|++||+.
T Consensus 495 ~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~ 566 (611)
T 1nr0_A 495 TSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMN 566 (611)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECC
Confidence 99999999 899999999999999987 655544 223599999999999999999999999999999973
No 7
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=5.6e-35 Score=336.76 Aligned_cols=282 Identities=15% Similarity=0.133 Sum_probs=228.7
Q ss_pred HhhhccccccccccCcEEEEeeC------CCCeEEEeCCc------ceeecccCCCcEEEEEEeCC-EEEEEECCCeEEE
Q 001349 771 GLRELRKYSPLAFEMVKVLSNGH------DSSADFWNHRE------LVHVDSSENGKVLSIACFRD-KIFSGHSDGTIKV 837 (1094)
Q Consensus 771 ~~~~~~~~~~~~~d~~~l~s~s~------dg~I~vWd~~~------~~~~~~~h~~~V~~l~fspd-~LaSgs~Dg~I~v 837 (1094)
.|...+....|++||.+|++++. |+.|++|+... ......+|.+.|++++|+|+ .+++++.||+|+|
T Consensus 40 ~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~l 119 (357)
T 4g56_B 40 CMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVEL 119 (357)
T ss_dssp CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEE
T ss_pred cccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEE
Confidence 45566778889999999999997 67788888752 23344578999999999997 8889999999999
Q ss_pred EecCCCcceeE--EEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEee
Q 001349 838 WTGRGSILHLI--QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIP 915 (1094)
Q Consensus 838 Wd~~t~~~~~~--~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fsp 915 (1094)
||+.++..... ....+|.+.|++++|+|+|++|++|+.||+|++||+.+++.. .....+...|.+++ |+|
T Consensus 120 Wd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~-~~~~~h~~~v~~v~-------~s~ 191 (357)
T 4g56_B 120 WEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVL-KSYNAHSSEVNCVA-------ACP 191 (357)
T ss_dssp C--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEE-EEECCCSSCEEEEE-------ECT
T ss_pred eeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEE-EEEcCCCCCEEEEE-------Ecc
Confidence 99988732222 334589999999999999999999999999999999997522 22234566677766 666
Q ss_pred CCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCC-cc
Q 001349 916 QGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG-LV 994 (1094)
Q Consensus 916 dg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~-~~ 994 (1094)
++.. .+++++.||.|++||+++++.... .....|...+++++|+|+ +.
T Consensus 192 ~~~~---------------------------~~~s~~~dg~v~~wd~~~~~~~~~----~~~~~~~~~v~~v~~sp~~~~ 240 (357)
T 4g56_B 192 GKDT---------------------------IFLSCGEDGRILLWDTRKPKPATR----IDFCASDTIPTSVTWHPEKDD 240 (357)
T ss_dssp TCSS---------------------------CEEEEETTSCEEECCTTSSSCBCB----CCCTTCCSCEEEEEECTTSTT
T ss_pred CCCc---------------------------eeeeeccCCceEEEECCCCceeee----eeeccccccccchhhhhcccc
Confidence 6542 378899999999999999886632 233456788999999986 56
Q ss_pred EEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC---EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEE
Q 001349 995 YTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCM 1070 (1094)
Q Consensus 995 ~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l 1070 (1094)
++++++.|+ .|++||+++++++..+. |...|++++|+|+ +|++|+.||+|+|||+.+++.+..+ +|.+.|+++
T Consensus 241 ~la~g~~d~-~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~--~H~~~V~~v 317 (357)
T 4g56_B 241 TFACGDETG-NVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL--SHRDFVTGV 317 (357)
T ss_dssp EEEEEESSS-CEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC--CCSSCEEEE
T ss_pred eEEEeeccc-ceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC--CCCCCEEEE
Confidence 888888886 99999999999998888 6788999999986 6899999999999999999888766 799999999
Q ss_pred EEcC-CCCEEEEEeCCCcEEEEeCC
Q 001349 1071 ALDD-NEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1071 ~~Sp-dg~~L~sgs~DG~I~iWdls 1094 (1094)
+|+| |+++|+||+.||+|++|++.
T Consensus 318 afsP~d~~~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 318 AWSPLDHSKFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp EECSSSTTEEEEEETTSCEEEEECC
T ss_pred EEeCCCCCEEEEEcCCCeEEEEECC
Confidence 9998 89999999999999999974
No 8
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=9.3e-34 Score=321.10 Aligned_cols=272 Identities=17% Similarity=0.282 Sum_probs=237.0
Q ss_pred eeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcc---eeEEEecccCCCeEEEEEecCCCEEEEEeCCCcE
Q 001349 806 VHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSIL---HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTA 879 (1094)
Q Consensus 806 ~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~---~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI 879 (1094)
...+.+|.+.|++++|+|+ +|+||+.||+|++||+.+... .++..+.+|...|++++|+|+|++|++|+.|++|
T Consensus 10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v 89 (319)
T 3frx_A 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL 89 (319)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEE
Confidence 4567899999999999973 899999999999999875321 4577899999999999999999999999999999
Q ss_pred EEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC-----------CCCceEEEEeCC--
Q 001349 880 RVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS-----------SKYPKCLALVQG-- 946 (1094)
Q Consensus 880 ~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~-----------~~~v~~l~~s~~-- 946 (1094)
++||+.+++. ......|...|.++. |+|++..+++++.|+.+++|+. ...+.++.+.+.
T Consensus 90 ~~wd~~~~~~-~~~~~~h~~~v~~~~-------~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~ 161 (319)
T 3frx_A 90 RLWDVATGET-YQRFVGHKSDVMSVD-------IDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEK 161 (319)
T ss_dssp EEEETTTTEE-EEEEECCSSCEEEEE-------ECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC--
T ss_pred EEEECCCCCe-eEEEccCCCcEEEEE-------EcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCC
Confidence 9999999862 233345788899988 9999999999999999999984 356788888753
Q ss_pred ------EEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEe
Q 001349 947 ------KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSL 1020 (1094)
Q Consensus 947 ------~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~ 1020 (1094)
.+++|+.|+.|++||+.+++.. ..+.+|...|++++|+|++.++++++.|| +|++||+.+++.+..+
T Consensus 162 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~------~~~~~h~~~v~~~~~sp~g~~l~s~~~dg-~i~iwd~~~~~~~~~~ 234 (319)
T 3frx_A 162 ADDDSVTIISAGNDKMVKAWNLNQFQIE------ADFIGHNSNINTLTASPDGTLIASAGKDG-EIMLWNLAAKKAMYTL 234 (319)
T ss_dssp ----CCEEEEEETTSCEEEEETTTTEEE------EEECCCCSCEEEEEECTTSSEEEEEETTC-EEEEEETTTTEEEEEE
T ss_pred CCCCccEEEEEeCCCEEEEEECCcchhh------eeecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEECCCCcEEEEe
Confidence 6999999999999999988766 56778999999999999999999999997 9999999999999999
Q ss_pred cCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecc-------cCCcceEEEEEcCCCCEEEEEeCCCcEEEE
Q 001349 1021 PTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQT-------GTSGKVQCMALDDNEEFLVIGTSDGRIQAW 1091 (1094)
Q Consensus 1021 ~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~-------~h~~~I~~l~~Spdg~~L~sgs~DG~I~iW 1091 (1094)
.++..|.+++|+|+ ++++++ ++.+++|++..+..+..+.. .|...+.+++|+|||++|++|+.||+|++|
T Consensus 235 ~~~~~v~~~~~sp~~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vW 313 (319)
T 3frx_A 235 SAQDEVFSLAFSPNRYWLAAAT-ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313 (319)
T ss_dssp ECCSCEEEEEECSSSSEEEEEE-TTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred cCCCcEEEEEEcCCCCEEEEEc-CCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEE
Confidence 98899999999999 566555 55699999998887776632 245679999999999999999999999999
Q ss_pred eC
Q 001349 1092 GL 1093 (1094)
Q Consensus 1092 dl 1093 (1094)
|+
T Consensus 314 d~ 315 (319)
T 3frx_A 314 QV 315 (319)
T ss_dssp EE
T ss_pred EE
Confidence 97
No 9
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.4e-33 Score=345.53 Aligned_cols=293 Identities=23% Similarity=0.387 Sum_probs=258.5
Q ss_pred ccccccccCcEEEEeeCCCCeEEEeCC-cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecc
Q 001349 777 KYSPLAFEMVKVLSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIRE 853 (1094)
Q Consensus 777 ~~~~~~~d~~~l~s~s~dg~I~vWd~~-~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~ 853 (1094)
....+.+++..+++++.|+.|++|+.. .....+.+|.+.|.+++|+|+ ++++++.||+|++||..+. .+..+.+
T Consensus 266 ~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~---~~~~~~~ 342 (577)
T 2ymu_A 266 NGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ---HLQTLTG 342 (577)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC---EEEEECC
T ss_pred EEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC---eeEEEeC
Confidence 345677889999999999999999987 556778899999999999997 9999999999999998765 5677889
Q ss_pred cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEc
Q 001349 854 HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN 933 (1094)
Q Consensus 854 H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~ 933 (1094)
|...|++++|+|+|++|++|+.||+|++||....... ....+...|.+++ |+|+|+.+++++.++.+++|+
T Consensus 343 ~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~--~~~~~~~~v~~~~-------~s~dg~~l~~~~~d~~v~~~~ 413 (577)
T 2ymu_A 343 HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ--TLTGHSSSVRGVA-------FSPDGQTIASASDDKTVKLWN 413 (577)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEE--EEECCSSCEEEEE-------ECTTSSCEEEEETTSEEEEEC
T ss_pred CCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEE--EecCCCCCeEEEE-------ECCCCCEEEEEeCCCEEEEEe
Confidence 9999999999999999999999999999997654222 2334677888887 999999999999999999997
Q ss_pred C-----------CCCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEE
Q 001349 934 S-----------SKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTS 1000 (1094)
Q Consensus 934 ~-----------~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s 1000 (1094)
. ...|.+++|++ ..+++++.|+.|++||.. ++.. ..+.+|...|++++|+|++.++++++
T Consensus 414 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~~------~~~~~~~~~v~~~~~spd~~~las~~ 486 (577)
T 2ymu_A 414 RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQLL------QTLTGHSSSVRGVAFSPDGQTIASAS 486 (577)
T ss_dssp TTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-SCEE------EEEECCSSCEEEEEECTTSCEEEEEE
T ss_pred CCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC-CCEE------EEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 4 45688999986 469999999999999964 5544 56678999999999999999999999
Q ss_pred CCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCC
Q 001349 1001 LDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEE 1077 (1094)
Q Consensus 1001 ~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~ 1077 (1094)
.|+ +|++||. +++++..+. |...|++++|+|| +|++++.||.|++||. +++++..+ .+|.+.|++++|+|||+
T Consensus 487 ~d~-~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~-~~h~~~v~~~~fs~dg~ 562 (577)
T 2ymu_A 487 DDK-TVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL-TGHSSSVWGVAFSPDGQ 562 (577)
T ss_dssp TTS-EEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEE-ECCSSCEEEEEECTTSS
T ss_pred CCC-EEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEE-cCCCCCEEEEEEcCCCC
Confidence 986 9999995 677788877 7889999999998 8999999999999996 67888888 59999999999999999
Q ss_pred EEEEEeCCCcEEEEe
Q 001349 1078 FLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1078 ~L~sgs~DG~I~iWd 1092 (1094)
+|+|++.||+|++||
T Consensus 563 ~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 563 TIASASSDKTVKLWN 577 (577)
T ss_dssp CEEEEETTSCEEEEC
T ss_pred EEEEEeCCCEEEEeC
Confidence 999999999999997
No 10
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5.3e-34 Score=326.84 Aligned_cols=279 Identities=17% Similarity=0.287 Sum_probs=229.6
Q ss_pred cccccccccCcEEEEeeCCCCeEEEeCCcc-----eeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeE
Q 001349 776 RKYSPLAFEMVKVLSNGHDSSADFWNHREL-----VHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLI 848 (1094)
Q Consensus 776 ~~~~~~~~d~~~l~s~s~dg~I~vWd~~~~-----~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~ 848 (1094)
+....+++++.+|++|+.|++|++||.... .....+|.+.|.+++|+|+ +|++|+.||+|++||..++...++
T Consensus 19 v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~ 98 (345)
T 3fm0_A 19 CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECV 98 (345)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEE
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEE
Confidence 345678889999999999999999998732 1234689999999999996 999999999999999988766678
Q ss_pred EEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc-eEEEE-ecccCccceeeeecCceEEEeeCCCeEEEEEeC
Q 001349 849 QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE-IHCVQ-VHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRN 926 (1094)
Q Consensus 849 ~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~-~~~~~-~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~ 926 (1094)
..+.+|.+.|++++|+|+|++|++|+.|++|++||+.++. ..+.. ...+...|.++. |+|++..
T Consensus 99 ~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~-------~~p~~~~------- 164 (345)
T 3fm0_A 99 TTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVV-------WHPSQEL------- 164 (345)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEE-------ECSSSSC-------
T ss_pred EEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEE-------ECCCCCE-------
Confidence 8999999999999999999999999999999999998764 22222 234556666666 6776653
Q ss_pred CeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEE
Q 001349 927 GKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAV 1006 (1094)
Q Consensus 927 g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I 1006 (1094)
+++|+.|+.|++||..++..... ..+.+|...|++++|+|++.++++++.|+ +|
T Consensus 165 ---------------------l~s~s~d~~i~~w~~~~~~~~~~----~~~~~h~~~v~~l~~sp~g~~l~s~s~D~-~v 218 (345)
T 3fm0_A 165 ---------------------LASASYDDTVKLYREEEDDWVCC----ATLEGHESTVWSLAFDPSGQRLASCSDDR-TV 218 (345)
T ss_dssp ---------------------EEEEETTSCEEEEEEETTEEEEE----EEECCCSSCEEEEEECTTSSEEEEEETTS-CE
T ss_pred ---------------------EEEEeCCCcEEEEEecCCCEEEE----EEecCCCCceEEEEECCCCCEEEEEeCCC-eE
Confidence 88999999999999988764322 46778999999999999999999999997 99
Q ss_pred EEEECCC---------------CeEEEEec--CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCc--------EEEEe
Q 001349 1007 KMWSTSN---------------YNMVGSLP--TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQI--------RIETL 1059 (1094)
Q Consensus 1007 ~iwd~~~---------------~~~~~~~~--~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~--------~~~~l 1059 (1094)
++||... ..++..+. |...|.+++|+++ .+++++.|+.|++|+...+. .....
T Consensus 219 ~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~ 298 (345)
T 3fm0_A 219 RIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHL 298 (345)
T ss_dssp EEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEE
T ss_pred EEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeee
Confidence 9999632 12344444 6778999999998 89999999999999986542 12223
Q ss_pred cccCCcceEEEEEcCCC-CEEEEEeCCCcEEEEeCC
Q 001349 1060 QTGTSGKVQCMALDDNE-EFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1060 ~~~h~~~I~~l~~Spdg-~~L~sgs~DG~I~iWdls 1094 (1094)
..+|.+.|++++|+|++ .+|++|+.||+|++|++.
T Consensus 299 ~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~ 334 (345)
T 3fm0_A 299 HQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQ 334 (345)
T ss_dssp TTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEEC
T ss_pred cccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEec
Confidence 35899999999999998 599999999999999963
No 11
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=8.3e-34 Score=319.13 Aligned_cols=278 Identities=19% Similarity=0.254 Sum_probs=234.4
Q ss_pred hhhccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCccee
Q 001349 772 LRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHL 847 (1094)
Q Consensus 772 ~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~ 847 (1094)
|...+....|++++.++++++.||+|++||.. .....+..|..+|.+++|+|+ +|++|+.||+|++||+.++ ..
T Consensus 12 h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~--~~ 89 (304)
T 2ynn_A 12 RSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG--EK 89 (304)
T ss_dssp ECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC--CE
T ss_pred CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCC--cE
Confidence 33445567788999999999999999999997 345677889999999999996 9999999999999999999 78
Q ss_pred EEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCC
Q 001349 848 IQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNG 927 (1094)
Q Consensus 848 ~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g 927 (1094)
+..+.+|.+.|++++|+|++++|++|+.||+|++||+.++.........|...|.+++ |+|++.
T Consensus 90 ~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~-------~~p~~~--------- 153 (304)
T 2ynn_A 90 VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA-------FNPKDP--------- 153 (304)
T ss_dssp EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEE-------ECTTCT---------
T ss_pred EEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEE-------ECCCCC---------
Confidence 8999999999999999999999999999999999999886433233334555666665 555321
Q ss_pred eEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeC--CccEEEEEECCCCE
Q 001349 928 KTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN--GLVYTASTSLDGAA 1005 (1094)
Q Consensus 928 ~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~--~~~~las~s~Dg~~ 1005 (1094)
..+++|+.||+|++||++++..... ...+|...+..+.|++ ++.++++++.|+ +
T Consensus 154 ------------------~~l~sgs~D~~v~iwd~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~-~ 209 (304)
T 2ynn_A 154 ------------------STFASGCLDRTVKVWSLGQSTPNFT-----LTTGQERGVNYVDYYPLPDKPYMITASDDL-T 209 (304)
T ss_dssp ------------------TEEEEEETTSEEEEEETTCSSCSEE-----EECCCTTCEEEEEECCSTTCCEEEEEETTS-E
T ss_pred ------------------CEEEEEeCCCeEEEEECCCCCccce-----eccCCcCcEEEEEEEEcCCCCEEEEEcCCC-e
Confidence 2489999999999999988765532 2245667899999975 778999999997 9
Q ss_pred EEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCC--EEE
Q 001349 1006 VKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEE--FLV 1080 (1094)
Q Consensus 1006 I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~--~L~ 1080 (1094)
|++||+++++++.++. |...|.+++|+|+ ++++|+.||+|++||..+++.+..+ ..|...+++++|+|++. +++
T Consensus 210 i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a 288 (304)
T 2ynn_A 210 IKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL-NVGLERSWCIATHPTGRKNYIA 288 (304)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE-CCSSSSEEEEEECTTCGGGCEE
T ss_pred EEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeec-cCCCccEEEEEECCCCCceEEE
Confidence 9999999999999988 7789999999998 8999999999999999999999999 47888999999999885 577
Q ss_pred EEeCCCcEEEEeC
Q 001349 1081 IGTSDGRIQAWGL 1093 (1094)
Q Consensus 1081 sgs~DG~I~iWdl 1093 (1094)
+|+.|| +.+|++
T Consensus 289 sg~~~g-~~~~~~ 300 (304)
T 2ynn_A 289 SGFDNG-FTVLSL 300 (304)
T ss_dssp EEETTE-EEEEEC
T ss_pred EecCCc-eEEEEe
Confidence 777665 667765
No 12
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.5e-33 Score=324.50 Aligned_cols=271 Identities=18% Similarity=0.262 Sum_probs=238.9
Q ss_pred ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 001349 805 LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVW 882 (1094)
Q Consensus 805 ~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vW 882 (1094)
....+.+|.+.|++++|+|+ +|+||+.||+|+|||..++ .....+..|...|.+++|+|+|.++++|+.|+++++|
T Consensus 56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~--~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTT--NKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVY 133 (354)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--CEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEE
T ss_pred EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCC--CcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEE
Confidence 34677899999999999997 9999999999999999988 6778888899999999999999999999999999999
Q ss_pred ECCCCc-----eEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC------------CCCceEEEEeC
Q 001349 883 SIGNEE-----IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS------------SKYPKCLALVQ 945 (1094)
Q Consensus 883 di~~~~-----~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~------------~~~v~~l~~s~ 945 (1094)
++.... ........|...|.++. |+|++..+++++.|+.+++|+. ...|.++.+.+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~-------~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~ 206 (354)
T 2pbi_B 134 PLTFDKNENMAAKKKSVAMHTNYLSACS-------FTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAP 206 (354)
T ss_dssp ECCCCTTCCSGGGCEEEEECSSCEEEEE-------ECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECC
T ss_pred EEeccccccccccceeeeccCCcEEEEE-------EeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEe
Confidence 986542 11122234567777777 9999999999999999999984 34677888864
Q ss_pred ----CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec
Q 001349 946 ----GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP 1021 (1094)
Q Consensus 946 ----~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~ 1021 (1094)
..+++|+.||.|++||+++++.. ..+.+|...|++++|+|++.++++++.|+ +|++||++++..+..+.
T Consensus 207 ~~~g~~l~sgs~Dg~v~~wd~~~~~~~------~~~~~h~~~v~~v~~~p~~~~l~s~s~D~-~v~lwd~~~~~~~~~~~ 279 (354)
T 2pbi_B 207 SETGNTFVSGGCDKKAMVWDMRSGQCV------QAFETHESDVNSVRYYPSGDAFASGSDDA-TCRLYDLRADREVAIYS 279 (354)
T ss_dssp CSSCCEEEEEETTSCEEEEETTTCCEE------EEECCCSSCEEEEEECTTSSEEEEEETTS-CEEEEETTTTEEEEEEC
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCcEE------EEecCCCCCeEEEEEeCCCCEEEEEeCCC-eEEEEECCCCcEEEEEc
Confidence 47999999999999999999887 56678999999999999999999999997 99999999998877776
Q ss_pred C---CCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1022 T---LSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1022 ~---~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
+ ...+.+++|+|+ ++++|+.|++|++||+.+++.+..+ .+|.+.|++++|+|||++|++|+.||+|++|+
T Consensus 280 ~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l-~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 280 KESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSIL-FGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEE-CCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEE-ECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 3 347899999998 8999999999999999999999888 58999999999999999999999999999996
No 13
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.5e-33 Score=318.02 Aligned_cols=275 Identities=21% Similarity=0.315 Sum_probs=237.9
Q ss_pred ceeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCc---ceeEEEecccCCCeEEEEEecCCCEEEEEeCCCc
Q 001349 805 LVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSI---LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKT 878 (1094)
Q Consensus 805 ~~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~---~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~Dgt 878 (1094)
+..++.||.+.|++|+|+|+ +|+||+.||+|+|||+.+.. ..+...+.+|...|++++|+|+|++|++|+.|+.
T Consensus 30 l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~ 109 (340)
T 4aow_A 30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGT 109 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccccc
Confidence 45578999999999999984 89999999999999987653 2457788999999999999999999999999999
Q ss_pred EEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC-------------CCCceEEEEeC
Q 001349 879 ARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS-------------SKYPKCLALVQ 945 (1094)
Q Consensus 879 I~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~-------------~~~v~~l~~s~ 945 (1094)
|++|+...+..... .......+.... +++++..+++++.++.+++|+. ...+.++.+.+
T Consensus 110 i~~~~~~~~~~~~~-~~~~~~~~~~~~-------~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~ 181 (340)
T 4aow_A 110 LRLWDLTTGTTTRR-FVGHTKDVLSVA-------FSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSP 181 (340)
T ss_dssp EEEEETTTTEEEEE-EECCSSCEEEEE-------ECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECS
T ss_pred ceEEeecccceeee-ecCCCCceeEEE-------EeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEcc
Confidence 99999998753332 223344444444 8899999999999999999984 34577888764
Q ss_pred ----CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec
Q 001349 946 ----GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP 1021 (1094)
Q Consensus 946 ----~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~ 1021 (1094)
..+++++.|+.|++||+.+++.. ..+.+|..+|++++|+|++.++++++.|+ .|++||+++++.+..+.
T Consensus 182 ~~~~~~~~s~~~d~~i~i~d~~~~~~~------~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg-~i~iwd~~~~~~~~~~~ 254 (340)
T 4aow_A 182 NSSNPIIVSCGWDKLVKVWNLANCKLK------TNHIGHTGYLNTVTVSPDGSLCASGGKDG-QAMLWDLNEGKHLYTLD 254 (340)
T ss_dssp CSSSCEEEEEETTSCEEEEETTTTEEE------EEECCCSSCEEEEEECTTSSEEEEEETTC-EEEEEETTTTEEEEEEE
T ss_pred CCCCcEEEEEcCCCEEEEEECCCCcee------eEecCCCCcEEEEEECCCCCEEEEEeCCC-eEEEEEeccCceeeeec
Confidence 35789999999999999999877 56678999999999999999999999997 99999999999999999
Q ss_pred CCCCEEEEEEeCC-EEEEEEcCCeEEEEECCCCcEEEEec--------ccCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1022 TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQ--------TGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1022 ~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~~~~~l~--------~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
++..+.++.|+|+ .+++++.|+.|++||+.++..+..+. .+|...|++++|+|||++|++|+.||+|+|||
T Consensus 255 ~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~ 334 (340)
T 4aow_A 255 GGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 334 (340)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 9999999999998 78888899999999999988776653 36788999999999999999999999999999
Q ss_pred CC
Q 001349 1093 LS 1094 (1094)
Q Consensus 1093 ls 1094 (1094)
++
T Consensus 335 ~~ 336 (340)
T 4aow_A 335 VT 336 (340)
T ss_dssp EE
T ss_pred CC
Confidence 73
No 14
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.8e-34 Score=333.76 Aligned_cols=281 Identities=17% Similarity=0.280 Sum_probs=238.4
Q ss_pred EEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEE
Q 001349 798 DFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSG 873 (1094)
Q Consensus 798 ~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSg 873 (1094)
..|+.. .+...+.+|.+.|++++|+|+ +|+||+.||+|+|||+.++ .....+..|...|.+++|+|+|++|++|
T Consensus 49 ~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~--~~~~~~~~h~~~v~~~~~s~~g~~las~ 126 (380)
T 3iz6_a 49 VSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTS--QKTHAIKLHCPWVMECAFAPNGQSVACG 126 (380)
T ss_dssp CCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTT--EEEEEEECCCTTCCCCEECTTSSEEEEC
T ss_pred cccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--ccceEEecCCCCEEEEEECCCCCEEEEe
Confidence 345554 345678999999999999997 9999999999999999998 7888999999999999999999999999
Q ss_pred eCCCcEEEEECCCCce------EEEEecccCccceeeeecCceEEEeeCC-CeEEEEEeCCeEEEEcC------------
Q 001349 874 SLDKTARVWSIGNEEI------HCVQVHDIKDQIQNLAVSNSILCFIPQG-AGIKVHLRNGKTKLLNS------------ 934 (1094)
Q Consensus 874 s~DgtI~vWdi~~~~~------~~~~~~~~~~~V~~v~~~~~~~~fspdg-~~l~~~~~~g~i~l~~~------------ 934 (1094)
+.|++|++||+.++.. .......|...+.++. |.|++ ..+++++.|+.+++|+.
T Consensus 127 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~-------~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~ 199 (380)
T 3iz6_a 127 GLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQ-------YVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSE 199 (380)
T ss_dssp CSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCB-------CCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCC
T ss_pred eCCCcEEEEECCCCccccCCccceeeccCCCcceEEEE-------EecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecc
Confidence 9999999999975321 0111234566677766 77764 56899999999999974
Q ss_pred -----CCCceEEEEeC---CEEEEEEcCCeEEEEECCCC-ceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCE
Q 001349 935 -----SKYPKCLALVQ---GKVYCGCQDGAIQEIDLATG-TFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAA 1005 (1094)
Q Consensus 935 -----~~~v~~l~~s~---~~l~sgs~Dg~I~iwDl~~~-~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~ 1005 (1094)
...+.++.+.+ +.+++|+.||+|++||++.. ... ..+.+|...|++++|+|++.++++++.|+ +
T Consensus 200 ~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~------~~~~~h~~~v~~v~~~p~~~~l~s~s~D~-~ 272 (380)
T 3iz6_a 200 FPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAV------RTYHGHEGDINSVKFFPDGQRFGTGSDDG-T 272 (380)
T ss_dssp SSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCC------EEECCCSSCCCEEEECTTSSEEEEECSSS-C
T ss_pred cCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcce------EEECCcCCCeEEEEEecCCCeEEEEcCCC-e
Confidence 23577788753 57999999999999999844 443 56778999999999999999999999997 9
Q ss_pred EEEEECCCCeEEEEecCC--------CCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEec---ccCCcceEEEEE
Q 001349 1006 VKMWSTSNYNMVGSLPTL--------SEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQ---TGTSGKVQCMAL 1072 (1094)
Q Consensus 1006 I~iwd~~~~~~~~~~~~~--------~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~---~~h~~~I~~l~~ 1072 (1094)
|++||++++..+..+... ..+++++|+|+ ++++|+.||.|++||..+++.+..+. .+|.+.|++++|
T Consensus 273 i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~ 352 (380)
T 3iz6_a 273 CRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGL 352 (380)
T ss_dssp EEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEE
T ss_pred EEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEE
Confidence 999999999998887631 24889999998 89999999999999999998887763 479999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCC
Q 001349 1073 DDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1073 Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
+|||++|++|+.||+|++|+++
T Consensus 353 s~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 353 SSDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp CSSSSEEEEECTTSCEEEEECC
T ss_pred CCCCCEEEEeeCCCCEEEEecC
Confidence 9999999999999999999974
No 15
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.7e-33 Score=322.13 Aligned_cols=275 Identities=15% Similarity=0.192 Sum_probs=222.8
Q ss_pred cCcEEEEeeCCCCeEEEeCCc---------ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEec
Q 001349 784 EMVKVLSNGHDSSADFWNHRE---------LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIR 852 (1094)
Q Consensus 784 d~~~l~s~s~dg~I~vWd~~~---------~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~ 852 (1094)
++.+|++|+.|++|++||... ....+.+|.+.|++++|+|+ ++++|+.||+|++||+.++ ..+..+.
T Consensus 38 d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~--~~~~~~~ 115 (343)
T 2xzm_R 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTG--TTYKRFV 115 (343)
T ss_dssp CCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSS--CEEEEEE
T ss_pred CCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC--cEEEEEc
Confidence 788999999999999999852 34567899999999999996 9999999999999999998 7888999
Q ss_pred ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEE-ecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEE
Q 001349 853 EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQ-VHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKL 931 (1094)
Q Consensus 853 ~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~-~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l 931 (1094)
+|.+.|++++|+|++++|++|+.|++|++||+......... ...+...|.++. |+|++....
T Consensus 116 ~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~~~~---------- 178 (343)
T 2xzm_R 116 GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVR-------YSPIMKSAN---------- 178 (343)
T ss_dssp CCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEE-------ECCCCCSCS----------
T ss_pred CCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeee-------ecccccccc----------
Confidence 99999999999999999999999999999999854211111 114556677776 666653100
Q ss_pred EcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEEC
Q 001349 932 LNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWST 1011 (1094)
Q Consensus 932 ~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~ 1011 (1094)
.+......+++|+.||.|++||. ++... ..+.+|...|++++|+|++.++++++.|+ .|++||+
T Consensus 179 --------~~~~~~~~l~s~~~d~~i~iwd~-~~~~~------~~~~~h~~~v~~~~~s~~g~~l~sgs~dg-~v~iwd~ 242 (343)
T 2xzm_R 179 --------KVQPFAPYFASVGWDGRLKVWNT-NFQIR------YTFKAHESNVNHLSISPNGKYIATGGKDK-KLLIWDI 242 (343)
T ss_dssp --------CCCSSCCEEEEEETTSEEEEEET-TTEEE------EEEECCSSCEEEEEECTTSSEEEEEETTC-EEEEEES
T ss_pred --------ccCCCCCEEEEEcCCCEEEEEcC-CCcee------EEEcCccccceEEEECCCCCEEEEEcCCC-eEEEEEC
Confidence 00011235899999999999994 34333 45678999999999999999999999997 9999999
Q ss_pred C-CCeEEEEecCCCCEEEEEEeCC-EEEEEEcCCeEEEEECCCCcEEE--Eec----------ccCCcceEEEEEcCCCC
Q 001349 1012 S-NYNMVGSLPTLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIE--TLQ----------TGTSGKVQCMALDDNEE 1077 (1094)
Q Consensus 1012 ~-~~~~~~~~~~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~~~~--~l~----------~~h~~~I~~l~~Spdg~ 1077 (1094)
. .......+.+...|.+++|+|+ .+++++.|+.|++||+.+++... .+. .+|...|++++|+|+|+
T Consensus 243 ~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 322 (343)
T 2xzm_R 243 LNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGK 322 (343)
T ss_dssp SCCSSCSEEEECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSC
T ss_pred CCCcccceeecCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCC
Confidence 4 4555566667778999999999 44556678889999998776433 432 16788899999999999
Q ss_pred EEEEEeCCCcEEEEeC
Q 001349 1078 FLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1078 ~L~sgs~DG~I~iWdl 1093 (1094)
+|++|+.||+|++|++
T Consensus 323 ~l~sg~~Dg~v~~w~~ 338 (343)
T 2xzm_R 323 KLFAGFTDGVIRTFSF 338 (343)
T ss_dssp CEEEEETTSEEEEEEE
T ss_pred eEEEecCCceEEEEEE
Confidence 9999999999999996
No 16
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-33 Score=316.94 Aligned_cols=278 Identities=16% Similarity=0.227 Sum_probs=224.1
Q ss_pred ceeecccCCCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEe-cc-cCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 001349 805 LVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQI-RE-HTKAVTGLAILQSGEMLYSGSLDKTARVW 882 (1094)
Q Consensus 805 ~~~~~~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l-~~-H~~~V~sv~fspdg~~LaSgs~DgtI~vW 882 (1094)
....+.+|.+.|++++|++++|++|+.||+|++||+.++....+..+ .+ |.+.|++++|+|++++|++|+.|++|++|
T Consensus 6 ~~~~~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw 85 (330)
T 2hes_X 6 LIKSLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIW 85 (330)
T ss_dssp EEEEEECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred cceeeccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 34567899999999999999999999999999999988644556666 44 99999999999999999999999999999
Q ss_pred ECCCCc-----eEE-EEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC----------------CCCceE
Q 001349 883 SIGNEE-----IHC-VQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS----------------SKYPKC 940 (1094)
Q Consensus 883 di~~~~-----~~~-~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~----------------~~~v~~ 940 (1094)
|+..+. ... .....|...|.+++ |+|+|+++++++.|+.+++|+. ...|.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~-------~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~ 158 (330)
T 2hes_X 86 AKEESADRTFEMDLLAIIEGHENEVKGVA-------WSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKH 158 (330)
T ss_dssp EC-------CCCEEEEEEC----CEEEEE-------ECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEE
T ss_pred EcccCcCccccceeEEEEcCCCCcEEEEE-------ECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEE
Confidence 986421 122 22345778888888 9999999999999999999985 234788
Q ss_pred EEEeC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCC--ccEEEEEECCCCEEEEEECCCC--
Q 001349 941 LALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG--LVYTASTSLDGAAVKMWSTSNY-- 1014 (1094)
Q Consensus 941 l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~--~~~las~s~Dg~~I~iwd~~~~-- 1014 (1094)
+.|++ ..+++|+.|++|++||..++..... ..+.+|...|.+++|+|+ +.++++++.|+ +|++||+.++
T Consensus 159 v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~----~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~-~v~iw~~~~~~~ 233 (330)
T 2hes_X 159 VIWHPSEALLASSSYDDTVRIWKDYDDDWECV----AVLNGHEGTVWSSDFDKTEGVFRLCSGSDDS-TVRVWKYMGDDE 233 (330)
T ss_dssp EEECSSSSEEEEEETTSCEEEEEEETTEEEEE----EEECCCSSCEEEEEECCSSSSCEEEEEETTS-CEEEEEEEEECT
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCCeeEE----EEccCCCCcEEEEEecCCCCeeEEEEEeCCC-eEEEEEecCCCc
Confidence 88875 4699999999999999887632111 567789999999999998 77899999996 9999998754
Q ss_pred ------eEEEEec--CCCCEEEEEEeCC-EEEEEEcCCeEEEEECCCCc--EEEEecccCCc-ceEEEEEcC--CCCEEE
Q 001349 1015 ------NMVGSLP--TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQI--RIETLQTGTSG-KVQCMALDD--NEEFLV 1080 (1094)
Q Consensus 1015 ------~~~~~~~--~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~--~~~~l~~~h~~-~I~~l~~Sp--dg~~L~ 1080 (1094)
.+...+. |...|.+++|+++ ++++|+.||+|++||..++. .+.....+|.. .|++++|+| ++++|+
T Consensus 234 ~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~la 313 (330)
T 2hes_X 234 DDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILA 313 (330)
T ss_dssp TSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEE
T ss_pred cccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEE
Confidence 3444554 6788999999987 89999999999999998874 34444357877 899999999 789999
Q ss_pred EEeCCCcEEEEeCC
Q 001349 1081 IGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1081 sgs~DG~I~iWdls 1094 (1094)
+|+.||+|++||+.
T Consensus 314 s~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 314 TGGDDGIVNFWSLE 327 (330)
T ss_dssp EEETTSEEEEEEC-
T ss_pred EecCCCcEEEEEec
Confidence 99999999999974
No 17
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=9.1e-33 Score=322.55 Aligned_cols=279 Identities=20% Similarity=0.315 Sum_probs=227.4
Q ss_pred hhccccccccccCcEEEEeeCCCCeEEEeCCc--ceeecccCC------------------CcEEEEEEeCC--EEEEEE
Q 001349 773 RELRKYSPLAFEMVKVLSNGHDSSADFWNHRE--LVHVDSSEN------------------GKVLSIACFRD--KIFSGH 830 (1094)
Q Consensus 773 ~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~--~~~~~~~h~------------------~~V~~l~fspd--~LaSgs 830 (1094)
...+....|++|+.++++|+ ++++++|+... ....+..|. ..|++++|+|+ +|++|+
T Consensus 64 ~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~ 142 (393)
T 1erj_A 64 TSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA 142 (393)
T ss_dssp SSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEE
T ss_pred CCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEc
Confidence 34455677888999999976 78999999873 333333332 34999999997 999999
Q ss_pred CCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCce
Q 001349 831 SDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSI 910 (1094)
Q Consensus 831 ~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~ 910 (1094)
.||+|++||+.++ +.+..+.+|...|++++|+|++++|++|+.|++|++||+.+++. .....+...+.++.
T Consensus 143 ~d~~i~iwd~~~~--~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~----- 213 (393)
T 1erj_A 143 EDRLIRIWDIENR--KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC--SLTLSIEDGVTTVA----- 213 (393)
T ss_dssp TTSCEEEEETTTT--EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE--EEEEECSSCEEEEE-----
T ss_pred CCCeEEEEECCCC--cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee--EEEEEcCCCcEEEE-----
Confidence 9999999999998 78889999999999999999999999999999999999999753 22233345555555
Q ss_pred EEEee-CCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccc-eeecCCCCCeEEEE
Q 001349 911 LCFIP-QGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGH-RKLLGKANPVHALQ 988 (1094)
Q Consensus 911 ~~fsp-dg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~-~~~~~h~~~V~sl~ 988 (1094)
|+| +|+ .+++|+.||.|++||++++.....+... ....+|...|++++
T Consensus 214 --~~~~~~~----------------------------~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 263 (393)
T 1erj_A 214 --VSPGDGK----------------------------YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVV 263 (393)
T ss_dssp --ECSTTCC----------------------------EEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEE
T ss_pred --EECCCCC----------------------------EEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEE
Confidence 666 444 4889999999999999999876543211 12367999999999
Q ss_pred EeCCccEEEEEECCCCEEEEEECCCC------------eEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCC
Q 001349 989 VHNGLVYTASTSLDGAAVKMWSTSNY------------NMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQ 1053 (1094)
Q Consensus 989 fs~~~~~las~s~Dg~~I~iwd~~~~------------~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~ 1053 (1094)
|+|++.++++++.|+ +|++||+++. .+...+. |...|.+++|+++ ++++|+.||.|++||..++
T Consensus 264 ~~~~g~~l~s~s~d~-~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~ 342 (393)
T 1erj_A 264 FTRDGQSVVSGSLDR-SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG 342 (393)
T ss_dssp ECTTSSEEEEEETTS-EEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC
T ss_pred ECCCCCEEEEEeCCC-EEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence 999999999999997 9999999753 2334444 7788999999987 8999999999999999999
Q ss_pred cEEEEecccCCcceEEEEEcC------CCCEEEEEeCCCcEEEEeC
Q 001349 1054 IRIETLQTGTSGKVQCMALDD------NEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1054 ~~~~~l~~~h~~~I~~l~~Sp------dg~~L~sgs~DG~I~iWdl 1093 (1094)
+++..+ .+|.+.|.+++|++ ++++|++|+.||+|++|++
T Consensus 343 ~~~~~l-~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~ 387 (393)
T 1erj_A 343 NPLLML-QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 387 (393)
T ss_dssp CEEEEE-ECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred eEEEEE-CCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcc
Confidence 999998 58999999999986 6889999999999999986
No 18
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.7e-32 Score=335.98 Aligned_cols=296 Identities=23% Similarity=0.396 Sum_probs=259.6
Q ss_pred cccccccccCcEEEEeeCCCCeEEEeCC-cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEec
Q 001349 776 RKYSPLAFEMVKVLSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIR 852 (1094)
Q Consensus 776 ~~~~~~~~d~~~l~s~s~dg~I~vWd~~-~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~ 852 (1094)
+....+.+++.++++++.|+.|++||.. +....+.+|...|.+++|+|+ .+++++.|++|++||... ..+..+.
T Consensus 224 v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~---~~~~~~~ 300 (577)
T 2ymu_A 224 VRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG---QLLQTLT 300 (577)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS---CEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC---cEEEEEe
Confidence 3455677889999999999999999987 566778899999999999997 999999999999999765 4678889
Q ss_pred ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEE
Q 001349 853 EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLL 932 (1094)
Q Consensus 853 ~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~ 932 (1094)
+|...|++++|+|++++|++++.||+|++||..+.... ....+...+.+++ |+|+|+.++++..++.+++|
T Consensus 301 ~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~--~~~~~~~~v~~~~-------~s~~g~~l~~~~~dg~v~~~ 371 (577)
T 2ymu_A 301 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQ--TLTGHSSSVWGVA-------FSPDGQTIASASDDKTVKLW 371 (577)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEE--EECCCSSCEEEEE-------ECTTSSEEEEEETTSEEEEE
T ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeE--EEeCCCCCEEEEE-------ECCCCCEEEEEeCCCEEEEE
Confidence 99999999999999999999999999999999876433 3345677888877 99999999999999999999
Q ss_pred cC-----------CCCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEE
Q 001349 933 NS-----------SKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTAST 999 (1094)
Q Consensus 933 ~~-----------~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~ 999 (1094)
+. ...|.+++|++ ..+++++.|+.|++||. +++.. ..+.+|...|++++|+|++.+++++
T Consensus 372 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~------~~~~~~~~~v~~~~~s~d~~~l~~~ 444 (577)
T 2ymu_A 372 NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLL------QTLTGHSSSVWGVAFSPDDQTIASA 444 (577)
T ss_dssp ETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEE------EEEECCSSCEEEEEECTTSSEEEEE
T ss_pred cCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEE------EEecCCCCCeEEEEECCCCCEEEEE
Confidence 74 45688999986 35999999999999995 45554 5667899999999999999999999
Q ss_pred ECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCC
Q 001349 1000 SLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNE 1076 (1094)
Q Consensus 1000 s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg 1076 (1094)
+.|+ +|++||. +++.+..+. |...|.+++|+|+ ++++++.|++|++||. +++.+..+ .+|.+.|++++|+|||
T Consensus 445 ~~d~-~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~-~~h~~~v~~l~~s~dg 520 (577)
T 2ymu_A 445 SDDK-TVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL-TGHSSSVRGVAFSPDG 520 (577)
T ss_dssp ETTS-EEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEE-ECCSSCEEEEEECTTS
T ss_pred cCCC-EEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEE-eCCCCCEEEEEEcCCC
Confidence 9996 9999997 456666665 7889999999998 8999999999999995 67888888 5899999999999999
Q ss_pred CEEEEEeCCCcEEEEeCC
Q 001349 1077 EFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1077 ~~L~sgs~DG~I~iWdls 1094 (1094)
++|++++.||+|++||.+
T Consensus 521 ~~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 521 QTIASASDDKTVKLWNRN 538 (577)
T ss_dssp SCEEEEETTSEEEEECTT
T ss_pred CEEEEEECcCEEEEEeCC
Confidence 999999999999999963
No 19
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.5e-32 Score=307.43 Aligned_cols=278 Identities=18% Similarity=0.286 Sum_probs=235.0
Q ss_pred hhhccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCccee
Q 001349 772 LRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHL 847 (1094)
Q Consensus 772 ~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~ 847 (1094)
|...+....+.+++.++++++.||.|++|+.. .....+.+|...|.+++|+|+ +|++|+.||+|++||+.++ .+
T Consensus 22 h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~--~~ 99 (312)
T 4ery_A 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KC 99 (312)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--CE
T ss_pred cCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCC--cE
Confidence 33445566788899999999999999999986 456678899999999999996 9999999999999999998 78
Q ss_pred EEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCC
Q 001349 848 IQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNG 927 (1094)
Q Consensus 848 ~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g 927 (1094)
+..+.+|...|.++.|+|++++|++|+.||+|++||+.+++. ......+..+|.++. |+|+|+
T Consensus 100 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~-------~~~~~~--------- 162 (312)
T 4ery_A 100 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVH-------FNRDGS--------- 162 (312)
T ss_dssp EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEE-------ECTTSS---------
T ss_pred EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE-EEEecCCCCcEEEEE-------EcCCCC---------
Confidence 889999999999999999999999999999999999998752 222234556676666 677666
Q ss_pred eEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEE
Q 001349 928 KTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVK 1007 (1094)
Q Consensus 928 ~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~ 1007 (1094)
.+++|+.||.|++||+++++....+ ...+...+..++|+|++.++++++.|+ .|+
T Consensus 163 -------------------~l~~~~~d~~i~~wd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~d~-~i~ 217 (312)
T 4ery_A 163 -------------------LIVSSSYDGLCRIWDTASGQCLKTL-----IDDDNPPVSFVKFSPNGKYILAATLDN-TLK 217 (312)
T ss_dssp -------------------EEEEEETTSCEEEEETTTCCEEEEE-----CCSSCCCEEEEEECTTSSEEEEEETTT-EEE
T ss_pred -------------------EEEEEeCCCcEEEEECCCCceeeEE-----eccCCCceEEEEECCCCCEEEEEcCCC-eEE
Confidence 3889999999999999998876422 234667899999999999999999997 999
Q ss_pred EEECCCCeEEEEec-CCCC--EEEEEEe-CC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEE
Q 001349 1008 MWSTSNYNMVGSLP-TLSE--VRAMVVS-SE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVI 1081 (1094)
Q Consensus 1008 iwd~~~~~~~~~~~-~~~~--v~~l~~s-pd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~s 1081 (1094)
+||+++++.+..+. |... .....++ ++ ++++|+.||.|++||+.+++.+..+ .+|.+.|.+++|+|+++++++
T Consensus 218 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s 296 (312)
T 4ery_A 218 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL-QGHTDVVISTACHPTENIIAS 296 (312)
T ss_dssp EEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECSSSSEEEE
T ss_pred EEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhh-hccCCcEEEEeecCcCCceEE
Confidence 99999999998887 3322 2223333 33 8999999999999999999999999 589999999999999999999
Q ss_pred Ee--CCCcEEEEeCC
Q 001349 1082 GT--SDGRIQAWGLS 1094 (1094)
Q Consensus 1082 gs--~DG~I~iWdls 1094 (1094)
++ .||+|++|+..
T Consensus 297 ~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 297 AALENDKTIKLWKSD 311 (312)
T ss_dssp EECTTTCCEEEEECC
T ss_pred EEccCCccEEEecCC
Confidence 97 69999999863
No 20
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.2e-32 Score=309.72 Aligned_cols=245 Identities=19% Similarity=0.261 Sum_probs=215.6
Q ss_pred ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 001349 805 LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVW 882 (1094)
Q Consensus 805 ~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vW 882 (1094)
...++.+|.+.|++++|+|+ +|++|+.||+|++||+.++ ..+..+..|...|.+++|+|++++|++|+.|++|++|
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ--VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT--EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC--ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence 35677899999999999997 9999999999999999998 7889999999999999999999999999999999999
Q ss_pred ECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEEC
Q 001349 883 SIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDL 962 (1094)
Q Consensus 883 di~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl 962 (1094)
|+.+++. ......|...|.+++ |+|++.. +++|+.||+|++||+
T Consensus 83 d~~~~~~-~~~~~~h~~~v~~~~-------~~~~~~~----------------------------l~sgs~D~~v~lWd~ 126 (304)
T 2ynn_A 83 NYNTGEK-VVDFEAHPDYIRSIA-------VHPTKPY----------------------------VLSGSDDLTVKLWNW 126 (304)
T ss_dssp ETTTCCE-EEEEECCSSCEEEEE-------ECSSSSE----------------------------EEEEETTSCEEEEEG
T ss_pred ECCCCcE-EEEEeCCCCcEEEEE-------EcCCCCE----------------------------EEEECCCCeEEEEEC
Confidence 9999862 223345677777777 7777764 889999999999999
Q ss_pred CCCceeEEeccceeecCCCCCeEEEEEeC-CccEEEEEECCCCEEEEEECCCCeEEEEec--CCCCEEEEEEeC--C--E
Q 001349 963 ATGTFATIQTGHRKLLGKANPVHALQVHN-GLVYTASTSLDGAAVKMWSTSNYNMVGSLP--TLSEVRAMVVSS--E--L 1035 (1094)
Q Consensus 963 ~~~~~~~~~~~~~~~~~h~~~V~sl~fs~-~~~~las~s~Dg~~I~iwd~~~~~~~~~~~--~~~~v~~l~~sp--d--~ 1035 (1094)
+++.... ..+.+|...|.+++|+| ++.++++++.|+ +|++||++++.....+. +...+..+.++| + +
T Consensus 127 ~~~~~~~-----~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~-~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 200 (304)
T 2ynn_A 127 ENNWALE-----QTFEGHEHFVMCVAFNPKDPSTFASGCLDR-TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPY 200 (304)
T ss_dssp GGTTEEE-----EEECCCCSCEEEEEECTTCTTEEEEEETTS-EEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCE
T ss_pred CCCcchh-----hhhcccCCcEEEEEECCCCCCEEEEEeCCC-eEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCE
Confidence 8875442 46778999999999998 678999999997 99999998877666655 457799999976 3 8
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1036 VYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1036 l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
+++|+.||+|++||+.+++++..+ .+|...|++++|+|++++|++|+.||+|++||+.
T Consensus 201 l~s~s~D~~i~iWd~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~ 258 (304)
T 2ynn_A 201 MITASDDLTIKIWDYQTKSCVATL-EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258 (304)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred EEEEcCCCeEEEEeCCCCccceee-CCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence 999999999999999999999999 5899999999999999999999999999999973
No 21
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=7e-32 Score=320.03 Aligned_cols=293 Identities=22% Similarity=0.336 Sum_probs=258.8
Q ss_pred ccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccCC
Q 001349 779 SPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTK 856 (1094)
Q Consensus 779 ~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~ 856 (1094)
..+.+++.++++|+.||+|++||.. .....+.+|.+.|++++|+++++++|+.||+|++||+.++ ..+..+.+|..
T Consensus 123 ~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~h~~ 200 (445)
T 2ovr_B 123 TCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETG--ECIHTLYGHTS 200 (445)
T ss_dssp EEEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTT--EEEEEECCCSS
T ss_pred EEEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECCcC--cEEEEECCCCC
Confidence 3577889999999999999999987 5567788999999999999999999999999999999999 78899999999
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC--
Q 001349 857 AVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS-- 934 (1094)
Q Consensus 857 ~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~-- 934 (1094)
.|.++.|+ ++.+++|+.||+|++||+.+++.. .....+...+.++. | +|..+++++.+|.+++|+.
T Consensus 201 ~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~-~~~~~~~~~v~~~~-------~--~~~~l~~~~~dg~i~iwd~~~ 268 (445)
T 2ovr_B 201 TVRCMHLH--EKRVVSGSRDATLRVWDIETGQCL-HVLMGHVAAVRCVQ-------Y--DGRRVVSGAYDFMVKVWDPET 268 (445)
T ss_dssp CEEEEEEE--TTEEEEEETTSEEEEEESSSCCEE-EEEECCSSCEEEEE-------E--CSSCEEEEETTSCEEEEEGGG
T ss_pred cEEEEEec--CCEEEEEeCCCEEEEEECCCCcEE-EEEcCCcccEEEEE-------E--CCCEEEEEcCCCEEEEEECCC
Confidence 99999995 678999999999999999987632 22334567777766 4 7889999999999999973
Q ss_pred ----------CCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCC
Q 001349 935 ----------SKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGA 1004 (1094)
Q Consensus 935 ----------~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~ 1004 (1094)
...+.++.+.+..+++|+.||.|++||+.+++.. ..+.+|...+.++.+++ .++++++.||
T Consensus 269 ~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~------~~~~~~~~~v~~~~~~~--~~l~~~~~dg- 339 (445)
T 2ovr_B 269 ETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCI------HTLTGHQSLTSGMELKD--NILVSGNADS- 339 (445)
T ss_dssp TEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEE------EEECCCCSCEEEEEEET--TEEEEEETTS-
T ss_pred CcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEE------EEEcCCcccEEEEEEeC--CEEEEEeCCC-
Confidence 4678999998889999999999999999999887 45667888999888864 4788888886
Q ss_pred EEEEEECCCCeEEEEec----CCCCEEEEEEeCCEEEEEEcCCeEEEEECCCCcEEEEec----ccCCcceEEEEEcCCC
Q 001349 1005 AVKMWSTSNYNMVGSLP----TLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQ----TGTSGKVQCMALDDNE 1076 (1094)
Q Consensus 1005 ~I~iwd~~~~~~~~~~~----~~~~v~~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~----~~h~~~I~~l~~Spdg 1076 (1094)
.|++||+++++.+..+. |...|.+++|+++++++|+.||.|++||+.+++.+..+. .+|.+.|++++|+|++
T Consensus 340 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 419 (445)
T 2ovr_B 340 TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTK 419 (445)
T ss_dssp CEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSE
T ss_pred eEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCE
Confidence 99999999999998887 567899999999999999999999999999999888872 3678899999999999
Q ss_pred CEEEEEeCCCc----EEEEeCC
Q 001349 1077 EFLVIGTSDGR----IQAWGLS 1094 (1094)
Q Consensus 1077 ~~L~sgs~DG~----I~iWdls 1094 (1094)
.++++|+.||+ |.+||+.
T Consensus 420 ~~la~~~~dg~~~~~l~v~df~ 441 (445)
T 2ovr_B 420 LVCAVGSRNGTEETKLLVLDFD 441 (445)
T ss_dssp EEEEEECSSSSSCCEEEEEECC
T ss_pred EEEEEcccCCCCccEEEEEECC
Confidence 99999999998 9999974
No 22
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-32 Score=315.71 Aligned_cols=298 Identities=12% Similarity=0.143 Sum_probs=250.2
Q ss_pred cccccccccCc-EEEEeeCCCCeEEEeC----Ccc--------eeeccc----------CCCcEEEEEEeCC--EEEEEE
Q 001349 776 RKYSPLAFEMV-KVLSNGHDSSADFWNH----REL--------VHVDSS----------ENGKVLSIACFRD--KIFSGH 830 (1094)
Q Consensus 776 ~~~~~~~~d~~-~l~s~s~dg~I~vWd~----~~~--------~~~~~~----------h~~~V~~l~fspd--~LaSgs 830 (1094)
+....+.+++. ++++++.||.|++|++ ... ...+.. |.+.|++++|+|+ +|++|+
T Consensus 48 v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 127 (425)
T 1r5m_A 48 IVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGV 127 (425)
T ss_dssp CSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEE
T ss_pred eEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEe
Confidence 34566778898 9999999999999999 522 222222 6789999999997 999999
Q ss_pred CCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCcc----------
Q 001349 831 SDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQ---------- 900 (1094)
Q Consensus 831 ~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~---------- 900 (1094)
.||.|++|| .++ ..+..+.+|...|++++|+|++++|++++.||+|++||+.+++..... ..+...
T Consensus 128 ~dg~i~i~~-~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~ 203 (425)
T 1r5m_A 128 ENGELRLWN-KTG--ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHF-ELKETGGSSINAENHS 203 (425)
T ss_dssp TTSCEEEEE-TTS--CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEE-CCC-------------
T ss_pred CCCeEEEEe-CCC--CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEe-eccccCccceeecccc
Confidence 999999999 445 578889999999999999999999999999999999999988532222 112222
Q ss_pred -----ceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC------------CCCceEEEEeC--CEEEEEEcCCeEEEEE
Q 001349 901 -----IQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS------------SKYPKCLALVQ--GKVYCGCQDGAIQEID 961 (1094)
Q Consensus 901 -----V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~------------~~~v~~l~~s~--~~l~sgs~Dg~I~iwD 961 (1094)
+.++. |++++. ++++..+|.+.+|+. ...+.++.+++ ..+++++.||.|++||
T Consensus 204 ~~~~~~~~~~-------~~~~~~-~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d 275 (425)
T 1r5m_A 204 GDGSLGVDVE-------WVDDDK-FVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWH 275 (425)
T ss_dssp --CCCBSCCE-------EEETTE-EEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEC
T ss_pred CCcceeeEEE-------EcCCCE-EEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence 55555 888754 778888999999974 45688999985 4699999999999999
Q ss_pred CCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEE
Q 001349 962 LATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYL 1038 (1094)
Q Consensus 962 l~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~s 1038 (1094)
+.+++.. ..+.+|...|.++.|+|++ ++++++.|+ .|++||+.+++.+..+. |...+.+++|+|+ ++++
T Consensus 276 ~~~~~~~------~~~~~~~~~i~~~~~~~~~-~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 347 (425)
T 1r5m_A 276 GGNGNSQ------NCFYGHSQSIVSASWVGDD-KVISCSMDG-SVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAV 347 (425)
T ss_dssp SSSBSCS------EEECCCSSCEEEEEEETTT-EEEEEETTS-EEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEE
T ss_pred CCCCccc------eEecCCCccEEEEEECCCC-EEEEEeCCC-cEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEE
Confidence 9988776 4566788999999999999 888998886 99999999999998887 6789999999998 8999
Q ss_pred EEcCCeEEEEECCCCc--------------------EEEEecccCCc--ceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1039 GCKGGTVEIWDQKRQI--------------------RIETLQTGTSG--KVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1039 gs~dg~I~vwd~~t~~--------------------~~~~l~~~h~~--~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
|+.||.|++||+.+++ .+..+ .+|.. .|++++|+|++++|++++.||.|++||+.
T Consensus 348 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 348 AFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASY-QSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EETTSCEEEEECHHHHC--------------CEECCEEEEE-CCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred EECCCeEEEEECCCCccceeeeecccccccCcccchhhhhh-cCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 9999999999999888 88888 47765 99999999999999999999999999984
No 23
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.9e-32 Score=321.73 Aligned_cols=242 Identities=21% Similarity=0.366 Sum_probs=217.7
Q ss_pred eeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 001349 806 VHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWS 883 (1094)
Q Consensus 806 ~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWd 883 (1094)
...+.+|.++|++++|+|+ +|++|+.||+|+|||+.++ ....++.+|.+.|++++|+|+|++|++|+.||+|++||
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~--~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG--DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD 178 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTC--CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEE
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Confidence 4567899999999999996 9999999999999999998 67889999999999999999999999999999999999
Q ss_pred CCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECC
Q 001349 884 IGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLA 963 (1094)
Q Consensus 884 i~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~ 963 (1094)
+.+++. ......|...|.++. |+|+|. .+++|+.|++|++||+.
T Consensus 179 ~~~~~~-~~~~~~h~~~V~~v~-------~~p~~~----------------------------~l~s~s~D~~i~~wd~~ 222 (410)
T 1vyh_C 179 FQGFEC-IRTMHGHDHNVSSVS-------IMPNGD----------------------------HIVSASRDKTIKMWEVQ 222 (410)
T ss_dssp TTSSCE-EECCCCCSSCEEEEE-------ECSSSS----------------------------EEEEEETTSEEEEEETT
T ss_pred CCCCce-eEEEcCCCCCEEEEE-------EeCCCC----------------------------EEEEEeCCCeEEEEECC
Confidence 988642 222334566777776 777766 48899999999999999
Q ss_pred CCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--------
Q 001349 964 TGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE-------- 1034 (1094)
Q Consensus 964 ~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd-------- 1034 (1094)
++..+ ..+.+|...|.++.|++++.++++++.|+ +|++||+.++.+...+. |...|.+++|+|+
T Consensus 223 ~~~~~------~~~~~h~~~v~~~~~~~~g~~l~s~s~D~-~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 295 (410)
T 1vyh_C 223 TGYCV------KTFTGHREWVRMVRPNQDGTLIASCSNDQ-TVRVWVVATKECKAELREHRHVVECISWAPESSYSSISE 295 (410)
T ss_dssp TCCEE------EEEECCSSCEEEEEECTTSSEEEEEETTS-CEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGG
T ss_pred CCcEE------EEEeCCCccEEEEEECCCCCEEEEEcCCC-eEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhh
Confidence 99887 56678999999999999999999999997 99999999999988887 7788999999983
Q ss_pred --------------EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1035 --------------LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1035 --------------~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
++++|+.||+|++||+.+++++..+ .+|.+.|++++|+|+|++|++|+.||+|++||+
T Consensus 296 ~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~-~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~ 367 (410)
T 1vyh_C 296 ATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL-VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367 (410)
T ss_dssp CCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEECSSSSCEEEEETTTEEEEECC
T ss_pred hccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEE-ECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 7999999999999999999999999 589999999999999999999999999999997
No 24
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-31 Score=304.92 Aligned_cols=269 Identities=15% Similarity=0.246 Sum_probs=242.4
Q ss_pred eecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q 001349 807 HVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSI 884 (1094)
Q Consensus 807 ~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi 884 (1094)
..+.+|.+.|++++|+|+ +|++|+.||.|++||+.++ ..+..+.+|.+.|++++|+|++++|++++.||+|++||+
T Consensus 26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 103 (369)
T 3zwl_B 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG--ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV 103 (369)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTC--CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc--hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 457899999999999996 9999999999999999998 788999999999999999999999999999999999999
Q ss_pred CCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeC-----CeEEEEcCCC-----------------------
Q 001349 885 GNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRN-----GKTKLLNSSK----------------------- 936 (1094)
Q Consensus 885 ~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~-----g~i~l~~~~~----------------------- 936 (1094)
.+++.. ....+...+.++. |+|+++.++++..+ +.+.+|+...
T Consensus 104 ~~~~~~--~~~~~~~~v~~~~-------~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (369)
T 3zwl_B 104 SNGQCV--ATWKSPVPVKRVE-------FSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEG 174 (369)
T ss_dssp TTCCEE--EEEECSSCEEEEE-------ECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTT
T ss_pred CCCcEE--EEeecCCCeEEEE-------EccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcC
Confidence 998533 3333677888887 99999999999998 9999998421
Q ss_pred --CceEEEEeC--CEEEEEEcCCeEEEEECCC-CceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEEC
Q 001349 937 --YPKCLALVQ--GKVYCGCQDGAIQEIDLAT-GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWST 1011 (1094)
Q Consensus 937 --~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~-~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~ 1011 (1094)
.+.++.+++ ..+++|+.||.|++||+.+ +... ..+..|...|.+++|+|++.++++++.|+ .|++||+
T Consensus 175 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~v~d~ 247 (369)
T 3zwl_B 175 LDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYV------DSIDLHEKSISDMQFSPDLTYFITSSRDT-NSFLVDV 247 (369)
T ss_dssp CCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEE------EEEECCSSCEEEEEECTTSSEEEEEETTS-EEEEEET
T ss_pred ccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeE------EEEecCCCceeEEEECCCCCEEEEecCCc-eEEEEEC
Confidence 788888875 4799999999999999998 4554 56677889999999999999999999987 9999999
Q ss_pred CCCeEEEEecCCCCEEEEEEeCC--EEEEEEcCC--------------eEEEEECCCCcEEEEecccCCcceEEEEEcCC
Q 001349 1012 SNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGG--------------TVEIWDQKRQIRIETLQTGTSGKVQCMALDDN 1075 (1094)
Q Consensus 1012 ~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg--------------~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spd 1075 (1094)
.+++.+..+.+...+..++|+|+ ++++++.++ .+++||..+++.+..+ .+|.+.|++++|+|+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~v~~~~~s~~ 326 (369)
T 3zwl_B 248 STLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRV-QGHFGPLNTVAISPQ 326 (369)
T ss_dssp TTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEE-ECCSSCEEEEEECTT
T ss_pred CCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhe-ecccCcEEEEEECCC
Confidence 99999999999999999999998 888888887 8999999999999999 589999999999999
Q ss_pred CCEEEEEeCCCcEEEEeCC
Q 001349 1076 EEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1076 g~~L~sgs~DG~I~iWdls 1094 (1094)
+++|++++.||+|++|++.
T Consensus 327 ~~~l~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 327 GTSYASGGEDGFIRLHHFE 345 (369)
T ss_dssp SSEEEEEETTSEEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEECc
Confidence 9999999999999999974
No 25
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=7.3e-32 Score=305.95 Aligned_cols=244 Identities=20% Similarity=0.334 Sum_probs=214.6
Q ss_pred eecccCCCcEEEEEEeCC------EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEE
Q 001349 807 HVDSSENGKVLSIACFRD------KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTAR 880 (1094)
Q Consensus 807 ~~~~~h~~~V~~l~fspd------~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~ 880 (1094)
....+|.+.|++++|+++ +|+||+.||+|+|||+.++.......+.+|...|.+++|++++.++++++.|++|+
T Consensus 26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~ 105 (321)
T 3ow8_A 26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIR 105 (321)
T ss_dssp EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 456789999999999863 89999999999999998875556678899999999999999999999999999999
Q ss_pred EEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEE
Q 001349 881 VWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEI 960 (1094)
Q Consensus 881 vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iw 960 (1094)
+||+.+++.. .....+...+.++. |+|+|+. +++|+.||.|++|
T Consensus 106 lWd~~~~~~~-~~~~~~~~~~~~~~-------~spdg~~----------------------------l~~g~~dg~v~i~ 149 (321)
T 3ow8_A 106 LWDLENGKQI-KSIDAGPVDAWTLA-------FSPDSQY----------------------------LATGTHVGKVNIF 149 (321)
T ss_dssp EEETTTTEEE-EEEECCTTCCCCEE-------ECTTSSE----------------------------EEEECTTSEEEEE
T ss_pred EEECCCCCEE-EEEeCCCccEEEEE-------ECCCCCE----------------------------EEEEcCCCcEEEE
Confidence 9999998522 22223445565655 8888874 7889999999999
Q ss_pred ECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEE
Q 001349 961 DLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVY 1037 (1094)
Q Consensus 961 Dl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~ 1037 (1094)
|+.++... ..+..|...|.+++|+|++.++++++.|| .|++||+++++.+..+. |...|.+++|+|+ +++
T Consensus 150 ~~~~~~~~------~~~~~~~~~v~~~~~spdg~~lasg~~dg-~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~ 222 (321)
T 3ow8_A 150 GVESGKKE------YSLDTRGKFILSIAYSPDGKYLASGAIDG-IINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLV 222 (321)
T ss_dssp ETTTCSEE------EEEECSSSCEEEEEECTTSSEEEEEETTS-CEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEE
T ss_pred EcCCCcee------EEecCCCceEEEEEECCCCCEEEEEcCCC-eEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEE
Confidence 99999876 45567788999999999999999999997 99999999999999988 6788999999998 899
Q ss_pred EEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1038 LGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1038 sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
+|+.||+|++||+.+++....+ .+|...|++++|+|++++|++|+.||+|++||+.
T Consensus 223 s~s~dg~i~iwd~~~~~~~~~~-~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~ 278 (321)
T 3ow8_A 223 TASDDGYIKIYDVQHANLAGTL-SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVG 278 (321)
T ss_dssp EECTTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEcCCCeEEEEECCCcceeEEE-cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCC
Confidence 9999999999999999999998 5899999999999999999999999999999973
No 26
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.3e-31 Score=336.56 Aligned_cols=273 Identities=20% Similarity=0.298 Sum_probs=236.3
Q ss_pred eecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCc---ceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEE
Q 001349 807 HVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSI---LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTAR 880 (1094)
Q Consensus 807 ~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~---~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~ 880 (1094)
..+.+|++.|++++|+++ +|+||+.||+|++||+.+.. ......+.+|...|++++|+|+|++|+||+.||+|+
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~ 455 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELR 455 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEE
Confidence 356799999999999974 89999999999999997642 135677899999999999999999999999999999
Q ss_pred EEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC---------------CCCceEEEEeC
Q 001349 881 VWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS---------------SKYPKCLALVQ 945 (1094)
Q Consensus 881 vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~---------------~~~v~~l~~s~ 945 (1094)
+||+.++.. ......|...|.++. |+|+++.+++++.|+.+++|+. ...|.++.|++
T Consensus 456 vwd~~~~~~-~~~~~~h~~~v~~~~-------~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~ 527 (694)
T 3dm0_A 456 LWDLAAGVS-TRRFVGHTKDVLSVA-------FSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSP 527 (694)
T ss_dssp EEETTTTEE-EEEEECCSSCEEEEE-------ECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECS
T ss_pred EEECCCCcc-eeEEeCCCCCEEEEE-------EeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeC
Confidence 999999852 233446788899888 9999999999999999999984 34589999986
Q ss_pred C----EEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec
Q 001349 946 G----KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP 1021 (1094)
Q Consensus 946 ~----~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~ 1021 (1094)
+ .+++|+.||+|++||+++++.. ..+.+|...|++++|+|++.++++++.|| +|++||+.+++.+..+.
T Consensus 528 ~~~~~~l~s~s~d~~v~vwd~~~~~~~------~~~~~h~~~v~~v~~spdg~~l~sg~~Dg-~i~iwd~~~~~~~~~~~ 600 (694)
T 3dm0_A 528 NTLQPTIVSASWDKTVKVWNLSNCKLR------STLAGHTGYVSTVAVSPDGSLCASGGKDG-VVLLWDLAEGKKLYSLE 600 (694)
T ss_dssp CSSSCEEEEEETTSCEEEEETTTCCEE------EEECCCSSCEEEEEECTTSSEEEEEETTS-BCEEEETTTTEEEECCB
T ss_pred CCCcceEEEEeCCCeEEEEECCCCcEE------EEEcCCCCCEEEEEEeCCCCEEEEEeCCC-eEEEEECCCCceEEEec
Confidence 3 5999999999999999998876 56778999999999999999999999997 99999999999999988
Q ss_pred CCCCEEEEEEeCC-EEEEEEcCCeEEEEECCCCcEEEEecccC------------------CcceEEEEEcCCCCEEEEE
Q 001349 1022 TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQTGT------------------SGKVQCMALDDNEEFLVIG 1082 (1094)
Q Consensus 1022 ~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~~~~~l~~~h------------------~~~I~~l~~Spdg~~L~sg 1082 (1094)
++..+.+++|+|+ .+++++.++.|+|||+.++..+..+...+ ...+++++|||||++|++|
T Consensus 601 ~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sg 680 (694)
T 3dm0_A 601 ANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSG 680 (694)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEE
T ss_pred CCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEE
Confidence 8889999999999 45555667789999999999888774211 1137899999999999999
Q ss_pred eCCCcEEEEeCC
Q 001349 1083 TSDGRIQAWGLS 1094 (1094)
Q Consensus 1083 s~DG~I~iWdls 1094 (1094)
+.||+|++|++.
T Consensus 681 s~Dg~i~iW~i~ 692 (694)
T 3dm0_A 681 YTDGVIRVWGIG 692 (694)
T ss_dssp ETTSEEEEEEC-
T ss_pred cCCCeEEEEecc
Confidence 999999999984
No 27
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.4e-33 Score=322.89 Aligned_cols=305 Identities=11% Similarity=0.122 Sum_probs=254.0
Q ss_pred cccccccccCc-EEEEe----------eCCCCeEEEeCCcc----eeecccCCCcEEEEEEeCC--EEEEEECCCeEEEE
Q 001349 776 RKYSPLAFEMV-KVLSN----------GHDSSADFWNHREL----VHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVW 838 (1094)
Q Consensus 776 ~~~~~~~~d~~-~l~s~----------s~dg~I~vWd~~~~----~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vW 838 (1094)
+....+++++. +++++ +.|+.|++||.... ......|.+.|++++|+|+ +|++|+.||+|++|
T Consensus 15 v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw 94 (416)
T 2pm9_A 15 TATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELY 94 (416)
T ss_dssp SCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEE
T ss_pred cceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEe
Confidence 34566778887 89999 89999999999732 2233468999999999997 99999999999999
Q ss_pred ecCCC--cceeEEEecccCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCc------eEE--EEecccCccceeeeec
Q 001349 839 TGRGS--ILHLIQQIREHTKAVTGLAILQS-GEMLYSGSLDKTARVWSIGNEE------IHC--VQVHDIKDQIQNLAVS 907 (1094)
Q Consensus 839 d~~t~--~~~~~~~l~~H~~~V~sv~fspd-g~~LaSgs~DgtI~vWdi~~~~------~~~--~~~~~~~~~V~~v~~~ 907 (1094)
|+.+. ....+..+.+|.+.|++++|+|+ +++|++++.||+|++||+.+++ ... .....+...|.++.
T Consensus 95 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-- 172 (416)
T 2pm9_A 95 STNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLA-- 172 (416)
T ss_dssp CCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEE--
T ss_pred ecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEE--
Confidence 99871 11478889999999999999998 8999999999999999999874 111 11234667788877
Q ss_pred CceEEEeeC-CCeEEEEEeCCeEEEEcC------------------CCCceEEEEeCC---EEEEEEcCC---eEEEEEC
Q 001349 908 NSILCFIPQ-GAGIKVHLRNGKTKLLNS------------------SKYPKCLALVQG---KVYCGCQDG---AIQEIDL 962 (1094)
Q Consensus 908 ~~~~~fspd-g~~l~~~~~~g~i~l~~~------------------~~~v~~l~~s~~---~l~sgs~Dg---~I~iwDl 962 (1094)
|+|+ +..++++..++.+++|+. ...+.++.|+++ .+++++.|+ .|++||+
T Consensus 173 -----~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~ 247 (416)
T 2pm9_A 173 -----WNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDL 247 (416)
T ss_dssp -----ECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEET
T ss_pred -----eCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeC
Confidence 9999 788899999999999984 356889999863 699999999 9999999
Q ss_pred CCCc-eeEEeccceeec-CCCCCeEEEEEeC-CccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC---E
Q 001349 963 ATGT-FATIQTGHRKLL-GKANPVHALQVHN-GLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE---L 1035 (1094)
Q Consensus 963 ~~~~-~~~~~~~~~~~~-~h~~~V~sl~fs~-~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd---~ 1035 (1094)
+++. .. ..+. +|...|++++|+| ++.++++++.|+ .|++||+.+++.+..+. |...|.+++|+|+ +
T Consensus 248 ~~~~~~~------~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg-~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~ 320 (416)
T 2pm9_A 248 RNANTPL------QTLNQGHQKGILSLDWCHQDEHLLLSSGRDN-TVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDL 320 (416)
T ss_dssp TSTTSCS------BCCCSCCSSCEEEEEECSSCSSCEEEEESSS-EEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTE
T ss_pred CCCCCCc------EEeecCccCceeEEEeCCCCCCeEEEEeCCC-CEEEeeCCCCccceeecCCCCceEEEEECCCCCCE
Confidence 9874 33 4555 7899999999999 999999999997 99999999999999887 6788999999996 7
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEe----------------------------------cccCCcceEEEEEcCCCCEEEE
Q 001349 1036 VYLGCKGGTVEIWDQKRQIRIETL----------------------------------QTGTSGKVQCMALDDNEEFLVI 1081 (1094)
Q Consensus 1036 l~sgs~dg~I~vwd~~t~~~~~~l----------------------------------~~~h~~~I~~l~~Spdg~~L~s 1081 (1094)
+++++.||.|++||+.++...... ...|...+++++|+|||++|++
T Consensus 321 l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~ 400 (416)
T 2pm9_A 321 FACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQI 400 (416)
T ss_dssp EEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECB
T ss_pred EEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEE
Confidence 999999999999999876532211 0115678889999999999999
Q ss_pred EeCCCcEEEEeCC
Q 001349 1082 GTSDGRIQAWGLS 1094 (1094)
Q Consensus 1082 gs~DG~I~iWdls 1094 (1094)
|+.||+|+||++.
T Consensus 401 ~~~d~~v~~w~~~ 413 (416)
T 2pm9_A 401 TPDGKGVSITNPK 413 (416)
T ss_dssp CTTSSCBCCBCCC
T ss_pred eCCCCeEEEEEec
Confidence 9999999999974
No 28
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=6.4e-31 Score=297.22 Aligned_cols=300 Identities=12% Similarity=0.123 Sum_probs=252.1
Q ss_pred cccccccccCcEEEEeeCCCCeEEEeCCc--ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcc-eeEEE
Q 001349 776 RKYSPLAFEMVKVLSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSIL-HLIQQ 850 (1094)
Q Consensus 776 ~~~~~~~~d~~~l~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~-~~~~~ 850 (1094)
+....+++||..++++..++.+..|.... ......+|.+.|++++|+|+ ++++++ ||.|++||+.++.. ..+..
T Consensus 12 v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~ 90 (337)
T 1gxr_A 12 AYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQ 90 (337)
T ss_dssp CCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEE
T ss_pred eeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeec
Confidence 34567888999999988888777776552 22334579999999999997 888888 99999999987621 23333
Q ss_pred ec--ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEE-EEecccCccceeeeecCceEEEeeCCCeEEEEEeCC
Q 001349 851 IR--EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHC-VQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNG 927 (1094)
Q Consensus 851 l~--~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~-~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g 927 (1094)
+. +|...|++++|+|++++|++++.||+|++||+.+++... .....+...+.++. |+|+++.+++++.+|
T Consensus 91 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~-------~~~~~~~l~~~~~dg 163 (337)
T 1gxr_A 91 LDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALA-------ISPDSKVCFSCCSDG 163 (337)
T ss_dssp EECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEE-------ECTTSSEEEEEETTS
T ss_pred ccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEE-------ECCCCCEEEEEeCCC
Confidence 33 799999999999999999999999999999999876323 33345667788877 999999999999999
Q ss_pred eEEEEcC------------CCCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCc
Q 001349 928 KTKLLNS------------SKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGL 993 (1094)
Q Consensus 928 ~i~l~~~------------~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~ 993 (1094)
.+.+|+. ...+.++.+++ ..+++++.||.|++||+++++....+ .|...+.+++|+|++
T Consensus 164 ~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-------~~~~~v~~~~~s~~~ 236 (337)
T 1gxr_A 164 NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-------DFTSQIFSLGYCPTG 236 (337)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-------ECSSCEEEEEECTTS
T ss_pred cEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee-------cCCCceEEEEECCCC
Confidence 9999984 45688999975 47999999999999999998876432 356789999999999
Q ss_pred cEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEE
Q 001349 994 VYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMA 1071 (1094)
Q Consensus 994 ~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~ 1071 (1094)
.++++++.++ .|++||+.++.......|...+.+++|+|+ ++++++.||.|++||+.+++.+... .|...|++++
T Consensus 237 ~~l~~~~~~~-~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~--~~~~~v~~~~ 313 (337)
T 1gxr_A 237 EWLAVGMESS-NVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS--KESSSVLSCD 313 (337)
T ss_dssp SEEEEEETTS-CEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE--ECSSCEEEEE
T ss_pred CEEEEEcCCC-cEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe--cCCCcEEEEE
Confidence 9999999886 999999999887666568899999999998 8999999999999999999988665 5888999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEeC
Q 001349 1072 LDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1072 ~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
|+|++++|++++.||.|++|++
T Consensus 314 ~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 314 ISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp ECTTSCEEEEEETTSCEEEEEE
T ss_pred ECCCCCEEEEecCCCeEEEEEE
Confidence 9999999999999999999996
No 29
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1e-30 Score=298.88 Aligned_cols=243 Identities=16% Similarity=0.273 Sum_probs=210.5
Q ss_pred ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 001349 805 LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVW 882 (1094)
Q Consensus 805 ~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vW 882 (1094)
....+.+|.+.|++++|+|+ +|++|+.||+|++||..++ ..+..+..|...|.+++|+|+|++|++|+.|++|++|
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw 124 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTT--NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC--CEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC--CcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 35678899999999999997 9999999999999999998 7888899999999999999999999999999999999
Q ss_pred ECCCCce--E-EEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEe-CCEEEEEEcCCeEE
Q 001349 883 SIGNEEI--H-CVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALV-QGKVYCGCQDGAIQ 958 (1094)
Q Consensus 883 di~~~~~--~-~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s-~~~l~sgs~Dg~I~ 958 (1094)
|+.++.. . ...... |...+.++.|. ++.+++++.|++|+
T Consensus 125 ~~~~~~~~~~~~~~~~~-------------------------------------h~~~v~~~~~~~~~~l~s~s~d~~i~ 167 (340)
T 1got_B 125 NLKTREGNVRVSRELAG-------------------------------------HTGYLSCCRFLDDNQIVTSSGDTTCA 167 (340)
T ss_dssp ETTTCSBSCEEEEEEEC-------------------------------------CSSCEEEEEEEETTEEEEEETTSCEE
T ss_pred ECccCCCcceeEEEecC-------------------------------------CCccEEEEEECCCCcEEEEECCCcEE
Confidence 9987531 1 111112 33344455554 35689999999999
Q ss_pred EEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--E
Q 001349 959 EIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--L 1035 (1094)
Q Consensus 959 iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~ 1035 (1094)
+||+.++... ..+.+|...|.+++|+|++.++++++.|+ +|++||++++.+...+. |...|.+++|+|+ +
T Consensus 168 ~wd~~~~~~~------~~~~~h~~~v~~~~~~~~~~~l~sg~~d~-~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~ 240 (340)
T 1got_B 168 LWDIETGQQT------TTFTGHTGDVMSLSLAPDTRLFVSGACDA-SAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 240 (340)
T ss_dssp EEETTTTEEE------EEECCCSSCEEEEEECTTSSEEEEEETTS-CEEEEETTTCSEEEEECCCSSCEEEEEECTTSSE
T ss_pred EEECCCCcEE------EEEcCCCCceEEEEECCCCCEEEEEeCCC-cEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCE
Confidence 9999999877 56678999999999999999999999997 99999999999999888 7788999999998 8
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEecc-cCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1036 VYLGCKGGTVEIWDQKRQIRIETLQT-GTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1036 l~sgs~dg~I~vwd~~t~~~~~~l~~-~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
+++|+.||+|++||+.+++.+..+.. .+...|++++|+|+|++|++|+.||+|++||+
T Consensus 241 l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~ 299 (340)
T 1got_B 241 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299 (340)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred EEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEc
Confidence 99999999999999999988877741 23347999999999999999999999999996
No 30
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1e-30 Score=311.23 Aligned_cols=289 Identities=18% Similarity=0.252 Sum_probs=241.1
Q ss_pred ccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEecccC
Q 001349 779 SPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHT 855 (1094)
Q Consensus 779 ~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~ 855 (1094)
..+.+++.++++|+.||+|++||.. .....+.+|.+.|++++|+++ .+++|+.||+|++||+.++ ..+..+.+|.
T Consensus 126 ~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~--~~~~~~~~h~ 203 (464)
T 3v7d_B 126 TCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKG--CCTHVFEGHN 203 (464)
T ss_dssp EEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTT--EEEEEECCCS
T ss_pred EEEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCC--cEEEEECCCC
Confidence 3567789999999999999999987 456677899999999999987 9999999999999999999 7889999999
Q ss_pred CCeEEEEEe--cCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEc
Q 001349 856 KAVTGLAIL--QSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN 933 (1094)
Q Consensus 856 ~~V~sv~fs--pdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~ 933 (1094)
+.|.+++|+ ++++++++|+.||+|++||+.++......... .....+. +.|++...... ....
T Consensus 204 ~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~--~~~~~~~-------~~~~~~~~~~~------~~~~ 268 (464)
T 3v7d_B 204 STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEE--HDYPLVF-------HTPEENPYFVG------VLRG 268 (464)
T ss_dssp SCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC--------CCSSEEE-------SCGGGCTTEEE------EECC
T ss_pred CccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCccccccccc--CCcceEe-------eccCCCeEEEE------EccC
Confidence 999999999 47899999999999999999986522211111 1111111 22322211111 1223
Q ss_pred CCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCC
Q 001349 934 SSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSN 1013 (1094)
Q Consensus 934 ~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~ 1013 (1094)
+...+.++...++.+++|+.||.|++||+.+++.. ..+.+|...|.+++|++++.++++++.|| .|++||+.+
T Consensus 269 ~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~sg~~dg-~i~vwd~~~ 341 (464)
T 3v7d_B 269 HMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCL------YILSGHTDRIYSTIYDHERKRCISASMDT-TIRIWDLEN 341 (464)
T ss_dssp CSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEE------EEECCCSSCEEEEEEETTTTEEEEEETTS-CEEEEETTT
T ss_pred ccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE------EEecCCCCCEEEEEEcCCCCEEEEEeCCC-cEEEEECCC
Confidence 56778888888899999999999999999999887 55678899999999999999999999997 999999999
Q ss_pred CeEEEEec-CCCCEEEEEEeCCEEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1014 YNMVGSLP-TLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1014 ~~~~~~~~-~~~~v~~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
++++..+. |...|.++.++++++++|+.||.|++||+.++.....+. |...+..++|+++++++++|+ ||.|++||
T Consensus 342 ~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd 418 (464)
T 3v7d_B 342 GELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYH--HTNLSAITTFYVSDNILVSGS-ENQFNIYN 418 (464)
T ss_dssp TEEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEE--CTTCCCEEEEEECSSEEEEEE-TTEEEEEE
T ss_pred CcEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCceeeeec--CCCCccEEEEEeCCCEEEEec-CCeEEEEE
Confidence 99999997 788999999999999999999999999999988777663 666788899999999999998 99999999
Q ss_pred CC
Q 001349 1093 LS 1094 (1094)
Q Consensus 1093 ls 1094 (1094)
+.
T Consensus 419 ~~ 420 (464)
T 3v7d_B 419 LR 420 (464)
T ss_dssp TT
T ss_pred CC
Confidence 73
No 31
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2e-30 Score=303.99 Aligned_cols=299 Identities=14% Similarity=0.137 Sum_probs=244.5
Q ss_pred cccccccCcEEEEeeCCCCeEEEeCCcc--eeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecc
Q 001349 778 YSPLAFEMVKVLSNGHDSSADFWNHREL--VHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIRE 853 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg~I~vWd~~~~--~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~ 853 (1094)
...+++++.++++++.||.|++||.... ...+..| ..+....|+++ +|++|+.||.|++||+.++ .....+.+
T Consensus 61 ~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~ 137 (420)
T 3vl1_A 61 GNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN--LQREIDQA 137 (420)
T ss_dssp TCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSC--EEEEETTS
T ss_pred ceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCc--ceeeeccc
Confidence 4668889999999999999999999843 2333344 33444466765 9999999999999999988 77888889
Q ss_pred cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEc
Q 001349 854 HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN 933 (1094)
Q Consensus 854 H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~ 933 (1094)
|.+.|++++|+|++++|++|+.||+|++||+.+++.. .....+...|.++. |+|+++.+++++.++.+++|+
T Consensus 138 h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~-~~~~~h~~~v~~~~-------~~~~~~~l~s~~~d~~v~iwd 209 (420)
T 3vl1_A 138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP-RTLIGHRATVTDIA-------IIDRGRNVLSASLDGTIRLWE 209 (420)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCC-EEEECCSSCEEEEE-------EETTTTEEEEEETTSCEEEEE
T ss_pred ccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCc-eEEcCCCCcEEEEE-------EcCCCCEEEEEcCCCcEEEeE
Confidence 9999999999999999999999999999999987632 22345678899888 999999999999999999998
Q ss_pred CC---------------CCceEEEE---------------------eC--CEEEEEEcCCeEEEEECCCCceeEEeccce
Q 001349 934 SS---------------KYPKCLAL---------------------VQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHR 975 (1094)
Q Consensus 934 ~~---------------~~v~~l~~---------------------s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~ 975 (1094)
.. ..+.++.+ ++ ..+++|+.||.|++||++++.....
T Consensus 210 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~----- 284 (420)
T 3vl1_A 210 CGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQ----- 284 (420)
T ss_dssp TTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEE-----
T ss_pred CCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEE-----
Confidence 53 23444444 22 3699999999999999999887643
Q ss_pred eecCCCCCeEEEEEeCCcc-EEEEEECCCCEEEEEECCCCeE-EEEec--CCCCEEEEEEeCC-EEEEEEcCCeEEEEEC
Q 001349 976 KLLGKANPVHALQVHNGLV-YTASTSLDGAAVKMWSTSNYNM-VGSLP--TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQ 1050 (1094)
Q Consensus 976 ~~~~h~~~V~sl~fs~~~~-~las~s~Dg~~I~iwd~~~~~~-~~~~~--~~~~v~~l~~spd-~l~sgs~dg~I~vwd~ 1050 (1094)
...+|...|++++|+|++. ++++++.|| .|++||++++.. +..+. +...+.++.+.++ ++++++.||.|++||+
T Consensus 285 ~~~~~~~~v~~~~~~~~~~~~l~~g~~dg-~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~ 363 (420)
T 3vl1_A 285 LPSKFTCSCNSLTVDGNNANYIYAGYENG-MLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDII 363 (420)
T ss_dssp ECCTTSSCEEEEEECSSCTTEEEEEETTS-EEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEE
T ss_pred cccccCCCceeEEEeCCCCCEEEEEeCCC-eEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEec
Confidence 2346788999999999998 999999987 999999998743 55555 5678888887766 8999999999999998
Q ss_pred CCCc---------EEEEecccCCcceEEEEEcCCCC---EEEEEeCCCcEEEEeCC
Q 001349 1051 KRQI---------RIETLQTGTSGKVQCMALDDNEE---FLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1051 ~t~~---------~~~~l~~~h~~~I~~l~~Spdg~---~L~sgs~DG~I~iWdls 1094 (1094)
.... ....+ .+|.+.|.+++|+|+++ .+++++.+|.+.+|+++
T Consensus 364 ~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 364 SDPESERPAIEFETPTFL-VSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp CCTTCCSCEECTTSCEEE-CCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred cCCCCCccceeccCccEE-ccCCcceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence 7631 12233 46888999999999999 78888899999999974
No 32
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.6e-30 Score=302.11 Aligned_cols=274 Identities=16% Similarity=0.176 Sum_probs=235.3
Q ss_pred eeecccCCCcEEEEEEeCCEEEEEECCCeEEEEecCCCc----ceeEEEecccCCCeEEEEEecC----C---CEEEEEe
Q 001349 806 VHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSI----LHLIQQIREHTKAVTGLAILQS----G---EMLYSGS 874 (1094)
Q Consensus 806 ~~~~~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~----~~~~~~l~~H~~~V~sv~fspd----g---~~LaSgs 874 (1094)
...+.+|.+.|++++|+|++|++|+.||+|++||+.++. ...+..+.+|...|++++|+|+ | ++|++++
T Consensus 9 ~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~ 88 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS 88 (397)
T ss_dssp EEESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred hhhhhhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEc
Confidence 456789999999999999999999999999999999883 2368888899999999999999 9 9999999
Q ss_pred CCCcEEEEECCCCce----EEEEeccc-----CccceeeeecCceEEEe----eCCCe-EEEEEeCCeEEEEcCCC----
Q 001349 875 LDKTARVWSIGNEEI----HCVQVHDI-----KDQIQNLAVSNSILCFI----PQGAG-IKVHLRNGKTKLLNSSK---- 936 (1094)
Q Consensus 875 ~DgtI~vWdi~~~~~----~~~~~~~~-----~~~V~~v~~~~~~~~fs----pdg~~-l~~~~~~g~i~l~~~~~---- 936 (1094)
.||+|++||+.+++. .......+ ...|.++. |+ |++.. +++++.+|.+++|+...
T Consensus 89 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 161 (397)
T 1sq9_A 89 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALK-------WGASNDRLLSHRLVATDVKGTTYIWKFHPFADE 161 (397)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEE-------EECCC----CEEEEEEETTSCEEEEEEESSSSH
T ss_pred CCCCEEEEEccCCcccccccceeecccccccCCCcEEEEE-------EeeccCCCCceEEEEEeCCCcEEEEeCCccccc
Confidence 999999999988762 02222333 47788887 89 99999 99999999999987432
Q ss_pred --------------------------CceEEEEeCC-EEEEEEcCCeEEEEECCCCceeEEeccceeecC---C---CCC
Q 001349 937 --------------------------YPKCLALVQG-KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLG---K---ANP 983 (1094)
Q Consensus 937 --------------------------~v~~l~~s~~-~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~---h---~~~ 983 (1094)
.+.++.|+++ .+++|+.||.|++||+++++.. ..+.. | ...
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------~~~~~~~~h~~~~~~ 235 (397)
T 1sq9_A 162 SNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPL------YNFESQHSMINNSNS 235 (397)
T ss_dssp HHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEE------EEEECCC---CCCCC
T ss_pred cccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCcee------EEEeccccccccCCc
Confidence 3667888753 8899999999999999998877 34555 7 889
Q ss_pred eEEEEEeCCccEEEEEECC---CCEEEEEECCCCeEEEEec--------------CCCCEEEEEEeCC--EEEEEEcCCe
Q 001349 984 VHALQVHNGLVYTASTSLD---GAAVKMWSTSNYNMVGSLP--------------TLSEVRAMVVSSE--LVYLGCKGGT 1044 (1094)
Q Consensus 984 V~sl~fs~~~~~las~s~D---g~~I~iwd~~~~~~~~~~~--------------~~~~v~~l~~spd--~l~sgs~dg~ 1044 (1094)
|.+++|+|++.++++++.| | .|++||+++++.+..+. |...|.+++|+|+ ++++|+.||.
T Consensus 236 i~~i~~~~~~~~l~~~~~d~~~g-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 314 (397)
T 1sq9_A 236 IRSVKFSPQGSLLAIAHDSNSFG-CITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGK 314 (397)
T ss_dssp EEEEEECSSTTEEEEEEEETTEE-EEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSE
T ss_pred cceEEECCCCCEEEEEecCCCCc-eEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCe
Confidence 9999999999999999988 7 99999999999888886 5788999999988 8999999999
Q ss_pred EEEEECCCCcEEEEecc-----cC---------------CcceEEEEEcCCC----------CEEEEEeCCCcEEEEeC
Q 001349 1045 VEIWDQKRQIRIETLQT-----GT---------------SGKVQCMALDDNE----------EFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1045 I~vwd~~t~~~~~~l~~-----~h---------------~~~I~~l~~Spdg----------~~L~sgs~DG~I~iWdl 1093 (1094)
|++||+.+++.+..+.. +| ...|++++|+|+| ++|++|+.||.|++|++
T Consensus 315 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~ 393 (397)
T 1sq9_A 315 LRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE 393 (397)
T ss_dssp EEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred EEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEc
Confidence 99999999999999841 56 8899999999998 79999999999999997
No 33
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.1e-30 Score=300.25 Aligned_cols=278 Identities=14% Similarity=0.120 Sum_probs=228.8
Q ss_pred hccccccccccCcEEEEeeCCCCeEEEeCCc----ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCccee
Q 001349 774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHRE----LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHL 847 (1094)
Q Consensus 774 ~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~----~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~ 847 (1094)
..+....+.+++.++++++.|+.|++||... ....+.+|.+.|++++|+|+ +|++|+.||+|++||+.++....
T Consensus 9 ~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 88 (372)
T 1k8k_C 9 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKP 88 (372)
T ss_dssp SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEE
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeee
Confidence 3455667788999999999999999999873 56778899999999999986 99999999999999999885444
Q ss_pred EEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCce---EEEEecccCccceeeeecCceEEEeeCCCeEEEEE
Q 001349 848 IQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEI---HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHL 924 (1094)
Q Consensus 848 ~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~---~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~ 924 (1094)
...+..|...|++++|+|++++|++++.||.|++||++.+.. .......+...|.++. |+|+++
T Consensus 89 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~-------~~~~~~------ 155 (372)
T 1k8k_C 89 TLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLD-------WHPNSV------ 155 (372)
T ss_dssp EEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEE-------ECTTSS------
T ss_pred eEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEE-------EcCCCC------
Confidence 555678999999999999999999999999999999988752 1122234456666666 666665
Q ss_pred eCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECC------------------CCceeEEeccceeecCCCCCeEE
Q 001349 925 RNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLA------------------TGTFATIQTGHRKLLGKANPVHA 986 (1094)
Q Consensus 925 ~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~------------------~~~~~~~~~~~~~~~~h~~~V~s 986 (1094)
.+++|+.||.|++||+. ++... ..+.+|...|.+
T Consensus 156 ----------------------~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~v~~ 207 (372)
T 1k8k_C 156 ----------------------LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELM------FESSSSCGWVHG 207 (372)
T ss_dssp ----------------------EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEE------EECCCCSSCEEE
T ss_pred ----------------------EEEEEcCCCCEEEEEcccccccccccccccccccchhhhe------EecCCCCCeEEE
Confidence 48889999999999964 44544 455688899999
Q ss_pred EEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC-EEEEEEcCCeEEEEECCC--Cc--------
Q 001349 987 LQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKR--QI-------- 1054 (1094)
Q Consensus 987 l~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t--~~-------- 1054 (1094)
++|+|++.++++++.|+ .|++||+++++++..+. |...+.+++|+|+ .+++++.||.|++||+.+ ++
T Consensus 208 ~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~ 286 (372)
T 1k8k_C 208 VCFSANGSRVAWVSHDS-TVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLD 286 (372)
T ss_dssp EEECSSSSEEEEEETTT-EEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCC
T ss_pred EEECCCCCEEEEEeCCC-EEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccC
Confidence 99999999999999997 99999999999998888 6678999999998 444444999999999987 42
Q ss_pred ------------------------EE------EEecccCCcceEEEEEc-CCC---CEEEEEeCCCcEEEEeC
Q 001349 1055 ------------------------RI------ETLQTGTSGKVQCMALD-DNE---EFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1055 ------------------------~~------~~l~~~h~~~I~~l~~S-pdg---~~L~sgs~DG~I~iWdl 1093 (1094)
.. ..+..+|.+.|++++|+ ++| ++|++|+.||+|++||+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~ 359 (372)
T 1k8k_C 287 VPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 359 (372)
T ss_dssp CC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred ccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEe
Confidence 10 33335899999999966 676 99999999999999996
No 34
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.98 E-value=1.6e-30 Score=291.14 Aligned_cols=247 Identities=16% Similarity=0.208 Sum_probs=201.4
Q ss_pred eecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEec--CCCEEEEEeCCCcEEEE
Q 001349 807 HVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQ--SGEMLYSGSLDKTARVW 882 (1094)
Q Consensus 807 ~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fsp--dg~~LaSgs~DgtI~vW 882 (1094)
.++.+|.+.|++++|+|+ +|++|+.||+|+|||+.++....+.++.+|.+.|++++|++ +|++|+||+.||+|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 457799999999999996 99999999999999998654467889999999999999986 48999999999999999
Q ss_pred ECCCCceEE-EEecccCccceeeeecCceEEEeeC--CCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEE
Q 001349 883 SIGNEEIHC-VQVHDIKDQIQNLAVSNSILCFIPQ--GAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQE 959 (1094)
Q Consensus 883 di~~~~~~~-~~~~~~~~~V~~v~~~~~~~~fspd--g~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~i 959 (1094)
|+.++.... .....+...|.++. |+|+ |. .+++|+.||.|++
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~-------~~p~~~g~----------------------------~l~s~s~d~~v~~ 127 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQ-------WAPHEYGP----------------------------MLLVASSDGKVSV 127 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEE-------ECCGGGCS----------------------------EEEEEETTSEEEE
T ss_pred EcCCCceEEEEEeecCCCceeEEE-------eCcCCCCc----------------------------EEEEEECCCcEEE
Confidence 998864222 12223455566665 5554 33 4889999999999
Q ss_pred EECCCCceeEEeccceeecCCCCCeEEEEEeCC-------------ccEEEEEECCCCEEEEEECCCCe----EEEEec-
Q 001349 960 IDLATGTFATIQTGHRKLLGKANPVHALQVHNG-------------LVYTASTSLDGAAVKMWSTSNYN----MVGSLP- 1021 (1094)
Q Consensus 960 wDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~-------------~~~las~s~Dg~~I~iwd~~~~~----~~~~~~- 1021 (1094)
||++++.... ...+.+|...|.+++|+|+ +.++++++.|+ +|++||++++. ....+.
T Consensus 128 wd~~~~~~~~----~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~-~v~lwd~~~~~~~~~~~~~l~~ 202 (297)
T 2pm7_B 128 VEFKENGTTS----PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN-LVKIWKYNSDAQTYVLESTLEG 202 (297)
T ss_dssp EEBCSSSCBC----CEEEECCSSCEEEEEECCCC------------CCEEEEEETTS-CEEEEEEETTTTEEEEEEEECC
T ss_pred EEecCCCcee----eeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCC-cEEEEEEcCCCceEEEEEEecC
Confidence 9998764221 1356789999999999986 46899999997 99999998765 555666
Q ss_pred CCCCEEEEEEeCC-----EEEEEEcCCeEEEEECCCCc---EEEEec-ccCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1022 TLSEVRAMVVSSE-----LVYLGCKGGTVEIWDQKRQI---RIETLQ-TGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1022 ~~~~v~~l~~spd-----~l~sgs~dg~I~vwd~~t~~---~~~~l~-~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
|...|.+++|+|+ ++++|+.|++|+|||+.++. ....+. .+|...|++++|+|+|++|++++.||+|++|+
T Consensus 203 H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~ 282 (297)
T 2pm7_B 203 HSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282 (297)
T ss_dssp CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred CCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 7789999999995 79999999999999988743 122221 36788999999999999999999999999998
Q ss_pred C
Q 001349 1093 L 1093 (1094)
Q Consensus 1093 l 1093 (1094)
.
T Consensus 283 ~ 283 (297)
T 2pm7_B 283 E 283 (297)
T ss_dssp E
T ss_pred E
Confidence 5
No 35
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.98 E-value=6.1e-30 Score=314.88 Aligned_cols=307 Identities=14% Similarity=0.166 Sum_probs=249.0
Q ss_pred ccccccccccCcEEEEeeCC----CCeEEEeCCcceeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCccee
Q 001349 775 LRKYSPLAFEMVKVLSNGHD----SSADFWNHRELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHL 847 (1094)
Q Consensus 775 ~~~~~~~~~d~~~l~s~s~d----g~I~vWd~~~~~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~ 847 (1094)
.+....+.+++.++++++.+ +.|.+||.......+.+|.+.|++++|+|+ .+++|+.||+|++||..++ +.
T Consensus 118 ~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~--~~ 195 (615)
T 1pgu_A 118 PISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF--KF 195 (615)
T ss_dssp CEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB--EE
T ss_pred cEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc--ce
Confidence 34456678899999999988 799999987888888999999999999996 8999999999999999988 78
Q ss_pred EEEecccCC---CeEEEEEecC-CCEEEEEeCCCcEEEEECCCCceEEEEec---ccCccceeeeecCceEEEeeCCCeE
Q 001349 848 IQQIREHTK---AVTGLAILQS-GEMLYSGSLDKTARVWSIGNEEIHCVQVH---DIKDQIQNLAVSNSILCFIPQGAGI 920 (1094)
Q Consensus 848 ~~~l~~H~~---~V~sv~fspd-g~~LaSgs~DgtI~vWdi~~~~~~~~~~~---~~~~~V~~v~~~~~~~~fspdg~~l 920 (1094)
+..+.+|.. .|++++|+|+ +++|++++.||+|++||+.+++....... .+...|.++. |+ ++..+
T Consensus 196 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~-------~~-~~~~l 267 (615)
T 1pgu_A 196 SASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALS-------WL-DSQKF 267 (615)
T ss_dssp EEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEE-------ES-SSSEE
T ss_pred eeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEE-------Ec-CCCEE
Confidence 899999999 9999999999 99999999999999999998863333213 6778888887 77 77777
Q ss_pred EEEEeCCeEEEEcCC----------------CCceEEEE-eCCEEEEEEcCCeEEEEECCCCceeEEe------------
Q 001349 921 KVHLRNGKTKLLNSS----------------KYPKCLAL-VQGKVYCGCQDGAIQEIDLATGTFATIQ------------ 971 (1094)
Q Consensus 921 ~~~~~~g~i~l~~~~----------------~~v~~l~~-s~~~l~sgs~Dg~I~iwDl~~~~~~~~~------------ 971 (1094)
+++..++.+++|+.. ..+.++.+ .++.+++|+.||.|++||+.+++....+
T Consensus 268 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 347 (615)
T 1pgu_A 268 ATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV 347 (615)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET
T ss_pred EEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe
Confidence 777777777777742 12223333 2234555555555555554322111000
Q ss_pred --------------------------------------------------------------------------------
Q 001349 972 -------------------------------------------------------------------------------- 971 (1094)
Q Consensus 972 -------------------------------------------------------------------------------- 971 (1094)
T Consensus 348 ~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 427 (615)
T 1pgu_A 348 NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDD 427 (615)
T ss_dssp TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTS
T ss_pred cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCC
Confidence
Q ss_pred --------------------------------------cc-----------c--eeecCCCCCeEEEEEeCCccEEEEEE
Q 001349 972 --------------------------------------TG-----------H--RKLLGKANPVHALQVHNGLVYTASTS 1000 (1094)
Q Consensus 972 --------------------------------------~~-----------~--~~~~~h~~~V~sl~fs~~~~~las~s 1000 (1094)
.+ . ..+.+|...|++++|+|++.++++++
T Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 507 (615)
T 1pgu_A 428 DLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGD 507 (615)
T ss_dssp EEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEE
T ss_pred ceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcC
Confidence 00 0 23456888999999999999999999
Q ss_pred CCCCEEEEEECCCCeEEEEec--CCCCEEEEEEeC----------C--EEEEEEcCCeEEEEECCCC-cEEEEecccCCc
Q 001349 1001 LDGAAVKMWSTSNYNMVGSLP--TLSEVRAMVVSS----------E--LVYLGCKGGTVEIWDQKRQ-IRIETLQTGTSG 1065 (1094)
Q Consensus 1001 ~Dg~~I~iwd~~~~~~~~~~~--~~~~v~~l~~sp----------d--~l~sgs~dg~I~vwd~~t~-~~~~~l~~~h~~ 1065 (1094)
.|| .|++||+.+++.+..+. |...|++++|+| + ++++|+.||.|++||+.++ +++..+ .+|.+
T Consensus 508 ~dg-~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~h~~ 585 (615)
T 1pgu_A 508 VMG-KILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL-NAHKD 585 (615)
T ss_dssp TTS-CEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEET-TSSTT
T ss_pred CCC-eEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhh-hcCcc
Confidence 997 99999999999998887 788999999999 7 8999999999999999998 677777 68999
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1066 KVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1066 ~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
.|++++|+|+++ |++++.||+|++|++.
T Consensus 586 ~v~~l~~s~~~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 586 GVNNLLWETPST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp CEEEEEEEETTE-EEEEETTSCEEEEEEC
T ss_pred ceEEEEEcCCCC-eEEecCCceEEEEeee
Confidence 999999999999 9999999999999974
No 36
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.98 E-value=4.9e-31 Score=312.13 Aligned_cols=275 Identities=15% Similarity=0.126 Sum_probs=223.4
Q ss_pred ecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEec-CCCEEEEEeCCCcEEEEE
Q 001349 808 VDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQ-SGEMLYSGSLDKTARVWS 883 (1094)
Q Consensus 808 ~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fsp-dg~~LaSgs~DgtI~vWd 883 (1094)
...+|...|+|++|+|. +||+|+.||+|+|||+.++.......+.+|.+.|++|+|+| ++++|+|||.||+|++||
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd 193 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD 193 (435)
T ss_dssp EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence 44578899999999983 89999999999999998876566677789999999999998 789999999999999999
Q ss_pred CCCCceEEEEec-ccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC-----------CCCceEEEEeC---CEE
Q 001349 884 IGNEEIHCVQVH-DIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS-----------SKYPKCLALVQ---GKV 948 (1094)
Q Consensus 884 i~~~~~~~~~~~-~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~-----------~~~v~~l~~s~---~~l 948 (1094)
++++....+... .....+.++. |+|++..+++++.+|.+++|+. ...|.++.|++ ..+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~ 266 (435)
T 4e54_B 194 FKGNILRVFASSDTINIWFCSLD-------VSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFL 266 (435)
T ss_dssp TTSCEEEEEECCSSCSCCCCCEE-------EETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEE
T ss_pred ccCCceeEEeccCCCCccEEEEE-------ECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEE
Confidence 998754443332 2334455665 9999999999999999999984 45789999985 358
Q ss_pred EEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CC----
Q 001349 949 YCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TL---- 1023 (1094)
Q Consensus 949 ~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~---- 1023 (1094)
++|+.|+.|++||++++.....+ ....+|...|++++|+|++.++++++.|| +|++||+.++.....+. |.
T Consensus 267 ~s~s~d~~v~iwd~~~~~~~~~~---~~~~~h~~~v~~~~~spdg~~l~s~~~D~-~i~iwd~~~~~~~~~~~~~~~~~~ 342 (435)
T 4e54_B 267 ATASVDQTVKIWDLRQVRGKASF---LYSLPHRHPVNAACFSPDGARLLTTDQKS-EIRVYSASQWDCPLGLIPHPHRHF 342 (435)
T ss_dssp EEEETTSBCCEEETTTCCSSSCC---SBCCBCSSCEEECCBCTTSSEEEEEESSS-CEEEEESSSSSSEEEECCCCCCCC
T ss_pred EEecCcceeeEEecccccccceE---EEeeeccccccceeECCCCCeeEEEcCCC-EEEEEECCCCccceEEeccccccc
Confidence 89999999999999987654221 23357899999999999999999999997 99999999988776654 21
Q ss_pred --CCEEEEEEeCC--EEEEEE------------cCCeEEEEECCCCcEEEEecccCCcceEEE-EEcCCCCEEEEEeCCC
Q 001349 1024 --SEVRAMVVSSE--LVYLGC------------KGGTVEIWDQKRQIRIETLQTGTSGKVQCM-ALDDNEEFLVIGTSDG 1086 (1094)
Q Consensus 1024 --~~v~~l~~spd--~l~sgs------------~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l-~~Spdg~~L~sgs~DG 1086 (1094)
..+....|+|+ .+++++ .++.|++||..+++.+..+..+|...|.++ +|+|+|++|++|+ |+
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~ 421 (435)
T 4e54_B 343 QHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GY 421 (435)
T ss_dssp SSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SS
T ss_pred ccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CC
Confidence 12334456655 444443 346899999999999999877888889887 6999999999876 88
Q ss_pred cEEEEeCC
Q 001349 1087 RIQAWGLS 1094 (1094)
Q Consensus 1087 ~I~iWdls 1094 (1094)
+|+||++.
T Consensus 422 ~i~iW~~~ 429 (435)
T 4e54_B 422 HILIWSQQ 429 (435)
T ss_dssp EEEECCCC
T ss_pred cEEEEECC
Confidence 99999974
No 37
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.98 E-value=7.7e-30 Score=300.34 Aligned_cols=270 Identities=15% Similarity=0.264 Sum_probs=221.3
Q ss_pred ccccccCcEEEEeeCCCCeEEEeCCc--ceee--cccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEec
Q 001349 779 SPLAFEMVKVLSNGHDSSADFWNHRE--LVHV--DSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIR 852 (1094)
Q Consensus 779 ~~~~~d~~~l~s~s~dg~I~vWd~~~--~~~~--~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~ 852 (1094)
..++. .+.|++| .|++|+|||..+ .... ..+|.+.|++|+|+|+ +|++|+.||+|+|||+.++ +.+..+.
T Consensus 111 l~wS~-~n~lAvg-ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~--~~~~~~~ 186 (420)
T 4gga_A 111 VDWSS-GNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ--KRLRNMT 186 (420)
T ss_dssp EEECT-TSEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT--EEEEEEC
T ss_pred EEECC-CCEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC--cEEEEEe
Confidence 33443 3456655 599999999873 3333 3468889999999997 9999999999999999999 8899999
Q ss_pred ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEE
Q 001349 853 EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLL 932 (1094)
Q Consensus 853 ~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~ 932 (1094)
+|...|.++.+ ++.+|++|+.|+++++||.............+...+..+. ++|+|.
T Consensus 187 ~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~-------~~~~g~-------------- 243 (420)
T 4gga_A 187 SHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLR-------WAPDGR-------------- 243 (420)
T ss_dssp CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEE-------ECTTSS--------------
T ss_pred CCCCceEEEee--CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeee-------ecCCCC--------------
Confidence 99999998877 4689999999999999999886544444445566666665 666666
Q ss_pred cCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCc-cEEEE--EECCCCEEEEE
Q 001349 933 NSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGL-VYTAS--TSLDGAAVKMW 1009 (1094)
Q Consensus 933 ~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~-~~las--~s~Dg~~I~iw 1009 (1094)
.+++++.||.|++||..+++..... ......|...|.+++|+|++ .++++ ++.|+ +|++|
T Consensus 244 --------------~l~s~~~D~~v~i~~~~~~~~~~~~--~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~-~I~iw 306 (420)
T 4gga_A 244 --------------HLASGGNDNLVNVWPSAPGEGGWVP--LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR-HIRIW 306 (420)
T ss_dssp --------------EEEEEETTSCEEEEESSCCSSCSCC--SEEECCCSSCEEEEEECTTCTTEEEEEECTTTC-EEEEE
T ss_pred --------------eeeeeeccccceEEeecccccccee--eeeecccCCceeeeeeCCCcccEEEEEeecCCC-EEEEE
Confidence 4888999999999999887643211 14566788999999999754 34444 34564 99999
Q ss_pred ECCCCeEEEEecCCCCEEEEEEeCC--EEEEEE--cCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCC
Q 001349 1010 STSNYNMVGSLPTLSEVRAMVVSSE--LVYLGC--KGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSD 1085 (1094)
Q Consensus 1010 d~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs--~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~D 1085 (1094)
|+.++.+...+.++..+.++.|+++ .+++++ .||.|+|||+.+++++..+ .+|.+.|++++|+|||++|+||+.|
T Consensus 307 d~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l-~gH~~~V~~l~~spdg~~l~S~s~D 385 (420)
T 4gga_A 307 NVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL-KGHTSRVLSLTMSPDGATVASAAAD 385 (420)
T ss_dssp ETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSCEEEEETT
T ss_pred eCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEE-cCCCCCEEEEEEcCCCCEEEEEecC
Confidence 9999999999999999999999998 566554 7899999999999999999 5999999999999999999999999
Q ss_pred CcEEEEeC
Q 001349 1086 GRIQAWGL 1093 (1094)
Q Consensus 1086 G~I~iWdl 1093 (1094)
|+|+|||+
T Consensus 386 ~tvriWdv 393 (420)
T 4gga_A 386 ETLRLWRC 393 (420)
T ss_dssp TEEEEECC
T ss_pred CeEEEEEC
Confidence 99999997
No 38
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.98 E-value=6.1e-30 Score=299.20 Aligned_cols=270 Identities=16% Similarity=0.239 Sum_probs=227.1
Q ss_pred cccccccCcEEEEeeCCCCeEEEeCCc--ceeecc-cCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEec
Q 001349 778 YSPLAFEMVKVLSNGHDSSADFWNHRE--LVHVDS-SENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIR 852 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg~I~vWd~~~--~~~~~~-~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~ 852 (1094)
...+.+++..+++++.|+.|++||... ...... .|.+.|++++|+|+ +|++|+.||.|++||+.++ ..+..+.
T Consensus 96 ~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~ 173 (401)
T 4aez_A 96 LNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ--TKLRTMA 173 (401)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC--CEEEEEC
T ss_pred EEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC--eEEEEec
Confidence 344666678899999999999999873 333333 48999999999996 9999999999999999998 7888999
Q ss_pred ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEE
Q 001349 853 EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLL 932 (1094)
Q Consensus 853 ~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~ 932 (1094)
+|...|.+++| +++++++|+.||+|++||++...........+...|.++. |+|++.
T Consensus 174 ~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~-------------- 230 (401)
T 4aez_A 174 GHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLA-------WRSDGL-------------- 230 (401)
T ss_dssp CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEE-------ECTTSS--------------
T ss_pred CCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEE-------EcCCCC--------------
Confidence 99999999999 5679999999999999999865433444445666777776 777665
Q ss_pred cCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCc-cEEEEEE--CCCCEEEEE
Q 001349 933 NSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGL-VYTASTS--LDGAAVKMW 1009 (1094)
Q Consensus 933 ~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~-~~las~s--~Dg~~I~iw 1009 (1094)
.+++|+.||.|++||++++... ..+.+|...|.+++|+|++ .++++++ .|+ .|++|
T Consensus 231 --------------~l~s~~~d~~v~iwd~~~~~~~------~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~-~i~i~ 289 (401)
T 4aez_A 231 --------------QLASGGNDNVVQIWDARSSIPK------FTKTNHNAAVKAVAWCPWQSNLLATGGGTMDK-QIHFW 289 (401)
T ss_dssp --------------EEEEEETTSCEEEEETTCSSEE------EEECCCSSCCCEEEECTTSTTEEEEECCTTTC-EEEEE
T ss_pred --------------EEEEEeCCCeEEEccCCCCCcc------EEecCCcceEEEEEECCCCCCEEEEecCCCCC-EEEEE
Confidence 4889999999999999998876 4566788999999999965 5556654 565 99999
Q ss_pred ECCCCeEEEEecCCCCEEEEEEeCC--EEEE--EEcCCeEEEEECCCCcEEEE--ecccCCcceEEEEEcCCCCEEEEEe
Q 001349 1010 STSNYNMVGSLPTLSEVRAMVVSSE--LVYL--GCKGGTVEIWDQKRQIRIET--LQTGTSGKVQCMALDDNEEFLVIGT 1083 (1094)
Q Consensus 1010 d~~~~~~~~~~~~~~~v~~l~~spd--~l~s--gs~dg~I~vwd~~t~~~~~~--l~~~h~~~I~~l~~Spdg~~L~sgs 1083 (1094)
|+.+++++..+.++..+.+++|+|+ ++++ |+.||.|++||+.+++.... + .+|.+.|++++|+|+|++|++++
T Consensus 290 d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~-~~h~~~v~~~~~s~dg~~l~s~~ 368 (401)
T 4aez_A 290 NAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDI-PAHDTRVLYSALSPDGRILSTAA 368 (401)
T ss_dssp ETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEE-ECCSSCCCEEEECTTSSEEEEEC
T ss_pred ECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEe-cCCCCCEEEEEECCCCCEEEEEe
Confidence 9999999999999999999999998 6777 44899999999998765544 4 48999999999999999999999
Q ss_pred CCCcEEEEeCC
Q 001349 1084 SDGRIQAWGLS 1094 (1094)
Q Consensus 1084 ~DG~I~iWdls 1094 (1094)
.||+|++|++.
T Consensus 369 ~dg~i~iw~~~ 379 (401)
T 4aez_A 369 SDENLKFWRVY 379 (401)
T ss_dssp TTSEEEEEECC
T ss_pred CCCcEEEEECC
Confidence 99999999973
No 39
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.4e-30 Score=331.57 Aligned_cols=314 Identities=10% Similarity=0.105 Sum_probs=229.9
Q ss_pred ccccccccccCcEEEEeeCCCCeEEEeCCccee-ecccCCCcEEEEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEec
Q 001349 775 LRKYSPLAFEMVKVLSNGHDSSADFWNHRELVH-VDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIR 852 (1094)
Q Consensus 775 ~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~~~~-~~~~h~~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~ 852 (1094)
.+....|++++.++|+|+.||+|++|+...... ....|.+.|.+++|+|+ +|++++.|++|++||+.++ +++..+.
T Consensus 19 ~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~--~~~~~~~ 96 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQ--KVLTTVF 96 (902)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEETTTEEEEEETTCEEEEEETTTC--SEEEEEE
T ss_pred CcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcCCCEEEEEECcCeEEEEECCCC--cEEEEEc
Confidence 445677888999999999999999999874332 23458899999999997 8999999999999999998 6777775
Q ss_pred ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEe----------cccCccceeeeecCc-------------
Q 001349 853 EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQV----------HDIKDQIQNLAVSNS------------- 909 (1094)
Q Consensus 853 ~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~----------~~~~~~V~~v~~~~~------------- 909 (1094)
|.+.|++++|+|++++|++|+.||+|++||+.++....... ..|..+|.++++++.
T Consensus 97 -~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~ 175 (902)
T 2oaj_A 97 -VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVT 175 (902)
T ss_dssp -CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCE
T ss_pred -CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCc
Confidence 77899999999999999999999999999999876422111 224455666554331
Q ss_pred ----------------------------------------eEEEeeCCCeEEEEEeCCeEEEEcCC--------------
Q 001349 910 ----------------------------------------ILCFIPQGAGIKVHLRNGKTKLLNSS-------------- 935 (1094)
Q Consensus 910 ----------------------------------------~~~fspdg~~l~~~~~~g~i~l~~~~-------------- 935 (1094)
.++|+|+|..+++++.||.+++|+..
T Consensus 176 vlWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~ 255 (902)
T 2oaj_A 176 LTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETE 255 (902)
T ss_dssp EEEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSC
T ss_pred EEEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccc
Confidence 24578888888888888888888641
Q ss_pred ----------------CCceEEEEe----CC---EEEEEEcC-----CeEEEEE--------------------------
Q 001349 936 ----------------KYPKCLALV----QG---KVYCGCQD-----GAIQEID-------------------------- 961 (1094)
Q Consensus 936 ----------------~~v~~l~~s----~~---~l~sgs~D-----g~I~iwD-------------------------- 961 (1094)
..|.+++|. ++ .+++|+.| +.+.+|+
T Consensus 256 ~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 335 (902)
T 2oaj_A 256 INVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMK 335 (902)
T ss_dssp TTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEE
T ss_pred cCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceE
Confidence 125566663 21 24444333 1444444
Q ss_pred ---------------------------------------------CCCCceeEE-e------------------------
Q 001349 962 ---------------------------------------------LATGTFATI-Q------------------------ 971 (1094)
Q Consensus 962 ---------------------------------------------l~~~~~~~~-~------------------------ 971 (1094)
+.+|..... .
T Consensus 336 ~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~ 415 (902)
T 2oaj_A 336 IFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNK 415 (902)
T ss_dssp EECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHH
T ss_pred EEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHH
Confidence 222211100 0
Q ss_pred ----------ccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEE----EE--e------cCCCCEEEE
Q 001349 972 ----------TGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMV----GS--L------PTLSEVRAM 1029 (1094)
Q Consensus 972 ----------~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~----~~--~------~~~~~v~~l 1029 (1094)
.....+.+|...+.+++|+|++.++++++.|+ +|++||+.++... .. + .|...|.++
T Consensus 416 ~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~Dg-tVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~sv 494 (902)
T 2oaj_A 416 LWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNG-SVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKI 494 (902)
T ss_dssp HHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTS-EEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEE
T ss_pred HHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCC-cEEEEECCCccccCCceEEeechhhcCCCCCCceeEE
Confidence 00001122333344445578899999999997 9999999876421 11 1 366789999
Q ss_pred EEeCC--EEEEEEcCCeEEEEECCCCc---------------------------------------------EEEEeccc
Q 001349 1030 VVSSE--LVYLGCKGGTVEIWDQKRQI---------------------------------------------RIETLQTG 1062 (1094)
Q Consensus 1030 ~~spd--~l~sgs~dg~I~vwd~~t~~---------------------------------------------~~~~l~~~ 1062 (1094)
+|+|| ++++|+.||+|+|||+.+++ ++..+ .+
T Consensus 495 afspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l-~~ 573 (902)
T 2oaj_A 495 SFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAV-HA 573 (902)
T ss_dssp EEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEE-CC
T ss_pred EecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEE-Ec
Confidence 99999 99999999999999987662 35666 57
Q ss_pred CCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1063 TSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1063 h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
|.+.|++++||||| +|++|+.||+|++||+.
T Consensus 574 h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~ 604 (902)
T 2oaj_A 574 NKGKTSAINNSNIG-FVGIAYAAGSLMLIDRR 604 (902)
T ss_dssp CSCSEEEEEECBTS-EEEEEETTSEEEEEETT
T ss_pred CCCcEEEEEecCCc-EEEEEeCCCcEEEEECC
Confidence 99999999999999 99999999999999973
No 40
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.4e-29 Score=280.07 Aligned_cols=268 Identities=16% Similarity=0.171 Sum_probs=229.5
Q ss_pred cceeecccCCCcEEEEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 001349 804 ELVHVDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVW 882 (1094)
Q Consensus 804 ~~~~~~~~h~~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vW 882 (1094)
+....+.+|.+.|++++|..+ +|++|+.||+|++||+.++ .....+..|...|.+++|+|++++|++|+.||.|++|
T Consensus 9 ~~~~~l~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQ--WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGV 86 (313)
T ss_dssp EEEEEECCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSS--EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred HHHHHhhCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCC--EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence 355678899999999999333 9999999999999999988 7788888999999999999999999999999999999
Q ss_pred ECCCCc--eEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEc----------CCCCceEEEEe---CCE
Q 001349 883 SIGNEE--IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN----------SSKYPKCLALV---QGK 947 (1094)
Q Consensus 883 di~~~~--~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~----------~~~~v~~l~~s---~~~ 947 (1094)
++.... ........+...|.++. | ++..+++++.+|.+++|+ +...+.++.+. ++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~i~~~~-------~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~ 157 (313)
T 3odt_A 87 PLFATSGEDPLYTLIGHQGNVCSLS-------F--QDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENK 157 (313)
T ss_dssp ETTCCTTSCC-CEECCCSSCEEEEE-------E--ETTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTE
T ss_pred EeeecCCCCcccchhhcccCEEEEE-------e--cCCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCE
Confidence 987653 12223345677777776 5 678899999999999997 34567788775 467
Q ss_pred EEEEEcCCeEEEEECCCCceeEEeccceeecC-CCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCC
Q 001349 948 VYCGCQDGAIQEIDLATGTFATIQTGHRKLLG-KANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSE 1025 (1094)
Q Consensus 948 l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~-h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~ 1025 (1094)
+++++.||.|++||. +... ..+.. |...+.+++|++++. +++++.|| .|++||+++++.+..+. |...
T Consensus 158 l~~~~~d~~i~i~d~--~~~~------~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~ 227 (313)
T 3odt_A 158 FLTASADKTIKLWQN--DKVI------KTFSGIHNDVVRHLAVVDDGH-FISCSNDG-LIKLVDMHTGDVLRTYEGHESF 227 (313)
T ss_dssp EEEEETTSCEEEEET--TEEE------EEECSSCSSCEEEEEEEETTE-EEEEETTS-EEEEEETTTCCEEEEEECCSSC
T ss_pred EEEEECCCCEEEEec--CceE------EEEeccCcccEEEEEEcCCCe-EEEccCCC-eEEEEECCchhhhhhhhcCCce
Confidence 999999999999993 3333 33444 888999999999998 78888886 99999999999999888 7889
Q ss_pred EEEEEEeCC-EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1026 VRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1026 v~~l~~spd-~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
|.+++|+|+ .+++|+.||.|++||+.+++.+..+ ..|...|++++|+|+++ +++++.||.|++||+.
T Consensus 228 i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 228 VYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVI-TLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQE 295 (313)
T ss_dssp EEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEE-ECSSSCEEEEEECTTSC-EEEEETTSCEEEEESC
T ss_pred EEEEEEecCCCEEEEecCCEEEEEECCCCceeEEE-eccCceEEEEEEccCCC-EEEEeCCCcEEEEeCC
Confidence 999999999 8999999999999999999999999 58888999999999998 6679999999999974
No 41
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=3.9e-30 Score=298.20 Aligned_cols=274 Identities=12% Similarity=0.166 Sum_probs=216.2
Q ss_pred ccccccccccC-cEEEEeeCCCCeEEEeCC--cceeec--ccCCCcEEEEEEeC-C--EEEEEECCCeEEEEecCCCcce
Q 001349 775 LRKYSPLAFEM-VKVLSNGHDSSADFWNHR--ELVHVD--SSENGKVLSIACFR-D--KIFSGHSDGTIKVWTGRGSILH 846 (1094)
Q Consensus 775 ~~~~~~~~~d~-~~l~s~s~dg~I~vWd~~--~~~~~~--~~h~~~V~~l~fsp-d--~LaSgs~Dg~I~vWd~~t~~~~ 846 (1094)
.+....+.+++ .++++|+.||.|++||.. ...... .+|.+.|.+++|+| + +|++|+.||+|++||+.+....
T Consensus 75 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 154 (383)
T 3ei3_B 75 RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQ 154 (383)
T ss_dssp CEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEE
T ss_pred CEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceE
Confidence 34455677787 899999999999999997 333333 37999999999999 3 9999999999999999975322
Q ss_pred eEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeC
Q 001349 847 LIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRN 926 (1094)
Q Consensus 847 ~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~ 926 (1094)
.+....+|...|++++|+|++++|++|+.||+|++||++... ......+...|.++. |+|++..
T Consensus 155 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~h~~~v~~~~-------~~~~~~~------- 218 (383)
T 3ei3_B 155 VFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHE--IFKEKLHKAKVTHAE-------FNPRCDW------- 218 (383)
T ss_dssp EEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCE--EEEEECSSSCEEEEE-------ECSSCTT-------
T ss_pred EEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCE--EEEeccCCCcEEEEE-------ECCCCCC-------
Confidence 333334455889999999999999999999999999996432 222334566777776 7777662
Q ss_pred CeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCC----CceeEEeccceeecCCCCCeEEEEEeC-CccEEEEEEC
Q 001349 927 GKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLAT----GTFATIQTGHRKLLGKANPVHALQVHN-GLVYTASTSL 1001 (1094)
Q Consensus 927 g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~----~~~~~~~~~~~~~~~h~~~V~sl~fs~-~~~~las~s~ 1001 (1094)
.+++|+.|+.|++||+++ +... ..+ +|...|++++|+| ++.++++++.
T Consensus 219 --------------------~l~s~~~d~~i~iwd~~~~~~~~~~~------~~~-~~~~~v~~~~~s~~~~~~l~~~~~ 271 (383)
T 3ei3_B 219 --------------------LMATSSVDATVKLWDLRNIKDKNSYI------AEM-PHEKPVNAAYFNPTDSTKLLTTDQ 271 (383)
T ss_dssp --------------------EEEEEETTSEEEEEEGGGCCSTTCEE------EEE-ECSSCEEEEEECTTTSCEEEEEES
T ss_pred --------------------EEEEEeCCCEEEEEeCCCCCcccceE------EEe-cCCCceEEEEEcCCCCCEEEEEcC
Confidence 388999999999999998 4443 222 6889999999999 9999999999
Q ss_pred CCCEEEEEECCCCeEEEEec-C-------C----------CCEEEEEEeCC-EEEEEEcCCeEEEEECCCCcEEEEeccc
Q 001349 1002 DGAAVKMWSTSNYNMVGSLP-T-------L----------SEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQTG 1062 (1094)
Q Consensus 1002 Dg~~I~iwd~~~~~~~~~~~-~-------~----------~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~~~~~l~~~ 1062 (1094)
|+ .|++||++++.....+. | . ..+..++++|+ .+ +|+.||.|++||+.+++.+..+...
T Consensus 272 d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~ 349 (383)
T 3ei3_B 272 RN-EIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDP 349 (383)
T ss_dssp SS-EEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBT
T ss_pred CC-cEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeecCC
Confidence 97 99999999877655544 1 1 23444556665 23 6778999999999999999999532
Q ss_pred -CCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1063 -TSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1063 -h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
|.+.+..++|+|++++|++|+ ||+|++||++
T Consensus 350 ~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~ 381 (383)
T 3ei3_B 350 NAAGIISLNKFSPTGDVLASGM-GFNILIWNRE 381 (383)
T ss_dssp TBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC
T ss_pred CCCceEEEEEEecCccEEEEec-CCcEEEEecC
Confidence 567788889999999999997 9999999984
No 42
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.5e-29 Score=325.67 Aligned_cols=312 Identities=13% Similarity=0.123 Sum_probs=241.1
Q ss_pred cccccccccCcEEEEeeCCCCeEEEeCCcce-------------eecccCCCcEEEEEEeCC---EEEEEECCCeEEEEe
Q 001349 776 RKYSPLAFEMVKVLSNGHDSSADFWNHRELV-------------HVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWT 839 (1094)
Q Consensus 776 ~~~~~~~~d~~~l~s~s~dg~I~vWd~~~~~-------------~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd 839 (1094)
+....+.+++.++++|+.||+|++||..... ....+|.+.|++++|+|+ .+++|+.||+| +||
T Consensus 101 V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd 179 (902)
T 2oaj_A 101 ITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYS 179 (902)
T ss_dssp EEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEE
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEE
Confidence 3456677899999999999999999997432 234679999999999994 89999999999 999
Q ss_pred cCCCcceeEEEeccc------------------CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEec------
Q 001349 840 GRGSILHLIQQIREH------------------TKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVH------ 895 (1094)
Q Consensus 840 ~~t~~~~~~~~l~~H------------------~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~------ 895 (1094)
+.++ .++..+..| ...|++++|+|+|++|++|+.||+|++||+++++.......
T Consensus 180 ~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~ 257 (902)
T 2oaj_A 180 LVEN--EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEIN 257 (902)
T ss_dssp TTTT--EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTT
T ss_pred CCCC--ceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccC
Confidence 9998 677777665 57899999999999999999999999999998764332111
Q ss_pred -----------ccCccceeeeecC----c--eEEE---------------------------------------------
Q 001349 896 -----------DIKDQIQNLAVSN----S--ILCF--------------------------------------------- 913 (1094)
Q Consensus 896 -----------~~~~~V~~v~~~~----~--~~~f--------------------------------------------- 913 (1094)
.+..+|.+++|.+ + .+.+
T Consensus 258 ~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 337 (902)
T 2oaj_A 258 VPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIF 337 (902)
T ss_dssp SCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEE
T ss_pred CCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEE
Confidence 1233566666621 1 0000
Q ss_pred -------------ee----------CCCeEEEEEeCCeEEEEcCC-------------------CCceEEEE--------
Q 001349 914 -------------IP----------QGAGIKVHLRNGKTKLLNSS-------------------KYPKCLAL-------- 943 (1094)
Q Consensus 914 -------------sp----------dg~~l~~~~~~g~i~l~~~~-------------------~~v~~l~~-------- 943 (1094)
.+ ++..+++...+|.+++|+.. ..|+++++
T Consensus 338 ~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w 417 (902)
T 2oaj_A 338 PLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLW 417 (902)
T ss_dssp CCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHH
T ss_pred ecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHH
Confidence 00 12245556667888888742 23444444
Q ss_pred --------------------------eC--CEEEEEEcCCeEEEEECCCCceeE--Eeccceee-----cCCCCCeEEEE
Q 001349 944 --------------------------VQ--GKVYCGCQDGAIQEIDLATGTFAT--IQTGHRKL-----LGKANPVHALQ 988 (1094)
Q Consensus 944 --------------------------s~--~~l~sgs~Dg~I~iwDl~~~~~~~--~~~~~~~~-----~~h~~~V~sl~ 988 (1094)
++ ..+++|+.||+|++||+.++.... .+. ..+ .+|...|++++
T Consensus 418 ~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~--~~l~~~~~~~h~~~V~sva 495 (902)
T 2oaj_A 418 LGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFE--VNLSRTLNKAKELAVDKIS 495 (902)
T ss_dssp HHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEE--EEHHHHTTCSSSCCEEEEE
T ss_pred HHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEE--eechhhcCCCCCCceeEEE
Confidence 22 359999999999999999875310 000 011 27889999999
Q ss_pred EeCCccEEEEEECCCCEEEEEECCCC---------------------------------------------eEEEEec-C
Q 001349 989 VHNGLVYTASTSLDGAAVKMWSTSNY---------------------------------------------NMVGSLP-T 1022 (1094)
Q Consensus 989 fs~~~~~las~s~Dg~~I~iwd~~~~---------------------------------------------~~~~~~~-~ 1022 (1094)
|+|++.++++++.|| +|+|||+.++ +++..+. |
T Consensus 496 fspdg~~LAsgs~Dg-tV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h 574 (902)
T 2oaj_A 496 FAAETLELAVSIETG-DVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHAN 574 (902)
T ss_dssp EETTTTEEEEEETTS-CEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCC
T ss_pred ecCCCCeEEEEecCc-EEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcC
Confidence 999999999999997 9999999765 2355666 7
Q ss_pred CCCEEEEEEeCC-EEEEEEcCCeEEEEECCCCcEEEE--ec---ccCCcceEEEEEc-----CCC---CEEEEEeCCCcE
Q 001349 1023 LSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIET--LQ---TGTSGKVQCMALD-----DNE---EFLVIGTSDGRI 1088 (1094)
Q Consensus 1023 ~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~~~~~--l~---~~h~~~I~~l~~S-----pdg---~~L~sgs~DG~I 1088 (1094)
.+.|++++|+|| ++++|+.|++|++||+.++..+.. +. .+|.+.|++++|+ ||| ++|++|+.||+|
T Consensus 575 ~~~V~svafSpdG~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv 654 (902)
T 2oaj_A 575 KGKTSAINNSNIGFVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEV 654 (902)
T ss_dssp SCSEEEEEECBTSEEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEE
T ss_pred CCcEEEEEecCCcEEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcE
Confidence 899999999999 899999999999999988877642 21 2789999999999 886 899999999999
Q ss_pred EEEeC
Q 001349 1089 QAWGL 1093 (1094)
Q Consensus 1089 ~iWdl 1093 (1094)
++||+
T Consensus 655 ~~wd~ 659 (902)
T 2oaj_A 655 ITYKI 659 (902)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
No 43
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=8.9e-30 Score=340.83 Aligned_cols=305 Identities=15% Similarity=0.215 Sum_probs=258.9
Q ss_pred hhhccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCccee
Q 001349 772 LRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHL 847 (1094)
Q Consensus 772 ~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~ 847 (1094)
|...+....+++++.++++|+.||+|++||.. .....+.+|.+.|++++|+|+ +|++|+.||+|+|||+.++ +.
T Consensus 614 h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~--~~ 691 (1249)
T 3sfz_A 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG--KL 691 (1249)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--CE
T ss_pred ccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC--ce
Confidence 33444566788899999999999999999997 456678899999999999997 9999999999999999999 78
Q ss_pred EEEecccCCCeEEEEEec--CCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEe
Q 001349 848 IQQIREHTKAVTGLAILQ--SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLR 925 (1094)
Q Consensus 848 ~~~l~~H~~~V~sv~fsp--dg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~ 925 (1094)
+..+.+|...|++++|+| ++.++++|+.||+|++||+.+++. ......+...|.++. |+|+|+.+++++.
T Consensus 692 ~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~-~~~~~~h~~~v~~~~-------~sp~~~~l~s~s~ 763 (1249)
T 3sfz_A 692 VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC-RNTMFGHTNSVNHCR-------FSPDDELLASCSA 763 (1249)
T ss_dssp EEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE-EEEECCCSSCEEEEE-------ECSSTTEEEEEES
T ss_pred EEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch-hheecCCCCCEEEEE-------EecCCCEEEEEEC
Confidence 999999999999999999 566999999999999999999863 233345778888887 8999999999999
Q ss_pred CCeEEEEcC-------------------------------------------------------------------CCCc
Q 001349 926 NGKTKLLNS-------------------------------------------------------------------SKYP 938 (1094)
Q Consensus 926 ~g~i~l~~~-------------------------------------------------------------------~~~v 938 (1094)
+|.+++|+. ...+
T Consensus 764 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v 843 (1249)
T 3sfz_A 764 DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTI 843 (1249)
T ss_dssp SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCC
T ss_pred CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCce
Confidence 999999863 1234
Q ss_pred eEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeE
Q 001349 939 KCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNM 1016 (1094)
Q Consensus 939 ~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~ 1016 (1094)
.++.|++ ..+++|+.||.|++||+.++... ..+.+|...|++++|+|++.++++++.|| .|++||+.++..
T Consensus 844 ~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~------~~~~~h~~~v~~v~~spdg~~l~s~s~dg-~v~vw~~~~~~~ 916 (1249)
T 3sfz_A 844 QYCDFSPYDHLAVIALSQYCVELWNIDSRLKV------ADCRGHLSWVHGVMFSPDGSSFLTASDDQ-TIRVWETKKVCK 916 (1249)
T ss_dssp CEEEECSSTTEEEEECSSSCEEEEETTTTEEE------EEECCCSSCEEEEEECTTSSEEEEEETTS-CEEEEEHHHHHS
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEcCCCcee------eecCCCccceEEEEECCCCCEEEEEeCCC-eEEEEEccccce
Confidence 5566654 45888888999999999888776 56678999999999999999999999997 999999653100
Q ss_pred -----------------------------E---------EEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEE
Q 001349 1017 -----------------------------V---------GSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRI 1056 (1094)
Q Consensus 1017 -----------------------------~---------~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~ 1056 (1094)
. ........+.+++|+|+ ++++|+.+|.|++||+.+++..
T Consensus 917 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~ 996 (1249)
T 3sfz_A 917 NSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVF 996 (1249)
T ss_dssp CCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCE
T ss_pred eeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCcee
Confidence 0 00113467899999998 8999999999999999999998
Q ss_pred EEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1057 ETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1057 ~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
..+ .+|.+.|++++|+|+|++|++++.||+|++||+.
T Consensus 997 ~~~-~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~ 1033 (1249)
T 3sfz_A 997 SSG-VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ 1033 (1249)
T ss_dssp EEC-CCCSSCCCCEEECSSSSCEEEECSSSBEEEEETT
T ss_pred eec-ccCCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence 888 5899999999999999999999999999999973
No 44
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=1.9e-29 Score=291.46 Aligned_cols=275 Identities=10% Similarity=0.099 Sum_probs=217.0
Q ss_pred cccccccCcEEEEeeCCC-------CeEEEeCCcc------------eeecccCCCcEEEEEEeCCEEEEEE--------
Q 001349 778 YSPLAFEMVKVLSNGHDS-------SADFWNHREL------------VHVDSSENGKVLSIACFRDKIFSGH-------- 830 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg-------~I~vWd~~~~------------~~~~~~h~~~V~~l~fspd~LaSgs-------- 830 (1094)
...|.+|+..|++||.+. .|++|++... ...+.+|...|.+++++++.+++|+
T Consensus 19 sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~~~~l~ 98 (365)
T 4h5i_A 19 GAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNENSTKIT 98 (365)
T ss_dssp EEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCCHHHHH
T ss_pred EEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCCccEEE
Confidence 466788999999987643 5999997521 1245688999999999998877764
Q ss_pred ---CCCeEEEEecCCCcc--eeEEEe-----cccCCCeEEEEEecCCCEEEEEe--CCCcEEEEECCCCceEEEEecccC
Q 001349 831 ---SDGTIKVWTGRGSIL--HLIQQI-----REHTKAVTGLAILQSGEMLYSGS--LDKTARVWSIGNEEIHCVQVHDIK 898 (1094)
Q Consensus 831 ---~Dg~I~vWd~~t~~~--~~~~~l-----~~H~~~V~sv~fspdg~~LaSgs--~DgtI~vWdi~~~~~~~~~~~~~~ 898 (1094)
.|+++++|++.+... ...... ..+...+.+++|||||+++++++ .|++|+|||+.+++. .....+.
T Consensus 99 s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~--~~~~~~~ 176 (365)
T 4h5i_A 99 QGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTE--KFEIETR 176 (365)
T ss_dssp HTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEE--EEEEECS
T ss_pred EecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcE--EEEeCCC
Confidence 477899999876421 112221 23456689999999999987554 689999999999853 3333466
Q ss_pred ccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeec
Q 001349 899 DQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLL 978 (1094)
Q Consensus 899 ~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~ 978 (1094)
..|.+++ |+|||+. +++++ ++.+.+|+..++..... ....
T Consensus 177 ~~V~~v~-------fspdg~~----------------------------l~s~s-~~~~~~~~~~~~~~~~~----~~~~ 216 (365)
T 4h5i_A 177 GEVKDLH-------FSTDGKV----------------------------VAYIT-GSSLEVISTVTGSCIAR----KTDF 216 (365)
T ss_dssp SCCCEEE-------ECTTSSE----------------------------EEEEC-SSCEEEEETTTCCEEEE----ECCC
T ss_pred CceEEEE-------EccCCce----------------------------EEecc-ceeEEEEEeccCcceee----eecC
Confidence 7788887 8999885 55555 55677787777776532 3345
Q ss_pred CCCCCeEEEEEeCCccEEEEEECCCC---EEEEEECCCCeEE----EEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEE
Q 001349 979 GKANPVHALQVHNGLVYTASTSLDGA---AVKMWSTSNYNMV----GSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIW 1048 (1094)
Q Consensus 979 ~h~~~V~sl~fs~~~~~las~s~Dg~---~I~iwd~~~~~~~----~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vw 1048 (1094)
+|...|.+++|+|++.++++++.|++ .+++||+..+... ..+. |...|++++|+|| +|++|+.|++|+||
T Consensus 217 ~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iw 296 (365)
T 4h5i_A 217 DKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALV 296 (365)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred CCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEE
Confidence 68889999999999999999988764 6889998776532 2333 6788999999999 89999999999999
Q ss_pred ECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1049 DQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1049 d~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
|+.+++++..+..+|.+.|++++|||||++|+|||.|++|+||||.
T Consensus 297 d~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 297 KLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLP 342 (365)
T ss_dssp ETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred ECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence 9999999999877999999999999999999999999999999983
No 45
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=9.3e-30 Score=301.02 Aligned_cols=266 Identities=21% Similarity=0.352 Sum_probs=228.1
Q ss_pred cccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccC
Q 001349 778 YSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHT 855 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~ 855 (1094)
...+.+++.++++|+.||.|++||.. .....+.+|.+.|++++|.+++|++|+.||+|++||+.++ ..+..+.+|.
T Consensus 136 v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~--~~~~~~~~h~ 213 (435)
T 1p22_A 136 VYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTG--EMLNTLIHHC 213 (435)
T ss_dssp EEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSC--CEEEEECCCC
T ss_pred EEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCC--cEEEEEcCCC
Confidence 45677899999999999999999987 4567788999999999998889999999999999999999 7889999999
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCC
Q 001349 856 KAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS 935 (1094)
Q Consensus 856 ~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~ 935 (1094)
..|.+++|+ +.++++|+.||+|++||+.++....... .+..+.
T Consensus 214 ~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~-----------------------------------~~~~~~ 256 (435)
T 1p22_A 214 EAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRR-----------------------------------VLVGHR 256 (435)
T ss_dssp SCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEE-----------------------------------EECCCS
T ss_pred CcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeee-----------------------------------EecCCC
Confidence 999999996 4699999999999999998864211000 011233
Q ss_pred CCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCe
Q 001349 936 KYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN 1015 (1094)
Q Consensus 936 ~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~ 1015 (1094)
..|.++.+.++.+++|+.||.|++||+++++.. ..+.+|...|.++.++ +.++++++.|| .|++||+++++
T Consensus 257 ~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~------~~~~~~~~~v~~~~~~--~~~l~~g~~dg-~i~iwd~~~~~ 327 (435)
T 1p22_A 257 AAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFV------RTLNGHKRGIACLQYR--DRLVVSGSSDN-TIRLWDIECGA 327 (435)
T ss_dssp SCEEEEEEETTEEEEEETTSEEEEEETTTCCEE------EEEECCSSCEEEEEEE--TTEEEEEETTS-CEEEEETTTCC
T ss_pred CcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEE------EEEcCCCCcEEEEEeC--CCEEEEEeCCC-eEEEEECCCCC
Confidence 455666666678999999999999999999887 5667889999999995 56888999887 99999999999
Q ss_pred EEEEec-CCCCEEEEEEeCCEEEEEEcCCeEEEEECCCCc---------EEEEecccCCcceEEEEEcCCCCEEEEEeCC
Q 001349 1016 MVGSLP-TLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQI---------RIETLQTGTSGKVQCMALDDNEEFLVIGTSD 1085 (1094)
Q Consensus 1016 ~~~~~~-~~~~v~~l~~spd~l~sgs~dg~I~vwd~~t~~---------~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~D 1085 (1094)
++..+. |...|.++++++.++++|+.||.|++||+.++. ++..+ .+|.+.|++++| ++++|++|+.|
T Consensus 328 ~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~--~~~~l~s~s~D 404 (435)
T 1p22_A 328 CLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL-VEHSGRVFRLQF--DEFQIVSSSHD 404 (435)
T ss_dssp EEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE-CCCSSCCCCEEE--CSSCEEECCSS
T ss_pred EEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCccccccchheeec-cCCCCCeEEEEe--CCCEEEEEeCC
Confidence 999988 778899999988899999999999999987766 78888 589999999999 78899999999
Q ss_pred CcEEEEeCC
Q 001349 1086 GRIQAWGLS 1094 (1094)
Q Consensus 1086 G~I~iWdls 1094 (1094)
|+|++||+.
T Consensus 405 g~i~iwd~~ 413 (435)
T 1p22_A 405 DTILIWDFL 413 (435)
T ss_dssp SEEEEEC--
T ss_pred CEEEEEECC
Confidence 999999973
No 46
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.5e-29 Score=295.50 Aligned_cols=282 Identities=17% Similarity=0.186 Sum_probs=231.5
Q ss_pred CCeEEEeCCcceeeccc--CCCcEEEEEEeCC---EEEEEECCCeEEEEec----CCCcc----eeEEEecc--------
Q 001349 795 SSADFWNHRELVHVDSS--ENGKVLSIACFRD---KIFSGHSDGTIKVWTG----RGSIL----HLIQQIRE-------- 853 (1094)
Q Consensus 795 g~I~vWd~~~~~~~~~~--h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~----~t~~~----~~~~~l~~-------- 853 (1094)
..+.+|++......+.. |.+.|++++|+|+ +|++|+.||.|++||+ .++.. .....+..
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (425)
T 1r5m_A 25 SIDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASS 104 (425)
T ss_dssp ---------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC---
T ss_pred cccccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccc
Confidence 34567888765555554 5699999999996 9999999999999999 87731 03344433
Q ss_pred --cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEE
Q 001349 854 --HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKL 931 (1094)
Q Consensus 854 --H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l 931 (1094)
|.+.|++++|+|++++|++|+.||+|++||.... .......+...|.++. |+|+++.+++++.++.+++
T Consensus 105 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~--~~~~~~~~~~~v~~~~-------~~~~~~~l~~~~~d~~i~i 175 (425)
T 1r5m_A 105 GKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGA--LLNVLNFHRAPIVSVK-------WNKDGTHIISMDVENVTIL 175 (425)
T ss_dssp ---CBCEEEEEECTTSSEEEEEETTSCEEEEETTSC--EEEEECCCCSCEEEEE-------ECTTSSEEEEEETTCCEEE
T ss_pred cCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--eeeeccCCCccEEEEE-------ECCCCCEEEEEecCCeEEE
Confidence 6889999999999999999999999999995443 2333345678888888 9999999999999999999
Q ss_pred EcCCC------------C---------------ceEEEEe-CCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCC
Q 001349 932 LNSSK------------Y---------------PKCLALV-QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANP 983 (1094)
Q Consensus 932 ~~~~~------------~---------------v~~l~~s-~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~ 983 (1094)
|+... . +.++.+. ++.+++++.||.|++||+.++... ..+.+|...
T Consensus 176 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~------~~~~~~~~~ 249 (425)
T 1r5m_A 176 WNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPT------GKLIGHHGP 249 (425)
T ss_dssp EETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCS------EEECCCSSC
T ss_pred EECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCcee------eeeccCCCc
Confidence 98532 1 6777776 477999999999999999998766 456678899
Q ss_pred eEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC-EEEEEEcCCeEEEEECCCCcEEEEecc
Q 001349 984 VHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQT 1061 (1094)
Q Consensus 984 V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~~~~~l~~ 1061 (1094)
|.+++|+|++.++++++.|+ .|++||+.+++.+..+. |...+.+++|+|+ .+++++.||.|++||+.+++.+..+ .
T Consensus 250 i~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~ 327 (425)
T 1r5m_A 250 ISVLEFNDTNKLLLSASDDG-TLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALS-I 327 (425)
T ss_dssp EEEEEEETTTTEEEEEETTS-CEEEECSSSBSCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEE-E
T ss_pred eEEEEECCCCCEEEEEcCCC-EEEEEECCCCccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEec-c
Confidence 99999999999999999887 99999999998888887 7889999999999 9999999999999999999999888 4
Q ss_pred cCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1062 GTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1062 ~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
.|...|++++|+|++++|++++.||.|++||+
T Consensus 328 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~ 359 (425)
T 1r5m_A 328 VDGVPIFAGRISQDGQKYAVAFMDGQVNVYDL 359 (425)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred cCCccEEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence 78899999999999999999999999999997
No 47
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.97 E-value=1.8e-29 Score=289.19 Aligned_cols=250 Identities=19% Similarity=0.227 Sum_probs=207.1
Q ss_pred ceeecccCCC-cEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEE-ecccCCCeEEEEEecCCCEEEEEeCCCcEE
Q 001349 805 LVHVDSSENG-KVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQ-IREHTKAVTGLAILQSGEMLYSGSLDKTAR 880 (1094)
Q Consensus 805 ~~~~~~~h~~-~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~-l~~H~~~V~sv~fspdg~~LaSgs~DgtI~ 880 (1094)
....+.+|.+ .|++++|+|+ +|++|+.||+|+|||+.++...+... ..+|.+.|++++|+|+|++|++|+.|++|+
T Consensus 7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~ 86 (345)
T 3fm0_A 7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTC 86 (345)
T ss_dssp EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEE
Confidence 4556778987 9999999997 99999999999999998874323333 368999999999999999999999999999
Q ss_pred EEECCCCceEEEE-ecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEE
Q 001349 881 VWSIGNEEIHCVQ-VHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQE 959 (1094)
Q Consensus 881 vWdi~~~~~~~~~-~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~i 959 (1094)
+||+.++...+.. ...|...|.+++ |+|+|+. +++|+.|++|++
T Consensus 87 iw~~~~~~~~~~~~~~~h~~~v~~v~-------~sp~~~~----------------------------l~s~s~D~~v~i 131 (345)
T 3fm0_A 87 IWKKNQDDFECVTTLEGHENEVKSVA-------WAPSGNL----------------------------LATCSRDKSVWV 131 (345)
T ss_dssp EEEECCC-EEEEEEECCCSSCEEEEE-------ECTTSSE----------------------------EEEEETTSCEEE
T ss_pred EEEccCCCeEEEEEccCCCCCceEEE-------EeCCCCE----------------------------EEEEECCCeEEE
Confidence 9999887644333 345677777777 7777764 889999999999
Q ss_pred EECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeE--EEEec-CCCCEEEEEEeCC--
Q 001349 960 IDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNM--VGSLP-TLSEVRAMVVSSE-- 1034 (1094)
Q Consensus 960 wDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~--~~~~~-~~~~v~~l~~spd-- 1034 (1094)
||+.++...... ..+.+|...|.+++|+|++.++++++.|+ +|++||..++.. ...+. |...|.+++|+|+
T Consensus 132 wd~~~~~~~~~~---~~~~~h~~~v~~~~~~p~~~~l~s~s~d~-~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~ 207 (345)
T 3fm0_A 132 WEVDEEDEYECV---SVLNSHTQDVKHVVWHPSQELLASASYDD-TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQ 207 (345)
T ss_dssp EEECTTSCEEEE---EEECCCCSCEEEEEECSSSSCEEEEETTS-CEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSS
T ss_pred EECCCCCCeEEE---EEecCcCCCeEEEEECCCCCEEEEEeCCC-cEEEEEecCCCEEEEEEecCCCCceEEEEECCCCC
Confidence 999877543211 45678999999999999999999999997 999999988753 45555 7789999999998
Q ss_pred EEEEEEcCCeEEEEECCC---------------CcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1035 LVYLGCKGGTVEIWDQKR---------------QIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1035 ~l~sgs~dg~I~vwd~~t---------------~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
++++|+.||+|++||... .+++..+...|...|++++|+|++..|++++.|++|++|++
T Consensus 208 ~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~ 281 (345)
T 3fm0_A 208 RLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQE 281 (345)
T ss_dssp EEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEE
T ss_pred EEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEe
Confidence 899999999999999632 13455664458889999999999999999999999999985
No 48
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.97 E-value=7.7e-30 Score=292.21 Aligned_cols=232 Identities=18% Similarity=0.149 Sum_probs=188.6
Q ss_pred ccccccCcEEEEeeCCCCeEEEeCCc--c----eeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEE
Q 001349 779 SPLAFEMVKVLSNGHDSSADFWNHRE--L----VHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQ 850 (1094)
Q Consensus 779 ~~~~~d~~~l~s~s~dg~I~vWd~~~--~----~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~ 850 (1094)
..|.++ .++++|+.||+|+|||+.+ . .....+|.+.|++++|+|+ +|++|+.||+|++||+.++ +++.+
T Consensus 88 ~~~s~d-~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~--~~~~~ 164 (344)
T 4gqb_B 88 LTWVGE-RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ--VVLSS 164 (344)
T ss_dssp EEEETT-TEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--EEEEE
T ss_pred EEEeCC-CeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC--cEEEE
Confidence 334444 5789999999999999873 1 2334589999999999997 9999999999999999999 88999
Q ss_pred ecccCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCceEEE-EecccCccceeeeecCceEEEeeCCCeEEEEEeCCe
Q 001349 851 IREHTKAVTGLAILQSG-EMLYSGSLDKTARVWSIGNEEIHCV-QVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGK 928 (1094)
Q Consensus 851 l~~H~~~V~sv~fspdg-~~LaSgs~DgtI~vWdi~~~~~~~~-~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~ 928 (1094)
+.+|.+.|++++|+|++ .+|++|+.||+|++||+++++.... ....+...+.++. |+|++..
T Consensus 165 ~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-------~~p~~~~--------- 228 (344)
T 4gqb_B 165 YRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLA-------WHPQQSE--------- 228 (344)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEE-------ECSSCTT---------
T ss_pred EcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeee-------ecCCCCc---------
Confidence 99999999999999987 5789999999999999998753221 1222233344444 5554432
Q ss_pred EEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCc-cEEEEEECCCCEEE
Q 001349 929 TKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGL-VYTASTSLDGAAVK 1007 (1094)
Q Consensus 929 i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~-~~las~s~Dg~~I~ 1007 (1094)
.+++|+.||+|++||+++++.+ ..+.+|...|++++|+|++ .++++++.|+ +|+
T Consensus 229 ------------------~l~sg~~dg~v~~wd~~~~~~~------~~~~~h~~~v~~v~fsp~g~~~lasgs~D~-~i~ 283 (344)
T 4gqb_B 229 ------------------VFVFGDENGTVSLVDTKSTSCV------LSSAVHSQCVTGLVFSPHSVPFLASLSEDC-SLA 283 (344)
T ss_dssp ------------------EEEEEETTSEEEEEESCC--CC------EEEECCSSCEEEEEECSSSSCCEEEEETTS-CEE
T ss_pred ------------------ceEEeccCCcEEEEECCCCcEE------EEEcCCCCCEEEEEEccCCCeEEEEEeCCC-eEE
Confidence 4788999999999999999877 5677899999999999987 5789999996 999
Q ss_pred EEECCCCeEEEEecCCCCEEEEEEeCC---EEEEEEcCCeEEEEECCCCc
Q 001349 1008 MWSTSNYNMVGSLPTLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQI 1054 (1094)
Q Consensus 1008 iwd~~~~~~~~~~~~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~~ 1054 (1094)
|||+.++++.....|...|++++|+|+ ++++|+.||+|++|++.+..
T Consensus 284 vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 284 VLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp EECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred EEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 999999988776668899999999987 67899999999999998754
No 49
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=6.2e-29 Score=278.97 Aligned_cols=270 Identities=15% Similarity=0.270 Sum_probs=218.5
Q ss_pred ccccccCcEEEEeeCCCCeEEEeCCc--ceeec--ccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEec
Q 001349 779 SPLAFEMVKVLSNGHDSSADFWNHRE--LVHVD--SSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIR 852 (1094)
Q Consensus 779 ~~~~~d~~~l~s~s~dg~I~vWd~~~--~~~~~--~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~ 852 (1094)
..+++++ .|++ +.|++|+|||..+ ....+ .+|...|++++|+|+ +|++|+.||+|++||+.++ +++..+.
T Consensus 31 l~WS~~~-~lAv-g~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~--~~~~~~~ 106 (318)
T 4ggc_A 31 VDWSSGN-VLAV-ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ--KRLRNMT 106 (318)
T ss_dssp EEECTTS-EEEE-EETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTT--EEEEEEE
T ss_pred EEECCCC-EEEE-EeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCc--eeEEEec
Confidence 3455544 5555 5699999999873 34443 468889999999996 9999999999999999999 8899999
Q ss_pred ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEE
Q 001349 853 EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLL 932 (1094)
Q Consensus 853 ~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~ 932 (1094)
+|...+.++.+ ++..+++|+.++.+++|+...+.........+...+..+. +.++++
T Consensus 107 ~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~-------------- 163 (318)
T 4ggc_A 107 SHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLR-------WAPDGR-------------- 163 (318)
T ss_dssp CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEE-------ECTTSS--------------
T ss_pred CccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEE-------EcCCCC--------------
Confidence 99999887655 5789999999999999999887544444445555565555 556555
Q ss_pred cCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCcc---EEEEEECCCCEEEEE
Q 001349 933 NSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLV---YTASTSLDGAAVKMW 1009 (1094)
Q Consensus 933 ~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~---~las~s~Dg~~I~iw 1009 (1094)
.+++++.||.|++||+++++...... .....|...|.++.+++++. .+++++.+ ++|++|
T Consensus 164 --------------~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~i~lw 226 (318)
T 4ggc_A 164 --------------HLASGGNDNLVNVWPSAPGEGGWVPL--QTFTQHQGAVKAVAWCPWQSNVLATGGGTSD-RHIRIW 226 (318)
T ss_dssp --------------EEEEEETTSCEEEEESSCBTTBSCCS--EEECCCCSCEEEEEECTTSTTEEEEEECTTT-CEEEEE
T ss_pred --------------EEEEEecCcceeEEECCCCcccccce--eeecccCCceEEEEecCCCCcEEEEEecCCC-CEEEEE
Confidence 48899999999999999876442211 34566778999999987543 23444555 499999
Q ss_pred ECCCCeEEEEecCCCCEEEEEEeCC--EEEEE--EcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCC
Q 001349 1010 STSNYNMVGSLPTLSEVRAMVVSSE--LVYLG--CKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSD 1085 (1094)
Q Consensus 1010 d~~~~~~~~~~~~~~~v~~l~~spd--~l~sg--s~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~D 1085 (1094)
|...........+...+..+.|+++ .++++ +.||.|++||+.+++++.++ .+|.+.|++++|+|||++|+||+.|
T Consensus 227 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l-~gH~~~V~~l~~spdg~~l~S~s~D 305 (318)
T 4ggc_A 227 NVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL-KGHTSRVLSLTMSPDGATVASAAAD 305 (318)
T ss_dssp ETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSCEEEEETT
T ss_pred ecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEE-cCCCCCEEEEEEcCCCCEEEEEecC
Confidence 9999998888888999999999987 55544 47999999999999999999 5999999999999999999999999
Q ss_pred CcEEEEeC
Q 001349 1086 GRIQAWGL 1093 (1094)
Q Consensus 1086 G~I~iWdl 1093 (1094)
|+|+|||+
T Consensus 306 ~~v~iWd~ 313 (318)
T 4ggc_A 306 ETLRLWRC 313 (318)
T ss_dssp TEEEEECC
T ss_pred CeEEEEEC
Confidence 99999997
No 50
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.97 E-value=3.1e-29 Score=283.89 Aligned_cols=268 Identities=17% Similarity=0.184 Sum_probs=218.9
Q ss_pred hhhcccccccccc-CcEEEEeeCCCCeEEEeCC-------cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecC
Q 001349 772 LRELRKYSPLAFE-MVKVLSNGHDSSADFWNHR-------ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGR 841 (1094)
Q Consensus 772 ~~~~~~~~~~~~d-~~~l~s~s~dg~I~vWd~~-------~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~ 841 (1094)
|...+....+.++ +.++++|+.|++|++|+.. .....+.+|...|.+++|+|+ +|++|+.||+|++||+.
T Consensus 16 H~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~ 95 (319)
T 3frx_A 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVA 95 (319)
T ss_dssp CSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred ccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence 3344444556654 4799999999999999975 235567899999999999997 99999999999999999
Q ss_pred CCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEE
Q 001349 842 GSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIK 921 (1094)
Q Consensus 842 t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~ 921 (1094)
++ +.+..+.+|.+.|.+++|+|++.+|++|+.|++|++||++... ......+...|.++.+.+... ..+++..++
T Consensus 96 ~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~--~~~~~~h~~~v~~~~~~~~~~-~~~~~~~l~ 170 (319)
T 3frx_A 96 TG--ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC--LATLLGHNDWVSQVRVVPNEK-ADDDSVTII 170 (319)
T ss_dssp TT--EEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCE--EEEECCCSSCEEEEEECCC-------CCEEE
T ss_pred CC--CeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--EEEEeccCCcEEEEEEccCCC-CCCCccEEE
Confidence 99 7889999999999999999999999999999999999998653 333445677888887332211 123566899
Q ss_pred EEEeCCeEEEEcC------------CCCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEE
Q 001349 922 VHLRNGKTKLLNS------------SKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHAL 987 (1094)
Q Consensus 922 ~~~~~g~i~l~~~------------~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl 987 (1094)
+++.++.+++|+. ...|.++++++ ..+++|+.||.|++||+.+++.+..+ .. ...|.++
T Consensus 171 s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~------~~-~~~v~~~ 243 (319)
T 3frx_A 171 SAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL------SA-QDEVFSL 243 (319)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE------EC-CSCEEEE
T ss_pred EEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe------cC-CCcEEEE
Confidence 9999999999984 45789999986 46999999999999999999877433 22 3689999
Q ss_pred EEeCCccEEEEEECCCCEEEEEECCCCeEEEEec---------CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCC
Q 001349 988 QVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP---------TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQ 1053 (1094)
Q Consensus 988 ~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~---------~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~ 1053 (1094)
+|+|++.++++++.+ .+++|++..+..+..+. +...+.+++|+|| ++++|+.||.|+|||+.++
T Consensus 244 ~~sp~~~~la~~~~~--~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 244 AFSPNRYWLAAATAT--GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EECSSSSEEEEEETT--EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred EEcCCCCEEEEEcCC--CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 999999999988754 69999999887776654 2456899999999 8999999999999998754
No 51
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=7.2e-30 Score=341.71 Aligned_cols=304 Identities=17% Similarity=0.217 Sum_probs=242.1
Q ss_pred hccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeC--C--EEEEEECCCeEEEEecCCCccee
Q 001349 774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFR--D--KIFSGHSDGTIKVWTGRGSILHL 847 (1094)
Q Consensus 774 ~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fsp--d--~LaSgs~Dg~I~vWd~~t~~~~~ 847 (1094)
..+....+++++.++++++.||+|++||.. .....+.+|.+.|.+++|+| + ++++|+.||+|++||+.++ .+
T Consensus 658 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~--~~ 735 (1249)
T 3sfz_A 658 DEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK--EC 735 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSS--SE
T ss_pred CCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCc--ch
Confidence 344456788899999999999999999997 45677889999999999998 3 8999999999999999999 78
Q ss_pred EEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEe---------------------------------
Q 001349 848 IQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQV--------------------------------- 894 (1094)
Q Consensus 848 ~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~--------------------------------- 894 (1094)
+..+.+|.+.|++++|+|+|+++++|+.||+|++||+.++.......
T Consensus 736 ~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 815 (1249)
T 3sfz_A 736 RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIV 815 (1249)
T ss_dssp EEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEE
T ss_pred hheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEE
Confidence 89999999999999999999999999999999999998764211110
Q ss_pred ---------------------cccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEc------------CCCCceEE
Q 001349 895 ---------------------HDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN------------SSKYPKCL 941 (1094)
Q Consensus 895 ---------------------~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~------------~~~~v~~l 941 (1094)
..+...+.++. |+|++..++++..+|.+++|+ +...|.++
T Consensus 816 ~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~-------~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 888 (1249)
T 3sfz_A 816 AAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCD-------FSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGV 888 (1249)
T ss_dssp EETTEEEEEETTTCCEEEEEECSSSSCCCEEE-------ECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred EcCCcEEEEEecCCCceeEEcCCCCCceEEEE-------EcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEE
Confidence 01222333333 455555555555555555443 23444555
Q ss_pred EEeC--CEEEEEEcCCeEEE------------------------------------------------------------
Q 001349 942 ALVQ--GKVYCGCQDGAIQE------------------------------------------------------------ 959 (1094)
Q Consensus 942 ~~s~--~~l~sgs~Dg~I~i------------------------------------------------------------ 959 (1094)
.|++ ..+++++.||.|++
T Consensus 889 ~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 968 (1249)
T 3sfz_A 889 MFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCC 968 (1249)
T ss_dssp EECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEE
T ss_pred EECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEE
Confidence 5543 23444445555554
Q ss_pred -------------------EECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEe
Q 001349 960 -------------------IDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSL 1020 (1094)
Q Consensus 960 -------------------wDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~ 1020 (1094)
||+.++... ..+.+|...|++++|+|++.++++++.|| .|++||+.++......
T Consensus 969 ~sp~g~~l~~g~~~g~i~i~d~~~~~~~------~~~~~h~~~v~~l~~s~dg~~l~s~~~dg-~i~vwd~~~~~~~~~~ 1041 (1249)
T 3sfz_A 969 LSPHLEYVAFGDEDGAIKIIELPNNRVF------SSGVGHKKAVRHIQFTADGKTLISSSEDS-VIQVWNWQTGDYVFLQ 1041 (1249)
T ss_dssp ECTTSSEEEEEETTSCCEEEETTTTSCE------EECCCCSSCCCCEEECSSSSCEEEECSSS-BEEEEETTTTEEECCB
T ss_pred EcCCCCEEEEEcCCCCEEEEEcCCCcee------eecccCCCceEEEEECCCCCEEEEEcCCC-EEEEEECCCCceEEEe
Confidence 444444433 34568999999999999999999999997 9999999999988777
Q ss_pred cCCCCEEEEEEeCC-EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1021 PTLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1021 ~~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
.|...+.++.|+++ .+++++.||.|++||+.+++....+ .+|.+.|++++|+|||++|++++.||+|++||+.
T Consensus 1042 ~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~-~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~ 1115 (1249)
T 3sfz_A 1042 AHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDF-TCHQGTVLSCAISSDATKFSSTSADKTAKIWSFD 1115 (1249)
T ss_dssp CCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEE-ECCSSCCCCEEECSSSSSCEEECCSSCCCEECSS
T ss_pred cCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEE-cccCCcEEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence 78899999999998 8999999999999999999999998 5899999999999999999999999999999973
No 52
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.1e-31 Score=316.82 Aligned_cols=296 Identities=10% Similarity=0.078 Sum_probs=215.2
Q ss_pred cccCcEEEEeeCCCCeEEEeCCcc------eeecccCCCcEEEEEEeCC--------EEEEEECCCeEEEEecCCCcc--
Q 001349 782 AFEMVKVLSNGHDSSADFWNHREL------VHVDSSENGKVLSIACFRD--------KIFSGHSDGTIKVWTGRGSIL-- 845 (1094)
Q Consensus 782 ~~d~~~l~s~s~dg~I~vWd~~~~------~~~~~~h~~~V~~l~fspd--------~LaSgs~Dg~I~vWd~~t~~~-- 845 (1094)
.+++..+++++.|++|+||++... ...+.+|.+.|.+++|+|+ +|++|+.||+|++||+.++..
T Consensus 170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~ 249 (524)
T 2j04_B 170 NEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDV 249 (524)
T ss_dssp ------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSS
T ss_pred chhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccc
Confidence 466778899999999999998632 1345678899999999984 999999999999999987631
Q ss_pred -------eeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCC-
Q 001349 846 -------HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQG- 917 (1094)
Q Consensus 846 -------~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg- 917 (1094)
.+..++.+|...|++++|+++ ..|++|+.||+|++||++++.........|...|.++++ .|+|+|
T Consensus 250 ~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~-----~~s~~g~ 323 (524)
T 2j04_B 250 HVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVST-----AYSDFED 323 (524)
T ss_dssp SEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEE-----ECCTTSC
T ss_pred ccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEE-----EcCCCCC
Confidence 123477899999999999986 489999999999999999764222233456788888831 278888
Q ss_pred CeEEEEEeCCeEEEEcCC--------------CCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCC
Q 001349 918 AGIKVHLRNGKTKLLNSS--------------KYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKA 981 (1094)
Q Consensus 918 ~~l~~~~~~g~i~l~~~~--------------~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~ 981 (1094)
..+++++.|+++++|+.. ..+.+++|+| ..+++++.|++|++||++++... ..+.+|.
T Consensus 324 ~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~------~~l~gH~ 397 (524)
T 2j04_B 324 TVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAV------HPLVSRE 397 (524)
T ss_dssp CEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCC------EEEEECS
T ss_pred eEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccc------eeeecCC
Confidence 889999999999999852 2477899997 36899999999999999998875 4566899
Q ss_pred CCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec------CCCCEEEEEEeCC-EEEEEEcCCeEEEEECC-CC
Q 001349 982 NPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP------TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQK-RQ 1053 (1094)
Q Consensus 982 ~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~------~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~-t~ 1053 (1094)
..|++++|+|++.++++++.|+ +|++||+..+ ...... +...+..++|+|+ .++.... .+.+|+.. ++
T Consensus 398 ~~V~sva~Sp~g~~l~Sgs~Dg-tv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~--~~~~~~~~~~g 473 (524)
T 2j04_B 398 TTITAIGVSRLHPMVLAGSADG-SLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDS--SYEVYPLTVND 473 (524)
T ss_dssp SCEEEEECCSSCCBCEEEETTT-EEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEEECC--CCCCCC-----
T ss_pred CceEEEEeCCCCCeEEEEECCC-EEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEEccC--CceecccccCC
Confidence 9999999999999999999997 9999998653 221111 1224678899987 3333322 23344433 46
Q ss_pred cEEEEecccCCcceEEEEEcCCCC---EEEEEeCCCcEEEEeCC
Q 001349 1054 IRIETLQTGTSGKVQCMALDDNEE---FLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1054 ~~~~~l~~~h~~~I~~l~~Spdg~---~L~sgs~DG~I~iWdls 1094 (1094)
..+..+ .+|.+.|++++|+|++. ++++|+.||+|+||++.
T Consensus 474 ~~~~~l-~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 474 VSKAKI-DAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp ---------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECS
T ss_pred cceeee-cCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcc
Confidence 667777 58999999999999964 99999999999999973
No 53
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.97 E-value=6.1e-30 Score=292.71 Aligned_cols=279 Identities=15% Similarity=0.200 Sum_probs=220.6
Q ss_pred cccccccccc----CcEEEEeeCCCCeEEEeCCc--ceeecc-----cCCCcEEEEEEeCC------EEEEEECCCeEEE
Q 001349 775 LRKYSPLAFE----MVKVLSNGHDSSADFWNHRE--LVHVDS-----SENGKVLSIACFRD------KIFSGHSDGTIKV 837 (1094)
Q Consensus 775 ~~~~~~~~~d----~~~l~s~s~dg~I~vWd~~~--~~~~~~-----~h~~~V~~l~fspd------~LaSgs~Dg~I~v 837 (1094)
.+....+.++ ...+++++.++.|++|+... ....+. .|.+.|++++|+|+ +|++|+.||+|++
T Consensus 20 ~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v 99 (366)
T 3k26_A 20 PLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRI 99 (366)
T ss_dssp CEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEE
T ss_pred ceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEE
Confidence 3334445542 34677777778999999872 222332 36788999999986 8999999999999
Q ss_pred EecCCCcceeEEEecccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCceEEEEe--cccCccceeeeecCceEEEe
Q 001349 838 WTGRGSILHLIQQIREHTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEEIHCVQV--HDIKDQIQNLAVSNSILCFI 914 (1094)
Q Consensus 838 Wd~~t~~~~~~~~l~~H~~~V~sv~fsp-dg~~LaSgs~DgtI~vWdi~~~~~~~~~~--~~~~~~V~~v~~~~~~~~fs 914 (1094)
||+.++ +.+..+.+|...|++++|+| ++++|++|+.||+|++||+.+++...... ..+...|.++. |+
T Consensus 100 ~d~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~-------~~ 170 (366)
T 3k26_A 100 INPITM--QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSAD-------YD 170 (366)
T ss_dssp ECTTTC--CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEE-------EC
T ss_pred EEchhc--eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEE-------EC
Confidence 999998 78888999999999999999 99999999999999999999875322221 35667777776 77
Q ss_pred eCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEecc---------------------
Q 001349 915 PQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTG--------------------- 973 (1094)
Q Consensus 915 pdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~--------------------- 973 (1094)
|++.. +++|+.||.|++||+++++....+..
T Consensus 171 ~~~~~----------------------------l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (366)
T 3k26_A 171 LLGEK----------------------------IMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFP 222 (366)
T ss_dssp TTSSE----------------------------EEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCC
T ss_pred CCCCE----------------------------EEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccC
Confidence 77664 78889999999999987754421110
Q ss_pred -ceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeE--------------EEEec-CCCCEEEEEEeCC---
Q 001349 974 -HRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNM--------------VGSLP-TLSEVRAMVVSSE--- 1034 (1094)
Q Consensus 974 -~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~--------------~~~~~-~~~~v~~l~~spd--- 1034 (1094)
.....+|...|.++.|+ +.++++++.|+ .|++||+.++.. +..+. |...|.+++|+|+
T Consensus 223 ~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 299 (366)
T 3k26_A 223 DFSTRDIHRNYVDCVRWL--GDLILSKSCEN-AIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQ 299 (366)
T ss_dssp SEEECSSCSSCCCEEEEE--TTEEEEECSSS-EEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTS
T ss_pred ccccccCCcceEEEEEEc--CCEEEEEecCC-EEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCC
Confidence 12233488999999999 55888988886 999999987643 55555 6778888888865
Q ss_pred -EEEEEEcCCeEEEEECCCCc----EEEEecccC--CcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1035 -LVYLGCKGGTVEIWDQKRQI----RIETLQTGT--SGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1035 -~l~sgs~dg~I~vwd~~t~~----~~~~l~~~h--~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
++++|+.||.|++||+.+++ ....+ .+| ...|++++|+|++++|++++.||.|++||+.
T Consensus 300 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 300 KMLALGNQVGKLYVWDLEVEDPHKAKCTTL-THHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp SEEEEECTTSCEEEEECCSSSGGGCEEEEE-CCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred cEEEEEecCCcEEEEECCCCCCccccceEE-cccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 89999999999999999875 44466 456 7899999999999999999999999999974
No 54
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.97 E-value=4.4e-29 Score=318.68 Aligned_cols=304 Identities=17% Similarity=0.158 Sum_probs=257.4
Q ss_pred hhccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeE
Q 001349 773 RELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLI 848 (1094)
Q Consensus 773 ~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~ 848 (1094)
...+....+++++.++++++.||.|++||.. .....+.+|.+.|++++|+|+ +|++|+.||+|++||+.++ ..+
T Consensus 13 ~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~--~~~ 90 (814)
T 3mkq_A 13 SDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG--EKV 90 (814)
T ss_dssp CSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC--CEE
T ss_pred CCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC--cEE
Confidence 3445567788899999999999999999987 456677899999999999996 9999999999999999998 788
Q ss_pred EEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEee-CCCeEEEEEeCC
Q 001349 849 QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIP-QGAGIKVHLRNG 927 (1094)
Q Consensus 849 ~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fsp-dg~~l~~~~~~g 927 (1094)
..+.+|.+.|++++|+|++++|++++.||+|++||+.++.........+...|.++. |+| ++..+++++.+|
T Consensus 91 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~-------~~p~~~~~l~~~~~dg 163 (814)
T 3mkq_A 91 VDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA-------FNPKDPSTFASGCLDR 163 (814)
T ss_dssp EEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEE-------EETTEEEEEEEEETTS
T ss_pred EEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEE-------EEcCCCCEEEEEeCCC
Confidence 889999999999999999999999999999999999987434444455678888888 999 888999999999
Q ss_pred eEEEEcCC-------------CCceEEEEeC----CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEe
Q 001349 928 KTKLLNSS-------------KYPKCLALVQ----GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVH 990 (1094)
Q Consensus 928 ~i~l~~~~-------------~~v~~l~~s~----~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs 990 (1094)
.+.+|+.. ..+.++.+++ ..+++|+.||.|++||+.++... ..+.+|...|.+++|+
T Consensus 164 ~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~------~~~~~~~~~v~~~~~~ 237 (814)
T 3mkq_A 164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV------ATLEGHMSNVSFAVFH 237 (814)
T ss_dssp EEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEE------EEEECCSSCEEEEEEC
T ss_pred eEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEE------EEEcCCCCCEEEEEEc
Confidence 99999842 5688888864 46999999999999999998876 5567788999999999
Q ss_pred CCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCCE---EEEEEcCCeEEEEECCCCcEEEEec------
Q 001349 991 NGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSEL---VYLGCKGGTVEIWDQKRQIRIETLQ------ 1060 (1094)
Q Consensus 991 ~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd~---l~sgs~dg~I~vwd~~t~~~~~~l~------ 1060 (1094)
|++.++++++.|| .|++||+.+++.+..+. +...+.+++|+|+. +++++.++.+.+|++..+.....+.
T Consensus 238 ~~~~~l~~~~~dg-~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 316 (814)
T 3mkq_A 238 PTLPIIISGSEDG-TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLV 316 (814)
T ss_dssp SSSSEEEEEETTS-CEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEE
T ss_pred CCCCEEEEEeCCC-eEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEE
Confidence 9999999999997 99999999999998888 67899999999982 4555567778899876432221110
Q ss_pred ------------------------------------ccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1061 ------------------------------------TGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1061 ------------------------------------~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
..+...+.+++|+|+|+++++++ ||.+.+|++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~ 384 (814)
T 3mkq_A 317 WSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTA 384 (814)
T ss_dssp EECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEET
T ss_pred EECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEEC
Confidence 12344678999999999999888 899999985
No 55
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.97 E-value=6.5e-29 Score=279.44 Aligned_cols=244 Identities=20% Similarity=0.335 Sum_probs=209.0
Q ss_pred ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 001349 805 LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVW 882 (1094)
Q Consensus 805 ~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vW 882 (1094)
....+.+|.+.|++++|+|+ +|++|+.||+|++||..++ .....+.+|...|.+++|+|++++|++|+.||+|++|
T Consensus 15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred eEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCc--ccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence 34567899999999999997 9999999999999999988 6788899999999999999999999999999999999
Q ss_pred ECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEEC
Q 001349 883 SIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDL 962 (1094)
Q Consensus 883 di~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl 962 (1094)
|+.+++.. .....+...|.++. |+|+++ .+++|+.||.|++||+
T Consensus 93 d~~~~~~~-~~~~~~~~~v~~~~-------~~~~~~----------------------------~l~s~~~d~~i~iwd~ 136 (312)
T 4ery_A 93 DVSSGKCL-KTLKGHSNYVFCCN-------FNPQSN----------------------------LIVSGSFDESVRIWDV 136 (312)
T ss_dssp ETTTCCEE-EEEECCSSCEEEEE-------ECSSSS----------------------------EEEEEETTSCEEEEET
T ss_pred ECCCCcEE-EEEcCCCCCEEEEE-------EcCCCC----------------------------EEEEEeCCCcEEEEEC
Confidence 99987522 22234556666665 666665 4889999999999999
Q ss_pred CCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec--CCCCEEEEEEeCC--EEEE
Q 001349 963 ATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP--TLSEVRAMVVSSE--LVYL 1038 (1094)
Q Consensus 963 ~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~--~~~~v~~l~~spd--~l~s 1038 (1094)
++++.. ..+..|..+|.++.|++++.++++++.|| .|++||+++++.+..+. +...+..++|+|+ ++++
T Consensus 137 ~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 209 (312)
T 4ery_A 137 KTGKCL------KTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 209 (312)
T ss_dssp TTCCEE------EEECCCSSCEEEEEECTTSSEEEEEETTS-CEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEE
T ss_pred CCCEEE------EEecCCCCcEEEEEEcCCCCEEEEEeCCC-cEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEE
Confidence 999877 45677889999999999999999999997 99999999998887775 5677999999998 8999
Q ss_pred EEcCCeEEEEECCCCcEEEEecccCCcce---EEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1039 GCKGGTVEIWDQKRQIRIETLQTGTSGKV---QCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1039 gs~dg~I~vwd~~t~~~~~~l~~~h~~~I---~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
++.||.|++||+.+++.+..+ .+|...+ ......+++.+|++|+.||.|++||+.
T Consensus 210 ~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~ 267 (312)
T 4ery_A 210 ATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 267 (312)
T ss_dssp EETTTEEEEEETTTTEEEEEE-CSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETT
T ss_pred EcCCCeEEEEECCCCcEEEEE-EecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECC
Confidence 999999999999999999888 4666543 233334678999999999999999973
No 56
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1.4e-30 Score=300.85 Aligned_cols=281 Identities=13% Similarity=0.136 Sum_probs=210.0
Q ss_pred ccccccccccCcEEEEeeCCCCeEEEeCCc----ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCc-cee
Q 001349 775 LRKYSPLAFEMVKVLSNGHDSSADFWNHRE----LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI-LHL 847 (1094)
Q Consensus 775 ~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~----~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~-~~~ 847 (1094)
.+....+.+++.++++++.|+.|++||... ....+.+|.+.|++++|+|+ +|++|+.||+|++||+.++. ...
T Consensus 13 ~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~ 92 (377)
T 3dwl_C 13 PSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQ 92 (377)
T ss_dssp CCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCC
T ss_pred cEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceee
Confidence 345667888999999999999999999873 45677899999999999996 99999999999999999874 346
Q ss_pred EEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCce--EEEEecc-cCccceeeeecCceEEEeeCCCeEEEEE
Q 001349 848 IQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEI--HCVQVHD-IKDQIQNLAVSNSILCFIPQGAGIKVHL 924 (1094)
Q Consensus 848 ~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~--~~~~~~~-~~~~V~~v~~~~~~~~fspdg~~l~~~~ 924 (1094)
...+.+|...|++++|+|++++|++|+.|++|++||+++++. ....... +...|.++. |+|+++
T Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~-------~~~~~~------ 159 (377)
T 3dwl_C 93 TLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLD-------WHPNNV------ 159 (377)
T ss_dssp EEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEE-------ECTTSS------
T ss_pred eeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEE-------EcCCCC------
Confidence 788889999999999999999999999999999999998741 0111222 566677666 666665
Q ss_pred eCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeE------------EeccceeecCCCCCeEEEEEeCC
Q 001349 925 RNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFAT------------IQTGHRKLLGKANPVHALQVHNG 992 (1094)
Q Consensus 925 ~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~------------~~~~~~~~~~h~~~V~sl~fs~~ 992 (1094)
.+++|+.||.|++||+.++.... .......+ +|...|++++|+|+
T Consensus 160 ----------------------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~ 216 (377)
T 3dwl_C 160 ----------------------LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPS 216 (377)
T ss_dssp ----------------------EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTT
T ss_pred ----------------------EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCC
Confidence 38889999999999986432110 00011334 89999999999999
Q ss_pred ccEEEEEECCCCEEEEEECCCCeE----EEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCc-----------
Q 001349 993 LVYTASTSLDGAAVKMWSTSNYNM----VGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQI----------- 1054 (1094)
Q Consensus 993 ~~~las~s~Dg~~I~iwd~~~~~~----~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~----------- 1054 (1094)
+.++++++.|| .|++||+.+++. +..+. |...|.+++|+|+ ++++|+.++.+ +|+.....
T Consensus 217 ~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 294 (377)
T 3dwl_C 217 GNALAYAGHDS-SVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGT 294 (377)
T ss_dssp SSCEEEEETTT-EEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCC
T ss_pred CCEEEEEeCCC-cEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccc
Confidence 99999999997 999999999876 55565 6788999999998 67777666655 66654111
Q ss_pred ----------------------------EEE------------EecccCCcceEEEEEcCCC-C---EEEEEeCCCcEEE
Q 001349 1055 ----------------------------RIE------------TLQTGTSGKVQCMALDDNE-E---FLVIGTSDGRIQA 1090 (1094)
Q Consensus 1055 ----------------------------~~~------------~l~~~h~~~I~~l~~Spdg-~---~L~sgs~DG~I~i 1090 (1094)
... .+...|.+.|+++++.+++ . .|+|||.||+|++
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~i 374 (377)
T 3dwl_C 295 SKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVL 374 (377)
T ss_dssp CCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEE
T ss_pred cccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEE
Confidence 000 0112389999999976544 3 6999999999999
Q ss_pred EeC
Q 001349 1091 WGL 1093 (1094)
Q Consensus 1091 Wdl 1093 (1094)
||+
T Consensus 375 Wdl 377 (377)
T 3dwl_C 375 WTL 377 (377)
T ss_dssp ECC
T ss_pred ecC
Confidence 996
No 57
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=3.9e-30 Score=290.88 Aligned_cols=247 Identities=19% Similarity=0.248 Sum_probs=196.4
Q ss_pred eecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEec--CCCEEEEEeCCCcEEEE
Q 001349 807 HVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQ--SGEMLYSGSLDKTARVW 882 (1094)
Q Consensus 807 ~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fsp--dg~~LaSgs~DgtI~vW 882 (1094)
..+.+|.+.|++++|+|+ +|++|+.||+|+|||+.++....+..+.+|.+.|++++|++ ++++|+||+.|++|++|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 356789999999999986 99999999999999998874446788999999999999986 48999999999999999
Q ss_pred ECCCCceEE-EEecccCccceeeeecCceEEEeeC--CCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEE
Q 001349 883 SIGNEEIHC-VQVHDIKDQIQNLAVSNSILCFIPQ--GAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQE 959 (1094)
Q Consensus 883 di~~~~~~~-~~~~~~~~~V~~v~~~~~~~~fspd--g~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~i 959 (1094)
|+.++.... .....|...|.++. |+|+ |. .+++|+.||+|++
T Consensus 87 d~~~~~~~~~~~~~~h~~~V~~v~-------~~p~~~g~----------------------------~lasgs~D~~i~l 131 (316)
T 3bg1_A 87 REENGTWEKSHEHAGHDSSVNSVC-------WAPHDYGL----------------------------ILACGSSDGAISL 131 (316)
T ss_dssp CCSSSCCCEEEEECCCSSCCCEEE-------ECCTTTCS----------------------------CEEEECSSSCEEE
T ss_pred ECCCCcceEEEEccCCCCceEEEE-------ECCCCCCc----------------------------EEEEEcCCCCEEE
Confidence 999875322 22334566777776 6666 33 3889999999999
Q ss_pred EECCCCceeEEeccceeecCCCCCeEEEEEeCC-----------------ccEEEEEECCCCEEEEEECCCC---eEEEE
Q 001349 960 IDLATGTFATIQTGHRKLLGKANPVHALQVHNG-----------------LVYTASTSLDGAAVKMWSTSNY---NMVGS 1019 (1094)
Q Consensus 960 wDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~-----------------~~~las~s~Dg~~I~iwd~~~~---~~~~~ 1019 (1094)
||++++..... ...+.+|...|.++.|+|+ +.++++++.|+ +|++||+... .+...
T Consensus 132 wd~~~~~~~~~---~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~-~v~lWd~~~~~~~~~~~~ 207 (316)
T 3bg1_A 132 LTYTGEGQWEV---KKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDN-LIKLWKEEEDGQWKEEQK 207 (316)
T ss_dssp EEECSSSCEEE---CCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTS-BCCEEEECTTSCEEEEEC
T ss_pred EecCCCCCcce---eeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCC-eEEEEEeCCCCccceeee
Confidence 99987642211 1345688899999999987 36889999886 9999999755 45666
Q ss_pred ec-CCCCEEEEEEeCC------EEEEEEcCCeEEEEECCCC---c-EEEEecccCCcceEEEEEcCCCCEEEEEeCCCcE
Q 001349 1020 LP-TLSEVRAMVVSSE------LVYLGCKGGTVEIWDQKRQ---I-RIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRI 1088 (1094)
Q Consensus 1020 ~~-~~~~v~~l~~spd------~l~sgs~dg~I~vwd~~t~---~-~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I 1088 (1094)
+. |...|.+++|+|+ ++++|+.||+|++||+.+. . ....+ .+|.+.|++++|+|+|++|++|+.||+|
T Consensus 208 l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~-~~~~~~v~~v~~sp~g~~las~~~D~~v 286 (316)
T 3bg1_A 208 LEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLL-HKFNDVVWHVSWSITANILAVSGGDNKV 286 (316)
T ss_dssp CBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEE-EECSSCEEEEEECTTTCCEEEEESSSCE
T ss_pred cccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhh-hcCCCcEEEEEEcCCCCEEEEEcCCCeE
Confidence 66 7788999999985 6999999999999998763 1 12233 4688899999999999999999999999
Q ss_pred EEEeC
Q 001349 1089 QAWGL 1093 (1094)
Q Consensus 1089 ~iWdl 1093 (1094)
++|+.
T Consensus 287 ~lw~~ 291 (316)
T 3bg1_A 287 TLWKE 291 (316)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99985
No 58
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=2.1e-29 Score=287.39 Aligned_cols=278 Identities=16% Similarity=0.213 Sum_probs=226.2
Q ss_pred eeecccCCCcEEEEEEeCC---EEEEEEC---CCeEEEEecCCCcceeEEEecccCCCeEEEEEecC---CCEEEEEeCC
Q 001349 806 VHVDSSENGKVLSIACFRD---KIFSGHS---DGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS---GEMLYSGSLD 876 (1094)
Q Consensus 806 ~~~~~~h~~~V~~l~fspd---~LaSgs~---Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspd---g~~LaSgs~D 876 (1094)
.....+|.+.|++++|+|+ ++++|+. ||+|++||+.++....... .+|...|++++|+|+ |++|++|+.|
T Consensus 11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~d 89 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLRE-IEKAKPIKCGTFGATSLQQRYLATGDFG 89 (357)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEE-EEESSCEEEEECTTCCTTTCCEEEEETT
T ss_pred hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceee-ecccCcEEEEEEcCCCCCCceEEEecCC
Confidence 3456789999999999995 5667776 9999999999884333333 379999999999998 7999999999
Q ss_pred CcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCC-----------------Cce
Q 001349 877 KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSK-----------------YPK 939 (1094)
Q Consensus 877 gtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~-----------------~v~ 939 (1094)
|+|++||+.+++........+...|.++.+.+. ++|+|+++.+++++.+|.+++|+... .+.
T Consensus 90 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~ 168 (357)
T 3i2n_A 90 GNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGG-LGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCW 168 (357)
T ss_dssp SCEEEECTTSCSSCSEEECCCSSCEEEEEEESG-GGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEE
T ss_pred CeEEEEeCCCCCccEEEEEecccceEEEeeccc-cccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceE
Confidence 999999999876223334467888888864331 23789999999999999999998521 466
Q ss_pred EEEE----e--CCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeC---CccEEEEEECCCCEEEEEE
Q 001349 940 CLAL----V--QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN---GLVYTASTSLDGAAVKMWS 1010 (1094)
Q Consensus 940 ~l~~----s--~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~---~~~~las~s~Dg~~I~iwd 1010 (1094)
++.+ + +..+++|+.||.|++||++++... ....|...|.+++|+| ++.++++++.|| .|++||
T Consensus 169 ~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg-~i~i~d 240 (357)
T 3i2n_A 169 TVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALR-------WETNIKNGVCSLEFDRKDISMNKLVATSLEG-KFHVFD 240 (357)
T ss_dssp EEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEE-------EEEECSSCEEEEEESCSSSSCCEEEEEESTT-EEEEEE
T ss_pred EEEEEeccCCCCCEEEEEccCCeEEEEECccCcee-------eecCCCCceEEEEcCCCCCCCCEEEEECCCC-eEEEEe
Confidence 6773 2 356999999999999999998864 2345778999999999 899999999987 999999
Q ss_pred CCCCeEEEEe------cCCCCEEEEEEeCC---EEEEEEcCCeEEEEECCCC-------------------cEEEEeccc
Q 001349 1011 TSNYNMVGSL------PTLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQ-------------------IRIETLQTG 1062 (1094)
Q Consensus 1011 ~~~~~~~~~~------~~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~-------------------~~~~~l~~~ 1062 (1094)
++++.....+ .|...|.+++|+|+ ++++|+.||.|++||+.++ +.+..+ .+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~ 319 (357)
T 3i2n_A 241 MRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNV-TL 319 (357)
T ss_dssp EEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEE-EC
T ss_pred CcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecc-cc
Confidence 9876654333 37889999999998 6999999999999998754 356666 58
Q ss_pred CCcceEEEEEcCCCCEEE-EEeCCCcEEEEeCC
Q 001349 1063 TSGKVQCMALDDNEEFLV-IGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1063 h~~~I~~l~~Spdg~~L~-sgs~DG~I~iWdls 1094 (1094)
|.+.|++++|+|+|++|+ +++.||.|++||++
T Consensus 320 ~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 320 STQPISSLDWSPDKRGLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp CSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred CCCCeeEEEEcCCCCeEEEEecCCCcEEEEECC
Confidence 999999999999999998 89999999999974
No 59
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.97 E-value=8.4e-30 Score=293.49 Aligned_cols=264 Identities=16% Similarity=0.200 Sum_probs=194.4
Q ss_pred cCcEEEEeeCCCCeEEEeCCcceeecccCCCcEEEEEEeCC--EEEEEEC------CCeEEEEecCCCcc--eeEEEecc
Q 001349 784 EMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD--KIFSGHS------DGTIKVWTGRGSIL--HLIQQIRE 853 (1094)
Q Consensus 784 d~~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~fspd--~LaSgs~------Dg~I~vWd~~t~~~--~~~~~l~~ 853 (1094)
+..+ +.++.+.....|+... .....|.+.|++++|+|| +|++|+. ||+|++|+..++.. .......+
T Consensus 16 ~~~~-~~~~g~~~~~~w~~p~--~~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~ 92 (357)
T 4g56_B 16 ENLY-FQSNGSSKGSAWGRPV--TAPACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQ 92 (357)
T ss_dssp ---------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEE
T ss_pred cceE-EecCCCccccccCCCC--CCcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCC
Confidence 3434 4444566778898763 234579999999999998 9999997 78899999876621 22334457
Q ss_pred cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceE---EEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEE
Q 001349 854 HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIH---CVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTK 930 (1094)
Q Consensus 854 H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~---~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~ 930 (1094)
|...|++++|+|++. +++++.||+|+|||+.+++.. ......|...|.+++ |+|+|+
T Consensus 93 ~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~-------~spdg~------------ 152 (357)
T 4g56_B 93 TEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLS-------VFSDGT------------ 152 (357)
T ss_dssp CSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEE-------ECSSSS------------
T ss_pred CCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEE-------ECCCCC------------
Confidence 999999999999975 556888999999999887522 122334566677766 777766
Q ss_pred EEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCc-cEEEEEECCCCEEEEE
Q 001349 931 LLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGL-VYTASTSLDGAAVKMW 1009 (1094)
Q Consensus 931 l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~-~~las~s~Dg~~I~iw 1009 (1094)
.+++|+.||.|++||+.+++.. ..+.+|...|++++|++++ .++++++.|+ +|++|
T Consensus 153 ----------------~l~sgs~dg~v~iwd~~~~~~~------~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg-~v~~w 209 (357)
T 4g56_B 153 ----------------QAVSGGKDFSVKVWDLSQKAVL------KSYNAHSSEVNCVAACPGKDTIFLSCGEDG-RILLW 209 (357)
T ss_dssp ----------------EEEEEETTSCEEEEETTTTEEE------EEECCCSSCEEEEEECTTCSSCEEEEETTS-CEEEC
T ss_pred ----------------EEEEEeCCCeEEEEECCCCcEE------EEEcCCCCCEEEEEEccCCCceeeeeccCC-ceEEE
Confidence 4889999999999999999887 5667899999999999876 4778888886 99999
Q ss_pred ECCCCeEEEEec---CCCCEEEEEEeCC---EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCC-CEEEEE
Q 001349 1010 STSNYNMVGSLP---TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNE-EFLVIG 1082 (1094)
Q Consensus 1010 d~~~~~~~~~~~---~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg-~~L~sg 1082 (1094)
|++++++...+. +...+.+++|+|+ ++++|+.|+.|++||+.+++.+..+ .+|...|++++|+|++ ++|++|
T Consensus 210 d~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~-~~~~~~v~~l~~sp~~~~~lasg 288 (357)
T 4g56_B 210 DTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTS-AVHSQNITGLAYSYHSSPFLASI 288 (357)
T ss_dssp CTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEE-CCCSSCEEEEEECSSSSCCEEEE
T ss_pred ECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEE-eccceeEEEEEEcCCCCCEEEEE
Confidence 999988776654 5677999999986 7999999999999999999999999 5899999999999987 579999
Q ss_pred eCCCcEEEEeCC
Q 001349 1083 TSDGRIQAWGLS 1094 (1094)
Q Consensus 1083 s~DG~I~iWdls 1094 (1094)
+.||+|+|||+.
T Consensus 289 s~D~~i~iwd~~ 300 (357)
T 4g56_B 289 SEDCTVAVLDAD 300 (357)
T ss_dssp ETTSCEEEECTT
T ss_pred eCCCEEEEEECC
Confidence 999999999973
No 60
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.9e-30 Score=301.16 Aligned_cols=277 Identities=11% Similarity=0.149 Sum_probs=220.9
Q ss_pred hhhccccccccc-cCcEEEEeeCCCCeEEEeCCc---c---e-eecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecC
Q 001349 772 LRELRKYSPLAF-EMVKVLSNGHDSSADFWNHRE---L---V-HVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGR 841 (1094)
Q Consensus 772 ~~~~~~~~~~~~-d~~~l~s~s~dg~I~vWd~~~---~---~-~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~ 841 (1094)
|...+....+.+ ++.++++|+.||+|++||... . . ....+|.+.|++++|+|+ +|++|+.||+|++||+.
T Consensus 62 h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~ 141 (437)
T 3gre_A 62 EPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVN 141 (437)
T ss_dssp TTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEE
T ss_pred CCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEec
Confidence 444556677888 899999999999999999864 1 1 222269999999999995 99999999999999994
Q ss_pred ---CCcceeEEEec----------c--cCCCeEEEE--EecCCCEEEEEeCCCcEEEEECCCCceE-EEEecccCcccee
Q 001349 842 ---GSILHLIQQIR----------E--HTKAVTGLA--ILQSGEMLYSGSLDKTARVWSIGNEEIH-CVQVHDIKDQIQN 903 (1094)
Q Consensus 842 ---t~~~~~~~~l~----------~--H~~~V~sv~--fspdg~~LaSgs~DgtI~vWdi~~~~~~-~~~~~~~~~~V~~ 903 (1094)
++ .....+. . +...+.++. +++++.+|++|+.||+|++||+++++.. .+....+...|.+
T Consensus 142 ~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~ 219 (437)
T 3gre_A 142 HYQQE--SEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSS 219 (437)
T ss_dssp EEEET--TEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEE
T ss_pred cccCC--ceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEE
Confidence 44 2333222 2 556677777 5578999999999999999999987632 2222225677777
Q ss_pred eeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeec-CCCC
Q 001349 904 LAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLL-GKAN 982 (1094)
Q Consensus 904 v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~-~h~~ 982 (1094)
++ |+|++.. +++|+.||.|++||+++++.+. .+. +|..
T Consensus 220 ~~-------~s~~~~~----------------------------l~s~~~dg~i~iwd~~~~~~~~------~~~~~~~~ 258 (437)
T 3gre_A 220 IC-------IDEECCV----------------------------LILGTTRGIIDIWDIRFNVLIR------SWSFGDHA 258 (437)
T ss_dssp EE-------ECTTSCE----------------------------EEEEETTSCEEEEETTTTEEEE------EEBCTTCE
T ss_pred EE-------ECCCCCE----------------------------EEEEcCCCeEEEEEcCCccEEE------EEecCCCC
Confidence 77 7777764 8899999999999999988773 332 5677
Q ss_pred CeEEEEEe----CCccEEEEEECCCCEEEEEECCCCeEEEEec---------------------------CCCCEEEEEE
Q 001349 983 PVHALQVH----NGLVYTASTSLDGAAVKMWSTSNYNMVGSLP---------------------------TLSEVRAMVV 1031 (1094)
Q Consensus 983 ~V~sl~fs----~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~---------------------------~~~~v~~l~~ 1031 (1094)
+|++++|+ +++.++++++.|| .|++||+++++++..+. |...|++++|
T Consensus 259 ~v~~~~~~~~~s~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~ 337 (437)
T 3gre_A 259 PITHVEVCQFYGKNSVIVVGGSSKT-FLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISV 337 (437)
T ss_dssp EEEEEEECTTTCTTEEEEEEESTTE-EEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEE
T ss_pred ceEEEEeccccCCCccEEEEEcCCC-cEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEE
Confidence 89999665 5688999999886 99999999999888776 3345888999
Q ss_pred eCC-EEEEEEcCCeEEEEECCCCcEEEEecc------------------------------------cCCcceEEEEEcC
Q 001349 1032 SSE-LVYLGCKGGTVEIWDQKRQIRIETLQT------------------------------------GTSGKVQCMALDD 1074 (1094)
Q Consensus 1032 spd-~l~sgs~dg~I~vwd~~t~~~~~~l~~------------------------------------~h~~~I~~l~~Sp 1074 (1094)
+++ ++++|+.||.|++||+.+++....+.. .|.+.|++++|++
T Consensus 338 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~ 417 (437)
T 3gre_A 338 SNDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCE 417 (437)
T ss_dssp ETTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEE
T ss_pred CCceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeec
Confidence 966 899999999999999999887776642 1888999999999
Q ss_pred C--CCEEEEEeCCCcEEEEe
Q 001349 1075 N--EEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1075 d--g~~L~sgs~DG~I~iWd 1092 (1094)
+ +.+|++|+.||+|+||+
T Consensus 418 ~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 418 VDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp SSSSEEEEEEETTSCEEEEC
T ss_pred cCCceEEEEEcCCceEEEeC
Confidence 8 78999999999999995
No 61
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.6e-29 Score=281.24 Aligned_cols=264 Identities=15% Similarity=0.236 Sum_probs=201.6
Q ss_pred cccccCcEEEEeeCCCCeEEEeCCc----ceeec-cc-CCCcEEEEEEeCC--EEEEEECCCeEEEEecCCC-----cce
Q 001349 780 PLAFEMVKVLSNGHDSSADFWNHRE----LVHVD-SS-ENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGS-----ILH 846 (1094)
Q Consensus 780 ~~~~d~~~l~s~s~dg~I~vWd~~~----~~~~~-~~-h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~-----~~~ 846 (1094)
.+.+.+.++++|+.|++|++|++.. ....+ .+ |.+.|.+++|+|+ +|++|+.||+|++||+.+. ...
T Consensus 19 ~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~ 98 (330)
T 2hes_X 19 SFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMD 98 (330)
T ss_dssp EEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCE
T ss_pred eeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccce
Confidence 3445556999999999999999873 23333 34 9999999999996 9999999999999998532 125
Q ss_pred eEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC-c-eEEE-EecccCccceeeeecCceEEEeeCCCeEEEE
Q 001349 847 LIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNE-E-IHCV-QVHDIKDQIQNLAVSNSILCFIPQGAGIKVH 923 (1094)
Q Consensus 847 ~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~-~-~~~~-~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~ 923 (1094)
.+..+.+|.+.|++++|+|+|++|++|+.|++|++||+... . ..++ ....|...|.++. |+|++..++++
T Consensus 99 ~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~-------~~p~~~~l~s~ 171 (330)
T 2hes_X 99 LLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI-------WHPSEALLASS 171 (330)
T ss_dssp EEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE-------ECSSSSEEEEE
T ss_pred eEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE-------ECCCCCEEEEE
Confidence 67888999999999999999999999999999999999532 2 2333 3345778888888 99999999999
Q ss_pred EeCCeEEEEc--------------CCCCceEEEEeCC----EEEEEEcCCeEEEEECCCCcee--EEeccceeecC-CCC
Q 001349 924 LRNGKTKLLN--------------SSKYPKCLALVQG----KVYCGCQDGAIQEIDLATGTFA--TIQTGHRKLLG-KAN 982 (1094)
Q Consensus 924 ~~~g~i~l~~--------------~~~~v~~l~~s~~----~l~sgs~Dg~I~iwDl~~~~~~--~~~~~~~~~~~-h~~ 982 (1094)
+.|+.+++|+ |...|.++.|+++ .+++|+.|++|++||+.++... ........+.+ |..
T Consensus 172 s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~ 251 (330)
T 2hes_X 172 SYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKR 251 (330)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSS
T ss_pred cCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccccccc
Confidence 9999999996 3457889999864 5899999999999998754210 00000123333 889
Q ss_pred CeEEEEEeCCccEEEEEECCCCEEEEEECCCCe--EEEEe-c-CCC-CEEEEEEeC--C--EEEEEEcCCeEEEEECCC
Q 001349 983 PVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN--MVGSL-P-TLS-EVRAMVVSS--E--LVYLGCKGGTVEIWDQKR 1052 (1094)
Q Consensus 983 ~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~--~~~~~-~-~~~-~v~~l~~sp--d--~l~sgs~dg~I~vwd~~t 1052 (1094)
.|.+++|++++ ++++++.|| +|++||..++. ..... . |.. .|.+++|+| + +|++|+.||+|++||+.+
T Consensus 252 ~v~~v~~s~~~-~l~s~~~dg-~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 252 QVYNVAWGFNG-LIASVGADG-VLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp CEEEEEECTTS-CEEEEETTS-CEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ceEEEEEcCCC-EEEEEeCCC-EEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 99999999776 678888886 99999998774 33333 2 555 899999998 4 799999999999999864
No 62
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.97 E-value=1e-28 Score=283.97 Aligned_cols=266 Identities=14% Similarity=0.147 Sum_probs=224.6
Q ss_pred HhhhccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCC---
Q 001349 771 GLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGS--- 843 (1094)
Q Consensus 771 ~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~--- 843 (1094)
+|...+....+.+++.+|++|+.||+|++||.. ........|...|.+++|+|+ ++++|+.|+++++|++...
T Consensus 62 gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~ 141 (354)
T 2pbi_B 62 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNE 141 (354)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTC
T ss_pred CCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccc
Confidence 455556677788899999999999999999976 445667789999999999997 9999999999999998643
Q ss_pred -cceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEee--CCCeE
Q 001349 844 -ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIP--QGAGI 920 (1094)
Q Consensus 844 -~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fsp--dg~~l 920 (1094)
.......+.+|.+.|.++.|+|++..|++++.||+|++||+.+++.. .....|...|.++. |+| +|..+
T Consensus 142 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~-~~~~~h~~~v~~~~-------~~~~~~g~~l 213 (354)
T 2pbi_B 142 NMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLL-QSFHGHGADVLCLD-------LAPSETGNTF 213 (354)
T ss_dssp CSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEE-EEEECCSSCEEEEE-------ECCCSSCCEE
T ss_pred cccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEE-EEEcCCCCCeEEEE-------EEeCCCCCEE
Confidence 12345667789999999999999999999999999999999998632 22335677788877 655 67899
Q ss_pred EEEEeCCeEEEEcC------------CCCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEE
Q 001349 921 KVHLRNGKTKLLNS------------SKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHA 986 (1094)
Q Consensus 921 ~~~~~~g~i~l~~~------------~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~s 986 (1094)
++++.||.+++|+. ...|.+++|++ ..+++|+.|++|++||++++.....+.. ..+...+.+
T Consensus 214 ~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~----~~~~~~~~~ 289 (354)
T 2pbi_B 214 VSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSK----ESIIFGASS 289 (354)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC----TTCCSCEEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC----CCcccceeE
Confidence 99999999999984 45689999985 5799999999999999998876643321 233457899
Q ss_pred EEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEE
Q 001349 987 LQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWD 1049 (1094)
Q Consensus 987 l~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd 1049 (1094)
++|+|++.++++++.|+ +|++||+.++..+..+. |...|++++|+|+ ++++|+.||+|+||+
T Consensus 290 ~~~s~~g~~l~~g~~d~-~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 290 VDFSLSGRLLFAGYNDY-TINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEECTTSSEEEEEETTS-CEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEeCCCCEEEEEECCC-cEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 99999999999999986 99999999999888887 7889999999998 899999999999996
No 63
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.97 E-value=1.3e-28 Score=302.91 Aligned_cols=297 Identities=14% Similarity=0.170 Sum_probs=255.1
Q ss_pred hhccccccccccCcEEEEeeCCCCeEEEeCC------cceeecccCCCc-EEEEEEeC--C--EEEEEECCCeEEEEecC
Q 001349 773 RELRKYSPLAFEMVKVLSNGHDSSADFWNHR------ELVHVDSSENGK-VLSIACFR--D--KIFSGHSDGTIKVWTGR 841 (1094)
Q Consensus 773 ~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~------~~~~~~~~h~~~-V~~l~fsp--d--~LaSgs~Dg~I~vWd~~ 841 (1094)
...+....+++++.++++++ ++.|++|+.. .....+.+|.+. |++++|+| + +|++|+.||+|++||+.
T Consensus 18 ~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~ 96 (615)
T 1pgu_A 18 RNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWT 96 (615)
T ss_dssp TTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEE
T ss_pred cCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCC
Confidence 34456677889999999998 8899999987 356778899999 99999999 6 99999999999999997
Q ss_pred CC------cceeEEEecccCCCeEEEEEecCCCEEEEEeCC----CcEEEEECCCCceEEEEecccCccceeeeecCceE
Q 001349 842 GS------ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD----KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSIL 911 (1094)
Q Consensus 842 t~------~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~D----gtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~ 911 (1094)
++ ....+..+..|...|.+++|+|++++|++++.| +.|++||... .......+...|.++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~---~~~~~~~~~~~v~~~~------ 167 (615)
T 1pgu_A 97 FDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGN---SLGEVSGHSQRINACH------ 167 (615)
T ss_dssp EEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCC---EEEECCSCSSCEEEEE------
T ss_pred CCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCC---cceeeecCCccEEEEE------
Confidence 55 446788889999999999999999999999988 7899998332 3334456778888888
Q ss_pred EEeeCCC-eEEEEEeCCeEEEEcC------------CC---CceEEEEeCC---EEEEEEcCCeEEEEECCCCceeEEec
Q 001349 912 CFIPQGA-GIKVHLRNGKTKLLNS------------SK---YPKCLALVQG---KVYCGCQDGAIQEIDLATGTFATIQT 972 (1094)
Q Consensus 912 ~fspdg~-~l~~~~~~g~i~l~~~------------~~---~v~~l~~s~~---~l~sgs~Dg~I~iwDl~~~~~~~~~~ 972 (1094)
|+|++. .+++++.++.+++|+. .. .|.++.|+++ .+++|+.||.|++||+.+++...
T Consensus 168 -~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~--- 243 (615)
T 1pgu_A 168 -LKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK--- 243 (615)
T ss_dssp -ECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEE---
T ss_pred -ECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeE---
Confidence 999998 7899999999999983 34 7999999865 69999999999999999998873
Q ss_pred cceee-c---CCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCC-----CCEEEEEEeC-CEEEEEEcC
Q 001349 973 GHRKL-L---GKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTL-----SEVRAMVVSS-ELVYLGCKG 1042 (1094)
Q Consensus 973 ~~~~~-~---~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~-----~~v~~l~~sp-d~l~sgs~d 1042 (1094)
.+ . +|...|.++.|+ ++.++++++.|+ .|++||+.+++.+..+... ..+.++.++. +++++|+.|
T Consensus 244 ---~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 318 (615)
T 1pgu_A 244 ---YIEDDQEPVQGGIFALSWL-DSQKFATVGADA-TIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD 318 (615)
T ss_dssp ---ECCBTTBCCCSCEEEEEES-SSSEEEEEETTS-EEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETT
T ss_pred ---EecccccccCCceEEEEEc-CCCEEEEEcCCC-cEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECC
Confidence 34 4 788999999999 999999999996 9999999999999888844 6678888853 399999999
Q ss_pred CeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1043 GTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1043 g~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
|.|++||+.+++.+..+ .+|.+.|++++| |+ +++++.||.|++|++
T Consensus 319 g~i~~~d~~~~~~~~~~-~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~ 364 (615)
T 1pgu_A 319 GTLNFYELGHDEVLKTI-SGHNKGITALTV-NP---LISGSYDGRIMEWSS 364 (615)
T ss_dssp SCEEEEETTEEEEEEEE-CCCSSCEEEEET-TT---TEEEETTSCEEETTT
T ss_pred CCEEEEECCCCcEEEEE-eCCCCCEEEEEe-cC---cEEECCCCeEEEEEc
Confidence 99999999999999888 589899999999 87 888888888888875
No 64
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.97 E-value=1.1e-29 Score=294.97 Aligned_cols=276 Identities=14% Similarity=0.137 Sum_probs=228.2
Q ss_pred HhhhccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCC---
Q 001349 771 GLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGS--- 843 (1094)
Q Consensus 771 ~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~--- 843 (1094)
+|...+....+.+++.+|++|+.||+|++||.. .....+.+|...|.+++|+|+ +|++|+.|++|++||+.+.
T Consensus 64 gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~ 143 (380)
T 3iz6_a 64 GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADR 143 (380)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSC
T ss_pred ccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccc
Confidence 455556677788899999999999999999987 456678899999999999997 9999999999999998753
Q ss_pred --cceeEEEecccCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCceEEEEe----cccCccceeeeecCceEEEee-
Q 001349 844 --ILHLIQQIREHTKAVTGLAILQS-GEMLYSGSLDKTARVWSIGNEEIHCVQV----HDIKDQIQNLAVSNSILCFIP- 915 (1094)
Q Consensus 844 --~~~~~~~l~~H~~~V~sv~fspd-g~~LaSgs~DgtI~vWdi~~~~~~~~~~----~~~~~~V~~v~~~~~~~~fsp- 915 (1094)
.......+.+|.+.|.++.|+|+ +..|++|+.|++|++||+.+++...... ..+...|.++. |.+
T Consensus 144 ~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~-------~~~~ 216 (380)
T 3iz6_a 144 DGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLS-------INSL 216 (380)
T ss_dssp CCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEE-------ECSS
T ss_pred cCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEE-------eecC
Confidence 12345667899999999999996 5679999999999999999986333221 24566777776 655
Q ss_pred CCCeEEEEEeCCeEEEEcC-------------CCCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEecccee-ecC
Q 001349 916 QGAGIKVHLRNGKTKLLNS-------------SKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRK-LLG 979 (1094)
Q Consensus 916 dg~~l~~~~~~g~i~l~~~-------------~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~-~~~ 979 (1094)
++..+++++.|+.+++|+. ...|.+++|++ ..+++|+.||+|++||++++.....+..... ...
T Consensus 217 ~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~ 296 (380)
T 3iz6_a 217 NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDN 296 (380)
T ss_dssp SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCC
T ss_pred CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccccc
Confidence 7899999999999999984 34688999986 4699999999999999999988765443211 122
Q ss_pred CCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEe----c-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCC
Q 001349 980 KANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSL----P-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKR 1052 (1094)
Q Consensus 980 h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~----~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t 1052 (1094)
+...|++++|+|++.++++++.|| .|++||+.+++.+..+ . |...|.+++|+|+ ++++|+.||+|++|++..
T Consensus 297 ~~~~v~~~~~s~~g~~l~~g~~dg-~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 297 ELPIVTSVAFSISGRLLFAGYSNG-DCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp SSCSCSEEEECSSSSEEEEECTTS-CEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred ccCceEEEEECCCCCEEEEEECCC-CEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 334589999999999999999987 9999999999888776 2 6788999999998 899999999999999876
Q ss_pred Cc
Q 001349 1053 QI 1054 (1094)
Q Consensus 1053 ~~ 1054 (1094)
.+
T Consensus 376 ~~ 377 (380)
T 3iz6_a 376 HR 377 (380)
T ss_dssp SS
T ss_pred Cc
Confidence 54
No 65
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=8.2e-29 Score=287.82 Aligned_cols=289 Identities=17% Similarity=0.185 Sum_probs=228.9
Q ss_pred CCeEEEeCC--cceeecccCCCcEEEEEEeC-C--EEEEEECCCeEEEEecCCCcceeEEEe-----------cccCCCe
Q 001349 795 SSADFWNHR--ELVHVDSSENGKVLSIACFR-D--KIFSGHSDGTIKVWTGRGSILHLIQQI-----------REHTKAV 858 (1094)
Q Consensus 795 g~I~vWd~~--~~~~~~~~h~~~V~~l~fsp-d--~LaSgs~Dg~I~vWd~~t~~~~~~~~l-----------~~H~~~V 858 (1094)
+.+++|+.. .....+.+|.+.|++++|+| + +|++|+.||+|++||+.++........ .+|...|
T Consensus 23 ~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 102 (408)
T 4a11_B 23 STRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSV 102 (408)
T ss_dssp HHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCE
T ss_pred CcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcE
Confidence 345566654 56677889999999999999 5 999999999999999998743222221 2599999
Q ss_pred EEEEEec-CCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEee---CCCeEEEEEeCCeEEEEcC
Q 001349 859 TGLAILQ-SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIP---QGAGIKVHLRNGKTKLLNS 934 (1094)
Q Consensus 859 ~sv~fsp-dg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fsp---dg~~l~~~~~~g~i~l~~~ 934 (1094)
++++|+| ++.+|++++.||+|++||+.+++ ......+...+..+. |+| ++..++++..++.+.+|+.
T Consensus 103 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~v~~~d~ 173 (408)
T 4a11_B 103 ETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ--TADVFNFEETVYSHH-------MSPVSTKHCLVAVGTRGPKVQLCDL 173 (408)
T ss_dssp EEEEECTTCTTCEEEEETTSEEEEEETTTTE--EEEEEECSSCEEEEE-------ECSSCSSCCEEEEEESSSSEEEEES
T ss_pred EEEEEccCCCcEEEEEeCCCeEEEeeCCCCc--cceeccCCCceeeeE-------eecCCCCCcEEEEEcCCCeEEEEeC
Confidence 9999999 78899999999999999999985 333344567777777 555 5568999999999999984
Q ss_pred ------------CCCceEEEEeCC---EEEEEEcCCeEEEEECCCCcee-EEec---------cceeecCCCCCeEEEEE
Q 001349 935 ------------SKYPKCLALVQG---KVYCGCQDGAIQEIDLATGTFA-TIQT---------GHRKLLGKANPVHALQV 989 (1094)
Q Consensus 935 ------------~~~v~~l~~s~~---~l~sgs~Dg~I~iwDl~~~~~~-~~~~---------~~~~~~~h~~~V~sl~f 989 (1094)
...|.++.|+++ .+++|+.||.|++||++++... ..+. ......+|...|.+++|
T Consensus 174 ~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 253 (408)
T 4a11_B 174 KSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCF 253 (408)
T ss_dssp SSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEE
T ss_pred CCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEE
Confidence 457899999863 4889999999999999887622 2111 01123578899999999
Q ss_pred eCCccEEEEEECCCCEEEEEECCCCeEEEEecC-------CCCEEEEEEeC-CEEEEEEcCCeEEEEECCCCcEEEEecc
Q 001349 990 HNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT-------LSEVRAMVVSS-ELVYLGCKGGTVEIWDQKRQIRIETLQT 1061 (1094)
Q Consensus 990 s~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~-------~~~v~~l~~sp-d~l~sgs~dg~I~vwd~~t~~~~~~l~~ 1061 (1094)
+|++.++++++.|| .|++||+.+++....+.. ........... ..+++++.++.|++||+.+++.+..+ .
T Consensus 254 ~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~ 331 (408)
T 4a11_B 254 TSDGLHLLTVGTDN-RMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITML-K 331 (408)
T ss_dssp CTTSSEEEEEETTS-CEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEE-C
T ss_pred cCCCCEEEEecCCC-eEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeee-c
Confidence 99999999999997 999999998876544431 11111122222 26777888999999999999999999 5
Q ss_pred cCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1062 GTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1062 ~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
+|.+.|++++|+|++++|++|+.||.|++||+.
T Consensus 332 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 364 (408)
T 4a11_B 332 GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPS 364 (408)
T ss_dssp CCSSCEEEEEEETTTTEEEEEETTSCEEEEEEC
T ss_pred cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCC
Confidence 899999999999999999999999999999973
No 66
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.97 E-value=8.1e-28 Score=275.01 Aligned_cols=244 Identities=19% Similarity=0.299 Sum_probs=198.2
Q ss_pred ceeecccCCCcEEEEEE-----eC-C--EEEEEECCCeEEEEecCCCc-----ceeEEEecccCCCeEEEEEecCCCEEE
Q 001349 805 LVHVDSSENGKVLSIAC-----FR-D--KIFSGHSDGTIKVWTGRGSI-----LHLIQQIREHTKAVTGLAILQSGEMLY 871 (1094)
Q Consensus 805 ~~~~~~~h~~~V~~l~f-----sp-d--~LaSgs~Dg~I~vWd~~t~~-----~~~~~~l~~H~~~V~sv~fspdg~~La 871 (1094)
....+.+|.+.|++++| ++ + +|+||+.||+|++||+.++. ..+...+.+|...|++++|+|++.+++
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~ 92 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAI 92 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEE
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEE
Confidence 45678899999999999 55 4 99999999999999987542 145678899999999999999999999
Q ss_pred EEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEE
Q 001349 872 SGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCG 951 (1094)
Q Consensus 872 Sgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sg 951 (1094)
+|+.|++|++||+.+++. ......|...|.++. |+|+|+. +++|
T Consensus 93 s~s~D~~v~lwd~~~~~~-~~~~~~h~~~v~~v~-------~sp~~~~----------------------------l~s~ 136 (343)
T 2xzm_R 93 SSSWDKTLRLWDLRTGTT-YKRFVGHQSEVYSVA-------FSPDNRQ----------------------------ILSA 136 (343)
T ss_dssp EEETTSEEEEEETTSSCE-EEEEECCCSCEEEEE-------ECSSTTE----------------------------EEEE
T ss_pred EEcCCCcEEEEECCCCcE-EEEEcCCCCcEEEEE-------ECCCCCE----------------------------EEEE
Confidence 999999999999998752 222334677787777 7887774 8889
Q ss_pred EcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCc----------cEEEEEECCCCEEEEEECCCCeEEEEec
Q 001349 952 CQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGL----------VYTASTSLDGAAVKMWSTSNYNMVGSLP 1021 (1094)
Q Consensus 952 s~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~----------~~las~s~Dg~~I~iwd~~~~~~~~~~~ 1021 (1094)
+.|++|++||+....... . ....+|...|.++.|+|++ .++++++.|+ +|++||. ++.....+.
T Consensus 137 ~~d~~i~~wd~~~~~~~~-~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~-~i~iwd~-~~~~~~~~~ 210 (343)
T 2xzm_R 137 GAEREIKLWNILGECKFS-S---AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDG-RLKVWNT-NFQIRYTFK 210 (343)
T ss_dssp ETTSCEEEEESSSCEEEE-C---CTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTS-EEEEEET-TTEEEEEEE
T ss_pred cCCCEEEEEeccCCceee-e---ecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCC-EEEEEcC-CCceeEEEc
Confidence 999999999998433221 1 1234788999999999886 6899999997 9999994 556666665
Q ss_pred -CCCCEEEEEEeCC--EEEEEEcCCeEEEEECC-CCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1022 -TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQK-RQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1022 -~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~-t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
|...|.+++|+|+ ++++|+.||.|++||+. .......+. +...|++++|+|++.+++++ .|+.|++|++
T Consensus 211 ~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~--~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~ 283 (343)
T 2xzm_R 211 AHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD--AGSTINQIAFNPKLQWVAVG-TDQGVKIFNL 283 (343)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE--CSSCEEEEEECSSSCEEEEE-ESSCEEEEES
T ss_pred CccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec--CCCcEEEEEECCCCCEEEEE-CCCCEEEEEe
Confidence 7889999999998 89999999999999994 444555553 45579999999999887655 5888999997
No 67
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=5.2e-28 Score=276.59 Aligned_cols=274 Identities=12% Similarity=0.184 Sum_probs=225.8
Q ss_pred cceeecccCCCcEEEEEEeCC-----EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCc
Q 001349 804 ELVHVDSSENGKVLSIACFRD-----KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKT 878 (1094)
Q Consensus 804 ~~~~~~~~h~~~V~~l~fspd-----~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~Dgt 878 (1094)
.....+.+|.+.|++++|+|+ +|++|+.||+|++||+.+........+.+|.+.|++++|+|++++|++++.||+
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 109 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKT 109 (368)
T ss_dssp CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCc
Confidence 456678899999999999984 899999999999999997332444788899999999999999999999999999
Q ss_pred EEEEECCCCceEEEEecccCccceeeeecCceEEE--eeCCCeEEEEEeCCeEEEEcCC-----------CCceEEEEeC
Q 001349 879 ARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCF--IPQGAGIKVHLRNGKTKLLNSS-----------KYPKCLALVQ 945 (1094)
Q Consensus 879 I~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~f--spdg~~l~~~~~~g~i~l~~~~-----------~~v~~l~~s~ 945 (1094)
|++||+.+++. .....+...|.++. | +|++..+++++.+|.+++|+.. ..+.++.+.+
T Consensus 110 v~iwd~~~~~~--~~~~~~~~~v~~~~-------~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 180 (368)
T 3mmy_A 110 AKMWDLSSNQA--IQIAQHDAPVKTIH-------WIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY 180 (368)
T ss_dssp EEEEETTTTEE--EEEEECSSCEEEEE-------EEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEET
T ss_pred EEEEEcCCCCc--eeeccccCceEEEE-------EEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecC
Confidence 99999999853 33456788899988 7 8899999999999999999953 3456677778
Q ss_pred CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccE----EEEEECCCCEEEEEECCCC---eEEE
Q 001349 946 GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVY----TASTSLDGAAVKMWSTSNY---NMVG 1018 (1094)
Q Consensus 946 ~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~----las~s~Dg~~I~iwd~~~~---~~~~ 1018 (1094)
+.+++++.++.+.+||+......... ....+...+.++.+.++... +++++.|| .|++||+... ....
T Consensus 181 ~~~~~~~~~~~i~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg-~i~i~~~~~~~~~~~~~ 255 (368)
T 3mmy_A 181 PMAVVATAERGLIVYQLENQPSEFRR----IESPLKHQHRCVAIFKDKQNKPTGFALGSIEG-RVAIHYINPPNPAKDNF 255 (368)
T ss_dssp TEEEEEEGGGCEEEEECSSSCEEEEE----CCCSCSSCEEEEEEEECTTSCEEEEEEEETTS-EEEEEESSCSCHHHHSE
T ss_pred CeeEEEeCCCcEEEEEeccccchhhh----ccccccCCCceEEEcccCCCCCCeEEEecCCC-cEEEEecCCCCccccce
Confidence 88999999999999999887654321 11223445666666544333 88888886 9999999887 4455
Q ss_pred EecCC-C------------CEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEe
Q 001349 1019 SLPTL-S------------EVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGT 1083 (1094)
Q Consensus 1019 ~~~~~-~------------~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs 1083 (1094)
.+..+ . .|.+++|+|+ ++++|+.||.|++||+.+++++..+ .+|...|++++|+|+|++|++|+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~~s 334 (368)
T 3mmy_A 256 TFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTS-EQLDQPISACCFNHNGNIFAYAS 334 (368)
T ss_dssp EEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC-CCCSSCEEEEEECTTSSCEEEEE
T ss_pred eeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEe-cCCCCCceEEEECCCCCeEEEEe
Confidence 55532 2 6999999998 8999999999999999999999999 58999999999999999999999
Q ss_pred CCCcEEEEe
Q 001349 1084 SDGRIQAWG 1092 (1094)
Q Consensus 1084 ~DG~I~iWd 1092 (1094)
.|+..+.|+
T Consensus 335 ~d~~~~~~~ 343 (368)
T 3mmy_A 335 SYDWSKGHE 343 (368)
T ss_dssp CCCSTTCGG
T ss_pred ccccccccc
Confidence 988655443
No 68
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=6.2e-28 Score=272.74 Aligned_cols=252 Identities=19% Similarity=0.275 Sum_probs=203.9
Q ss_pred eeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCc--ceeEEEecccCCCeEEEEEec--CCCEEEEEeCCCcE
Q 001349 806 VHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI--LHLIQQIREHTKAVTGLAILQ--SGEMLYSGSLDKTA 879 (1094)
Q Consensus 806 ~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~--~~~~~~l~~H~~~V~sv~fsp--dg~~LaSgs~DgtI 879 (1094)
...+.+|.+.|++++|+|+ +|++|+.||+|++||+.++. ......+.+|...|++++|+| ++++|++|+.||+|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 3567899999999999996 99999999999999998652 246777889999999999999 69999999999999
Q ss_pred EEEECCCCce--------EEEEecccCccceeeeecCceEEEeeC--CCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEE
Q 001349 880 RVWSIGNEEI--------HCVQVHDIKDQIQNLAVSNSILCFIPQ--GAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVY 949 (1094)
Q Consensus 880 ~vWdi~~~~~--------~~~~~~~~~~~V~~v~~~~~~~~fspd--g~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~ 949 (1094)
++||+.+++. .......+...|.++. |+|+ +. .++
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~~~----------------------------~l~ 128 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVK-------FAPAHLGL----------------------------KLA 128 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEE-------ECCGGGCS----------------------------EEE
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEE-------EcCCCCCc----------------------------EEE
Confidence 9999988631 1222223445555555 5555 43 488
Q ss_pred EEEcCCeEEEEECCCCceeEEeccc-------eeecCCCCCeEEEEEeCC---ccEEEEEECCCCEEEEEECCCCeE--E
Q 001349 950 CGCQDGAIQEIDLATGTFATIQTGH-------RKLLGKANPVHALQVHNG---LVYTASTSLDGAAVKMWSTSNYNM--V 1017 (1094)
Q Consensus 950 sgs~Dg~I~iwDl~~~~~~~~~~~~-------~~~~~h~~~V~sl~fs~~---~~~las~s~Dg~~I~iwd~~~~~~--~ 1017 (1094)
+|+.||.|++||+++++....+... ....+|...+.++.|+|+ +.++++++.++ .+.+|+...+.. +
T Consensus 129 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~ 207 (351)
T 3f3f_A 129 CLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQ-AIIYQRGKDGKLHVA 207 (351)
T ss_dssp EEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTE-EEEEEECTTSCEEEE
T ss_pred EecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCC-cEEEEccCCCceeee
Confidence 9999999999999988754322110 112367889999999997 88999999886 888888877765 5
Q ss_pred EEec-CCCCEEEEEEeCC------EEEEEEcCCeEEEEECCCC-------------------------------------
Q 001349 1018 GSLP-TLSEVRAMVVSSE------LVYLGCKGGTVEIWDQKRQ------------------------------------- 1053 (1094)
Q Consensus 1018 ~~~~-~~~~v~~l~~spd------~l~sgs~dg~I~vwd~~t~------------------------------------- 1053 (1094)
..+. |...|.+++|+|+ ++++|+.||.|++||+.++
T Consensus 208 ~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (351)
T 3f3f_A 208 AKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEK 287 (351)
T ss_dssp EECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------------------------------------
T ss_pred eecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccccccccccccee
Confidence 5555 7789999999998 5999999999999998865
Q ss_pred ---------cEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1054 ---------IRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1054 ---------~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
+.+..+ .+|.+.|++++|+|++++|++|+.||.|++||++
T Consensus 288 ~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 336 (351)
T 3f3f_A 288 AELQSNLQVELLSEH-DDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKAT 336 (351)
T ss_dssp ---CCSEEEEEEEEE-CTTSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred eeecccccccEEEEE-ecccccEEEEEEcCCCCEEEEecCCCcEEEEecC
Confidence 566666 5899999999999999999999999999999974
No 69
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.96 E-value=2.7e-27 Score=280.57 Aligned_cols=263 Identities=23% Similarity=0.402 Sum_probs=230.0
Q ss_pred eecccCCCc-EEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 001349 807 HVDSSENGK-VLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIG 885 (1094)
Q Consensus 807 ~~~~~h~~~-V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~ 885 (1094)
..+.+|.+. ++++.++++++++|+.||+|++||+.++ +.+..+.+|.+.|+++.|+ ++++++|+.||+|++||+.
T Consensus 112 ~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~--~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~ 187 (445)
T 2ovr_B 112 KVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTG--KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAE 187 (445)
T ss_dssp EEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTC--CEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred EEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCC--cEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECC
Confidence 456788876 5889999899999999999999999998 7889999999999999997 6799999999999999999
Q ss_pred CCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC------------CCCceEEEEeCCEEEEEEc
Q 001349 886 NEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS------------SKYPKCLALVQGKVYCGCQ 953 (1094)
Q Consensus 886 ~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~------------~~~v~~l~~s~~~l~sgs~ 953 (1094)
+++. ......+...|.++. | ++..+++++.+|.+++|+. ...+.++.+.++.+++|+.
T Consensus 188 ~~~~-~~~~~~h~~~v~~~~-------~--~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 257 (445)
T 2ovr_B 188 TGEC-IHTLYGHTSTVRCMH-------L--HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAY 257 (445)
T ss_dssp TTEE-EEEECCCSSCEEEEE-------E--ETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEET
T ss_pred cCcE-EEEECCCCCcEEEEE-------e--cCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEcC
Confidence 9853 223345677787766 4 4678999999999999984 4568899998888999999
Q ss_pred CCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEe
Q 001349 954 DGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVS 1032 (1094)
Q Consensus 954 Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s 1032 (1094)
||.|++||+++++.. ..+.+|...|.++.| ++.++++++.|| .|++||+++++.+..+. |...+.++.++
T Consensus 258 dg~i~iwd~~~~~~~------~~~~~~~~~v~~~~~--~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~v~~~~~~ 328 (445)
T 2ovr_B 258 DFMVKVWDPETETCL------HTLQGHTNRVYSLQF--DGIHVVSGSLDT-SIRVWDVETGNCIHTLTGHQSLTSGMELK 328 (445)
T ss_dssp TSCEEEEEGGGTEEE------EEECCCSSCEEEEEE--CSSEEEEEETTS-CEEEEETTTCCEEEEECCCCSCEEEEEEE
T ss_pred CCEEEEEECCCCcEe------EEecCCCCceEEEEE--CCCEEEEEeCCC-eEEEEECCCCCEEEEEcCCcccEEEEEEe
Confidence 999999999998877 556688999999999 677889999987 99999999999999887 67889999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCcEEEEecc--cCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1033 SELVYLGCKGGTVEIWDQKRQIRIETLQT--GTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1033 pd~l~sgs~dg~I~vwd~~t~~~~~~l~~--~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
++++++|+.||.|++||+.+++.+..+.. .|...|++++|+ +++|++|+.||+|++||+.
T Consensus 329 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 329 DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETT
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECC
Confidence 99999999999999999999999999852 388899999995 6899999999999999973
No 70
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.5e-28 Score=279.46 Aligned_cols=249 Identities=16% Similarity=0.218 Sum_probs=206.0
Q ss_pred ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecC--CCEEEEEeCCCcEE
Q 001349 805 LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS--GEMLYSGSLDKTAR 880 (1094)
Q Consensus 805 ~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspd--g~~LaSgs~DgtI~ 880 (1094)
...++.+|.+.|++++|+|+ +|++|+.||+|+|||+.++....+..+.+|.+.|++++|+++ +++|++|+.||+|+
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 34567899999999999996 999999999999999985544788899999999999999987 99999999999999
Q ss_pred EEECCCCceEEEE-ecccCccceeeeecCceEEEeeC--CCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeE
Q 001349 881 VWSIGNEEIHCVQ-VHDIKDQIQNLAVSNSILCFIPQ--GAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAI 957 (1094)
Q Consensus 881 vWdi~~~~~~~~~-~~~~~~~V~~v~~~~~~~~fspd--g~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I 957 (1094)
+||+.+++..... ...+...|.++. |+|+ +. .+++++.||.|
T Consensus 83 iwd~~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~~~----------------------------~l~~~~~d~~i 127 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAVHSASVNSVQ-------WAPHEYGP----------------------------LLLVASSDGKV 127 (379)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEE-------ECCGGGCS----------------------------EEEEEETTSEE
T ss_pred EEEcCCCceeEeeeecCCCcceEEEE-------eCCCCCCC----------------------------EEEEecCCCcE
Confidence 9999998633333 234566777776 6666 44 48899999999
Q ss_pred EEEECCCCceeEEeccceeecCCCCCeEEEEEeC-------------CccEEEEEECCCCEEEEEECCCCe----EEEEe
Q 001349 958 QEIDLATGTFATIQTGHRKLLGKANPVHALQVHN-------------GLVYTASTSLDGAAVKMWSTSNYN----MVGSL 1020 (1094)
Q Consensus 958 ~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~-------------~~~~las~s~Dg~~I~iwd~~~~~----~~~~~ 1020 (1094)
++||+.++..... ..+.+|...|.+++|+| ++.++++++.|| .|++||++++. ....+
T Consensus 128 ~v~d~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~ 202 (379)
T 3jrp_A 128 SVVEFKENGTTSP----IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN-LVKIWKYNSDAQTYVLESTL 202 (379)
T ss_dssp EEEECCTTSCCCE----EEEECCTTCEEEEEECCCC----------CTTCEEEEEETTS-CEEEEEEETTTTEEEEEEEE
T ss_pred EEEecCCCCceee----EEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCC-eEEEEEecCCCcceeeEEEE
Confidence 9999998754322 34567899999999999 689999999997 99999998754 34455
Q ss_pred c-CCCCEEEEEEeCC-----EEEEEEcCCeEEEEECCCCc---EEEEe-cccCCcceEEEEEcCCCCEEEEEeCCCcEEE
Q 001349 1021 P-TLSEVRAMVVSSE-----LVYLGCKGGTVEIWDQKRQI---RIETL-QTGTSGKVQCMALDDNEEFLVIGTSDGRIQA 1090 (1094)
Q Consensus 1021 ~-~~~~v~~l~~spd-----~l~sgs~dg~I~vwd~~t~~---~~~~l-~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~i 1090 (1094)
. |...|.+++|+|+ ++++++.||.|++||+.++. ....+ ...|...|++++|+|+|++|++++.||.|++
T Consensus 203 ~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~i 282 (379)
T 3jrp_A 203 EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTL 282 (379)
T ss_dssp CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEE
T ss_pred ecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEE
Confidence 5 6788999999986 79999999999999998864 22222 1247889999999999999999999999999
Q ss_pred EeC
Q 001349 1091 WGL 1093 (1094)
Q Consensus 1091 Wdl 1093 (1094)
|++
T Consensus 283 w~~ 285 (379)
T 3jrp_A 283 WKE 285 (379)
T ss_dssp EEE
T ss_pred EeC
Confidence 986
No 71
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.96 E-value=1.1e-27 Score=271.94 Aligned_cols=263 Identities=12% Similarity=0.144 Sum_probs=226.2
Q ss_pred eecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCc-ceeEEEecccCCCeEEEEEecCCC-EEEEEeCCCcEEEE
Q 001349 807 HVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI-LHLIQQIREHTKAVTGLAILQSGE-MLYSGSLDKTARVW 882 (1094)
Q Consensus 807 ~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~-~~~~~~l~~H~~~V~sv~fspdg~-~LaSgs~DgtI~vW 882 (1094)
....+|.+.|++++|+|+ +|++|+.||+|++||+.++. ......+.+|...|++++|+|+++ +|++|+.||+|++|
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV 84 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEE
Confidence 345689999999999986 99999999999999998873 113455668999999999999999 99999999999999
Q ss_pred EC-CCCceEEEEecc--cCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC--------------------CCCce
Q 001349 883 SI-GNEEIHCVQVHD--IKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS--------------------SKYPK 939 (1094)
Q Consensus 883 di-~~~~~~~~~~~~--~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~--------------------~~~v~ 939 (1094)
|+ .+++. ..... +...|.++. |+| +..+++++.++.+++|+. ...+.
T Consensus 85 d~~~~~~~--~~~~~~~~~~~v~~l~-------~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 154 (342)
T 1yfq_A 85 DLIGSPSF--QALTNNEANLGICRIC-------KYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIF 154 (342)
T ss_dssp CSSSSSSE--EECBSCCCCSCEEEEE-------EET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEE
T ss_pred EeccCCce--EeccccCCCCceEEEE-------eCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceE
Confidence 99 88754 33344 788888888 899 999999999999999973 23589
Q ss_pred EEEEeCCEEEEEEcCCeEEEEECCC-CceeEEeccceeecCCCCCeEEEEEeC-CccEEEEEECCCCEEEEEECCCC---
Q 001349 940 CLALVQGKVYCGCQDGAIQEIDLAT-GTFATIQTGHRKLLGKANPVHALQVHN-GLVYTASTSLDGAAVKMWSTSNY--- 1014 (1094)
Q Consensus 940 ~l~~s~~~l~sgs~Dg~I~iwDl~~-~~~~~~~~~~~~~~~h~~~V~sl~fs~-~~~~las~s~Dg~~I~iwd~~~~--- 1014 (1094)
++.++++.+++++.||.|++||+++ +..... .....|...|.+++|+| ++.++++++.|| .|++||+...
T Consensus 155 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~----~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg-~i~i~~~~~~~~~ 229 (342)
T 1yfq_A 155 TMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGT----IEESGLKYQIRDVALLPKEQEGYACSSIDG-RVAVEFFDDQGDD 229 (342)
T ss_dssp EEEECSSEEEEEESTTEEEEEESSCCTTCCCE----EEECSCSSCEEEEEECSGGGCEEEEEETTS-EEEEEECCTTCCS
T ss_pred EEEecCCcEEEEeCCCeEEEEECCccccccce----eeecCCCCceeEEEECCCCCCEEEEEecCC-cEEEEEEcCCCcc
Confidence 9999998899999999999999998 553211 23456778999999999 999999999987 9999999876
Q ss_pred ---eEEEEec-CCC---------CEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccC-CcceEEEEEcCCCCE
Q 001349 1015 ---NMVGSLP-TLS---------EVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGT-SGKVQCMALDDNEEF 1078 (1094)
Q Consensus 1015 ---~~~~~~~-~~~---------~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h-~~~I~~l~~Spdg~~ 1078 (1094)
+....+. |.. .|.+++|+|+ ++++|+.||.|++||+.+++.+..+. +| .+.|++++ |++++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~h~~~v~~~~--~~~~~ 306 (342)
T 1yfq_A 230 YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA-KFNEDSVVKIA--CSDNI 306 (342)
T ss_dssp TTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC-CCSSSEEEEEE--ECSSE
T ss_pred cccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhh-cccCCCceEec--CCCCe
Confidence 6666666 433 8999999997 79999999999999999999999985 66 99999999 99999
Q ss_pred EEEEeCCCc
Q 001349 1079 LVIGTSDGR 1087 (1094)
Q Consensus 1079 L~sgs~DG~ 1087 (1094)
|++|+.||+
T Consensus 307 l~s~s~Dg~ 315 (342)
T 1yfq_A 307 LCLATSDDT 315 (342)
T ss_dssp EEEEEECTH
T ss_pred EEEEecCCc
Confidence 999999998
No 72
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.96 E-value=2.4e-28 Score=288.58 Aligned_cols=278 Identities=12% Similarity=0.193 Sum_probs=214.3
Q ss_pred hccccccccccCcEEEEeeCCCCeEEEeCCc-------------ceeecccCC------------CcEEEEEEeCC----
Q 001349 774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHRE-------------LVHVDSSEN------------GKVLSIACFRD---- 824 (1094)
Q Consensus 774 ~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~-------------~~~~~~~h~------------~~V~~l~fspd---- 824 (1094)
..+....+++++.+|++|+.||.|+||+... ....+.+|. +.|++++|+|+
T Consensus 29 ~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~ 108 (447)
T 3dw8_B 29 DIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAA 108 (447)
T ss_dssp GSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSS
T ss_pred CcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcc
Confidence 3455677888999999999999999999873 356778898 88999999985
Q ss_pred EEEEEECCCeEEEEecCCCcce-------------------------------------eEEE-ecccCCCeEEEEEecC
Q 001349 825 KIFSGHSDGTIKVWTGRGSILH-------------------------------------LIQQ-IREHTKAVTGLAILQS 866 (1094)
Q Consensus 825 ~LaSgs~Dg~I~vWd~~t~~~~-------------------------------------~~~~-l~~H~~~V~sv~fspd 866 (1094)
.|++|+.||+|++||+.++... +... ..+|...|++++|+|+
T Consensus 109 ~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 188 (447)
T 3dw8_B 109 QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSD 188 (447)
T ss_dssp EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTT
T ss_pred eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCC
Confidence 7999999999999999864210 1112 3689999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEE--------ecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCc
Q 001349 867 GEMLYSGSLDKTARVWSIGNEEIHCVQ--------VHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYP 938 (1094)
Q Consensus 867 g~~LaSgs~DgtI~vWdi~~~~~~~~~--------~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v 938 (1094)
+++|++| .||+|++||+.++. .... ...+...|.++. |+|+|.
T Consensus 189 ~~~l~s~-~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~-------~~p~~~-------------------- 239 (447)
T 3dw8_B 189 YETYLSA-DDLRINLWHLEITD-RSFNIVDIKPANMEELTEVITAAE-------FHPNSC-------------------- 239 (447)
T ss_dssp SSEEEEE-CSSEEEEEETTEEE-EEEEEEECCCSSGGGCCCCEEEEE-------ECSSCT--------------------
T ss_pred CCEEEEe-CCCeEEEEECCCCC-ceeeeeecccccccccCcceEEEE-------ECCCCC--------------------
Confidence 9999998 79999999998532 2222 223445555555 566551
Q ss_pred eEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCC------------CeEEEEEeCCccEEEEEECCCCEE
Q 001349 939 KCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKAN------------PVHALQVHNGLVYTASTSLDGAAV 1006 (1094)
Q Consensus 939 ~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~------------~V~sl~fs~~~~~las~s~Dg~~I 1006 (1094)
..+++|+.||.|++||++++..... ....+.+|.. .|.+++|+|++.++++++. + .|
T Consensus 240 -------~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~-~v 308 (447)
T 3dw8_B 240 -------NTFVYSSSKGTIRLCDMRASALCDR--HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-L-SV 308 (447)
T ss_dssp -------TEEEEEETTSCEEEEETTTCSSSCT--TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-S-EE
T ss_pred -------cEEEEEeCCCeEEEEECcCCccccc--eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-C-eE
Confidence 1489999999999999999875100 0033445544 8999999999999999887 5 99
Q ss_pred EEEECCC-CeEEEEecCCCC----------------EEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEec-------
Q 001349 1007 KMWSTSN-YNMVGSLPTLSE----------------VRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQ------- 1060 (1094)
Q Consensus 1007 ~iwd~~~-~~~~~~~~~~~~----------------v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~------- 1060 (1094)
++||+++ ++++..+..+.. +..++|+|+ ++++|+.||.|++||+.+++.+....
T Consensus 309 ~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~ 388 (447)
T 3dw8_B 309 KVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKP 388 (447)
T ss_dssp EEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCT
T ss_pred EEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeeccccccc
Confidence 9999997 888877774433 334899998 89999999999999999988764221
Q ss_pred ------------------------ccCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1061 ------------------------TGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1061 ------------------------~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
..+...|..++|+|++++|++++.++ +++|.
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~ 443 (447)
T 3dw8_B 389 RTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQ 443 (447)
T ss_dssp TCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEE
T ss_pred ccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeec
Confidence 02345789999999999999998876 77775
No 73
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.9e-28 Score=289.33 Aligned_cols=277 Identities=14% Similarity=0.181 Sum_probs=217.3
Q ss_pred ccccccccCcEEEEeeCCCCeEEEeCC-cceeec-ccCCCcEEEEEEeC-C--EEEEEECCCeEEEEecCC---Cc-cee
Q 001349 777 KYSPLAFEMVKVLSNGHDSSADFWNHR-ELVHVD-SSENGKVLSIACFR-D--KIFSGHSDGTIKVWTGRG---SI-LHL 847 (1094)
Q Consensus 777 ~~~~~~~d~~~l~s~s~dg~I~vWd~~-~~~~~~-~~h~~~V~~l~fsp-d--~LaSgs~Dg~I~vWd~~t---~~-~~~ 847 (1094)
.+..+.+++..+++++ .|+.. ..+..+ .+|.+.|++++|+| + +|++|+.||+|+|||+.+ +. ...
T Consensus 31 ~~~~f~~~~~~~~~~~------~w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 104 (437)
T 3gre_A 31 DYKEFGPIQEIVRSPN------MGNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSS 104 (437)
T ss_dssp GCGGGCCCCCCCCCCC------GGGCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSC
T ss_pred chhhcCCccccccccc------cccccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccce
Confidence 3455677777777655 38766 445556 88999999999999 6 999999999999999876 42 122
Q ss_pred EEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECC---CCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEE
Q 001349 848 IQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIG---NEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHL 924 (1094)
Q Consensus 848 ~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~---~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~ 924 (1094)
...+ +|.+.|++++|+|++++|++|+.||+|++||+. +++....... ..+..+. |+|++
T Consensus 105 ~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~---~~i~~~~-------~~~~~------- 166 (437)
T 3gre_A 105 SLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNC---ECIRKIN-------LKNFG------- 166 (437)
T ss_dssp SEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEE---EEEEEEE-------GGGGS-------
T ss_pred eeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeecccc---ceeEEEE-------ccCcc-------
Confidence 3343 599999999999999999999999999999995 4432111111 1344443 33321
Q ss_pred eCCeEEEEcCCCCceEEEEe----CCEEEEEEcCCeEEEEECCCCceeEEeccceeecC--CCCCeEEEEEeCCccEEEE
Q 001349 925 RNGKTKLLNSSKYPKCLALV----QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLG--KANPVHALQVHNGLVYTAS 998 (1094)
Q Consensus 925 ~~g~i~l~~~~~~v~~l~~s----~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~--h~~~V~sl~fs~~~~~las 998 (1094)
+...+.++.+. +..+++|+.||.|++||+++++... .+.+ |...|++++|+|++.++++
T Consensus 167 ---------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~------~~~~~~h~~~v~~~~~s~~~~~l~s 231 (437)
T 3gre_A 167 ---------KNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQ------IIENSPRHGAVSSICIDEECCVLIL 231 (437)
T ss_dssp ---------SCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEE------EEECCGGGCCEEEEEECTTSCEEEE
T ss_pred ---------cccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeE------EEccCCCCCceEEEEECCCCCEEEE
Confidence 12334444432 3469999999999999999998874 4444 7889999999999999999
Q ss_pred EECCCCEEEEEECCCCeEEEEec--CCCCEEEEEEeCC------EEEEEEcCCeEEEEECCCCcEEEEeccc--------
Q 001349 999 TSLDGAAVKMWSTSNYNMVGSLP--TLSEVRAMVVSSE------LVYLGCKGGTVEIWDQKRQIRIETLQTG-------- 1062 (1094)
Q Consensus 999 ~s~Dg~~I~iwd~~~~~~~~~~~--~~~~v~~l~~spd------~l~sgs~dg~I~vwd~~t~~~~~~l~~~-------- 1062 (1094)
++.|| .|++||+++++++..+. |...|.+++|+|. ++++|+.||.|++||+.+++.+..+...
T Consensus 232 ~~~dg-~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 310 (437)
T 3gre_A 232 GTTRG-IIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEH 310 (437)
T ss_dssp EETTS-CEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGG
T ss_pred EcCCC-eEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccce
Confidence 99997 99999999999999874 6778999977764 7999999999999999999988887411
Q ss_pred -----------------CCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1063 -----------------TSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1063 -----------------h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
|...|++++|+ ++++|++|+.||+|++||+.
T Consensus 311 ~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~ 358 (437)
T 3gre_A 311 FLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLN 358 (437)
T ss_dssp GSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETT
T ss_pred ecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECC
Confidence 56679999999 78999999999999999973
No 74
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.96 E-value=2.1e-27 Score=276.99 Aligned_cols=236 Identities=22% Similarity=0.401 Sum_probs=196.4
Q ss_pred cCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCC------------------CeEEEEEecCCCEE
Q 001349 811 SENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTK------------------AVTGLAILQSGEML 870 (1094)
Q Consensus 811 ~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~------------------~V~sv~fspdg~~L 870 (1094)
+|.+.|.+++|+|+ +|++|+ |+++++|++.++ ..+..+..|.. .|++++|+|+|++|
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l 138 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDG--SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 138 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTC--CEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCC--CEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEE
Confidence 69999999999997 888876 789999999998 56666665532 49999999999999
Q ss_pred EEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEE
Q 001349 871 YSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYC 950 (1094)
Q Consensus 871 aSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~s 950 (1094)
++|+.||+|++||+.+++. ......|...|.++. |+|+|. .+++
T Consensus 139 ~s~~~d~~i~iwd~~~~~~-~~~~~~h~~~v~~~~-------~~p~~~----------------------------~l~s 182 (393)
T 1erj_A 139 ATGAEDRLIRIWDIENRKI-VMILQGHEQDIYSLD-------YFPSGD----------------------------KLVS 182 (393)
T ss_dssp EEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEE-------ECTTSS----------------------------EEEE
T ss_pred EEEcCCCeEEEEECCCCcE-EEEEccCCCCEEEEE-------EcCCCC----------------------------EEEE
Confidence 9999999999999998752 223345667777776 777776 4889
Q ss_pred EEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeC-CccEEEEEECCCCEEEEEECCCCeEEEEe--------c
Q 001349 951 GCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN-GLVYTASTSLDGAAVKMWSTSNYNMVGSL--------P 1021 (1094)
Q Consensus 951 gs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~-~~~~las~s~Dg~~I~iwd~~~~~~~~~~--------~ 1021 (1094)
|+.|++|++||+++++....+ .+...+.+++|+| ++.++++++.|+ .|++||++++..+..+ .
T Consensus 183 ~s~d~~v~iwd~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~s~d~-~v~iwd~~~~~~~~~~~~~~~~~~~ 254 (393)
T 1erj_A 183 GSGDRTVRIWDLRTGQCSLTL-------SIEDGVTTVAVSPGDGKYIAAGSLDR-AVRVWDSETGFLVERLDSENESGTG 254 (393)
T ss_dssp EETTSEEEEEETTTTEEEEEE-------ECSSCEEEEEECSTTCCEEEEEETTS-CEEEEETTTCCEEEEEC------CC
T ss_pred ecCCCcEEEEECCCCeeEEEE-------EcCCCcEEEEEECCCCCEEEEEcCCC-cEEEEECCCCcEEEeecccccCCCC
Confidence 999999999999998876432 2456799999998 899999999997 9999999999887776 2
Q ss_pred CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCC------------cEEEEecccCCcceEEEEEcCCCCEEEEEeCCCc
Q 001349 1022 TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQ------------IRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGR 1087 (1094)
Q Consensus 1022 ~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~------------~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~ 1087 (1094)
|...|.+++|+|+ ++++|+.||+|++||+.+. .+...+ .+|...|.+++|+|++.+|++|+.||+
T Consensus 255 h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~sgs~D~~ 333 (393)
T 1erj_A 255 HKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY-IGHKDFVLSVATTQNDEYILSGSKDRG 333 (393)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEE-ECCSSCEEEEEECGGGCEEEEEETTSE
T ss_pred CCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEE-ecccCcEEEEEECCCCCEEEEEeCCCe
Confidence 6678999999998 8999999999999998753 344556 589999999999999999999999999
Q ss_pred EEEEeCC
Q 001349 1088 IQAWGLS 1094 (1094)
Q Consensus 1088 I~iWdls 1094 (1094)
|++||+.
T Consensus 334 v~iwd~~ 340 (393)
T 1erj_A 334 VLFWDKK 340 (393)
T ss_dssp EEEEETT
T ss_pred EEEEECC
Confidence 9999963
No 75
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.3e-28 Score=287.71 Aligned_cols=272 Identities=11% Similarity=0.150 Sum_probs=228.6
Q ss_pred CcEEEEEEeCC---EEEEE----------ECCCeEEEEecCCCcce-eEEEecccCCCeEEEEEecCCCEEEEEeCCCcE
Q 001349 814 GKVLSIACFRD---KIFSG----------HSDGTIKVWTGRGSILH-LIQQIREHTKAVTGLAILQSGEMLYSGSLDKTA 879 (1094)
Q Consensus 814 ~~V~~l~fspd---~LaSg----------s~Dg~I~vWd~~t~~~~-~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI 879 (1094)
..|.+++|+|+ ++++| +.||+|++||+.++... .+..+ .|...|++++|+|++++|++|+.||+|
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v 91 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSL 91 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeE
Confidence 45788999986 89999 89999999999987322 33333 589999999999999999999999999
Q ss_pred EEEECCC---CceEEEEecccCccceeeeecCceEEEeeC-CCeEEEEEeCCeEEEEcCC--------------------
Q 001349 880 RVWSIGN---EEIHCVQVHDIKDQIQNLAVSNSILCFIPQ-GAGIKVHLRNGKTKLLNSS-------------------- 935 (1094)
Q Consensus 880 ~vWdi~~---~~~~~~~~~~~~~~V~~v~~~~~~~~fspd-g~~l~~~~~~g~i~l~~~~-------------------- 935 (1094)
++||+.+ +.........+...|.++. |+|+ +..+++++.++.+++|+..
T Consensus 92 ~vw~~~~~~~~~~~~~~~~~h~~~v~~~~-------~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 164 (416)
T 2pm9_A 92 ELYSTNEANNAINSMARFSNHSSSVKTVK-------FNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSS 164 (416)
T ss_dssp EEECCSSTTSCCCEEEECCCSSSCCCEEE-------ECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCS
T ss_pred EEeecccccccccchhhccCCccceEEEE-------EcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCC
Confidence 9999987 2223444456788899888 9998 8899999999999999742
Q ss_pred -CCceEEEEeCC---EEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCc-cEEEEEECCC--CEEEE
Q 001349 936 -KYPKCLALVQG---KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGL-VYTASTSLDG--AAVKM 1008 (1094)
Q Consensus 936 -~~v~~l~~s~~---~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~-~~las~s~Dg--~~I~i 1008 (1094)
..+.++.|+++ .+++++.||.|++||+++++....+.......+|...|.+++|+|++ .++++++.|+ +.|++
T Consensus 165 ~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~ 244 (416)
T 2pm9_A 165 VDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILI 244 (416)
T ss_dssp SCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCE
T ss_pred CCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEE
Confidence 34778999853 69999999999999999998876554443344558899999999986 6788887763 18999
Q ss_pred EECCCC-eEEEEec--CCCCEEEEEEeC-C--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCC-CEEEE
Q 001349 1009 WSTSNY-NMVGSLP--TLSEVRAMVVSS-E--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNE-EFLVI 1081 (1094)
Q Consensus 1009 wd~~~~-~~~~~~~--~~~~v~~l~~sp-d--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg-~~L~s 1081 (1094)
||++++ .+...+. |...|.+++|+| + ++++++.||.|++||+.+++.+..+ .+|.+.|++++|+|++ .+|++
T Consensus 245 ~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~l~s 323 (416)
T 2pm9_A 245 WDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQF-PARGNWCFKTKFAPEAPDLFAC 323 (416)
T ss_dssp EETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEE-ECSSSCCCCEEECTTCTTEEEE
T ss_pred EeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceee-cCCCCceEEEEECCCCCCEEEE
Confidence 999986 5666665 778999999998 5 8999999999999999999999999 5899999999999999 89999
Q ss_pred EeCCCcEEEEeCC
Q 001349 1082 GTSDGRIQAWGLS 1094 (1094)
Q Consensus 1082 gs~DG~I~iWdls 1094 (1094)
++.||+|++||+.
T Consensus 324 ~~~d~~i~iw~~~ 336 (416)
T 2pm9_A 324 ASFDNKIEVQTLQ 336 (416)
T ss_dssp CCSSSEEEEEESC
T ss_pred EecCCcEEEEEcc
Confidence 9999999999974
No 76
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.96 E-value=6e-28 Score=282.11 Aligned_cols=263 Identities=18% Similarity=0.198 Sum_probs=212.8
Q ss_pred EEEEeeCCCCeEEEeCCc------ceeecccCCCcEEEEEEeC-C--EEEEEECCCeEEEEecCCCcc-----eeEEEec
Q 001349 787 KVLSNGHDSSADFWNHRE------LVHVDSSENGKVLSIACFR-D--KIFSGHSDGTIKVWTGRGSIL-----HLIQQIR 852 (1094)
Q Consensus 787 ~l~s~s~dg~I~vWd~~~------~~~~~~~h~~~V~~l~fsp-d--~LaSgs~Dg~I~vWd~~t~~~-----~~~~~l~ 852 (1094)
.+++++.||.|+||++.. ....+.+|.+.|++++|+| + +|++|+.||+|++||+.++.. ..+..+.
T Consensus 49 ~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~ 128 (402)
T 2aq5_A 49 LICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE 128 (402)
T ss_dssp EEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEE
T ss_pred EEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEec
Confidence 344578999999999862 3445778999999999998 5 999999999999999988733 4577888
Q ss_pred ccCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCceEEEEe-cccCccceeeeecCceEEEeeCCCeEEEEEeCCeEE
Q 001349 853 EHTKAVTGLAILQSG-EMLYSGSLDKTARVWSIGNEEIHCVQV-HDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTK 930 (1094)
Q Consensus 853 ~H~~~V~sv~fspdg-~~LaSgs~DgtI~vWdi~~~~~~~~~~-~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~ 930 (1094)
+|...|++++|+|++ ++|++|+.||+|++||+.+++...... ..+...|.++. |+|+|+.
T Consensus 129 ~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~~----------- 190 (402)
T 2aq5_A 129 GHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVD-------WSRDGAL----------- 190 (402)
T ss_dssp CCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEE-------ECTTSSC-----------
T ss_pred CCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEE-------ECCCCCE-----------
Confidence 999999999999998 699999999999999999985332221 45677777777 7777764
Q ss_pred EEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceee-cCCCCC-eEEEEEeCCccEEEEE---ECCCCE
Q 001349 931 LLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKL-LGKANP-VHALQVHNGLVYTAST---SLDGAA 1005 (1094)
Q Consensus 931 l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~-~~h~~~-V~sl~fs~~~~~las~---s~Dg~~ 1005 (1094)
+++|+.||.|++||+++++... .+ .+|... +.++.|++++.+++++ +.|+ .
T Consensus 191 -----------------l~~~~~d~~i~iwd~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~-~ 246 (402)
T 2aq5_A 191 -----------------ICTSCRDKRVRVIEPRKGTVVA------EKDRPHEGTRPVHAVFVSEGKILTTGFSRMSER-Q 246 (402)
T ss_dssp -----------------EEEEETTSEEEEEETTTTEEEE------EEECSSCSSSCCEEEECSTTEEEEEEECTTCCE-E
T ss_pred -----------------EEEEecCCcEEEEeCCCCceee------eeccCCCCCcceEEEEcCCCcEEEEeccCCCCc-e
Confidence 8889999999999999988773 34 466655 8999999999999998 5665 9
Q ss_pred EEEEECCCCeE---EEEecCCCCEEEEEEeCC--EEE-EEEcCCeEEEEECCCCcE-EEEec-ccCCcceEEEEEcCCCC
Q 001349 1006 VKMWSTSNYNM---VGSLPTLSEVRAMVVSSE--LVY-LGCKGGTVEIWDQKRQIR-IETLQ-TGTSGKVQCMALDDNEE 1077 (1094)
Q Consensus 1006 I~iwd~~~~~~---~~~~~~~~~v~~l~~spd--~l~-sgs~dg~I~vwd~~t~~~-~~~l~-~~h~~~I~~l~~Spdg~ 1077 (1094)
|++||++++.. ...+.+...+.+++|+|+ +++ +|+.||.|++||+.+++. +..+. ..|.+.|.+++|+|++.
T Consensus 247 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~ 326 (402)
T 2aq5_A 247 VALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRG 326 (402)
T ss_dssp EEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGG
T ss_pred EEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccc
Confidence 99999998654 334457788999999998 565 566899999999999873 33332 12568999999999998
Q ss_pred EEEEEeCCCcEEEEeC
Q 001349 1078 FLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1078 ~L~sgs~DG~I~iWdl 1093 (1094)
++++ .++.+++|++
T Consensus 327 ~~~s--~~~~~~~~~l 340 (402)
T 2aq5_A 327 LEVN--KCEIARFYKL 340 (402)
T ss_dssp SCGG--GTEEEEEEEE
T ss_pred ccee--cceeEEEEEc
Confidence 8764 5779999986
No 77
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.96 E-value=1e-27 Score=268.37 Aligned_cols=255 Identities=15% Similarity=0.195 Sum_probs=199.1
Q ss_pred hhhccccccccccCcEEEEeeCCCCeEEEeCC----cceeecccCCCcEEEEEEeC----CEEEEEECCCeEEEEecCCC
Q 001349 772 LRELRKYSPLAFEMVKVLSNGHDSSADFWNHR----ELVHVDSSENGKVLSIACFR----DKIFSGHSDGTIKVWTGRGS 843 (1094)
Q Consensus 772 ~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~----~~~~~~~~h~~~V~~l~fsp----d~LaSgs~Dg~I~vWd~~t~ 843 (1094)
|...+....|++++.+|++|+.|++|++||.. .....+.+|.+.|++++|++ ++|+||+.||+|++||+.++
T Consensus 8 h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~ 87 (297)
T 2pm7_B 8 HNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENG 87 (297)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSS
T ss_pred CcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCC
Confidence 44455567788899999999999999999985 35678889999999999975 39999999999999999987
Q ss_pred cceeEEEecccCCCeEEEEEecC--CCEEEEEeCCCcEEEEECCCCc-eEEEEecccCccceeeeecCceEEEeeCCCeE
Q 001349 844 ILHLIQQIREHTKAVTGLAILQS--GEMLYSGSLDKTARVWSIGNEE-IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGI 920 (1094)
Q Consensus 844 ~~~~~~~l~~H~~~V~sv~fspd--g~~LaSgs~DgtI~vWdi~~~~-~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l 920 (1094)
....+..+.+|...|.+++|+|+ |.+|++|+.||+|++||++++. ........+...|.++. |+|++..-
T Consensus 88 ~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~-------~~p~~~~~ 160 (297)
T 2pm7_B 88 RWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS-------WAPATIEE 160 (297)
T ss_dssp CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEE-------ECCCC---
T ss_pred ceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEe-------ecCCcccc
Confidence 55567788899999999999997 8999999999999999998763 22233345667788877 66654210
Q ss_pred EEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCc---cEEE
Q 001349 921 KVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGL---VYTA 997 (1094)
Q Consensus 921 ~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~---~~la 997 (1094)
.+. .........+++|+.|++|++||++++....... ..+.+|...|.+++|+|++ .+++
T Consensus 161 -----~~~----------~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~--~~l~~H~~~V~~v~~sp~~~~~~~la 223 (297)
T 2pm7_B 161 -----DGE----------HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE--STLEGHSDWVRDVAWSPTVLLRSYMA 223 (297)
T ss_dssp ------------------------CCEEEEEETTSCEEEEEEETTTTEEEEE--EEECCCSSCEEEEEECCCCSSSEEEE
T ss_pred -----ccc----------CCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEE--EEecCCCCceEEEEECCCCCCceEEE
Confidence 000 0000012469999999999999998776321111 4678899999999999984 8999
Q ss_pred EEECCCCEEEEEECCCCe---EEEEe---cCCCCEEEEEEeCC--EEEEEEcCCeEEEEECC
Q 001349 998 STSLDGAAVKMWSTSNYN---MVGSL---PTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQK 1051 (1094)
Q Consensus 998 s~s~Dg~~I~iwd~~~~~---~~~~~---~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~ 1051 (1094)
+++.|+ +|++||+.+.. ....+ .+...|.+++|+|+ +|++++.||+|++|+..
T Consensus 224 s~s~D~-~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 224 SVSQDR-TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEETTS-CEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EEECCC-cEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 999996 99999997642 22233 25678999999998 89999999999999976
No 78
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.96 E-value=1.5e-27 Score=273.97 Aligned_cols=246 Identities=15% Similarity=0.160 Sum_probs=210.5
Q ss_pred ecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 001349 808 VDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIG 885 (1094)
Q Consensus 808 ~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~ 885 (1094)
.+..|.++|++++|+|+ +|++|+.||.|++||+.++....+..+.+|...|++++|+|++++|++++.||+|++||+.
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence 34568999999999997 9999999999999999998444889999999999999999999999999999999999998
Q ss_pred CCceE-EEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCC
Q 001349 886 NEEIH-CVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLAT 964 (1094)
Q Consensus 886 ~~~~~-~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~ 964 (1094)
+++.. ......+...|.++. |+|+++ .+++|+.||.|++||+..
T Consensus 83 ~~~~~~~~~~~~~~~~v~~~~-------~~~~~~----------------------------~l~~~~~d~~v~i~d~~~ 127 (372)
T 1k8k_C 83 GRTWKPTLVILRINRAARCVR-------WAPNEK----------------------------KFAVGSGSRVISICYFEQ 127 (372)
T ss_dssp TTEEEEEEECCCCSSCEEEEE-------ECTTSS----------------------------EEEEEETTSSEEEEEEET
T ss_pred CCeeeeeEEeecCCCceeEEE-------ECCCCC----------------------------EEEEEeCCCEEEEEEecC
Confidence 87533 233345666777776 777766 388899999999999998
Q ss_pred CceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEEC------------------CCCeEEEEec-CCCC
Q 001349 965 GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWST------------------SNYNMVGSLP-TLSE 1025 (1094)
Q Consensus 965 ~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~------------------~~~~~~~~~~-~~~~ 1025 (1094)
+....... ....+|...|.+++|+|++.++++++.|| .|++||+ ..+..+..+. |...
T Consensus 128 ~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (372)
T 1k8k_C 128 ENDWWVCK--HIKKPIRSTVLSLDWHPNSVLLAAGSCDF-KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW 204 (372)
T ss_dssp TTTEEEEE--EECTTCCSCEEEEEECTTSSEEEEEETTS-CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSC
T ss_pred CCcceeee--eeecccCCCeeEEEEcCCCCEEEEEcCCC-CEEEEEcccccccccccccccccccchhhheEecCCCCCe
Confidence 77422111 23357889999999999999999999987 9999995 4677888886 7788
Q ss_pred EEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1026 VRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1026 v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
+.+++|+|+ ++++++.||.|++||+.+++.+..+ .+|...|++++|+|++.+|++| .||.|++|++
T Consensus 205 v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~ 272 (372)
T 1k8k_C 205 VHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL-ASETLPLLAVTFITESSLVAAG-HDCFPVLFTY 272 (372)
T ss_dssp EEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE-ECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEE-ccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEc
Confidence 999999998 8999999999999999999999999 4888899999999999988887 8999999986
No 79
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.96 E-value=1e-26 Score=262.69 Aligned_cols=260 Identities=14% Similarity=0.179 Sum_probs=224.1
Q ss_pred hccccccccccCcEEEEeeCCCCeEEEeCCc-----ceeecc--cCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCc
Q 001349 774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHRE-----LVHVDS--SENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI 844 (1094)
Q Consensus 774 ~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~-----~~~~~~--~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~ 844 (1094)
..+....+.+++.++++++ ||.|++|+... ...... +|...|.+++|+|+ +|++|+.||.|++||+.++.
T Consensus 52 ~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 130 (337)
T 1gxr_A 52 EVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT 130 (337)
T ss_dssp SCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-
T ss_pred CceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCC
Confidence 3445667788999999999 99999999872 122222 79999999999996 99999999999999999885
Q ss_pred ceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEE
Q 001349 845 LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHL 924 (1094)
Q Consensus 845 ~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~ 924 (1094)
......+.+|...|++++|+|+++++++++.||.|++||+.+++. ......+...+.++. |+|+++.+++++
T Consensus 131 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~-~~~~~~~~~~i~~~~-------~~~~~~~l~~~~ 202 (337)
T 1gxr_A 131 PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL-VRQFQGHTDGASCID-------ISNDGTKLWTGG 202 (337)
T ss_dssp -EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEE-------ECTTSSEEEEEE
T ss_pred cceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCce-eeeeecccCceEEEE-------ECCCCCEEEEEe
Confidence 457788889999999999999999999999999999999998752 223334677888887 999999999999
Q ss_pred eCCeEEEEcC-----------CCCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeC
Q 001349 925 RNGKTKLLNS-----------SKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN 991 (1094)
Q Consensus 925 ~~g~i~l~~~-----------~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~ 991 (1094)
.+|.+++|+. ...+.++.+++ ..+++++.||.|++||+.++... .+..|...|.++.|+|
T Consensus 203 ~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-------~~~~~~~~v~~~~~~~ 275 (337)
T 1gxr_A 203 LDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-------QLHLHESCVLSLKFAY 275 (337)
T ss_dssp TTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-------EECCCSSCEEEEEECT
T ss_pred cCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-------EEcCCccceeEEEECC
Confidence 9999999985 35688888875 46999999999999999988753 4567889999999999
Q ss_pred CccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEEC
Q 001349 992 GLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQ 1050 (1094)
Q Consensus 992 ~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~ 1050 (1094)
++.++++++.|| .|++||+.+++.+....+...+.+++|+|+ ++++++.||.|++||+
T Consensus 276 ~~~~l~~~~~dg-~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 276 CGKWFVSTGKDN-LLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp TSSEEEEEETTS-EEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCCEEEEecCCC-cEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 999999999987 999999999999888889999999999998 8999999999999996
No 80
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.96 E-value=6.4e-27 Score=265.15 Aligned_cols=267 Identities=19% Similarity=0.241 Sum_probs=222.0
Q ss_pred HHhhhcccccccccc-CcEEEEeeCCCCeEEEeCCc-------ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEe
Q 001349 770 KGLRELRKYSPLAFE-MVKVLSNGHDSSADFWNHRE-------LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWT 839 (1094)
Q Consensus 770 ~~~~~~~~~~~~~~d-~~~l~s~s~dg~I~vWd~~~-------~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd 839 (1094)
++|...+....+.++ +.+|+|||.|++|+|||+.. ....+.+|.+.|.+++|+|+ +|++|+.||.|++|+
T Consensus 35 ~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~ 114 (340)
T 4aow_A 35 KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWD 114 (340)
T ss_dssp CCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEe
Confidence 456666667778876 67999999999999999762 34667899999999999997 999999999999999
Q ss_pred cCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCC--
Q 001349 840 GRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQG-- 917 (1094)
Q Consensus 840 ~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg-- 917 (1094)
.... ........+...+..+.+++++.+|++|+.|+.+++||+............+...+..+. |++++
T Consensus 115 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~~ 185 (340)
T 4aow_A 115 LTTG--TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVR-------FSPNSSN 185 (340)
T ss_dssp TTTT--EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEE-------ECSCSSS
T ss_pred eccc--ceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceE-------EccCCCC
Confidence 9988 677777888999999999999999999999999999999887555555556677787777 66654
Q ss_pred CeEEEEEeCCeEEEEcC------------CCCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCC
Q 001349 918 AGIKVHLRNGKTKLLNS------------SKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANP 983 (1094)
Q Consensus 918 ~~l~~~~~~g~i~l~~~------------~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~ 983 (1094)
..+++++.++.+++|+. ...|.+++|++ ..+++|+.||.|++||++++..+..+ . +...
T Consensus 186 ~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~------~-~~~~ 258 (340)
T 4aow_A 186 PIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL------D-GGDI 258 (340)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE------E-CSSC
T ss_pred cEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeee------c-CCce
Confidence 45677888899999874 45789999986 46999999999999999998877433 2 3368
Q ss_pred eEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec----------CCCCEEEEEEeCC--EEEEEEcCCeEEEEECC
Q 001349 984 VHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP----------TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQK 1051 (1094)
Q Consensus 984 V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~----------~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~ 1051 (1094)
|.++.|+|++.+++++ .|+ .|++||++++..+..+. |...|++++|+|| +|++|+.||.|+|||+.
T Consensus 259 v~~~~~~~~~~~~~~~-~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 259 INALCFSPNRYWLCAA-TGP-SIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT 336 (340)
T ss_dssp EEEEEECSSSSEEEEE-ETT-EEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred EEeeecCCCCceeecc-CCC-EEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence 9999999998776655 465 99999999988776653 4678999999998 89999999999999999
Q ss_pred CCc
Q 001349 1052 RQI 1054 (1094)
Q Consensus 1052 t~~ 1054 (1094)
+|+
T Consensus 337 tGt 339 (340)
T 4aow_A 337 IGT 339 (340)
T ss_dssp C--
T ss_pred CcC
Confidence 885
No 81
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.96 E-value=5.1e-27 Score=299.61 Aligned_cols=271 Identities=19% Similarity=0.279 Sum_probs=236.2
Q ss_pred ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 001349 805 LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVW 882 (1094)
Q Consensus 805 ~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vW 882 (1094)
..+.+.+|.+.|++++|+|+ +|++|+.||+|+|||+.++ ..+..+.+|.+.|++++|+|+|++|++|+.||+|++|
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ--VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT--EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred cceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCC--ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 34677899999999999997 9999999999999999998 7888999999999999999999999999999999999
Q ss_pred ECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC-------------CCCceEEEEeC---C
Q 001349 883 SIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS-------------SKYPKCLALVQ---G 946 (1094)
Q Consensus 883 di~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~-------------~~~v~~l~~s~---~ 946 (1094)
|+.+++.. .....+...|.++. |+|+|..+++++.+|.+++|+. ...+.++.|++ .
T Consensus 83 ~~~~~~~~-~~~~~~~~~v~~~~-------~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 154 (814)
T 3mkq_A 83 NYNTGEKV-VDFEAHPDYIRSIA-------VHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS 154 (814)
T ss_dssp ETTTCCEE-EEEECCSSCEEEEE-------ECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEE
T ss_pred ECCCCcEE-EEEecCCCCEEEEE-------EeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCC
Confidence 99988632 23345678898888 9999999999999999999973 45689999987 3
Q ss_pred EEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeC--CccEEEEEECCCCEEEEEECCCCeEEEEec-CC
Q 001349 947 KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN--GLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TL 1023 (1094)
Q Consensus 947 ~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~--~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~ 1023 (1094)
.+++|+.||.|++||+.++...... ...|...+.+++|+| ++.++++++.|| .|++||+.+++.+..+. |.
T Consensus 155 ~l~~~~~dg~v~vwd~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-~i~~~d~~~~~~~~~~~~~~ 228 (814)
T 3mkq_A 155 TFASGCLDRTVKVWSLGQSTPNFTL-----TTGQERGVNYVDYYPLPDKPYMITASDDL-TIKIWDYQTKSCVATLEGHM 228 (814)
T ss_dssp EEEEEETTSEEEEEETTCSSCSEEE-----ECCCTTCCCEEEECCSTTCCEEEEECTTS-EEEEEETTTTEEEEEEECCS
T ss_pred EEEEEeCCCeEEEEECCCCcceeEE-----ecCCCCCEEEEEEEECCCCCEEEEEeCCC-EEEEEECCCCcEEEEEcCCC
Confidence 5999999999999999888765322 223448899999998 999999999886 99999999999999888 77
Q ss_pred CCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCC--EEEEEeCCCcEEEEeC
Q 001349 1024 SEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEE--FLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1024 ~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~--~L~sgs~DG~I~iWdl 1093 (1094)
..|.+++|+|+ ++++|+.||.|++||+.+++.+..+ ..|...|++++|+|+|. +++++ .|+.+.+|++
T Consensus 229 ~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 300 (814)
T 3mkq_A 229 SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL-NVGLERSWCIATHPTGRKNYIASG-FDNGFTVLSL 300 (814)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEE-CCSSSSEEEEEECTTCGGGEEEEE-ETTEEEEEEC
T ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ecCCCcEEEEEEccCCCceEEEEE-eCCCEEEEEc
Confidence 89999999998 8999999999999999999999999 47888999999999997 45554 5667888875
No 82
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.2e-26 Score=259.37 Aligned_cols=265 Identities=19% Similarity=0.232 Sum_probs=222.9
Q ss_pred hccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCc-ceeE
Q 001349 774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI-LHLI 848 (1094)
Q Consensus 774 ~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~-~~~~ 848 (1094)
..+....+ +++.++++++.||.|++||.. ........|.+.|.+++|+|+ ++++|+.||.|++|++.... ...+
T Consensus 19 ~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~ 97 (313)
T 3odt_A 19 QDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPL 97 (313)
T ss_dssp SCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-
T ss_pred CCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcc
Confidence 34444556 789999999999999999987 345677789999999999996 99999999999999987542 2457
Q ss_pred EEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEee-CCCeEEEEEeCC
Q 001349 849 QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIP-QGAGIKVHLRNG 927 (1094)
Q Consensus 849 ~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fsp-dg~~l~~~~~~g 927 (1094)
..+.+|...|.++.| +++++++++.||+|++|| .+. .......+..++.++. |.| ++..+++++.+|
T Consensus 98 ~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~-~~~~~~~~~~~v~~~~-------~~~~~~~~l~~~~~d~ 165 (313)
T 3odt_A 98 YTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGS-LVYNLQAHNASVWDAK-------VVSFSENKFLTASADK 165 (313)
T ss_dssp CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTE-EEEEEECCSSCEEEEE-------EEETTTTEEEEEETTS
T ss_pred cchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCc-EEEecccCCCceeEEE-------EccCCCCEEEEEECCC
Confidence 778899999999999 578999999999999999 332 3333445677888877 777 899999999999
Q ss_pred eEEEEc-----------CCCCceEEEEeC-CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccE
Q 001349 928 KTKLLN-----------SSKYPKCLALVQ-GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVY 995 (1094)
Q Consensus 928 ~i~l~~-----------~~~~v~~l~~s~-~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~ 995 (1094)
.+++|+ +...+.++.+++ +.+++|+.||.|++||+++++.. ..+.+|...|++++|+|++ .
T Consensus 166 ~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~------~~~~~~~~~i~~~~~~~~~-~ 238 (313)
T 3odt_A 166 TIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVL------RTYEGHESFVYCIKLLPNG-D 238 (313)
T ss_dssp CEEEEETTEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEE------EEEECCSSCEEEEEECTTS-C
T ss_pred CEEEEecCceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhh------hhhhcCCceEEEEEEecCC-C
Confidence 999998 356788999974 67999999999999999999877 5567889999999999999 5
Q ss_pred EEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC-EEEEEEcCCeEEEEECCCCcEEEEe
Q 001349 996 TASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETL 1059 (1094)
Q Consensus 996 las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~~~~~l 1059 (1094)
+++++.|| .|++||+.+++.+..+. +...|.+++|+|+ .+++++.||.|++||+.+++.....
T Consensus 239 l~~~~~dg-~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~~~~~~~ 303 (313)
T 3odt_A 239 IVSCGEDR-TVRIWSKENGSLKQVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEKSRWASED 303 (313)
T ss_dssp EEEEETTS-EEEEECTTTCCEEEEEECSSSCEEEEEECTTSCEEEEETTSCEEEEESCGGGCCC--
T ss_pred EEEEecCC-EEEEEECCCCceeEEEeccCceEEEEEEccCCCEEEEeCCCcEEEEeCCCCceeehh
Confidence 77888886 99999999999998888 6678999999999 6778999999999999988765544
No 83
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.96 E-value=1.4e-28 Score=283.98 Aligned_cols=244 Identities=12% Similarity=0.079 Sum_probs=194.0
Q ss_pred cccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 001349 809 DSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGN 886 (1094)
Q Consensus 809 ~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~ 886 (1094)
...|.++|++++|+|+ +|++|+.||+|++||+.++.+..+..+.+|.+.|++++|+|++++|++++.||+|++||+.+
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~ 86 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP 86 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence 3456789999999996 99999999999999999875567788899999999999999999999999999999999998
Q ss_pred Cc-e-EEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCC
Q 001349 887 EE-I-HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLAT 964 (1094)
Q Consensus 887 ~~-~-~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~ 964 (1094)
+. . .......+...|.++. |+|+++. +++|+.|+.|++||+.+
T Consensus 87 ~~~~~~~~~~~~~~~~v~~~~-------~~~~~~~----------------------------l~~~~~d~~i~iwd~~~ 131 (377)
T 3dwl_C 87 DGTWKQTLVLLRLNRAATFVR-------WSPNEDK----------------------------FAVGSGARVISVCYFEQ 131 (377)
T ss_dssp --CCCCEEECCCCSSCEEEEE-------CCTTSSC----------------------------CEEEESSSCEEECCC--
T ss_pred CCceeeeeEecccCCceEEEE-------ECCCCCE----------------------------EEEEecCCeEEEEEECC
Confidence 74 1 2333344566666666 6666653 88899999999999998
Q ss_pred CceeEEeccceeecC-CCCCeEEEEEeCCccEEEEEECCCCEEEEEECC------------------CCeEEEEecCCCC
Q 001349 965 GTFATIQTGHRKLLG-KANPVHALQVHNGLVYTASTSLDGAAVKMWSTS------------------NYNMVGSLPTLSE 1025 (1094)
Q Consensus 965 ~~~~~~~~~~~~~~~-h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~------------------~~~~~~~~~~~~~ 1025 (1094)
+..... ...+.+ |...|++++|+|++.++++++.|+ .|++||+. .++++..+.|...
T Consensus 132 ~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (377)
T 3dwl_C 132 ENDWWV---SKHLKRPLRSTILSLDWHPNNVLLAAGCADR-KAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGW 207 (377)
T ss_dssp ---CCC---CEEECSSCCSCEEEEEECTTSSEEEEEESSS-CEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSS
T ss_pred ccccee---eeEeecccCCCeEEEEEcCCCCEEEEEeCCC-EEEEEEEEecccCCCccccccccccchhhhhhcccCCce
Confidence 763110 134555 899999999999999999999997 99999985 3556666667888
Q ss_pred EEEEEEeCC--EEEEEEcCCeEEEEECCCCcE----EEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1026 VRAMVVSSE--LVYLGCKGGTVEIWDQKRQIR----IETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1026 v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~----~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
|.+++|+|+ ++++|+.||.|++||+.+++. +..+ .+|...|++++|+|+|++|++|+.|+.+ +|+.
T Consensus 208 v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~ 279 (377)
T 3dwl_C 208 VHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITV-KLSQLPLRSLLWANESAIVAAGYNYSPI-LLQG 279 (377)
T ss_dssp EEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCE-ECSSSCEEEEEEEETTEEEEEESSSSEE-EECC
T ss_pred EEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEee-cCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEe
Confidence 999999998 899999999999999999887 6667 5899999999999999999999877666 6654
No 84
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.96 E-value=1.2e-26 Score=291.52 Aligned_cols=263 Identities=19% Similarity=0.282 Sum_probs=216.1
Q ss_pred hhhcccccccccc-CcEEEEeeCCCCeEEEeCCc-------ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecC
Q 001349 772 LRELRKYSPLAFE-MVKVLSNGHDSSADFWNHRE-------LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGR 841 (1094)
Q Consensus 772 ~~~~~~~~~~~~d-~~~l~s~s~dg~I~vWd~~~-------~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~ 841 (1094)
|...+....+.++ +..|++|+.|++|++|++.. ....+.+|.+.|.+++|+|+ +|+||+.||+|+|||+.
T Consensus 381 H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~ 460 (694)
T 3dm0_A 381 HTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLA 460 (694)
T ss_dssp CSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 3334444555554 46899999999999999862 24567899999999999997 99999999999999999
Q ss_pred CCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEe--cccCccceeeeecCceEEEeeCC--
Q 001349 842 GSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQV--HDIKDQIQNLAVSNSILCFIPQG-- 917 (1094)
Q Consensus 842 t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~--~~~~~~V~~v~~~~~~~~fspdg-- 917 (1094)
++ ..+..+.+|.+.|++++|+|++++|+||+.|++|++||+.......+.. ..|...|.++. |+|++
T Consensus 461 ~~--~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~-------~~~~~~~ 531 (694)
T 3dm0_A 461 AG--VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVR-------FSPNTLQ 531 (694)
T ss_dssp TT--EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEE-------ECSCSSS
T ss_pred CC--cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEE-------EeCCCCc
Confidence 98 7888999999999999999999999999999999999987653222221 24667788887 88887
Q ss_pred CeEEEEEeCCeEEEEcC------------CCCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCC
Q 001349 918 AGIKVHLRNGKTKLLNS------------SKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANP 983 (1094)
Q Consensus 918 ~~l~~~~~~g~i~l~~~------------~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~ 983 (1094)
..+++++.|+.+++|+. ...|.++++++ ..+++|+.||+|++||+.+++.+.. +. +...
T Consensus 532 ~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~------~~-~~~~ 604 (694)
T 3dm0_A 532 PTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYS------LE-ANSV 604 (694)
T ss_dssp CEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEEC------CB-CSSC
T ss_pred ceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEE------ec-CCCc
Confidence 57899999999999984 45789999986 4699999999999999999987632 22 3467
Q ss_pred eEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCC--------------------CCEEEEEEeCC--EEEEEEc
Q 001349 984 VHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTL--------------------SEVRAMVVSSE--LVYLGCK 1041 (1094)
Q Consensus 984 V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~--------------------~~v~~l~~spd--~l~sgs~ 1041 (1094)
|.+++|+|++.++++++ ++ .|++||+.++..+..+... ..+++++|+|+ +|++|+.
T Consensus 605 v~~~~~sp~~~~l~~~~-~~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~ 682 (694)
T 3dm0_A 605 IHALCFSPNRYWLCAAT-EH-GIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYT 682 (694)
T ss_dssp EEEEEECSSSSEEEEEE-TT-EEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEET
T ss_pred EEEEEEcCCCcEEEEEc-CC-CEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcC
Confidence 99999999999888776 43 7999999999888776421 13788999998 8999999
Q ss_pred CCeEEEEECCC
Q 001349 1042 GGTVEIWDQKR 1052 (1094)
Q Consensus 1042 dg~I~vwd~~t 1052 (1094)
||+|+|||+..
T Consensus 683 Dg~i~iW~i~~ 693 (694)
T 3dm0_A 683 DGVIRVWGIGR 693 (694)
T ss_dssp TSEEEEEEC--
T ss_pred CCeEEEEeccC
Confidence 99999999853
No 85
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.96 E-value=1.2e-27 Score=270.43 Aligned_cols=264 Identities=14% Similarity=0.155 Sum_probs=197.0
Q ss_pred HHHHHHhhhccccccccccCcEEEEeeCCCCeEEEeCCc----ceeecccCCCcEEEEEEeC----CEEEEEECCCeEEE
Q 001349 766 KDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRE----LVHVDSSENGKVLSIACFR----DKIFSGHSDGTIKV 837 (1094)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~----~~~~~~~h~~~V~~l~fsp----d~LaSgs~Dg~I~v 837 (1094)
...+.+|...+....|.+++.+|++|+.|++|++||... ....+.+|.+.|++++|++ ++|+||+.||+|++
T Consensus 6 ~~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i 85 (316)
T 3bg1_A 6 NTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII 85 (316)
T ss_dssp --------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred eeecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence 344567777788888999999999999999999999863 3566789999999999974 39999999999999
Q ss_pred EecCCCcceeEEEecccCCCeEEEEEecC--CCEEEEEeCCCcEEEEECCCCc-eEEE-EecccCccceeeeecCceEEE
Q 001349 838 WTGRGSILHLIQQIREHTKAVTGLAILQS--GEMLYSGSLDKTARVWSIGNEE-IHCV-QVHDIKDQIQNLAVSNSILCF 913 (1094)
Q Consensus 838 Wd~~t~~~~~~~~l~~H~~~V~sv~fspd--g~~LaSgs~DgtI~vWdi~~~~-~~~~-~~~~~~~~V~~v~~~~~~~~f 913 (1094)
||+.++....+..+.+|...|++++|+|+ |.+|++|+.||+|++||+.++. .... ....+...+.++. |
T Consensus 86 Wd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~-------~ 158 (316)
T 3bg1_A 86 WREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVS-------W 158 (316)
T ss_dssp ECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCE-------E
T ss_pred EECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEE-------E
Confidence 99998755677788999999999999997 8899999999999999998763 2111 1234566777776 6
Q ss_pred eeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCc
Q 001349 914 IPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGL 993 (1094)
Q Consensus 914 spdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~ 993 (1094)
+|++..- . +.++...- .......+++|+.|++|++||+..+..... ...+.+|...|.+++|+|++
T Consensus 159 ~~~~~~~-------~--~~~~~~~~--~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~---~~~l~~h~~~V~~v~~sp~~ 224 (316)
T 3bg1_A 159 APAVVPG-------S--LIDHPSGQ--KPNYIKRFASGGCDNLIKLWKEEEDGQWKE---EQKLEAHSDWVRDVAWAPSI 224 (316)
T ss_dssp CCCCCC---------------CCSC--CCCCCCBEECCBTTSBCCEEEECTTSCEEE---EECCBCCSSCEEEEECCCCS
T ss_pred ccccCCc-------c--cccccccc--CccccceEEEecCCCeEEEEEeCCCCccce---eeecccCCCceEEEEecCCC
Confidence 6664210 0 00000000 000013589999999999999975531111 14677899999999999986
Q ss_pred ----cEEEEEECCCCEEEEEECCCC---e-EEEEe-cCCCCEEEEEEeCC--EEEEEEcCCeEEEEECC
Q 001349 994 ----VYTASTSLDGAAVKMWSTSNY---N-MVGSL-PTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQK 1051 (1094)
Q Consensus 994 ----~~las~s~Dg~~I~iwd~~~~---~-~~~~~-~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~ 1051 (1094)
.++++++.|+ +|++||+.+. . ....+ .|...|.+++|+|+ +|++|+.||+|++|+..
T Consensus 225 ~~~~~~las~s~D~-~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 225 GLPTSTIASCSQDG-RVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp SCSCCEEEEEETTC-EEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred CCCCceEEEEcCCC-eEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 7899999997 9999998762 1 11222 36788999999998 89999999999999975
No 86
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.8e-26 Score=262.28 Aligned_cols=268 Identities=14% Similarity=0.141 Sum_probs=226.2
Q ss_pred hhhccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCccee
Q 001349 772 LRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHL 847 (1094)
Q Consensus 772 ~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~ 847 (1094)
|...+....+.+++.++++++.||.|++||.. .....+.+|.+.|++++|+|+ +|++++.||+|++||+.++ +.
T Consensus 31 h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~ 108 (369)
T 3zwl_B 31 HERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNG--QC 108 (369)
T ss_dssp CSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC--CE
T ss_pred eeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--cE
Confidence 44455567788899999999999999999987 456778899999999999986 9999999999999999998 67
Q ss_pred EEEecccCCCeEEEEEecCCCEEEEEeCC-----CcEEEEECCCCce------------EEEEecccCccceeeeecCce
Q 001349 848 IQQIREHTKAVTGLAILQSGEMLYSGSLD-----KTARVWSIGNEEI------------HCVQVHDIKDQIQNLAVSNSI 910 (1094)
Q Consensus 848 ~~~l~~H~~~V~sv~fspdg~~LaSgs~D-----gtI~vWdi~~~~~------------~~~~~~~~~~~V~~v~~~~~~ 910 (1094)
+..+. |...|.+++|+|+++++++++.+ |.|++||+..+.. .....+.....+.++.
T Consensus 109 ~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 182 (369)
T 3zwl_B 109 VATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAG----- 182 (369)
T ss_dssp EEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEE-----
T ss_pred EEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEE-----
Confidence 77776 89999999999999999999999 9999999977541 1111111122566665
Q ss_pred EEEeeCCCeEEEEEeCCeEEEEcCC-------------CCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEeccce
Q 001349 911 LCFIPQGAGIKVHLRNGKTKLLNSS-------------KYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHR 975 (1094)
Q Consensus 911 ~~fspdg~~l~~~~~~g~i~l~~~~-------------~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~ 975 (1094)
|+|+++.++++..+|.+.+|+.. ..|.++.|++ ..+++++.||.|++||+.+++....+.
T Consensus 183 --~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--- 257 (369)
T 3zwl_B 183 --WSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE--- 257 (369)
T ss_dssp --ECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---
T ss_pred --EcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec---
Confidence 99999999999999999999853 4588888875 469999999999999999998874332
Q ss_pred eecCCCCCeEEEEEeCCccEEEEEECCCC-------------EEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEE
Q 001349 976 KLLGKANPVHALQVHNGLVYTASTSLDGA-------------AVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLG 1039 (1094)
Q Consensus 976 ~~~~h~~~V~sl~fs~~~~~las~s~Dg~-------------~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sg 1039 (1094)
+...+..+.|+|++.++++++.++. .+++||..+++.+..+. |...|.+++|+|+ ++++|
T Consensus 258 ----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 333 (369)
T 3zwl_B 258 ----TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASG 333 (369)
T ss_dssp ----CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred ----CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEE
Confidence 5678999999999999999987753 79999999999998888 7889999999998 89999
Q ss_pred EcCCeEEEEECCCCcEE
Q 001349 1040 CKGGTVEIWDQKRQIRI 1056 (1094)
Q Consensus 1040 s~dg~I~vwd~~t~~~~ 1056 (1094)
+.||.|++|++.++...
T Consensus 334 ~~dg~v~iw~~~~~~~~ 350 (369)
T 3zwl_B 334 GEDGFIRLHHFEKSYFD 350 (369)
T ss_dssp ETTSEEEEEEECHHHHT
T ss_pred cCCCeEEEEECccccch
Confidence 99999999999876543
No 87
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.95 E-value=1.4e-26 Score=268.78 Aligned_cols=258 Identities=10% Similarity=0.113 Sum_probs=217.3
Q ss_pred cccccCcEEEEeeCCCCeEEEeCCc--------ceeecccCCCcEEEEEEeCC---------EEEEEECCCeEEEEecCC
Q 001349 780 PLAFEMVKVLSNGHDSSADFWNHRE--------LVHVDSSENGKVLSIACFRD---------KIFSGHSDGTIKVWTGRG 842 (1094)
Q Consensus 780 ~~~~d~~~l~s~s~dg~I~vWd~~~--------~~~~~~~h~~~V~~l~fspd---------~LaSgs~Dg~I~vWd~~t 842 (1094)
.+.+++.++++++.||.|++|+... ....+.+|...|++++|+|+ +|++|+.||+|++||+.+
T Consensus 21 ~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~ 100 (397)
T 1sq9_A 21 SVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITR 100 (397)
T ss_dssp EEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEE
T ss_pred EEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccC
Confidence 3444558999999999999999972 46777899999999999964 899999999999999998
Q ss_pred Cccee-----EEEeccc-----CCCeEEEEEe----cCCCE-EEEEeCCCcEEEEECCC------Cc-eE-----EEEe-
Q 001349 843 SILHL-----IQQIREH-----TKAVTGLAIL----QSGEM-LYSGSLDKTARVWSIGN------EE-IH-----CVQV- 894 (1094)
Q Consensus 843 ~~~~~-----~~~l~~H-----~~~V~sv~fs----pdg~~-LaSgs~DgtI~vWdi~~------~~-~~-----~~~~- 894 (1094)
+ .. +..+..| ...|++++|+ |++++ |++++.||.|++||+.+ ++ .. .+..
T Consensus 101 ~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 178 (397)
T 1sq9_A 101 E--DETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGT 178 (397)
T ss_dssp C--TTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEE
T ss_pred C--cccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeee
Confidence 7 44 7788888 5999999999 99999 99999999999999988 43 22 3332
Q ss_pred ----cccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC------------------CCCceEEEEeC--CEEEE
Q 001349 895 ----HDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS------------------SKYPKCLALVQ--GKVYC 950 (1094)
Q Consensus 895 ----~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~------------------~~~v~~l~~s~--~~l~s 950 (1094)
..+...+.++. |+|++ .++++..+|.+.+|+. ...+.++.|++ ..+++
T Consensus 179 ~~~~~~~~~~i~~~~-------~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~ 250 (397)
T 1sq9_A 179 VESPMTPSQFATSVD-------ISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAI 250 (397)
T ss_dssp ECCSSSSCCCCCEEE-------ECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEE
T ss_pred eccccCCCCCceEEE-------ECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEE
Confidence 34567788877 99999 9999999999999873 45688888875 56999
Q ss_pred EEcC---CeEEEEECCCCceeEEeccceeecC-------------CCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCC
Q 001349 951 GCQD---GAIQEIDLATGTFATIQTGHRKLLG-------------KANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNY 1014 (1094)
Q Consensus 951 gs~D---g~I~iwDl~~~~~~~~~~~~~~~~~-------------h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~ 1014 (1094)
++.| |.|++||+.+++.+. .+.+ |...|.+++|+|++.++++++.|| .|++||+.++
T Consensus 251 ~~~d~~~g~i~i~d~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~ 323 (397)
T 1sq9_A 251 AHDSNSFGCITLYETEFGERIG------SLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG-KLRFWDVKTK 323 (397)
T ss_dssp EEEETTEEEEEEEETTTCCEEE------EECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTS-EEEEEETTTT
T ss_pred EecCCCCceEEEEECCCCcccc------eeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCC-eEEEEEcCCC
Confidence 9999 999999999998774 4444 889999999999999999999987 9999999999
Q ss_pred eEEEEec-------C---------------CCCEEEEEEeCC------------EEEEEEcCCeEEEEECCCCc
Q 001349 1015 NMVGSLP-------T---------------LSEVRAMVVSSE------------LVYLGCKGGTVEIWDQKRQI 1054 (1094)
Q Consensus 1015 ~~~~~~~-------~---------------~~~v~~l~~spd------------~l~sgs~dg~I~vwd~~t~~ 1054 (1094)
+.+..+. | ...|.+++|+|+ ++++|+.||.|++||+.+|+
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 324 ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 9998887 4 688999999998 79999999999999998764
No 88
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.95 E-value=5.8e-27 Score=274.49 Aligned_cols=263 Identities=13% Similarity=0.145 Sum_probs=217.4
Q ss_pred cEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEE
Q 001349 815 KVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCV 892 (1094)
Q Consensus 815 ~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~ 892 (1094)
.+++++|+|+ +|++|+.||+|++||+.++ .....+..| ..+....|++++++|++|+.||+|++||+.+++ ..
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~--~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~ 132 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIR--DGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL--QR 132 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSE--ETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE--EE
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEeccc--ceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc--ee
Confidence 3457899986 9999999999999999887 445555555 445556789999999999999999999999874 33
Q ss_pred Ee-cccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC------------CCCceEEEEeC--CEEEEEEcCCeE
Q 001349 893 QV-HDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS------------SKYPKCLALVQ--GKVYCGCQDGAI 957 (1094)
Q Consensus 893 ~~-~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~------------~~~v~~l~~s~--~~l~sgs~Dg~I 957 (1094)
.. ..+...|.++. |+|+++.+++++.++.+++|+. ...|.+++|++ ..+++|+.||.|
T Consensus 133 ~~~~~h~~~v~~~~-------~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v 205 (420)
T 3vl1_A 133 EIDQAHVSEITKLK-------FFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTI 205 (420)
T ss_dssp EETTSSSSCEEEEE-------ECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred eecccccCccEEEE-------ECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcE
Confidence 33 46788999988 9999999999999999999984 45689999985 469999999999
Q ss_pred EEEECCCCceeEEeccceeecCCC---------------------CCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeE
Q 001349 958 QEIDLATGTFATIQTGHRKLLGKA---------------------NPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNM 1016 (1094)
Q Consensus 958 ~iwDl~~~~~~~~~~~~~~~~~h~---------------------~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~ 1016 (1094)
++||+++++....+..+ ..|. ..+.+++|+|++.++++++.|| .|++||+++++.
T Consensus 206 ~iwd~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~i~d~~~~~~ 281 (420)
T 3vl1_A 206 RLWECGTGTTIHTFNRK---ENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSG-VITVHNVFSKEQ 281 (420)
T ss_dssp EEEETTTTEEEEEECBT---TBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTS-CEEEEETTTCCE
T ss_pred EEeECCCCceeEEeecC---CCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCC-eEEEEECCCCce
Confidence 99999999887554322 1233 4444555578899999999997 999999999988
Q ss_pred EEEec--CCCCEEEEEEeCC---EEEEEEcCCeEEEEECCCCcE-EEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEE
Q 001349 1017 VGSLP--TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIR-IETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQA 1090 (1094)
Q Consensus 1017 ~~~~~--~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~~~-~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~i 1090 (1094)
...+. |...|.+++|+|+ ++++|+.||.|++||+.+++. +..+...|...|+++.| +++++|++++.||+|++
T Consensus 282 ~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~i 360 (420)
T 3vl1_A 282 TIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKL 360 (420)
T ss_dssp EEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEE
T ss_pred eEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEE
Confidence 87776 5688999999998 899999999999999998754 67775457778888865 57889999999999999
Q ss_pred EeCC
Q 001349 1091 WGLS 1094 (1094)
Q Consensus 1091 Wdls 1094 (1094)
|++.
T Consensus 361 w~~~ 364 (420)
T 3vl1_A 361 DIIS 364 (420)
T ss_dssp EEEC
T ss_pred Eecc
Confidence 9963
No 89
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.95 E-value=8.5e-27 Score=270.07 Aligned_cols=243 Identities=13% Similarity=0.141 Sum_probs=198.6
Q ss_pred eeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEec-CCCEEEEEeCCCcEEE
Q 001349 806 VHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQ-SGEMLYSGSLDKTARV 881 (1094)
Q Consensus 806 ~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fsp-dg~~LaSgs~DgtI~v 881 (1094)
...+.+|.+.|++++|+|+ +|++|+.||+|++||+.++.........+|.+.|++++|+| ++++|++++.||+|++
T Consensus 66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~i 145 (383)
T 3ei3_B 66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTL 145 (383)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEE
T ss_pred EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEE
Confidence 3456789999999999985 89999999999999999884444444457999999999999 7899999999999999
Q ss_pred EECCCCceEEEEec-ccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEE
Q 001349 882 WSIGNEEIHCVQVH-DIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEI 960 (1094)
Q Consensus 882 Wdi~~~~~~~~~~~-~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iw 960 (1094)
||+.+.....+... .+...|.++. |+|+++ .+++|+.||.|++|
T Consensus 146 wd~~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~----------------------------~l~~~~~d~~i~i~ 190 (383)
T 3ei3_B 146 RDFSGSVIQVFAKTDSWDYWYCCVD-------VSVSRQ----------------------------MLATGDSTGRLLLL 190 (383)
T ss_dssp EETTSCEEEEEECCCCSSCCEEEEE-------EETTTT----------------------------EEEEEETTSEEEEE
T ss_pred EECCCCceEEEeccCCCCCCeEEEE-------ECCCCC----------------------------EEEEECCCCCEEEE
Confidence 99997544333322 2335566666 777776 38889999999999
Q ss_pred ECCCCceeEEeccceeecCCCCCeEEEEEeCCcc-EEEEEECCCCEEEEEECCC----CeEEEEecCCCCEEEEEEeC-C
Q 001349 961 DLATGTFATIQTGHRKLLGKANPVHALQVHNGLV-YTASTSLDGAAVKMWSTSN----YNMVGSLPTLSEVRAMVVSS-E 1034 (1094)
Q Consensus 961 Dl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~-~las~s~Dg~~I~iwd~~~----~~~~~~~~~~~~v~~l~~sp-d 1034 (1094)
|++ +... ..+.+|...|.+++|+|++. ++++++.|+ .|++||+++ +.++..+.|...|.+++|+| +
T Consensus 191 d~~-~~~~------~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 262 (383)
T 3ei3_B 191 GLD-GHEI------FKEKLHKAKVTHAEFNPRCDWLMATSSVDA-TVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 262 (383)
T ss_dssp ETT-SCEE------EEEECSSSCEEEEEECSSCTTEEEEEETTS-EEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTT
T ss_pred ECC-CCEE------EEeccCCCcEEEEEECCCCCCEEEEEeCCC-EEEEEeCCCCCcccceEEEecCCCceEEEEEcCCC
Confidence 994 5554 46678999999999999998 899999986 999999997 77888888999999999999 6
Q ss_pred --EEEEEEcCCeEEEEECCCCcEEEEecccCC-----------------cceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1035 --LVYLGCKGGTVEIWDQKRQIRIETLQTGTS-----------------GKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1035 --~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~-----------------~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
++++++.||.|++||+.+++....+. +|. +.+..++|+|||++ +|+.||+|++||+.
T Consensus 263 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~ 338 (383)
T 3ei3_B 263 STKLLTTDQRNEIRVYSSYDWSKPDQII-IHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDAN 338 (383)
T ss_dssp SCEEEEEESSSEEEEEETTBTTSCSEEE-ECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETT
T ss_pred CCEEEEEcCCCcEEEEECCCCccccccc-cccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecC
Confidence 89999999999999999887766653 332 23445677777766 77899999999973
No 90
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.95 E-value=5.5e-26 Score=270.41 Aligned_cols=264 Identities=17% Similarity=0.266 Sum_probs=215.5
Q ss_pred cccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeC--C--EEEEEECCCeEEEEecCCCcce-----
Q 001349 778 YSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFR--D--KIFSGHSDGTIKVWTGRGSILH----- 846 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fsp--d--~LaSgs~Dg~I~vWd~~t~~~~----- 846 (1094)
...+.+++ .+++|+.||+|++||.. .....+.+|.+.|.+++|++ + ++++|+.||+|++||+.++...
T Consensus 167 ~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~ 245 (464)
T 3v7d_B 167 ALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGE 245 (464)
T ss_dssp EEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC-----
T ss_pred EEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccc
Confidence 34444445 99999999999999987 45677889999999999984 3 8999999999999999876321
Q ss_pred ----------------eEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCce
Q 001349 847 ----------------LIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSI 910 (1094)
Q Consensus 847 ----------------~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~ 910 (1094)
.+..+.+|...|.++ +++++++++|+.||+|++||+.+++. ......+...|.++.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~v~~~~----- 317 (464)
T 3v7d_B 246 EHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKC-LYILSGHTDRIYSTI----- 317 (464)
T ss_dssp -CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEE-----
T ss_pred cCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcE-EEEecCCCCCEEEEE-----
Confidence 266788999999887 57899999999999999999998752 222234566677766
Q ss_pred EEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEe
Q 001349 911 LCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVH 990 (1094)
Q Consensus 911 ~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs 990 (1094)
|+|+++ .+++|+.||.|++||+.+++.. ..+.+|...|.++.|+
T Consensus 318 --~~~~~~----------------------------~l~sg~~dg~i~vwd~~~~~~~------~~~~~h~~~v~~~~~~ 361 (464)
T 3v7d_B 318 --YDHERK----------------------------RCISASMDTTIRIWDLENGELM------YTLQGHTALVGLLRLS 361 (464)
T ss_dssp --EETTTT----------------------------EEEEEETTSCEEEEETTTTEEE------EEECCCSSCEEEEEEC
T ss_pred --EcCCCC----------------------------EEEEEeCCCcEEEEECCCCcEE------EEEeCCCCcEEEEEEc
Confidence 777766 4889999999999999999887 5667899999999997
Q ss_pred CCccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceE
Q 001349 991 NGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQ 1068 (1094)
Q Consensus 991 ~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~ 1068 (1094)
+.++++++.|| .|++||+.++.....+.+...+..++|+++ ++++|+ ||.|++||+.+++.+..+..+|.+.|+
T Consensus 362 --~~~l~s~s~dg-~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~ 437 (464)
T 3v7d_B 362 --DKFLVSAAADG-SIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIW 437 (464)
T ss_dssp --SSEEEEEETTS-EEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEE
T ss_pred --CCEEEEEeCCC-cEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEE
Confidence 46889999997 999999999888888777777777788777 788877 899999999999999875568899999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEE
Q 001349 1069 CMALDDNEEFLVIGTSDGRIQAW 1091 (1094)
Q Consensus 1069 ~l~~Spdg~~L~sgs~DG~I~iW 1091 (1094)
+++|+ ++.++++++.||.+.+|
T Consensus 438 ~v~~~-~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 438 SVNFK-GKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp EEEEE-TTEEEEEEEETTEEEEE
T ss_pred EEEec-CCEEEEEEEeCCeEEEE
Confidence 99997 44556666777765544
No 91
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.95 E-value=3.4e-27 Score=269.84 Aligned_cols=246 Identities=13% Similarity=0.192 Sum_probs=202.5
Q ss_pred eeecccCCCcEEEEEEeC-----C-EEEEEECCCeEEEEecCCCcceeEEEecc-----cCCCeEEEEEecC----CCEE
Q 001349 806 VHVDSSENGKVLSIACFR-----D-KIFSGHSDGTIKVWTGRGSILHLIQQIRE-----HTKAVTGLAILQS----GEML 870 (1094)
Q Consensus 806 ~~~~~~h~~~V~~l~fsp-----d-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~-----H~~~V~sv~fspd----g~~L 870 (1094)
.....+|.+.|++++|+| + .+++++.+|.|++||+.++ ..+..+.. |...|++++|+|+ |.+|
T Consensus 11 ~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l 88 (366)
T 3k26_A 11 NSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQ--GEIRLLQSYVDADADENFYTCAWTYDSNTSHPLL 88 (366)
T ss_dssp EEEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGG--GCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEE
T ss_pred EEeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCC--cEEEeeeeccccCCCCcEEEEEeccCCCCCCCEE
Confidence 345668999999999997 2 6777777889999999977 44444443 6678999999998 6799
Q ss_pred EEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEee-CCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEE
Q 001349 871 YSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIP-QGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVY 949 (1094)
Q Consensus 871 aSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fsp-dg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~ 949 (1094)
++|+.||+|++||+.+++... ....+...|.++. |+| ++. .++
T Consensus 89 ~~~~~dg~i~v~d~~~~~~~~-~~~~~~~~i~~~~-------~~~~~~~----------------------------~l~ 132 (366)
T 3k26_A 89 AVAGSRGIIRIINPITMQCIK-HYVGHGNAINELK-------FHPRDPN----------------------------LLL 132 (366)
T ss_dssp EEEETTCEEEEECTTTCCEEE-EEESCCSCEEEEE-------ECSSCTT----------------------------EEE
T ss_pred EEecCCCEEEEEEchhceEee-eecCCCCcEEEEE-------ECCCCCC----------------------------EEE
Confidence 999999999999999875322 2234566777776 666 554 488
Q ss_pred EEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec--------
Q 001349 950 CGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-------- 1021 (1094)
Q Consensus 950 sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-------- 1021 (1094)
+|+.||.|++||+.+++....+. .+.+|...|.+++|+|++.++++++.|| .|++||+++++....+.
T Consensus 133 s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~ 208 (366)
T 3k26_A 133 SVSKDHALRLWNIQTDTLVAIFG---GVEGHRDEVLSADYDLLGEKIMSCGMDH-SLKLWRINSKRMMNAIKESYDYNPN 208 (366)
T ss_dssp EEETTSCEEEEETTTTEEEEEEC---STTSCSSCEEEEEECTTSSEEEEEETTS-CEEEEESCSHHHHHHHHHHHTCCGG
T ss_pred EEeCCCeEEEEEeecCeEEEEec---ccccccCceeEEEECCCCCEEEEecCCC-CEEEEECCCCccccccceeEEecCC
Confidence 99999999999999988764321 1257899999999999999999999997 99999998765443332
Q ss_pred ---------------------CCCCEEEEEEeCCEEEEEEcCCeEEEEECCCCcE--------------EEEecccCCcc
Q 001349 1022 ---------------------TLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIR--------------IETLQTGTSGK 1066 (1094)
Q Consensus 1022 ---------------------~~~~v~~l~~spd~l~sgs~dg~I~vwd~~t~~~--------------~~~l~~~h~~~ 1066 (1094)
|...|.+++|+++++++++.||.|++||+.++.. +..+ .+|...
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 287 (366)
T 3k26_A 209 KTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRF-DYSQCD 287 (366)
T ss_dssp GCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEE-ECSSCC
T ss_pred CCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccc-cccCCc
Confidence 7788999999988999999999999999987643 6666 588899
Q ss_pred eEEEEEcCC--CCEEEEEeCCCcEEEEeCC
Q 001349 1067 VQCMALDDN--EEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1067 I~~l~~Spd--g~~L~sgs~DG~I~iWdls 1094 (1094)
|++++|+|+ +++|++|+.||.|++||+.
T Consensus 288 v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~ 317 (366)
T 3k26_A 288 IWYMRFSMDFWQKMLALGNQVGKLYVWDLE 317 (366)
T ss_dssp SSCCCCEECTTSSEEEEECTTSCEEEEECC
T ss_pred EEEEEEcCCCCCcEEEEEecCCcEEEEECC
Confidence 999999999 9999999999999999974
No 92
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.95 E-value=5.8e-27 Score=267.23 Aligned_cols=276 Identities=11% Similarity=0.105 Sum_probs=213.7
Q ss_pred hccccccccccCcEE-EEeeC---CCCeEEEeCCcc--e-eecccCCCcEEEEEEeC-----CEEEEEECCCeEEEEecC
Q 001349 774 ELRKYSPLAFEMVKV-LSNGH---DSSADFWNHREL--V-HVDSSENGKVLSIACFR-----DKIFSGHSDGTIKVWTGR 841 (1094)
Q Consensus 774 ~~~~~~~~~~d~~~l-~s~s~---dg~I~vWd~~~~--~-~~~~~h~~~V~~l~fsp-----d~LaSgs~Dg~I~vWd~~ 841 (1094)
..+....+.+++..+ ++++. ||.|++||.... . ....+|.+.|++++|+| ++|++|+.||+|++||+.
T Consensus 19 ~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 98 (357)
T 3i2n_A 19 YTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLE 98 (357)
T ss_dssp SCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTT
T ss_pred CceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCC
Confidence 344556677778655 56665 999999998732 2 22347999999999997 389999999999999999
Q ss_pred CCcceeEEEecccCCCeEEEEE------ecCCCEEEEEeCCCcEEEEECCCCc--eEEEEeccc--CccceeeeecCceE
Q 001349 842 GSILHLIQQIREHTKAVTGLAI------LQSGEMLYSGSLDKTARVWSIGNEE--IHCVQVHDI--KDQIQNLAVSNSIL 911 (1094)
Q Consensus 842 t~~~~~~~~l~~H~~~V~sv~f------spdg~~LaSgs~DgtI~vWdi~~~~--~~~~~~~~~--~~~V~~v~~~~~~~ 911 (1094)
++. ..+..+.+|.+.|+++.| +|++++|++++.||+|++||+.++. ...+..+.. ...+.++.+..
T Consensus 99 ~~~-~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--- 174 (357)
T 3i2n_A 99 APE-MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGN--- 174 (357)
T ss_dssp SCS-SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEEC---
T ss_pred CCC-ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEe---
Confidence 883 277888999999999955 6799999999999999999999875 222222211 33666665332
Q ss_pred EEeeCCCeEEEEEeCCeEEEEcC-----------CCCceEEEEeC-----CEEEEEEcCCeEEEEECCCCceeEEeccce
Q 001349 912 CFIPQGAGIKVHLRNGKTKLLNS-----------SKYPKCLALVQ-----GKVYCGCQDGAIQEIDLATGTFATIQTGHR 975 (1094)
Q Consensus 912 ~fspdg~~l~~~~~~g~i~l~~~-----------~~~v~~l~~s~-----~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~ 975 (1094)
+|+|++..++++..+|.+++|+. ...+.++.|++ +.+++|+.||.|++||++++.....+.. .
T Consensus 175 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~ 253 (357)
T 3i2n_A 175 AYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFAS-V 253 (357)
T ss_dssp CCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEE-E
T ss_pred ccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceee-e
Confidence 27899999999999999999984 46789999975 5699999999999999987665422211 1
Q ss_pred eecCCCCCeEEEEEeCCcc-EEEEEECCCCEEEEEECCCC-------------------eEEEEec-CCCCEEEEEEeCC
Q 001349 976 KLLGKANPVHALQVHNGLV-YTASTSLDGAAVKMWSTSNY-------------------NMVGSLP-TLSEVRAMVVSSE 1034 (1094)
Q Consensus 976 ~~~~h~~~V~sl~fs~~~~-~las~s~Dg~~I~iwd~~~~-------------------~~~~~~~-~~~~v~~l~~spd 1034 (1094)
.+.+|...|++++|+|++. ++++++.|| .|++||++++ ..+..+. |...|.+++|+|+
T Consensus 254 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 332 (357)
T 3i2n_A 254 SEKAHKSTVWQVRHLPQNRELFLTAGGAG-GLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPD 332 (357)
T ss_dssp EEECCSSCEEEEEEETTEEEEEEEEETTS-EEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSS
T ss_pred ccCCCcCCEEEEEECCCCCcEEEEEeCCC-cEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCC
Confidence 3348999999999999988 899999987 9999999754 3455555 7788999999998
Q ss_pred --EEE-EEEcCCeEEEEECCCCcE
Q 001349 1035 --LVY-LGCKGGTVEIWDQKRQIR 1055 (1094)
Q Consensus 1035 --~l~-sgs~dg~I~vwd~~t~~~ 1055 (1094)
+++ +|+.||.|++||+.+.+.
T Consensus 333 ~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 333 KRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp STTEEEEEETTSEEEEEEECC---
T ss_pred CCeEEEEecCCCcEEEEECCCccc
Confidence 566 899999999999987654
No 93
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.95 E-value=4.9e-27 Score=277.83 Aligned_cols=269 Identities=11% Similarity=0.099 Sum_probs=200.0
Q ss_pred ccccccc-cCcEEEEeeCCCCeEEEeCCc----ceeecccCCCcEEEEEEeC-C--EEEEEECCCeEEEEecCCCcceeE
Q 001349 777 KYSPLAF-EMVKVLSNGHDSSADFWNHRE----LVHVDSSENGKVLSIACFR-D--KIFSGHSDGTIKVWTGRGSILHLI 848 (1094)
Q Consensus 777 ~~~~~~~-d~~~l~s~s~dg~I~vWd~~~----~~~~~~~h~~~V~~l~fsp-d--~LaSgs~Dg~I~vWd~~t~~~~~~ 848 (1094)
....|.+ ++..||+|+.||+|+|||+.. ....+.+|.+.|++++|+| + +|+||+.||+|++||+.++....+
T Consensus 123 ~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~ 202 (435)
T 4e54_B 123 TSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVF 202 (435)
T ss_dssp EEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEE
T ss_pred EEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEE
Confidence 3445554 567899999999999999862 2344568999999999997 3 999999999999999988733223
Q ss_pred EEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCC-eEEEEEeCC
Q 001349 849 QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGA-GIKVHLRNG 927 (1094)
Q Consensus 849 ~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~-~l~~~~~~g 927 (1094)
.....+...+.+++|+|++++|++|+.||+|++||+++.... ....|...|.++. |+|++. .+++++.|+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~--~~~~h~~~v~~v~-------~~p~~~~~~~s~s~d~ 273 (435)
T 4e54_B 203 ASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELW--NLRMHKKKVTHVA-------LNPCCDWFLATASVDQ 273 (435)
T ss_dssp ECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCC--CSBCCSSCEEEEE-------ECTTCSSEEEEEETTS
T ss_pred eccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeE--EEecccceEEeee-------ecCCCceEEEEecCcc
Confidence 333344556889999999999999999999999999875332 2345678888887 999887 567788999
Q ss_pred eEEEEcC---------------CCCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEe
Q 001349 928 KTKLLNS---------------SKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVH 990 (1094)
Q Consensus 928 ~i~l~~~---------------~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs 990 (1094)
.+++|+. ...|.+++|++ ..|++|+.||.|++||+.++.....+..+.........+....|+
T Consensus 274 ~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (435)
T 4e54_B 274 TVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWH 353 (435)
T ss_dssp BCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEEC
T ss_pred eeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEc
Confidence 9999973 34688999985 479999999999999999988764433221111111223344566
Q ss_pred CCccEEEEEE-----------CCCCEEEEEECCCCeEEEEec--CCCCEEEE-EEeCC--EEEEEEcCCeEEEEECCCCc
Q 001349 991 NGLVYTASTS-----------LDGAAVKMWSTSNYNMVGSLP--TLSEVRAM-VVSSE--LVYLGCKGGTVEIWDQKRQI 1054 (1094)
Q Consensus 991 ~~~~~las~s-----------~Dg~~I~iwd~~~~~~~~~~~--~~~~v~~l-~~spd--~l~sgs~dg~I~vwd~~t~~ 1054 (1094)
+++.++++++ .+++.|++||..+++.+..+. |...|.++ +|+|+ +|++|+ |+.|+|||+.+++
T Consensus 354 ~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk 432 (435)
T 4e54_B 354 PRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEAR 432 (435)
T ss_dssp SSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC---
T ss_pred CCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCe
Confidence 6665555543 234589999999999988875 56778777 69998 676665 8899999999886
Q ss_pred E
Q 001349 1055 R 1055 (1094)
Q Consensus 1055 ~ 1055 (1094)
.
T Consensus 433 ~ 433 (435)
T 4e54_B 433 T 433 (435)
T ss_dssp -
T ss_pred e
Confidence 5
No 94
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.95 E-value=9.4e-27 Score=274.88 Aligned_cols=272 Identities=11% Similarity=0.152 Sum_probs=201.0
Q ss_pred cCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCc---------ceeEEEecccC------------CCeEEEEEecCC
Q 001349 811 SENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI---------LHLIQQIREHT------------KAVTGLAILQSG 867 (1094)
Q Consensus 811 ~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~---------~~~~~~l~~H~------------~~V~sv~fspdg 867 (1094)
.|.+.|++++|+|+ +|++|+.||.|+|||+.++. ......+.+|. +.|++++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 46799999999996 99999999999999998762 12578889998 889999999998
Q ss_pred --CEEEEEeCCCcEEEEECCCCceEEEEec--ccC------ccceeeeecCceEEEeeCCCeEEEEEeCCeEEE--EcCC
Q 001349 868 --EMLYSGSLDKTARVWSIGNEEIHCVQVH--DIK------DQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKL--LNSS 935 (1094)
Q Consensus 868 --~~LaSgs~DgtI~vWdi~~~~~~~~~~~--~~~------~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l--~~~~ 935 (1094)
.+|++++.||+|++||+.++........ ... ..+..+.+ ..+.+.+ . ... ....+. ..|.
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~~~~~-~-~~~--~~~~~~~~~~h~ 177 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRV----PVFRPMD-L-MVE--ASPRRIFANAHT 177 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCC----CEEEEEE-E-EEE--EEEEEEECSCCS
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEe----ccccchh-e-eee--ccceEEeccCCC
Confidence 8999999999999999987532111000 000 01111110 0012221 0 010 111222 2477
Q ss_pred CCceEEEEeC--CEEEEEEcCCeEEEEECCCC-ceeEEec-cceeecCCCCCeEEEEEeCCc-cEEEEEECCCCEEEEEE
Q 001349 936 KYPKCLALVQ--GKVYCGCQDGAIQEIDLATG-TFATIQT-GHRKLLGKANPVHALQVHNGL-VYTASTSLDGAAVKMWS 1010 (1094)
Q Consensus 936 ~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~-~~~~~~~-~~~~~~~h~~~V~sl~fs~~~-~~las~s~Dg~~I~iwd 1010 (1094)
..|.+++|++ ..+++| .||.|++||+.++ .....+. ....+.+|...|++++|+|++ .++++++.|| .|++||
T Consensus 178 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg-~i~iwd 255 (447)
T 3dw8_B 178 YHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKG-TIRLCD 255 (447)
T ss_dssp SCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTS-CEEEEE
T ss_pred cceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCC-eEEEEE
Confidence 8899999986 457777 8999999999843 3332211 012466899999999999998 8999999997 999999
Q ss_pred CCCCeE----EEEecCC-C------------CEEEEEEeCC--EEEEEEcCCeEEEEECCC-CcEEEEecccCCcc----
Q 001349 1011 TSNYNM----VGSLPTL-S------------EVRAMVVSSE--LVYLGCKGGTVEIWDQKR-QIRIETLQTGTSGK---- 1066 (1094)
Q Consensus 1011 ~~~~~~----~~~~~~~-~------------~v~~l~~spd--~l~sgs~dg~I~vwd~~t-~~~~~~l~~~h~~~---- 1066 (1094)
++++.. +..+..+ . .|.+++|+|+ ++++++. |.|++||+.+ ++++..+ .+|...
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~-~~~~~~~~~l 333 (447)
T 3dw8_B 256 MRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETY-QVHEYLRSKL 333 (447)
T ss_dssp TTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCE-ESCGGGTTTH
T ss_pred CcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcccccee-eccccccccc
Confidence 999886 6777643 3 8999999998 8888888 9999999997 8888888 466532
Q ss_pred -----------eEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1067 -----------VQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1067 -----------I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
+..++|+|++++|++|+.||.|++||+.
T Consensus 334 ~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~ 372 (447)
T 3dw8_B 334 CSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRN 372 (447)
T ss_dssp HHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETT
T ss_pred cccccccccccceEEEECCCCCEEEEeccCCEEEEEEcC
Confidence 3349999999999999999999999973
No 95
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1e-27 Score=289.22 Aligned_cols=235 Identities=12% Similarity=0.136 Sum_probs=179.9
Q ss_pred EEEEEECCCeEEEEecCCCccee--EEEecccCCCeEEEEEecC------CCEEEEEeCCCcEEEEECCCCceEEEEecc
Q 001349 825 KIFSGHSDGTIKVWTGRGSILHL--IQQIREHTKAVTGLAILQS------GEMLYSGSLDKTARVWSIGNEEIHCVQVHD 896 (1094)
Q Consensus 825 ~LaSgs~Dg~I~vWd~~t~~~~~--~~~l~~H~~~V~sv~fspd------g~~LaSgs~DgtI~vWdi~~~~~~~~~~~~ 896 (1094)
.+++++.||+|+|||+.++.... ..++.+|.+.|++++|+|+ +.+|++|+.||+|++||+.++.........
T Consensus 175 ~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~ 254 (524)
T 2j04_B 175 MFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM 254 (524)
T ss_dssp -------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC
T ss_pred hhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee
Confidence 67889999999999998874222 3456778899999999996 579999999999999999875311000000
Q ss_pred cCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC-CEEEEEEcCCeEEEEECCCCceeEEeccce
Q 001349 897 IKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ-GKVYCGCQDGAIQEIDLATGTFATIQTGHR 975 (1094)
Q Consensus 897 ~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~-~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~ 975 (1094)
...+ ...+-.+...|.+++|++ +.|++|+.||+|++||++++.... .
T Consensus 255 ~~~p---------------------------~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~-----~ 302 (524)
T 2j04_B 255 CEKP---------------------------SLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPS-----F 302 (524)
T ss_dssp CCSC---------------------------SEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCS-----E
T ss_pred ecCc---------------------------eEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCce-----E
Confidence 0000 011223456677888764 579999999999999999764321 3
Q ss_pred eecCCCCCeEEE--EEeCCc-cEEEEEECCCCEEEEEECCCCeEEEEec-CC--CCEEEEEEeCC--EEEEEEcCCeEEE
Q 001349 976 KLLGKANPVHAL--QVHNGL-VYTASTSLDGAAVKMWSTSNYNMVGSLP-TL--SEVRAMVVSSE--LVYLGCKGGTVEI 1047 (1094)
Q Consensus 976 ~~~~h~~~V~sl--~fs~~~-~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~--~~v~~l~~spd--~l~sgs~dg~I~v 1047 (1094)
.+.+|...|+++ .|++++ .++++++.|+ +|+|||++++++...+. |. ..|.+++|+|+ .+++++.|++|++
T Consensus 303 ~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~-tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~l 381 (524)
T 2j04_B 303 YDQVHDSYILSVSTAYSDFEDTVVSTVAVDG-YFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRA 381 (524)
T ss_dssp EEECSSSCEEEEEEECCTTSCCEEEEEETTS-EEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEE
T ss_pred EeecccccEEEEEEEcCCCCCeEEEEeccCC-eEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEE
Confidence 467899999999 467877 8999999997 99999999887665554 22 35889999997 7999999999999
Q ss_pred EECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1048 WDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1048 wd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
||++++.++.++ .+|.+.|++++|||+|++|++|+.||+|++||+
T Consensus 382 wd~~~~~~~~~l-~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~ 426 (524)
T 2j04_B 382 VPSRAAFAVHPL-VSRETTITAIGVSRLHPMVLAGSADGSLIITNA 426 (524)
T ss_dssp EETTCTTCCEEE-EECSSCEEEEECCSSCCBCEEEETTTEEECCBS
T ss_pred EECcccccceee-ecCCCceEEEEeCCCCCeEEEEECCCEEEEEec
Confidence 999999988888 489999999999999999999999999999986
No 96
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=7.4e-27 Score=266.92 Aligned_cols=262 Identities=9% Similarity=0.057 Sum_probs=201.1
Q ss_pred cccccCcEEEEeeCCCCeEEEeCCcceeecccCCCcEEEEEEeCCEEEEEECCCeEEEEecC---------CCcceeEEE
Q 001349 780 PLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGR---------GSILHLIQQ 850 (1094)
Q Consensus 780 ~~~~d~~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~---------t~~~~~~~~ 850 (1094)
.+..++..+++|+.||+|++||............+.|.++.|+|+ +++|+.|++|++|+.. ++ ..+..
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~~~--~~~~~ 119 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPA-IISRGPCNRLLLLYPGNQITILDSKTN--KVLRE 119 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCS-EEEECSTTEEEEEETTTEEEEEETTTC--CEEEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCc-eEEecCCCeEEEEEccCceEEeecCCc--ceeEE
Confidence 344678899999999999999987432222222567888889999 9999999999999766 33 33444
Q ss_pred ec-ccCCCeEEEEEec--CCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCC
Q 001349 851 IR-EHTKAVTGLAILQ--SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNG 927 (1094)
Q Consensus 851 l~-~H~~~V~sv~fsp--dg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g 927 (1094)
+. +|.+.|.+++|+| +++++++|+.||+|++||+.+++........+...+.++. |+|+|..
T Consensus 120 ~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~-------~~pdg~~-------- 184 (343)
T 3lrv_A 120 IEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGV-------LHKDSLL-------- 184 (343)
T ss_dssp EECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEE-------ECTTSCE--------
T ss_pred eecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEE-------ECCCCCE--------
Confidence 43 6778999999999 9999999999999999999998653333334455677766 7787764
Q ss_pred eEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecC-CCCCeEEEEEeCCccEEEEEECCCCEE
Q 001349 928 KTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLG-KANPVHALQVHNGLVYTASTSLDGAAV 1006 (1094)
Q Consensus 928 ~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~-h~~~V~sl~fs~~~~~las~s~Dg~~I 1006 (1094)
+++|+.||.|++||+++++... ..+.+ |..+|++++|+|++.++++++ ++ .|
T Consensus 185 --------------------lasg~~dg~i~iwd~~~~~~~~-----~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~-~v 237 (343)
T 3lrv_A 185 --------------------LALYSPDGILDVYNLSSPDQAS-----SRFPVDEEAKIKEVKFADNGYWMVVEC-DQ-TV 237 (343)
T ss_dssp --------------------EEEECTTSCEEEEESSCTTSCC-----EECCCCTTSCEEEEEECTTSSEEEEEE-SS-BE
T ss_pred --------------------EEEEcCCCEEEEEECCCCCCCc-----cEEeccCCCCEEEEEEeCCCCEEEEEe-CC-eE
Confidence 7889999999999999988651 23445 899999999999999999998 65 99
Q ss_pred EEEECCCCeEEEEec----CCCCE--EEEEEeCC--EEEEEEc-CCeEEEEECCCCcEEEEecccCCcceEEEEEcC---
Q 001349 1007 KMWSTSNYNMVGSLP----TLSEV--RAMVVSSE--LVYLGCK-GGTVEIWDQKRQIRIETLQTGTSGKVQCMALDD--- 1074 (1094)
Q Consensus 1007 ~iwd~~~~~~~~~~~----~~~~v--~~l~~spd--~l~sgs~-dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Sp--- 1074 (1094)
++||+++++.+..+. +...+ .+++|+|+ ++++++. |+.|+||++.+....... ..+..++|++
T Consensus 238 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~-----~~~~~~~~~~~~~ 312 (343)
T 3lrv_A 238 VCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK-----DEESALCLQSDTA 312 (343)
T ss_dssp EEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE-----EEEEECCC----C
T ss_pred EEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe-----cCceeEecCcccc
Confidence 999999887655443 12223 46999998 8899888 999999999766543332 4677888888
Q ss_pred CCCEEEEEeCCCcEEEE
Q 001349 1075 NEEFLVIGTSDGRIQAW 1091 (1094)
Q Consensus 1075 dg~~L~sgs~DG~I~iW 1091 (1094)
++..+++++.||.+.+|
T Consensus 313 ~~~~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 313 DFTDMDVVCGDGGIAAI 329 (343)
T ss_dssp CCCEEEEEEETTEEEEE
T ss_pred ccceeEEEecCCceEEE
Confidence 88899999999988876
No 97
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=9.2e-27 Score=294.89 Aligned_cols=248 Identities=16% Similarity=0.202 Sum_probs=204.0
Q ss_pred eeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecC--CCEEEEEeCCCcEEE
Q 001349 806 VHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS--GEMLYSGSLDKTARV 881 (1094)
Q Consensus 806 ~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspd--g~~LaSgs~DgtI~v 881 (1094)
..++.+|.+.|++++|+|+ +|++|+.||+|+|||+.++....+..+.+|.+.|++++|+|+ +++|++|+.||+|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 3567899999999999986 899999999999999986555788899999999999999987 999999999999999
Q ss_pred EECCCCceEEE-EecccCccceeeeecCceEEEeeC--CCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEE
Q 001349 882 WSIGNEEIHCV-QVHDIKDQIQNLAVSNSILCFIPQ--GAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQ 958 (1094)
Q Consensus 882 Wdi~~~~~~~~-~~~~~~~~V~~v~~~~~~~~fspd--g~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~ 958 (1094)
||+.++..... ....+...|.++. |+|+ |. .+++|+.||.|+
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~-------~sp~~~~~----------------------------~l~sgs~dg~I~ 126 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQ-------WAPHEYGP----------------------------LLLVASSDGKVS 126 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEE-------ECCGGGCS----------------------------EEEEEETTSEEE
T ss_pred EECCCCcccccccccCCCCCeEEEE-------ECCCCCCC----------------------------EEEEEeCCCcEE
Confidence 99998753333 3334667777776 6776 54 488999999999
Q ss_pred EEECCCCceeEEeccceeecCCCCCeEEEEEeC-------------CccEEEEEECCCCEEEEEECCCC----eEEEEec
Q 001349 959 EIDLATGTFATIQTGHRKLLGKANPVHALQVHN-------------GLVYTASTSLDGAAVKMWSTSNY----NMVGSLP 1021 (1094)
Q Consensus 959 iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~-------------~~~~las~s~Dg~~I~iwd~~~~----~~~~~~~ 1021 (1094)
+||++++..... ..+.+|...|.++.|+| ++.++++++.|| .|++||++++ .....+.
T Consensus 127 vwdl~~~~~~~~----~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg-~I~iwd~~~~~~~~~~~~~~~ 201 (753)
T 3jro_A 127 VVEFKENGTTSP----IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN-LVKIWKYNSDAQTYVLESTLE 201 (753)
T ss_dssp EEECCSSSCCCC----EEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTS-CEEEEEEETTTTEEEEEEEEC
T ss_pred EEEeecCCCcce----eEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCC-eEEEEeccCCcccceeeeeec
Confidence 999998754321 35568899999999999 588999999997 9999999876 4555555
Q ss_pred -CCCCEEEEEEeCC-----EEEEEEcCCeEEEEECCCCc-----EEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEE
Q 001349 1022 -TLSEVRAMVVSSE-----LVYLGCKGGTVEIWDQKRQI-----RIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQA 1090 (1094)
Q Consensus 1022 -~~~~v~~l~~spd-----~l~sgs~dg~I~vwd~~t~~-----~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~i 1090 (1094)
|...|.+++|+|+ ++++|+.||.|++||+.++. ..... .+|.+.|++++|+|+|++|++|+.||.|++
T Consensus 202 ~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~-~~~~~~v~~l~~spdg~~l~s~s~Dg~I~v 280 (753)
T 3jro_A 202 GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKE-EKFPDVLWRASWSLSGNVLALSGGDNKVTL 280 (753)
T ss_dssp CCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSS-SCCSSCCCCEEECTTTCCEEEECSSSCEEC
T ss_pred CCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEecc-CCCCCceEEEEEcCCCCEEEEEcCCCEEEE
Confidence 7889999999986 69999999999999998864 22222 358889999999999999999999999999
Q ss_pred EeCC
Q 001349 1091 WGLS 1094 (1094)
Q Consensus 1091 Wdls 1094 (1094)
|++.
T Consensus 281 wd~~ 284 (753)
T 3jro_A 281 WKEN 284 (753)
T ss_dssp CBCC
T ss_pred EecC
Confidence 9974
No 98
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.95 E-value=1.9e-25 Score=264.00 Aligned_cols=234 Identities=26% Similarity=0.433 Sum_probs=203.2
Q ss_pred cccCCCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 001349 809 DSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE 888 (1094)
Q Consensus 809 ~~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~ 888 (1094)
..+|...|+++.|.++++++|+.||+|++||+.++ +.+..+.+|.+.|++++| ++++|++|+.||+|++||+.+++
T Consensus 129 ~~~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~ 204 (435)
T 1p22_A 129 RSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTL--ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE 204 (435)
T ss_dssp CCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSC--CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC
T ss_pred ccCCCCcEEEEEECCCEEEEEeCCCeEEEEeCCCC--eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCc
Confidence 34678899999998889999999999999999998 788999999999999998 78999999999999999999874
Q ss_pred eEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCcee
Q 001349 889 IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFA 968 (1094)
Q Consensus 889 ~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~ 968 (1094)
... ... .+...|.++.++++.+++|+.||.|++||+.++...
T Consensus 205 ~~~-~~~-------------------------------------~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~ 246 (435)
T 1p22_A 205 MLN-TLI-------------------------------------HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDI 246 (435)
T ss_dssp EEE-EEC-------------------------------------CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCC
T ss_pred EEE-EEc-------------------------------------CCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCc
Confidence 211 111 123445666666778999999999999999987754
Q ss_pred EEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCCEEEEEEcCCeEEE
Q 001349 969 TIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSELVYLGCKGGTVEI 1047 (1094)
Q Consensus 969 ~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd~l~sgs~dg~I~v 1047 (1094)
... ..+.+|...|.++.| ++.++++++.|| .|++||+++++.+..+. |...+.++.++++++++|+.||.|++
T Consensus 247 ~~~---~~~~~~~~~v~~~~~--~~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~i 320 (435)
T 1p22_A 247 TLR---RVLVGHRAAVNVVDF--DDKYIVSASGDR-TIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRL 320 (435)
T ss_dssp EEE---EEECCCSSCEEEEEE--ETTEEEEEETTS-EEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEE
T ss_pred eee---eEecCCCCcEEEEEe--CCCEEEEEeCCC-eEEEEECCcCcEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEE
Confidence 221 356789999999999 567889999886 99999999999999988 77889999999999999999999999
Q ss_pred EECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1048 WDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1048 wd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
||+.+++++..+ .+|...|++++| ++.+|++|+.||+|++||+
T Consensus 321 wd~~~~~~~~~~-~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 321 WDIECGACLRVL-EGHEELVRCIRF--DNKRIVSGAYDGKIKVWDL 363 (435)
T ss_dssp EETTTCCEEEEE-CCCSSCEEEEEC--CSSEEEEEETTSCEEEEEH
T ss_pred EECCCCCEEEEE-eCCcCcEEEEEe--cCCEEEEEeCCCcEEEEEC
Confidence 999999999999 589999999999 7899999999999999996
No 99
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.95 E-value=3.6e-26 Score=269.94 Aligned_cols=246 Identities=16% Similarity=0.180 Sum_probs=200.2
Q ss_pred eecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCC--------CcceeEEEecccCCCeEEEEEecCCC-EEEEEe
Q 001349 807 HVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRG--------SILHLIQQIREHTKAVTGLAILQSGE-MLYSGS 874 (1094)
Q Consensus 807 ~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t--------~~~~~~~~l~~H~~~V~sv~fspdg~-~LaSgs 874 (1094)
.....|.+.|++++|+|+ +|++|+.||.|++||+.+ +....+..+.+|...|++++|+|++. +|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 345679999999999995 899999999999999986 22367788899999999999999988 999999
Q ss_pred CCCcEEEEECCCCce--E----EEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEE
Q 001349 875 LDKTARVWSIGNEEI--H----CVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKV 948 (1094)
Q Consensus 875 ~DgtI~vWdi~~~~~--~----~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l 948 (1094)
.||+|++||+.++.. . ......+...|.++. |+|++. ..+
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~-------~~p~~~---------------------------~~l 247 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA-------WHLLHE---------------------------SLF 247 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEE-------ECSSCT---------------------------TEE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeE-------EeCCCC---------------------------CEE
Confidence 999999999987421 0 011112333344443 333221 258
Q ss_pred EEEEcCCeEEEEECCCCc---eeEEeccceeecCCCCCeEEEEEeCCcc-EEEEEECCCCEEEEEECCC-CeEEEEec-C
Q 001349 949 YCGCQDGAIQEIDLATGT---FATIQTGHRKLLGKANPVHALQVHNGLV-YTASTSLDGAAVKMWSTSN-YNMVGSLP-T 1022 (1094)
Q Consensus 949 ~sgs~Dg~I~iwDl~~~~---~~~~~~~~~~~~~h~~~V~sl~fs~~~~-~las~s~Dg~~I~iwd~~~-~~~~~~~~-~ 1022 (1094)
++++.||.|++||++++. .. ..+..|...|++++|+|++. ++++++.|| .|++||+++ +.++..+. |
T Consensus 248 ~s~~~dg~i~i~d~~~~~~~~~~------~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg-~v~vwd~~~~~~~~~~~~~h 320 (430)
T 2xyi_A 248 GSVADDQKLMIWDTRNNNTSKPS------HTVDAHTAEVNCLSFNPYSEFILATGSADK-TVALWDLRNLKLKLHSFESH 320 (430)
T ss_dssp EEEETTSEEEEEETTCSCSSSCS------EEEECCSSCEEEEEECSSCTTEEEEEETTS-EEEEEETTCTTSCSEEEECC
T ss_pred EEEeCCCeEEEEECCCCCCCcce------eEeecCCCCeEEEEeCCCCCCEEEEEeCCC-eEEEEeCCCCCCCeEEeecC
Confidence 899999999999999873 33 34568899999999999876 688888886 999999997 56677776 7
Q ss_pred CCCEEEEEEeCC---EEEEEEcCCeEEEEECCC--------------CcEEEEecccCCcceEEEEEcCCCC-EEEEEeC
Q 001349 1023 LSEVRAMVVSSE---LVYLGCKGGTVEIWDQKR--------------QIRIETLQTGTSGKVQCMALDDNEE-FLVIGTS 1084 (1094)
Q Consensus 1023 ~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t--------------~~~~~~l~~~h~~~I~~l~~Spdg~-~L~sgs~ 1084 (1094)
...|.+++|+|+ ++++++.||.|+|||+.. .+.+..+ .+|.+.|++++|+|+++ +|++++.
T Consensus 321 ~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~l~s~s~ 399 (430)
T 2xyi_A 321 KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH-GGHTAKISDFSWNPNEPWIICSVSE 399 (430)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEEC-CCCSSCEEEEEECSSSTTEEEEEET
T ss_pred CCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEc-CCCCCCceEEEECCCCCCEEEEEEC
Confidence 889999999997 699999999999999987 3566666 58999999999999999 9999999
Q ss_pred CCcEEEEeCC
Q 001349 1085 DGRIQAWGLS 1094 (1094)
Q Consensus 1085 DG~I~iWdls 1094 (1094)
||.|++|++.
T Consensus 400 dg~i~iw~~~ 409 (430)
T 2xyi_A 400 DNIMQVWQMA 409 (430)
T ss_dssp TSEEEEEEEC
T ss_pred CCCEEEeEcc
Confidence 9999999974
No 100
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.95 E-value=1.7e-25 Score=259.70 Aligned_cols=305 Identities=12% Similarity=0.118 Sum_probs=208.9
Q ss_pred hhhccccccccc-cCcEEEEeeCCCCeEEEeCCcc--eeec-------------ccCCCcEEEEEEeC-C--EEEEEECC
Q 001349 772 LRELRKYSPLAF-EMVKVLSNGHDSSADFWNHREL--VHVD-------------SSENGKVLSIACFR-D--KIFSGHSD 832 (1094)
Q Consensus 772 ~~~~~~~~~~~~-d~~~l~s~s~dg~I~vWd~~~~--~~~~-------------~~h~~~V~~l~fsp-d--~LaSgs~D 832 (1094)
|...+....+.+ ++.++++++.||.|++||.... .... .+|.+.|.+++|+| + +|++++.|
T Consensus 42 h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 121 (408)
T 4a11_B 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFD 121 (408)
T ss_dssp CSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETT
T ss_pred cCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCC
Confidence 334445566777 8999999999999999998731 1111 35999999999998 4 89999999
Q ss_pred CeEEEEecCCCcceeEEEecccCCCeEEEEEecC---CCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCc
Q 001349 833 GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS---GEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNS 909 (1094)
Q Consensus 833 g~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspd---g~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~ 909 (1094)
|.|++||+.++ ..+..+. |...+.++.|++. +.++++++.||.|++||+.+++.. .....+...|.++.
T Consensus 122 ~~i~iwd~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~v~~~~---- 193 (408)
T 4a11_B 122 KTLKVWDTNTL--QTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS-HILQGHRQEILAVS---- 193 (408)
T ss_dssp SEEEEEETTTT--EEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCC-EEECCCCSCEEEEE----
T ss_pred CeEEEeeCCCC--ccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCccee-eeecCCCCcEEEEE----
Confidence 99999999998 5666664 7889999999984 459999999999999999987632 22334677888888
Q ss_pred eEEEeeCCCe-EEEEEeCCeEEEEcC----------------------------CCCceEEEEeC--CEEEEEEcCCeEE
Q 001349 910 ILCFIPQGAG-IKVHLRNGKTKLLNS----------------------------SKYPKCLALVQ--GKVYCGCQDGAIQ 958 (1094)
Q Consensus 910 ~~~fspdg~~-l~~~~~~g~i~l~~~----------------------------~~~v~~l~~s~--~~l~sgs~Dg~I~ 958 (1094)
|+|++.. +++++.+|.+++|+. ...|.++.|++ ..+++++.||.|+
T Consensus 194 ---~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 270 (408)
T 4a11_B 194 ---WSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMR 270 (408)
T ss_dssp ---ECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred ---ECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEE
Confidence 9999995 889999999999974 24588999986 4699999999999
Q ss_pred EEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--E
Q 001349 959 EIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--L 1035 (1094)
Q Consensus 959 iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~ 1035 (1094)
+||+.++............................. ++.++.++ .|++||+.+++.+..+. |...|.+++|+|+ +
T Consensus 271 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 348 (408)
T 4a11_B 271 LWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSE-FVFVPYGS-TIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQE 348 (408)
T ss_dssp EEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSC-EEEEEETT-EEEEEETTTCCEEEEECCCSSCEEEEEEETTTTE
T ss_pred EEECCCCccceeccccccccccccceeEEecCCCce-EEEEecCC-EEEEEECcCCcceeeeccCCCeEEEEEEcCCCCE
Confidence 999999876543322111111111122222233344 44445565 99999999999999998 7789999999998 8
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcC-CCCEEEEEeCCCcEEEEeC
Q 001349 1036 VYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDD-NEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1036 l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Sp-dg~~L~sgs~DG~I~iWdl 1093 (1094)
+++|+.||.|++||+.+++.+.... .+. ....+.+ +...+.+++.||.+++|+.
T Consensus 349 l~s~~~dg~i~iw~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~W~~ 403 (408)
T 4a11_B 349 LYSGSRDCNILAWVPSLYEPVPDDD-ETT---TKSQLNPAFEDAWSSSDEEGGTSAWSH 403 (408)
T ss_dssp EEEEETTSCEEEEEECC------------------------------------------
T ss_pred EEEECCCCeEEEEeCCCCCccCCCC-ceE---eccccccccceeecccCccCceeecCC
Confidence 9999999999999999998876653 221 1122333 3345567778999999975
No 101
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=3.4e-26 Score=266.93 Aligned_cols=273 Identities=12% Similarity=0.118 Sum_probs=187.6
Q ss_pred cccCcEEEEeeCCCCeEEEeCCcc-----------eeecccCCCcEEEEEEeC--------------------C--EEEE
Q 001349 782 AFEMVKVLSNGHDSSADFWNHREL-----------VHVDSSENGKVLSIACFR--------------------D--KIFS 828 (1094)
Q Consensus 782 ~~d~~~l~s~s~dg~I~vWd~~~~-----------~~~~~~h~~~V~~l~fsp--------------------d--~LaS 828 (1094)
.++...++..+.++.|.+|+.... ......|...+..+.|++ + ++++
T Consensus 27 ~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las 106 (393)
T 4gq1_A 27 SPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNSSPVYSLFLAC 106 (393)
T ss_dssp SGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------CCEEEEEEEE
T ss_pred CCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceeecCCCCCEEEE
Confidence 344445666667888999975410 011122344555555442 2 7999
Q ss_pred EECCCeEEEEecCCCcce---eEEEecccCCCeEEEEEec--------CCCEEEEEeCCCcEEEEECCCCceEEEEeccc
Q 001349 829 GHSDGTIKVWTGRGSILH---LIQQIREHTKAVTGLAILQ--------SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDI 897 (1094)
Q Consensus 829 gs~Dg~I~vWd~~t~~~~---~~~~l~~H~~~V~sv~fsp--------dg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~ 897 (1094)
|+.|++|++||..++... .+..+.+|.+.|++++|+| ||++|+|||.|++|+|||+.++. .......+
T Consensus 107 ~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~-~~~~~~~~ 185 (393)
T 4gq1_A 107 VCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG-PILAGYPL 185 (393)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE-EEEEEEEC
T ss_pred EeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc-eeeeecCC
Confidence 999999999999987322 2344689999999999998 88999999999999999998764 33444455
Q ss_pred CccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccc---
Q 001349 898 KDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGH--- 974 (1094)
Q Consensus 898 ~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~--- 974 (1094)
..++.+++ |+|++.. .+++|+.||+|++||+++++........
T Consensus 186 ~~~v~~v~-------~~p~~~~---------------------------~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~ 231 (393)
T 4gq1_A 186 SSPGISVQ-------FRPSNPN---------------------------QLIVGERNGNIRIFDWTLNLSAEENSQTELV 231 (393)
T ss_dssp SSCEEEEE-------EETTEEE---------------------------EEEEEETTSEEEEEETTCCC----------C
T ss_pred CCCcEEEE-------ECCCCCc---------------------------eEEecCCCCEEEEEECCCCcccccccccCCc
Confidence 66777776 7776643 3888999999999999887654322110
Q ss_pred ----------------eeecCCCCCeEEEEEe-CCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEE--------
Q 001349 975 ----------------RKLLGKANPVHALQVH-NGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRA-------- 1028 (1094)
Q Consensus 975 ----------------~~~~~h~~~V~sl~fs-~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~-------- 1028 (1094)
....+|...+.++.|+ +++..+++++.|+ ++++||+..+.....+. +...+..
T Consensus 232 ~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~-~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~ 310 (393)
T 4gq1_A 232 KNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSG-AWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQ 310 (393)
T ss_dssp SCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTS-EEEEEEC-------------------CCSCSEE
T ss_pred ccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCC-CEEEEECccCCCCceEeeecCccccEEEccccc
Confidence 1234688889999997 7999999999886 99999998776555443 2222222
Q ss_pred ----------EEEeCC----EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1029 ----------MVVSSE----LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1029 ----------l~~spd----~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
..+++. ++++|+.||+|++||+.+++....+ .+|...|++++|||||++|++++.|| +.+|.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~-~~~~~~V~svafspdG~~LA~as~~G-v~lvr 386 (393)
T 4gq1_A 311 GISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIP-IQLGMPIVDFCWHQDGSHLAIATEGS-VLLTR 386 (393)
T ss_dssp EECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEE-EECSSCEEEEEECTTSSEEEEEESSE-EEEEE
T ss_pred cccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEe-cCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEE
Confidence 233332 5777889999999999999988877 47888999999999999999999777 44554
No 102
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.94 E-value=2.6e-25 Score=255.66 Aligned_cols=272 Identities=12% Similarity=0.152 Sum_probs=199.7
Q ss_pred cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEE-EEEeCCCcEE
Q 001349 804 ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEML-YSGSLDKTAR 880 (1094)
Q Consensus 804 ~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~L-aSgs~DgtI~ 880 (1094)
..+.....|.+.|++++|+|| +|++|+.|| ++|||..++ ...... +...+..+.+.++++.+ ++++.|++|+
T Consensus 10 ~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~v~ 84 (355)
T 3vu4_A 10 NPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPV--AHIMSQ--EMRHLSKVRMLHRTNYVAFVTGVKEVVH 84 (355)
T ss_dssp ---------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTE--EEEEEE--ECSCCCEEEECTTSSEEEEECSSTTEEE
T ss_pred CCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCc--ceeeee--ecCCeEEEEEcCCCCEEEEEECCccEEE
Confidence 344456789999999999997 888887765 789999877 444333 22358888999988877 5677889999
Q ss_pred EEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCC----------ceEEEEeCCEEEE
Q 001349 881 VWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKY----------PKCLALVQGKVYC 950 (1094)
Q Consensus 881 vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~----------v~~l~~s~~~l~s 950 (1094)
+||+.+++. +....+...|.++. |++++ +++ ..++.+++|+.... ...+.++++.+++
T Consensus 85 iWd~~~~~~--~~~~~~~~~v~~v~-------~~~~~--~~~-~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~ 152 (355)
T 3vu4_A 85 IWDDVKKQD--VSRIKVDAPVKDLF-------LSREF--IVV-SYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVY 152 (355)
T ss_dssp EEETTTTEE--EEEEECSSCEEEEE-------ECSSE--EEE-EETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEE
T ss_pred EEECCCCcE--EEEEECCCceEEEE-------EcCCE--EEE-EEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEE
Confidence 999999853 33344567888877 55443 222 34788999987544 2234455567666
Q ss_pred --EEcCCeEEEEECCCCceeEE---------ecc-ceeecCCCCCeEEEEEeCCccEEEEEECCCCE-EEEEECCCCeEE
Q 001349 951 --GCQDGAIQEIDLATGTFATI---------QTG-HRKLLGKANPVHALQVHNGLVYTASTSLDGAA-VKMWSTSNYNMV 1017 (1094)
Q Consensus 951 --gs~Dg~I~iwDl~~~~~~~~---------~~~-~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~-I~iwd~~~~~~~ 1017 (1094)
|+.||.|++||+.++..... ... ...+.+|...|++++|+|++.++++++.|+ + |++||+++++++
T Consensus 153 ~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~-~~v~iwd~~~~~~~ 231 (355)
T 3vu4_A 153 SNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDG-TIIRVFKTEDGVLV 231 (355)
T ss_dssp EESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTC-SEEEEEETTTCCEE
T ss_pred eCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCC-CEEEEEECCCCcEE
Confidence 58999999999998651100 000 256789999999999999999999999997 7 999999999999
Q ss_pred EEec---CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcE--EEE--------------------ecccCCcceEEE
Q 001349 1018 GSLP---TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIR--IET--------------------LQTGTSGKVQCM 1070 (1094)
Q Consensus 1018 ~~~~---~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~--~~~--------------------l~~~h~~~I~~l 1070 (1094)
..+. |...|.+++|+|+ ++++|+.|++|++||+..+.. ... +...+......+
T Consensus 232 ~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (355)
T 3vu4_A 232 REFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKI 311 (355)
T ss_dssp EEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEE
T ss_pred EEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEE
Confidence 9997 7889999999998 899999999999999976531 111 111122234779
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1071 ALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1071 ~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
+|++||++|++++.||++++|++
T Consensus 312 a~~~d~~~l~~~~~dg~~~~~~~ 334 (355)
T 3vu4_A 312 AWISESSLVVVWPHTRMIETFKV 334 (355)
T ss_dssp EESSSSEEEEEETTTTEEEEEEE
T ss_pred EEeCCCCEEEEEeCCCeEEEEEE
Confidence 99999999999999999999986
No 103
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.1e-25 Score=258.69 Aligned_cols=257 Identities=15% Similarity=0.167 Sum_probs=202.2
Q ss_pred HhhhccccccccccCcEEEEeeCCCCeEEEeCC----cceeecccCCCcEEEEEEeC----CEEEEEECCCeEEEEecCC
Q 001349 771 GLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR----ELVHVDSSENGKVLSIACFR----DKIFSGHSDGTIKVWTGRG 842 (1094)
Q Consensus 771 ~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~----~~~~~~~~h~~~V~~l~fsp----d~LaSgs~Dg~I~vWd~~t 842 (1094)
+|...+....+.+++.++++++.||.|++|+.. .....+.+|.+.|++++|++ ++|++|+.||+|++||+.+
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 88 (379)
T 3jrp_A 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN 88 (379)
T ss_dssp ECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEET
T ss_pred CCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCC
Confidence 344555667788899999999999999999986 34567789999999999984 4999999999999999999
Q ss_pred CcceeEEEecccCCCeEEEEEecC--CCEEEEEeCCCcEEEEECCCCc-eEEEEecccCccceeeeecCceEEEeeCCCe
Q 001349 843 SILHLIQQIREHTKAVTGLAILQS--GEMLYSGSLDKTARVWSIGNEE-IHCVQVHDIKDQIQNLAVSNSILCFIPQGAG 919 (1094)
Q Consensus 843 ~~~~~~~~l~~H~~~V~sv~fspd--g~~LaSgs~DgtI~vWdi~~~~-~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~ 919 (1094)
+....+..+.+|...|++++|+|+ +.+|++++.||+|++||+.++. ........+...|.++. |+|....
T Consensus 89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~~ 161 (379)
T 3jrp_A 89 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS-------WAPATIE 161 (379)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEE-------ECCCC--
T ss_pred CceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEE-------EcCcccc
Confidence 855588888999999999999999 9999999999999999999874 23334445667777777 5553211
Q ss_pred EEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCC---ccEE
Q 001349 920 IKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG---LVYT 996 (1094)
Q Consensus 920 l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~---~~~l 996 (1094)
..... .....+..+++|+.||.|++||++++....... ..+.+|...|++++|+|+ +.++
T Consensus 162 ~~~~~---------------~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~h~~~v~~~~~sp~~~~~~~l 224 (379)
T 3jrp_A 162 EDGEH---------------NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE--STLEGHSDWVRDVAWSPTVLLRSYL 224 (379)
T ss_dssp -----------------------CTTCEEEEEETTSCEEEEEEETTTTEEEEE--EEECCCSSCEEEEEECCCCSSSEEE
T ss_pred ccccc---------------cCCCCCCEEEEEeCCCeEEEEEecCCCcceeeE--EEEecccCcEeEEEECCCCCCCCeE
Confidence 00000 000012358999999999999998776432222 467789999999999999 8999
Q ss_pred EEEECCCCEEEEEECCCCe---EEEEec---CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCC
Q 001349 997 ASTSLDGAAVKMWSTSNYN---MVGSLP---TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKR 1052 (1094)
Q Consensus 997 as~s~Dg~~I~iwd~~~~~---~~~~~~---~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t 1052 (1094)
++++.|| .|++||+.++. ....+. +...|.+++|+|+ ++++++.||.|++||+..
T Consensus 225 ~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 225 ASVSQDR-TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp EEEETTS-CEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred EEEeCCC-EEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 9999997 99999998863 222222 6788999999998 899999999999999874
No 104
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.94 E-value=1.5e-25 Score=253.01 Aligned_cols=259 Identities=14% Similarity=0.196 Sum_probs=202.3
Q ss_pred HhhhccccccccccCcEEEEeeCCCCeEEEeCCc------ceeecccCCCcEEEEEEeC---C-EEEEEECCCeEEEEec
Q 001349 771 GLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRE------LVHVDSSENGKVLSIACFR---D-KIFSGHSDGTIKVWTG 840 (1094)
Q Consensus 771 ~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~------~~~~~~~h~~~V~~l~fsp---d-~LaSgs~Dg~I~vWd~ 840 (1094)
+|...+....+.+++.+|++++.||.|++||... ....+.+|.+.|++++|+| . +|++|+.||+|++||+
T Consensus 9 gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~ 88 (351)
T 3f3f_A 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEE 88 (351)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEE
T ss_pred ccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEec
Confidence 3445566677888999999999999999999872 4556678999999999997 2 9999999999999999
Q ss_pred CCCcc-------eeEEEecccCCCeEEEEEecC--CCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceE
Q 001349 841 RGSIL-------HLIQQIREHTKAVTGLAILQS--GEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSIL 911 (1094)
Q Consensus 841 ~t~~~-------~~~~~l~~H~~~V~sv~fspd--g~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~ 911 (1094)
.++.. ..+..+.+|.+.|++++|+|+ +++|++++.||+|++||+.+++.... ......+..+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~--~~~~~~~~~~~------ 160 (351)
T 3f3f_A 89 DPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRS--WTLTSEMKVLS------ 160 (351)
T ss_dssp CTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTC--CEEEEEEESCS------
T ss_pred CCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcc--ccccccccccc------
Confidence 87632 457888899999999999999 99999999999999999988641100 00000000000
Q ss_pred EEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC-----CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEE
Q 001349 912 CFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ-----GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHA 986 (1094)
Q Consensus 912 ~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~-----~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~s 986 (1094)
+.+. .+...+.++.+++ ..+++++.|+.+.+|+...+..... ..+.+|...|++
T Consensus 161 -~~~~----------------~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~h~~~i~~ 219 (351)
T 3f3f_A 161 -IPPA----------------NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVA----AKLPGHKSLIRS 219 (351)
T ss_dssp -CCCS----------------SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEE----EECCCCCSCEEE
T ss_pred -cccC----------------CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeee----eecCCCCcceeE
Confidence 1111 1234456666643 4699999999998898887765322 456789999999
Q ss_pred EEEeCCc----cEEEEEECCCCEEEEEECCCC----------------------------------------------eE
Q 001349 987 LQVHNGL----VYTASTSLDGAAVKMWSTSNY----------------------------------------------NM 1016 (1094)
Q Consensus 987 l~fs~~~----~~las~s~Dg~~I~iwd~~~~----------------------------------------------~~ 1016 (1094)
++|+|++ .++++++.|| .|++||++++ ..
T Consensus 220 ~~~~p~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (351)
T 3f3f_A 220 ISWAPSIGRWYQLIATGCKDG-RIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVEL 298 (351)
T ss_dssp EEECCCSSCSSEEEEEEETTS-CEEEEEEEECC---------------------------------------CCSEEEEE
T ss_pred EEECCCCCCcceEEEEEcCCC-eEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccE
Confidence 9999998 8999999997 9999999864 45
Q ss_pred EEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEe
Q 001349 1017 VGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETL 1059 (1094)
Q Consensus 1017 ~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l 1059 (1094)
+..+. |...|++++|+|+ ++++|+.||.|++||+.+++.+..+
T Consensus 299 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 299 LSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp EEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred EEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 55555 6788999999998 8999999999999999988765554
No 105
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.5e-26 Score=272.75 Aligned_cols=261 Identities=11% Similarity=0.065 Sum_probs=204.7
Q ss_pred hccccccccccCcEEEEeeCCCCeEEEeCCcceeecccCCCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEecc
Q 001349 774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIRE 853 (1094)
Q Consensus 774 ~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~ 853 (1094)
..+....+++||.++|+++.|++|+ |.... ..+.+|.+.|.+++|+|+- .++++.+|+.... .+..+ .
T Consensus 16 ~~v~sv~~SpDG~~iASas~D~TV~--d~~~~-~~l~gh~~~v~~V~FsPdg-----~~~~~~~~~~~~~---~~~~~-~ 83 (588)
T 2j04_A 16 DWKNNLTWARDGTLYLTTFPDISIG--QPKYA-KDINCNSKNLFHVKEFPLE-----FENKLDFELAQQN---GLLNS-Q 83 (588)
T ss_dssp SSSCCEEECTTSCEEEECSSSEEEE--EECCC-SCCSSBGGGTEEEEEECCC-----CCCTTTTSCCCSS---CSSTT-S
T ss_pred ccEEEEEECCCCCEEEEEcCCceee--ccccc-ceecCCCccEEEEEECCCC-----CcceEEEEeCCCc---eEeec-C
Confidence 3455788999999999999999999 65433 3447999999999999975 4555555554332 22233 5
Q ss_pred cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCc-----cceeeeecCceEEEeeCCCeEEEEEeCCe
Q 001349 854 HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKD-----QIQNLAVSNSILCFIPQGAGIKVHLRNGK 928 (1094)
Q Consensus 854 H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~-----~V~~v~~~~~~~~fspdg~~l~~~~~~g~ 928 (1094)
|...|++++|||||++||+++.||+|++||..+ ++....+.. .+.+++ |+|||+.
T Consensus 84 ~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~----~l~~l~~~~~~~~~sv~sva-------fSPDG~~--------- 143 (588)
T 2j04_A 84 PVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK----MLTNLDSKGNLSSRTYHCFE-------WNPIESS--------- 143 (588)
T ss_dssp CSCCEEEEEECSSSSCEEEEETTSCEEEEETTE----EEEECCCSSCSTTTCEEEEE-------ECSSSSC---------
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc----eeeeccCCCccccccEEEEE-------EcCCCCE---------
Confidence 688999999999999999999999999999544 222222333 377766 8999985
Q ss_pred EEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCce-------eEEeccceeecCCCCCeEEEEEeCCccEEEEEEC
Q 001349 929 TKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTF-------ATIQTGHRKLLGKANPVHALQVHNGLVYTASTSL 1001 (1094)
Q Consensus 929 i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~-------~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~ 1001 (1094)
|++|+.||+|++||+.++.. +..+. ....+|...|.+++|+|++ +++++.
T Consensus 144 -------------------LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~--~~~~gh~~~V~sVawSPdg--Laass~ 200 (588)
T 2j04_A 144 -------------------IVVGNEDGELQFFSIRKNSENTPEFYFESSIR--LSDAGSKDWVTHIVWYEDV--LVAALS 200 (588)
T ss_dssp -------------------EEEEETTSEEEEEECCCCTTTCCCCEEEEEEE--CSCTTCCCCEEEEEEETTE--EEEEET
T ss_pred -------------------EEEEcCCCEEEEEECCCCccccccceeeeeee--cccccccccEEEEEEcCCc--EEEEeC
Confidence 88999999999999998753 22111 1136788999999999999 667777
Q ss_pred CCCEEEEEECCCCeE---EEEec--CCCCEEEEEEeCCEEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEE--cC
Q 001349 1002 DGAAVKMWSTSNYNM---VGSLP--TLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMAL--DD 1074 (1094)
Q Consensus 1002 Dg~~I~iwd~~~~~~---~~~~~--~~~~v~~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~--Sp 1074 (1094)
|+ +|++||+.++.. .+++. |...|.+++|+...+++++ +++|++||+.+++..... .+|.+.|++++| +|
T Consensus 201 D~-tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~~~~~~~~~-~gh~~~V~~va~~~s~ 277 (588)
T 2j04_A 201 NN-SVFSMTVSASSHQPVSRMIQNASRRKITDLKIVDYKVVLTC-PGYVHKIDLKNYSISSLK-TGSLENFHIIPLNHEK 277 (588)
T ss_dssp TC-CEEEECCCSSSSCCCEEEEECCCSSCCCCEEEETTEEEEEC-SSEEEEEETTTTEEEEEE-CSCCSCCCEEEETTCS
T ss_pred CC-eEEEEECCCCccccceeeecccccCcEEEEEEECCEEEEEe-CCeEEEEECCCCeEEEEE-cCCCceEEEEEeeeCC
Confidence 75 999999988773 35563 5678999999955888887 699999999988774444 379999999999 99
Q ss_pred CCCEEEEEeCCCcEEEEeC
Q 001349 1075 NEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1075 dg~~L~sgs~DG~I~iWdl 1093 (1094)
|+..|++++.||+ ++|.+
T Consensus 278 d~~~La~a~edG~-klw~~ 295 (588)
T 2j04_A 278 ESTILLMSNKTSY-KVLLE 295 (588)
T ss_dssp SCEEEEECSSCEE-EEEES
T ss_pred CCCEEEEEcCCCC-EEEee
Confidence 9999999999999 99986
No 106
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.94 E-value=5.4e-25 Score=257.15 Aligned_cols=253 Identities=17% Similarity=0.190 Sum_probs=196.4
Q ss_pred ccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEec
Q 001349 775 LRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIR 852 (1094)
Q Consensus 775 ~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~ 852 (1094)
.+....+.+++.++++|+.||.|++||.. .....+.+|.+.|.+++|+++++++|+.||+|++||+.... ..+..+.
T Consensus 136 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~ 214 (401)
T 4aez_A 136 YVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIAN-HQIGTLQ 214 (401)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSS-CEEEEEE
T ss_pred CEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCc-ceeeEEc
Confidence 34456677899999999999999999987 45677789999999999999999999999999999998542 5778889
Q ss_pred ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEE
Q 001349 853 EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLL 932 (1094)
Q Consensus 853 ~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~ 932 (1094)
+|.+.|.+++|+|++++|++|+.||+|++||+.+++. ......+...|.++. |+|++..
T Consensus 215 ~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~v~~~~-------~~p~~~~------------- 273 (401)
T 4aez_A 215 GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIP-KFTKTNHNAAVKAVA-------WCPWQSN------------- 273 (401)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSE-EEEECCCSSCCCEEE-------ECTTSTT-------------
T ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCc-cEEecCCcceEEEEE-------ECCCCCC-------------
Confidence 9999999999999999999999999999999998752 223334566777776 7776654
Q ss_pred cCCCCceEEEEeCCEEEEEE--cCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEE--CCCCEEEE
Q 001349 933 NSSKYPKCLALVQGKVYCGC--QDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTS--LDGAAVKM 1008 (1094)
Q Consensus 933 ~~~~~v~~l~~s~~~l~sgs--~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s--~Dg~~I~i 1008 (1094)
.+++|+ .||.|++||+.+++....+ .+...|.+++|++++.++++++ .|| .|++
T Consensus 274 --------------ll~~~~gs~d~~i~i~d~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~g~~dg-~i~v 331 (401)
T 4aez_A 274 --------------LLATGGGTMDKQIHFWNAATGARVNTV-------DAGSQVTSLIWSPHSKEIMSTHGFPDN-NLSI 331 (401)
T ss_dssp --------------EEEEECCTTTCEEEEEETTTCCEEEEE-------ECSSCEEEEEECSSSSEEEEEECTTTC-EEEE
T ss_pred --------------EEEEecCCCCCEEEEEECCCCCEEEEE-------eCCCcEEEEEECCCCCeEEEEeecCCC-cEEE
Confidence 255554 7999999999999877433 2457899999999999998854 665 9999
Q ss_pred EECCCCeEEEEe--c-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEE
Q 001349 1009 WSTSNYNMVGSL--P-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMA 1071 (1094)
Q Consensus 1009 wd~~~~~~~~~~--~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~ 1071 (1094)
||+.++...... . |...|.+++|+|+ ++++|+.||.|++||+.+++.+......+......+.
T Consensus 332 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~i~ 399 (401)
T 4aez_A 332 WSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPIPITKTPSSSIT 399 (401)
T ss_dssp EEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-------------------
T ss_pred EecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccccccccCCCcccee
Confidence 999987665543 3 7788999999998 8999999999999999999877665333333444443
No 107
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.94 E-value=3e-24 Score=252.64 Aligned_cols=275 Identities=12% Similarity=0.127 Sum_probs=216.3
Q ss_pred ccccccCcEEEEeeCCCCeEEEeCCc--cee-----ecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEE
Q 001349 779 SPLAFEMVKVLSNGHDSSADFWNHRE--LVH-----VDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQ 849 (1094)
Q Consensus 779 ~~~~~d~~~l~s~s~dg~I~vWd~~~--~~~-----~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~ 849 (1094)
..+.+++..+++++.++.|++||..+ ... .+.+|.+.|.+++|+++ ++++++.||.|++||+.++ +.+.
T Consensus 128 ~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~--~~~~ 205 (433)
T 3bws_A 128 VRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTL--AYKA 205 (433)
T ss_dssp CEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC--CEEE
T ss_pred EEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCc--eEEE
Confidence 44555677888888899999999873 223 34589999999999875 8999999999999999988 6788
Q ss_pred EecccCCCeEEEEEecCCCEEE-EEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCe
Q 001349 850 QIREHTKAVTGLAILQSGEMLY-SGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGK 928 (1094)
Q Consensus 850 ~l~~H~~~V~sv~fspdg~~La-Sgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~ 928 (1094)
.+..|...+.+++|+|++++++ +++.|++|++||+.+++ ..........+.++. |+|+|+.++++..++.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~~-------~~~~g~~l~~~~~~~~ 276 (433)
T 3bws_A 206 TVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL--EIRKTDKIGLPRGLL-------LSKDGKELYIAQFSAS 276 (433)
T ss_dssp EEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE--EEEECCCCSEEEEEE-------ECTTSSEEEEEEEESC
T ss_pred EEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc--EEEEecCCCCceEEE-------EcCCCCEEEEEECCCC
Confidence 8889999999999999999885 45579999999999874 333333344455555 8888876433322110
Q ss_pred EEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEE-EEEECCCCEEE
Q 001349 929 TKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYT-ASTSLDGAAVK 1007 (1094)
Q Consensus 929 i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~l-as~s~Dg~~I~ 1007 (1094)
.+. +.||.|++||+.+++..... .|...+..++|+|++..+ ++++.++ .|+
T Consensus 277 ------------------~~~--~~dg~i~~~d~~~~~~~~~~-------~~~~~~~~~~~~~~g~~l~~~~~~~~-~v~ 328 (433)
T 3bws_A 277 ------------------NQE--SGGGRLGIYSMDKEKLIDTI-------GPPGNKRHIVSGNTENKIYVSDMCCS-KIE 328 (433)
T ss_dssp ------------------TTC--SCCEEEEEEETTTTEEEEEE-------EEEECEEEEEECSSTTEEEEEETTTT-EEE
T ss_pred ------------------ccc--cCCCeEEEEECCCCcEEeec-------cCCCCcceEEECCCCCEEEEEecCCC-EEE
Confidence 000 15889999999988765332 344578899999998654 5555664 999
Q ss_pred EEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEc---------------CCeEEEEECCCCcEEEEecccCCcceEEE
Q 001349 1008 MWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCK---------------GGTVEIWDQKRQIRIETLQTGTSGKVQCM 1070 (1094)
Q Consensus 1008 iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~---------------dg~I~vwd~~t~~~~~~l~~~h~~~I~~l 1070 (1094)
+||+.+++.+..+.+...+.+++|+|+ ++++++. ||.|++||..+++.+..+. + ...+.++
T Consensus 329 v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~-~-~~~~~~~ 406 (433)
T 3bws_A 329 VYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE-A-GNQPTGL 406 (433)
T ss_dssp EEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE-C-SSSEEEE
T ss_pred EEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEec-C-CCCCceE
Confidence 999999999999988889999999998 6777776 5799999999999998885 3 4579999
Q ss_pred EEcCCCCEEEEEeC-CCcEEEEeCC
Q 001349 1071 ALDDNEEFLVIGTS-DGRIQAWGLS 1094 (1094)
Q Consensus 1071 ~~Spdg~~L~sgs~-DG~I~iWdls 1094 (1094)
+|+|||++|++++. ||+|++|++.
T Consensus 407 ~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 407 DVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EECTTSCEEEEEETTTTEEEEEEET
T ss_pred EEcCCCCEEEEEECCCCeEEEEEec
Confidence 99999999998875 9999999974
No 108
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.94 E-value=6e-24 Score=246.44 Aligned_cols=260 Identities=10% Similarity=0.121 Sum_probs=206.8
Q ss_pred CcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EE-EEEECCCeEEEEecCCCcceeEEEecccCCCeE
Q 001349 785 MVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KI-FSGHSDGTIKVWTGRGSILHLIQQIREHTKAVT 859 (1094)
Q Consensus 785 ~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~L-aSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~ 859 (1094)
+..+++++.|+.|++||.. +....+..| ..+.+++|+|+ ++ ++++.|++|++||+.++ +.+..+..|. .+.
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~--~~~~~~~~~~-~v~ 77 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATN--NVIATVPAGS-SPQ 77 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT--EEEEEEECSS-SEE
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEEeecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCC--eEEEEEECCC-Ccc
Confidence 3467889999999999987 344455555 45899999997 44 77889999999999998 6777776555 899
Q ss_pred EEEEecCCCEEE-EEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCc
Q 001349 860 GLAILQSGEMLY-SGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYP 938 (1094)
Q Consensus 860 sv~fspdg~~La-Sgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v 938 (1094)
+++|+|+|++|+ +++.|++|++||+.+++.. ........+.++. |+|+|+.+
T Consensus 78 ~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~--~~~~~~~~~~~~~-------~s~dg~~l------------------ 130 (391)
T 1l0q_A 78 GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVA--GTVKTGKSPLGLA-------LSPDGKKL------------------ 130 (391)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEETTTTEEE--EEEECSSSEEEEE-------ECTTSSEE------------------
T ss_pred ceEECCCCCEEEEEECCCCEEEEEECCCCeEE--EEEeCCCCcceEE-------ECCCCCEE------------------
Confidence 999999999875 4556799999999998532 2222334455555 77887752
Q ss_pred eEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEE-EEECCCCEEEEEECCCCeEE
Q 001349 939 KCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTA-STSLDGAAVKMWSTSNYNMV 1017 (1094)
Q Consensus 939 ~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~la-s~s~Dg~~I~iwd~~~~~~~ 1017 (1094)
+++++.|+.|++||+.+++.... +..+ ..+..++|++++.+++ +++.+ +.|++||+.+++..
T Consensus 131 ---------~~~~~~~~~v~~~d~~~~~~~~~------~~~~-~~~~~~~~~~dg~~l~~~~~~~-~~v~~~d~~~~~~~ 193 (391)
T 1l0q_A 131 ---------YVTNNGDKTVSVINTVTKAVINT------VSVG-RSPKGIAVTPDGTKVYVANFDS-MSISVIDTVTNSVI 193 (391)
T ss_dssp ---------EEEETTTTEEEEEETTTTEEEEE------EECC-SSEEEEEECTTSSEEEEEETTT-TEEEEEETTTTEEE
T ss_pred ---------EEEeCCCCEEEEEECCCCcEEEE------EecC-CCcceEEECCCCCEEEEEeCCC-CEEEEEECCCCeEE
Confidence 36777899999999999887643 2333 4679999999998774 55555 59999999999999
Q ss_pred EEecCCCCEEEEEEeCC--EEEEEE---cCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEE-EEEeCCCcEEEE
Q 001349 1018 GSLPTLSEVRAMVVSSE--LVYLGC---KGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFL-VIGTSDGRIQAW 1091 (1094)
Q Consensus 1018 ~~~~~~~~v~~l~~spd--~l~sgs---~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L-~sgs~DG~I~iW 1091 (1094)
..+.+...+.+++|+|+ ++++++ .++.|++||+.+++.+..+. .|. .+.+++|+|||++| ++++.||.|++|
T Consensus 194 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~ 271 (391)
T 1l0q_A 194 DTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP-VGP-DPAGIAVTPDGKKVYVALSFXNTVSVI 271 (391)
T ss_dssp EEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE-CCS-SEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEe-cCC-CccEEEEccCCCEEEEEcCCCCEEEEE
Confidence 98888889999999998 677777 68999999999999988885 443 58999999999987 677889999999
Q ss_pred eCC
Q 001349 1092 GLS 1094 (1094)
Q Consensus 1092 dls 1094 (1094)
|+.
T Consensus 272 d~~ 274 (391)
T 1l0q_A 272 DTA 274 (391)
T ss_dssp ETT
T ss_pred ECC
Confidence 973
No 109
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.1e-24 Score=258.55 Aligned_cols=235 Identities=11% Similarity=0.068 Sum_probs=187.6
Q ss_pred CCCcEEEEEEeCC--E-EEEEECCCeEEEEecC--CCcceeEEEec--ccCCCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q 001349 812 ENGKVLSIACFRD--K-IFSGHSDGTIKVWTGR--GSILHLIQQIR--EHTKAVTGLAILQSGEMLYSGSLDKTARVWSI 884 (1094)
Q Consensus 812 h~~~V~~l~fspd--~-LaSgs~Dg~I~vWd~~--t~~~~~~~~l~--~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi 884 (1094)
|.+.|++++|+|+ + +++|+.||+|++||+. ++ ..+..+. .|...|++++|+|+|++|++|+.||.|++|++
T Consensus 101 ~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~ 178 (450)
T 2vdu_B 101 IYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSK--NVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDI 178 (450)
T ss_dssp CCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSS--SCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred cCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCC--ceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEec
Confidence 4557999999997 6 4899999999999998 77 5666665 67799999999999999999999999999999
Q ss_pred CCCceEE--E-EecccCccceeeeecCceEEEeeC---CCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEE
Q 001349 885 GNEEIHC--V-QVHDIKDQIQNLAVSNSILCFIPQ---GAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQ 958 (1094)
Q Consensus 885 ~~~~~~~--~-~~~~~~~~V~~v~~~~~~~~fspd---g~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~ 958 (1094)
.++.... . ....+...|.++. |+|+ ++ .+++|+.|+.|+
T Consensus 179 ~~~~~~~~~~~~~~~h~~~v~~~~-------~sp~~~~~~----------------------------~l~s~~~d~~i~ 223 (450)
T 2vdu_B 179 NSIPEEKFTQEPILGHVSMLTDVH-------LIKDSDGHQ----------------------------FIITSDRDEHIK 223 (450)
T ss_dssp TSCCCSSCCCCCSEECSSCEEEEE-------EEECTTSCE----------------------------EEEEEETTSCEE
T ss_pred CCcccccccceeeecccCceEEEE-------EcCCCCCCc----------------------------EEEEEcCCCcEE
Confidence 8764210 0 1123455566665 6666 44 488999999999
Q ss_pred EEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecC----------------
Q 001349 959 EIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT---------------- 1022 (1094)
Q Consensus 959 iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~---------------- 1022 (1094)
+||+.++..+.. .+.+|...|++++|+ ++.++++++.|+ +|++||+.+++++..+..
T Consensus 224 vwd~~~~~~~~~-----~~~~h~~~v~~~~~s-d~~~l~s~~~d~-~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (450)
T 2vdu_B 224 ISHYPQCFIVDK-----WLFGHKHFVSSICCG-KDYLLLSAGGDD-KIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPP 296 (450)
T ss_dssp EEEESCTTCEEE-----ECCCCSSCEEEEEEC-STTEEEEEESSS-EEEEEETTTCCEEEEEECHHHHGGGCCTTSBC--
T ss_pred EEECCCCceeee-----eecCCCCceEEEEEC-CCCEEEEEeCCC-eEEEEECCCCcEeeeecchhhhhhhhhhcccccc
Confidence 999999887632 245799999999999 999999999986 999999999998887752
Q ss_pred ----------CCCEEEEEEeCC--EEEEEE-cCCeEEEEEC--CCC---cEEEEecccCCcceEEEEEcCCCCEEEEE-e
Q 001349 1023 ----------LSEVRAMVVSSE--LVYLGC-KGGTVEIWDQ--KRQ---IRIETLQTGTSGKVQCMALDDNEEFLVIG-T 1083 (1094)
Q Consensus 1023 ----------~~~v~~l~~spd--~l~sgs-~dg~I~vwd~--~t~---~~~~~l~~~h~~~I~~l~~Spdg~~L~sg-s 1083 (1094)
...+..++|+|+ ++++++ .|+.|++||+ .++ +.+..+. +| +.|++++|+|++ ++++. +
T Consensus 297 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~-~~-~~v~~~~~~~~~-~~v~~~~ 373 (450)
T 2vdu_B 297 RFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIIT-FP-YNVISLSAHNDE-FQVTLDN 373 (450)
T ss_dssp --------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEE-CS-SCEEEEEEETTE-EEEEECC
T ss_pred cccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEec-cC-CceEEEEecCCc-EEEEEec
Confidence 246899999988 888888 8999999999 555 6677774 56 789999999965 44444 3
Q ss_pred C------CCcEEEEeC
Q 001349 1084 S------DGRIQAWGL 1093 (1094)
Q Consensus 1084 ~------DG~I~iWdl 1093 (1094)
. +..|.+|.+
T Consensus 374 ~~~~~~~~~~i~v~~~ 389 (450)
T 2vdu_B 374 KESSGVQKNFAKFIEY 389 (450)
T ss_dssp TTCCSSCCCSEEEEEE
T ss_pred ccCCCCCCcceEEEEE
Confidence 2 455888865
No 110
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.94 E-value=1.5e-24 Score=241.04 Aligned_cols=265 Identities=14% Similarity=0.087 Sum_probs=194.1
Q ss_pred EEEEeeCCCCeEEEeCC-----cceeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcceeEEEecccCCCe
Q 001349 787 KVLSNGHDSSADFWNHR-----ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAV 858 (1094)
Q Consensus 787 ~l~s~s~dg~I~vWd~~-----~~~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V 858 (1094)
.+++++ ..+|++|+.. +..+.+..|..+|..+.|.|| ++..+ -=+-|...|
T Consensus 56 ~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--------------------~~~~~~~~v 114 (356)
T 2w18_A 56 CIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVA--------------------LGNLEIREI 114 (356)
T ss_dssp EEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEE--------------------ECSSSEEEE
T ss_pred EEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeee--------------------eccccccce
Confidence 455555 4689999986 456788899999999999996 22221 112245678
Q ss_pred EEEEEecC----CCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC
Q 001349 859 TGLAILQS----GEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS 934 (1094)
Q Consensus 859 ~sv~fspd----g~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~ 934 (1094)
++++|+|| ++++++++.+ +++|++.++++.......+...|..+. |+|+|+.+... ..+
T Consensus 115 ~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~g~d~~V~~~~-------~s~dG~~~~s~--------~~~ 177 (356)
T 2w18_A 115 RALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSGTLSDQQVEVMT-------FAEDGGGKENQ--------FLM 177 (356)
T ss_dssp EEECC------CCEEEEEEEEE--EEEEEETTTEEEEEESSSTTCEEEEEE-------ECTTSCEEEEE--------EEC
T ss_pred EEEEECCCccccccEEEeCCCe--EEEEecCCCcEEEecccCCCCcEEEEE-------ECCCCceeeee--------ccC
Confidence 89999999 8999998854 888999887544433445677888877 88888876532 234
Q ss_pred CCCceEEEEeC-----CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEE------------E
Q 001349 935 SKYPKCLALVQ-----GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYT------------A 997 (1094)
Q Consensus 935 ~~~v~~l~~s~-----~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~l------------a 997 (1094)
...+..++|++ ..+++|+.|++|++||+.+|+.+..+.++. .+...+.+++|+|++.++ +
T Consensus 178 ~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~---~~v~~v~~vafSpdG~~lvs~s~~~~~w~la 254 (356)
T 2w18_A 178 PPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDD---SYQASVCHKAYSEMGLLFIVLSHPCAKESES 254 (356)
T ss_dssp CCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC------CCCEEEEEEETTEEEEEEC---------
T ss_pred CCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCC---cceeeeEEEEECCCCCEEEEeccCCCcceee
Confidence 55566666654 579999999999999999999885443211 122467888999999887 4
Q ss_pred EEECCCCEEEEEECCCCeEEEEec------CCCCEEEEEEeCCEEEEEEcCCeEEEEECCCCcEEEEecccCCcceE-EE
Q 001349 998 STSLDGAAVKMWSTSNYNMVGSLP------TLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQ-CM 1070 (1094)
Q Consensus 998 s~s~Dg~~I~iwd~~~~~~~~~~~------~~~~v~~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~-~l 1070 (1094)
+++.|+ +|++||..+++.+..+. |...+.+..++...+++|+.|++|+|||+.+++++.++. +|...+. ++
T Consensus 255 SGs~D~-tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~-gH~~~vvs~v 332 (356)
T 2w18_A 255 LRSPVF-QLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLP-PVSDQHWSFV 332 (356)
T ss_dssp ---CCE-EEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEEC-CC--CCCCEE
T ss_pred ccCCCc-EEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEec-CCCCCeEEEE
Confidence 566664 99999999999877652 334466666666689999999999999999999999994 7776554 68
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1071 ALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1071 ~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
+|||||++|++|+.||+|+|||+.
T Consensus 333 afSPDG~~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 333 KWSGTDSHLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp EECSSSSEEEEECTTSCEEEEEEC
T ss_pred EECCCCCEEEEEECCCcEEEecCC
Confidence 999999999999999999999964
No 111
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.94 E-value=1.2e-24 Score=255.90 Aligned_cols=244 Identities=16% Similarity=0.193 Sum_probs=198.4
Q ss_pred ccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEec
Q 001349 775 LRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIR 852 (1094)
Q Consensus 775 ~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~ 852 (1094)
.+....|++++.++++|+.||+|++||+. .....+.+|...|.+++|++.++++|+.|+++++||..... ..+..+.
T Consensus 149 ~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~-~~~~~~~ 227 (420)
T 4gga_A 149 YISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAE-HHVATLS 227 (420)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSS-CEEEEEE
T ss_pred cEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccc-eeeEEec
Confidence 44567788899999999999999999997 45677889999999999999999999999999999998754 5678889
Q ss_pred ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCce---EEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeE
Q 001349 853 EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEI---HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKT 929 (1094)
Q Consensus 853 ~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~---~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i 929 (1094)
+|...+..+.|+|+|.++++++.||.|++|+..+++. .......+...|.++. |+|++..++.
T Consensus 228 ~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~-------~~p~~~~~la------- 293 (420)
T 4gga_A 228 GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA-------WCPWQSNVLA------- 293 (420)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEE-------ECTTCTTEEE-------
T ss_pred ccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeee-------eCCCcccEEE-------
Confidence 9999999999999999999999999999999988641 1122233455555555 5555543211
Q ss_pred EEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEE--CCCCEEE
Q 001349 930 KLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTS--LDGAAVK 1007 (1094)
Q Consensus 930 ~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s--~Dg~~I~ 1007 (1094)
.++|+.|++|++||+.++..... +.. ...+.++.|++++..+++++ .|+ .|+
T Consensus 294 ------------------~~~gs~D~~I~iwd~~t~~~~~~------~~~-~~~v~~~~~~~~~~~lv~~sg~~d~-~I~ 347 (420)
T 4gga_A 294 ------------------TGGGTSDRHIRIWNVCSGACLSA------VDA-HSQVCSILWSPHYKELISGHGFAQN-QLV 347 (420)
T ss_dssp ------------------EEECTTTCEEEEEETTTTEEEEE------EEC-SSCEEEEEEETTTTEEEEEECTTTC-CEE
T ss_pred ------------------EEeecCCCEEEEEeCCcccccee------ecc-ccceeeeeecCCCCeEEEEEecCCC-EEE
Confidence 23456899999999999988743 222 35789999999888887765 454 999
Q ss_pred EEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEe
Q 001349 1008 MWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETL 1059 (1094)
Q Consensus 1008 iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l 1059 (1094)
|||+.+++++..+. |.+.|++++|+|| +|++|+.||+|+|||+....+....
T Consensus 348 iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~ 402 (420)
T 4gga_A 348 IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRR 402 (420)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC---
T ss_pred EEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchh
Confidence 99999999999998 7889999999998 8999999999999999876655554
No 112
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.93 E-value=6e-25 Score=256.65 Aligned_cols=238 Identities=18% Similarity=0.203 Sum_probs=189.4
Q ss_pred EEEEEEeCC---EEEEEECCCeEEEEecCCCcc--eeEEEecccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCce
Q 001349 816 VLSIACFRD---KIFSGHSDGTIKVWTGRGSIL--HLIQQIREHTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEEI 889 (1094)
Q Consensus 816 V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~--~~~~~l~~H~~~V~sv~fsp-dg~~LaSgs~DgtI~vWdi~~~~~ 889 (1094)
...++++|+ ++++|+.||.|+|||+.+... ..+..+.+|.+.|++++|+| ++++|++|+.||+|++||+.++..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence 446889997 445688999999999865411 23456789999999999999 999999999999999999988631
Q ss_pred ------EEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECC
Q 001349 890 ------HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLA 963 (1094)
Q Consensus 890 ------~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~ 963 (1094)
.......|...|.++. |+|++. ..+++|+.||.|++||+.
T Consensus 117 ~~~~~~~~~~~~~h~~~v~~~~-------~~p~~~---------------------------~~l~s~~~dg~i~iwd~~ 162 (402)
T 2aq5_A 117 VLPLREPVITLEGHTKRVGIVA-------WHPTAQ---------------------------NVLLSAGCDNVILVWDVG 162 (402)
T ss_dssp SSCBCSCSEEEECCSSCEEEEE-------ECSSBT---------------------------TEEEEEETTSCEEEEETT
T ss_pred ccccCCceEEecCCCCeEEEEE-------ECcCCC---------------------------CEEEEEcCCCEEEEEECC
Confidence 1112223444555554 555542 248899999999999999
Q ss_pred CCceeEEeccceee--cCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEe-c-CCCC-EEEEEEeCC--EE
Q 001349 964 TGTFATIQTGHRKL--LGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSL-P-TLSE-VRAMVVSSE--LV 1036 (1094)
Q Consensus 964 ~~~~~~~~~~~~~~--~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~-~-~~~~-v~~l~~spd--~l 1036 (1094)
+++.. ..+ .+|...|++++|+|++.++++++.|| .|++||+++++.+..+ . |... +.++.|+|+ ++
T Consensus 163 ~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 235 (402)
T 2aq5_A 163 TGAAV------LTLGPDVHPDTIYSVDWSRDGALICTSCRDK-RVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKIL 235 (402)
T ss_dssp TTEEE------EEECTTTCCSCEEEEEECTTSSCEEEEETTS-EEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEE
T ss_pred CCCcc------EEEecCCCCCceEEEEECCCCCEEEEEecCC-cEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEE
Confidence 99876 445 67899999999999999999999997 9999999999999888 4 4444 899999998 77
Q ss_pred EEE---EcCCeEEEEECCCCcE-EEEecccCCcceEEEEEcCCCCEEEE-EeCCCcEEEEeCC
Q 001349 1037 YLG---CKGGTVEIWDQKRQIR-IETLQTGTSGKVQCMALDDNEEFLVI-GTSDGRIQAWGLS 1094 (1094)
Q Consensus 1037 ~sg---s~dg~I~vwd~~t~~~-~~~l~~~h~~~I~~l~~Spdg~~L~s-gs~DG~I~iWdls 1094 (1094)
++| +.|+.|++||+.+++. +......|...|.+++|+|++++|++ |+.||.|++||+.
T Consensus 236 ~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~ 298 (402)
T 2aq5_A 236 TTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEIT 298 (402)
T ss_dssp EEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEEC
T ss_pred EEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEec
Confidence 777 6899999999998664 33443357778999999999999964 5579999999973
No 113
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.93 E-value=2.5e-24 Score=248.49 Aligned_cols=231 Identities=10% Similarity=0.095 Sum_probs=178.2
Q ss_pred cccccCcEEEEe-----------eCCCCeEEEeCCcc---e--------eecccCCCcEEEEEEeCC--EEE--EEECCC
Q 001349 780 PLAFEMVKVLSN-----------GHDSSADFWNHREL---V--------HVDSSENGKVLSIACFRD--KIF--SGHSDG 833 (1094)
Q Consensus 780 ~~~~d~~~l~s~-----------s~dg~I~vWd~~~~---~--------~~~~~h~~~V~~l~fspd--~La--Sgs~Dg 833 (1094)
.+.+++..+++| +.|+.+++|++... . .....+...+.+++|+|| +++ +|+.|+
T Consensus 78 s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~ 157 (365)
T 4h5i_A 78 AIDASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPA 157 (365)
T ss_dssp EEEEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSC
T ss_pred EEEeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCC
Confidence 455566666554 56788999987521 1 112234567999999997 544 556899
Q ss_pred eEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEE-EEecccCccceeeeecCceEE
Q 001349 834 TIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHC-VQVHDIKDQIQNLAVSNSILC 912 (1094)
Q Consensus 834 ~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~-~~~~~~~~~V~~v~~~~~~~~ 912 (1094)
+|+|||+.++ .++..+. |.+.|++++|+|||+++++++.|+ +++|+..++.... .....+...|.++.
T Consensus 158 ~i~iwd~~~~--~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~------- 226 (365)
T 4h5i_A 158 IMRIIDPSDL--TEKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARKTDFDKNWSLSKIN------- 226 (365)
T ss_dssp EEEEEETTTT--EEEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEECCCCTTEEEEEEE-------
T ss_pred EEEEeECCCC--cEEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCcceeeeecCCCCCCEEEEE-------
Confidence 9999999998 6777774 888999999999999999998665 6666666665332 23334566777777
Q ss_pred EeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCC----eEEEEECCCCceeEEeccceeecCCCCCeEEEE
Q 001349 913 FIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDG----AIQEIDLATGTFATIQTGHRKLLGKANPVHALQ 988 (1094)
Q Consensus 913 fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg----~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~ 988 (1094)
|+|+|+. +++++.|+ .++.||+..+....... ..+.+|...|++++
T Consensus 227 fspdg~~----------------------------l~~~s~d~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~V~~~~ 276 (365)
T 4h5i_A 227 FIADDTV----------------------------LIAASLKKGKGIVLTKISIKSGNTSVLRS--KQVTNRFKGITSMD 276 (365)
T ss_dssp EEETTEE----------------------------EEEEEESSSCCEEEEEEEEETTEEEEEEE--EEEESSCSCEEEEE
T ss_pred EcCCCCE----------------------------EEEEecCCcceeEEeecccccceecceee--eeecCCCCCeEeEE
Confidence 8898876 44555554 57888887765432222 46778999999999
Q ss_pred EeCCccEEEEEECCCCEEEEEECCCCeEEEEec--CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCC
Q 001349 989 VHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP--TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKR 1052 (1094)
Q Consensus 989 fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~--~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t 1052 (1094)
|+|++.++++++.|+ +|+|||+.+++++.++. |...|++++|+|| +|++||.|++|+|||+..
T Consensus 277 ~Spdg~~lasgs~D~-~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 277 VDMKGELAVLASNDN-SIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp ECTTSCEEEEEETTS-CEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred ECCCCCceEEEcCCC-EEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 999999999999997 99999999999998864 7899999999999 899999999999999864
No 114
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.93 E-value=1.7e-24 Score=247.36 Aligned_cols=258 Identities=14% Similarity=0.165 Sum_probs=204.5
Q ss_pred hhhcccccccccc---CcEEEEeeCCCCeEEEeCCc----ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCC
Q 001349 772 LRELRKYSPLAFE---MVKVLSNGHDSSADFWNHRE----LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRG 842 (1094)
Q Consensus 772 ~~~~~~~~~~~~d---~~~l~s~s~dg~I~vWd~~~----~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t 842 (1094)
|...+....+.++ +.++++|+.||.|++||... ....+.+|.+.|++++|+|+ +|++|+.||+|++||+.+
T Consensus 38 h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 117 (368)
T 3mmy_A 38 PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSS 117 (368)
T ss_dssp CSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCC
Confidence 4445556677777 69999999999999999873 22567889999999999996 999999999999999999
Q ss_pred CcceeEEEecccCCCeEEEEE--ecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeE
Q 001349 843 SILHLIQQIREHTKAVTGLAI--LQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGI 920 (1094)
Q Consensus 843 ~~~~~~~~l~~H~~~V~sv~f--spdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l 920 (1094)
+ ..+. +.+|...|++++| +|++++|++++.||+|++||+.+++..... .....+.+ +.+.+..+
T Consensus 118 ~--~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~--~~~~~~~~---------~~~~~~~~ 183 (368)
T 3mmy_A 118 N--QAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVL--QLPERCYC---------ADVIYPMA 183 (368)
T ss_dssp T--EEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEE--ECSSCEEE---------EEEETTEE
T ss_pred C--Ccee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEE--ecCCCceE---------EEecCCee
Confidence 8 4444 5679999999999 889999999999999999999987532222 12223333 44455678
Q ss_pred EEEEeCCeEEEEcCCC--------------CceEEEEe--C----CEEEEEEcCCeEEEEECCCCc---eeEEeccceee
Q 001349 921 KVHLRNGKTKLLNSSK--------------YPKCLALV--Q----GKVYCGCQDGAIQEIDLATGT---FATIQTGHRKL 977 (1094)
Q Consensus 921 ~~~~~~g~i~l~~~~~--------------~v~~l~~s--~----~~l~sgs~Dg~I~iwDl~~~~---~~~~~~~~~~~ 977 (1094)
+++..++.+.+|+... .+.++.+. . ..+++|+.||.|++||+.... .. ..+
T Consensus 184 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~------~~~ 257 (368)
T 3mmy_A 184 VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDN------FTF 257 (368)
T ss_dssp EEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHS------EEE
T ss_pred EEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccc------eee
Confidence 8888888898888642 34444443 2 239999999999999999873 23 233
Q ss_pred cCCCC------------CeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcC
Q 001349 978 LGKAN------------PVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKG 1042 (1094)
Q Consensus 978 ~~h~~------------~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~d 1042 (1094)
.+|.. +|++++|+|++.++++++.|| .|++||+.+++++..+. |...|.+++|+|+ ++++|+.|
T Consensus 258 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d 336 (368)
T 3mmy_A 258 KCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDG-RFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSY 336 (368)
T ss_dssp ECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTS-CEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECC
T ss_pred eeeecccccccccccccceEEEEEecCCCEEEEEccCC-eEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecc
Confidence 34443 799999999999999999997 99999999999999988 6889999999998 89999988
Q ss_pred CeEEEEEC
Q 001349 1043 GTVEIWDQ 1050 (1094)
Q Consensus 1043 g~I~vwd~ 1050 (1094)
+..+.|++
T Consensus 337 ~~~~~~~~ 344 (368)
T 3mmy_A 337 DWSKGHEF 344 (368)
T ss_dssp CSTTCGGG
T ss_pred cccccccc
Confidence 75555443
No 115
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.93 E-value=3.9e-24 Score=242.61 Aligned_cols=261 Identities=13% Similarity=0.136 Sum_probs=209.5
Q ss_pred hhccccccccccCcEEEEeeCCCCeEEEeCCc-c----eeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEec-CCC
Q 001349 773 RELRKYSPLAFEMVKVLSNGHDSSADFWNHRE-L----VHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTG-RGS 843 (1094)
Q Consensus 773 ~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~-~----~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~-~t~ 843 (1094)
...+....+.+++.++++++.||.|++|+... . .....+|.+.|++++|+|+ +|++|+.||.|++||+ .++
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~ 90 (342)
T 1yfq_A 11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP 90 (342)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS
T ss_pred CCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCC
Confidence 34455667788999999999999999999872 2 4556689999999999974 7999999999999999 887
Q ss_pred cceeEEEecc--cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC---------CceEEEEecccCccceeeeecCceEE
Q 001349 844 ILHLIQQIRE--HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGN---------EEIHCVQVHDIKDQIQNLAVSNSILC 912 (1094)
Q Consensus 844 ~~~~~~~l~~--H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~---------~~~~~~~~~~~~~~V~~v~~~~~~~~ 912 (1094)
....+.+ |...|++++|+| ++++++++.||+|++||+.+ ++ ......+...+.++.
T Consensus 91 ---~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~------- 157 (342)
T 1yfq_A 91 ---SFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNL--NSNNTKVKNKIFTMD------- 157 (342)
T ss_dssp ---SEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEES--CSSSSSSCCCEEEEE-------
T ss_pred ---ceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCC--eeeEEeeCCceEEEE-------
Confidence 3477888 999999999999 99999999999999999876 42 222334667788877
Q ss_pred EeeCCCeEEEEEeCCeEEEEcCCC---------------CceEEEEeC---CEEEEEEcCCeEEEEECCCC------cee
Q 001349 913 FIPQGAGIKVHLRNGKTKLLNSSK---------------YPKCLALVQ---GKVYCGCQDGAIQEIDLATG------TFA 968 (1094)
Q Consensus 913 fspdg~~l~~~~~~g~i~l~~~~~---------------~v~~l~~s~---~~l~sgs~Dg~I~iwDl~~~------~~~ 968 (1094)
|+|++ ++++..++.+.+|+... .+.++.+++ ..+++|+.||.|++||+..+ ...
T Consensus 158 ~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~ 235 (342)
T 1yfq_A 158 TNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR 235 (342)
T ss_dssp ECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTC
T ss_pred ecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccc
Confidence 77766 88888899999998543 477888876 56999999999999999876 444
Q ss_pred EEecccee---ecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-C-CCCEEEEEEeCCEEEEEEcCC
Q 001349 969 TIQTGHRK---LLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-T-LSEVRAMVVSSELVYLGCKGG 1043 (1094)
Q Consensus 969 ~~~~~~~~---~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~-~~~v~~l~~spd~l~sgs~dg 1043 (1094)
..+..+.. -.+|...|++++|+|++.++++++.|| .|++||+.+++.+..+. | ...|.+++....++++|+.||
T Consensus 236 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~Dg 314 (342)
T 1yfq_A 236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDG-IISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDD 314 (342)
T ss_dssp EEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTS-CEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECT
T ss_pred eeeecccccccccccceeEEEEEEcCCCCEEEEecCCc-eEEEEcCccHhHhhhhhcccCCCceEecCCCCeEEEEecCC
Confidence 32222111 012344999999999999999999987 99999999999999988 5 788999992223999999999
Q ss_pred e-EEEEE
Q 001349 1044 T-VEIWD 1049 (1094)
Q Consensus 1044 ~-I~vwd 1049 (1094)
+ .+.|.
T Consensus 315 ~~~~~~~ 321 (342)
T 1yfq_A 315 TFKTNAA 321 (342)
T ss_dssp HHHHCSS
T ss_pred ccccccc
Confidence 8 55554
No 116
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=6.7e-24 Score=251.93 Aligned_cols=202 Identities=12% Similarity=0.139 Sum_probs=166.9
Q ss_pred ccCCCeEEEEEecCCCEE-EEEeCCCcEEEEECC--CCc-eEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCe
Q 001349 853 EHTKAVTGLAILQSGEML-YSGSLDKTARVWSIG--NEE-IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGK 928 (1094)
Q Consensus 853 ~H~~~V~sv~fspdg~~L-aSgs~DgtI~vWdi~--~~~-~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~ 928 (1094)
+|.+.|++++|+|+|++| ++|+.||+|++||+. +++ ...+....+...|.++. |+|+|+.
T Consensus 100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~-------~sp~~~~--------- 163 (450)
T 2vdu_B 100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAIS-------IAEDDTT--------- 163 (450)
T ss_dssp CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEE-------ECTTSSE---------
T ss_pred ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEE-------EcCCCCE---------
Confidence 345579999999999996 899999999999998 664 33333334556677766 7777764
Q ss_pred EEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCC---ccEEEEEECCCCE
Q 001349 929 TKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG---LVYTASTSLDGAA 1005 (1094)
Q Consensus 929 i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~---~~~las~s~Dg~~ 1005 (1094)
+++|+.||.|++||+.++..... ....+.+|...|++++|+|+ +.++++++.|+ +
T Consensus 164 -------------------l~~~~~~g~v~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~-~ 221 (450)
T 2vdu_B 164 -------------------VIIADKFGDVYSIDINSIPEEKF--TQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDE-H 221 (450)
T ss_dssp -------------------EEEEETTSEEEEEETTSCCCSSC--CCCCSEECSSCEEEEEEEECTTSCEEEEEEETTS-C
T ss_pred -------------------EEEEeCCCcEEEEecCCcccccc--cceeeecccCceEEEEEcCCCCCCcEEEEEcCCC-c
Confidence 78889999999999988765410 01256788999999999999 99999999996 9
Q ss_pred EEEEECCCCeEEEEec--CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEeccc-------------------
Q 001349 1006 VKMWSTSNYNMVGSLP--TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTG------------------- 1062 (1094)
Q Consensus 1006 I~iwd~~~~~~~~~~~--~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~------------------- 1062 (1094)
|++||+.++..+..+. |...|.+++|+ + ++++|+.|++|++||+.+++++..+..+
T Consensus 222 i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (450)
T 2vdu_B 222 IKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQN 300 (450)
T ss_dssp EEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC------
T ss_pred EEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccc
Confidence 9999999998887743 77899999998 6 9999999999999999999988888421
Q ss_pred -----CCcceEEEEEcCCCCEEEEEe-CCCcEEEEeC
Q 001349 1063 -----TSGKVQCMALDDNEEFLVIGT-SDGRIQAWGL 1093 (1094)
Q Consensus 1063 -----h~~~I~~l~~Spdg~~L~sgs-~DG~I~iWdl 1093 (1094)
+...|.+++|+|++++|++++ .|+.|++|++
T Consensus 301 ~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 301 ENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp ----CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred cccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 234699999999999999999 8999999997
No 117
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1e-24 Score=276.16 Aligned_cols=262 Identities=15% Similarity=0.174 Sum_probs=204.1
Q ss_pred HHHHhhhccccccccccCcEEEEeeCCCCeEEEeCC----cceeecccCCCcEEEEEEeC----CEEEEEECCCeEEEEe
Q 001349 768 IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR----ELVHVDSSENGKVLSIACFR----DKIFSGHSDGTIKVWT 839 (1094)
Q Consensus 768 ~~~~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~----~~~~~~~~h~~~V~~l~fsp----d~LaSgs~Dg~I~vWd 839 (1094)
.+++|...+....+++++.++++|+.||+|++||.. .....+.+|.+.|++++|++ ++|++|+.||+|++||
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd 83 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEE
Confidence 345677777788888999999999999999999986 34567889999999999985 3999999999999999
Q ss_pred cCCCcceeEEEecccCCCeEEEEEecC--CCEEEEEeCCCcEEEEECCCCc-eEEEEecccCccceeeeecCceEEEeeC
Q 001349 840 GRGSILHLIQQIREHTKAVTGLAILQS--GEMLYSGSLDKTARVWSIGNEE-IHCVQVHDIKDQIQNLAVSNSILCFIPQ 916 (1094)
Q Consensus 840 ~~t~~~~~~~~l~~H~~~V~sv~fspd--g~~LaSgs~DgtI~vWdi~~~~-~~~~~~~~~~~~V~~v~~~~~~~~fspd 916 (1094)
+.++....+..+.+|...|++++|+|+ ++++++|+.||+|++||+.++. ........+...|.++. |+|.
T Consensus 84 ~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~-------~~p~ 156 (753)
T 3jro_A 84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS-------WAPA 156 (753)
T ss_dssp EETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEE-------ECCC
T ss_pred CCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEE-------ecCc
Confidence 999855588889999999999999999 9999999999999999998873 22333345667777777 5553
Q ss_pred CCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCC---c
Q 001349 917 GAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG---L 993 (1094)
Q Consensus 917 g~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~---~ 993 (1094)
..... +. ......+..+++|+.||.|++||++++....... ..+.+|...|++++|+|+ +
T Consensus 157 ~~~~~-----~~----------~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~--~~~~~h~~~V~~l~~sp~~~~~ 219 (753)
T 3jro_A 157 TIEED-----GE----------HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE--STLEGHSDWVRDVAWSPTVLLR 219 (753)
T ss_dssp C------------------------CGGGCCEEEEETTSCEEEEEEETTTTEEEEE--EEECCCSSCEEEEEECCCCSSS
T ss_pred ccccc-----cc----------cccCCCCCEEEEEECCCeEEEEeccCCcccceee--eeecCCCCcEEEEEeccCCCCC
Confidence 11000 00 0000012358999999999999998875432211 467789999999999999 8
Q ss_pred cEEEEEECCCCEEEEEECCCCeE-----EE-EecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCc
Q 001349 994 VYTASTSLDGAAVKMWSTSNYNM-----VG-SLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQI 1054 (1094)
Q Consensus 994 ~~las~s~Dg~~I~iwd~~~~~~-----~~-~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~ 1054 (1094)
.++++++.|| .|++||+.++.. .. ...+...|++++|+|+ ++++|+.||.|++||+.++.
T Consensus 220 ~~l~s~s~Dg-~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 220 SYLASVSQDR-TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp EEEEEEESSS-CEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred CEEEEEecCC-EEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 9999999997 999999988641 11 1126788999999998 89999999999999998643
No 118
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.92 E-value=2.9e-23 Score=232.58 Aligned_cols=239 Identities=17% Similarity=0.206 Sum_probs=195.3
Q ss_pred ccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEec
Q 001349 775 LRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIR 852 (1094)
Q Consensus 775 ~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~ 852 (1094)
.+....+.+++.++++|+.||+|++|+.. +......+|...+.++.+.++.+++|+.++.+++|+..++. ..+..+.
T Consensus 69 ~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~-~~~~~~~ 147 (318)
T 4ggc_A 69 YISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAE-HHVATLS 147 (318)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSS-CEEEEEE
T ss_pred eEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCc-eeEEEEc
Confidence 34556788899999999999999999998 45677889999999999999999999999999999988764 5677888
Q ss_pred ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCce---EEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeE
Q 001349 853 EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEI---HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKT 929 (1094)
Q Consensus 853 ~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~---~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i 929 (1094)
+|...+..+.|+++++++++++.||+|++||+.+++. .......+...|..+. ++|++..++
T Consensus 148 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~~~~-------- 212 (318)
T 4ggc_A 148 GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA-------WCPWQSNVL-------- 212 (318)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEE-------ECTTSTTEE--------
T ss_pred CccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEE-------ecCCCCcEE--------
Confidence 9999999999999999999999999999999988641 1122223344455544 555444321
Q ss_pred EEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEE--CCCCEEE
Q 001349 930 KLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTS--LDGAAVK 1007 (1094)
Q Consensus 930 ~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s--~Dg~~I~ 1007 (1094)
.+++++.++.|++||...+.... ...+...+..+.|++++..+++++ .|+ .|+
T Consensus 213 -----------------~~~~~~~~~~i~lwd~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~~~~sg~~d~-~i~ 267 (318)
T 4ggc_A 213 -----------------ATGGGTSDRHIRIWNVCSGACLS-------AVDAHSQVCSILWSPHYKELISGHGFAQN-QLV 267 (318)
T ss_dssp -----------------EEEECTTTCEEEEEETTTCCEEE-------EEECSSCEEEEEEETTTTEEEEEECTTTC-CEE
T ss_pred -----------------EEEecCCCCEEEEEecccccccc-------cccceeeeeeeeecccccceEEEEEcCCC-EEE
Confidence 14567889999999999887653 234567899999999888777654 554 999
Q ss_pred EEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCc
Q 001349 1008 MWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQI 1054 (1094)
Q Consensus 1008 iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~ 1054 (1094)
+||+.+++++.++. |.+.|++++|+|| +|++|+.||+|+|||+....
T Consensus 268 iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 268 IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred EEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 99999999999998 7889999999998 89999999999999987643
No 119
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.92 E-value=5.2e-25 Score=259.74 Aligned_cols=266 Identities=12% Similarity=0.077 Sum_probs=207.4
Q ss_pred HhhhccccccccccCcEEEEeeCCCCeEEEeCCcceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeE
Q 001349 771 GLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLI 848 (1094)
Q Consensus 771 ~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~ 848 (1094)
+|........+.|+| .++++.+|+..........|...|++++|||+ +||+++.||+|++||..+ ++
T Consensus 50 gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~----~l 118 (588)
T 2j04_A 50 CNSKNLFHVKEFPLE-------FENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK----ML 118 (588)
T ss_dssp SBGGGTEEEEEECCC-------CCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE----EE
T ss_pred CCCccEEEEEECCCC-------CcceEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc----ee
Confidence 344555556666666 56666667655333333367899999999997 999999999999999543 66
Q ss_pred EEecccCC-----CeEEEEEecCCCEEEEEeCCCcEEEEECCCCce--------EEEE--ecccCccceeeeecCceEEE
Q 001349 849 QQIREHTK-----AVTGLAILQSGEMLYSGSLDKTARVWSIGNEEI--------HCVQ--VHDIKDQIQNLAVSNSILCF 913 (1094)
Q Consensus 849 ~~l~~H~~-----~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~--------~~~~--~~~~~~~V~~v~~~~~~~~f 913 (1094)
..+. |.. .|.+++|||||++|++|+.||+|++||+.++.. ..+. ...|...|.+++ |
T Consensus 119 ~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVa-------w 190 (588)
T 2j04_A 119 TNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIV-------W 190 (588)
T ss_dssp EECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEE-------E
T ss_pred eecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEE-------E
Confidence 6677 766 499999999999999999999999999998752 2221 134567899998 9
Q ss_pred eeCCCeEEEEEeCCeEEEEcCC----------------CCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceee
Q 001349 914 IPQGAGIKVHLRNGKTKLLNSS----------------KYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKL 977 (1094)
Q Consensus 914 spdg~~l~~~~~~g~i~l~~~~----------------~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~ 977 (1094)
+||| +++++.|+.+++|+.. ..|.+++|+++.+++++ +++|++||+.++.... ..
T Consensus 191 SPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~~~~~~~------~~ 261 (588)
T 2j04_A 191 YEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIVDYKVVLTC-PGYVHKIDLKNYSISS------LK 261 (588)
T ss_dssp ETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEETTEEEEEC-SSEEEEEETTTTEEEE------EE
T ss_pred cCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEECCEEEEEe-CCeEEEEECCCCeEEE------EE
Confidence 9999 7888889999988741 24777888866788886 7999999999887642 22
Q ss_pred cCCCCCeEEEEE--eCCccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCCEEEEEEcCCeEEEEECCCCcE
Q 001349 978 LGKANPVHALQV--HNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIR 1055 (1094)
Q Consensus 978 ~~h~~~V~sl~f--s~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd~l~sgs~dg~I~vwd~~t~~~ 1055 (1094)
.+|...|..+.| +|++..+++++.|| + ++|... .++++||..++++.|+++++|+...+.
T Consensus 262 ~gh~~~V~~va~~~s~d~~~La~a~edG-~-klw~~d---------------~~~~spd~~l~a~~d~~v~lW~~~g~~- 323 (588)
T 2j04_A 262 TGSLENFHIIPLNHEKESTILLMSNKTS-Y-KVLLED---------------ELHVTADNIIAPYLEKKFKKWSTIWNE- 323 (588)
T ss_dssp CSCCSCCCEEEETTCSSCEEEEECSSCE-E-EEEESS---------------SEEEECCCSSHHHHHHHHHHTTTTTTS-
T ss_pred cCCCceEEEEEeeeCCCCCEEEEEcCCC-C-EEEeec---------------cEEECCCceEEEEcCCEEEEEECCCCc-
Confidence 379999999999 99999999998887 7 999987 255889865555569999999976554
Q ss_pred EEEecccCCcceEEEEEcCCCCEEEEEeC
Q 001349 1056 IETLQTGTSGKVQCMALDDNEEFLVIGTS 1084 (1094)
Q Consensus 1056 ~~~l~~~h~~~I~~l~~Spdg~~L~sgs~ 1084 (1094)
+..+ .+...|.+++|||||+.+|+++.
T Consensus 324 l~~~--~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 324 FNNY--ETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp SSSS--CCEEEEEEEEECTTSSEEEEEEE
T ss_pred eeee--ccceEEEEEEECCCCCEEEEEEe
Confidence 3344 23567999999999999998874
No 120
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.92 E-value=3.7e-24 Score=244.47 Aligned_cols=219 Identities=12% Similarity=0.099 Sum_probs=169.6
Q ss_pred CEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC---------ceEEEEe
Q 001349 824 DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNE---------EIHCVQV 894 (1094)
Q Consensus 824 d~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~---------~~~~~~~ 894 (1094)
.++++|+.||+|++||+.++ +.+..+. .+.|.++.|+|+ +++++.|++|++|+.... +......
T Consensus 49 ~~l~sg~~Dg~v~iwd~~~~--~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~ 121 (343)
T 3lrv_A 49 WVCMCRCEDGALHFTQLKDS--KTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIE 121 (343)
T ss_dssp EEEEEEEETTEEEEEEESSS--SCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred CEEEEECCCCcEEEEECCCC--cEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEee
Confidence 38999999999999999998 5666665 567888999988 999999999999988752 1111111
Q ss_pred cccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC----CEEEEEEcCCeEEEEECCCCceeEE
Q 001349 895 HDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ----GKVYCGCQDGAIQEIDLATGTFATI 970 (1094)
Q Consensus 895 ~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~----~~l~sgs~Dg~I~iwDl~~~~~~~~ 970 (1094)
..+ ...|.++.+++ ..+++|+.||+|++||+++++....
T Consensus 122 ~~~-------------------------------------~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~ 164 (343)
T 3lrv_A 122 VDS-------------------------------------ANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIV 164 (343)
T ss_dssp CCC-------------------------------------SSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEE
T ss_pred cCC-------------------------------------CCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEE
Confidence 112 23344444443 2588999999999999999987532
Q ss_pred eccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEE-EEec--CCCCEEEEEEeCC--EEEEEEcCCeE
Q 001349 971 QTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMV-GSLP--TLSEVRAMVVSSE--LVYLGCKGGTV 1045 (1094)
Q Consensus 971 ~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~-~~~~--~~~~v~~l~~spd--~l~sgs~dg~I 1045 (1094)
.. ..|...|++++|+|++.++++++.|| .|++||+++++.. ..+. |...|.+++|+|+ ++++++ ++.|
T Consensus 165 ~~-----~~~~~~i~~~~~~pdg~~lasg~~dg-~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v 237 (343)
T 3lrv_A 165 HS-----AKSDVEYSSGVLHKDSLLLALYSPDG-ILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTV 237 (343)
T ss_dssp EC-----CCSSCCCCEEEECTTSCEEEEECTTS-CEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBE
T ss_pred Ee-----cCCCCceEEEEECCCCCEEEEEcCCC-EEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeE
Confidence 21 23556799999999999999999997 9999999998877 6665 5789999999998 888888 5599
Q ss_pred EEEECCCCcEEEEecc--cCCcceE--EEEEcCCCCEEEEEeC-CCcEEEEeC
Q 001349 1046 EIWDQKRQIRIETLQT--GTSGKVQ--CMALDDNEEFLVIGTS-DGRIQAWGL 1093 (1094)
Q Consensus 1046 ~vwd~~t~~~~~~l~~--~h~~~I~--~l~~Spdg~~L~sgs~-DG~I~iWdl 1093 (1094)
++||+++++.+..+.. .|...+. +++|+|+|++|++++. |+.|++|++
T Consensus 238 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~ 290 (343)
T 3lrv_A 238 VCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKF 290 (343)
T ss_dssp EEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEE
Confidence 9999999876655421 1333343 6999999999999998 999999986
No 121
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.91 E-value=5e-23 Score=243.02 Aligned_cols=235 Identities=12% Similarity=0.144 Sum_probs=187.6
Q ss_pred ccccccc-CcEEEEeeCCCCeEEEeCCc------------ceeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecC
Q 001349 778 YSPLAFE-MVKVLSNGHDSSADFWNHRE------------LVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGR 841 (1094)
Q Consensus 778 ~~~~~~d-~~~l~s~s~dg~I~vWd~~~------------~~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~ 841 (1094)
...+.++ +..+++++.||.|++|++.. ....+.+|.+.|++++|+|+ +|++|+.||+|++||+.
T Consensus 133 ~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~ 212 (430)
T 2xyi_A 133 RARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDIN 212 (430)
T ss_dssp EEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETT
T ss_pred EEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCC
Confidence 3445554 67999999999999999863 34566789999999999985 99999999999999998
Q ss_pred CCc-----ceeEEEecccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCc--eEEEEecccCccceeeeecCceEEE
Q 001349 842 GSI-----LHLIQQIREHTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEE--IHCVQVHDIKDQIQNLAVSNSILCF 913 (1094)
Q Consensus 842 t~~-----~~~~~~l~~H~~~V~sv~fsp-dg~~LaSgs~DgtI~vWdi~~~~--~~~~~~~~~~~~V~~v~~~~~~~~f 913 (1094)
++. ......+.+|...|++++|+| ++.+|++++.||+|++||++++. ........+...|.++. |
T Consensus 213 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~-------~ 285 (430)
T 2xyi_A 213 ATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLS-------F 285 (430)
T ss_dssp SCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEE-------E
T ss_pred CCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEE-------e
Confidence 731 122466779999999999999 78899999999999999999762 11112224455566665 6
Q ss_pred eeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCC-ceeEEeccceeecCCCCCeEEEEEeCC
Q 001349 914 IPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATG-TFATIQTGHRKLLGKANPVHALQVHNG 992 (1094)
Q Consensus 914 spdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~-~~~~~~~~~~~~~~h~~~V~sl~fs~~ 992 (1094)
+|++.. .+++|+.||.|++||+++. ..+ ..+.+|...|+++.|+|+
T Consensus 286 ~p~~~~---------------------------~l~tg~~dg~v~vwd~~~~~~~~------~~~~~h~~~v~~i~~sp~ 332 (430)
T 2xyi_A 286 NPYSEF---------------------------ILATGSADKTVALWDLRNLKLKL------HSFESHKDEIFQVQWSPH 332 (430)
T ss_dssp CSSCTT---------------------------EEEEEETTSEEEEEETTCTTSCS------EEEECCSSCEEEEEECSS
T ss_pred CCCCCC---------------------------EEEEEeCCCeEEEEeCCCCCCCe------EEeecCCCCEEEEEECCC
Confidence 666553 3789999999999999984 333 466778999999999998
Q ss_pred c-cEEEEEECCCCEEEEEECCC--------------CeEEEEec-CCCCEEEEEEeCC---EEEEEEcCCeEEEEECCCC
Q 001349 993 L-VYTASTSLDGAAVKMWSTSN--------------YNMVGSLP-TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQ 1053 (1094)
Q Consensus 993 ~-~~las~s~Dg~~I~iwd~~~--------------~~~~~~~~-~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~ 1053 (1094)
+ .++++++.|| .|++||+.. ...+..+. |...|.+++|+|+ ++++++.||.|+||++...
T Consensus 333 ~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 333 NETILASSGTDR-RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CTTEEEEEETTS-CCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CCCEEEEEeCCC-cEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 8 4688888886 999999986 24555555 6678999999998 7999999999999998753
No 122
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.91 E-value=7.1e-23 Score=235.32 Aligned_cols=232 Identities=9% Similarity=0.062 Sum_probs=167.9
Q ss_pred EEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeC
Q 001349 837 VWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQ 916 (1094)
Q Consensus 837 vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspd 916 (1094)
+|++.+. ..+.+...|.+.|++++|+|||++|++|+.|| +++||+.+++....... . .+..+. +.++
T Consensus 3 i~s~~~~--~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~-~~~~~~-------~~~~ 69 (355)
T 3vu4_A 3 LGSMITR--NPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--R-HLSKVR-------MLHR 69 (355)
T ss_dssp ------------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--S-CCCEEE-------ECTT
T ss_pred ccccccc--CCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--C-CeEEEE-------EcCC
Confidence 5666666 56777889999999999999999999998876 78999988643222221 1 344444 7777
Q ss_pred CCeEE-EEEeCCeEEEEcC-----------CCCceEEEEeCCEEEEEEcCCeEEEEECCCC-ceeEEeccceeecCCCCC
Q 001349 917 GAGIK-VHLRNGKTKLLNS-----------SKYPKCLALVQGKVYCGCQDGAIQEIDLATG-TFATIQTGHRKLLGKANP 983 (1094)
Q Consensus 917 g~~l~-~~~~~g~i~l~~~-----------~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~-~~~~~~~~~~~~~~h~~~ 983 (1094)
++.++ ++..++.+++|+. ...|.++.++++.++++ .|+.|++||+.++ +.+.. +.. +
T Consensus 70 ~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~-~~~~i~i~d~~~~~~~~~~------~~~---~ 139 (355)
T 3vu4_A 70 TNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVS-YGDVISVFKFGNPWKRITD------DIR---F 139 (355)
T ss_dssp SSEEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEE-ETTEEEEEESSTTCCBSSC------CEE---E
T ss_pred CCEEEEEECCccEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEE-EcCEEEEEECCCCceeeEE------ecc---C
Confidence 77774 4556689999985 34688888888877665 4889999999988 54422 211 3
Q ss_pred eEEEEEeCCccEEEE--EECCCCEEEEEECCCCe---------------E-EEEec-CCCCEEEEEEeCC--EEEEEEcC
Q 001349 984 VHALQVHNGLVYTAS--TSLDGAAVKMWSTSNYN---------------M-VGSLP-TLSEVRAMVVSSE--LVYLGCKG 1042 (1094)
Q Consensus 984 V~sl~fs~~~~~las--~s~Dg~~I~iwd~~~~~---------------~-~~~~~-~~~~v~~l~~spd--~l~sgs~d 1042 (1094)
...+++++ .+++. ++.|| .|++||+.++. + +..+. |...|.+++|+|+ ++++|+.|
T Consensus 140 ~~~~~~s~--~~la~~sg~~~g-~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d 216 (355)
T 3vu4_A 140 GGVCEFSN--GLLVYSNEFNLG-QIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQD 216 (355)
T ss_dssp EEEEEEET--TEEEEEESSCTT-CEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CceEEEEc--cEEEEeCCCcCc-EEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCC
Confidence 44556667 34444 45665 99999999865 1 45555 7889999999998 89999999
Q ss_pred Ce-EEEEECCCCcEEEEeccc-CCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1043 GT-VEIWDQKRQIRIETLQTG-TSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1043 g~-I~vwd~~t~~~~~~l~~~-h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
|+ |++||+.+++++..+..+ |.+.|++++|+|||++|++++.||+|++||+.
T Consensus 217 ~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~ 270 (355)
T 3vu4_A 217 GTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIF 270 (355)
T ss_dssp CSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESS
T ss_pred CCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEcc
Confidence 98 999999999999999645 99999999999999999999999999999973
No 123
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.91 E-value=3.1e-23 Score=241.86 Aligned_cols=254 Identities=9% Similarity=0.009 Sum_probs=169.1
Q ss_pred ccccccCcEEEEeeCCCCeEEEeCCc-------ceeecccCCCcEEEEEEeC--------C--EEEEEECCCeEEEEecC
Q 001349 779 SPLAFEMVKVLSNGHDSSADFWNHRE-------LVHVDSSENGKVLSIACFR--------D--KIFSGHSDGTIKVWTGR 841 (1094)
Q Consensus 779 ~~~~~d~~~l~s~s~dg~I~vWd~~~-------~~~~~~~h~~~V~~l~fsp--------d--~LaSgs~Dg~I~vWd~~ 841 (1094)
..+.+++..+++++.|++|++||... ....+.+|.+.|.+++|+| | +|+||+.|++|+|||+.
T Consensus 95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~ 174 (393)
T 4gq1_A 95 NSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLT 174 (393)
T ss_dssp --CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEE
T ss_pred eecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECC
Confidence 34566788999999999999999862 2345789999999999986 3 99999999999999998
Q ss_pred CCcceeEEEecccCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeE
Q 001349 842 GSILHLIQQIREHTKAVTGLAILQSG-EMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGI 920 (1094)
Q Consensus 842 t~~~~~~~~l~~H~~~V~sv~fspdg-~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l 920 (1094)
++ .++..+.+|...|.+++|+|++ .+|++|+.||+|++||+.+++...... .+........ ++++....
T Consensus 175 ~~--~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~-~~~~~~~~~~-------~s~~~~~~ 244 (393)
T 4gq1_A 175 DE--GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENS-QTELVKNPWL-------LTLNTLPL 244 (393)
T ss_dssp TT--EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-----------CSCCCS-------EEEESGGG
T ss_pred CC--ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCccccccc-ccCCcccceE-------Eecccccc
Confidence 87 6777788899999999999986 589999999999999999875221111 1111111111 11111100
Q ss_pred EEEEeCCeEEEEcCCCCceEEEEe---CCEEEEEEcCCeEEEEECCCCceeEEeccc-------------eeecCCCCCe
Q 001349 921 KVHLRNGKTKLLNSSKYPKCLALV---QGKVYCGCQDGAIQEIDLATGTFATIQTGH-------------RKLLGKANPV 984 (1094)
Q Consensus 921 ~~~~~~g~i~l~~~~~~v~~l~~s---~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~-------------~~~~~h~~~V 984 (1094)
. .......+...+.++.+. +..+++++.|+++++||+.++.....+..+ .....+...+
T Consensus 245 ~-----~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (393)
T 4gq1_A 245 V-----NTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLL 319 (393)
T ss_dssp C-----------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSS
T ss_pred e-----eeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcce
Confidence 0 001112355678888876 256999999999999999887654322111 0111122222
Q ss_pred EEEEEe--CCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEEC
Q 001349 985 HALQVH--NGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQ 1050 (1094)
Q Consensus 985 ~sl~fs--~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~ 1050 (1094)
...|+ .++.++++++.|| +|++||+.++.....+. |...|.+++|+|| +|++++.+| +.+|.+
T Consensus 320 -~~~~~~~~~~~~~~sgs~Dg-~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 320 -GACPHPRYMDYFATAHSQHG-LIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp -CCEECSSCTTEEEEEETTTT-EEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred -eEEEccCCCCEEEEEECCCC-EEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 22333 2556777777776 99999999988766655 7889999999999 899998776 555543
No 124
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.90 E-value=4.6e-22 Score=233.91 Aligned_cols=257 Identities=11% Similarity=0.103 Sum_probs=200.2
Q ss_pred EeeCCCCeEEEeCCc------ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEE-----EecccCC
Q 001349 790 SNGHDSSADFWNHRE------LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQ-----QIREHTK 856 (1094)
Q Consensus 790 s~s~dg~I~vWd~~~------~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~-----~l~~H~~ 856 (1094)
+++.++.+.+|.+.. ....+.. ...+.+++|+|+ ++++++.|++|++||+.++ +.+. .+.+|.+
T Consensus 94 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g--~~~~~~~~~~~~~~~~ 170 (433)
T 3bws_A 94 RKPEELNEKLIALDKEGITHRFISRFKT-GFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSG--QTVRLSPPEKYKKKLG 170 (433)
T ss_dssp SSGGGGTTCEEECCBTTCSEEEEEEEEC-SSCBCCCEESSSSEEEEEBTTSSSEEEEETTTC--CEEEECCCHHHHTTCC
T ss_pred cccCCCceEEEEECCCCCcceEEEEEcC-CCCceEEEEeCCCeEEEEeCCCCeEEEEECCCC--eEeeecCcccccccCC
Confidence 455666566665531 2222333 345669999986 7777888999999999988 4555 4558999
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCC
Q 001349 857 AVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSK 936 (1094)
Q Consensus 857 ~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~ 936 (1094)
.|++++|++++.++++++.|++|++||+.+++.... ...+...+.++. |+|+|+.+
T Consensus 171 ~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~-~~~~~~~~~~~~-------~~~~~~~l---------------- 226 (433)
T 3bws_A 171 FVETISIPEHNELWVSQMQANAVHVFDLKTLAYKAT-VDLTGKWSKILL-------YDPIRDLV---------------- 226 (433)
T ss_dssp EEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEE-EECSSSSEEEEE-------EETTTTEE----------------
T ss_pred ceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEE-EcCCCCCeeEEE-------EcCCCCEE----------------
Confidence 999999999999999999999999999998753222 223455566665 77777752
Q ss_pred CceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEEC--------CCCEEEE
Q 001349 937 YPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSL--------DGAAVKM 1008 (1094)
Q Consensus 937 ~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~--------Dg~~I~i 1008 (1094)
+++++.|+.|++||+.+++....+ .. ...+.+++|+|++.++++++. |+ .|++
T Consensus 227 -----------~~~~~~~~~i~~~d~~~~~~~~~~------~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg-~i~~ 287 (433)
T 3bws_A 227 -----------YCSNWISEDISVIDRKTKLEIRKT------DK-IGLPRGLLLSKDGKELYIAQFSASNQESGGG-RLGI 287 (433)
T ss_dssp -----------EEEETTTTEEEEEETTTTEEEEEC------CC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCE-EEEE
T ss_pred -----------EEEecCCCcEEEEECCCCcEEEEe------cC-CCCceEEEEcCCCCEEEEEECCCCccccCCC-eEEE
Confidence 345557999999999998876332 22 345899999999988888773 54 9999
Q ss_pred EECCCCeEEEEecCCCCEEEEEEeCC---EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeC-
Q 001349 1009 WSTSNYNMVGSLPTLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTS- 1084 (1094)
Q Consensus 1009 wd~~~~~~~~~~~~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~- 1084 (1094)
||+.+++.+..+.+...+.+++|+|+ .+++++.++.|++||+.+++.+..+. +...+.+++|+|+|+++++++.
T Consensus 288 ~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~ 365 (433)
T 3bws_A 288 YSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP--VFDKPNTIALSPDGKYLYVSCRG 365 (433)
T ss_dssp EETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEECC
T ss_pred EECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec--CCCCCCeEEEcCCCCEEEEEecC
Confidence 99999998888877778999999998 45666899999999999999888884 6678999999999999988876
Q ss_pred --------------CCcEEEEeCC
Q 001349 1085 --------------DGRIQAWGLS 1094 (1094)
Q Consensus 1085 --------------DG~I~iWdls 1094 (1094)
||.|++||+.
T Consensus 366 ~~~~~~~~~~~g~~dg~v~~~d~~ 389 (433)
T 3bws_A 366 PNHPTEGYLKKGLVLGKVYVIDTT 389 (433)
T ss_dssp CCCTTTCTTSCCSSCCEEEEEETT
T ss_pred CCccccccccccccceEEEEEECC
Confidence 5799999973
No 125
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.89 E-value=6e-21 Score=221.15 Aligned_cols=267 Identities=15% Similarity=0.179 Sum_probs=200.6
Q ss_pred cccccccCcEE-EEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EE-EEEECCCeEEEEecCCCcceeEEEe
Q 001349 778 YSPLAFEMVKV-LSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KI-FSGHSDGTIKVWTGRGSILHLIQQI 851 (1094)
Q Consensus 778 ~~~~~~d~~~l-~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~L-aSgs~Dg~I~vWd~~t~~~~~~~~l 851 (1094)
...+.+++.++ ++++.|+.|++||.. +....+..| ..+.+++|+|+ ++ ++++.|+.|++||+.++ +.+..+
T Consensus 36 ~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~-~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~--~~~~~~ 112 (391)
T 1l0q_A 36 GAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN--TVAGTV 112 (391)
T ss_dssp EEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT--EEEEEE
T ss_pred eEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECC-CCccceEECCCCCEEEEEECCCCEEEEEECCCC--eEEEEE
Confidence 45677788876 677799999999986 333444444 49999999996 55 55667799999999998 666666
Q ss_pred cccCCCeEEEEEecCCCEE-EEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEE
Q 001349 852 REHTKAVTGLAILQSGEML-YSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTK 930 (1094)
Q Consensus 852 ~~H~~~V~sv~fspdg~~L-aSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~ 930 (1094)
.. ...+.+++|+|+|+++ ++++.|++|++||+.+++.. ........+..+. |+|+|+.+
T Consensus 113 ~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~--~~~~~~~~~~~~~-------~~~dg~~l---------- 172 (391)
T 1l0q_A 113 KT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVI--NTVSVGRSPKGIA-------VTPDGTKV---------- 172 (391)
T ss_dssp EC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE--EEEECCSSEEEEE-------ECTTSSEE----------
T ss_pred eC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE--EEEecCCCcceEE-------ECCCCCEE----------
Confidence 54 4578999999999977 78888999999999987532 2222233445544 78887752
Q ss_pred EEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEE---CCCCEEE
Q 001349 931 LLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTS---LDGAAVK 1007 (1094)
Q Consensus 931 l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s---~Dg~~I~ 1007 (1094)
+++++.|+.|++||+.+++..... .+...+.+++|++++.++++++ .++ .|+
T Consensus 173 -----------------~~~~~~~~~v~~~d~~~~~~~~~~-------~~~~~~~~~~~~~~g~~l~~~~~~~~~~-~v~ 227 (391)
T 1l0q_A 173 -----------------YVANFDSMSISVIDTVTNSVIDTV-------KVEAAPSGIAVNPEGTKAYVTNVDKYFN-TVS 227 (391)
T ss_dssp -----------------EEEETTTTEEEEEETTTTEEEEEE-------ECSSEEEEEEECTTSSEEEEEEECSSCC-EEE
T ss_pred -----------------EEEeCCCCEEEEEECCCCeEEEEE-------ecCCCccceEECCCCCEEEEEecCcCCC-cEE
Confidence 356778899999999998776332 2345789999999998888877 454 999
Q ss_pred EEECCCCeEEEEecCCCCEEEEEEeCC--EE-EEEEcCCeEEEEECCCCcEEEEecccCCcceE---EEE----------
Q 001349 1008 MWSTSNYNMVGSLPTLSEVRAMVVSSE--LV-YLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQ---CMA---------- 1071 (1094)
Q Consensus 1008 iwd~~~~~~~~~~~~~~~v~~l~~spd--~l-~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~---~l~---------- 1071 (1094)
+||+.+++.+..+..+..+.+++|+|+ ++ ++++.|+.|++||+.+++.+..+. .|..+.. .+.
T Consensus 228 ~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 306 (391)
T 1l0q_A 228 MIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMA-VGKNPYASGQFIGSIPVQPVYPS 306 (391)
T ss_dssp EEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEECCSSCEEECSSCCCCCB
T ss_pred EEECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEE-CCcCCCccceeeecccccccccc
Confidence 999999999999887778999999998 55 566889999999999999888874 3433211 122
Q ss_pred --EcCCC----------CEEEEEeCCCcEEEEeC
Q 001349 1072 --LDDNE----------EFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1072 --~Spdg----------~~L~sgs~DG~I~iWdl 1093 (1094)
|+.+. -.+...+.|.++++|++
T Consensus 307 a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~ 340 (391)
T 1l0q_A 307 ADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDF 340 (391)
T ss_dssp CCEEESCCSSEEETTCCEEEEECCBSCSEEEEEC
T ss_pred cccccccccccccccceEEEEeCCCCceEEEEEC
Confidence 22221 23556667889999997
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.88 E-value=3.5e-21 Score=226.18 Aligned_cols=265 Identities=13% Similarity=0.064 Sum_probs=201.0
Q ss_pred ccccCc-EEEEee----CCC----CeEEEeC--Cc--ce--eecccCCCcEEEEEEe----------------CCEEEEE
Q 001349 781 LAFEMV-KVLSNG----HDS----SADFWNH--RE--LV--HVDSSENGKVLSIACF----------------RDKIFSG 829 (1094)
Q Consensus 781 ~~~d~~-~l~s~s----~dg----~I~vWd~--~~--~~--~~~~~h~~~V~~l~fs----------------pd~LaSg 829 (1094)
+...+. .+++|+ .+| .|++||. .+ .+ ..+.+|...+..++++ ...++.+
T Consensus 70 w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~ 149 (415)
T 2hqs_A 70 WSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYV 149 (415)
T ss_dssp HHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEE
T ss_pred HHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEE
Confidence 334444 566776 457 8999999 53 22 3467888888777766 3466666
Q ss_pred ECC------CeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCC---cEEEEECCCCceEEEEecccCcc
Q 001349 830 HSD------GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDK---TARVWSIGNEEIHCVQVHDIKDQ 900 (1094)
Q Consensus 830 s~D------g~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~Dg---tI~vWdi~~~~~~~~~~~~~~~~ 900 (1094)
+.+ ++|++||+.++ ....+.+|...|.+++|+|||++|++++.|+ +|++||+.+++... ...+...
T Consensus 150 s~~~~~~~~~~i~i~d~~g~---~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~--l~~~~~~ 224 (415)
T 2hqs_A 150 VQTNGGQFPYELRVSDYDGY---NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--VASFPRH 224 (415)
T ss_dssp EECSSSSCCEEEEEEETTSC---SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE--EECCSSC
T ss_pred EecCCCCccceEEEEcCCCC---CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE--eecCCCc
Confidence 554 79999999865 4567778999999999999999999999885 99999999986543 3334556
Q ss_pred ceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCC--eEEEEECCCCceeEEeccceeec
Q 001349 901 IQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDG--AIQEIDLATGTFATIQTGHRKLL 978 (1094)
Q Consensus 901 V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg--~I~iwDl~~~~~~~~~~~~~~~~ 978 (1094)
+.++. |+|||+.++ ++++.|+ .|++||+.+++.. .+.
T Consensus 225 ~~~~~-------~spdg~~la---------------------------~~~~~~g~~~i~~~d~~~~~~~-------~l~ 263 (415)
T 2hqs_A 225 NGAPA-------FSPDGSKLA---------------------------FALSKTGSLNLYVMDLASGQIR-------QVT 263 (415)
T ss_dssp EEEEE-------ECTTSSEEE---------------------------EEECTTSSCEEEEEETTTCCEE-------ECC
T ss_pred ccCEE-------EcCCCCEEE---------------------------EEEecCCCceEEEEECCCCCEE-------eCc
Confidence 66666 999998643 2444444 4999999988753 455
Q ss_pred CCCCCeEEEEEeCCccEEEEEECCCC--EEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcC---CeEEEEECC
Q 001349 979 GKANPVHALQVHNGLVYTASTSLDGA--AVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKG---GTVEIWDQK 1051 (1094)
Q Consensus 979 ~h~~~V~sl~fs~~~~~las~s~Dg~--~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~d---g~I~vwd~~ 1051 (1094)
.|...+.++.|+|++.+++.++.+++ .|.+||+.+++......+...+..++|+|| ++++++.+ +.|++||+.
T Consensus 264 ~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~ 343 (415)
T 2hqs_A 264 DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA 343 (415)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETT
T ss_pred CCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECC
Confidence 67788999999999998888876433 688889988775443346678889999998 67776653 589999999
Q ss_pred CCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCC---cEEEEeCC
Q 001349 1052 RQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDG---RIQAWGLS 1094 (1094)
Q Consensus 1052 t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG---~I~iWdls 1094 (1094)
+++.. .+ ..|. .+.+++|+|||++|++++.++ .|++||+.
T Consensus 344 ~~~~~-~l-~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~ 386 (415)
T 2hqs_A 344 TGGVQ-VL-SSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD 386 (415)
T ss_dssp TCCEE-EC-CCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred CCCEE-Ee-cCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC
Confidence 98874 45 3444 899999999999999988877 79999863
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.88 E-value=2.6e-20 Score=226.02 Aligned_cols=299 Identities=10% Similarity=0.054 Sum_probs=222.2
Q ss_pred ccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEec--CCCcceeEEEeccc
Q 001349 781 LAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTG--RGSILHLIQQIREH 854 (1094)
Q Consensus 781 ~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~--~t~~~~~~~~l~~H 854 (1094)
+.+++..+++++.|++|.+||.. +....+..+.. +.+++|+|| ++++++.|++|++||+ .++ +.+.++. +
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~--~~~~~i~-~ 220 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEP--TKVAEIK-I 220 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSC--EEEEEEE-C
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCC--cEEEEEe-c
Confidence 55678889999999999999987 34555553333 899999997 9999999999999999 777 6778876 5
Q ss_pred CCCeEEEEEec----CCCEEEEEeC-CCcEEEEECCCCceE-EEEecc--------c-CccceeeeecCceEEEeeCCCe
Q 001349 855 TKAVTGLAILQ----SGEMLYSGSL-DKTARVWSIGNEEIH-CVQVHD--------I-KDQIQNLAVSNSILCFIPQGAG 919 (1094)
Q Consensus 855 ~~~V~sv~fsp----dg~~LaSgs~-DgtI~vWdi~~~~~~-~~~~~~--------~-~~~V~~v~~~~~~~~fspdg~~ 919 (1094)
...+..++|+| ||+++++++. +++|.+||..+++.. .+.... + ...+..+. ++|++..
T Consensus 221 g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~-------~s~~~~~ 293 (543)
T 1nir_A 221 GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAII-------ASHEHPE 293 (543)
T ss_dssp CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEE-------ECSSSSE
T ss_pred CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEE-------ECCCCCE
Confidence 56789999999 9999999985 899999999987632 222211 1 11344444 8887776
Q ss_pred EEEE-EeCCeEEEEcCC-------------CCceEEEEeC-C-EEEEE-EcCCeEEEEECCCCceeEEeccceeecCCCC
Q 001349 920 IKVH-LRNGKTKLLNSS-------------KYPKCLALVQ-G-KVYCG-CQDGAIQEIDLATGTFATIQTGHRKLLGKAN 982 (1094)
Q Consensus 920 l~~~-~~~g~i~l~~~~-------------~~v~~l~~s~-~-~l~sg-s~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~ 982 (1094)
+++. ..++.+.+|+.. ..+..+.|++ + +++++ ..+++|.+||..+++....+... ...|..
T Consensus 294 ~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g--~~ph~g 371 (543)
T 1nir_A 294 FIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVG--KTPHPG 371 (543)
T ss_dssp EEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS--SSBCCT
T ss_pred EEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccC--CCCCCC
Confidence 5544 445788888753 3455677875 3 45554 46899999999999887544311 123544
Q ss_pred CeEEEEEeCC-ccEEEEEECCCCEEEEEECCC-------CeEEEEec-CCCCEEEEEEeCC--EEEEEE-------cCCe
Q 001349 983 PVHALQVHNG-LVYTASTSLDGAAVKMWSTSN-------YNMVGSLP-TLSEVRAMVVSSE--LVYLGC-------KGGT 1044 (1094)
Q Consensus 983 ~V~sl~fs~~-~~~las~s~Dg~~I~iwd~~~-------~~~~~~~~-~~~~v~~l~~spd--~l~sgs-------~dg~ 1044 (1094)
....+ ++|+ +.++++++.++++|.+||+.+ +++++++. +...+..+.++|| ++++++ .+++
T Consensus 372 ~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~ 450 (543)
T 1nir_A 372 RGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQS 450 (543)
T ss_dssp TCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTC
T ss_pred CCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCce
Confidence 43333 4666 777777764334999999998 89999998 5567788999999 788876 2779
Q ss_pred EEEEECCCCcEE-EEec-------ccCCcceEEEEEcCCCCEEEEEe-----CCCcEEEEeC
Q 001349 1045 VEIWDQKRQIRI-ETLQ-------TGTSGKVQCMALDDNEEFLVIGT-----SDGRIQAWGL 1093 (1094)
Q Consensus 1045 I~vwd~~t~~~~-~~l~-------~~h~~~I~~l~~Spdg~~L~sgs-----~DG~I~iWdl 1093 (1094)
|.|||+.+++.. ..+. ..+...+..+.|+|||+.++++. .|+.|.|||.
T Consensus 451 v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~ 512 (543)
T 1nir_A 451 VAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDD 512 (543)
T ss_dssp EEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEET
T ss_pred EEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEEC
Confidence 999999999877 4442 24567899999999999988763 4799999996
No 128
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.87 E-value=1.3e-20 Score=209.54 Aligned_cols=224 Identities=13% Similarity=0.076 Sum_probs=154.0
Q ss_pred cccccccc----CcEEEEeeCCCCeEEEeCCcceeecccCCCcEEEEEEeCCEEEEEE---CCCeEEEEecC-CCcceeE
Q 001349 777 KYSPLAFE----MVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRDKIFSGH---SDGTIKVWTGR-GSILHLI 848 (1094)
Q Consensus 777 ~~~~~~~d----~~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~fspd~LaSgs---~Dg~I~vWd~~-t~~~~~~ 848 (1094)
+...+++| +.++++++.+ +++|++ ....+++++ .|++|++|++. ++ +.+
T Consensus 115 ~sla~spd~~~~~~~l~s~g~~--~~v~~l-------------------~~g~lv~ss~~g~d~~V~~~~~s~dG--~~~ 171 (356)
T 2w18_A 115 RALFCSSDDESEKQVLLKSGNI--KAVLGL-------------------TKRRLVSSSGTLSDQQVEVMTFAEDG--GGK 171 (356)
T ss_dssp EEECC------CCEEEEEEEEE--EEEEEE-------------------TTTEEEEEESSSTTCEEEEEEECTTS--CEE
T ss_pred EEEEECCCccccccEEEeCCCe--EEEEec-------------------CCCcEEEecccCCCCcEEEEEECCCC--cee
Confidence 34555666 6667766643 555643 122444444 49999999994 46 677
Q ss_pred EEecccCCCeEEEEEec---CCCEEEEEeCCCcEEEEECCCCce-EEEEecc-cCccceeeeecCceEEEeeCCCeEEEE
Q 001349 849 QQIREHTKAVTGLAILQ---SGEMLYSGSLDKTARVWSIGNEEI-HCVQVHD-IKDQIQNLAVSNSILCFIPQGAGIKVH 923 (1094)
Q Consensus 849 ~~l~~H~~~V~sv~fsp---dg~~LaSgs~DgtI~vWdi~~~~~-~~~~~~~-~~~~V~~v~~~~~~~~fspdg~~l~~~ 923 (1094)
..+.+|...+..++|++ ++.+|+|||.|++|+|||+.+|+. +.+..+. +...+.+++ |+|+|..+++.
T Consensus 172 ~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~va-------fSpdG~~lvs~ 244 (356)
T 2w18_A 172 ENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKA-------YSEMGLLFIVL 244 (356)
T ss_dssp EEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEE-------EEETTEEEEEE
T ss_pred eeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEE-------ECCCCCEEEEe
Confidence 88889999999999999 789999999999999999999963 3332111 122344444 99999887766
Q ss_pred EeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCC
Q 001349 924 LRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG 1003 (1094)
Q Consensus 924 ~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg 1003 (1094)
..+.. .| .+++|+.|++|++||..+++.+..+.... ..+|...+.+..+ ++.++++++.|+
T Consensus 245 s~~~~--~w--------------~laSGs~D~tIklWd~~tgk~l~v~~~~~-p~Gh~~~~lsg~~--sg~~lASgS~Dg 305 (356)
T 2w18_A 245 SHPCA--KE--------------SESLRSPVFQLIVINPKTTLSVGVMLYCL-PPGQAGRFLEGDV--KDHCAAAILTSG 305 (356)
T ss_dssp C----------------------------CCEEEEEEETTTTEEEEEEEECC-CTTCCCCEEEEEE--ETTEEEEEETTS
T ss_pred ccCCC--cc--------------eeeccCCCcEEEEEECCCCEEEEEEEeec-cCCCcceeEcccc--CCCEEEEEcCCC
Confidence 54322 12 37899999999999999998774332100 2366655444443 377899999996
Q ss_pred CEEEEEECCCCeEEEEec-CCCCE-EEEEEeCC--EEEEEEcCCeEEEEEC
Q 001349 1004 AAVKMWSTSNYNMVGSLP-TLSEV-RAMVVSSE--LVYLGCKGGTVEIWDQ 1050 (1094)
Q Consensus 1004 ~~I~iwd~~~~~~~~~~~-~~~~v-~~l~~spd--~l~sgs~dg~I~vwd~ 1050 (1094)
+|+|||+.+++++.++. |...+ ..++|+|| ++++|+.|++|+|||.
T Consensus 306 -TIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 306 -TIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp -CEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred -cEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 99999999999999998 44444 46899998 8999999999999995
No 129
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.85 E-value=2.8e-19 Score=201.95 Aligned_cols=269 Identities=13% Similarity=0.150 Sum_probs=191.9
Q ss_pred CcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEEC-CCeEEEEecCCCccee-EEEecccCCCe
Q 001349 785 MVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHS-DGTIKVWTGRGSILHL-IQQIREHTKAV 858 (1094)
Q Consensus 785 ~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~-Dg~I~vWd~~t~~~~~-~~~l~~H~~~V 858 (1094)
...+++++.++.|.+||.. +.......+...+ +++|+|+ ++++++. ++.|.+||..++ .. ...+..+..++
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~--~~~~~~~~~~~~~~ 86 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLE--PPKVVAIQEGQSSM 86 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSS--SCEEEEEEECSSCC
T ss_pred CEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCC--ceeEEecccCCCCc
Confidence 3357888899999999987 3444445556667 9999996 5555554 899999999998 44 66676677766
Q ss_pred EEEEEecCCCEEEEEeCCC---cEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCC
Q 001349 859 TGLAILQSGEMLYSGSLDK---TARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS 935 (1094)
Q Consensus 859 ~sv~fspdg~~LaSgs~Dg---tI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~ 935 (1094)
.+++|+|+|++++++..++ +|.+||+.+++... ..........+. |+|+|+.+
T Consensus 87 ~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~--~~~~~~~~~~~~-------~spdg~~l--------------- 142 (331)
T 3u4y_A 87 ADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFIS--TIPIPYDAVGIA-------ISPNGNGL--------------- 142 (331)
T ss_dssp CCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEE--EEECCTTEEEEE-------ECTTSSCE---------------
T ss_pred cceEECCCCCEEEEecCCCCcccEEEEECCCCCeEE--EEECCCCccceE-------ECCCCCEE---------------
Confidence 6699999999999555553 89999999885322 222233344444 88888753
Q ss_pred CCceEEEEeCCEEEEEEcCCe-EEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCC
Q 001349 936 KYPKCLALVQGKVYCGCQDGA-IQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNY 1014 (1094)
Q Consensus 936 ~~v~~l~~s~~~l~sgs~Dg~-I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~ 1014 (1094)
++++..++. |.+|++.......... ... ......+..++|+|++.+++.++..++.|.+||+.++
T Consensus 143 ------------~~~~~~~~~~i~~~~~~~~g~~~~~~-~~~-~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 208 (331)
T 3u4y_A 143 ------------ILIDRSSANTVRRFKIDADGVLFDTG-QEF-ISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNP 208 (331)
T ss_dssp ------------EEEEETTTTEEEEEEECTTCCEEEEE-EEE-ECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSST
T ss_pred ------------EEEecCCCceEEEEEECCCCcEeecC-Ccc-ccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 344455577 8999987654332221 112 2334568999999999866665554459999999998
Q ss_pred eE---EEEecCCCCEEEEEEeCC--EEEEEE-cCCeEEEEECCCCcE--EEEeccc---CCc---ceEEEEEcCCCCEEE
Q 001349 1015 NM---VGSLPTLSEVRAMVVSSE--LVYLGC-KGGTVEIWDQKRQIR--IETLQTG---TSG---KVQCMALDDNEEFLV 1080 (1094)
Q Consensus 1015 ~~---~~~~~~~~~v~~l~~spd--~l~sgs-~dg~I~vwd~~t~~~--~~~l~~~---h~~---~I~~l~~Spdg~~L~ 1080 (1094)
+. +..+.....+..++|+|| ++++++ .++.|.+||..+++. +..+... +.. .+..++|+|||++|+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 288 (331)
T 3u4y_A 209 ENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLF 288 (331)
T ss_dssp TSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEE
T ss_pred cccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEE
Confidence 88 888887788889999998 565554 578899999999887 4444211 112 235689999999886
Q ss_pred EEe-CCCcEEEEeCC
Q 001349 1081 IGT-SDGRIQAWGLS 1094 (1094)
Q Consensus 1081 sgs-~DG~I~iWdls 1094 (1094)
+++ .++.|.+||++
T Consensus 289 v~~~~~~~v~v~d~~ 303 (331)
T 3u4y_A 289 ISANISRELKVFTIS 303 (331)
T ss_dssp EEETTTTEEEEEETT
T ss_pred EecCCCCcEEEEEec
Confidence 655 46799999974
No 130
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.84 E-value=8.5e-19 Score=198.22 Aligned_cols=267 Identities=11% Similarity=0.199 Sum_probs=185.7
Q ss_pred EEEEeeCCCCeEEEeCC---cc-eeecccCCCcEEEEEEeCC--EEEEEECC-CeEEEEecC--CCcceeEEEecccCCC
Q 001349 787 KVLSNGHDSSADFWNHR---EL-VHVDSSENGKVLSIACFRD--KIFSGHSD-GTIKVWTGR--GSILHLIQQIREHTKA 857 (1094)
Q Consensus 787 ~l~s~s~dg~I~vWd~~---~~-~~~~~~h~~~V~~l~fspd--~LaSgs~D-g~I~vWd~~--t~~~~~~~~l~~H~~~ 857 (1094)
.+++++.|+.|++|+.. .. ......|...+.+++|+|+ +|++++.+ +.|.+|++. ++....+..+..+. .
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~ 85 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-S 85 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-C
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-C
Confidence 45555789999999985 11 1222457788999999997 78888876 999999998 66555566665544 7
Q ss_pred eEEEEEecCCCEEEEEeC-CCcEEEEECCCCc-eEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCC
Q 001349 858 VTGLAILQSGEMLYSGSL-DKTARVWSIGNEE-IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS 935 (1094)
Q Consensus 858 V~sv~fspdg~~LaSgs~-DgtI~vWdi~~~~-~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~ 935 (1094)
+..++|+|+|+++++++. ++.|.+||+..+. ............+..+. |+|+|+.
T Consensus 86 ~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-------~s~dg~~---------------- 142 (343)
T 1ri6_A 86 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSAN-------ISPDNRT---------------- 142 (343)
T ss_dssp CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCE-------ECTTSSE----------------
T ss_pred CcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEE-------ECCCCCE----------------
Confidence 899999999998877665 8899999995432 22333333333444444 8888875
Q ss_pred CCceEEEEeCCEEEEEE-cCCeEEEEECCC-CceeEEeccceeec-CCCCCeEEEEEeCCccEEEEEECCCCEEEEEECC
Q 001349 936 KYPKCLALVQGKVYCGC-QDGAIQEIDLAT-GTFATIQTGHRKLL-GKANPVHALQVHNGLVYTASTSLDGAAVKMWSTS 1012 (1094)
Q Consensus 936 ~~v~~l~~s~~~l~sgs-~Dg~I~iwDl~~-~~~~~~~~~~~~~~-~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~ 1012 (1094)
+++++ .++.|.+||+.+ ++....... ... .....+..++|+|++.+++.++..++.|.+||+.
T Consensus 143 ------------l~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~ 208 (343)
T 1ri6_A 143 ------------LWVPALKQDRICLFTVSDDGHLVAQDPA--EVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELK 208 (343)
T ss_dssp ------------EEEEEGGGTEEEEEEECTTSCEEEEEEE--EEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESS
T ss_pred ------------EEEecCCCCEEEEEEecCCCceeeeccc--ccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 44555 789999999987 654322100 111 2235788999999998776665444599999995
Q ss_pred C--CeE--EEEec---C----CCCEEEEEEeCC--EEE-EEEcCCeEEEEECC--C--CcEEEEecccCCcceEEEEEcC
Q 001349 1013 N--YNM--VGSLP---T----LSEVRAMVVSSE--LVY-LGCKGGTVEIWDQK--R--QIRIETLQTGTSGKVQCMALDD 1074 (1094)
Q Consensus 1013 ~--~~~--~~~~~---~----~~~v~~l~~spd--~l~-sgs~dg~I~vwd~~--t--~~~~~~l~~~h~~~I~~l~~Sp 1074 (1094)
. +.. ...+. . ...+..++|+|+ +++ ++..++.|++||+. + .+.+..+. .+. .+.+++|+|
T Consensus 209 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~-~~~-~~~~~~~s~ 286 (343)
T 1ri6_A 209 DPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP-TET-QPRGFNVDH 286 (343)
T ss_dssp CTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE-CSS-SCCCEEECT
T ss_pred CCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeec-CCC-ccceEEECC
Confidence 3 432 22222 1 245778999998 565 44578999999998 3 34555553 333 389999999
Q ss_pred CCCEEEEEe-CCCcEEEEeC
Q 001349 1075 NEEFLVIGT-SDGRIQAWGL 1093 (1094)
Q Consensus 1075 dg~~L~sgs-~DG~I~iWdl 1093 (1094)
||++|++++ .++.|.+|++
T Consensus 287 dg~~l~~~~~~~~~v~v~~~ 306 (343)
T 1ri6_A 287 SGKYLIAAGQKSHHISVYEI 306 (343)
T ss_dssp TSSEEEEECTTTCEEEEEEE
T ss_pred CCCEEEEecCCCCeEEEEEE
Confidence 999888887 6899999964
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.84 E-value=6.8e-19 Score=206.63 Aligned_cols=242 Identities=12% Similarity=0.097 Sum_probs=186.7
Q ss_pred CcEEEEeeCC------CCeEEEeCC-cceeecccCCCcEEEEEEeCC--EEEEEECCC---eEEEEecCCCcceeEEEec
Q 001349 785 MVKVLSNGHD------SSADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSDG---TIKVWTGRGSILHLIQQIR 852 (1094)
Q Consensus 785 ~~~l~s~s~d------g~I~vWd~~-~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg---~I~vWd~~t~~~~~~~~l~ 852 (1094)
+.++++++.+ +.|++||.. .....+.+|.+.|.+++|+|| .|++++.|+ .|++||+.++ +. ..+.
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg--~~-~~l~ 219 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG--AV-RQVA 219 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC--CE-EEEE
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC--cE-EEee
Confidence 5566665554 799999987 345677789999999999997 899998885 9999999998 33 3566
Q ss_pred ccCCCeEEEEEecCCCEEE-EEeCCCc--EEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeE
Q 001349 853 EHTKAVTGLAILQSGEMLY-SGSLDKT--ARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKT 929 (1094)
Q Consensus 853 ~H~~~V~sv~fspdg~~La-Sgs~Dgt--I~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i 929 (1094)
.|.+.+.+++|+|||++|+ +++.|+. |++||+.+++.. ....+...+.++. |+|||+.+
T Consensus 220 ~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~--~l~~~~~~~~~~~-------~spdg~~l--------- 281 (415)
T 2hqs_A 220 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR--QVTDGRSNNTEPT-------WFPDSQNL--------- 281 (415)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE--ECCCCSSCEEEEE-------ECTTSSEE---------
T ss_pred cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE--eCcCCCCcccceE-------ECCCCCEE---------
Confidence 7888999999999999888 6766665 999999987643 3344455666666 89999864
Q ss_pred EEEcCCCCceEEEEeCCEEEEEEc-CC--eEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCC--C
Q 001349 930 KLLNSSKYPKCLALVQGKVYCGCQ-DG--AIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG--A 1004 (1094)
Q Consensus 930 ~l~~~~~~v~~l~~s~~~l~sgs~-Dg--~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg--~ 1004 (1094)
++++. ++ .|.+||+.++... .+..|...+.+++|+|++.+++.++.++ .
T Consensus 282 -------------------~~~s~~~g~~~i~~~d~~~~~~~-------~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~ 335 (415)
T 2hqs_A 282 -------------------AFTSDQAGRPQVYKVNINGGAPQ-------RITWEGSQNQDADVSSDGKFMVMVSSNGGQQ 335 (415)
T ss_dssp -------------------EEEECTTSSCEEEEEETTSSCCE-------ECCCSSSEEEEEEECTTSSEEEEEEECSSCE
T ss_pred -------------------EEEECCCCCcEEEEEECCCCCEE-------EEecCCCcccCeEECCCCCEEEEEECcCCce
Confidence 33443 34 6778899887643 3344566788999999999998887652 3
Q ss_pred EEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcCC---eEEEEECCCCcEEEEecccCCcceEEEEEcCCC
Q 001349 1005 AVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGG---TVEIWDQKRQIRIETLQTGTSGKVQCMALDDNE 1076 (1094)
Q Consensus 1005 ~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg---~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg 1076 (1094)
.|.+||+.+++.. .+..+..+.+++|+|| ++++++.++ .|++||+.. .....+ .+|.+.|++++|+|.-
T Consensus 336 ~i~~~d~~~~~~~-~l~~~~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g-~~~~~l-~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 336 HIAKQDLATGGVQ-VLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG-RFKARL-PATDGQVKFPAWSPYL 409 (415)
T ss_dssp EEEEEETTTCCEE-ECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTS-CCEEEC-CCSSSEEEEEEECCCC
T ss_pred EEEEEECCCCCEE-EecCCCCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCC-CcEEEe-eCCCCCCcCCcccccc
Confidence 8999999988774 4544448999999998 677777666 899999874 456667 5788999999999964
No 132
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.84 E-value=6.4e-19 Score=213.86 Aligned_cols=255 Identities=11% Similarity=0.080 Sum_probs=196.9
Q ss_pred EeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEC--CCCceEEEEecc
Q 001349 821 CFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSI--GNEEIHCVQVHD 896 (1094)
Q Consensus 821 fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi--~~~~~~~~~~~~ 896 (1094)
|+|+ ++++++.|++|.+||..++ +++.++..+.. +..++|+|||++|++++.|++|++||+ .+++ .+....
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~--~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~--~~~~i~ 219 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSK--KIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT--KVAEIK 219 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTC--CEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE--EEEEEE
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCc--eEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCc--EEEEEe
Confidence 6665 8888999999999999999 67888874333 899999999999999999999999999 6654 333333
Q ss_pred cCccceeeeecCceEEEee----CCCeEEEEE-eCCeEEEEcCCC-----------------------CceEEEEeC--C
Q 001349 897 IKDQIQNLAVSNSILCFIP----QGAGIKVHL-RNGKTKLLNSSK-----------------------YPKCLALVQ--G 946 (1094)
Q Consensus 897 ~~~~V~~v~~~~~~~~fsp----dg~~l~~~~-~~g~i~l~~~~~-----------------------~v~~l~~s~--~ 946 (1094)
....+..++ |+| ||+++++++ .++.+.+|+... .+..+.+++ +
T Consensus 220 ~g~~p~~va-------~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~ 292 (543)
T 1nir_A 220 IGIEARSVE-------SSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHP 292 (543)
T ss_dssp CCSEEEEEE-------ECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSS
T ss_pred cCCCcceEE-------eCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCC
Confidence 444556665 999 999998887 479999997421 355667764 2
Q ss_pred -EEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec----
Q 001349 947 -KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP---- 1021 (1094)
Q Consensus 947 -~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~---- 1021 (1094)
.+++...++.|.+||+.+++.... .. ..+...+..+.|+|++.++++++.++++|.+||+.+++++..+.
T Consensus 293 ~~~vs~~~~g~i~vvd~~~~~~l~~----~~-i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ 367 (543)
T 1nir_A 293 EFIVNVKETGKVLLVNYKDIDNLTV----TS-IGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKT 367 (543)
T ss_dssp EEEEEETTTTEEEEEECTTSSSCEE----EE-EECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS
T ss_pred EEEEEECCCCeEEEEEecCCCccee----EE-eccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCC
Confidence 366777899999999988765431 11 23456688899999999877666544599999999999988876
Q ss_pred -CCCCEEEEEEeCC---EEEEEE-cCCeEEEEECCC-------CcEEEEecccCCcceEEEEEcCCCCEEEEEe------
Q 001349 1022 -TLSEVRAMVVSSE---LVYLGC-KGGTVEIWDQKR-------QIRIETLQTGTSGKVQCMALDDNEEFLVIGT------ 1083 (1094)
Q Consensus 1022 -~~~~v~~l~~spd---~l~sgs-~dg~I~vwd~~t-------~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs------ 1083 (1094)
|.+....+ ++|+ .++++. .|++|.|||+.+ ++++.++. +|.+.+..++|+|||++|++++
T Consensus 368 ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~-~~g~~~~~v~~~pdg~~l~v~~~~~~~~ 445 (543)
T 1nir_A 368 PHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQ-GQGGGSLFIKTHPKSSHLYVDTTFNPDA 445 (543)
T ss_dssp BCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE-CSCSCCCCEECCTTCCEEEECCTTCSSH
T ss_pred CCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEE-cCCCCceEEEcCCCCCcEEEecCCCCCc
Confidence 33333333 4666 455554 589999999998 89999994 7888889999999999999987
Q ss_pred -CCCcEEEEeCC
Q 001349 1084 -SDGRIQAWGLS 1094 (1094)
Q Consensus 1084 -~DG~I~iWdls 1094 (1094)
.+++|.+||+.
T Consensus 446 ~~~~~v~v~d~~ 457 (543)
T 1nir_A 446 RISQSVAVFDLK 457 (543)
T ss_dssp HHHTCEEEEETT
T ss_pred ccCceEEEEECC
Confidence 37799999974
No 133
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.82 E-value=6.4e-19 Score=193.98 Aligned_cols=249 Identities=12% Similarity=0.058 Sum_probs=180.9
Q ss_pred EeeCCCCeEEEeCCc-ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCC-CcceeEEEeccc-CCCeEEEEEe
Q 001349 790 SNGHDSSADFWNHRE-LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRG-SILHLIQQIREH-TKAVTGLAIL 864 (1094)
Q Consensus 790 s~s~dg~I~vWd~~~-~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t-~~~~~~~~l~~H-~~~V~sv~fs 864 (1094)
.++.|+.|++||... ....+..|.+.|.+++|+|+ +|++++ ++.|++||+.+ + ........| ...|.+++|+
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~s 93 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDP--SPEKVDTGFATICNNDHGIS 93 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCC--SCEECCCTTCCCBCSCCEEC
T ss_pred CCCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCC--CceEeccccccccccceEEC
Confidence 456789999999873 34456678999999999997 777776 88999999998 7 455555555 4778999999
Q ss_pred cCCCEEEEEe--CCCcEEEEEC--CCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceE
Q 001349 865 QSGEMLYSGS--LDKTARVWSI--GNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKC 940 (1094)
Q Consensus 865 pdg~~LaSgs--~DgtI~vWdi--~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~ 940 (1094)
|||++|++++ .++.++||.+ .++....+ .....+..+. |+|+|+.+
T Consensus 94 pdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~-------~spdg~~l-------------------- 143 (297)
T 2ojh_A 94 PDGALYAISDKVEFGKSAIYLLPSTGGTPRLM---TKNLPSYWHG-------WSPDGKSF-------------------- 143 (297)
T ss_dssp TTSSEEEEEECTTTSSCEEEEEETTCCCCEEC---CSSSSEEEEE-------ECTTSSEE--------------------
T ss_pred CCCCEEEEEEeCCCCcceEEEEECCCCceEEe---ecCCCccceE-------ECCCCCEE--------------------
Confidence 9999999999 3455666654 45432221 1122344444 88888763
Q ss_pred EEEeCCEEEEEEcCCeEEEEECC--CCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECC-CCeEE
Q 001349 941 LALVQGKVYCGCQDGAIQEIDLA--TGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTS-NYNMV 1017 (1094)
Q Consensus 941 l~~s~~~l~sgs~Dg~I~iwDl~--~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~-~~~~~ 1017 (1094)
+++++.|+.+++|++. ++.. ..+..|...+.++.|+|++.+++.++..++.+++|++. .+...
T Consensus 144 -------~~~~~~~~~~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~ 209 (297)
T 2ojh_A 144 -------TYCGIRDQVFDIYSMDIDSGVE-------TRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSV 209 (297)
T ss_dssp -------EEEEEETTEEEEEEEETTTCCE-------EECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCE
T ss_pred -------EEEECCCCceEEEEEECCCCcc-------eEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCc
Confidence 3466778888888853 3433 34456677899999999999887776433489999876 44455
Q ss_pred EEec-CCCCEEEEEEeCC--EEEEEEcC-----------CeEEEEECCCCcEE--EEecccCCcceEEEEEcCCCCEEEE
Q 001349 1018 GSLP-TLSEVRAMVVSSE--LVYLGCKG-----------GTVEIWDQKRQIRI--ETLQTGTSGKVQCMALDDNEEFLVI 1081 (1094)
Q Consensus 1018 ~~~~-~~~~v~~l~~spd--~l~sgs~d-----------g~I~vwd~~t~~~~--~~l~~~h~~~I~~l~~Spdg~~L~s 1081 (1094)
..+. +...+..+.|+|+ ++++++.+ +.|++||+.+++.. ..+ .+|...+.+++|+|||++|++
T Consensus 210 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~ 288 (297)
T 2ojh_A 210 ERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDL-FGGQGTMNSPNWSPDGDEFAY 288 (297)
T ss_dssp EECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEE-EESTTTSCSCCBCTTSSEEEE
T ss_pred EEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeecc-CCCCcccccceECCCCCEEEE
Confidence 5555 5667889999998 67776654 56999999988653 333 367788999999999999988
Q ss_pred EeCCC
Q 001349 1082 GTSDG 1086 (1094)
Q Consensus 1082 gs~DG 1086 (1094)
++.|.
T Consensus 289 ~~~~~ 293 (297)
T 2ojh_A 289 VRYFP 293 (297)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 87654
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.82 E-value=1.4e-18 Score=219.34 Aligned_cols=308 Identities=11% Similarity=0.065 Sum_probs=211.3
Q ss_pred cccccccccCcEEEEeeC-CC-----CeEEEeCCc--ceeecccCC------------------------CcEEEEEEeC
Q 001349 776 RKYSPLAFEMVKVLSNGH-DS-----SADFWNHRE--LVHVDSSEN------------------------GKVLSIACFR 823 (1094)
Q Consensus 776 ~~~~~~~~d~~~l~s~s~-dg-----~I~vWd~~~--~~~~~~~h~------------------------~~V~~l~fsp 823 (1094)
.....+++||+++++++. |+ .|.+||..+ .......|. ..|.+++|+|
T Consensus 39 ~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Sp 118 (741)
T 2ecf_A 39 LMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSP 118 (741)
T ss_dssp CEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECT
T ss_pred CCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECC
Confidence 345678889999999998 88 899999873 333333332 2378999999
Q ss_pred C--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccc
Q 001349 824 D--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQI 901 (1094)
Q Consensus 824 d--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V 901 (1094)
| +|++++. ++|++||+.++.......+..|...+..++|||||++|+.++. +.|++||+.+++...+.... ...+
T Consensus 119 Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~-~~~~ 195 (741)
T 2ecf_A 119 DAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADG-STTI 195 (741)
T ss_dssp TSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCCC-CSSE
T ss_pred CCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCC-ccce
Confidence 7 7888776 9999999988710034456778889999999999999999885 68999999987543322211 1111
Q ss_pred ee-e--------eecCceEEEeeCCCeEEEEEeCC---------------------------------eEEEEcCCC---
Q 001349 902 QN-L--------AVSNSILCFIPQGAGIKVHLRNG---------------------------------KTKLLNSSK--- 936 (1094)
Q Consensus 902 ~~-v--------~~~~~~~~fspdg~~l~~~~~~g---------------------------------~i~l~~~~~--- 936 (1094)
.. + ......+.|+|||+.+++...++ .+.+|+..+
T Consensus 196 ~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 275 (741)
T 2ecf_A 196 GNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQ 275 (741)
T ss_dssp EESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCC
T ss_pred eccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCc
Confidence 00 0 00012345999999999887664 666777433
Q ss_pred ------------CceEEEEeC--CEEEEEEc-----CCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEE
Q 001349 937 ------------YPKCLALVQ--GKVYCGCQ-----DGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTA 997 (1094)
Q Consensus 937 ------------~v~~l~~s~--~~l~sgs~-----Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~la 997 (1094)
.+..+.| + ..|++++. ++.|.+||+.+++......... .+....+..+.|+|++.+++
T Consensus 276 ~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~~~~~~~~spdg~~~~ 352 (741)
T 2ecf_A 276 TQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETS--PTWVPLHNSLRFLDDGSILW 352 (741)
T ss_dssp CEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEEC--SSCCCCCSCCEECTTSCEEE
T ss_pred eEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCC--CCcCCcCCceEECCCCeEEE
Confidence 2345666 4 35665543 5689999999998764432110 11111456889999999888
Q ss_pred EEECCCCEEEEEECC-CCeEEEEec-CCCCEEEE-EEeCC--EE-EEEEcCC--eEEEEECCC-CcEEEEecccCCcceE
Q 001349 998 STSLDGAAVKMWSTS-NYNMVGSLP-TLSEVRAM-VVSSE--LV-YLGCKGG--TVEIWDQKR-QIRIETLQTGTSGKVQ 1068 (1094)
Q Consensus 998 s~s~Dg~~I~iwd~~-~~~~~~~~~-~~~~v~~l-~~spd--~l-~sgs~dg--~I~vwd~~t-~~~~~~l~~~h~~~I~ 1068 (1094)
+++.|| .++||.+. ++. ...+. +...+..+ .|+|| .+ ++++.++ .++||++.. +.....+. + ...+.
T Consensus 353 ~~~~~g-~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~-~-~~~~~ 428 (741)
T 2ecf_A 353 SSERTG-FQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLS-K-APGMH 428 (741)
T ss_dssp EECTTS-SCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECC-C-SCSEE
T ss_pred EecCCC-ccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecc-c-CCCce
Confidence 887775 67777665 344 56665 56678777 59998 45 4555565 899999864 55566663 3 55788
Q ss_pred EEEEcCCCCEEEEEeCC----CcEEEEeC
Q 001349 1069 CMALDDNEEFLVIGTSD----GRIQAWGL 1093 (1094)
Q Consensus 1069 ~l~~Spdg~~L~sgs~D----G~I~iWdl 1093 (1094)
.++|||||++|+....+ +.+.+|+.
T Consensus 429 ~~~~spdg~~l~~~~~~~~~p~~~~l~~~ 457 (741)
T 2ecf_A 429 SASFARNASVYVDSWSNNSTPPQIELFRA 457 (741)
T ss_dssp EEEECTTSSEEEEEEEETTEEEEEEEEET
T ss_pred EEEECCCCCEEEEEecCCCCCCeEEEEEc
Confidence 99999999988866543 45777764
No 135
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.81 E-value=4.9e-18 Score=191.40 Aligned_cols=256 Identities=10% Similarity=0.077 Sum_probs=183.3
Q ss_pred cEEEEeeCCCCeEEEeCCc--ceeecc-cCCC-cEEEEEEeCC--E-EEEEECCCeEEEEecCCCcceeEEEecc-c---
Q 001349 786 VKVLSNGHDSSADFWNHRE--LVHVDS-SENG-KVLSIACFRD--K-IFSGHSDGTIKVWTGRGSILHLIQQIRE-H--- 854 (1094)
Q Consensus 786 ~~l~s~s~dg~I~vWd~~~--~~~~~~-~h~~-~V~~l~fspd--~-LaSgs~Dg~I~vWd~~t~~~~~~~~l~~-H--- 854 (1094)
.++++++.++.|.+||..+ ....+. ++.. .+..++|+|+ . +++++.++.|.+||+.++ +.+..+.. +
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~ 79 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG--ETLGRIDLSTPEE 79 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC--CEEEEEECCBTTE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCC--CeEeeEEcCCccc
Confidence 4789999999999999873 233332 2222 5889999996 4 556667899999999988 55555542 2
Q ss_pred -CCCeEEEEEecCCCEEEEEe------------CCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEE
Q 001349 855 -TKAVTGLAILQSGEMLYSGS------------LDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIK 921 (1094)
Q Consensus 855 -~~~V~sv~fspdg~~LaSgs------------~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~ 921 (1094)
...+..++|+|+|+++++++ .++.|.+||+.+++.. ........+..+. |+|+|+.
T Consensus 80 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~--~~~~~~~~~~~~~-------~s~dg~~-- 148 (337)
T 1pby_B 80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRR--KAFEAPRQITMLA-------WARDGSK-- 148 (337)
T ss_dssp EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEE--EEEECCSSCCCEE-------ECTTSSC--
T ss_pred ccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEE--EEEeCCCCcceeE-------ECCCCCE--
Confidence 23678899999999999886 5799999999987532 2222233344444 8888875
Q ss_pred EEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEEC
Q 001349 922 VHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSL 1001 (1094)
Q Consensus 922 ~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~ 1001 (1094)
++++ ++.|.+||+.+++........ .+..+ +.|+|++..++..+.
T Consensus 149 --------------------------l~~~--~~~i~~~d~~~~~~~~~~~~~----~~~~~---~~~s~dg~~l~~~~~ 193 (337)
T 1pby_B 149 --------------------------LYGL--GRDLHVMDPEAGTLVEDKPIQ----SWEAE---TYAQPDVLAVWNQHE 193 (337)
T ss_dssp --------------------------EEEE--SSSEEEEETTTTEEEEEECST----TTTTT---TBCCCBCCCCCCCCT
T ss_pred --------------------------EEEe--CCeEEEEECCCCcEeeeeecc----ccCCC---ceeCCCccEEeeecc
Confidence 3344 678999999988776432211 11122 256777665544333
Q ss_pred CCC-----------------------EEEEEECCCCeEEEEec---CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCC
Q 001349 1002 DGA-----------------------AVKMWSTSNYNMVGSLP---TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQ 1053 (1094)
Q Consensus 1002 Dg~-----------------------~I~iwd~~~~~~~~~~~---~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~ 1053 (1094)
+++ .|.+||+.+++.. .+. +...+.+++|+|| +++++ ++.|++||+.++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~ 270 (337)
T 1pby_B 194 SSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKN 270 (337)
T ss_dssp TTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTT
T ss_pred CCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCC
Confidence 322 4789999998765 332 4567889999998 67766 799999999999
Q ss_pred cEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1054 IRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1054 ~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
+.+..+.. ...+.+++|+|||++|++++.++.|++||+.
T Consensus 271 ~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~ 309 (337)
T 1pby_B 271 ASIKRVPL--PHSYYSVNVSTDGSTVWLGGALGDLAAYDAE 309 (337)
T ss_dssp EEEEEEEC--SSCCCEEEECTTSCEEEEESBSSEEEEEETT
T ss_pred cCcceecC--CCceeeEEECCCCCEEEEEcCCCcEEEEECc
Confidence 98888753 3468899999999999999999999999973
No 136
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.81 E-value=2.8e-17 Score=186.79 Aligned_cols=262 Identities=13% Similarity=0.129 Sum_probs=193.1
Q ss_pred ccccccCcEEEEeeC-------CCCeEEEeCCc--ceeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcce
Q 001349 779 SPLAFEMVKVLSNGH-------DSSADFWNHRE--LVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILH 846 (1094)
Q Consensus 779 ~~~~~d~~~l~s~s~-------dg~I~vWd~~~--~~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~ 846 (1094)
..+++++.++++++. ++.|.+||..+ ...... +...+..++|+++ .++++..++.|.+||..++ +
T Consensus 46 ~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~--~ 122 (353)
T 3vgz_A 46 MAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH-NDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTG--E 122 (353)
T ss_dssp EEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE-ESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTC--C
T ss_pred eEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe-cCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCC--e
Confidence 456778888877764 56899999873 223332 2345788999996 4555566899999999998 5
Q ss_pred eEEEecccCCC---------eEEEEEecCCCEEEEEe--CCCcEEEEECCCCceEEEEecc-cCccceeeeecCceEEEe
Q 001349 847 LIQQIREHTKA---------VTGLAILQSGEMLYSGS--LDKTARVWSIGNEEIHCVQVHD-IKDQIQNLAVSNSILCFI 914 (1094)
Q Consensus 847 ~~~~l~~H~~~---------V~sv~fspdg~~LaSgs--~DgtI~vWdi~~~~~~~~~~~~-~~~~V~~v~~~~~~~~fs 914 (1094)
.+..+..+... +.+++|+|+|+++++++ .++.|.+||..+++.. .... ....+..+. |+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~--~~~~~~~~~~~~~~-------~s 193 (353)
T 3vgz_A 123 VKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLK--TAIQNTGKMSTGLA-------LD 193 (353)
T ss_dssp EEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEE--EEECCCCTTCCCCE-------EE
T ss_pred eEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceE--EEecCCCCccceEE-------EC
Confidence 66666554432 78999999999887776 4789999999987532 2222 223344444 88
Q ss_pred eCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCcc
Q 001349 915 PQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLV 994 (1094)
Q Consensus 915 pdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~ 994 (1094)
|+|+. +++++.++.|.+||+.+++....... ...++...+..++|+|++.
T Consensus 194 ~dg~~----------------------------l~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~s~dg~ 243 (353)
T 3vgz_A 194 SEGKR----------------------------LYTTNADGELITIDTADNKILSRKKL--LDDGKEHFFINISLDTARQ 243 (353)
T ss_dssp TTTTE----------------------------EEEECTTSEEEEEETTTTEEEEEEEC--CCSSSCCCEEEEEEETTTT
T ss_pred CCCCE----------------------------EEEEcCCCeEEEEECCCCeEEEEEEc--CCCCCCcccceEEECCCCC
Confidence 88875 66677789999999999887644321 1123455788999999998
Q ss_pred EEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEE-cCCeEEEEECCCCcEEEEecccCCcceEEEE
Q 001349 995 YTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGC-KGGTVEIWDQKRQIRIETLQTGTSGKVQCMA 1071 (1094)
Q Consensus 995 ~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs-~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~ 1071 (1094)
+++.++.+++.|.+||..+++.+..+..... ..++|+|+ ++++++ .++.|.+||..+++.+..+. ....+.+++
T Consensus 244 ~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~ 320 (353)
T 3vgz_A 244 RAFITDSKAAEVLVVDTRNGNILAKVAAPES-LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFD--TPTHPNSLA 320 (353)
T ss_dssp EEEEEESSSSEEEEEETTTCCEEEEEECSSC-CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEE--CCSEEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCcEEEEEEcCCC-ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEe--cCCCCCeEE
Confidence 7777766656999999999998888874433 56899988 565555 68999999999999988885 334789999
Q ss_pred EcCCCCEEEEEeCC
Q 001349 1072 LDDNEEFLVIGTSD 1085 (1094)
Q Consensus 1072 ~Spdg~~L~sgs~D 1085 (1094)
|+|||++|++++.+
T Consensus 321 ~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 321 LSADGKTLYVSVKQ 334 (353)
T ss_dssp ECTTSCEEEEEEEC
T ss_pred EcCCCCEEEEEEcc
Confidence 99999977776655
No 137
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.80 E-value=2.8e-17 Score=187.22 Aligned_cols=262 Identities=11% Similarity=0.120 Sum_probs=178.9
Q ss_pred CCCCeEEEeCCc--c--ee-ecccCCCcEEEEEEeCC-EEEEEEC---CCeEEEEecCCCcceeEEEecccCCCeEEEEE
Q 001349 793 HDSSADFWNHRE--L--VH-VDSSENGKVLSIACFRD-KIFSGHS---DGTIKVWTGRGSILHLIQQIREHTKAVTGLAI 863 (1094)
Q Consensus 793 ~dg~I~vWd~~~--~--~~-~~~~h~~~V~~l~fspd-~LaSgs~---Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~f 863 (1094)
.++.|.+|+++. . .. ....+...+..++|+|| .+++++. ++.|++||+.++..+.+..+..|...+..++|
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~ 93 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAV 93 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEE
T ss_pred CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEE
Confidence 356688887752 1 11 22345677888999997 4555544 68999999988755566666678888999999
Q ss_pred ecCCCEEEEEe-CCCcEEEEECC-CCceEEEEecccC--c--------cceeeeecCceEEEeeCCCeEEEEEeCCeEEE
Q 001349 864 LQSGEMLYSGS-LDKTARVWSIG-NEEIHCVQVHDIK--D--------QIQNLAVSNSILCFIPQGAGIKVHLRNGKTKL 931 (1094)
Q Consensus 864 spdg~~LaSgs-~DgtI~vWdi~-~~~~~~~~~~~~~--~--------~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l 931 (1094)
+|||++|++++ .+++|.+|++. ++....+...... . .+..+. |+|+|+ +
T Consensus 94 spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~-------~spdg~-l----------- 154 (347)
T 3hfq_A 94 DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTD-------LTPDNR-L----------- 154 (347)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEE-------ECTTSC-E-----------
T ss_pred CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEE-------ECCCCc-E-----------
Confidence 99999998888 68999999995 4433333322111 1 122333 667666 2
Q ss_pred EcCCCCceEEEEeCCEEEEEEcCCeEEEEECC-CCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEE
Q 001349 932 LNSSKYPKCLALVQGKVYCGCQDGAIQEIDLA-TGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWS 1010 (1094)
Q Consensus 932 ~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~-~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd 1010 (1094)
+++...++.|.+||+. ++....... ........+..++|+|++.+++..+..++.|.+|+
T Consensus 155 ----------------~v~~~~~~~v~~~~~~~~g~~~~~~~---~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~ 215 (347)
T 3hfq_A 155 ----------------AVIDLGSDKVYVYNVSDAGQLSEQSV---LTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLK 215 (347)
T ss_dssp ----------------EEEETTTTEEEEEEECTTSCEEEEEE---EECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ----------------EEEeCCCCEEEEEEECCCCcEEEeee---EEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEE
Confidence 4455567889999998 554432110 01112346788999999997766655556999999
Q ss_pred CCC--CeE--EEEec-CC------CCEEEEEEeCC--EE-EEEEcCCeEEEEECCC---CcEEEEecccCCcceEEEEEc
Q 001349 1011 TSN--YNM--VGSLP-TL------SEVRAMVVSSE--LV-YLGCKGGTVEIWDQKR---QIRIETLQTGTSGKVQCMALD 1073 (1094)
Q Consensus 1011 ~~~--~~~--~~~~~-~~------~~v~~l~~spd--~l-~sgs~dg~I~vwd~~t---~~~~~~l~~~h~~~I~~l~~S 1073 (1094)
+.. ++. +..+. .. ..+..++|+|| ++ +++..++.|.+||+.. .+.+..+ ..+...+..++|+
T Consensus 216 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~-~~~~~~~~~~~~s 294 (347)
T 3hfq_A 216 YDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQI-STEGDFPRDFDLD 294 (347)
T ss_dssp EETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEE-ECSSSCCCEEEEC
T ss_pred ecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEE-ecCCCCcCeEEEC
Confidence 874 543 22332 11 45889999999 55 4556689999999873 2455555 3455678999999
Q ss_pred CCCCEEEEEeCC-CcEEEEeC
Q 001349 1074 DNEEFLVIGTSD-GRIQAWGL 1093 (1094)
Q Consensus 1074 pdg~~L~sgs~D-G~I~iWdl 1093 (1094)
|||++|++++.+ +.|.+|++
T Consensus 295 pdg~~l~v~~~~~~~v~v~~~ 315 (347)
T 3hfq_A 295 PTEAFVVVVNQNTDNATLYAR 315 (347)
T ss_dssp TTSSEEEEEETTTTEEEEEEE
T ss_pred CCCCEEEEEEcCCCcEEEEEE
Confidence 999998888764 89999954
No 138
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.79 E-value=2.2e-18 Score=216.88 Aligned_cols=310 Identities=9% Similarity=0.030 Sum_probs=205.1
Q ss_pred cccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCC---cEEEEEEeCC--EEEEEECC---------CeEEEEecC
Q 001349 778 YSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENG---KVLSIACFRD--KIFSGHSD---------GTIKVWTGR 841 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~---~V~~l~fspd--~LaSgs~D---------g~I~vWd~~ 841 (1094)
...+++||.++++ +.||+|++||.. +....+.+|.. .|.+++|||| +|++++.+ +.|++||+.
T Consensus 21 ~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~ 99 (723)
T 1xfd_A 21 EAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIP 99 (723)
T ss_dssp CCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESS
T ss_pred ccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECC
Confidence 4567788987766 789999999987 34455556654 4999999998 88888764 788899999
Q ss_pred CCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccc-ee-ee---------ecCce
Q 001349 842 GSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQI-QN-LA---------VSNSI 910 (1094)
Q Consensus 842 t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V-~~-v~---------~~~~~ 910 (1094)
++....+....+|...+..++|||||+.|+.++. +.|++||+.+++...+.... ...+ .. +. -....
T Consensus 100 ~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~-~~~~~~~g~~~~v~~ee~~~~~~~ 177 (723)
T 1xfd_A 100 HGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTG-KEGVIYNGLSDWLYEEEILKTHIA 177 (723)
T ss_dssp SCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCC-BTTTEEEEECCHHHHHTTSSSSEE
T ss_pred CCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCC-CCCceECcccceeEEEEeccCcce
Confidence 9843333333456666999999999999999987 79999999988644433221 1111 00 00 00012
Q ss_pred EEEeeCCCeEEEEEeCC-eEEEEcC-------CCCceEEEEeC-CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCC
Q 001349 911 LCFIPQGAGIKVHLRNG-KTKLLNS-------SKYPKCLALVQ-GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKA 981 (1094)
Q Consensus 911 ~~fspdg~~l~~~~~~g-~i~l~~~-------~~~v~~l~~s~-~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~ 981 (1094)
+.|+|||+.++....++ .+.+|.. ...+..+.+.. +.. ..+..|++||+.+++....+........+.
T Consensus 178 ~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~---~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~ 254 (723)
T 1xfd_A 178 HWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSE---NPSISLHVIGLNGPTHDLEMMPPDDPRMRE 254 (723)
T ss_dssp EEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSC---CCEEEEEEEESSSSCCCEECCCCCCGGGSS
T ss_pred EEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCC---CCeeEEEEEECCCCceeEEeeCCccCCCcc
Confidence 44999999998887653 3444432 12344555542 110 223489999999887543333222223346
Q ss_pred CCeEEEEEeCCccEEEEEECC---CCEEEEEECCCCeEEEEec--CCCCE----EEEEEeCC--EEE-E-EEcCC-----
Q 001349 982 NPVHALQVHNGLVYTASTSLD---GAAVKMWSTSNYNMVGSLP--TLSEV----RAMVVSSE--LVY-L-GCKGG----- 1043 (1094)
Q Consensus 982 ~~V~sl~fs~~~~~las~s~D---g~~I~iwd~~~~~~~~~~~--~~~~v----~~l~~spd--~l~-s-gs~dg----- 1043 (1094)
..+..++|+||+.++++.+.. ...|.+||+.+++....+. +...+ ..++|+|| .++ . +..++
T Consensus 255 ~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~ 334 (723)
T 1xfd_A 255 YYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKF 334 (723)
T ss_dssp EEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCE
T ss_pred ceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcce
Confidence 678999999999988766432 2489999999988766554 33333 37899998 344 3 55667
Q ss_pred -eEEEEE-CCCCc--EEEEecccCCcceEEEEEcCCCCEEEEEeCC---CcEEEEeC
Q 001349 1044 -TVEIWD-QKRQI--RIETLQTGTSGKVQCMALDDNEEFLVIGTSD---GRIQAWGL 1093 (1094)
Q Consensus 1044 -~I~vwd-~~t~~--~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~D---G~I~iWdl 1093 (1094)
.|++|| ..++. +...+..++......++|+|||+.|+..+.+ +.+++|++
T Consensus 335 ~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 391 (723)
T 1xfd_A 335 YHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSA 391 (723)
T ss_dssp EEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEE
T ss_pred eEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEE
Confidence 577777 34444 1445533333333346999999999766655 78999986
No 139
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.79 E-value=1.5e-17 Score=218.22 Aligned_cols=296 Identities=11% Similarity=0.060 Sum_probs=223.9
Q ss_pred cccccccccCcEEEEeeCC------CCeEEEeCCc-ceeecccCCCcE-------EEEEEeCC--EEEEEECC------C
Q 001349 776 RKYSPLAFEMVKVLSNGHD------SSADFWNHRE-LVHVDSSENGKV-------LSIACFRD--KIFSGHSD------G 833 (1094)
Q Consensus 776 ~~~~~~~~d~~~l~s~s~d------g~I~vWd~~~-~~~~~~~h~~~V-------~~l~fspd--~LaSgs~D------g 833 (1094)
.....|++||++|++++.+ ..|.+|+... ....+..|.+.+ .+++|+|| ++++++.+ .
T Consensus 55 v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~ 134 (1045)
T 1k32_A 55 INNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMT 134 (1045)
T ss_dssp EEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCC
T ss_pred ccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccc
Confidence 4456788999999988654 4788999873 356677888888 99999997 77777754 4
Q ss_pred eEEEEecCCCccee-----------------------------------------------EEEecccCCCeEEEEEecC
Q 001349 834 TIKVWTGRGSILHL-----------------------------------------------IQQIREHTKAVTGLAILQS 866 (1094)
Q Consensus 834 ~I~vWd~~t~~~~~-----------------------------------------------~~~l~~H~~~V~sv~fspd 866 (1094)
.|++||+.++.... ...+.+|...+.++.|+++
T Consensus 135 ~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d 214 (1045)
T 1k32_A 135 CLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH 214 (1045)
T ss_dssp EEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT
T ss_pred eEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC
Confidence 68888876652110 1233567888889999988
Q ss_pred CCEEEEEeCCCcEEEEECCC--CceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCC---------
Q 001349 867 GEMLYSGSLDKTARVWSIGN--EEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS--------- 935 (1094)
Q Consensus 867 g~~LaSgs~DgtI~vWdi~~--~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~--------- 935 (1094)
.++++++.|+++++|.++. +....+. .+. .+... .|+|||+.++.. .++.+.+|+..
T Consensus 215 -~l~~~~~~dg~~~l~~~~~~g~~~~~l~--~~~-~~~~~-------~~SpDG~~la~~-~~~~i~~~d~~~~~l~~l~~ 282 (1045)
T 1k32_A 215 -RIYFITDIDGFGQIYSTDLDGKDLRKHT--SFT-DYYPR-------HLNTDGRRILFS-KGGSIYIFNPDTEKIEKIEI 282 (1045)
T ss_dssp -EEEEEECTTSSCEEEEEETTSCSCEECC--CCC-SSCEE-------EEEESSSCEEEE-ETTEEEEECTTTCCEEECCC
T ss_pred -EEEEEEeccCceEEEEEeCCCCcceEec--CCC-Cccee-------eEcCCCCEEEEE-eCCEEEEecCCceEeeeecc
Confidence 6777888889999998653 2222222 111 23333 499999988887 58888888741
Q ss_pred -------------CCceEEEEe-CC--EEEEEEcCCeEEEEECCCCceeEEeccceeecCCCC-CeEEEEEeCCccEEEE
Q 001349 936 -------------KYPKCLALV-QG--KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKAN-PVHALQVHNGLVYTAS 998 (1094)
Q Consensus 936 -------------~~v~~l~~s-~~--~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~-~V~sl~fs~~~~~las 998 (1094)
..+.++.|+ ++ .+++++ ++.|.+|+..++... .+..|.. .+..+.|+ ++..++.
T Consensus 283 ~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-------~~~~~~~~~~~~~~~s-dg~~l~~ 353 (1045)
T 1k32_A 283 GDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-------KVPEPLRIRYVRRGGD-TKVAFIH 353 (1045)
T ss_dssp CCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-------ECSCCSCEEEEEECSS-SEEEEEE
T ss_pred CcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-------EccCCCcceEEeeeEc-CCCeEEE
Confidence 147889998 63 366666 899999999887653 3445666 78999999 9998888
Q ss_pred EECCCCEEE-EEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCC
Q 001349 999 TSLDGAAVK-MWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDN 1075 (1094)
Q Consensus 999 ~s~Dg~~I~-iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spd 1075 (1094)
++.++ .+. +||+.++.......+...+..++|+|| ++++++.++.|++||+.+++....+ .+|.+.+.+++||||
T Consensus 354 ~s~~~-~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~-~~~~~~v~~~~~SpD 431 (1045)
T 1k32_A 354 GTREG-DFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE-RSREAMITDFTISDN 431 (1045)
T ss_dssp EETTE-EEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSSCCCCEEECTT
T ss_pred EECCC-ceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEec-cCCCCCccceEECCC
Confidence 88764 888 999988765544345678999999999 8999999999999999999887776 478889999999999
Q ss_pred CCEEEEEeCCC----------cEEEEeCC
Q 001349 1076 EEFLVIGTSDG----------RIQAWGLS 1094 (1094)
Q Consensus 1076 g~~L~sgs~DG----------~I~iWdls 1094 (1094)
|++|++++.++ .|++||+.
T Consensus 432 G~~la~~~~~~~~~~~~~~~~~i~l~d~~ 460 (1045)
T 1k32_A 432 SRFIAYGFPLKHGETDGYVMQAIHVYDME 460 (1045)
T ss_dssp SCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred CCeEEEEecCccccccCCCCCeEEEEECC
Confidence 99999887654 89999973
No 140
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.79 E-value=1.1e-17 Score=209.90 Aligned_cols=296 Identities=10% Similarity=0.067 Sum_probs=201.2
Q ss_pred CcEEEEeeCCCCeEEEeCCcce---eecccCC-----------------CcEEEEEEeCC-EEEEEECCCeEEEEecCCC
Q 001349 785 MVKVLSNGHDSSADFWNHRELV---HVDSSEN-----------------GKVLSIACFRD-KIFSGHSDGTIKVWTGRGS 843 (1094)
Q Consensus 785 ~~~l~s~s~dg~I~vWd~~~~~---~~~~~h~-----------------~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~ 843 (1094)
+..+++++.++ | +||..+.. ..+..|. ..|.+++|+|| .++.+ .|++|++||+.++
T Consensus 35 g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd~~~~~~-~~~~i~~~d~~~~ 111 (706)
T 2z3z_A 35 GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGRGLVVLF-TQGGLVGFDMLAR 111 (706)
T ss_dssp TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTTTEEEEE-ETTEEEEEETTTT
T ss_pred CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCCCeEEEE-ECCEEEEEECCCC
Confidence 67778888888 8 99987322 3333332 56999999998 44444 4699999999988
Q ss_pred cceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC-----CceEEEEecccCccc-eeee------ecCceE
Q 001349 844 ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGN-----EEIHCVQVHDIKDQI-QNLA------VSNSIL 911 (1094)
Q Consensus 844 ~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~-----~~~~~~~~~~~~~~V-~~v~------~~~~~~ 911 (1094)
.. ..+..|...+.+++|||||++|+++ .|++|++||+.+ ++...+..... ..+ ..+. -....+
T Consensus 112 --~~-~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~-~~~~~g~~~~~ee~~~~~~~ 186 (706)
T 2z3z_A 112 --KV-TYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGT-ETLVYGQAVHQREFGIEKGT 186 (706)
T ss_dssp --EE-EEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCB-TTEEESSCCGGGCTTCCCSE
T ss_pred --ce-EEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCC-CCeEcccchhhhhcCCCceE
Confidence 33 3445677789999999999999985 679999999998 75333222111 111 0000 001234
Q ss_pred EEeeCCCeEEEEEe---------------------------------CCeEEEEcCC--------------CCceEEEEe
Q 001349 912 CFIPQGAGIKVHLR---------------------------------NGKTKLLNSS--------------KYPKCLALV 944 (1094)
Q Consensus 912 ~fspdg~~l~~~~~---------------------------------~g~i~l~~~~--------------~~v~~l~~s 944 (1094)
.|+|||+.+++... +..+.+|+.. ..+.++.|+
T Consensus 187 ~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~s 266 (706)
T 2z3z_A 187 FWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWS 266 (706)
T ss_dssp EECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEEC
T ss_pred EECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEE
Confidence 49999999998872 3456777642 246788888
Q ss_pred C--CEEEEEEcCC-----eEEEEECCCCc-eeEEeccceeecCCCCCeEEEEEeC--CccEEEEEECCCCEEEEEECC-C
Q 001349 945 Q--GKVYCGCQDG-----AIQEIDLATGT-FATIQTGHRKLLGKANPVHALQVHN--GLVYTASTSLDGAAVKMWSTS-N 1013 (1094)
Q Consensus 945 ~--~~l~sgs~Dg-----~I~iwDl~~~~-~~~~~~~~~~~~~h~~~V~sl~fs~--~~~~las~s~Dg~~I~iwd~~-~ 1013 (1094)
+ ..+++++.|+ .|.+||+.+++ ....... ........+..+.|+| ++.++++++.|| .++||++. +
T Consensus 267 pdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~--~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g-~~~l~~~~~~ 343 (706)
T 2z3z_A 267 PDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVE--TDKHYVEPLHPLTFLPGSNNQFIWQSRRDG-WNHLYLYDTT 343 (706)
T ss_dssp TTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEE--ECSSCCCCCSCCEECTTCSSEEEEEECTTS-SCEEEEEETT
T ss_pred CCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEc--cCCCeECccCCceeecCCCCEEEEEEccCC-ccEEEEEECC
Confidence 5 3588877776 89999999984 3322110 0011112346789999 999988887776 78898876 5
Q ss_pred CeEEEEec-CCCCEEE-EEEeCC--EEEE-EEcCC----eEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeC
Q 001349 1014 YNMVGSLP-TLSEVRA-MVVSSE--LVYL-GCKGG----TVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTS 1084 (1094)
Q Consensus 1014 ~~~~~~~~-~~~~v~~-l~~spd--~l~s-gs~dg----~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~ 1084 (1094)
+..+..+. +...+.. ++|+|| .++. ++.++ .|+.||..+++ ...+. |...+.+++|||||++++.++.
T Consensus 344 ~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~--~~~~~~~~~~spdg~~l~~~~~ 420 (706)
T 2z3z_A 344 GRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT--PESGMHRTQLSPDGSAIIDIFQ 420 (706)
T ss_dssp SCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC--CSSSEEEEEECTTSSEEEEEEE
T ss_pred CCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc--CCCceEEEEECCCCCEEEEEec
Confidence 66667776 4556766 799998 4544 44554 77888888776 44452 6667999999999998887654
Q ss_pred C----CcEEEEeCC
Q 001349 1085 D----GRIQAWGLS 1094 (1094)
Q Consensus 1085 D----G~I~iWdls 1094 (1094)
+ +.|++||+.
T Consensus 421 ~~~~p~~i~l~d~~ 434 (706)
T 2z3z_A 421 SPTVPRKVTVTNIG 434 (706)
T ss_dssp CSSCSCEEEEEESS
T ss_pred CCCCCcEEEEEECC
Confidence 4 569999863
No 141
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.77 E-value=3.4e-19 Score=162.18 Aligned_cols=78 Identities=23% Similarity=0.375 Sum_probs=70.5
Q ss_pred CCCCCCCCceeccCccccccCcEEcCCc-ccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHHHHhCCC
Q 001349 155 IGKHTPPKDFVCPITTHIFDDPVTLETG-QTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPG 233 (1094)
Q Consensus 155 ~~~~~~~~~~~CpIc~~~~~dPv~~~cG-htfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~~~~~~ 233 (1094)
.....+|++|.||||+++|+|||+++|| |+|||.||++||.. +.+||.|++++....++ ||..|+++|+.|+.+++.
T Consensus 14 ~~~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~-pn~~Lk~~I~~~~~~~~~ 91 (98)
T 1wgm_A 14 ETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIR-PNTELKEKIQRWLAERKQ 91 (98)
T ss_dssp CCCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSE-ECHHHHHHHHHHHHHSTT
T ss_pred hhhhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhce-EcHHHHHHHHHHHHHcch
Confidence 3445678899999999999999999999 99999999999986 56899999999999997 999999999999998754
Q ss_pred C
Q 001349 234 G 234 (1094)
Q Consensus 234 ~ 234 (1094)
.
T Consensus 92 ~ 92 (98)
T 1wgm_A 92 Q 92 (98)
T ss_dssp C
T ss_pred h
Confidence 3
No 142
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.76 E-value=4.6e-19 Score=161.95 Aligned_cols=75 Identities=25% Similarity=0.467 Sum_probs=69.0
Q ss_pred CCCCCCCceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHHHHhCC
Q 001349 156 GKHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNP 232 (1094)
Q Consensus 156 ~~~~~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~~~~~ 232 (1094)
....+|++|.||||+++|+|||+++|||+|||.||..||.. +.+||.|++++....++ ||..|+++|+.|+..+.
T Consensus 22 ~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~L~-pn~~Lk~~I~~~~~~~~ 96 (100)
T 2kre_A 22 DYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTESMLE-PVPELKEQIQAWMREKQ 96 (100)
T ss_dssp SCSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTTSSE-ECHHHHHHHHHHHHTTT
T ss_pred hhccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCChhhce-ECHHHHHHHHHHHHHhh
Confidence 34567889999999999999999999999999999999985 67899999999999997 99999999999998765
No 143
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.76 E-value=1.1e-16 Score=209.98 Aligned_cols=290 Identities=12% Similarity=0.047 Sum_probs=217.1
Q ss_pred ccccCcEEEEeeC------------CCCeEEEeCC--cceeecccCCCcEEEEEEeCC-EEEEEECCCeEEEEecCCCcc
Q 001349 781 LAFEMVKVLSNGH------------DSSADFWNHR--ELVHVDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSIL 845 (1094)
Q Consensus 781 ~~~d~~~l~s~s~------------dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~ 845 (1094)
+++ | .+++++. +...++|... .....+.+|.+.+.++.|+++ ++++++.||+++||++....
T Consensus 159 ~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g- 235 (1045)
T 1k32_A 159 FAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDG- 235 (1045)
T ss_dssp EET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTS-
T ss_pred eCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCC-
Confidence 455 6 7777653 3456777543 233444789999999999998 66677888999999865321
Q ss_pred eeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecc---------cCccceeeeecCceEEEe-e
Q 001349 846 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHD---------IKDQIQNLAVSNSILCFI-P 915 (1094)
Q Consensus 846 ~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~---------~~~~V~~v~~~~~~~~fs-p 915 (1094)
.....+..|. .+...+|+|||++|+.++ ++.|.+||+..+.+..+.... +...+.++. |+ |
T Consensus 236 ~~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~-------~S~p 306 (1045)
T 1k32_A 236 KDLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAED-------FSPL 306 (1045)
T ss_dssp CSCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEE-------EEEC
T ss_pred CcceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCceEeeeeccCcccccccccccccccceee-------ecCC
Confidence 2345555565 467789999999998874 899999999654333111100 112355555 99 9
Q ss_pred CCCeEEEEEeCCeEEEEcCC-----------C-CceEEEEeCC-EEEEEEcCCeEE-EEECCCCceeEEeccceeecCCC
Q 001349 916 QGAGIKVHLRNGKTKLLNSS-----------K-YPKCLALVQG-KVYCGCQDGAIQ-EIDLATGTFATIQTGHRKLLGKA 981 (1094)
Q Consensus 916 dg~~l~~~~~~g~i~l~~~~-----------~-~v~~l~~s~~-~l~sgs~Dg~I~-iwDl~~~~~~~~~~~~~~~~~h~ 981 (1094)
||+.+++.. ++.+.+|+.. . .+..+.|+++ .++.++.++.+. +||+.++... .+.+|.
T Consensus 307 dG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~sdg~~l~~~s~~~~l~~~~d~~~~~~~-------~l~~~~ 378 (1045)
T 1k32_A 307 DGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-------KFEENL 378 (1045)
T ss_dssp GGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-------ECCCCC
T ss_pred CCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEcCCCeEEEEECCCceEEEEECCCCCce-------EecCCc
Confidence 999988877 7777777642 2 4556666632 478888888888 9999887653 233677
Q ss_pred CCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcC----------CeEEEE
Q 001349 982 NPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKG----------GTVEIW 1048 (1094)
Q Consensus 982 ~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~d----------g~I~vw 1048 (1094)
..+..++|+|++.++++++.++ .|++||+.+++...... |...+..++|+|| ++++++.+ +.|++|
T Consensus 379 ~~~~~~~~SpDG~~la~~~~~~-~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~ 457 (1045)
T 1k32_A 379 GNVFAMGVDRNGKFAVVANDRF-EIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVY 457 (1045)
T ss_dssp CSEEEEEECTTSSEEEEEETTS-EEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEE
T ss_pred cceeeeEECCCCCEEEEECCCC-eEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEE
Confidence 8899999999999999998886 99999999998877774 6778899999999 67776654 489999
Q ss_pred ECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1049 DQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1049 d~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
|+.+++ +..+ ..|...+..++|+|||++|++++.++...+|+.
T Consensus 458 d~~~g~-~~~l-~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~ 500 (1045)
T 1k32_A 458 DMEGRK-IFAA-TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDR 500 (1045)
T ss_dssp ETTTTE-EEEC-SCSSSBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred ECCCCc-EEEe-eCCCcccCCceEcCCCCEEEEEecccCCcCcch
Confidence 999987 5566 467788999999999999999999888888864
No 144
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.76 E-value=4.2e-19 Score=157.53 Aligned_cols=74 Identities=26% Similarity=0.468 Sum_probs=67.8
Q ss_pred CCCCCCceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHHHHhCC
Q 001349 157 KHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNP 232 (1094)
Q Consensus 157 ~~~~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~~~~~ 232 (1094)
...+|++|.||||+++|+|||+++|||+||+.||+.||.. +.+||.|++++....++ ||..|+++|+.|+..+.
T Consensus 8 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~-pn~~L~~~i~~~~~~~~ 81 (85)
T 2kr4_A 8 YSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLE-PVPELKEQIQAWMREKQ 81 (85)
T ss_dssp CTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCE-ECHHHHHHHHHHHHHHH
T ss_pred hhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcc-hHHHHHHHHHHHHHHhh
Confidence 3467889999999999999999999999999999999996 56899999999998997 99999999999997653
No 145
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.75 E-value=5.7e-17 Score=204.62 Aligned_cols=261 Identities=7% Similarity=0.018 Sum_probs=194.3
Q ss_pred CCcEEEEEEeCC--EEEEEEC-CC-----eEEEEecCCCcceeEEEecccC------------------------CCeEE
Q 001349 813 NGKVLSIACFRD--KIFSGHS-DG-----TIKVWTGRGSILHLIQQIREHT------------------------KAVTG 860 (1094)
Q Consensus 813 ~~~V~~l~fspd--~LaSgs~-Dg-----~I~vWd~~t~~~~~~~~l~~H~------------------------~~V~s 860 (1094)
...|.+++|+|| +|++++. || +|++||+.++ +....+..|. ..|.+
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSG--QTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD 113 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTC--CEEEEECGGGTC--------------------CCEESCC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCC--ceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence 567999999997 8999988 88 9999999998 4444444433 23889
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCC---ceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCC
Q 001349 861 LAILQSGEMLYSGSLDKTARVWSIGNE---EIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKY 937 (1094)
Q Consensus 861 v~fspdg~~LaSgs~DgtI~vWdi~~~---~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~ 937 (1094)
++|||||++|++++. ++|++||+.++ .... ...+...+..+. |+|||+.++... ++.+.+|+..+.
T Consensus 114 ~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~--l~~~~~~~~~~~-------~SPDG~~la~~~-~~~i~~~d~~~g 182 (741)
T 2ecf_A 114 YQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQ--LTHGEGFATDAK-------LSPKGGFVSFIR-GRNLWVIDLASG 182 (741)
T ss_dssp CEECTTSSEEEEEET-TEEEEEESSSCSTTSCCB--CCCSSSCEEEEE-------ECTTSSEEEEEE-TTEEEEEETTTT
T ss_pred eEECCCCCEEEEEeC-CcEEEEECCCCCcceEEE--cccCCccccccc-------CCCCCCEEEEEe-CCcEEEEecCCC
Confidence 999999999999987 89999999987 4332 223345566666 999999988776 568888875321
Q ss_pred ----------------------------ceEEEEeC--CEEEEEEcCC--------------------------------
Q 001349 938 ----------------------------PKCLALVQ--GKVYCGCQDG-------------------------------- 955 (1094)
Q Consensus 938 ----------------------------v~~l~~s~--~~l~sgs~Dg-------------------------------- 955 (1094)
+..+.|++ ..|++++.|+
T Consensus 183 ~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~ 262 (741)
T 2ecf_A 183 RQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQ 262 (741)
T ss_dssp EEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCE
T ss_pred CEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCe
Confidence 36688886 3488877765
Q ss_pred -eEEEEECCC-CceeEEeccceeecCCCCCeEEEEEeCCccEEEEEEC----CCCEEEEEECCCCeEEEEecCC--C---
Q 001349 956 -AIQEIDLAT-GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSL----DGAAVKMWSTSNYNMVGSLPTL--S--- 1024 (1094)
Q Consensus 956 -~I~iwDl~~-~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~----Dg~~I~iwd~~~~~~~~~~~~~--~--- 1024 (1094)
.|.+||+.+ ++....... ..|...+..++| ||+.+++..+. +...|.+||+.+++....+... .
T Consensus 263 ~~l~~~d~~~~~~~~~~~~~----~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~ 337 (741)
T 2ecf_A 263 VKLGVISPAEQAQTQWIDLG----KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVP 337 (741)
T ss_dssp EEEEEECSSTTCCCEEECCC----SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCC
T ss_pred eEEEEEECCCCCceEEecCC----CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCC
Confidence 889999988 775432111 146678999999 99998887654 1248999999999877766532 2
Q ss_pred CEEEEEEeCC--EEEEEEcCCeEEEEECC-CCcEEEEecccCCcceEEE-EEcCCCCEEEE-EeCCC--cEEEEeC
Q 001349 1025 EVRAMVVSSE--LVYLGCKGGTVEIWDQK-RQIRIETLQTGTSGKVQCM-ALDDNEEFLVI-GTSDG--RIQAWGL 1093 (1094)
Q Consensus 1025 ~v~~l~~spd--~l~sgs~dg~I~vwd~~-t~~~~~~l~~~h~~~I~~l-~~Spdg~~L~s-gs~DG--~I~iWdl 1093 (1094)
.+..++|+|| ++++++.||.++||.+. +++ ...+ ..|...|..+ .|+|||+.|+. ++.++ .+++|++
T Consensus 338 ~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l-~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~ 411 (741)
T 2ecf_A 338 LHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAAL-THGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAV 411 (741)
T ss_dssp CCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEES-CCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEE
T ss_pred cCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeee-eecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEE
Confidence 3468899998 78888889988888765 344 6666 4667778887 59999997754 55555 8999975
No 146
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.74 E-value=1.4e-16 Score=175.14 Aligned_cols=222 Identities=13% Similarity=0.083 Sum_probs=158.2
Q ss_pred EEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC-CceEEEEecccCccceeeee
Q 001349 828 SGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGN-EEIHCVQVHDIKDQIQNLAV 906 (1094)
Q Consensus 828 Sgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~-~~~~~~~~~~~~~~V~~v~~ 906 (1094)
+++.|++|++||+.++ .. ..+..|...|.+++|+|+|++|++++ ++.|++||+.+ ++...+........+.++.
T Consensus 17 ~~~~~~~i~~~d~~~~--~~-~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~- 91 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTR--KM-RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHG- 91 (297)
T ss_dssp -CCCCEEEEEEETTTT--EE-EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCE-
T ss_pred CCCcceeEEEEeCCCC--ce-eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceE-
Confidence 3467899999999988 33 34556899999999999999999987 78999999998 7644333222234555555
Q ss_pred cCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEE
Q 001349 907 SNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHA 986 (1094)
Q Consensus 907 ~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~s 986 (1094)
|+|+|+.+++...+. .....|..||..++... .+..+ ..+..
T Consensus 92 ------~spdg~~l~~~~~~~------------------------~~~~~l~~~~~~~~~~~-------~~~~~-~~~~~ 133 (297)
T 2ojh_A 92 ------ISPDGALYAISDKVE------------------------FGKSAIYLLPSTGGTPR-------LMTKN-LPSYW 133 (297)
T ss_dssp ------ECTTSSEEEEEECTT------------------------TSSCEEEEEETTCCCCE-------ECCSS-SSEEE
T ss_pred ------ECCCCCEEEEEEeCC------------------------CCcceEEEEECCCCceE-------EeecC-CCccc
Confidence 899998643332110 01234555565555432 22222 34889
Q ss_pred EEEeCCccEEE-EEECCCCEEEEEEC--CCCeEEEEecCCCCEEEEEEeCC--EEEEEE-cCCeEEEEECC-CCcEEEEe
Q 001349 987 LQVHNGLVYTA-STSLDGAAVKMWST--SNYNMVGSLPTLSEVRAMVVSSE--LVYLGC-KGGTVEIWDQK-RQIRIETL 1059 (1094)
Q Consensus 987 l~fs~~~~~la-s~s~Dg~~I~iwd~--~~~~~~~~~~~~~~v~~l~~spd--~l~sgs-~dg~I~vwd~~-t~~~~~~l 1059 (1094)
+.|+|++.+++ +++.++ .+++|++ .++.......+...+.++.|+|+ .++.++ .++.+++|++. .+..+..+
T Consensus 134 ~~~spdg~~l~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~ 212 (297)
T 2ojh_A 134 HGWSPDGKSFTYCGIRDQ-VFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERI 212 (297)
T ss_dssp EEECTTSSEEEEEEEETT-EEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEEC
T ss_pred eEECCCCCEEEEEECCCC-ceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEE
Confidence 99999998777 566665 8999985 44544443446788999999998 566555 58999999876 45556666
Q ss_pred cccCCcceEEEEEcCCCCEEEEEeCC-----------CcEEEEeCC
Q 001349 1060 QTGTSGKVQCMALDDNEEFLVIGTSD-----------GRIQAWGLS 1094 (1094)
Q Consensus 1060 ~~~h~~~I~~l~~Spdg~~L~sgs~D-----------G~I~iWdls 1094 (1094)
..|...+..++|+|||++|++++.+ +.|++||+.
T Consensus 213 -~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~ 257 (297)
T 2ojh_A 213 -TDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMD 257 (297)
T ss_dssp -CCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETT
T ss_pred -ecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecC
Confidence 4677789999999999999988876 569999873
No 147
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.74 E-value=1.6e-16 Score=194.88 Aligned_cols=275 Identities=12% Similarity=0.066 Sum_probs=189.5
Q ss_pred HHHHHHHhhhccccccccccCcEEEEeeC-CCCeEEEeCCc-ceeecccCC-CcEEEEEEeCC-EEEEEEC---CCeEEE
Q 001349 765 MKDIMKGLRELRKYSPLAFEMVKVLSNGH-DSSADFWNHRE-LVHVDSSEN-GKVLSIACFRD-KIFSGHS---DGTIKV 837 (1094)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~d~~~l~s~s~-dg~I~vWd~~~-~~~~~~~h~-~~V~~l~fspd-~LaSgs~---Dg~I~v 837 (1094)
++...+.+...+....+++||++|++++. ||+++||++.. ....+..|. ..+..++|+|| ++++++. +...++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l 92 (582)
T 3o4h_A 13 VRDVERLIAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHAL 92 (582)
T ss_dssp HHHHHHHHHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEE
T ss_pred HHHHHHHhccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCCeEEEEeccCCCCcceEE
Confidence 33443444445667788999999999887 99999999862 223344455 68999999999 6666664 455666
Q ss_pred EecCC--CcceeEEEecccCCCeEEEEEecCCC--EEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEE
Q 001349 838 WTGRG--SILHLIQQIREHTKAVTGLAILQSGE--MLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCF 913 (1094)
Q Consensus 838 Wd~~t--~~~~~~~~l~~H~~~V~sv~fspdg~--~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~f 913 (1094)
|.+.. .. ... .+..+. .+...+|+|||+ .+++++.|+ +.+||+.+++...+.... . .++. |
T Consensus 93 ~~~~~~~~g-~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~~~l~~~~--~--~~~~-------~ 157 (582)
T 3o4h_A 93 FKVNTSRPG-EEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDR-VALYALDGGGLRELARLP--G--FGFV-------S 157 (582)
T ss_dssp EEEETTSTT-CCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSC-EEEEEEETTEEEEEEEES--S--CEEE-------E
T ss_pred EEEeccCCC-ccc-cccCCC-CceeeeeCCCCCeEEEEecCCCC-ceEEEccCCcEEEeecCC--C--ceEE-------E
Confidence 65433 21 122 333222 344668888875 444455554 559999998654444322 1 3444 9
Q ss_pred eeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCc
Q 001349 914 IPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGL 993 (1094)
Q Consensus 914 spdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~ 993 (1094)
+|||+.++....++ +..+.|++||+.+++.. .+.+|...+..++|+||+
T Consensus 158 spDG~~la~~~~~~------------------------~~~~~i~~~d~~~g~~~-------~l~~~~~~~~~~~~SpDG 206 (582)
T 3o4h_A 158 DIRGDLIAGLGFFG------------------------GGRVSLFTSNLSSGGLR-------VFDSGEGSFSSASISPGM 206 (582)
T ss_dssp EEETTEEEEEEEEE------------------------TTEEEEEEEETTTCCCE-------EECCSSCEEEEEEECTTS
T ss_pred CCCCCEEEEEEEcC------------------------CCCeEEEEEcCCCCCce-------EeecCCCccccceECCCC
Confidence 99999754332221 01167999999988763 455677789999999999
Q ss_pred cEEEEEECCC-CEEEEEECCCCeEEEEec-CCCCEEEEE--------EeCC--EEEEEEcCCeEEEEECCCCcEEEEecc
Q 001349 994 VYTASTSLDG-AAVKMWSTSNYNMVGSLP-TLSEVRAMV--------VSSE--LVYLGCKGGTVEIWDQKRQIRIETLQT 1061 (1094)
Q Consensus 994 ~~las~s~Dg-~~I~iwd~~~~~~~~~~~-~~~~v~~l~--------~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~ 1061 (1094)
.+++++..++ ..|++||+.+++.. .+. +...+..++ |+|| .+++++.+|++++|++ ++...
T Consensus 207 ~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---- 279 (582)
T 3o4h_A 207 KVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---- 279 (582)
T ss_dssp CEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC----
T ss_pred CEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec----
Confidence 9999666553 28999999998877 544 444555566 9999 7888999999999999 66544
Q ss_pred cCCcceEEEEEcCCCCEEEEEeCCCc---EEEEeC
Q 001349 1062 GTSGKVQCMALDDNEEFLVIGTSDGR---IQAWGL 1093 (1094)
Q Consensus 1062 ~h~~~I~~l~~Spdg~~L~sgs~DG~---I~iWdl 1093 (1094)
.+.+.|.+++|+ ||+++++++.+.+ |.+||.
T Consensus 280 ~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~ 313 (582)
T 3o4h_A 280 APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPS 313 (582)
T ss_dssp CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETT
T ss_pred cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcC
Confidence 234678999999 9999999888754 666664
No 148
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.74 E-value=1.8e-15 Score=171.82 Aligned_cols=241 Identities=10% Similarity=0.097 Sum_probs=172.9
Q ss_pred CCcEEEEEEeCC--EEEEEEC-------CCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEE-EEeCCCcEEEE
Q 001349 813 NGKVLSIACFRD--KIFSGHS-------DGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLY-SGSLDKTARVW 882 (1094)
Q Consensus 813 ~~~V~~l~fspd--~LaSgs~-------Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~La-Sgs~DgtI~vW 882 (1094)
...+..++|+|+ ++++++. ++.|.+||..++ +.+..+.. ...+..++|+|+|++++ +...++.|.+|
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~--~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~ 116 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTL--EVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAI 116 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTC--CEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCC--eEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEE
Confidence 456789999996 6666663 578999999998 56666653 44578899999999555 45557999999
Q ss_pred ECCCCceEEEEecccCcc-ceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEE--cCCeEEE
Q 001349 883 SIGNEEIHCVQVHDIKDQ-IQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGC--QDGAIQE 959 (1094)
Q Consensus 883 di~~~~~~~~~~~~~~~~-V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs--~Dg~I~i 959 (1094)
|..+++............ -..-...+..+.|+|+|+. +++++ .++.|.+
T Consensus 117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~----------------------------l~~~~~~~~~~i~~ 168 (353)
T 3vgz_A 117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNT----------------------------VYISGIGKESVIWV 168 (353)
T ss_dssp ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTE----------------------------EEEEEESSSCEEEE
T ss_pred eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCE----------------------------EEEEecCCCceEEE
Confidence 999986432222111110 0000000112337777775 33333 4788999
Q ss_pred EECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecC-----CCCEEEEEEeCC
Q 001349 960 IDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT-----LSEVRAMVVSSE 1034 (1094)
Q Consensus 960 wDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~-----~~~v~~l~~spd 1034 (1094)
||+.+++.... +..+...+..++|++++.+++.++.++ .|.+||..+++....+.. ...+..++|+|+
T Consensus 169 ~d~~~~~~~~~------~~~~~~~~~~~~~s~dg~~l~~~~~~~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~d 241 (353)
T 3vgz_A 169 VDGGNIKLKTA------IQNTGKMSTGLALDSEGKRLYTTNADG-ELITIDTADNKILSRKKLLDDGKEHFFINISLDTA 241 (353)
T ss_dssp EETTTTEEEEE------ECCCCTTCCCCEEETTTTEEEEECTTS-EEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETT
T ss_pred EcCCCCceEEE------ecCCCCccceEEECCCCCEEEEEcCCC-eEEEEECCCCeEEEEEEcCCCCCCcccceEEECCC
Confidence 99999887633 333445578899999999888888775 999999999998887763 345788999988
Q ss_pred --EEEEEEc-CCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEe-CCCcEEEEeCC
Q 001349 1035 --LVYLGCK-GGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGT-SDGRIQAWGLS 1094 (1094)
Q Consensus 1035 --~l~sgs~-dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs-~DG~I~iWdls 1094 (1094)
++++++. ++.|.+||..+++.+..+..++ ...++|+|||+++++++ .++.|.+||+.
T Consensus 242 g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 302 (353)
T 3vgz_A 242 RQRAFITDSKAAEVLVVDTRNGNILAKVAAPE---SLAVLFNPARNEAYVTHRQAGKVSVIDAK 302 (353)
T ss_dssp TTEEEEEESSSSEEEEEETTTCCEEEEEECSS---CCCEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC---CceEEECCCCCEEEEEECCCCeEEEEECC
Confidence 5666654 5999999999999988885333 26799999999666555 68999999973
No 149
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.73 E-value=6.9e-16 Score=174.03 Aligned_cols=223 Identities=9% Similarity=0.059 Sum_probs=161.4
Q ss_pred EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCceEEEEecccCcccee
Q 001349 825 KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSL-DKTARVWSIGNEEIHCVQVHDIKDQIQN 903 (1094)
Q Consensus 825 ~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~-DgtI~vWdi~~~~~~~~~~~~~~~~V~~ 903 (1094)
.+++++.+++|++||..++ +.+..+..+...+ .++|+|+|+++++++. ++.|.+||..+++...........+..+
T Consensus 12 ~~v~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 88 (331)
T 3u4y_A 12 GIVVEQHLRRISFFSTDTL--EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMAD 88 (331)
T ss_dssp EEEEEGGGTEEEEEETTTC--CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCC
T ss_pred EEEEecCCCeEEEEeCccc--ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccc
Confidence 6888889999999999998 5666666666677 9999999997776665 8999999999886422222222333322
Q ss_pred eeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcC-C--eEEEEECCCCceeEEeccceeecCC
Q 001349 904 LAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQD-G--AIQEIDLATGTFATIQTGHRKLLGK 980 (1094)
Q Consensus 904 v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~D-g--~I~iwDl~~~~~~~~~~~~~~~~~h 980 (1094)
+. |+|+|+.+ +++..+ + .|.+||+.+++....+. +
T Consensus 89 ~~-------~s~dg~~l----------------------------~~~~~~~~~~~i~v~d~~~~~~~~~~~-------~ 126 (331)
T 3u4y_A 89 VD-------ITPDDQFA----------------------------VTVTGLNHPFNMQSYSFLKNKFISTIP-------I 126 (331)
T ss_dssp EE-------ECTTSSEE----------------------------EECCCSSSSCEEEEEETTTTEEEEEEE-------C
T ss_pred eE-------ECCCCCEE----------------------------EEecCCCCcccEEEEECCCCCeEEEEE-------C
Confidence 44 88888863 333333 2 89999999988764322 2
Q ss_pred CCCeEEEEEeCCccEEEEEECCCCE-EEEEECCCCeEE-----EEecCCCCEEEEEEeCC--EEEEE-EcCCeEEEEECC
Q 001349 981 ANPVHALQVHNGLVYTASTSLDGAA-VKMWSTSNYNMV-----GSLPTLSEVRAMVVSSE--LVYLG-CKGGTVEIWDQK 1051 (1094)
Q Consensus 981 ~~~V~sl~fs~~~~~las~s~Dg~~-I~iwd~~~~~~~-----~~~~~~~~v~~l~~spd--~l~sg-s~dg~I~vwd~~ 1051 (1094)
......++|+|++.+++.++.+++. |.+|++.....+ ..+.....+..++|+|+ +++++ ..++.|++||+.
T Consensus 127 ~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~ 206 (331)
T 3u4y_A 127 PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQ 206 (331)
T ss_dssp CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECC
Confidence 3456899999998755544444336 999998753322 23345667899999998 45554 468999999999
Q ss_pred CCcE---EEEecccCCcceEEEEEcCCCCEEEEEe-CCCcEEEEeCC
Q 001349 1052 RQIR---IETLQTGTSGKVQCMALDDNEEFLVIGT-SDGRIQAWGLS 1094 (1094)
Q Consensus 1052 t~~~---~~~l~~~h~~~I~~l~~Spdg~~L~sgs-~DG~I~iWdls 1094 (1094)
+++. +..+. +...+..++|+|||+++++++ .++.|.+||+.
T Consensus 207 ~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~ 251 (331)
T 3u4y_A 207 NPENITLLNAVG--TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQL 251 (331)
T ss_dssp STTSCEEEEEEE--CSSCCCCEEECTTSSEEEEECSSEEEEEEEETT
T ss_pred CCcccceeeecc--CCCCCceEEECCCCCEEEEEEcCCCEEEEEECC
Confidence 9988 77774 345788999999999776655 57889999963
No 150
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.73 E-value=1e-15 Score=172.69 Aligned_cols=262 Identities=9% Similarity=0.106 Sum_probs=172.2
Q ss_pred ccccccccCcEEEEeeCC-CCeEEEeCC----cc--eeecccCCCcEEEEEEeCC--EEEEEE-CCCeEEEEecCCCc-c
Q 001349 777 KYSPLAFEMVKVLSNGHD-SSADFWNHR----EL--VHVDSSENGKVLSIACFRD--KIFSGH-SDGTIKVWTGRGSI-L 845 (1094)
Q Consensus 777 ~~~~~~~d~~~l~s~s~d-g~I~vWd~~----~~--~~~~~~h~~~V~~l~fspd--~LaSgs-~Dg~I~vWd~~t~~-~ 845 (1094)
....+++++.++++++.+ +.|.+|++. .. ......+ +.+.+++|+|+ ++++++ .++.|.+||+.++. .
T Consensus 41 ~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~ 119 (343)
T 1ri6_A 41 QPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPV 119 (343)
T ss_dssp CCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEE
T ss_pred ceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccc
Confidence 345677889988888887 999999986 21 1222333 37899999997 565555 58999999994321 1
Q ss_pred eeEEEecccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCC-CceEEEE----ecccCccceeeeecCceEEEeeCCCe
Q 001349 846 HLIQQIREHTKAVTGLAILQSGEMLYSGS-LDKTARVWSIGN-EEIHCVQ----VHDIKDQIQNLAVSNSILCFIPQGAG 919 (1094)
Q Consensus 846 ~~~~~l~~H~~~V~sv~fspdg~~LaSgs-~DgtI~vWdi~~-~~~~~~~----~~~~~~~V~~v~~~~~~~~fspdg~~ 919 (1094)
..+..+..+ ..+.+++|+|+|+++++++ .|+.|++||+.+ ++..... .......+..+. |+|+|+.
T Consensus 120 ~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~pdg~~ 191 (343)
T 1ri6_A 120 GVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMV-------FHPNEQY 191 (343)
T ss_dssp EEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEE-------ECTTSSE
T ss_pred cccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEE-------ECCCCCE
Confidence 445555443 4589999999999888887 899999999987 6543222 111122333343 7777765
Q ss_pred EEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCC--CceeEEeccceeec-C--CCCCeEEEEEeCCcc
Q 001349 920 IKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLAT--GTFATIQTGHRKLL-G--KANPVHALQVHNGLV 994 (1094)
Q Consensus 920 l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~--~~~~~~~~~~~~~~-~--h~~~V~sl~fs~~~~ 994 (1094)
+ ++++..++.|.+||+.. +........ ..+. + ....+..++|+|++.
T Consensus 192 l---------------------------~~~~~~~~~i~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~i~~s~dg~ 243 (343)
T 1ri6_A 192 A---------------------------YCVNELNSSVDVWELKDPHGNIECVQTL-DMMPENFSDTRWAADIHITPDGR 243 (343)
T ss_dssp E---------------------------EEEETTTTEEEEEESSCTTSCCEEEEEE-ECSCTTCCSCCCEEEEEECTTSS
T ss_pred E---------------------------EEEeCCCCEEEEEEecCCCCcEEEEeec-cccCccccccCCccceEECCCCC
Confidence 2 33444788999999953 433211110 1111 1 134677899999998
Q ss_pred EEEEEECCCCEEEEEECC----CCeEEEEecCCCCEEEEEEeCC--EEEEEE-cCCeEEEE--ECCCCc--EEEEecccC
Q 001349 995 YTASTSLDGAAVKMWSTS----NYNMVGSLPTLSEVRAMVVSSE--LVYLGC-KGGTVEIW--DQKRQI--RIETLQTGT 1063 (1094)
Q Consensus 995 ~las~s~Dg~~I~iwd~~----~~~~~~~~~~~~~v~~l~~spd--~l~sgs-~dg~I~vw--d~~t~~--~~~~l~~~h 1063 (1094)
+++.+...++.|.+||+. +.+.+..+.....+..++|+|+ ++++++ .++.|.+| |..+++ .+..+..
T Consensus 244 ~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~-- 321 (343)
T 1ri6_A 244 HLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV-- 321 (343)
T ss_dssp EEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC--
T ss_pred EEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccccc--
Confidence 776555433599999998 2345555655555889999998 677776 68999999 555664 3444432
Q ss_pred CcceEEEEEcCCCC
Q 001349 1064 SGKVQCMALDDNEE 1077 (1094)
Q Consensus 1064 ~~~I~~l~~Spdg~ 1077 (1094)
.....+++|.++.+
T Consensus 322 g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 322 GQGPMWVVVNAHEG 335 (343)
T ss_dssp SSSCCEEEEEEEC-
T ss_pred CCCCeeEEEEcccC
Confidence 24567888887654
No 151
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.73 E-value=5.4e-15 Score=169.36 Aligned_cols=278 Identities=10% Similarity=0.117 Sum_probs=178.0
Q ss_pred CcEEEEee----CCCCeEEEeCC----cceeecccCCCcEEEEEEeCC--EEEEEECC----CeEEEEecCC--CcceeE
Q 001349 785 MVKVLSNG----HDSSADFWNHR----ELVHVDSSENGKVLSIACFRD--KIFSGHSD----GTIKVWTGRG--SILHLI 848 (1094)
Q Consensus 785 ~~~l~s~s----~dg~I~vWd~~----~~~~~~~~h~~~V~~l~fspd--~LaSgs~D----g~I~vWd~~t--~~~~~~ 848 (1094)
..+++.|+ .++.|.+|.+. ........|...+..++|+|| +|++++.+ |.|.+|++.. +....+
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~ 92 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL 92 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence 34566664 35689999774 111111126778889999997 78888876 8999998865 544555
Q ss_pred EEecccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCc-eE---EEEecccCccc--eeeeecCceEEEeeCCCeEE
Q 001349 849 QQIREHTKAVTGLAILQSGEMLYSGS-LDKTARVWSIGNEE-IH---CVQVHDIKDQI--QNLAVSNSILCFIPQGAGIK 921 (1094)
Q Consensus 849 ~~l~~H~~~V~sv~fspdg~~LaSgs-~DgtI~vWdi~~~~-~~---~~~~~~~~~~V--~~v~~~~~~~~fspdg~~l~ 921 (1094)
.....+......+++ ++++|++++ .+++|.+|++.... .. .........+. ......+..++|+|+|+.+
T Consensus 93 ~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l- 169 (361)
T 3scy_A 93 NTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYL- 169 (361)
T ss_dssp EEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEE-
T ss_pred eEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEE-
Confidence 555556667788888 888877776 57899999997532 11 00011000000 0000000123367777643
Q ss_pred EEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCce------eEEe-ccceeecCCCCCeEEEEEeCCcc
Q 001349 922 VHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTF------ATIQ-TGHRKLLGKANPVHALQVHNGLV 994 (1094)
Q Consensus 922 ~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~------~~~~-~~~~~~~~h~~~V~sl~fs~~~~ 994 (1094)
++++..++.|.+|++..... +... ........+...+..++|+|++.
T Consensus 170 --------------------------~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~ 223 (361)
T 3scy_A 170 --------------------------LADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGK 223 (361)
T ss_dssp --------------------------EEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSS
T ss_pred --------------------------EEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCC
Confidence 33344578899998875442 1110 00011223345678999999999
Q ss_pred EEEEEECCCCEEEEEECCCCeE--EEEec----CCCCEEEEEEeCC--EEEEEEc--CCeEEEEECC--CCc--EEEEec
Q 001349 995 YTASTSLDGAAVKMWSTSNYNM--VGSLP----TLSEVRAMVVSSE--LVYLGCK--GGTVEIWDQK--RQI--RIETLQ 1060 (1094)
Q Consensus 995 ~las~s~Dg~~I~iwd~~~~~~--~~~~~----~~~~v~~l~~spd--~l~sgs~--dg~I~vwd~~--t~~--~~~~l~ 1060 (1094)
+++..+..++.|.+||+.++.. +..+. +...+..++|+|| +++++.. ++.|.+|++. +++ .+..+.
T Consensus 224 ~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~ 303 (361)
T 3scy_A 224 FAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL 303 (361)
T ss_dssp EEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE
T ss_pred EEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec
Confidence 8877775445999999987754 33332 2355789999999 6766655 4899999985 454 444453
Q ss_pred ccCCcceEEEEEcCCCCEEEEEe-CCCcEEEEeC
Q 001349 1061 TGTSGKVQCMALDDNEEFLVIGT-SDGRIQAWGL 1093 (1094)
Q Consensus 1061 ~~h~~~I~~l~~Spdg~~L~sgs-~DG~I~iWdl 1093 (1094)
. ...+.+++|+|||++|++++ .++.|.+|++
T Consensus 304 -~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~ 335 (361)
T 3scy_A 304 -T-GIHPRNFIITPNGKYLLVACRDTNVIQIFER 335 (361)
T ss_dssp -C-SSCCCEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred -C-CCCCceEEECCCCCEEEEEECCCCCEEEEEE
Confidence 2 45788999999999988887 6789999754
No 152
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.72 E-value=5e-16 Score=176.00 Aligned_cols=239 Identities=9% Similarity=0.039 Sum_probs=164.0
Q ss_pred EEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccC-CCeEEEEEecCCCEEE-EEeCCCcEEEEECCCCceEEEEe
Q 001349 819 IACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHT-KAVTGLAILQSGEMLY-SGSLDKTARVWSIGNEEIHCVQV 894 (1094)
Q Consensus 819 l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~-~~V~sv~fspdg~~La-Sgs~DgtI~vWdi~~~~~~~~~~ 894 (1094)
++++++ ++++++.+++|++||..++ +.+..+..+. ..+..++|+|+|++++ +++.++.|.+||+.+++......
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASD--TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTT--EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCC--cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 445554 8899999999999999998 6666665443 2578999999998664 55578999999999886332222
Q ss_pred ccc-----CccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeE
Q 001349 895 HDI-----KDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFAT 969 (1094)
Q Consensus 895 ~~~-----~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~ 969 (1094)
... ...+.. +.|+|+|+.+++...+... ... .-+..++.|.+||+.+++...
T Consensus 83 ~~~~~~~~~~~~~~-------~~~spdg~~l~~~~~~~~~--------------~~~--~~~~~~~~i~~~d~~~~~~~~ 139 (349)
T 1jmx_B 83 LSSVPGEVGRSMYS-------FAISPDGKEVYATVNPTQR--------------LND--HYVVKPPRLEVFSTADGLEAK 139 (349)
T ss_dssp SCCSTTEEEECSSC-------EEECTTSSEEEEEEEEEEE--------------CSS--CEEECCCEEEEEEGGGGGGBC
T ss_pred cccccccccccccc-------eEECCCCCEEEEEcccccc--------------ccc--ccccCCCeEEEEECCCccccc
Confidence 111 111333 4489999876554422000 000 001224899999998854321
Q ss_pred EeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCC-------------------------
Q 001349 970 IQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLS------------------------- 1024 (1094)
Q Consensus 970 ~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~------------------------- 1024 (1094)
.. ... .+...+.+++|+|++.++ .++ + .|.+||..+++.+..+....
T Consensus 140 ~~---~~~-~~~~~~~~~~~s~dg~l~-~~~--~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (349)
T 1jmx_B 140 PV---RTF-PMPRQVYLMRAADDGSLY-VAG--P-DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFS 211 (349)
T ss_dssp CS---EEE-ECCSSCCCEEECTTSCEE-EES--S-SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEE
T ss_pred ee---eec-cCCCcccceeECCCCcEE-Ecc--C-cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEE
Confidence 11 111 223468889999999844 442 2 59999999988777665221
Q ss_pred --------------------------------------------CEEEEEEeC-C--EEEEEEcCCeEEEEECCCCcEEE
Q 001349 1025 --------------------------------------------EVRAMVVSS-E--LVYLGCKGGTVEIWDQKRQIRIE 1057 (1094)
Q Consensus 1025 --------------------------------------------~v~~l~~sp-d--~l~sgs~dg~I~vwd~~t~~~~~ 1057 (1094)
.+..++++| | +++++ ++.|++||+.+++.+.
T Consensus 212 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~ 289 (349)
T 1jmx_B 212 MLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIK 289 (349)
T ss_dssp EEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEE
T ss_pred eeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEE
Confidence 244566778 7 66666 8899999999999888
Q ss_pred EecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1058 TLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1058 ~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
.+..+ ..+.+++|+|||++|++++.++.|++||+.
T Consensus 290 ~~~~~--~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~ 324 (349)
T 1jmx_B 290 AANLD--HTYYCVAFDKKGDKLYLGGTFNDLAVFNPD 324 (349)
T ss_dssp EEECS--SCCCEEEECSSSSCEEEESBSSEEEEEETT
T ss_pred EEcCC--CCccceEECCCCCEEEEecCCCeEEEEecc
Confidence 87533 357899999999999988899999999973
No 153
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.72 E-value=6.6e-16 Score=182.13 Aligned_cols=201 Identities=11% Similarity=0.076 Sum_probs=147.3
Q ss_pred cccccccccCcEEEEeeCCCCeEEEeCCccee-----------------ecccCCCcEEEEEEeCC--EEE----EEECC
Q 001349 776 RKYSPLAFEMVKVLSNGHDSSADFWNHRELVH-----------------VDSSENGKVLSIACFRD--KIF----SGHSD 832 (1094)
Q Consensus 776 ~~~~~~~~d~~~l~s~s~dg~I~vWd~~~~~~-----------------~~~~h~~~V~~l~fspd--~La----Sgs~D 832 (1094)
.+...++.++..+++++.++ +++|+...... ....|.+.|++++|+|+ +|+ +|+.|
T Consensus 39 ~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d 117 (434)
T 2oit_A 39 SSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYG 117 (434)
T ss_dssp CBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTE
T ss_pred ccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCC
Confidence 34556677788999999888 88887542110 11235678999999996 777 78899
Q ss_pred CeEEEEecCCC-----c----ceeEEEecccCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCceEEEEecccCccce
Q 001349 833 GTIKVWTGRGS-----I----LHLIQQIREHTKAVTGLAILQS-GEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQ 902 (1094)
Q Consensus 833 g~I~vWd~~t~-----~----~~~~~~l~~H~~~V~sv~fspd-g~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~ 902 (1094)
|+|+|||+.++ . ...+..+.+|.+.|++++|+|+ +.+|++++.||+|++||++++. .......+...|.
T Consensus 118 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~-~~~~~~~~~~~v~ 196 (434)
T 2oit_A 118 SIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETV-KVCATLPSTVAVT 196 (434)
T ss_dssp EEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSE-EEEEEECGGGCEE
T ss_pred ceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCc-ceeeccCCCCcee
Confidence 99999998653 1 1235667789999999999997 8999999999999999999874 2233344566777
Q ss_pred eeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceee-cCCC
Q 001349 903 NLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKL-LGKA 981 (1094)
Q Consensus 903 ~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~-~~h~ 981 (1094)
+++ |+|+|+. +++|+.||.|++||++ +.....+..+... ..|.
T Consensus 197 ~v~-------wspdg~~----------------------------lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~ 240 (434)
T 2oit_A 197 SVC-------WSPKGKQ----------------------------LAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHP 240 (434)
T ss_dssp EEE-------ECTTSSC----------------------------EEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSC
T ss_pred EEE-------EcCCCCE----------------------------EEEEcCCCcEEEEccC-CcccccccCCcccCCCCc
Confidence 777 8888774 7889999999999998 5544333222111 1244
Q ss_pred CCeEEEEEeCCccEEEEEE-CCC-----CEEEEEECCCC
Q 001349 982 NPVHALQVHNGLVYTASTS-LDG-----AAVKMWSTSNY 1014 (1094)
Q Consensus 982 ~~V~sl~fs~~~~~las~s-~Dg-----~~I~iwd~~~~ 1014 (1094)
..|.++.|++++.++++.+ .+| ..+++||+++.
T Consensus 241 ~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 241 VRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred eeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 5899999999988886654 332 24999999864
No 154
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.71 E-value=4.6e-18 Score=149.10 Aligned_cols=73 Identities=47% Similarity=0.894 Sum_probs=67.9
Q ss_pred CCCCceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHHHHhCC
Q 001349 159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNP 232 (1094)
Q Consensus 159 ~~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~~~~~ 232 (1094)
.++++|.||||+++|.|||+++|||+||+.||.+|+..+...||.||+.+....+. ||..|+++|+.|+++++
T Consensus 4 ~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~-~n~~l~~~i~~~~~~~~ 76 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLT-PNYVLKSLIALWCESNG 76 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCE-ECTTTHHHHHHHHHHSC
T ss_pred CCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCc-cCHHHHHHHHHHHHHcC
Confidence 46779999999999999999999999999999999987677899999999988887 99999999999998765
No 155
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.71 E-value=6.3e-18 Score=169.34 Aligned_cols=75 Identities=25% Similarity=0.426 Sum_probs=68.4
Q ss_pred CCCCceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHHHHhCCCC
Q 001349 159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPGG 234 (1094)
Q Consensus 159 ~~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~~~~~~~ 234 (1094)
.+|++|.||||+++|.|||+++|||+||+.||..||..+..+||.|+++++...++ ||..|+++|+.|+..++..
T Consensus 102 ~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~-pN~~Lk~~Ie~~~~~~~~~ 176 (179)
T 2f42_A 102 EIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLI-PNLAMKEVIDAFIQENGWV 176 (179)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCE-ECHHHHHHHHHHHHHCTTC
T ss_pred CCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCc-chHHHHHHHHHHHHHCCCc
Confidence 45679999999999999999999999999999999987544799999999998997 9999999999999988653
No 156
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.71 E-value=9.8e-16 Score=192.23 Aligned_cols=260 Identities=12% Similarity=0.009 Sum_probs=185.2
Q ss_pred cccccccccCcEEEEeeCCCCeEEEeCCcc-eeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCC-----Cccee
Q 001349 776 RKYSPLAFEMVKVLSNGHDSSADFWNHREL-VHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRG-----SILHL 847 (1094)
Q Consensus 776 ~~~~~~~~d~~~l~s~s~dg~I~vWd~~~~-~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t-----~~~~~ 847 (1094)
+....+++| .+++.+ .++.|++||..+. ...+..+.+.+.+++|+|| .|++ +.|+.|++||+.+ + ..
T Consensus 84 v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~~~~~~~g--~~ 158 (706)
T 2z3z_A 84 SFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAY-VRNHNLYIARGGKLGEGMS--RA 158 (706)
T ss_dssp CEEEEETTT-TEEEEE-ETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEE-EETTEEEEEECBCTTSCCC--CC
T ss_pred ceeEEECCC-CeEEEE-ECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEE-EECCeEEEEecCcccccCC--Cc
Confidence 344567778 655555 4599999999742 3344567788999999997 7777 4789999999998 7 34
Q ss_pred EEEecccCCC--------------eEEEEEecCCCEEEEEe---------------------------------CCCcEE
Q 001349 848 IQQIREHTKA--------------VTGLAILQSGEMLYSGS---------------------------------LDKTAR 880 (1094)
Q Consensus 848 ~~~l~~H~~~--------------V~sv~fspdg~~LaSgs---------------------------------~DgtI~ 880 (1094)
......+... +.++.|||||++|++++ .+++|+
T Consensus 159 ~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~ 238 (706)
T 2z3z_A 159 IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVG 238 (706)
T ss_dssp EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEE
T ss_pred EEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEE
Confidence 4433333333 48899999999999998 457899
Q ss_pred EEECCCCceEEEEec-ccCccceeeeecCceEEEeeCCCeEEEEEeCC-----eEEEEcCCCC-----------------
Q 001349 881 VWSIGNEEIHCVQVH-DIKDQIQNLAVSNSILCFIPQGAGIKVHLRNG-----KTKLLNSSKY----------------- 937 (1094)
Q Consensus 881 vWdi~~~~~~~~~~~-~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g-----~i~l~~~~~~----------------- 937 (1094)
+||+.+++...+... .+...+..+. |+|||+.+++...++ .+.+|+....
T Consensus 239 ~~d~~~~~~~~~~~~~~~~~~~~~~~-------~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~ 311 (706)
T 2z3z_A 239 IYHLATGKTVYLQTGEPKEKFLTNLS-------WSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEP 311 (706)
T ss_dssp EEETTTTEEEECCCCSCTTCEEEEEE-------ECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCC
T ss_pred EEECCCCceEeeccCCCCceeEeeEE-------EECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECc
Confidence 999999864333221 2344566666 999999998877665 7777775332
Q ss_pred ceEEEEeC---C-EEEEEEcCCeEEEEECC-CCceeEEeccceeecCCCCCeEE-EEEeCCccEEEEEECCCC----EEE
Q 001349 938 PKCLALVQ---G-KVYCGCQDGAIQEIDLA-TGTFATIQTGHRKLLGKANPVHA-LQVHNGLVYTASTSLDGA----AVK 1007 (1094)
Q Consensus 938 v~~l~~s~---~-~l~sgs~Dg~I~iwDl~-~~~~~~~~~~~~~~~~h~~~V~s-l~fs~~~~~las~s~Dg~----~I~ 1007 (1094)
+.++.|++ + .+++++.||.+++|++. ++... ..+..|...+.. +.|+|++..++..+.+++ .|.
T Consensus 312 ~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~------~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~ 385 (706)
T 2z3z_A 312 LHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLI------RQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFY 385 (706)
T ss_dssp CSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEE------EECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEE
T ss_pred cCCceeecCCCCEEEEEEccCCccEEEEEECCCCEE------EecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEE
Confidence 23456764 3 47778888999999876 45544 344556667876 799999987776665543 778
Q ss_pred EEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEc-C---CeEEEEECCCCc
Q 001349 1008 MWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCK-G---GTVEIWDQKRQI 1054 (1094)
Q Consensus 1008 iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~-d---g~I~vwd~~t~~ 1054 (1094)
.||..++. ...+.+...+..++|+|| +++.++. + +.|++||+.+++
T Consensus 386 ~~d~~~~~-~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 386 CIDIKGGK-TKDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EEETTCCC-CEESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred EEEcCCCC-ceeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 88887765 455667778999999998 5555433 3 569999998887
No 157
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.69 E-value=2.6e-16 Score=197.95 Aligned_cols=240 Identities=8% Similarity=0.023 Sum_probs=168.8
Q ss_pred CcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCC---CeEEEEEecCCCEEEEEeCC---------CcE
Q 001349 814 GKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTK---AVTGLAILQSGEMLYSGSLD---------KTA 879 (1094)
Q Consensus 814 ~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~---~V~sv~fspdg~~LaSgs~D---------gtI 879 (1094)
..+.+++|+|| ++++ +.||+|++||+.++ +....+..|.. .|.+++|||||++|++++.+ +.|
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g--~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i 93 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETN--TSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYY 93 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGC--CCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEE
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCC--cEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeE
Confidence 34678899997 5555 78999999999998 55666666665 49999999999999999875 778
Q ss_pred EEEECCCCceEEEEecc-cCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEE
Q 001349 880 RVWSIGNEEIHCVQVHD-IKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQ 958 (1094)
Q Consensus 880 ~vWdi~~~~~~~~~~~~-~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~ 958 (1094)
.+||+.+++...+.... +...+..+. |+|||+.+ +.++. +.|+
T Consensus 94 ~~~d~~~~~~~~l~~~~~~~~~~~~~~-------~SPdG~~l----------------------------a~~~~-~~i~ 137 (723)
T 1xfd_A 94 VLSKIPHGDPQSLDPPEVSNAKLQYAG-------WGPKGQQL----------------------------IFIFE-NNIY 137 (723)
T ss_dssp EEEESSSCCCEECCCTTCCSCCCSBCC-------BCSSTTCE----------------------------EEEET-TEEE
T ss_pred EEEECCCCceEeccCCccccccccccE-------ECCCCCEE----------------------------EEEEC-CeEE
Confidence 89999998643332221 222355555 99999864 34443 6888
Q ss_pred EEECCCCceeEEecccee---ecCCC---------CCeEEEEEeCCccEEEEEECCC-----------------------
Q 001349 959 EIDLATGTFATIQTGHRK---LLGKA---------NPVHALQVHNGLVYTASTSLDG----------------------- 1003 (1094)
Q Consensus 959 iwDl~~~~~~~~~~~~~~---~~~h~---------~~V~sl~fs~~~~~las~s~Dg----------------------- 1003 (1094)
+||+.+++.......... +.++. ..+.++.|+||+.+++.++.++
T Consensus 138 ~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (723)
T 1xfd_A 138 YCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYH 217 (723)
T ss_dssp EESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEE
T ss_pred EEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceecc
Confidence 999888776533221100 01111 1337899999999988887542
Q ss_pred ----------CEEEEEECCCCeEEEEecC-------CCCEEEEEEeCC--EEEEEEc----CCeEEEEECCCCcEEEEec
Q 001349 1004 ----------AAVKMWSTSNYNMVGSLPT-------LSEVRAMVVSSE--LVYLGCK----GGTVEIWDQKRQIRIETLQ 1060 (1094)
Q Consensus 1004 ----------~~I~iwd~~~~~~~~~~~~-------~~~v~~l~~spd--~l~sgs~----dg~I~vwd~~t~~~~~~l~ 1060 (1094)
..|++||+.+++....+.. ...+..++|+|| ++++.+. +..|++||+.+++....+.
T Consensus 218 ~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~ 297 (723)
T 1xfd_A 218 YPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHE 297 (723)
T ss_dssp CCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEE
T ss_pred CCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEE
Confidence 1799999998876555552 456889999999 5555543 3579999999998777664
Q ss_pred ccCCcceE----EEEEcCCCCEEEE--EeCCC------cEEEEe
Q 001349 1061 TGTSGKVQ----CMALDDNEEFLVI--GTSDG------RIQAWG 1092 (1094)
Q Consensus 1061 ~~h~~~I~----~l~~Spdg~~L~s--gs~DG------~I~iWd 1092 (1094)
..+.+.+. .++|||||+.|+. +..+| .|.+||
T Consensus 298 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 298 DESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS 341 (723)
T ss_dssp EECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred eccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence 34444443 8899999997764 45677 566676
No 158
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.69 E-value=6e-16 Score=189.72 Aligned_cols=230 Identities=10% Similarity=0.075 Sum_probs=168.8
Q ss_pred CCCcEEEEEEeCC--EEEEEEC-CCeEEEEecCCCcceeEEEecccC-CCeEEEEEecCCCEEEEEeC---CCcEEEEEC
Q 001349 812 ENGKVLSIACFRD--KIFSGHS-DGTIKVWTGRGSILHLIQQIREHT-KAVTGLAILQSGEMLYSGSL---DKTARVWSI 884 (1094)
Q Consensus 812 h~~~V~~l~fspd--~LaSgs~-Dg~I~vWd~~t~~~~~~~~l~~H~-~~V~sv~fspdg~~LaSgs~---DgtI~vWdi 884 (1094)
+..+|++++|+|| .|++++. ||+++||++.++ .. ..+..|. ..|.+++|+|| +++++++. +...++|.+
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g--~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~ 95 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG--ET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKV 95 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT--EE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCC--Cc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEE
Confidence 3567999999997 8888776 999999999777 33 4455555 68999999999 78887775 555667655
Q ss_pred CC---CceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEE
Q 001349 885 GN---EEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEID 961 (1094)
Q Consensus 885 ~~---~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwD 961 (1094)
+. +... .... ...+... .|+|+|+.+ +++.+.++.+.+||
T Consensus 96 ~~~~~g~~~--~l~~-~~~~~~~-------~~s~dg~~~---------------------------~~~s~~~~~~~l~d 138 (582)
T 3o4h_A 96 NTSRPGEEQ--RLEA-VKPMRIL-------SGVDTGEAV---------------------------VFTGATEDRVALYA 138 (582)
T ss_dssp ETTSTTCCE--ECTT-SCSBEEE-------EEEECSSCE---------------------------EEEEECSSCEEEEE
T ss_pred eccCCCccc--cccC-CCCceee-------eeCCCCCeE---------------------------EEEecCCCCceEEE
Confidence 43 2212 1111 1122222 388888753 33344445555999
Q ss_pred CCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCC---CEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EE
Q 001349 962 LATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG---AAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LV 1036 (1094)
Q Consensus 962 l~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg---~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l 1036 (1094)
+.+++..... .+.. .++.|+||+.++++++.++ ..|++||+.+++...-..+...+..++|||| .+
T Consensus 139 ~~~g~~~~l~-------~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l 209 (582)
T 3o4h_A 139 LDGGGLRELA-------RLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVT 209 (582)
T ss_dssp EETTEEEEEE-------EESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEE
T ss_pred ccCCcEEEee-------cCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEE
Confidence 9988765322 1222 7899999999999777651 3799999998887644447778999999999 78
Q ss_pred EEEEcCC--eEEEEECCCCcEEEEecccCCcceEEEE--------EcCCCCEEEEEeCCCcEEEEeC
Q 001349 1037 YLGCKGG--TVEIWDQKRQIRIETLQTGTSGKVQCMA--------LDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1037 ~sgs~dg--~I~vwd~~t~~~~~~l~~~h~~~I~~l~--------~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
+++..++ .|++||+.+++.. .+ .+|...+..++ |+|||.++++++.||++++|++
T Consensus 210 ~~~~~~~~~~i~~~d~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 210 AGLETAREARLVTVDPRDGSVE-DL-ELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp EEEECSSCEEEEEECTTTCCEE-EC-CCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred EEccCCCeeEEEEEcCCCCcEE-Ec-cCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 8777888 8999999999877 55 57777777777 9999999999999999999985
No 159
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.67 E-value=1.6e-14 Score=163.56 Aligned_cols=261 Identities=9% Similarity=0.024 Sum_probs=178.9
Q ss_pred cccccCcEEEEeeCCCCeEEEeCCc--ceeecccCC-CcEEEEEEeCC--E-EEEEECCCeEEEEecCCCcceeEEEecc
Q 001349 780 PLAFEMVKVLSNGHDSSADFWNHRE--LVHVDSSEN-GKVLSIACFRD--K-IFSGHSDGTIKVWTGRGSILHLIQQIRE 853 (1094)
Q Consensus 780 ~~~~d~~~l~s~s~dg~I~vWd~~~--~~~~~~~h~-~~V~~l~fspd--~-LaSgs~Dg~I~vWd~~t~~~~~~~~l~~ 853 (1094)
.+..++..+++++.++.|.+||..+ ....+..+. ..+..++|+|+ + ++++..++.|.+||+.++ +.+..+..
T Consensus 6 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~--~~~~~~~~ 83 (349)
T 1jmx_B 6 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC--KNTFHANL 83 (349)
T ss_dssp CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT--EEEEEEES
T ss_pred cccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCC--cEEEEEEc
Confidence 3456678899999999999999873 333333332 35789999986 4 456667899999999988 55655543
Q ss_pred c------CCCeEEEEEecCCCEEEEEeCC------------CcEEEEECCCCce-EEEEecccCccceeeeecCceEEEe
Q 001349 854 H------TKAVTGLAILQSGEMLYSGSLD------------KTARVWSIGNEEI-HCVQVHDIKDQIQNLAVSNSILCFI 914 (1094)
Q Consensus 854 H------~~~V~sv~fspdg~~LaSgs~D------------gtI~vWdi~~~~~-~~~~~~~~~~~V~~v~~~~~~~~fs 914 (1094)
+ ...+..++|+|||+++++++.+ +.|.+||+.+++. ...........+.++. |+
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-------~s 156 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMR-------AA 156 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEE-------EC
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCccccee-------EC
Confidence 2 2337889999999999999865 8999999987541 1122222233455555 99
Q ss_pred eCCCeEEEEEeCCeEEEEcCCCCc--eEEEEeC---------------------C---EE--EEEE-----------cCC
Q 001349 915 PQGAGIKVHLRNGKTKLLNSSKYP--KCLALVQ---------------------G---KV--YCGC-----------QDG 955 (1094)
Q Consensus 915 pdg~~l~~~~~~g~i~l~~~~~~v--~~l~~s~---------------------~---~l--~sgs-----------~Dg 955 (1094)
|+|+ +.+. ++.+.+|+....- ..+.... . .. +.-+ ...
T Consensus 157 ~dg~-l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 233 (349)
T 1jmx_B 157 DDGS-LYVA--GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLY 233 (349)
T ss_dssp TTSC-EEEE--SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEE
T ss_pred CCCc-EEEc--cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccce
Confidence 9998 5553 4458888764321 1111110 0 00 0001 011
Q ss_pred eEEEEECCCCceeEEeccceeecCCCCCeEEEEEeC-CccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC
Q 001349 956 AIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN-GLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE 1034 (1094)
Q Consensus 956 ~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~-~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd 1034 (1094)
.+..+|..+++.... .+..+...+..++|+| ++.+++++ ++ .|.+||+.+++.+..+.....+.+++|+|+
T Consensus 234 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~sp~dg~~l~~~--~~-~v~~~d~~~~~~~~~~~~~~~~~~~~~s~d 305 (349)
T 1jmx_B 234 GYLSVDLKTGKTHTQ-----EFADLTELYFTGLRSPKDPNQIYGV--LN-RLAKYDLKQRKLIKAANLDHTYYCVAFDKK 305 (349)
T ss_dssp EEEEEETTTCCEEEE-----EEEECSSCEEEEEECSSCTTEEEEE--ES-EEEEEETTTTEEEEEEECSSCCCEEEECSS
T ss_pred eEEEEeccCCcEEec-----ccccCCCcceeeEecCCCCCEEEEE--cC-eEEEEECccCeEEEEEcCCCCccceEECCC
Confidence 223366666654321 1223456788999999 99888877 54 999999999999888886667889999998
Q ss_pred --EEEEEEcCCeEEEEECCCCcEEEEec
Q 001349 1035 --LVYLGCKGGTVEIWDQKRQIRIETLQ 1060 (1094)
Q Consensus 1035 --~l~sgs~dg~I~vwd~~t~~~~~~l~ 1060 (1094)
++++++.++.|++||..+++.+..+.
T Consensus 306 g~~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 306 GDKLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp SSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred CCEEEEecCCCeEEEEeccccceeeeee
Confidence 67778889999999999999888885
No 160
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.67 E-value=2e-15 Score=177.92 Aligned_cols=249 Identities=10% Similarity=0.121 Sum_probs=163.0
Q ss_pred CCeEEEeCCcceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCc--------ceeEEE-----ecccCCCeE
Q 001349 795 SSADFWNHRELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI--------LHLIQQ-----IREHTKAVT 859 (1094)
Q Consensus 795 g~I~vWd~~~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~--------~~~~~~-----l~~H~~~V~ 859 (1094)
+.+++|+... ..+...++.++++++ ++++|+.|| |+||+..... ...+.. ...|.+.|+
T Consensus 23 ~~vri~~~~~-----~~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 96 (434)
T 2oit_A 23 KKVRIFDSPE-----ELPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIH 96 (434)
T ss_dssp CEEECSCCCS-----SCCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEE
T ss_pred eeEEecCCcc-----ccCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCccc
Confidence 4678876532 123456788999985 899999888 8998753110 001111 123667899
Q ss_pred EEEEecCCCEEE----EEeCCCcEEEEECCCC-----c----eEEEE-ecccCccceeeeecCceEEEeeCCCeEEEEEe
Q 001349 860 GLAILQSGEMLY----SGSLDKTARVWSIGNE-----E----IHCVQ-VHDIKDQIQNLAVSNSILCFIPQGAGIKVHLR 925 (1094)
Q Consensus 860 sv~fspdg~~La----Sgs~DgtI~vWdi~~~-----~----~~~~~-~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~ 925 (1094)
+++|+|+|++|+ +|+.|++|+|||+.++ + ..... ...|...|.++. |+|++.
T Consensus 97 ~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~-------~~p~~~------- 162 (434)
T 2oit_A 97 HLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMK-------WNPTVP------- 162 (434)
T ss_dssp EEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEE-------ECSSCT-------
T ss_pred EEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEE-------ECCCCC-------
Confidence 999999999999 7889999999998764 1 01111 122344555555 555421
Q ss_pred CCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCE
Q 001349 926 NGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAA 1005 (1094)
Q Consensus 926 ~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~ 1005 (1094)
..+++++.||+|++||++++... ....+|...|++++|+|++.++++++.|| +
T Consensus 163 --------------------~~las~s~Dg~v~iwD~~~~~~~------~~~~~~~~~v~~v~wspdg~~lasgs~dg-~ 215 (434)
T 2oit_A 163 --------------------SMVAVCLADGSIAVLQVTETVKV------CATLPSTVAVTSVCWSPKGKQLAVGKQNG-T 215 (434)
T ss_dssp --------------------TEEEEEETTSCEEEEEESSSEEE------EEEECGGGCEEEEEECTTSSCEEEEETTS-C
T ss_pred --------------------CEEEEEECCCeEEEEEcCCCcce------eeccCCCCceeEEEEcCCCCEEEEEcCCC-c
Confidence 24889999999999999988554 33456788999999999999999999997 9
Q ss_pred EEEEECCCCeEEEEec-C-------CCCEEEEEEeCC--EEE-EEEcCC------eEEEEECCCCc-----EEEEecc--
Q 001349 1006 VKMWSTSNYNMVGSLP-T-------LSEVRAMVVSSE--LVY-LGCKGG------TVEIWDQKRQI-----RIETLQT-- 1061 (1094)
Q Consensus 1006 I~iwd~~~~~~~~~~~-~-------~~~v~~l~~spd--~l~-sgs~dg------~I~vwd~~t~~-----~~~~l~~-- 1061 (1094)
|++||.+ ++....+. + ...+.++.|+++ +++ .++.+| .+++|++.+.+ ....+..
T Consensus 216 v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~ 294 (434)
T 2oit_A 216 VVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPC 294 (434)
T ss_dssp EEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSS
T ss_pred EEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCC
Confidence 9999998 55555554 2 127899999998 332 244443 38999987642 2222211
Q ss_pred ----cCCcceEEEEEcCCCCEEEEEeC-CCcEEEE
Q 001349 1062 ----GTSGKVQCMALDDNEEFLVIGTS-DGRIQAW 1091 (1094)
Q Consensus 1062 ----~h~~~I~~l~~Spdg~~L~sgs~-DG~I~iW 1091 (1094)
+...+-..+.+-+|.+++++++. .+.|.++
T Consensus 295 ~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl 329 (434)
T 2oit_A 295 YGSCTERQHHYYLSYIEEWDLVLAASAASTEVSIL 329 (434)
T ss_dssp CCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEE
T ss_pred CCCCCCcCcceeeehhccCCEEEEecCCCCceeEE
Confidence 12222233444477777766654 3334443
No 161
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.67 E-value=2.6e-14 Score=162.57 Aligned_cols=242 Identities=11% Similarity=0.148 Sum_probs=159.2
Q ss_pred cccccccCcEEEEeeC---CCCeEEEeCCc----ceeecccCCCcEEEEEEeCC--EEEEEE-CCCeEEEEecC-CCcce
Q 001349 778 YSPLAFEMVKVLSNGH---DSSADFWNHRE----LVHVDSSENGKVLSIACFRD--KIFSGH-SDGTIKVWTGR-GSILH 846 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~---dg~I~vWd~~~----~~~~~~~h~~~V~~l~fspd--~LaSgs-~Dg~I~vWd~~-t~~~~ 846 (1094)
...+++|++ +++++. ++.|.+|++.. .......|...+..++|+|+ +|++++ .+++|.+||+. ++...
T Consensus 44 ~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~ 122 (347)
T 3hfq_A 44 YLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALT 122 (347)
T ss_dssp CEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEE
T ss_pred eEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCee
Confidence 355677888 555544 68999999862 22333457788899999997 777777 78999999995 44334
Q ss_pred eEEEecc---------cCCCeEEEEEecCCCEEEEEeCCCcEEEEECC-CCceEEEEec--ccCccceeeeecCceEEEe
Q 001349 847 LIQQIRE---------HTKAVTGLAILQSGEMLYSGSLDKTARVWSIG-NEEIHCVQVH--DIKDQIQNLAVSNSILCFI 914 (1094)
Q Consensus 847 ~~~~l~~---------H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~-~~~~~~~~~~--~~~~~V~~v~~~~~~~~fs 914 (1094)
.+..+.. +...+.+++|+|||+++++...++.|++|++. +++....... .....+..+ +|+
T Consensus 123 ~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~-------~~s 195 (347)
T 3hfq_A 123 LTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHL-------VFS 195 (347)
T ss_dssp EEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEE-------EEC
T ss_pred ecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceE-------EEC
Confidence 4444432 12348899999999977777778999999998 5543332221 111223333 488
Q ss_pred eCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCC--CceeEEeccceeecC---CCCCeEEEEE
Q 001349 915 PQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLAT--GTFATIQTGHRKLLG---KANPVHALQV 989 (1094)
Q Consensus 915 pdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~--~~~~~~~~~~~~~~~---h~~~V~sl~f 989 (1094)
|||+.+ ++++..++.|.+|++.. ++....... ..... ....+..++|
T Consensus 196 pdg~~l---------------------------~v~~~~~~~v~v~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~i~~ 247 (347)
T 3hfq_A 196 PDGQYA---------------------------FLAGELSSQIASLKYDTQTGAFTQLGIV-KTIPADYTAHNGAAAIRL 247 (347)
T ss_dssp TTSSEE---------------------------EEEETTTTEEEEEEEETTTTEEEEEEEE-ESSCTTCCSCCEEEEEEE
T ss_pred CCCCEE---------------------------EEEeCCCCEEEEEEecCCCCceEEeeee-eecCCCCCCCCcceeEEE
Confidence 888753 33455678888888774 443211100 00000 1135889999
Q ss_pred eCCccEEEE-EECCCCEEEEEECCC---CeEEEEec-CCCCEEEEEEeCC--EEEEEEc-CCeEEEE--ECCCCcEE
Q 001349 990 HNGLVYTAS-TSLDGAAVKMWSTSN---YNMVGSLP-TLSEVRAMVVSSE--LVYLGCK-GGTVEIW--DQKRQIRI 1056 (1094)
Q Consensus 990 s~~~~~las-~s~Dg~~I~iwd~~~---~~~~~~~~-~~~~v~~l~~spd--~l~sgs~-dg~I~vw--d~~t~~~~ 1056 (1094)
+|++.+++. ...+ +.|.+||+.. ...+..+. +...+..++|+|| ++++++. ++.|.+| |..+++..
T Consensus 248 spdG~~l~v~~~~~-~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 248 SHDGHFLYVSNRGY-NTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp CTTSCEEEEEEETT-TEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred CCCCCEEEEEeCCC-CEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 999987744 4445 4999999972 24555555 3566889999998 6777765 5899999 55667654
No 162
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.66 E-value=1.4e-14 Score=166.50 Aligned_cols=268 Identities=9% Similarity=0.079 Sum_probs=172.6
Q ss_pred EEEEeeCC--CCeEEEeCC--cc-eeec----ccCCCcEEEEEEeCC--EEEEEECCCeEEEEecC-CCcceeEEEeccc
Q 001349 787 KVLSNGHD--SSADFWNHR--EL-VHVD----SSENGKVLSIACFRD--KIFSGHSDGTIKVWTGR-GSILHLIQQIREH 854 (1094)
Q Consensus 787 ~l~s~s~d--g~I~vWd~~--~~-~~~~----~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~-t~~~~~~~~l~~H 854 (1094)
+++.|++. +.|.+|+++ +. .... ..+...+..++|+|+ +|++++.+ .|.+||+. ++....+.....+
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 35555553 467777653 21 1111 123457889999997 78888888 99999997 7732222222211
Q ss_pred CCCeEEEEEecCCCE--EEEEe-------------CCCcEEEEECCC-CceE-EEEec--ccCccceeeeecCceEEEee
Q 001349 855 TKAVTGLAILQSGEM--LYSGS-------------LDKTARVWSIGN-EEIH-CVQVH--DIKDQIQNLAVSNSILCFIP 915 (1094)
Q Consensus 855 ~~~V~sv~fspdg~~--LaSgs-------------~DgtI~vWdi~~-~~~~-~~~~~--~~~~~V~~v~~~~~~~~fsp 915 (1094)
+.+..++|+|||++ +++++ .+|++.+|++.. ++.. .+... .....+..+. |+|
T Consensus 83 -g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~sp 154 (365)
T 1jof_A 83 -GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMV-------FDP 154 (365)
T ss_dssp -SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEE-------ECT
T ss_pred -CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEE-------ECC
Confidence 23566899999994 55553 689999999973 5432 12211 1223344444 788
Q ss_pred CCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEE-cCCeEEEEECC-CCceeEEeccceeecCCCCCeEEEEEeCCc
Q 001349 916 QGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGC-QDGAIQEIDLA-TGTFATIQTGHRKLLGKANPVHALQVHNGL 993 (1094)
Q Consensus 916 dg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs-~Dg~I~iwDl~-~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~ 993 (1094)
||+. ++++. .++.|.+||+. +++...... .....|...+..++|+|++
T Consensus 155 dG~~----------------------------l~~~~~~~~~v~~~~~~~~g~~~~~~~--~~~~~~g~~p~~~~~spdg 204 (365)
T 1jof_A 155 TETY----------------------------LYSADLTANKLWTHRKLASGEVELVGS--VDAPDPGDHPRWVAMHPTG 204 (365)
T ss_dssp TSSE----------------------------EEEEETTTTEEEEEEECTTSCEEEEEE--EECSSTTCCEEEEEECTTS
T ss_pred CCCE----------------------------EEEEcCCCCEEEEEEECCCCCEEEeee--EecCCCCCCCCEeEECCCC
Confidence 8875 44433 36789999998 676532211 1111245678999999999
Q ss_pred cEEEEEECCCCEEEEEECC--CCeEE---EEec---CC----C-------CEEEEE-EeCC--EEEEEEcC-C-----eE
Q 001349 994 VYTASTSLDGAAVKMWSTS--NYNMV---GSLP---TL----S-------EVRAMV-VSSE--LVYLGCKG-G-----TV 1045 (1094)
Q Consensus 994 ~~las~s~Dg~~I~iwd~~--~~~~~---~~~~---~~----~-------~v~~l~-~spd--~l~sgs~d-g-----~I 1045 (1094)
.+++.++..++.|.+|++. +++.. ..+. .. . .+..++ |+|| ++++++.+ + .|
T Consensus 205 ~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i 284 (365)
T 1jof_A 205 NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYI 284 (365)
T ss_dssp SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEE
T ss_pred CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeE
Confidence 9888877655699999865 56542 2222 11 2 488999 9998 66666542 3 89
Q ss_pred EEEECC-CCcEEEE--ecccCCcceEEEEEcC---CCCEEEEEeCC-CcEEEEeC
Q 001349 1046 EIWDQK-RQIRIET--LQTGTSGKVQCMALDD---NEEFLVIGTSD-GRIQAWGL 1093 (1094)
Q Consensus 1046 ~vwd~~-t~~~~~~--l~~~h~~~I~~l~~Sp---dg~~L~sgs~D-G~I~iWdl 1093 (1094)
.+|++. +++.... +...+...+..++|+| ||++|++++.+ ++|.+|++
T Consensus 285 ~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~ 339 (365)
T 1jof_A 285 AGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW 339 (365)
T ss_dssp EEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred EEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEE
Confidence 999996 6665432 1123444577899999 89999999865 89999986
No 163
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=5.6e-17 Score=147.03 Aligned_cols=72 Identities=29% Similarity=0.530 Sum_probs=63.5
Q ss_pred CCceeccCccccccCcEEcC-CcccccHHhHHHHHHhC-----CCCCCC--CCcC-CCCCCCCChhHHHHHHHHHHHHhC
Q 001349 161 PKDFVCPITTHIFDDPVTLE-TGQTYERRAIQEWIERG-----NSSCPI--TRQK-LSSTKLPKTNYVLKRLIASWQEQN 231 (1094)
Q Consensus 161 ~~~~~CpIc~~~~~dPv~~~-cGhtfc~~ci~~~~~~~-----~~~CP~--c~~~-~~~~~~~~pN~~l~~~i~~~~~~~ 231 (1094)
+++|.||||+++|.|||+++ |||+||+.||..||..+ ...||+ |++. +...+++ ||..|+++|+.|+..+
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~-pn~~L~~~I~~~~~~~ 83 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLI-QDEALRRAIENHNKKR 83 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEE-ECHHHHHHHHHHHTTC
T ss_pred CcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCc-CCHHHHHHHHHHHHHh
Confidence 45899999999999999995 99999999999999863 347999 7776 8888897 9999999999999876
Q ss_pred CC
Q 001349 232 PG 233 (1094)
Q Consensus 232 ~~ 233 (1094)
..
T Consensus 84 ~r 85 (94)
T 2yu4_A 84 HR 85 (94)
T ss_dssp CS
T ss_pred cc
Confidence 53
No 164
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.65 E-value=9.3e-16 Score=192.92 Aligned_cols=303 Identities=9% Similarity=0.030 Sum_probs=191.2
Q ss_pred cccccccCcEEEEeeCCCCeEEEeCCc--ceeecccCCC---cEEEEEEeCC--EEEEEEC---------CCeEEEEecC
Q 001349 778 YSPLAFEMVKVLSNGHDSSADFWNHRE--LVHVDSSENG---KVLSIACFRD--KIFSGHS---------DGTIKVWTGR 841 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg~I~vWd~~~--~~~~~~~h~~---~V~~l~fspd--~LaSgs~---------Dg~I~vWd~~ 841 (1094)
...+++|+.+++ .+.|+.|++||... ......+|.. .|.+++|||| +|++++. |++|++||+.
T Consensus 20 ~~~~s~dg~~~~-~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLH-QSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEE-ECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEE-EcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 345667885444 45699999999873 3344444433 4899999997 7887766 7999999999
Q ss_pred CCcceeE--EEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCcccee-e---------eecCc
Q 001349 842 GSILHLI--QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQN-L---------AVSNS 909 (1094)
Q Consensus 842 t~~~~~~--~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~-v---------~~~~~ 909 (1094)
++. .+ ..+ ...+..++|||||+.|+.++ |++|++||+.+++...+........+.. . .....
T Consensus 99 ~g~--~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~ 172 (719)
T 1z68_A 99 NGE--FVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKY 172 (719)
T ss_dssp TTE--ECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSC
T ss_pred CCc--cccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcc
Confidence 983 31 222 35688999999999999986 6899999999886433322222111110 0 00012
Q ss_pred eEEEeeCCCeEEEEEeC-CeEEEEc-----CC--CCceEEEEeC-CEEEEEEcCCeEEEEECCCCcee--EEeccceeec
Q 001349 910 ILCFIPQGAGIKVHLRN-GKTKLLN-----SS--KYPKCLALVQ-GKVYCGCQDGAIQEIDLATGTFA--TIQTGHRKLL 978 (1094)
Q Consensus 910 ~~~fspdg~~l~~~~~~-g~i~l~~-----~~--~~v~~l~~s~-~~l~sgs~Dg~I~iwDl~~~~~~--~~~~~~~~~~ 978 (1094)
...|+|||+.++....+ +.+..|. .. ..+..+.+.. +. ...+..|++||+.+++.. ........+.
T Consensus 173 ~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~---~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 249 (719)
T 1z68_A 173 ALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGA---KNPVVRIFIIDTTYPAYVGPQEVPVPAMIA 249 (719)
T ss_dssp CEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTS---CCCEEEEEEEESSCHHHHCCEECCCCHHHH
T ss_pred cEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCC---CCCeeEEEEEECCCCCccceeEccCCccCC
Confidence 34599999999987765 2222221 01 1111122110 00 012237899999987642 1111112345
Q ss_pred CCCCCeEEEEEeCCccEEEEEECCC---CEEEEEE----CCCCeEEEEe-----cCCCCEE-----EEEEeCC--EE-E-
Q 001349 979 GKANPVHALQVHNGLVYTASTSLDG---AAVKMWS----TSNYNMVGSL-----PTLSEVR-----AMVVSSE--LV-Y- 1037 (1094)
Q Consensus 979 ~h~~~V~sl~fs~~~~~las~s~Dg---~~I~iwd----~~~~~~~~~~-----~~~~~v~-----~l~~spd--~l-~- 1037 (1094)
+|...+..++|+||+.++++....+ ..|.+|| ..+++....+ .+...+. .+.|+|| .+ +
T Consensus 250 ~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~ 329 (719)
T 1z68_A 250 SSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKI 329 (719)
T ss_dssp TSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEE
T ss_pred CCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEE
Confidence 6788899999999988777643221 2588899 8777655444 2444555 7899998 33 3
Q ss_pred EEEcCC--eEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCC-----CcEEEEeC
Q 001349 1038 LGCKGG--TVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSD-----GRIQAWGL 1093 (1094)
Q Consensus 1038 sgs~dg--~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~D-----G~I~iWdl 1093 (1094)
++..+| .|++||+.+++ ...+ ..+...+..+.++ +++.|+..+.+ +.+++|.+
T Consensus 330 ~~~~~g~~~l~~~~~~~~~-~~~l-t~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~ 389 (719)
T 1z68_A 330 FSDKDGYKHIHYIKDTVEN-AIQI-TSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRI 389 (719)
T ss_dssp EECTTSCEEEEEESSCSTT-CEEC-SCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEE
T ss_pred EEccCCceEEEEEECCCCc-eEec-ccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEE
Confidence 344555 57778887776 4455 3455568888888 88877766665 88899975
No 165
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.65 E-value=1.6e-14 Score=162.41 Aligned_cols=249 Identities=12% Similarity=0.060 Sum_probs=176.5
Q ss_pred ccccccccCcEE-EEeeCCCCeEEEeCCc--ceeecc-cC----CCcEEEEEEeCC--EEEEEE------------CCCe
Q 001349 777 KYSPLAFEMVKV-LSNGHDSSADFWNHRE--LVHVDS-SE----NGKVLSIACFRD--KIFSGH------------SDGT 834 (1094)
Q Consensus 777 ~~~~~~~d~~~l-~s~s~dg~I~vWd~~~--~~~~~~-~h----~~~V~~l~fspd--~LaSgs------------~Dg~ 834 (1094)
....+++++.++ ++++.++.|.+||..+ ....+. ++ ...+.+++|+|+ ++++++ .++.
T Consensus 37 ~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~ 116 (337)
T 1pby_B 37 MVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTR 116 (337)
T ss_dssp CCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCE
T ss_pred cceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCce
Confidence 345577788765 5566678999999873 222222 22 226778999986 777775 5799
Q ss_pred EEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEe
Q 001349 835 IKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFI 914 (1094)
Q Consensus 835 I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fs 914 (1094)
|.+||+.++ +.+..+.. ...+.+++|+|||++|+++ ++.|.+||+.+++....... ......+. |+
T Consensus 117 i~v~d~~~~--~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~--~~~~~~~~-------~s 182 (337)
T 1pby_B 117 VALYDAETL--SRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPI--QSWEAETY-------AQ 182 (337)
T ss_dssp EEEEETTTT--EEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECS--TTTTTTTB-------CC
T ss_pred EEEEECCCC--cEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeec--cccCCCce-------eC
Confidence 999999988 56666653 4568889999999988888 68899999998863322211 11111112 78
Q ss_pred eCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCC----------eEEEEECCCCceeEEeccceeecCCCCCe
Q 001349 915 PQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDG----------AIQEIDLATGTFATIQTGHRKLLGKANPV 984 (1094)
Q Consensus 915 pdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg----------~I~iwDl~~~~~~~~~~~~~~~~~h~~~V 984 (1094)
|+|..+.+....+....+ ....+..++ .|.+||+.+++.. . ..+..+...+
T Consensus 183 ~dg~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~----~~~~~~~~~~ 243 (337)
T 1pby_B 183 PDVLAVWNQHESSGVMAT--------------PFYTARKDIDPADPTAYRTGLLTMDLETGEMA-M----REVRIMDVFY 243 (337)
T ss_dssp CBCCCCCCCCTTTTEEEE--------------EEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-E----EEEEECSSCE
T ss_pred CCccEEeeeccCCCceee--------------eeeccccccccccccccccceEEEeCCCCCce-E----eecCCCCCce
Confidence 888865444332221100 011122222 6899999998875 2 2334456678
Q ss_pred EEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecc
Q 001349 985 HALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQT 1061 (1094)
Q Consensus 985 ~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~ 1061 (1094)
..++|+|++.+++++ ++ .|.+||+.+++.+..+.....+.+++|+|+ ++++++.++.|++||+.+++.+..+..
T Consensus 244 ~~~~~s~dg~~l~~~--~~-~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 244 FSTAVNPAKTRAFGA--YN-VLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp EEEEECTTSSEEEEE--ES-EEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred eeEEECCCCCEEEEe--CC-eEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 899999999988877 44 999999999999888887777889999998 788888899999999999999888853
No 166
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.64 E-value=7.8e-14 Score=159.63 Aligned_cols=260 Identities=15% Similarity=0.157 Sum_probs=169.7
Q ss_pred cccccccCcEEEEeeCC----CCeEEEeCCc------ceeecccCCCcEEEEEEeCCEEEEEE-CCCeEEEEecCCCc-c
Q 001349 778 YSPLAFEMVKVLSNGHD----SSADFWNHRE------LVHVDSSENGKVLSIACFRDKIFSGH-SDGTIKVWTGRGSI-L 845 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~d----g~I~vWd~~~------~~~~~~~h~~~V~~l~fspd~LaSgs-~Dg~I~vWd~~t~~-~ 845 (1094)
...+++|++++++++.+ +.|.+|++.. .+.....+...+..+++..+++++++ .+++|.+|++.+.. .
T Consensus 54 ~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~ 133 (361)
T 3scy_A 54 YLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTTNGKNIVTANYSGGSITVFPIGQDGAL 133 (361)
T ss_dssp SEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCB
T ss_pred eEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcC
Confidence 45677889999988886 7999998752 12223335667888888445666655 68999999997531 1
Q ss_pred eeEE---Eecc--------cCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCc-------eEE-----EEecccCccc
Q 001349 846 HLIQ---QIRE--------HTKAVTGLAILQSGEMLYSGS-LDKTARVWSIGNEE-------IHC-----VQVHDIKDQI 901 (1094)
Q Consensus 846 ~~~~---~l~~--------H~~~V~sv~fspdg~~LaSgs-~DgtI~vWdi~~~~-------~~~-----~~~~~~~~~V 901 (1094)
..+. ...+ +...+.+++|+|||+++++++ .++.|++|+++... +.. ..........
T Consensus 134 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 213 (361)
T 3scy_A 134 LPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGP 213 (361)
T ss_dssp CSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCE
T ss_pred cccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCC
Confidence 1111 1111 233468899999999776655 48899999987643 111 1111222223
Q ss_pred eeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEE-cCCeEEEEECCCCceeEEeccceeecCC
Q 001349 902 QNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGC-QDGAIQEIDLATGTFATIQTGHRKLLGK 980 (1094)
Q Consensus 902 ~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs-~Dg~I~iwDl~~~~~~~~~~~~~~~~~h 980 (1094)
..+. |+|||+. +++++ .++.|.+||+.++....... ......+
T Consensus 214 ~~~~-------~spdg~~----------------------------l~v~~~~~~~v~v~~~~~g~~~~~~~-~~~~~~~ 257 (361)
T 3scy_A 214 RHLI-------FNSDGKF----------------------------AYLINEIGGTVIAFRYADGMLDEIQT-VAADTVN 257 (361)
T ss_dssp EEEE-------ECTTSSE----------------------------EEEEETTTCEEEEEEEETTEEEEEEE-EESCSSC
T ss_pred eEEE-------EcCCCCE----------------------------EEEEcCCCCeEEEEEecCCceEEeEE-EecCCCC
Confidence 3333 7777775 44444 68899999998775432211 1122334
Q ss_pred CCCeEEEEEeCCccEEEEEECC-CCEEEEEECC--CCe--EEEEecCCCCEEEEEEeCC--EEEEEE-cCCeEEEE--EC
Q 001349 981 ANPVHALQVHNGLVYTASTSLD-GAAVKMWSTS--NYN--MVGSLPTLSEVRAMVVSSE--LVYLGC-KGGTVEIW--DQ 1050 (1094)
Q Consensus 981 ~~~V~sl~fs~~~~~las~s~D-g~~I~iwd~~--~~~--~~~~~~~~~~v~~l~~spd--~l~sgs-~dg~I~vw--d~ 1050 (1094)
......++|+|++.+++.+..+ ++.|.+|++. ++. .+..+.....+..++|+|| ++++++ .++.|.+| |.
T Consensus 258 ~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 258 AQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp CCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred CCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence 4567899999999988776665 4599999995 444 4444545567889999998 677777 67999996 55
Q ss_pred CCCcEEEEecccCCcceEEEEEc
Q 001349 1051 KRQIRIETLQTGTSGKVQCMALD 1073 (1094)
Q Consensus 1051 ~t~~~~~~l~~~h~~~I~~l~~S 1073 (1094)
.+++........+...+.|+.|.
T Consensus 338 ~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 338 ATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp TTCCEEECSCCEECSSEEEEEEE
T ss_pred CCCcEeecceeeeCCCCeEEEEc
Confidence 57776554433355578999886
No 167
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.61 E-value=3.1e-16 Score=173.67 Aligned_cols=76 Identities=26% Similarity=0.451 Sum_probs=69.5
Q ss_pred CCCCCCceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHHHHhCCC
Q 001349 157 KHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPG 233 (1094)
Q Consensus 157 ~~~~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~~~~~~ 233 (1094)
...+|++|.||||+++|.|||+++||||||+.||..|+..+..+||.|+++++...++ ||..|+++|+.|+..++.
T Consensus 202 ~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~-~n~~l~~~i~~~~~~~~~ 277 (281)
T 2c2l_A 202 KRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLI-PNLAMKEVIDAFISENGW 277 (281)
T ss_dssp CCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCE-ECHHHHHHHHHHHTTCSC
T ss_pred CCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCc-ccHHHHHHHHHHHHHCCC
Confidence 3466789999999999999999999999999999999998665699999999988997 999999999999987764
No 168
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.60 E-value=1.6e-13 Score=158.36 Aligned_cols=273 Identities=7% Similarity=-0.054 Sum_probs=176.2
Q ss_pred ccccccCcEEEEeeC-CCC--eEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEe
Q 001349 779 SPLAFEMVKVLSNGH-DSS--ADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQI 851 (1094)
Q Consensus 779 ~~~~~d~~~l~s~s~-dg~--I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l 851 (1094)
..+++||++|++.+. ++. |.+||.. .......+|...+..+.|+|| .|+.++.++.|++||+.++. ....+
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~--~~~~~ 118 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLE--ENVVY 118 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCC--EEEEE
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCc--ceeee
Confidence 568899999999888 675 6666765 334444556555557789997 89999999999999999984 44444
Q ss_pred cccCCCeEEEE--EecCCCEEEEE----------------------eCCCcEEEEECCCCceEEEEecccCccceeeeec
Q 001349 852 REHTKAVTGLA--ILQSGEMLYSG----------------------SLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVS 907 (1094)
Q Consensus 852 ~~H~~~V~sv~--fspdg~~LaSg----------------------s~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~ 907 (1094)
..+...+.... ++|++.+++.. +.++.|.+||+.+++...+.. ....+..+.
T Consensus 119 ~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~--~~~~~~~~~-- 194 (388)
T 3pe7_A 119 QVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQ--ENQWLGHPI-- 194 (388)
T ss_dssp ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEE--ESSCEEEEE--
T ss_pred echhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeec--CCccccccE--
Confidence 45555554444 48999988743 244679999999986544432 234455555
Q ss_pred CceEEEee-CCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCC--CCe
Q 001349 908 NSILCFIP-QGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKA--NPV 984 (1094)
Q Consensus 908 ~~~~~fsp-dg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~--~~V 984 (1094)
|+| ||+.++.....+. ...+..|.++|..++... .+..+. ..+
T Consensus 195 -----~sp~dg~~l~~~~~~~~----------------------~~~~~~l~~~d~~~~~~~-------~l~~~~~~~~~ 240 (388)
T 3pe7_A 195 -----YRPYDDSTVAFCHEGPH----------------------DLVDARMWLINEDGTNMR-------KVKTHAEGESC 240 (388)
T ss_dssp -----EETTEEEEEEEEECSCT----------------------TTSSCSEEEEETTSCCCE-------ESCCCCTTEEE
T ss_pred -----ECCCCCCEEEEEEecCC----------------------CCCcceEEEEeCCCCceE-------EeeeCCCCccc
Confidence 888 8876543322110 001347888887766543 222232 257
Q ss_pred EEEEEeCCccEEEEEEC-CCC---EEEEEECCCCeEEEEecCCCC------EEEEEEeCC--EEEEE---------EcCC
Q 001349 985 HALQVHNGLVYTASTSL-DGA---AVKMWSTSNYNMVGSLPTLSE------VRAMVVSSE--LVYLG---------CKGG 1043 (1094)
Q Consensus 985 ~sl~fs~~~~~las~s~-Dg~---~I~iwd~~~~~~~~~~~~~~~------v~~l~~spd--~l~sg---------s~dg 1043 (1094)
....|+|++..++..+. ++. .|.+||+.+++.......... .....|+|| .++.. ..+.
T Consensus 241 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~ 320 (388)
T 3pe7_A 241 THEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDP 320 (388)
T ss_dssp EEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCC
T ss_pred ccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCC
Confidence 78899999986655443 222 399999998874332221110 111357777 34432 4567
Q ss_pred eEEEEECCCCcEEEEecccCCc-----------ceEEEEEcCCCCEEEEEe-CCCcEEEEeC
Q 001349 1044 TVEIWDQKRQIRIETLQTGTSG-----------KVQCMALDDNEEFLVIGT-SDGRIQAWGL 1093 (1094)
Q Consensus 1044 ~I~vwd~~t~~~~~~l~~~h~~-----------~I~~l~~Spdg~~L~sgs-~DG~I~iWdl 1093 (1094)
.|++||+.+++.. .+ ..|.. .+.+++|+|||+.|+.++ .+|...+|.+
T Consensus 321 ~i~~~d~~~~~~~-~l-~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 321 FLYVFNMKNGTQH-RV-ARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp EEEEEETTTTEEE-EE-EECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred EEEEEeccCCceE-Ee-ccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 8999999988753 34 23444 578899999999887665 5777777754
No 169
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.59 E-value=4.7e-15 Score=186.49 Aligned_cols=236 Identities=13% Similarity=0.072 Sum_probs=160.5
Q ss_pred EEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEecccCC---CeEEEEEecCCCEEEEEeC---------CCcEEEEEC
Q 001349 818 SIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTK---AVTGLAILQSGEMLYSGSL---------DKTARVWSI 884 (1094)
Q Consensus 818 ~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~---~V~sv~fspdg~~LaSgs~---------DgtI~vWdi 884 (1094)
+++|+|+ .++..+.||+|++||+.++ .....+.+|.. .|.+++|||||++|++++. |++|++||+
T Consensus 20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 20 FPNWISGQEYLHQSADNNIVLYNIETG--QSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCEESSSSEEEEECTTSCEEEEESSSC--CEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred ccEECCCCeEEEEcCCCCEEEEEcCCC--cEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence 6789997 5555667999999999998 55555555544 4899999999999999887 789999999
Q ss_pred CCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCC
Q 001349 885 GNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLAT 964 (1094)
Q Consensus 885 ~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~ 964 (1094)
.+++. .........+..+. |+|||+.+ +.+ .|+.|++||+.+
T Consensus 98 ~~g~~--~~~~~l~~~~~~~~-------~SPDG~~l----------------------------a~~-~~~~i~~~~~~~ 139 (719)
T 1z68_A 98 SNGEF--VRGNELPRPIQYLC-------WSPVGSKL----------------------------AYV-YQNNIYLKQRPG 139 (719)
T ss_dssp TTTEE--CCSSCCCSSBCCEE-------ECSSTTCE----------------------------EEE-ETTEEEEESSTT
T ss_pred CCCcc--ccceecCcccccce-------ECCCCCEE----------------------------EEE-ECCeEEEEeCCC
Confidence 99853 10011123444444 99999864 333 367899999988
Q ss_pred CceeEEeccc---eeecCCCCC---------eEEEEEeCCccEEEEEECCCC----------------------------
Q 001349 965 GTFATIQTGH---RKLLGKANP---------VHALQVHNGLVYTASTSLDGA---------------------------- 1004 (1094)
Q Consensus 965 ~~~~~~~~~~---~~~~~h~~~---------V~sl~fs~~~~~las~s~Dg~---------------------------- 1004 (1094)
+......... ..+.||... ..++.|+||+.++++++.|++
T Consensus 140 g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~ 219 (719)
T 1z68_A 140 DPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGA 219 (719)
T ss_dssp SCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTS
T ss_pred CCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCC
Confidence 7765321110 011222222 258999999999998876531
Q ss_pred -----EEEEEECCCCeEE--EEe------c-CCCCEEEEEEeCC--EEEEEEcC----CeEEEEE----CCCCcEEEEec
Q 001349 1005 -----AVKMWSTSNYNMV--GSL------P-TLSEVRAMVVSSE--LVYLGCKG----GTVEIWD----QKRQIRIETLQ 1060 (1094)
Q Consensus 1005 -----~I~iwd~~~~~~~--~~~------~-~~~~v~~l~~spd--~l~sgs~d----g~I~vwd----~~t~~~~~~l~ 1060 (1094)
.|++||+.+++.. ..+ . +...+..++|+|| ++++.... ..|.+|| ..+++....+.
T Consensus 220 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~ 299 (719)
T 1z68_A 220 KNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQE 299 (719)
T ss_dssp CCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGE
T ss_pred CCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEe
Confidence 7889999887642 111 1 5567899999999 44443322 3488999 87776544332
Q ss_pred ---ccCCcceE-----EEEEcCCCCEEEE--EeCCCc--EEEEeC
Q 001349 1061 ---TGTSGKVQ-----CMALDDNEEFLVI--GTSDGR--IQAWGL 1093 (1094)
Q Consensus 1061 ---~~h~~~I~-----~l~~Spdg~~L~s--gs~DG~--I~iWdl 1093 (1094)
.+|.+.+. .+.|+|||+.|+. +..+|. |.+||+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~ 344 (719)
T 1z68_A 300 HIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKD 344 (719)
T ss_dssp EEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESS
T ss_pred cccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEEC
Confidence 36777776 8899999996543 545664 555554
No 170
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.58 E-value=8e-13 Score=151.79 Aligned_cols=284 Identities=11% Similarity=0.142 Sum_probs=181.7
Q ss_pred cCcEEEEee------CCCCeEEEeCCc--ceeecccCCCcEEEEEEeCC--EEEEEE----------CCCeEEEEecCCC
Q 001349 784 EMVKVLSNG------HDSSADFWNHRE--LVHVDSSENGKVLSIACFRD--KIFSGH----------SDGTIKVWTGRGS 843 (1094)
Q Consensus 784 d~~~l~s~s------~dg~I~vWd~~~--~~~~~~~h~~~V~~l~fspd--~LaSgs----------~Dg~I~vWd~~t~ 843 (1094)
++.+++... .|+.|.+||..+ ....+..+..+ .++|+|| ++++++ .+++|.+||..+.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 566555532 478999999763 33444444444 8999997 777765 3678999999987
Q ss_pred cceeEEEeccc------CCCeEEEEEecCCCEEEEEeC--CCcEEEEECCCCceEEEEe-cccCccceeeeecCc----e
Q 001349 844 ILHLIQQIREH------TKAVTGLAILQSGEMLYSGSL--DKTARVWSIGNEEIHCVQV-HDIKDQIQNLAVSNS----I 910 (1094)
Q Consensus 844 ~~~~~~~l~~H------~~~V~sv~fspdg~~LaSgs~--DgtI~vWdi~~~~~~~~~~-~~~~~~V~~v~~~~~----~ 910 (1094)
+.+.++..+ ......++|+|||++|+++.. +++|.+||+.+++. +.. ...... ..+.+.+. .
T Consensus 92 --~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~--~~~~i~~~~~-~~v~~~p~~~~~~ 166 (361)
T 2oiz_A 92 --TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDY--VEDVTAAAGC-WSVIPQPNRPRSF 166 (361)
T ss_dssp --CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEE--EEEEGGGTTE-EEEEECTTSSSEE
T ss_pred --cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcE--EEEEecCCCc-ceeEEcCCCCeeE
Confidence 566666432 345678999999999998874 68999999999843 333 322211 11111111 2
Q ss_pred EEEeeCCCeEEEEEeC-CeEE-------EEcCCCCceEEE--EeCCEEEEEEcCCeEEEEECCCCceeEEe--ccce--e
Q 001349 911 LCFIPQGAGIKVHLRN-GKTK-------LLNSSKYPKCLA--LVQGKVYCGCQDGAIQEIDLATGTFATIQ--TGHR--K 976 (1094)
Q Consensus 911 ~~fspdg~~l~~~~~~-g~i~-------l~~~~~~v~~l~--~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~--~~~~--~ 976 (1094)
+.++++|+.+.+.... +.+. +|+.......+. ..+..++..+.++.|.+||+..+...... .... .
T Consensus 167 ~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~ 246 (361)
T 2oiz_A 167 MTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDED 246 (361)
T ss_dssp EEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHH
T ss_pred EEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccc
Confidence 3456666655544332 3332 222221111111 12346677778999999999765432111 0000 0
Q ss_pred ec-C-CCCCeEEEEEeCCccEEEEEEC-C---------CCEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcC
Q 001349 977 LL-G-KANPVHALQVHNGLVYTASTSL-D---------GAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKG 1042 (1094)
Q Consensus 977 ~~-~-h~~~V~sl~fs~~~~~las~s~-D---------g~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~d 1042 (1094)
.. + .......++|++++..+..+.. + +..|.+||+.+++.+.++..+. +.+++|+|| ++++++.
T Consensus 247 ~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~- 324 (361)
T 2oiz_A 247 KAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG- 324 (361)
T ss_dssp HHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS-
T ss_pred cccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC-
Confidence 00 0 0011123688988665554432 1 1389999999999999998666 999999998 7887776
Q ss_pred CeEEEEECCCC--cEEEEecccCCcceEEEEEcCCCC
Q 001349 1043 GTVEIWDQKRQ--IRIETLQTGTSGKVQCMALDDNEE 1077 (1094)
Q Consensus 1043 g~I~vwd~~t~--~~~~~l~~~h~~~I~~l~~Spdg~ 1077 (1094)
++|.|||..++ +.+.++ ..+......++++|||.
T Consensus 325 ~~v~v~D~~t~~l~~~~~i-~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 325 GNVNVYDISQPEPKLLRTI-EGAAEASLQVQFHPVGG 360 (361)
T ss_dssp SCEEEEECSSSSCEEEEEE-TTSCSSEEEEEECCCSC
T ss_pred CeEEEEECCCCcceeeEEe-ccCCCCcEEEEecCCCC
Confidence 99999999999 999887 35666789999999986
No 171
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.58 E-value=2.4e-15 Score=136.32 Aligned_cols=74 Identities=22% Similarity=0.460 Sum_probs=64.5
Q ss_pred CCCCCceeccCccccccCcEEcC-CcccccHHhHHHHHHhC-CCCCCCCCcCC-CCCCCCChhHHHHHHHHHHHHhCC
Q 001349 158 HTPPKDFVCPITTHIFDDPVTLE-TGQTYERRAIQEWIERG-NSSCPITRQKL-SSTKLPKTNYVLKRLIASWQEQNP 232 (1094)
Q Consensus 158 ~~~~~~~~CpIc~~~~~dPv~~~-cGhtfc~~ci~~~~~~~-~~~CP~c~~~~-~~~~~~~pN~~l~~~i~~~~~~~~ 232 (1094)
..+++++.||||+++|.+||+++ |||+||+.||..|+... ...||.||+.+ ....+. +|..|+++|+.|+..++
T Consensus 8 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~-~n~~l~~~i~~~~~~~~ 84 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALI-ANKFLRQAVNNFKNETG 84 (92)
T ss_dssp CCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCE-ECHHHHHHHHHHHHHHT
T ss_pred ccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccC-cCHHHHHHHHHHHHHHh
Confidence 35667999999999999999999 99999999999999753 35799999997 455675 99999999999998654
No 172
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.58 E-value=6.4e-13 Score=167.69 Aligned_cols=305 Identities=10% Similarity=0.007 Sum_probs=191.1
Q ss_pred cccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCc-----EEEEEEeCC--EEEEEECC---------CeEEEEe
Q 001349 778 YSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGK-----VLSIACFRD--KIFSGHSD---------GTIKVWT 839 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~-----V~~l~fspd--~LaSgs~D---------g~I~vWd 839 (1094)
...+.+|+.+++++ |++|++||.. .....+.+|... ...+.|||| +|+.++.+ +.+.+||
T Consensus 21 ~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d 98 (740)
T 4a5s_A 21 SLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD 98 (740)
T ss_dssp CEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred ccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEE
Confidence 45577788888886 9999999987 344555666532 344789998 78888776 5677999
Q ss_pred cCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCcccee-ee---------ecCc
Q 001349 840 GRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQN-LA---------VSNS 909 (1094)
Q Consensus 840 ~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~-v~---------~~~~ 909 (1094)
+.++ + ...+..|.+.+...+|||||+.||.++ |+.|++||..+++...+........+.. .. -...
T Consensus 99 ~~~~--~-~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~ 174 (740)
T 4a5s_A 99 LNKR--Q-LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYS 174 (740)
T ss_dssp TTTT--E-ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSB
T ss_pred CCCC--c-EEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCc
Confidence 9998 3 345677888999999999999999885 6899999999886443332222211110 00 0112
Q ss_pred eEEEeeCCCeEEEEEeCC------------------------------------eEEEEcCCC---C-------------
Q 001349 910 ILCFIPQGAGIKVHLRNG------------------------------------KTKLLNSSK---Y------------- 937 (1094)
Q Consensus 910 ~~~fspdg~~l~~~~~~g------------------------------------~i~l~~~~~---~------------- 937 (1094)
...|+|||+.|+....+. .+.+|+..+ .
T Consensus 175 ~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~ 254 (740)
T 4a5s_A 175 ALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPAS 254 (740)
T ss_dssp CEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHH
T ss_pred ceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCcc
Confidence 345999999998765331 355666544 2
Q ss_pred -------ceEEEEeC-CE-EEEEEc----CCeEEEEECCCCc----eeEEeccceee--cCCCCCeE-----EEEEeCCc
Q 001349 938 -------PKCLALVQ-GK-VYCGCQ----DGAIQEIDLATGT----FATIQTGHRKL--LGKANPVH-----ALQVHNGL 993 (1094)
Q Consensus 938 -------v~~l~~s~-~~-l~sgs~----Dg~I~iwDl~~~~----~~~~~~~~~~~--~~h~~~V~-----sl~fs~~~ 993 (1094)
+..++|++ ++ ++.... +..|.+||+.+++ +... ..+ .+|...|. ...|+||+
T Consensus 255 ~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~----~~l~~~~~~~~v~~~~~~~p~fspDG 330 (740)
T 4a5s_A 255 MLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVA----RQHIEMSTTGWVGRFRPSEPHFTLDG 330 (740)
T ss_dssp HHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGG----GCEEEECSSSCSSSSSCCCCEECTTS
T ss_pred CCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEE----EEeeeccCCceEccCcCCCceEcCCC
Confidence 34556664 55 333322 2369999999887 2211 111 33444443 67899999
Q ss_pred cEEE-EEECC-C-CEEEEEECCCCeEEEEecCCCCEEEEE-EeCCEE-EEEEc----CC--eEEEEECCCCcEEEEecc-
Q 001349 994 VYTA-STSLD-G-AAVKMWSTSNYNMVGSLPTLSEVRAMV-VSSELV-YLGCK----GG--TVEIWDQKRQIRIETLQT- 1061 (1094)
Q Consensus 994 ~~la-s~s~D-g-~~I~iwd~~~~~~~~~~~~~~~v~~l~-~spd~l-~sgs~----dg--~I~vwd~~t~~~~~~l~~- 1061 (1094)
..++ ..+.+ | ..|.+||..++.......+...+..+. ++.+.+ ++++. .+ .|+..++..+.....+..
T Consensus 331 ~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~ 410 (740)
T 4a5s_A 331 NSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCE 410 (740)
T ss_dssp SEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTT
T ss_pred CEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEEEEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccc
Confidence 8776 55533 2 378889988766554333555565544 554444 44443 23 455556555544334431
Q ss_pred --cCCcceEEEEEcCCCCEEEEEeCC---CcEEEEe
Q 001349 1062 --GTSGKVQCMALDDNEEFLVIGTSD---GRIQAWG 1092 (1094)
Q Consensus 1062 --~h~~~I~~l~~Spdg~~L~sgs~D---G~I~iWd 1092 (1094)
+....+....||||+++++..... ..+.+++
T Consensus 411 ~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~ 446 (740)
T 4a5s_A 411 LNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHS 446 (740)
T ss_dssp TSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEE
T ss_pred cCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEE
Confidence 123568899999999987654433 2455554
No 173
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.57 E-value=1.7e-12 Score=146.89 Aligned_cols=227 Identities=12% Similarity=0.079 Sum_probs=154.0
Q ss_pred CeEEEEecCCCcceeEEEec-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc--eEEEEecccCccceeeeecCc
Q 001349 833 GTIKVWTGRGSILHLIQQIR-EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE--IHCVQVHDIKDQIQNLAVSNS 909 (1094)
Q Consensus 833 g~I~vWd~~t~~~~~~~~l~-~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~--~~~~~~~~~~~~V~~v~~~~~ 909 (1094)
++|.+||..++ +.+..+. ++-.....++|+|+|+++++.+.++.|++||..... ...+........-.
T Consensus 69 ~~i~~~d~~~g--~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~------- 139 (329)
T 3fvz_A 69 DTILVIDPNNA--EILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQ------- 139 (329)
T ss_dssp CCEEEECTTTC--CEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCST-------
T ss_pred CcEEEEECCCC--eEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCc-------
Confidence 58999999988 4555543 455678999999999999998889999999987642 11111100000000
Q ss_pred eEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC--CEEEEEE--cCCeEEEEECCCCceeEEecccee----ecCCC
Q 001349 910 ILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ--GKVYCGC--QDGAIQEIDLATGTFATIQTGHRK----LLGKA 981 (1094)
Q Consensus 910 ~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~--~~l~sgs--~Dg~I~iwDl~~~~~~~~~~~~~~----~~~h~ 981 (1094)
..-..+..+++++ +.++++. .++.|++|| .++.....+..... ..++-
T Consensus 140 -----------------------~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~ 195 (329)
T 3fvz_A 140 -----------------------NHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQF 195 (329)
T ss_dssp -----------------------TCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEE
T ss_pred -----------------------cccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCccc
Confidence 0011233333432 2344443 478888888 45665543321100 01222
Q ss_pred CCeEEEEEeCC-ccEEEEEECCCCEEEEEECCCCeEEEEec---CCCCEEEEEEeCCEEEEEE--------cCCeEEEEE
Q 001349 982 NPVHALQVHNG-LVYTASTSLDGAAVKMWSTSNYNMVGSLP---TLSEVRAMVVSSELVYLGC--------KGGTVEIWD 1049 (1094)
Q Consensus 982 ~~V~sl~fs~~-~~~las~s~Dg~~I~iwd~~~~~~~~~~~---~~~~v~~l~~spd~l~sgs--------~dg~I~vwd 1049 (1094)
.....++++++ +.++++...+ +.|++||..+++.+..+. +...+..++++|..++... .++.|++||
T Consensus 196 ~~p~gia~d~~~g~l~v~d~~~-~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~ 274 (329)
T 3fvz_A 196 SVPHSLALVPHLDQLCVADREN-GRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMN 274 (329)
T ss_dssp SCEEEEEEETTTTEEEEEETTT-TEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEE
T ss_pred CCCcEEEEECCCCEEEEEECCC-CEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEE
Confidence 45889999998 6666666555 499999999899888885 4567889999997444432 245899999
Q ss_pred CCCCcEEEEec--ccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1050 QKRQIRIETLQ--TGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1050 ~~t~~~~~~l~--~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
..+++.+..+. .++...+.+++++|+|.++++...+++|++|++
T Consensus 275 ~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~ 320 (329)
T 3fvz_A 275 FSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTL 320 (329)
T ss_dssp TTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEE
T ss_pred cCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeC
Confidence 99999998873 256667999999999988888889999999986
No 174
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.55 E-value=8.3e-14 Score=175.82 Aligned_cols=238 Identities=12% Similarity=0.104 Sum_probs=158.4
Q ss_pred CcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCC-----eEEEEEecCCCEEEEEeCC---------C
Q 001349 814 GKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKA-----VTGLAILQSGEMLYSGSLD---------K 877 (1094)
Q Consensus 814 ~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~-----V~sv~fspdg~~LaSgs~D---------g 877 (1094)
....++.|+|| +++++ ||+|++||+.++ .+...+.+|... ...+.|||||++|+.++.+ +
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYG--NSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTC--CEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCC--ceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence 34568999997 66665 999999999999 566667777643 2447899999999999886 5
Q ss_pred cEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeE
Q 001349 878 TARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAI 957 (1094)
Q Consensus 878 tI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I 957 (1094)
.+.+||+.+++.. ....+...+.... |||||+.++ .+ .|+.|
T Consensus 93 ~~~~~d~~~~~~~--~l~~~~~~~~~~~-------~SPdG~~la----------------------------~~-~~~~i 134 (740)
T 4a5s_A 93 SYDIYDLNKRQLI--TEERIPNNTQWVT-------WSPVGHKLA----------------------------YV-WNNDI 134 (740)
T ss_dssp EEEEEETTTTEEC--CSSCCCTTEEEEE-------ECSSTTCEE----------------------------EE-ETTEE
T ss_pred EEEEEECCCCcEE--EcccCCCcceeeE-------ECCCCCEEE----------------------------EE-ECCeE
Confidence 5679999998533 2333445566665 999999743 33 35778
Q ss_pred EEEECCCCceeEEec-cc--eeecCCC---------CCeEEEEEeCCccEEEEEECCCC---------------------
Q 001349 958 QEIDLATGTFATIQT-GH--RKLLGKA---------NPVHALQVHNGLVYTASTSLDGA--------------------- 1004 (1094)
Q Consensus 958 ~iwDl~~~~~~~~~~-~~--~~~~~h~---------~~V~sl~fs~~~~~las~s~Dg~--------------------- 1004 (1094)
++||+.++....... +. ..+.++. .....+.|+||+..++..+.|+.
T Consensus 135 ~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~ 214 (740)
T 4a5s_A 135 YVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTV 214 (740)
T ss_dssp EEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEE
T ss_pred EEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcce
Confidence 888888776543211 10 0122222 12235889999998888764332
Q ss_pred --------------EEEEEECCC---C---eEEEEec------CCCCEEEEEEeCC--EEEEEEc----CCeEEEEECCC
Q 001349 1005 --------------AVKMWSTSN---Y---NMVGSLP------TLSEVRAMVVSSE--LVYLGCK----GGTVEIWDQKR 1052 (1094)
Q Consensus 1005 --------------~I~iwd~~~---~---~~~~~~~------~~~~v~~l~~spd--~l~sgs~----dg~I~vwd~~t 1052 (1094)
.|++||+.+ + +...... +...+..++|+|| .++.... +..|++||+.+
T Consensus 215 ~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t 294 (740)
T 4a5s_A 215 RVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE 294 (740)
T ss_dssp EEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET
T ss_pred eecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC
Confidence 588899988 7 3332221 4566889999999 3443322 34799999998
Q ss_pred Cc----EE---EEecccCCcceE-----EEEEcCCCCEEE-EEe-CCC--cEEEEeC
Q 001349 1053 QI----RI---ETLQTGTSGKVQ-----CMALDDNEEFLV-IGT-SDG--RIQAWGL 1093 (1094)
Q Consensus 1053 ~~----~~---~~l~~~h~~~I~-----~l~~Spdg~~L~-sgs-~DG--~I~iWdl 1093 (1094)
++ +. ..+..+|.+.|. ...|+|||+.|+ ..+ .+| .|++||+
T Consensus 295 g~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~ 351 (740)
T 4a5s_A 295 SSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQI 351 (740)
T ss_dssp TTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEET
T ss_pred CccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEEC
Confidence 87 21 111234655554 789999999877 665 344 5777765
No 175
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.55 E-value=1.2e-12 Score=150.38 Aligned_cols=241 Identities=11% Similarity=0.106 Sum_probs=154.3
Q ss_pred EEEEEECC--CeEEEEec--CCCcceeEEEec-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECC-CCceEEEEecccC
Q 001349 825 KIFSGHSD--GTIKVWTG--RGSILHLIQQIR-EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIG-NEEIHCVQVHDIK 898 (1094)
Q Consensus 825 ~LaSgs~D--g~I~vWd~--~t~~~~~~~~l~-~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~-~~~~~~~~~~~~~ 898 (1094)
.++.|++. +.|.+|++ .++....+.... ++...+..++|+|||++|++++.+ +|.+|++. +++..........
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 46667664 57888765 466433333322 244568899999999999999988 99999997 7754332222111
Q ss_pred ccceeeeecCceEEEeeCCCeEEEEEe-CCeEEEEcCCCCceEEEEeCCEEEEEE----cCCeEEEEECC-CCceeEEec
Q 001349 899 DQIQNLAVSNSILCFIPQGAGIKVHLR-NGKTKLLNSSKYPKCLALVQGKVYCGC----QDGAIQEIDLA-TGTFATIQT 972 (1094)
Q Consensus 899 ~~V~~v~~~~~~~~fspdg~~l~~~~~-~g~i~l~~~~~~v~~l~~s~~~l~sgs----~Dg~I~iwDl~-~~~~~~~~~ 972 (1094)
..+..+. |+|||+.+.+... .+.. ...+. .+|.+.+|++. +++......
T Consensus 83 g~~~~~~-------~spdg~~l~~~~~~~~~~------------------~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~ 137 (365)
T 1jof_A 83 GHPRAND-------ADTNTRAIFLLAAKQPPY------------------AVYANPFYKFAGYGNVFSVSETGKLEKNVQ 137 (365)
T ss_dssp SSGGGGC-------TTSCCEEEEEEECSSTTC------------------CEEEEEESSSCCEEEEEEECTTCCEEEEEE
T ss_pred CCCccEE-------ECCCCCEEEEEEecCCcc------------------eeccceeecCCceEEEEccCCCCcCcceEe
Confidence 2233344 8888885321111 1100 00111 68899999997 455432211
Q ss_pred cceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECC-CCeEE--EEec---CCCCEEEEEEeCC--EEEEEEc-CC
Q 001349 973 GHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTS-NYNMV--GSLP---TLSEVRAMVVSSE--LVYLGCK-GG 1043 (1094)
Q Consensus 973 ~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~-~~~~~--~~~~---~~~~v~~l~~spd--~l~sgs~-dg 1043 (1094)
. ....+...+.+++|+|++.+++++...+..|++||+. +++.. ..+. +...+..++|+|| ++++++. ++
T Consensus 138 ~--~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~ 215 (365)
T 1jof_A 138 N--YEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGN 215 (365)
T ss_dssp E--EECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTT
T ss_pred e--EEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCC
Confidence 0 0012456799999999998887776544599999998 67643 3343 3567999999998 6777664 78
Q ss_pred eEEEEECC--CCcEE---EEec---c---cCCc------ceEEEE-EcCCCCEEEEEeCCC------cEEEEeC
Q 001349 1044 TVEIWDQK--RQIRI---ETLQ---T---GTSG------KVQCMA-LDDNEEFLVIGTSDG------RIQAWGL 1093 (1094)
Q Consensus 1044 ~I~vwd~~--t~~~~---~~l~---~---~h~~------~I~~l~-~Spdg~~L~sgs~DG------~I~iWdl 1093 (1094)
.|.+|++. +++.. ..+. . +|.. .+..++ |+|||++|++++.++ +|.+|++
T Consensus 216 ~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~ 289 (365)
T 1jof_A 216 RICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKL 289 (365)
T ss_dssp EEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEE
T ss_pred eEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEE
Confidence 99999765 56542 2221 1 1222 588999 999999988776432 8999987
No 176
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.53 E-value=3.9e-12 Score=143.56 Aligned_cols=267 Identities=10% Similarity=0.010 Sum_probs=172.1
Q ss_pred cccccccCcEEEEeeCCCCeEEEeCCcceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccC
Q 001349 778 YSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHT 855 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~ 855 (1094)
...+.+++..++..+.++.++.|. ......+..+...+.+++|+++ +++++..++.|.+||..++. .......+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~--~~~~~~~~~ 86 (333)
T 2dg1_A 10 TLFYSGKSNSAVPIISESELQTIT-AEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE--IKRPFVSHK 86 (333)
T ss_dssp BCCSCGGGGCSSCCCCGGGSCEEE-CEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC--EEEEEECSS
T ss_pred eeeecCCccceeEEeecccCcccc-cceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCc--EEEEeeCCC
Confidence 344555566666667888999993 3444555667778899999986 66678889999999999883 333333567
Q ss_pred CCeEEEEEecCCCEEEEEeCC----CcEEEEECCCCceEEEEe-cccCccceeeeecCceEEEeeCCCeEEEEEeCCeEE
Q 001349 856 KAVTGLAILQSGEMLYSGSLD----KTARVWSIGNEEIHCVQV-HDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTK 930 (1094)
Q Consensus 856 ~~V~sv~fspdg~~LaSgs~D----gtI~vWdi~~~~~~~~~~-~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~ 930 (1094)
..+.+++|+++|+++++...+ +.|.+||..++....... ......+..+. ++|+|+.++....+..
T Consensus 87 ~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~-------~d~~g~l~v~~~~~~~-- 157 (333)
T 2dg1_A 87 ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMV-------FDSKGGFYFTDFRGYS-- 157 (333)
T ss_dssp SSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEE-------ECTTSCEEEEECCCBT--
T ss_pred CCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceE-------ECCCCCEEEEeccccc--
Confidence 889999999999988887776 689999998876442221 11122334443 6777653221110000
Q ss_pred EEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEE-EEECCCCEEEEE
Q 001349 931 LLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTA-STSLDGAAVKMW 1009 (1094)
Q Consensus 931 l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~la-s~s~Dg~~I~iw 1009 (1094)
....+.|..||..+++..... .+...+..++|++++.++. +.+.+ +.|.+|
T Consensus 158 --------------------~~~~~~l~~~~~~~~~~~~~~-------~~~~~~~~i~~~~dg~~l~v~~~~~-~~i~~~ 209 (333)
T 2dg1_A 158 --------------------TNPLGGVYYVSPDFRTVTPII-------QNISVANGIALSTDEKVLWVTETTA-NRLHRI 209 (333)
T ss_dssp --------------------TBCCEEEEEECTTSCCEEEEE-------EEESSEEEEEECTTSSEEEEEEGGG-TEEEEE
T ss_pred --------------------cCCCceEEEEeCCCCEEEEee-------cCCCcccceEECCCCCEEEEEeCCC-CeEEEE
Confidence 001345666776655543221 1123578899999987544 43344 489999
Q ss_pred ECCC-CeEEEE--------ecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCC------cceEEEEE
Q 001349 1010 STSN-YNMVGS--------LPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTS------GKVQCMAL 1072 (1094)
Q Consensus 1010 d~~~-~~~~~~--------~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~------~~I~~l~~ 1072 (1094)
|..+ +..... +.....+..++++++ +.++...++.|.+||. +++.+..+. .+. ..+.+++|
T Consensus 210 d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~-~~~~~~g~~~~~~~~~~ 287 (333)
T 2dg1_A 210 ALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQIL-IPGRDEGHMLRSTHPQF 287 (333)
T ss_dssp EECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEE-CTTGGGTCSCBCCEEEE
T ss_pred EecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEE-cCCCccccccCcceEEE
Confidence 9963 332211 112246788999987 4444456789999998 566666663 222 26899999
Q ss_pred cCCCCEEEEEeCCC
Q 001349 1073 DDNEEFLVIGTSDG 1086 (1094)
Q Consensus 1073 Spdg~~L~sgs~DG 1086 (1094)
+||++.|+.++.+|
T Consensus 288 ~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 288 IPGTNQLIICSNDI 301 (333)
T ss_dssp CTTSCEEEEEEECG
T ss_pred CCCCCEEEEEeCcc
Confidence 99988777666653
No 177
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.53 E-value=7.1e-12 Score=138.18 Aligned_cols=236 Identities=11% Similarity=0.118 Sum_probs=159.8
Q ss_pred ccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEec------ccCCCeEEEEEe-cCCCEEEEEeC-CCcE
Q 001349 810 SSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIR------EHTKAVTGLAIL-QSGEMLYSGSL-DKTA 879 (1094)
Q Consensus 810 ~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~------~H~~~V~sv~fs-pdg~~LaSgs~-DgtI 879 (1094)
.+|-..+.+++++++ ++++...++.|.+||..+. .+..+. +|...+..++++ +++.++++... ++.|
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~---~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i 102 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGR---FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQI 102 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSC---EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCCCc---EEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEE
Confidence 356678999999986 6777788999999998743 445443 345678999995 67777666643 8899
Q ss_pred EEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEE
Q 001349 880 RVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQE 959 (1094)
Q Consensus 880 ~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~i 959 (1094)
++||.. ++............+..++ ++++|+. +++...++.|.+
T Consensus 103 ~~~d~~-g~~~~~~~~~~~~~~~~i~-------~~~~g~l----------------------------~v~~~~~~~i~~ 146 (286)
T 1q7f_A 103 QIYNQY-GQFVRKFGATILQHPRGVT-------VDNKGRI----------------------------IVVECKVMRVII 146 (286)
T ss_dssp EEECTT-SCEEEEECTTTCSCEEEEE-------ECTTSCE----------------------------EEEETTTTEEEE
T ss_pred EEECCC-CcEEEEecCccCCCceEEE-------EeCCCCE----------------------------EEEECCCCEEEE
Confidence 999944 4322111111112233333 6666652 334445778999
Q ss_pred EECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCC---CCEEEEEEeCC--
Q 001349 960 IDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTL---SEVRAMVVSSE-- 1034 (1094)
Q Consensus 960 wDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~---~~v~~l~~spd-- 1034 (1094)
||.. +.....+. ..++...+..+++++++.+.++...++ .|++||. ++..+..+... ..+..++++++
T Consensus 147 ~~~~-g~~~~~~~----~~~~~~~p~~i~~~~~g~l~v~~~~~~-~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~ 219 (286)
T 1q7f_A 147 FDQN-GNVLHKFG----CSKHLEFPNGVVVNDKQEIFISDNRAH-CVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGE 219 (286)
T ss_dssp ECTT-SCEEEEEE----CTTTCSSEEEEEECSSSEEEEEEGGGT-EEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCC
T ss_pred EcCC-CCEEEEeC----CCCccCCcEEEEECCCCCEEEEECCCC-EEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCC
Confidence 9864 44443221 113445689999999988777766664 9999997 45666666532 57899999988
Q ss_pred EEEEEEcCC-eEEEEECCCCcEEEEeccc-CCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1035 LVYLGCKGG-TVEIWDQKRQIRIETLQTG-TSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1035 ~l~sgs~dg-~I~vwd~~t~~~~~~l~~~-h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
++++...++ .|.+||. +++.+..+..+ ....+.+++|+|+|+++++ +.|++|++|++
T Consensus 220 l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~ 278 (286)
T 1q7f_A 220 ILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRY 278 (286)
T ss_dssp EEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEEC
T ss_pred EEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEc
Confidence 455555565 9999995 56666666322 1224789999999987776 67999999986
No 178
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.49 E-value=1.1e-14 Score=139.63 Aligned_cols=67 Identities=16% Similarity=0.257 Sum_probs=60.8
Q ss_pred CceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCC-CCCCChhHHHHHHHHHHHH
Q 001349 162 KDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSS-TKLPKTNYVLKRLIASWQE 229 (1094)
Q Consensus 162 ~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~-~~~~~pN~~l~~~i~~~~~ 229 (1094)
+++.||||+++|.+||+++|||+||+.||..|+..+...||.||+.+.. ..+. +|..|++++++|..
T Consensus 51 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~-~n~~l~~~i~~~~p 118 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQ-VNQPLQTVLNQLFP 118 (124)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCC-CCHHHHHHHHHHST
T ss_pred cCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCC-CCHHHHHHHHHHcc
Confidence 3899999999999999999999999999999998656689999999987 5665 99999999998864
No 179
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.49 E-value=5.8e-12 Score=144.61 Aligned_cols=251 Identities=12% Similarity=0.201 Sum_probs=164.6
Q ss_pred CCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEe----------CCCcEEEEECCCCceE-EEEecccCc
Q 001349 831 SDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGS----------LDKTARVWSIGNEEIH-CVQVHDIKD 899 (1094)
Q Consensus 831 ~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs----------~DgtI~vWdi~~~~~~-~~~~~~~~~ 899 (1094)
.|++|.+||..++ +.+.++..+..+ .++|+|||+++++++ .+++|.+||..+++.. .+......
T Consensus 29 ~d~~v~v~D~~t~--~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~- 103 (361)
T 2oiz_A 29 TESRVHVYDYTNG--KFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR- 103 (361)
T ss_dssp GGCEEEEEETTTC--CEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB-
T ss_pred ccCeEEEEECCCC--eEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc-
Confidence 4789999999998 567777766555 899999999999986 3678999999887532 22221100
Q ss_pred cceeeeecCceEEEeeCCCeEEEEEe--CCeEEEEcCCCCc--eE---------EEEeC---CEEEEEEcCCeEEEEECC
Q 001349 900 QIQNLAVSNSILCFIPQGAGIKVHLR--NGKTKLLNSSKYP--KC---------LALVQ---GKVYCGCQDGAIQEIDLA 963 (1094)
Q Consensus 900 ~V~~v~~~~~~~~fspdg~~l~~~~~--~g~i~l~~~~~~v--~~---------l~~s~---~~l~sgs~Dg~I~iwDl~ 963 (1094)
. .....+..+.|+|||+++.+.+. ++.+.+|+....- .. +.+.+ ..+++.+.||.+.+|+..
T Consensus 104 -~-~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~ 181 (361)
T 2oiz_A 104 -V-QGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLG 181 (361)
T ss_dssp -C-CBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEEC
T ss_pred -c-ccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEEC
Confidence 0 00012334459999999998876 4789999875431 11 22222 357889999999999986
Q ss_pred C-CceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCe--EEEEecC-----------CCCEEEE
Q 001349 964 T-GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN--MVGSLPT-----------LSEVRAM 1029 (1094)
Q Consensus 964 ~-~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~--~~~~~~~-----------~~~v~~l 1029 (1094)
. ++..........+..+..++ .+.+++++..++..+.++ .|.+||+.... ....+.. ......+
T Consensus 182 ~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~-~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~ 259 (361)
T 2oiz_A 182 EDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYG-NVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLV 259 (361)
T ss_dssp TTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTS-EEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCE
T ss_pred CCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCC-eEEEEEecCCCceecccccccCccccccccccCCeeEE
Confidence 5 55431111001122222222 223345555555556665 89999987543 2222210 0111126
Q ss_pred EEeCC--EEEEEEc-----------CCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1030 VVSSE--LVYLGCK-----------GGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1030 ~~spd--~l~sgs~-----------dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
+++++ .++++.. .+.|.+||..+++.+.++. .+. +.+++|+|||++|++++. ++|.+||..
T Consensus 260 a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~-~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~ 333 (361)
T 2oiz_A 260 GLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIP-GRD--ALSMTIDQQRNLMLTLDG-GNVNVYDIS 333 (361)
T ss_dssp EEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEE-CTT--CCEEEEETTTTEEEEECS-SCEEEEECS
T ss_pred EEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEe-cCC--eeEEEECCCCCEEEEeCC-CeEEEEECC
Confidence 88887 5555543 3589999999999999995 444 999999999999998887 999999963
No 180
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.47 E-value=1.3e-12 Score=150.69 Aligned_cols=272 Identities=7% Similarity=-0.072 Sum_probs=167.0
Q ss_pred ccccccccCcEEEEeeCC---CCeEEEeCCcc-eeecccCCCcE-EEEEEeCC--EEEEEECCCeEEEEecCCCcceeEE
Q 001349 777 KYSPLAFEMVKVLSNGHD---SSADFWNHREL-VHVDSSENGKV-LSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQ 849 (1094)
Q Consensus 777 ~~~~~~~d~~~l~s~s~d---g~I~vWd~~~~-~~~~~~h~~~V-~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~ 849 (1094)
....+++||++++..... ..|.+|+.... ...+..+...+ ..+.|+|| .|+.++.++.|++||+.++. ...
T Consensus 39 ~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~--~~~ 116 (396)
T 3c5m_A 39 YQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLE--EQV 116 (396)
T ss_dssp TSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCC--EEE
T ss_pred ecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCC--cEE
Confidence 345688899998776543 35677787632 22233333333 34789997 89899999999999999884 333
Q ss_pred EecccCCCeEE-------------------EEEecCCCEEEEE-----eCCCcEEEEECCCCceEEEEecccCccceeee
Q 001349 850 QIREHTKAVTG-------------------LAILQSGEMLYSG-----SLDKTARVWSIGNEEIHCVQVHDIKDQIQNLA 905 (1094)
Q Consensus 850 ~l~~H~~~V~s-------------------v~fspdg~~LaSg-----s~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~ 905 (1094)
....+...... +.|+|+++.++.+ ..+..|.+||+.+++...+. .....+..+.
T Consensus 117 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~--~~~~~~~~~~ 194 (396)
T 3c5m_A 117 IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH--QDTAWLGHPI 194 (396)
T ss_dssp EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE--EESSCEEEEE
T ss_pred EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec--cCCcccccce
Confidence 33334443222 3456777766544 35668999999887644433 2233444444
Q ss_pred ecCceEEEee-CCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCC--CC
Q 001349 906 VSNSILCFIP-QGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGK--AN 982 (1094)
Q Consensus 906 ~~~~~~~fsp-dg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h--~~ 982 (1094)
|+| +|+.++....++. ......|.+||+.++.... +..+ ..
T Consensus 195 -------~sp~dg~~l~~~~~~~~----------------------~~~~~~l~~~d~~~~~~~~-------l~~~~~~~ 238 (396)
T 3c5m_A 195 -------YRPFDDSTVGFCHEGPH----------------------DLVDARMWLVNEDGSNVRK-------IKEHAEGE 238 (396)
T ss_dssp -------EETTEEEEEEEEECSCS----------------------SSCSCCCEEEETTSCCCEE-------SSCCCTTE
T ss_pred -------ECCCCCCEEEEEecCCC----------------------CCCCceEEEEECCCCceeE-------eeccCCCc
Confidence 777 5654432211000 0001468888987665331 1122 23
Q ss_pred CeEEEEEeCCccEEEEEECCC----CEEEEEECCCCeEEEEecCCCCEEEEEEeC-C--EEEEEE---------------
Q 001349 983 PVHALQVHNGLVYTASTSLDG----AAVKMWSTSNYNMVGSLPTLSEVRAMVVSS-E--LVYLGC--------------- 1040 (1094)
Q Consensus 983 ~V~sl~fs~~~~~las~s~Dg----~~I~iwd~~~~~~~~~~~~~~~v~~l~~sp-d--~l~sgs--------------- 1040 (1094)
.+..+.|+|++.+++..+.++ +.|.+||+.+++......... .. +.|+| | ++++++
T Consensus 239 ~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~ 316 (396)
T 3c5m_A 239 SCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNI 316 (396)
T ss_dssp EEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEECCC----------CC
T ss_pred cccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEecCCcceeecccccccc
Confidence 577899999998766654431 259999998886544332222 33 88998 7 555543
Q ss_pred -cCCeEEEEECCCCcEEEEecccCCc-----------ceEEEEEcCCCCEEEEEeC-CCcEEEEe
Q 001349 1041 -KGGTVEIWDQKRQIRIETLQTGTSG-----------KVQCMALDDNEEFLVIGTS-DGRIQAWG 1092 (1094)
Q Consensus 1041 -~dg~I~vwd~~t~~~~~~l~~~h~~-----------~I~~l~~Spdg~~L~sgs~-DG~I~iWd 1092 (1094)
.++.|++||+.+++.. .+. .+.. .+..++|+|||+.|+.++. +|...+|.
T Consensus 317 ~~~~~i~~~d~~~~~~~-~l~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~ 379 (396)
T 3c5m_A 317 ENDPFLYVLNTKAKSAQ-KLC-KHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYI 379 (396)
T ss_dssp CCCCEEEEEETTTTBCC-EEE-ECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEE
T ss_pred CCCCcEEEEecccCceE-Ecc-CCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEE
Confidence 3478999999888753 332 3333 2567899999998877664 56666664
No 181
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.47 E-value=2.4e-11 Score=152.51 Aligned_cols=275 Identities=14% Similarity=0.071 Sum_probs=174.0
Q ss_pred cccccccCcEEEEeeCCC-C--eEEEeCC----cce------eecccCCCcEEEEEEeCC--EEEEEECC-C----eEEE
Q 001349 778 YSPLAFEMVKVLSNGHDS-S--ADFWNHR----ELV------HVDSSENGKVLSIACFRD--KIFSGHSD-G----TIKV 837 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg-~--I~vWd~~----~~~------~~~~~h~~~V~~l~fspd--~LaSgs~D-g----~I~v 837 (1094)
.....++|.+++....++ . -.+|-.. ... ....+|+..+..++|||| +|+.++.+ | +|++
T Consensus 76 ~~~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v 155 (710)
T 2xdw_A 76 YSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKF 155 (710)
T ss_dssp ECCCEEETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEE
T ss_pred CCCCEEECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEE
Confidence 333458899877654432 1 2455442 111 112235557899999997 66655443 3 8999
Q ss_pred EecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCc----------------EEEEECCCCceE--EEEe-cccC
Q 001349 838 WTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKT----------------ARVWSIGNEEIH--CVQV-HDIK 898 (1094)
Q Consensus 838 Wd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~Dgt----------------I~vWdi~~~~~~--~~~~-~~~~ 898 (1094)
||+.++ ..+.....+. .+..++|+|||+.|+.++.|+. |++|++.+++.. .+.. ..+.
T Consensus 156 ~d~~tg--~~~~~~~~~~-~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~ 232 (710)
T 2xdw_A 156 MKVDGA--KELPDVLERV-KFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEP 232 (710)
T ss_dssp EETTTT--EEEEEEEEEE-CSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCT
T ss_pred EECCCC--CCCcccccCc-ccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCC
Confidence 999998 4443222222 3678999999999999998876 999999887522 2211 1123
Q ss_pred ccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCC------Cc-eeEEe
Q 001349 899 DQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLAT------GT-FATIQ 971 (1094)
Q Consensus 899 ~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~------~~-~~~~~ 971 (1094)
..+..+. |+|||+.+++....+. ..+..|.+||+.+ +. ..
T Consensus 233 ~~~~~~~-------~SpDg~~l~~~~~~~~-----------------------~~~~~l~~~d~~~~~~~~~~~~~~--- 279 (710)
T 2xdw_A 233 KWMGGAE-------LSDDGRYVLLSIREGC-----------------------DPVNRLWYCDLQQESNGITGILKW--- 279 (710)
T ss_dssp TCEEEEE-------ECTTSCEEEEEEECSS-----------------------SSCCEEEEEEGGGSSSSSCSSCCC---
T ss_pred eEEEEEE-------EcCCCCEEEEEEEccC-----------------------CCccEEEEEECcccccccCCccce---
Confidence 3344444 8999997654432210 0156889999876 42 12
Q ss_pred ccceeecCCCCCeEEEEEeCCccEEEEEECCC---CEEEEEECCCCeE---EEEecCCC--CEEEEEEeCC--EEEEEEc
Q 001349 972 TGHRKLLGKANPVHALQVHNGLVYTASTSLDG---AAVKMWSTSNYNM---VGSLPTLS--EVRAMVVSSE--LVYLGCK 1041 (1094)
Q Consensus 972 ~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg---~~I~iwd~~~~~~---~~~~~~~~--~v~~l~~spd--~l~sgs~ 1041 (1094)
..+..+...+.. .|++++..++..+..+ ..|.+||+.++.. ...+.+.. .+..+.|+++ +++++..
T Consensus 280 ---~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~ 355 (710)
T 2xdw_A 280 ---VKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLH 355 (710)
T ss_dssp ---EEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEE
T ss_pred ---EEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEE
Confidence 233444445554 3666666555554432 3799999987642 22233433 6888999844 6677777
Q ss_pred CC--eEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEE-e---CCCcEEEEeC
Q 001349 1042 GG--TVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIG-T---SDGRIQAWGL 1093 (1094)
Q Consensus 1042 dg--~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sg-s---~DG~I~iWdl 1093 (1094)
++ .|++||+.+|+.+..+. .+.+.|..+.++|+++.++.. + ..++|+.||+
T Consensus 356 ~g~~~l~~~~~~~g~~~~~l~-~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~ 412 (710)
T 2xdw_A 356 DVKNTLQLHDLATGALLKIFP-LEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDL 412 (710)
T ss_dssp TTEEEEEEEETTTCCEEEEEC-CCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEET
T ss_pred CCEEEEEEEECCCCCEEEecC-CCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence 87 46677887888777774 567789999999999766533 2 2478999986
No 182
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.46 E-value=3.9e-12 Score=158.08 Aligned_cols=278 Identities=9% Similarity=0.027 Sum_probs=173.9
Q ss_pred hccccccccccCcEEEEe--eCCCCeEEEeCC--cceeecccCCCcEE---------EEEEe--CC--E-EEEEEC-CCe
Q 001349 774 ELRKYSPLAFEMVKVLSN--GHDSSADFWNHR--ELVHVDSSENGKVL---------SIACF--RD--K-IFSGHS-DGT 834 (1094)
Q Consensus 774 ~~~~~~~~~~d~~~l~s~--s~dg~I~vWd~~--~~~~~~~~h~~~V~---------~l~fs--pd--~-LaSgs~-Dg~ 834 (1094)
.......++.+..++++. +.++...||... .....+..|...+. ...|+ || . |+.++. ++.
T Consensus 24 ~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~ 103 (662)
T 3azo_A 24 GRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQR 103 (662)
T ss_dssp SCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCC
T ss_pred CccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCe
Confidence 333333344444455555 457889999853 33445566666666 66676 65 6 665544 567
Q ss_pred EEEEecC--C-CcceeEEEecc-----cCCCeEEEEEecCCCEEEEEeCC----------CcEEEEECCC------CceE
Q 001349 835 IKVWTGR--G-SILHLIQQIRE-----HTKAVTGLAILQSGEMLYSGSLD----------KTARVWSIGN------EEIH 890 (1094)
Q Consensus 835 I~vWd~~--t-~~~~~~~~l~~-----H~~~V~sv~fspdg~~LaSgs~D----------gtI~vWdi~~------~~~~ 890 (1094)
|.+|++. + +. ...+.. |...+.+++|+|||+.|++++.| .+|++||+.+ ++..
T Consensus 104 l~~~~~~~~g~~~---~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 180 (662)
T 3azo_A 104 LYAFEPDAPGGAV---PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR 180 (662)
T ss_dssp EEEECTTSTTCCC---CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE
T ss_pred EEEEcCCCCCCCC---CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee
Confidence 8888876 3 52 334444 67789999999999999999887 5899999988 6543
Q ss_pred EEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECC-CC---c
Q 001349 891 CVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLA-TG---T 966 (1094)
Q Consensus 891 ~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~-~~---~ 966 (1094)
.+. ......+..+. |+|||+.++...+++....| ....|.+||+. ++ .
T Consensus 181 ~l~-~~~~~~~~~~~-------~SpDG~~la~~~~~~~~~~~--------------------~~~~i~~~d~~~~g~~~~ 232 (662)
T 3azo_A 181 ELS-DDAHRFVTGPR-------LSPDGRQAVWLAWDHPRMPW--------------------EGTELKTARVTEDGRFAD 232 (662)
T ss_dssp ESS-CSCSSEECCCE-------ECTTSSEEEEEEECTTCCTT--------------------TCEEEEEEEECTTSCEEE
T ss_pred EEE-ecCCCcccCce-------ECCCCCEEEEEECCCCCCCC--------------------CCcEEEEEEECCCCcccc
Confidence 222 02233444444 99999986654433210000 12468999998 56 2
Q ss_pred eeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCC-EEEEEECCCCeEEEEecCCCC---------EEEEEEeCC--
Q 001349 967 FATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGA-AVKMWSTSNYNMVGSLPTLSE---------VRAMVVSSE-- 1034 (1094)
Q Consensus 967 ~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~-~I~iwd~~~~~~~~~~~~~~~---------v~~l~~spd-- 1034 (1094)
.. ....+|...+..+.|+||+.+++++..++. .|.+||..+++......+... +..++|+++
T Consensus 233 ~~------~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~ 306 (662)
T 3azo_A 233 TR------TLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGL 306 (662)
T ss_dssp EE------EEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSC
T ss_pred cE------EeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCE
Confidence 22 122345678999999999987777665531 567777767765544333221 457888876
Q ss_pred EEEEEEcCCeEEEE--ECCCCcEEEEecccCCcceEEE-EEcCCCCEEEEEeCCCcEEEE
Q 001349 1035 LVYLGCKGGTVEIW--DQKRQIRIETLQTGTSGKVQCM-ALDDNEEFLVIGTSDGRIQAW 1091 (1094)
Q Consensus 1035 ~l~sgs~dg~I~vw--d~~t~~~~~~l~~~h~~~I~~l-~~Spdg~~L~sgs~DG~I~iW 1091 (1094)
++++++. +.++|| |..+++ +..+ ..|.+.+..+ +++.+.-++++++.+....+|
T Consensus 307 ~~~~~~~-~~~~l~~~d~~~~~-~~~l-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~ 363 (662)
T 3azo_A 307 IAVVHGK-GAAVLGILDPESGE-LVDA-AGPWTEWAATLTVSGTRAVGVAASPRTAYEVV 363 (662)
T ss_dssp EEEEEBS-SSCEEEEEETTTTE-EEEC-CSSCCEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred EEEEEEc-CccEEEEEECCCCc-EEEe-cCCCCeEEEEEecCCCEEEEEEcCCCCCCEEE
Confidence 7777888 999999 665565 5666 4677777777 554333344455555544444
No 183
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.45 E-value=1.6e-12 Score=161.53 Aligned_cols=250 Identities=10% Similarity=-0.007 Sum_probs=167.4
Q ss_pred eecccCCCcEEEEEEeCC--EEEEE--ECCCeEEEEecCCCcceeEEEecccCCCeE---------EEEEe--cCCCE-E
Q 001349 807 HVDSSENGKVLSIACFRD--KIFSG--HSDGTIKVWTGRGSILHLIQQIREHTKAVT---------GLAIL--QSGEM-L 870 (1094)
Q Consensus 807 ~~~~~h~~~V~~l~fspd--~LaSg--s~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~---------sv~fs--pdg~~-L 870 (1094)
..+.+|...|..++|+++ +++++ +.++...||....+ .....+..|...+. ...|+ |||+. |
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~l 94 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRAD--GAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLL 94 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTT--SCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEE
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCC--CCcceeCCCCccccccccccCCccceeeeecCCCeEE
Confidence 456679999999999998 44455 45889999996444 34566777776666 66676 99998 7
Q ss_pred EEEeC-CCcEEEEECC--C-CceEEEEecc---cCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEE
Q 001349 871 YSGSL-DKTARVWSIG--N-EEIHCVQVHD---IKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLAL 943 (1094)
Q Consensus 871 aSgs~-DgtI~vWdi~--~-~~~~~~~~~~---~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~ 943 (1094)
+.++. +..|.+|++. + +....+.... +...+..+. |+|||+.++....+..- .
T Consensus 95 a~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~-------~spDg~~l~~~~~~~~~-----~-------- 154 (662)
T 3azo_A 95 VFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPV-------LLPERGEVWCMAEEFTG-----E-------- 154 (662)
T ss_dssp EEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEE-------EETTTTEEEEEEEEECS-----S--------
T ss_pred EEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcE-------ECCCCCEEEEEEecccC-----C--------
Confidence 76654 5667777776 3 4433322211 233444444 99999976544332100 0
Q ss_pred eCCEEEEEEcCCeEEEEECCC------CceeEEeccceeec-CCCCCeEEEEEeCCccEEEEEECCC-------CEEEEE
Q 001349 944 VQGKVYCGCQDGAIQEIDLAT------GTFATIQTGHRKLL-GKANPVHALQVHNGLVYTASTSLDG-------AAVKMW 1009 (1094)
Q Consensus 944 s~~~l~sgs~Dg~I~iwDl~~------~~~~~~~~~~~~~~-~h~~~V~sl~fs~~~~~las~s~Dg-------~~I~iw 1009 (1094)
.+ ......|.+||+.+ +... .+. .+...+..+.|+||+.+++..+.++ ..|.+|
T Consensus 155 ~~-----~~~~~~i~~~~~~~~~~~~~~~~~-------~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~ 222 (662)
T 3azo_A 155 GP-----SDVRRFLAAVPLDGSAAADRSAVR-------ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTA 222 (662)
T ss_dssp ST-----TCEEEEEEEEETTSTTTTCGGGSE-------ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEE
T ss_pred CC-----CCceeEEEEEECCCCccccCCcee-------EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEE
Confidence 00 00115789999987 5542 233 4445778899999999998777543 489999
Q ss_pred ECC-CC---eEEEEec-CCCCEEEEEEeCC--EEEEEEcCC--eEEEEECCCCcEEEEecccCCcc--------eEEEEE
Q 001349 1010 STS-NY---NMVGSLP-TLSEVRAMVVSSE--LVYLGCKGG--TVEIWDQKRQIRIETLQTGTSGK--------VQCMAL 1072 (1094)
Q Consensus 1010 d~~-~~---~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg--~I~vwd~~t~~~~~~l~~~h~~~--------I~~l~~ 1072 (1094)
|+. ++ ....... +...+..+.|+|| ++++++.++ .|++||..+++..... .++... +..++|
T Consensus 223 d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~-~~~~~~~~p~w~~~~~~~~~ 301 (662)
T 3azo_A 223 RVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLC-RREEEFAGPLWTPGMRWFAP 301 (662)
T ss_dssp EECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESS-CCSSBSSCCCCSTTCCSEEE
T ss_pred EECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecc-cccccccCccccccCceEeE
Confidence 998 56 4433333 3678999999998 677777777 6777777677654433 333322 567899
Q ss_pred cCCCCEEEEEeCCCcEEEEe
Q 001349 1073 DDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1073 Spdg~~L~sgs~DG~I~iWd 1092 (1094)
+|+++++++++. |+++||.
T Consensus 302 ~~~~~~~~~~~~-~~~~l~~ 320 (662)
T 3azo_A 302 LANGLIAVVHGK-GAAVLGI 320 (662)
T ss_dssp CTTSCEEEEEBS-SSCEEEE
T ss_pred eCCCEEEEEEEc-CccEEEE
Confidence 999999999998 9999994
No 184
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.45 E-value=6.9e-12 Score=157.02 Aligned_cols=277 Identities=10% Similarity=0.002 Sum_probs=175.1
Q ss_pred hccccccccccCcEEEEeeCCC---CeEEEeCC----cceeec------ccCCCcEEEEEEeCC--EEE-----EEECCC
Q 001349 774 ELRKYSPLAFEMVKVLSNGHDS---SADFWNHR----ELVHVD------SSENGKVLSIACFRD--KIF-----SGHSDG 833 (1094)
Q Consensus 774 ~~~~~~~~~~d~~~l~s~s~dg---~I~vWd~~----~~~~~~------~~h~~~V~~l~fspd--~La-----Sgs~Dg 833 (1094)
.........++|.+++....++ .-.+|-.. .....+ .+|+..+.+++|||| +|+ +|+.+.
T Consensus 68 ~~~~~~~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~ 147 (695)
T 2bkl_A 68 YTDSVSTPSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEA 147 (695)
T ss_dssp SCCEECCCEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCC
T ss_pred ccccCCCCEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceE
Confidence 3344555568999888776654 35566543 111121 246667999999998 555 334457
Q ss_pred eEEEEecCCCcceeEEEecccCCCe--EEEEEecCCCEEEEEeCCCc-------------EEEEECCCCce--EEEEe-c
Q 001349 834 TIKVWTGRGSILHLIQQIREHTKAV--TGLAILQSGEMLYSGSLDKT-------------ARVWSIGNEEI--HCVQV-H 895 (1094)
Q Consensus 834 ~I~vWd~~t~~~~~~~~l~~H~~~V--~sv~fspdg~~LaSgs~Dgt-------------I~vWdi~~~~~--~~~~~-~ 895 (1094)
+|++||+.++. .+. ..+...+ ..++|+|||+.|+.++.|.+ |++|++.++.. ..+.. .
T Consensus 148 ~i~v~dl~tg~--~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~ 223 (695)
T 2bkl_A 148 VLHVIDVDSGE--WSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERT 223 (695)
T ss_dssp EEEEEETTTCC--BCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCC
T ss_pred EEEEEECCCCC--CcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecC
Confidence 89999999984 320 1122223 67999999999999998877 99999998762 22222 1
Q ss_pred ccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccce
Q 001349 896 DIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHR 975 (1094)
Q Consensus 896 ~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~ 975 (1094)
.+...+..+. |+|||+.+++...++. ....|.+||..++...
T Consensus 224 ~~~~~~~~~~-------~SpDG~~l~~~~~~~~------------------------~~~~l~~~~~~~~~~~------- 265 (695)
T 2bkl_A 224 GDPTTFLQSD-------LSRDGKYLFVYILRGW------------------------SENDVYWKRPGEKDFR------- 265 (695)
T ss_dssp CCTTCEEEEE-------ECTTSCCEEEEEEETT------------------------TEEEEEEECTTCSSCE-------
T ss_pred CCCEEEEEEE-------ECCCCCEEEEEEeCCC------------------------CceEEEEEcCCCCceE-------
Confidence 2223455555 8999987644332210 0125666665555433
Q ss_pred eecCCCCCeEEEEEeCCccEEEEEECC--CCEEEEEECCCCeE---EEEecC--CCCEEEEEEeCC-EEEEEEcCCeEEE
Q 001349 976 KLLGKANPVHALQVHNGLVYTASTSLD--GAAVKMWSTSNYNM---VGSLPT--LSEVRAMVVSSE-LVYLGCKGGTVEI 1047 (1094)
Q Consensus 976 ~~~~h~~~V~sl~fs~~~~~las~s~D--g~~I~iwd~~~~~~---~~~~~~--~~~v~~l~~spd-~l~sgs~dg~I~v 1047 (1094)
.+..+...+....++++. +++....+ ...|.+||+.++.. ...+.+ ...+..++++.+ ++++...|+..++
T Consensus 266 ~l~~~~~~~~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l 344 (695)
T 2bkl_A 266 LLVKGVGAKYEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEV 344 (695)
T ss_dssp EEEECSSCCEEEEEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEE
T ss_pred EeecCCCceEEEEecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEE
Confidence 233344455566665555 55554422 25899999987653 333333 445788888877 6777888998888
Q ss_pred EECC-CCcEEEEecccCCcceEEEEEcCCCCEEEEEe----CCCcEEEEeC
Q 001349 1048 WDQK-RQIRIETLQTGTSGKVQCMALDDNEEFLVIGT----SDGRIQAWGL 1093 (1094)
Q Consensus 1048 wd~~-t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs----~DG~I~iWdl 1093 (1094)
|.+. +++....+...+.+.|..++++||++.++... ..++|++||+
T Consensus 345 ~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~ 395 (695)
T 2bkl_A 345 RVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSV 395 (695)
T ss_dssp EEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEET
T ss_pred EEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence 8654 46666666433366788899999998776332 3478999986
No 185
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.45 E-value=6.8e-14 Score=146.09 Aligned_cols=71 Identities=17% Similarity=0.376 Sum_probs=63.4
Q ss_pred CCCCceeccCccccccCcEEc-CCcccccHHhHHHHHHhC-CCCCCC--CCcCCCCCCCCChhHHHHHHHHHHHHh
Q 001349 159 TPPKDFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERG-NSSCPI--TRQKLSSTKLPKTNYVLKRLIASWQEQ 230 (1094)
Q Consensus 159 ~~~~~~~CpIc~~~~~dPv~~-~cGhtfc~~ci~~~~~~~-~~~CP~--c~~~~~~~~~~~pN~~l~~~i~~~~~~ 230 (1094)
....+|.||||+++|+|||+. .|||+||+.||..||..+ ...||+ |++.+...++. ||..|+++|+.|+.+
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~-pN~~L~~lve~~k~r 251 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFV-RDPIMELRCKIAKMK 251 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEE-ECHHHHHHHHHHHHH
T ss_pred CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCC-cCHHHHHHHHHHHHH
Confidence 345689999999999999985 999999999999999863 346999 99999999997 999999999999875
No 186
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.45 E-value=2.2e-11 Score=137.99 Aligned_cols=250 Identities=9% Similarity=-0.023 Sum_probs=159.4
Q ss_pred cCcEEEEee---------CCCCeEEEeCCcc-eeecccCCCcEEEEEEeCC--EEEEEECC---C--eEEEEecCCCcce
Q 001349 784 EMVKVLSNG---------HDSSADFWNHREL-VHVDSSENGKVLSIACFRD--KIFSGHSD---G--TIKVWTGRGSILH 846 (1094)
Q Consensus 784 d~~~l~s~s---------~dg~I~vWd~~~~-~~~~~~h~~~V~~l~fspd--~LaSgs~D---g--~I~vWd~~t~~~~ 846 (1094)
||.+++... .++.|.+|+.... ...+ ..+..+.|+|| .|+.++.+ + .|.+||+.++ .
T Consensus 23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g--~ 96 (347)
T 2gop_A 23 KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETL--S 96 (347)
T ss_dssp ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTT--E
T ss_pred CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCC--c
Confidence 888877642 3567888888732 2222 56889999997 67766543 3 4888898887 3
Q ss_pred eEEEecccCCCeEEEEEecCCCEEEEEeCC---------------------------CcEEEEECCCCce-EEEEecccC
Q 001349 847 LIQQIREHTKAVTGLAILQSGEMLYSGSLD---------------------------KTARVWSIGNEEI-HCVQVHDIK 898 (1094)
Q Consensus 847 ~~~~l~~H~~~V~sv~fspdg~~LaSgs~D---------------------------gtI~vWdi~~~~~-~~~~~~~~~ 898 (1094)
...... +.. +..+.|+|||+.|+.++.+ ..|.+||+.+++. ..+.. .
T Consensus 97 ~~~l~~-~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~---~ 171 (347)
T 2gop_A 97 SKKILE-AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK---P 171 (347)
T ss_dssp EEEEEE-ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE---E
T ss_pred eEEEEc-CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC---C
Confidence 333332 334 9999999999999888743 5688999988864 33332 2
Q ss_pred ccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEc-CCeEEEEECCCCceeEEeccceee
Q 001349 899 DQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQ-DGAIQEIDLATGTFATIQTGHRKL 977 (1094)
Q Consensus 899 ~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~-Dg~I~iwDl~~~~~~~~~~~~~~~ 977 (1094)
.+..+. |+||| .+++...++.. . ... ...|.++| +++... +
T Consensus 172 -~~~~~~-------~spdg-~~~~~~~~~~~-------~-------------~~~~~~~l~~~d--~~~~~~-------l 213 (347)
T 2gop_A 172 -RFSSGI-------WHRDK-IVVNVPHREII-------P-------------QYFKFWDIYIWE--DGKEEK-------M 213 (347)
T ss_dssp -TTCEEE-------EETTE-EEEEEECCCSS-------C-------------CSSCCEEEEEEE--TTEEEE-------E
T ss_pred -Cccccc-------CCCCe-EEEEEeccccc-------c-------------cccccccEEEeC--CCceEE-------e
Confidence 455554 88888 43333221100 0 000 12344555 444322 1
Q ss_pred cCCCCCeEEEEEeCCccEEEEEECCC-------CEEEEEECCCCeEEEEec-CCCCEEE-EEEeCC-EEEEEEcCCeEEE
Q 001349 978 LGKANPVHALQVHNGLVYTASTSLDG-------AAVKMWSTSNYNMVGSLP-TLSEVRA-MVVSSE-LVYLGCKGGTVEI 1047 (1094)
Q Consensus 978 ~~h~~~V~sl~fs~~~~~las~s~Dg-------~~I~iwd~~~~~~~~~~~-~~~~v~~-l~~spd-~l~sgs~dg~I~v 1047 (1094)
..+ ..+..+ +|++.+++..+.++ ..|.+|| +++...... +...+.. +.|+ | ++++++.++.+++
T Consensus 214 ~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg~~~~~~~~~~~~l 287 (347)
T 2gop_A 214 FEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GKVYFTLFEEGSVNL 287 (347)
T ss_dssp EEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TEEEEEEEETTEEEE
T ss_pred ccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-CcEEEEEecCCcEEE
Confidence 122 344444 88888777766442 3788888 555444333 3466775 8898 7 6778889999999
Q ss_pred EECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcE-EEEeC
Q 001349 1048 WDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRI-QAWGL 1093 (1094)
Q Consensus 1048 wd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I-~iWdl 1093 (1094)
| +.+++....+ .+.+.|.+++|+| .++++++.+++. .+|.+
T Consensus 288 ~-~~~g~~~~~~--~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~ 329 (347)
T 2gop_A 288 Y-IWDGEIKPIA--KGRHWIMGFDVDE--IVVYLKETATRLRELFTW 329 (347)
T ss_dssp E-EESSSEEEEE--CSSSEEEEEEESS--SEEEEEECSSSCCEEEEE
T ss_pred E-EcCCceEEEe--cCCCeEEeeeeeC--cEEEEEcCCCChHHheEe
Confidence 9 8777654444 3567899999999 677888777765 77754
No 187
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.44 E-value=3.6e-14 Score=140.10 Aligned_cols=68 Identities=22% Similarity=0.357 Sum_probs=61.9
Q ss_pred CCceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCC-CCCChhHHHHHHHHHHHH
Q 001349 161 PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSST-KLPKTNYVLKRLIASWQE 229 (1094)
Q Consensus 161 ~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~-~~~~pN~~l~~~i~~~~~ 229 (1094)
++++.||||+++|.+||+++|||+||+.||..|+..+...||.||..+... .+. +|..|+++++.|..
T Consensus 76 ~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~-~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMI-PNEILQTLLDLFFP 144 (150)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCC-BCHHHHHHHHHHST
T ss_pred ccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCC-CCHHHHHHHHHHhh
Confidence 348999999999999999999999999999999997666899999999987 675 99999999999874
No 188
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.44 E-value=6.5e-12 Score=144.70 Aligned_cols=268 Identities=10% Similarity=-0.023 Sum_probs=164.8
Q ss_pred ceeecccCCCcEEE-----EEEeCC--EEEEEEC-CC--eEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEe
Q 001349 805 LVHVDSSENGKVLS-----IACFRD--KIFSGHS-DG--TIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGS 874 (1094)
Q Consensus 805 ~~~~~~~h~~~V~~-----l~fspd--~LaSgs~-Dg--~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs 874 (1094)
....+..|.+.... .+|+|| +|+.++. +| .|.+||+.++ .......+|...+..+.|+|||+.|+.++
T Consensus 22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g--~~~~lt~~~~~~~~~~~~spdg~~l~~~~ 99 (388)
T 3pe7_A 22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ--VATQLTEGRGDNTFGGFLSPDDDALFYVK 99 (388)
T ss_dssp EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTC--EEEECCCSSCBCSSSCEECTTSSEEEEEE
T ss_pred ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCC--ceEEeeeCCCCCccceEEcCCCCEEEEEe
Confidence 34455666666666 889997 7777776 67 4888899988 55555566666666788999999999999
Q ss_pred CCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcC
Q 001349 875 LDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQD 954 (1094)
Q Consensus 875 ~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~D 954 (1094)
.++.|++||+.+++...+.... ...+.... ..++|+|+.++....++.- |..... ...+ ...+....+
T Consensus 100 ~~~~l~~~d~~~g~~~~~~~~~-~~~~~~~~-----~~~~~dg~~l~~~~~~~~~--~~~~~~--~~~~--~~~~~~~~~ 167 (388)
T 3pe7_A 100 DGRNLMRVDLATLEENVVYQVP-AEWVGYGT-----WVANSDCTKLVGIEIRRED--WVPLTD--WKKF--HEFYFTKPC 167 (388)
T ss_dssp TTTEEEEEETTTCCEEEEEECC-TTEEEEEE-----EEECTTSSEEEEEEEEGGG--CCCCCS--HHHH--HHHGGGCCC
T ss_pred CCCeEEEEECCCCcceeeeech-hhcccccc-----eeECCCCCeeccccccCcc--cccccc--cchh--hhhhccCCc
Confidence 9999999999998744433321 12222221 1257888776542211100 000000 0000 000112345
Q ss_pred CeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeC-CccEEEEEECCC-----CEEEEEECCCCeEEEEecCC--CCE
Q 001349 955 GAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN-GLVYTASTSLDG-----AAVKMWSTSNYNMVGSLPTL--SEV 1026 (1094)
Q Consensus 955 g~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~-~~~~las~s~Dg-----~~I~iwd~~~~~~~~~~~~~--~~v 1026 (1094)
+.|.+||+.+++... +..+...+..+.|+| ++..++..+.++ ..|.+||...+.......+. ..+
T Consensus 168 ~~l~~~d~~~g~~~~-------l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 240 (388)
T 3pe7_A 168 CRLMRVDLKTGESTV-------ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESC 240 (388)
T ss_dssp EEEEEEETTTCCEEE-------EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEE
T ss_pred ceEEEEECCCCceEE-------eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCccc
Confidence 789999999987643 233456789999999 998887776531 26888887765543333333 357
Q ss_pred EEEEEeCC--EEEE-EEcCC----eEEEEECCCCcEE--EEecccCCcc---eEEEEEcCCCCEEEEE---------eCC
Q 001349 1027 RAMVVSSE--LVYL-GCKGG----TVEIWDQKRQIRI--ETLQTGTSGK---VQCMALDDNEEFLVIG---------TSD 1085 (1094)
Q Consensus 1027 ~~l~~spd--~l~s-gs~dg----~I~vwd~~t~~~~--~~l~~~h~~~---I~~l~~Spdg~~L~sg---------s~D 1085 (1094)
..+.|+|| .|+. +..++ .|++||+.+++.. ..+. ++... ...++|+|||+.|+.. ..+
T Consensus 241 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 319 (388)
T 3pe7_A 241 THEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMP-ACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIEND 319 (388)
T ss_dssp EEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEEC-CEEEEEECTTSSEEEEEECCC------------CCC
T ss_pred ccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCC-CceeeeecCCCCeEccCCCcceeEeeeccccccCCC
Confidence 78899998 3443 33322 3999999998743 3331 21110 1223799999988754 456
Q ss_pred CcEEEEeCC
Q 001349 1086 GRIQAWGLS 1094 (1094)
Q Consensus 1086 G~I~iWdls 1094 (1094)
+.|++||+.
T Consensus 320 ~~i~~~d~~ 328 (388)
T 3pe7_A 320 PFLYVFNMK 328 (388)
T ss_dssp CEEEEEETT
T ss_pred CEEEEEecc
Confidence 689999863
No 189
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.44 E-value=1.7e-11 Score=134.99 Aligned_cols=219 Identities=10% Similarity=0.075 Sum_probs=154.3
Q ss_pred eCC-EEEEEECCCeEEEEecCCCcceeEEEecccC-CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCc
Q 001349 822 FRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHT-KAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKD 899 (1094)
Q Consensus 822 spd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~-~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~ 899 (1094)
+|+ +|++++.|+.|.+||..++ +.+.++..+. ..+.++.++|+|++++ +.++.|..||. +|+...........
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG--~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~ 77 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTK--EIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGC 77 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTT--EEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTC
T ss_pred CCCcEEEeeCCCCEEEEEECCCC--eEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCc
Confidence 455 8999999999999999999 7888888776 4789999999999988 45778999999 56422221111112
Q ss_pred cceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEc-CCeEEEEECCCCceeEEeccceeec
Q 001349 900 QIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQ-DGAIQEIDLATGTFATIQTGHRKLL 978 (1094)
Q Consensus 900 ~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~-Dg~I~iwDl~~~~~~~~~~~~~~~~ 978 (1094)
.+.++. +.++|+.+ ++.+. ++.|..+|. +|+.+..+.......
T Consensus 78 ~~~~~~-------~~~dG~~l----------------------------v~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~ 121 (276)
T 3no2_A 78 EMQTAR-------ILPDGNAL----------------------------VAWCGHPSTILEVNM-KGEVLSKTEFETGIE 121 (276)
T ss_dssp EEEEEE-------ECTTSCEE----------------------------EEEESTTEEEEEECT-TSCEEEEEEECCSCS
T ss_pred cccccE-------ECCCCCEE----------------------------EEecCCCCEEEEEeC-CCCEEEEEeccCCCC
Confidence 344433 67777753 34444 556666664 455543332111111
Q ss_pred CCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEE
Q 001349 979 GKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRI 1056 (1094)
Q Consensus 979 ~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~ 1056 (1094)
++......+.+.+++.++++...++ .|..||.. |+.+.++.....+.++.+.++ .+++++.++.|..||..+|+.+
T Consensus 122 ~~~~~~~~v~~~~~G~~lv~~~~~~-~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~ 199 (276)
T 3no2_A 122 RPHAQFRQINKNKKGNYLVPLFATS-EVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIV 199 (276)
T ss_dssp SGGGSCSCCEECTTSCEEEEETTTT-EEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEE
T ss_pred cccccccCceECCCCCEEEEecCCC-EEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEE
Confidence 2223445567789999998887775 99999998 999999986666667777766 6777777889999999999999
Q ss_pred EEeccc-----CCcceEEEEEcCCCCEEEEEe
Q 001349 1057 ETLQTG-----TSGKVQCMALDDNEEFLVIGT 1083 (1094)
Q Consensus 1057 ~~l~~~-----h~~~I~~l~~Spdg~~L~sgs 1083 (1094)
..+... ....+..++..++|.++++..
T Consensus 200 w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 200 RRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp EEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred EEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 988421 112478899999999888773
No 190
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.44 E-value=2.9e-11 Score=134.14 Aligned_cols=250 Identities=10% Similarity=0.046 Sum_probs=161.6
Q ss_pred eecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 001349 807 HVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWS 883 (1094)
Q Consensus 807 ~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWd 883 (1094)
..+..+.....+++|+|+ +++++..++.|..||..++ ...+..+...+.+++|+++|+++++...++.|.+||
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d 96 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ----LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQR 96 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC----EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEEC
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC----eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEc
Confidence 334455667889999985 6888889999999999876 344556778899999999999888887788999999
Q ss_pred CCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECC
Q 001349 884 IGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLA 963 (1094)
Q Consensus 884 i~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~ 963 (1094)
..+++...+........ ...+..++++|+|+.+++....|....+.... .......+.|..||..
T Consensus 97 ~~~g~~~~~~~~~~~~~----~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~-----------~~~~~~~~~l~~~~~~ 161 (296)
T 3e5z_A 97 EPGGEWESIADSFEGKK----LNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYG-----------GEMELPGRWVFRLAPD 161 (296)
T ss_dssp STTCCEEEEECEETTEE----CCCCCCEEECTTSCEEEEECSHHHHCGGGSSC-----------CCCCSSSCEEEEECTT
T ss_pred CCCCcEEEEeeccCCCC----CCCCCCEEECCCCCEEEECCcccccccccccc-----------ccccCCCcEEEEECCC
Confidence 98876443322111100 01122344778777433211000000000000 0000013456666655
Q ss_pred CCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECC-CCeE---EEEec-CCCCEEEEEEeCC-EEE
Q 001349 964 TGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTS-NYNM---VGSLP-TLSEVRAMVVSSE-LVY 1037 (1094)
Q Consensus 964 ~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~-~~~~---~~~~~-~~~~v~~l~~spd-~l~ 1037 (1094)
+... .+..+......++|+|++..+++.+.+ +.|.+||+. ++.. ...+. +...+.+++++++ .++
T Consensus 162 -g~~~-------~~~~~~~~~~gi~~s~dg~~lv~~~~~-~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~ 232 (296)
T 3e5z_A 162 -GTLS-------APIRDRVKPNGLAFLPSGNLLVSDTGD-NATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIW 232 (296)
T ss_dssp -SCEE-------EEECCCSSEEEEEECTTSCEEEEETTT-TEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEE
T ss_pred -CCEE-------EeecCCCCCccEEECCCCCEEEEeCCC-CeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEE
Confidence 4432 223344567899999999888555545 499999987 5554 23332 3445678999988 566
Q ss_pred EEEcCCeEEEEECCCCcEEEEecccCCcceEEEEE-cCCCCEEEEEeCCCcE
Q 001349 1038 LGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMAL-DDNEEFLVIGTSDGRI 1088 (1094)
Q Consensus 1038 sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~-Spdg~~L~sgs~DG~I 1088 (1094)
++. ++.|.+||.. ++.+..+. .+.. +++++| +|+++.|++++.+|..
T Consensus 233 v~~-~~~v~~~~~~-g~~~~~~~-~~~~-~~~~~f~~~d~~~L~v~t~~~l~ 280 (296)
T 3e5z_A 233 ASA-GDGVHVLTPD-GDELGRVL-TPQT-TSNLCFGGPEGRTLYMTVSTEFW 280 (296)
T ss_dssp EEE-TTEEEEECTT-SCEEEEEE-CSSC-CCEEEEESTTSCEEEEEETTEEE
T ss_pred EEc-CCeEEEECCC-CCEEEEEE-CCCC-ceeEEEECCCCCEEEEEcCCeEE
Confidence 666 8899999986 77777774 4555 999999 5899999998887543
No 191
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.44 E-value=4.3e-11 Score=135.35 Aligned_cols=257 Identities=10% Similarity=-0.011 Sum_probs=172.8
Q ss_pred CCCCeEEEeCCcce--eec-c-----cCCCcEEEEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEE
Q 001349 793 HDSSADFWNHRELV--HVD-S-----SENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAI 863 (1094)
Q Consensus 793 ~dg~I~vWd~~~~~--~~~-~-----~h~~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~f 863 (1094)
.+++|.+||..+.. ... . ........+.+.++ .+++...+++|.+||..++ +.+.++. .......+++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~--~~~~~i~-~~~~p~~i~~ 91 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTF--KEVGRIT-GFTSPRYIHF 91 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTC--CEEEEEE-CCSSEEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEECccc--EEEEEcC-CCCCCcEEEE
Confidence 47899999987322 111 1 12245688888887 4455556799999999998 6777774 4567899999
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEE
Q 001349 864 LQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLAL 943 (1094)
Q Consensus 864 spdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~ 943 (1094)
+++++..++...++.|.+||..+++....... .... .....+..+++
T Consensus 92 ~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~--g~~~-------------------------------~~~~~p~~i~~ 138 (328)
T 3dsm_A 92 LSDEKAYVTQIWDYRIFIINPKTYEITGYIEC--PDMD-------------------------------MESGSTEQMVQ 138 (328)
T ss_dssp EETTEEEEEEBSCSEEEEEETTTTEEEEEEEC--TTCC-------------------------------TTTCBCCCEEE
T ss_pred eCCCeEEEEECCCCeEEEEECCCCeEEEEEEc--CCcc-------------------------------ccCCCcceEEE
Confidence 99985555544899999999998753221111 1100 00001122233
Q ss_pred eCCEEEEEE--cCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECC---------CCEEEEEECC
Q 001349 944 VQGKVYCGC--QDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLD---------GAAVKMWSTS 1012 (1094)
Q Consensus 944 s~~~l~sgs--~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~D---------g~~I~iwd~~ 1012 (1094)
.++.++++. .++.|.+||+.+++....... ......+.+++++.+.+++..+ .+.|.+||..
T Consensus 139 ~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~-------g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~ 211 (328)
T 3dsm_A 139 YGKYVYVNCWSYQNRILKIDTETDKVVDELTI-------GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAE 211 (328)
T ss_dssp ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC-------SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETT
T ss_pred ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc-------CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECC
Confidence 344566665 488999999999887643321 1235678899988877776543 1489999999
Q ss_pred CCeEEEEecC--CCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEE-ecccCCcceEEEEEcC-CCCEEEEE----
Q 001349 1013 NYNMVGSLPT--LSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIET-LQTGTSGKVQCMALDD-NEEFLVIG---- 1082 (1094)
Q Consensus 1013 ~~~~~~~~~~--~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~-l~~~h~~~I~~l~~Sp-dg~~L~sg---- 1082 (1094)
+++....+.. ...+..++++|+ .++++.. .|.+||..+++.... +...+......++++| ++.+.++.
T Consensus 212 t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y 289 (328)
T 3dsm_A 212 TFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDY 289 (328)
T ss_dssp TTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTS
T ss_pred CCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEccccc
Confidence 9998877763 457899999986 6666554 899999998875321 1111245789999999 55555665
Q ss_pred eCCCcEEEEeCC
Q 001349 1083 TSDGRIQAWGLS 1094 (1094)
Q Consensus 1083 s~DG~I~iWdls 1094 (1094)
..+|+|.+||..
T Consensus 290 ~~~~~V~v~d~~ 301 (328)
T 3dsm_A 290 QQQGIVYRYSPQ 301 (328)
T ss_dssp SSEEEEEEECTT
T ss_pred ccCCEEEEECCC
Confidence 578999999863
No 192
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.41 E-value=5.1e-14 Score=129.28 Aligned_cols=69 Identities=17% Similarity=0.358 Sum_probs=62.7
Q ss_pred CCceeccCccccccCcEEc-CCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHHHHhC
Q 001349 161 PKDFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQN 231 (1094)
Q Consensus 161 ~~~~~CpIc~~~~~dPv~~-~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~~~~ 231 (1094)
++++.||||++.|.+||++ +|||+||+.||..|+.. ...||.||+.+....+. +|..|+++++.++...
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~-~n~~l~~~i~~~~~~~ 89 (99)
T 2y43_A 20 DDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLK-NNRILDELVKSLNFAR 89 (99)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCE-ECHHHHHHHHHHHHHH
T ss_pred CCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCChhhCC-cCHHHHHHHHHHHHHH
Confidence 3479999999999999998 99999999999999986 45899999999988886 9999999999998754
No 193
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.41 E-value=1.2e-10 Score=128.21 Aligned_cols=231 Identities=7% Similarity=0.099 Sum_probs=153.2
Q ss_pred ccccccCcEEEEeeCCCCeEEEeCCc-ceeecc------cCCCcEEEEEEe-CC-EEEEEEC--CCeEEEEecCCCccee
Q 001349 779 SPLAFEMVKVLSNGHDSSADFWNHRE-LVHVDS------SENGKVLSIACF-RD-KIFSGHS--DGTIKVWTGRGSILHL 847 (1094)
Q Consensus 779 ~~~~~d~~~l~s~s~dg~I~vWd~~~-~~~~~~------~h~~~V~~l~fs-pd-~LaSgs~--Dg~I~vWd~~t~~~~~ 847 (1094)
..+.+++..+++...++.|.+||... ....+. +|...+.++++. ++ .++.++. ++.|.+||. ++ ..
T Consensus 35 v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~-~g--~~ 111 (286)
T 1q7f_A 35 VAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YG--QF 111 (286)
T ss_dssp EEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-TS--CE
T ss_pred EEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECC-CC--cE
Confidence 34556778888888899999999773 222221 344678999995 54 5555543 899999994 45 35
Q ss_pred EEEec-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeC
Q 001349 848 IQQIR-EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRN 926 (1094)
Q Consensus 848 ~~~l~-~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~ 926 (1094)
+..+. .+...+.+++++++|+++++.+.++.|.+||........+........+..++ ++++|+.
T Consensus 112 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~-------~~~~g~l------- 177 (286)
T 1q7f_A 112 VRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVV-------VNDKQEI------- 177 (286)
T ss_dssp EEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEE-------ECSSSEE-------
T ss_pred EEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEE-------ECCCCCE-------
Confidence 55553 34567899999999998888888899999997653222221111112223333 5555432
Q ss_pred CeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEE
Q 001349 927 GKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAV 1006 (1094)
Q Consensus 927 g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I 1006 (1094)
+++.+.++.|++||.. +..+..+.. .++...+..+++++++.++++...+++.|
T Consensus 178 ---------------------~v~~~~~~~i~~~~~~-g~~~~~~~~----~g~~~~p~~i~~d~~G~l~v~~~~~~~~i 231 (286)
T 1q7f_A 178 ---------------------FISDNRAHCVKVFNYE-GQYLRQIGG----EGITNYPIGVGINSNGEILIADNHNNFNL 231 (286)
T ss_dssp ---------------------EEEEGGGTEEEEEETT-CCEEEEESC----TTTSCSEEEEEECTTCCEEEEECSSSCEE
T ss_pred ---------------------EEEECCCCEEEEEcCC-CCEEEEEcc----CCccCCCcEEEECCCCCEEEEeCCCCEEE
Confidence 3344567899999974 444432211 12335788999999998888776553389
Q ss_pred EEEECCCCeEEEEec-C--CCCEEEEEEeCC-EEEEEEcCCeEEEEECCCC
Q 001349 1007 KMWSTSNYNMVGSLP-T--LSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQ 1053 (1094)
Q Consensus 1007 ~iwd~~~~~~~~~~~-~--~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~ 1053 (1094)
.+||. +++.+..+. + ...+.+++++|+ .+++++.+++|++|+....
T Consensus 232 ~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 232 TIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQL 281 (286)
T ss_dssp EEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSCC
T ss_pred EEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEECCCCeEEEEEcccc
Confidence 99995 566666665 2 234789999998 5555578999999997654
No 194
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.41 E-value=7e-14 Score=128.40 Aligned_cols=71 Identities=15% Similarity=0.236 Sum_probs=64.0
Q ss_pred CCceeccCccccccCcEE-cCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHHHHhCC
Q 001349 161 PKDFVCPITTHIFDDPVT-LETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNP 232 (1094)
Q Consensus 161 ~~~~~CpIc~~~~~dPv~-~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~~~~~ 232 (1094)
.+++.||||+++|.+||+ ++|||+||+.||..|+......||.||..+....+. +|+.+.++++.......
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~-~~~~~~~i~~~~~~l~~ 91 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELV-NCRWAEEVTQQLDTLQL 91 (100)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCE-ECTTHHHHHHHHHHHCC
T ss_pred CCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhH-hhHHHHHHHHHHHHHHH
Confidence 348999999999999999 999999999999999998656899999999988887 99999999998877643
No 195
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.38 E-value=8.7e-14 Score=123.97 Aligned_cols=65 Identities=20% Similarity=0.465 Sum_probs=56.3
Q ss_pred CCCCceeccCccccccCcEEcCCcccccHHhHHHHHHhC-----CCCCCCCCcCCCCCCCCChhHHHHHHH
Q 001349 159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERG-----NSSCPITRQKLSSTKLPKTNYVLKRLI 224 (1094)
Q Consensus 159 ~~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~-----~~~CP~c~~~~~~~~~~~pN~~l~~~i 224 (1094)
.+.+++.||||++.|.+|++++|||+||+.||..|+... ...||.||+.+....+. +|+.|+++|
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~-~n~~l~~~v 84 (85)
T 2ecw_A 15 MIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLK-PNLHVANIV 84 (85)
T ss_dssp CCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCE-ECSCCCSSC
T ss_pred hCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCC-cCHHHHHhh
Confidence 455689999999999999999999999999999999873 55799999999988886 887765543
No 196
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.37 E-value=6.6e-14 Score=132.69 Aligned_cols=66 Identities=21% Similarity=0.355 Sum_probs=60.4
Q ss_pred CCceeccCccccccCcEEc-CCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHHHHh
Q 001349 161 PKDFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQ 230 (1094)
Q Consensus 161 ~~~~~CpIc~~~~~dPv~~-~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~~~ 230 (1094)
.+++.||||+++|.+||++ +|||+||+.||..|+. ..||.||..+....+. +|+.|+++++.+...
T Consensus 20 ~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~-~n~~l~~l~~~~~~~ 86 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLK-INRQLDSMIQLCSKL 86 (117)
T ss_dssp HHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCC-CCHHHHHHHHHHHHH
T ss_pred hhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCcccccc-ccHHHHHHHHHHHHH
Confidence 3489999999999999999 9999999999999987 5799999999888887 999999999998764
No 197
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.37 E-value=1.9e-14 Score=126.33 Aligned_cols=64 Identities=25% Similarity=0.485 Sum_probs=55.3
Q ss_pred CCCCceeccCccccccCcEEcCCcccccHHhHHHHHHhC------CCCCCCCCcCCCCCCCCChhHHHHHH
Q 001349 159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERG------NSSCPITRQKLSSTKLPKTNYVLKRL 223 (1094)
Q Consensus 159 ~~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~------~~~CP~c~~~~~~~~~~~pN~~l~~~ 223 (1094)
.+++++.||||++.|.+|++++|||+||+.||.+|+... ...||.||+.+....+. +|+.|+++
T Consensus 8 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~-~n~~l~~l 77 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQ-ANQHLANI 77 (79)
T ss_dssp CCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGG-TCSSSCCC
T ss_pred hcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCC-cCHHHHHh
Confidence 345689999999999999999999999999999999863 45799999999988886 88876554
No 198
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.37 E-value=5.9e-13 Score=114.93 Aligned_cols=61 Identities=21% Similarity=0.414 Sum_probs=49.4
Q ss_pred CCCCCCceeccCccccccCcEEcC-CcccccHHhHHHHHHhC-CCCCCCCCcCCCCCCCCChh
Q 001349 157 KHTPPKDFVCPITTHIFDDPVTLE-TGQTYERRAIQEWIERG-NSSCPITRQKLSSTKLPKTN 217 (1094)
Q Consensus 157 ~~~~~~~~~CpIc~~~~~dPv~~~-cGhtfc~~ci~~~~~~~-~~~CP~c~~~~~~~~~~~pN 217 (1094)
...+++++.||||+++|.+||+++ |||+||+.||.+|+... ...||.||+.+...+.+.+|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n 71 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP 71 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred cccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence 345566999999999999999999 99999999999999864 35799999985543332255
No 199
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.37 E-value=1e-09 Score=132.80 Aligned_cols=296 Identities=11% Similarity=0.108 Sum_probs=195.2
Q ss_pred CcEEEEeeCCCCeEEEeCCc--ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecC--CCcceeEEEecccCCCe
Q 001349 785 MVKVLSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGR--GSILHLIQQIREHTKAV 858 (1094)
Q Consensus 785 ~~~l~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~--t~~~~~~~~l~~H~~~V 858 (1094)
...+++...++.|.+||..+ .+..+. ....+..+.|+|| ++++++.||.|.+||+. ++ +.+.++.... ..
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~-~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~--~~v~~i~~G~-~P 242 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTYEIKTVLD-TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP--TTVAEIKIGS-EA 242 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSC--CEEEEEECCS-EE
T ss_pred ceEEEEeCCCCeEEEEECCCCeEEEEEe-CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCC--cEeEEEecCC-CC
Confidence 45778888899999999874 333332 2345779999997 88889999999999996 66 5667776433 46
Q ss_pred EEEEEe----cCCCEEEEEeC-CCcEEEEECCCCceE-EEEeccc--------Cc-cceeeeecCceEEEeeCCCeEEEE
Q 001349 859 TGLAIL----QSGEMLYSGSL-DKTARVWSIGNEEIH-CVQVHDI--------KD-QIQNLAVSNSILCFIPQGAGIKVH 923 (1094)
Q Consensus 859 ~sv~fs----pdg~~LaSgs~-DgtI~vWdi~~~~~~-~~~~~~~--------~~-~V~~v~~~~~~~~fspdg~~l~~~ 923 (1094)
..++|+ |||+++++++. +++|.|||..+.+.. .+..... .. .+..+. +++++..+.+.
T Consensus 243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~-------~s~~~~~~vv~ 315 (567)
T 1qks_A 243 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAIL-------ASHYRPEFIVN 315 (567)
T ss_dssp EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEE-------ECSSSSEEEEE
T ss_pred ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEE-------EcCCCCEEEEE
Confidence 789999 69998888775 599999999887532 2222110 01 233333 66666554444
Q ss_pred Ee-CCeEEEEcCC-------------CCceEEEEeC--CEEEEEE-cCCeEEEEECCCCceeEEeccceeecCCCCCeEE
Q 001349 924 LR-NGKTKLLNSS-------------KYPKCLALVQ--GKVYCGC-QDGAIQEIDLATGTFATIQTGHRKLLGKANPVHA 986 (1094)
Q Consensus 924 ~~-~g~i~l~~~~-------------~~v~~l~~s~--~~l~sgs-~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~s 986 (1094)
.. .|.+.+++.. .....+.|++ .+++++. .++.|.++|+.+++........ ....|.+.-..
T Consensus 316 ~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vg-g~~Phpg~g~~ 394 (567)
T 1qks_A 316 VKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTG-GQTPHPGRGAN 394 (567)
T ss_dssp ETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS-SSSBCCTTCEE
T ss_pred ecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEecc-CcCCCCcccee
Confidence 33 3666666643 3455667775 3455544 6789999999999876543210 11234322222
Q ss_pred EEEeCC-ccEEEEEECCCCEEEEEECCC-------CeEEEEecCC-CCEEEEEEeCC--EEEEEEc-------CCeEEEE
Q 001349 987 LQVHNG-LVYTASTSLDGAAVKMWSTSN-------YNMVGSLPTL-SEVRAMVVSSE--LVYLGCK-------GGTVEIW 1048 (1094)
Q Consensus 987 l~fs~~-~~~las~s~Dg~~I~iwd~~~-------~~~~~~~~~~-~~v~~l~~spd--~l~sgs~-------dg~I~vw 1048 (1094)
+ ++|+ +.+.++....+++|.++|..+ .+.++++... ..-..+.++|+ ++++... .++|.||
T Consensus 395 ~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~ 473 (567)
T 1qks_A 395 F-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVF 473 (567)
T ss_dssp E-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEE
T ss_pred e-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEE
Confidence 2 5776 555555543334999999987 6788888743 33345778888 7777653 4699999
Q ss_pred ECCCC-----c-EEEEecc-------cCCcceEEEEEcCCCCEEEEEeC-----CCcEEEEeC
Q 001349 1049 DQKRQ-----I-RIETLQT-------GTSGKVQCMALDDNEEFLVIGTS-----DGRIQAWGL 1093 (1094)
Q Consensus 1049 d~~t~-----~-~~~~l~~-------~h~~~I~~l~~Spdg~~L~sgs~-----DG~I~iWdl 1093 (1094)
|+.+. . .+..+.. .....+..+.|+|+|+.+..+.. ++.|.|+|.
T Consensus 474 d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~ 536 (567)
T 1qks_A 474 DIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDD 536 (567)
T ss_dssp EGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEET
T ss_pred ECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEEC
Confidence 99876 2 2233321 12347899999999998877643 789999885
No 200
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.36 E-value=1e-13 Score=131.15 Aligned_cols=67 Identities=27% Similarity=0.412 Sum_probs=59.5
Q ss_pred CCceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCC-------CCCCChhHHHHHHHHHHH
Q 001349 161 PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSS-------TKLPKTNYVLKRLIASWQ 228 (1094)
Q Consensus 161 ~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~-------~~~~~pN~~l~~~i~~~~ 228 (1094)
.+++.||||+++|.+||+++|||+||+.||..|+..+...||.||+.+.. ..+. +|..|.++|++|.
T Consensus 13 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~-~n~~l~~~i~~~~ 86 (115)
T 3l11_A 13 LSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSL-VNVELWTIIQKHY 86 (115)
T ss_dssp HHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCC-BCHHHHHHHHHHS
T ss_pred CCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccch-hhHHHHHHHHHHC
Confidence 44899999999999999999999999999999998766789999999863 5565 7999999999875
No 201
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=1.5e-13 Score=122.46 Aligned_cols=65 Identities=20% Similarity=0.527 Sum_probs=56.2
Q ss_pred CCCCCceeccCccccccCcEEcCCcccccHHhHHHHHHh-----CCCCCCCCCcCCCCCCCCChhHHHHHH
Q 001349 158 HTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIER-----GNSSCPITRQKLSSTKLPKTNYVLKRL 223 (1094)
Q Consensus 158 ~~~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~-----~~~~CP~c~~~~~~~~~~~pN~~l~~~ 223 (1094)
..+.+++.||||++.|.+|++++|||+||+.||..|+.. +...||.||+.+....+. +|+.|+++
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~-~n~~l~~~ 83 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIR-PNRHVANI 83 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCC-CSCCCCCC
T ss_pred HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcC-ccHHHHHh
Confidence 345668999999999999999999999999999999986 355799999999988886 88776554
No 202
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.35 E-value=2.7e-13 Score=126.62 Aligned_cols=68 Identities=18% Similarity=0.386 Sum_probs=60.0
Q ss_pred CCCceeccCccccccCcEEc-CCcccccHHhHHHHHHhCCCCCCCCCcCCCCC----CCCChhHHHHHHHHHHHH
Q 001349 160 PPKDFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLSST----KLPKTNYVLKRLIASWQE 229 (1094)
Q Consensus 160 ~~~~~~CpIc~~~~~dPv~~-~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~----~~~~pN~~l~~~i~~~~~ 229 (1094)
+++++.||||+++|.+||++ +|||+||+.||..|+.. ...||.||..+... .+. +|..|.++++.+..
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~l~-~n~~l~~~i~~~~~ 84 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIR-SDKTLQDIVYKLVP 84 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSSCGGGGEE-ECHHHHHHHHHHST
T ss_pred cCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccccCcccccC-cCHHHHHHHHHHhh
Confidence 34589999999999999997 99999999999999987 46799999998875 565 89999999998763
No 203
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=8.5e-13 Score=111.24 Aligned_cols=55 Identities=13% Similarity=0.353 Sum_probs=49.0
Q ss_pred CCCCceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCC
Q 001349 159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKL 213 (1094)
Q Consensus 159 ~~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~ 213 (1094)
.+++++.||||++.+.+|++++|||+||+.||.+|+..+...||.||+.+...++
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp SCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred cCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 4566899999999999999999999999999999997656689999999887654
No 204
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.35 E-value=3.3e-13 Score=128.06 Aligned_cols=78 Identities=22% Similarity=0.340 Sum_probs=66.2
Q ss_pred CCCCceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHHHHhCCCCCCC
Q 001349 159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPGGLDL 237 (1094)
Q Consensus 159 ~~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~~~~~~~~~~ 237 (1094)
.+++++.||||+++|.+||+++|||+||+.||..|+..+...||.||..+....+. +|..+.+.|..+.-.-+...|.
T Consensus 14 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~-~~~~l~~~i~~l~v~C~n~gC~ 91 (118)
T 3hct_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLF-PDNFAKREILSLMVKCPNEGCL 91 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCE-ECHHHHHHHHTSEEECSSTTCC
T ss_pred CCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcc-cCHHHHHHHccceeECCCCCCC
Confidence 55669999999999999999999999999999999987655899999999988887 9999999998766443333343
No 205
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.35 E-value=3.4e-09 Score=116.61 Aligned_cols=261 Identities=11% Similarity=0.084 Sum_probs=169.3
Q ss_pred ccccCcEEEEeeCCCCeEEEeCCcceeec--ccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCC
Q 001349 781 LAFEMVKVLSNGHDSSADFWNHRELVHVD--SSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTK 856 (1094)
Q Consensus 781 ~~~d~~~l~s~s~dg~I~vWd~~~~~~~~--~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~ 856 (1094)
+.+++...++...++.|.+||........ ..+...+.++++.++ ++++...++.|..||.... .....+..+..
T Consensus 22 ~d~~g~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~--~~~~~~~~~~~ 99 (299)
T 2z2n_A 22 VSDKGKVWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGI--IKEYTLPNPDS 99 (299)
T ss_dssp ECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSC--EEEEECSSTTC
T ss_pred ECCCCCEEEEecCCCcEEEEcCCCCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCc--EEEEeCCCcCC
Confidence 44567766666667889999987322222 234578999999886 5555555889999998633 22222333556
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCC
Q 001349 857 AVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSK 936 (1094)
Q Consensus 857 ~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~ 936 (1094)
.+.++++.++|.++++...++.|.+||. +++............+..+. +.++|.
T Consensus 100 ~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~-------~~~~g~------------------ 153 (299)
T 2z2n_A 100 APYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFIT-------LGSDNA------------------ 153 (299)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEE-------ECTTSC------------------
T ss_pred CceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEE-------EcCCCC------------------
Confidence 7899999999998888878889999998 55433222211112222322 444443
Q ss_pred CceEEEEeCCEEEEEE-cCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCe
Q 001349 937 YPKCLALVQGKVYCGC-QDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN 1015 (1094)
Q Consensus 937 ~v~~l~~s~~~l~sgs-~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~ 1015 (1094)
++++. .++.|..||. +++.... ....+...+..+++++++.+.++...++ .|.+||. ++.
T Consensus 154 -----------l~v~~~~~~~i~~~~~-~g~~~~~-----~~~~~~~~~~~i~~~~~g~l~v~~~~~~-~i~~~~~-~g~ 214 (299)
T 2z2n_A 154 -----------LWFTENQNNAIGRITE-SGDITEF-----KIPTPASGPVGITKGNDDALWFVEIIGN-KIGRITT-SGE 214 (299)
T ss_dssp -----------EEEEETTTTEEEEECT-TCCEEEE-----ECSSTTCCEEEEEECTTSSEEEEETTTT-EEEEECT-TCC
T ss_pred -----------EEEEeCCCCEEEEEcC-CCcEEEe-----eCCCCCCcceeEEECCCCCEEEEccCCc-eEEEECC-CCc
Confidence 44433 4678999998 6665421 1122345688999999888766654444 8999999 665
Q ss_pred EEEE-ec-CCCCEEEEEEeCC-EEEEEE-cCCeEEEEECCCCcEEEEe-cccCCcceEEEEEcCCCCEEEEEeCCCcEEE
Q 001349 1016 MVGS-LP-TLSEVRAMVVSSE-LVYLGC-KGGTVEIWDQKRQIRIETL-QTGTSGKVQCMALDDNEEFLVIGTSDGRIQA 1090 (1094)
Q Consensus 1016 ~~~~-~~-~~~~v~~l~~spd-~l~sgs-~dg~I~vwd~~t~~~~~~l-~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~i 1090 (1094)
.... .. +...+.+++++++ .++++. .++.|.+||. +++. ..+ ...+...+.++++ ++|.+.++.+ .+.|..
T Consensus 215 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~ 290 (299)
T 2z2n_A 215 ITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGK 290 (299)
T ss_dssp EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEE
T ss_pred EEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEE
Confidence 4332 22 3467899999987 555555 6789999998 4543 333 2244567999999 8888777655 455655
Q ss_pred Ee
Q 001349 1091 WG 1092 (1094)
Q Consensus 1091 Wd 1092 (1094)
++
T Consensus 291 ~~ 292 (299)
T 2z2n_A 291 LT 292 (299)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 206
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=5.4e-13 Score=117.52 Aligned_cols=62 Identities=18% Similarity=0.230 Sum_probs=51.9
Q ss_pred CCCCceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHH
Q 001349 159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRL 223 (1094)
Q Consensus 159 ~~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~ 223 (1094)
...+++.||||++.|.+||+++|||+||+.||.+|+.. ...||.||+.+. ..+. +|..+...
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~-~~~~l~~~ 72 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG-GIFN-PAKELMAK 72 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC-SCCE-ECHHHHHH
T ss_pred cCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc-ccCC-cHHHHHHH
Confidence 34458999999999999999999999999999999987 557999999997 4554 88655433
No 207
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.33 E-value=2.8e-13 Score=111.17 Aligned_cols=54 Identities=19% Similarity=0.426 Sum_probs=49.1
Q ss_pred ceeccCccccccCcEEc-CCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhH
Q 001349 163 DFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNY 218 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~~-~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~ 218 (1094)
.|.||||+++|.|||++ +|||+|||.||++|+.. +.+||.+++++...+++ ||.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~~Li-p~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIV-EIV 57 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCE-ECC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChhhcE-ECc
Confidence 68999999999999999 99999999999999987 45699999999999997 774
No 208
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.32 E-value=2.9e-11 Score=139.29 Aligned_cols=245 Identities=8% Similarity=-0.051 Sum_probs=153.1
Q ss_pred EEEEEEeCC--EEEEEEC-C--CeEEEEecCCCcceeEEEecccCCC-eEEEEEecCCCEEEEEeCCCcEEEEECCCCce
Q 001349 816 VLSIACFRD--KIFSGHS-D--GTIKVWTGRGSILHLIQQIREHTKA-VTGLAILQSGEMLYSGSLDKTARVWSIGNEEI 889 (1094)
Q Consensus 816 V~~l~fspd--~LaSgs~-D--g~I~vWd~~t~~~~~~~~l~~H~~~-V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~ 889 (1094)
+..++|+|| +|+.... + ..|.+||+.++ .... +..+... ...+.|+|||++|+.++.++.|++||+.+++.
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~--~~~~-l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~ 114 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQ--QAVQ-LTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEE 114 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTT--EEEE-CCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCC--cEEE-eecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCc
Confidence 677899997 6555543 3 47888899888 3333 3333333 33478999999999999999999999998864
Q ss_pred EEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC--CEEEEE-----EcCCeEEEEEC
Q 001349 890 HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ--GKVYCG-----CQDGAIQEIDL 962 (1094)
Q Consensus 890 ~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~--~~l~sg-----s~Dg~I~iwDl 962 (1094)
..+...... ++++|+.++....++...++.. ...+++ ..++.+ ..+..|.+||+
T Consensus 115 ~~~~~~~~~--------------~~~~g~~l~~~~~~~~~~~~~~-----~~~~spdg~~~~~~~~~~~~~~~~l~~~d~ 175 (396)
T 3c5m_A 115 QVIYTVDEE--------------WKGYGTWVANSDCTKLVGIEIL-----KRDWQPLTSWEKFAEFYHTNPTCRLIKVDI 175 (396)
T ss_dssp EEEEECCTT--------------EEEEEEEEECTTSSEEEEEEEE-----GGGCCCCCSHHHHHHHHHTCCCEEEEEEET
T ss_pred EEEEecccc--------------cCCCCCEEEeccCCcccccccc-----ccccCCCCcceeeeeeccCCCcceEEEEEC
Confidence 443332110 4445544443322222222210 011111 112221 35668999999
Q ss_pred CCCceeEEeccceeecCCCCCeEEEEEeC-CccEEEEEECCC-----CEEEEEECCCCeEEEEecC--CCCEEEEEEeCC
Q 001349 963 ATGTFATIQTGHRKLLGKANPVHALQVHN-GLVYTASTSLDG-----AAVKMWSTSNYNMVGSLPT--LSEVRAMVVSSE 1034 (1094)
Q Consensus 963 ~~~~~~~~~~~~~~~~~h~~~V~sl~fs~-~~~~las~s~Dg-----~~I~iwd~~~~~~~~~~~~--~~~v~~l~~spd 1034 (1094)
.+++..... .+...+..+.|+| ++..++..+.++ ..|.+||+..+.......+ ...+..+.|+||
T Consensus 176 ~~g~~~~~~-------~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spd 248 (396)
T 3c5m_A 176 ETGELEVIH-------QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPD 248 (396)
T ss_dssp TTCCEEEEE-------EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTT
T ss_pred CCCcEEeec-------cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCC
Confidence 988765322 3456788999999 777666655432 2688899876654333332 235788999998
Q ss_pred --EEEEEEcC-----CeEEEEECCCCcEEEEecccCCcceEEEEEcC-CCCEEEEEe----------------CCCcEEE
Q 001349 1035 --LVYLGCKG-----GTVEIWDQKRQIRIETLQTGTSGKVQCMALDD-NEEFLVIGT----------------SDGRIQA 1090 (1094)
Q Consensus 1035 --~l~sgs~d-----g~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Sp-dg~~L~sgs----------------~DG~I~i 1090 (1094)
.++.++.+ +.|++||+.+++...... .. ... +.|+| ||+++++++ .++.|++
T Consensus 249 g~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~--~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~ 324 (396)
T 3c5m_A 249 GSAMAYVSYFKGQTDRVIYKANPETLENEEVMV--MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYV 324 (396)
T ss_dssp SSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE--CC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEE
T ss_pred CCEEEEEecCCCCccceEEEEECCCCCeEEeee--CC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEE
Confidence 45555433 459999999887544331 11 133 89999 999888765 3478999
Q ss_pred EeC
Q 001349 1091 WGL 1093 (1094)
Q Consensus 1091 Wdl 1093 (1094)
||+
T Consensus 325 ~d~ 327 (396)
T 3c5m_A 325 LNT 327 (396)
T ss_dssp EET
T ss_pred Eec
Confidence 986
No 209
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.8e-12 Score=111.29 Aligned_cols=58 Identities=17% Similarity=0.248 Sum_probs=51.0
Q ss_pred CCCCCceeccCccccccCcEEc-CCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChh
Q 001349 158 HTPPKDFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTN 217 (1094)
Q Consensus 158 ~~~~~~~~CpIc~~~~~dPv~~-~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN 217 (1094)
..+.+++.||||++.|.+|+++ +|||+||+.||.+|+.. ...||.||+.+...++. +|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~-~~ 68 (72)
T 2djb_A 10 SELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPL-SG 68 (72)
T ss_dssp CCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSC-CC
T ss_pred hhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccc-cc
Confidence 3455699999999999999997 99999999999999987 56899999999887775 44
No 210
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.30 E-value=6.3e-13 Score=134.27 Aligned_cols=72 Identities=22% Similarity=0.408 Sum_probs=61.0
Q ss_pred CCCCceeccCccccccCcEEc-CCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHHHHh
Q 001349 159 TPPKDFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQ 230 (1094)
Q Consensus 159 ~~~~~~~CpIc~~~~~dPv~~-~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~~~ 230 (1094)
.+.+++.||||++.|.+||++ +|||+||+.||..|+..+...||.||..+.....+.||..|.++|..+...
T Consensus 50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~~ 122 (165)
T 2ckl_B 50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPS 122 (165)
T ss_dssp CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC--
T ss_pred hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHcc
Confidence 344589999999999999997 999999999999999976778999999986543334999999999998653
No 211
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.30 E-value=5e-10 Score=126.49 Aligned_cols=239 Identities=11% Similarity=0.019 Sum_probs=157.7
Q ss_pred ccccccCcEEEEeeCC------------------------CCeEEEeCC--cceeec-ccCCCcEEEEEEeCC--EEEEE
Q 001349 779 SPLAFEMVKVLSNGHD------------------------SSADFWNHR--ELVHVD-SSENGKVLSIACFRD--KIFSG 829 (1094)
Q Consensus 779 ~~~~~d~~~l~s~s~d------------------------g~I~vWd~~--~~~~~~-~~h~~~V~~l~fspd--~LaSg 829 (1094)
..+.++|..+++...+ +.|.+||.. ...... .++-..+..++++++ ++++.
T Consensus 29 va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d 108 (329)
T 3fvz_A 29 VALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTD 108 (329)
T ss_dssp EEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEE
T ss_pred EEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEE
Confidence 4456678888877776 479999986 222222 244568899999986 77788
Q ss_pred ECCCeEEEEecCCCcceeEEEe---------cccCCCeEEEEEec-CCCEEEEEe-CCCcEEEEECCCCceEEEEecccC
Q 001349 830 HSDGTIKVWTGRGSILHLIQQI---------REHTKAVTGLAILQ-SGEMLYSGS-LDKTARVWSIGNEEIHCVQVHDIK 898 (1094)
Q Consensus 830 s~Dg~I~vWd~~t~~~~~~~~l---------~~H~~~V~sv~fsp-dg~~LaSgs-~DgtI~vWdi~~~~~~~~~~~~~~ 898 (1094)
..++.|++||..+.. ..+..+ .++......++|+| +|.++++.+ .++.|++||........+......
T Consensus 109 ~~~~~v~~~~~~g~~-~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~ 187 (329)
T 3fvz_A 109 VALHQVFKLDPHSKE-GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSG 187 (329)
T ss_dssp TTTTEEEEECTTCSS-CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEEECEECCS
T ss_pred CCCCEEEEEeCCCCe-EEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEeccCCCC
Confidence 889999999986541 244554 34555789999999 888888887 689999999544222111111100
Q ss_pred cc-ceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCE-EEEEEcCCeEEEEECCCCceeEEecccee
Q 001349 899 DQ-IQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGK-VYCGCQDGAIQEIDLATGTFATIQTGHRK 976 (1094)
Q Consensus 899 ~~-V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~-l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~ 976 (1094)
.. ...-...+..++++|++ +. +++...++.|++||..+|+.+..+.
T Consensus 188 ~~~~~~~~~~p~gia~d~~~----------------------------g~l~v~d~~~~~I~~~~~~~G~~~~~~~---- 235 (329)
T 3fvz_A 188 SSPRPGQFSVPHSLALVPHL----------------------------DQLCVADRENGRIQCFKTDTKEFVREIK---- 235 (329)
T ss_dssp SSCCTTEESCEEEEEEETTT----------------------------TEEEEEETTTTEEEEEETTTCCEEEEEC----
T ss_pred CCCCCcccCCCcEEEEECCC----------------------------CEEEEEECCCCEEEEEECCCCcEEEEEe----
Confidence 00 00000011222344442 23 4455567899999999888775432
Q ss_pred ecCCCCCeEEEEEeCCccEEEEEEC------CCCEEEEEECCCCeEEEEec----CCCCEEEEEEeCC--EEEEEEcCCe
Q 001349 977 LLGKANPVHALQVHNGLVYTASTSL------DGAAVKMWSTSNYNMVGSLP----TLSEVRAMVVSSE--LVYLGCKGGT 1044 (1094)
Q Consensus 977 ~~~h~~~V~sl~fs~~~~~las~s~------Dg~~I~iwd~~~~~~~~~~~----~~~~v~~l~~spd--~l~sgs~dg~ 1044 (1094)
...+...+..++|+| +..+...+. .+..|++||..+++.+..+. +...+.+++++++ .+++...++.
T Consensus 236 ~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~ 314 (329)
T 3fvz_A 236 HASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNT 314 (329)
T ss_dssp CTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCC
T ss_pred ccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCE
Confidence 134566788999999 444444321 12389999999999998874 4567999999998 5566667899
Q ss_pred EEEEECC
Q 001349 1045 VEIWDQK 1051 (1094)
Q Consensus 1045 I~vwd~~ 1051 (1094)
|++|++.
T Consensus 315 I~~~~~~ 321 (329)
T 3fvz_A 315 VWKFTLT 321 (329)
T ss_dssp EEEEEEE
T ss_pred EEEEeCC
Confidence 9999975
No 212
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.30 E-value=3.2e-10 Score=123.35 Aligned_cols=232 Identities=13% Similarity=0.050 Sum_probs=151.6
Q ss_pred cEEEEEEeCC--EEE-EEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEE
Q 001349 815 KVLSIACFRD--KIF-SGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHC 891 (1094)
Q Consensus 815 ~V~~l~fspd--~La-Sgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~ 891 (1094)
...+++++++ +++ +.+.++.|.+||..++. .......+...+.+++++++|+++++.. ++.|.+||..++....
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTG--TTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-------EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcc--cceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEee
Confidence 7789999886 444 44678999999987652 2222223445788999999999666665 8899999988754221
Q ss_pred EEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEe
Q 001349 892 VQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQ 971 (1094)
Q Consensus 892 ~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~ 971 (1094)
... .....+..+. +.++|+. +++...++.|.+||..+......
T Consensus 102 ~~~-~~~~~p~~i~-------~~~~g~l----------------------------~v~~~~~~~i~~~~~~~~~~~~~- 144 (270)
T 1rwi_B 102 LPF-DGLNYPEGLA-------VDTQGAV----------------------------YVADRGNNRVVKLAAGSKTQTVL- 144 (270)
T ss_dssp CCC-CSCSSEEEEE-------ECTTCCE----------------------------EEEEGGGTEEEEECTTCCSCEEC-
T ss_pred eec-CCcCCCcceE-------ECCCCCE----------------------------EEEECCCCEEEEEECCCceeEee-
Confidence 111 1112223332 5555542 23334567888887655443211
Q ss_pred ccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC-EEEEEE-cCCeEEEE
Q 001349 972 TGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE-LVYLGC-KGGTVEIW 1048 (1094)
Q Consensus 972 ~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd-~l~sgs-~dg~I~vw 1048 (1094)
.......+..+++++++.+.++...++ .|.+||........... +...+.+++++++ .++++. .++.|.+|
T Consensus 145 -----~~~~~~~p~~i~~~~~g~l~v~~~~~~-~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~ 218 (270)
T 1rwi_B 145 -----PFTGLNDPDGVAVDNSGNVYVTDTDNN-RVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKL 218 (270)
T ss_dssp -----CCCSCCSCCCEEECTTCCEEEEEGGGT-EEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEE
T ss_pred -----ccccCCCceeEEEeCCCCEEEEECCCC-EEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEE
Confidence 112224567899999888776665554 89999988766544322 3367899999998 555554 57899999
Q ss_pred ECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1049 DQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1049 d~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
|........ ....+...+.+++++++|+++++...+++|++|++
T Consensus 219 ~~~~~~~~~-~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~ 262 (270)
T 1rwi_B 219 LAGSTTSTV-LPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS 262 (270)
T ss_dssp CTTCSCCEE-CCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred cCCCCccee-eccCCCCCceeEEECCCCCEEEEECCCCEEEEEcC
Confidence 987655433 32234457899999999998888889999999986
No 213
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=2.4e-12 Score=110.95 Aligned_cols=56 Identities=23% Similarity=0.580 Sum_probs=48.5
Q ss_pred CCCCCceeccCccccccCcEEcCCcccccHHhHHHHHHh--CCCCCCCCCcCCCCCCC
Q 001349 158 HTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIER--GNSSCPITRQKLSSTKL 213 (1094)
Q Consensus 158 ~~~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~--~~~~CP~c~~~~~~~~~ 213 (1094)
..+++++.||||++.|.+|++++|||+||+.||..|+.. +...||.||+.+...++
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 345669999999999999999999999999999999973 35579999999876654
No 214
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.29 E-value=4.5e-10 Score=141.58 Aligned_cols=277 Identities=9% Similarity=0.028 Sum_probs=168.4
Q ss_pred cccccccccCcEEEEeeCCCC---eEEEeCCc------ceee-------cccCCCcEEEEEEeCC--EEEEEECC-----
Q 001349 776 RKYSPLAFEMVKVLSNGHDSS---ADFWNHRE------LVHV-------DSSENGKVLSIACFRD--KIFSGHSD----- 832 (1094)
Q Consensus 776 ~~~~~~~~d~~~l~s~s~dg~---I~vWd~~~------~~~~-------~~~h~~~V~~l~fspd--~LaSgs~D----- 832 (1094)
.......++|.+++....++. -.+|.... .... ..+|+..+..++|||| +|+.++.+
T Consensus 109 ~~~~~p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~ 188 (741)
T 1yr2_A 109 ERFGLPQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDW 188 (741)
T ss_dssp CEECCCEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSE
T ss_pred cccCCCEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCce
Confidence 334455689998887665543 55675421 1122 1234447889999997 66655443
Q ss_pred CeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCc--------------EEEEECCCCce--EEEEe-c
Q 001349 833 GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKT--------------ARVWSIGNEEI--HCVQV-H 895 (1094)
Q Consensus 833 g~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~Dgt--------------I~vWdi~~~~~--~~~~~-~ 895 (1094)
.+|++||+.++. .+.. ..+...+..++|+|| +.|+.++.|+. |++|++.++.. ..+.. .
T Consensus 189 ~~i~v~dl~tg~--~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~ 264 (741)
T 1yr2_A 189 RTVKFVGVADGK--PLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATP 264 (741)
T ss_dssp EEEEEEETTTCC--EEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCT
T ss_pred EEEEEEECCCCC--CCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccC
Confidence 369999999984 3332 112222357899999 99998887665 88999987652 12221 1
Q ss_pred ccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCC--ceeEEecc
Q 001349 896 DIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATG--TFATIQTG 973 (1094)
Q Consensus 896 ~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~--~~~~~~~~ 973 (1094)
.+...+..+. |+|||+.+++...++. ..+..|.+||+.++ ...
T Consensus 265 ~~~~~~~~~~-------~SpDG~~l~~~~~~~~-----------------------~~~~~l~~~d~~~~~~~~~----- 309 (741)
T 1yr2_A 265 ELPKRGHGAS-------VSSDGRWVVITSSEGT-----------------------DPVNTVHVARVTNGKIGPV----- 309 (741)
T ss_dssp TCTTCEEEEE-------ECTTSCEEEEEEECTT-----------------------CSCCEEEEEEEETTEECCC-----
T ss_pred CCCeEEEEEE-------ECCCCCEEEEEEEccC-----------------------CCcceEEEEECCCCCCccc-----
Confidence 1112344444 8999987654433220 02347889998876 301
Q ss_pred ceeecCCCCCeEEEEEeCCccEEEEEECCC---CEEEEEECCCC--eEEEEecC-CCCEEEEEEeCC-EEEEEEcCCeEE
Q 001349 974 HRKLLGKANPVHALQVHNGLVYTASTSLDG---AAVKMWSTSNY--NMVGSLPT-LSEVRAMVVSSE-LVYLGCKGGTVE 1046 (1094)
Q Consensus 974 ~~~~~~h~~~V~sl~fs~~~~~las~s~Dg---~~I~iwd~~~~--~~~~~~~~-~~~v~~l~~spd-~l~sgs~dg~I~ 1046 (1094)
..+..+...+....+ +++..++..+.++ ..|.+||+.++ .....+.+ ...+..+.++.+ ++++...|+..+
T Consensus 310 -~~l~~~~~~~~~~~~-~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~ 387 (741)
T 1yr2_A 310 -TALIPDLKAQWDFVD-GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQ 387 (741)
T ss_dssp -EEEECSSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEE
T ss_pred -EEecCCCCceEEEEe-ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEECCEEEEEEEECCEEE
Confidence 223333334444433 5666555555432 36999999874 33333443 344667888877 677778888877
Q ss_pred EEECC-CCcEEEEecccCCcceEEEEEcCCCCEEE-EEe---CCCcEEEEeC
Q 001349 1047 IWDQK-RQIRIETLQTGTSGKVQCMALDDNEEFLV-IGT---SDGRIQAWGL 1093 (1094)
Q Consensus 1047 vwd~~-t~~~~~~l~~~h~~~I~~l~~Spdg~~L~-sgs---~DG~I~iWdl 1093 (1094)
||.+. +++....+...+.+.|..+.++||++.|+ +.+ ..++|++||+
T Consensus 388 l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~ 439 (741)
T 1yr2_A 388 VLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDP 439 (741)
T ss_dssp EEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEET
T ss_pred EEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence 77554 46666666433466789999999987655 322 3478999986
No 215
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.28 E-value=3.9e-10 Score=127.61 Aligned_cols=223 Identities=10% Similarity=0.051 Sum_probs=137.5
Q ss_pred CCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCC---C--cEEEEECCCCceEEEEecccCccceeeee
Q 001349 832 DGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD---K--TARVWSIGNEEIHCVQVHDIKDQIQNLAV 906 (1094)
Q Consensus 832 Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~D---g--tI~vWdi~~~~~~~~~~~~~~~~V~~v~~ 906 (1094)
++.|.+||+.++.. ..+ ..+..+.|||||++|+.++.+ + .|.+||+.+++...+... .. +..+.
T Consensus 42 ~~~l~~~d~~~~~~---~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~--~~-~~~~~- 110 (347)
T 2gop_A 42 ENTIVIENLKNNAR---RFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA--KN-IRSLE- 110 (347)
T ss_dssp EEEEEEEETTTCCE---EEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE--SE-EEEEE-
T ss_pred cceEEEEeCCCCce---EEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC--CC-cccee-
Confidence 67899999998842 223 568899999999999988764 3 378888888764443332 22 55555
Q ss_pred cCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEe-CCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeE
Q 001349 907 SNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALV-QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVH 985 (1094)
Q Consensus 907 ~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s-~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~ 985 (1094)
|+|||+.++....+..-. .....+..+.+. ++.-+.......|.+||+.+++....+. . . .+.
T Consensus 111 ------wspdg~~l~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~------~-~-~~~ 174 (347)
T 2gop_A 111 ------WNEDSRKLLIVGFKRRED--EDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFE------K-P-RFS 174 (347)
T ss_dssp ------ECTTSSEEEEEEECCCC-----------CCCC---------CEEEEEEEETTTTEEEEEEE------E-E-TTC
T ss_pred ------ECCCCCEEEEEEccCCCc--CCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeec------C-C-Ccc
Confidence 999999888776431000 000000011110 1111111234679999999887632221 1 2 577
Q ss_pred EEEEeCCccEEEEEECCC--------CEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcC--------CeEEE
Q 001349 986 ALQVHNGLVYTASTSLDG--------AAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKG--------GTVEI 1047 (1094)
Q Consensus 986 sl~fs~~~~~las~s~Dg--------~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~d--------g~I~v 1047 (1094)
.+.|+|++ +++++..++ ..|.++| +++......+ ..+..+ +|| .++.++.+ +.|++
T Consensus 175 ~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~ 248 (347)
T 2gop_A 175 SGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYI 248 (347)
T ss_dssp EEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEE
T ss_pred cccCCCCe-EEEEEecccccccccccccEEEeC--CCceEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEE
Confidence 89999999 766665442 1455555 5554333334 445444 776 56665533 47888
Q ss_pred EECCCCcEEEEecccCCcceEE-EEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1048 WDQKRQIRIETLQTGTSGKVQC-MALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1048 wd~~t~~~~~~l~~~h~~~I~~-l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
|| +++. ..+..+|...+.. +.|+ || ++++++.+|.+++| +
T Consensus 249 ~d--~~~~-~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~ 289 (347)
T 2gop_A 249 YD--GKEV-MGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-I 289 (347)
T ss_dssp EC--SSCE-EESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-E
T ss_pred EC--CCce-EeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-E
Confidence 88 5554 3443566778886 9999 88 99999999999999 6
No 216
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.28 E-value=2.2e-11 Score=150.54 Aligned_cols=314 Identities=13% Similarity=0.091 Sum_probs=222.0
Q ss_pred HHHHhhhccccchHhHHHHHHHHHHHHHhc--cchHHHHhhchhHHHhhhHhhhccC-CchHHHHHHHHHHHhhcccccc
Q 001349 271 HAITSLCMSEILNESEMAVLQIERCWLEAS--MELDIQIMLSKPAVINGFVEILFNS-VDPRVLEATIFLLSELGSRDKS 347 (1094)
Q Consensus 271 ~~i~~L~~s~~l~~~e~a~~~i~~~~~~~~--~~~~~~~~~~~~~v~~~~v~~L~~s-~~~~v~~~av~~L~~l~s~~~~ 347 (1094)
..+..+..++.-.-++.|+..+.+++.... .+..+...++...++..|+.+|... .+.++++.|+..|.+| +.+..
T Consensus 333 ~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayL-S~~~~ 411 (810)
T 3now_A 333 DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYL-TLDAE 411 (810)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHH-TTSHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH-hCCcH
Confidence 334444433332235667777777765332 2222332344456677788888775 3889999999999999 66777
Q ss_pred hhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCCCh------------------------------------HHH
Q 001349 348 VIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPST------------------------------------RTL 387 (1094)
Q Consensus 348 ~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~~------------------------------------~~~ 387 (1094)
++..|+...+.++.|+.+|+++ ...|+.+|.+|.... ..+
T Consensus 412 vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~V 491 (810)
T 3now_A 412 CKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVL 491 (810)
T ss_dssp HHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHH
Confidence 8889998788999999999987 578999999996532 233
Q ss_pred HHhhhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHH
Q 001349 388 IEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVG 467 (1094)
Q Consensus 388 ~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 467 (1094)
+.-|.+|+|+.+|.+++..- +..|+.+|.+| +.+.+++..+++.|++|.|+..|++|+.+.|..|+.
T Consensus 492 veaGaVp~LV~LL~s~s~~v-------qe~Aa~aL~NL------A~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~ 558 (810)
T 3now_A 492 ANEGITTALCALAKTESHNS-------QELIARVLNAV------CGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQ 558 (810)
T ss_dssp HHTTHHHHHHHHHTCCCHHH-------HHHHHHHHHHH------HTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHCcCHHHHHHHHcCCCHHH-------HHHHHHHHHHH------cCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHH
Confidence 44456699999999865321 55666667777 445679999999999999999999999999999999
Q ss_pred HHHHHhhccCcchhh--HhhhcCchhHHHHHHhcCC-chhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHH
Q 001349 468 ILLRCMQEDGKCRNS--IADKAELAPVMESFMAASD-GERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLV 544 (1094)
Q Consensus 468 ~l~~~~~~~~~~r~~--~~~~~~~~~~~~l~~~~~~-~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~ 544 (1094)
.|.+++.......-+ ....+.++||++||.+... ..++.|+..|..|...+ .+..+.|-++|.++. |+.
T Consensus 559 AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~-----d~~~~~Ii~aG~l~~---Lv~ 630 (810)
T 3now_A 559 ALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMN-----ESVRQRIIKEQGVSK---IEY 630 (810)
T ss_dssp HHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-----HHHHHHHHHTTHHHH---HHH
T ss_pred HHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCC-----HHHHHHHHHcCCHHH---HHH
Confidence 998765543221111 0123589999999986533 44567888888887763 344455667787766 777
Q ss_pred HHhhcCCccchhHHHHHHhhhcccCCCCCCccH--HHHHHHHHHHhhcCCChHHHHHHHHHHHhccc
Q 001349 545 YLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYR--EEAIDTLISCLRNSDYPAAQLAAAKTIVSLQG 609 (1094)
Q Consensus 545 ~l~~~~~~~~~~~a~~l~~l~~~~~~~~~~~~r--eea~~~~~~~l~~~~~~~~~~~~~~~~~~l~g 609 (1094)
+|.+..+.-+--++.+|.+|-.-.+.+. .+- .+++..|+..|... ...+|..|+.||.+|+.
T Consensus 631 LL~s~~~~Vq~~A~~~L~NLa~~~~~~~--~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALanLt~ 694 (810)
T 3now_A 631 YLMEDHLYLTRAAAQCLCNLVMSEDVIK--MFEGNNDRVKFLALLCEDE-DEETATACAGALAIITS 694 (810)
T ss_dssp HHHSCCTTHHHHHHHHHHHHTTSHHHHH--HHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHhCChHHHH--HHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhC
Confidence 7777777777778888888866322221 222 25888898888775 45789999999999874
No 217
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.28 E-value=1.1e-12 Score=128.13 Aligned_cols=63 Identities=29% Similarity=0.581 Sum_probs=53.3
Q ss_pred ceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHHHH
Q 001349 163 DFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQE 229 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~~ 229 (1094)
++.||||++.|.+||+++|||+||+.||..|+.. ...||.||+.+... . +|..+...|+.+..
T Consensus 53 ~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~--~-~~~~~~~~i~~~~~ 115 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSK--T-YSLVLDNCINKMVN 115 (138)
T ss_dssp HSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCCE--E-ECHHHHHHHHHHHT
T ss_pred cCCCcccCcccCCceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCCC--C-CccchhHHHHHHHH
Confidence 7899999999999999999999999999999987 55799999988643 2 46677777776653
No 218
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.28 E-value=2.3e-10 Score=128.95 Aligned_cols=234 Identities=12% Similarity=0.132 Sum_probs=159.7
Q ss_pred CcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEE
Q 001349 814 GKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHC 891 (1094)
Q Consensus 814 ~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~ 891 (1094)
..|.++.|+++ .++..+.++.++.| .+ .....+..+...+.+++|+++|++++++..++.|.+||..+++...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~ 80 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TA--EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR 80 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---EC--EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE
T ss_pred cccceeeecCCccceeEEeecccCccc---cc--ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEE
Confidence 44667778875 55666788999999 33 4566677788888999999999988888899999999999876443
Q ss_pred EEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcC----CeEEEEECCCCce
Q 001349 892 VQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQD----GAIQEIDLATGTF 967 (1094)
Q Consensus 892 ~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~D----g~I~iwDl~~~~~ 967 (1094)
... .....+.++. ++++|+. +++...+ +.|.+||..++..
T Consensus 81 ~~~-~~~~~~~~i~-------~~~dg~l----------------------------~v~~~~~~~~~~~i~~~d~~~~~~ 124 (333)
T 2dg1_A 81 PFV-SHKANPAAIK-------IHKDGRL----------------------------FVCYLGDFKSTGGIFAATENGDNL 124 (333)
T ss_dssp EEE-CSSSSEEEEE-------ECTTSCE----------------------------EEEECTTSSSCCEEEEECTTSCSC
T ss_pred Eee-CCCCCcceEE-------ECCCCcE----------------------------EEEeCCCCCCCceEEEEeCCCCEE
Confidence 321 2234455554 6666653 2233333 5899999888765
Q ss_pred eEEeccceeecCCCCCeEEEEEeCCccEEEEEECC-----CCEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEE-
Q 001349 968 ATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLD-----GAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLG- 1039 (1094)
Q Consensus 968 ~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~D-----g~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sg- 1039 (1094)
...... ..+...+..+.+++++.+.++...+ ...|..||..+++......+...+..++|+|+ .++.+
T Consensus 125 ~~~~~~----~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~ 200 (333)
T 2dg1_A 125 QDIIED----LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTE 200 (333)
T ss_dssp EEEECS----SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEE
T ss_pred EEEEcc----CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEe
Confidence 422211 1234578999999999887776431 12577777665554433334456789999998 45554
Q ss_pred EcCCeEEEEECCC-CcEEEEe-------cccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1040 CKGGTVEIWDQKR-QIRIETL-------QTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1040 s~dg~I~vwd~~t-~~~~~~l-------~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
+.++.|++||..+ +..+..+ ..++ ..+..++++++|+++++...++.|.+||.
T Consensus 201 ~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~ 261 (333)
T 2dg1_A 201 TTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK 261 (333)
T ss_dssp GGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred CCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC
Confidence 4678999999864 3322211 0122 46889999999998888878899999985
No 219
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=4.5e-12 Score=105.72 Aligned_cols=47 Identities=28% Similarity=0.638 Sum_probs=41.8
Q ss_pred CCCCCceeccCccccccCcEEcCCcccccHHhHHHHHHh--CCCCCCCC
Q 001349 158 HTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIER--GNSSCPIT 204 (1094)
Q Consensus 158 ~~~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~--~~~~CP~c 204 (1094)
..+.+++.||||++.|.+||+++|||+||+.||.+|+.. +...||.|
T Consensus 15 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 345669999999999999999999999999999999985 35579998
No 220
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.27 E-value=1.4e-10 Score=138.71 Aligned_cols=321 Identities=13% Similarity=0.079 Sum_probs=220.1
Q ss_pred HHHHHHhhhccccchHhHHHHHHHHHHHHHhccc-hHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhccc-cc
Q 001349 269 LKHAITSLCMSEILNESEMAVLQIERCWLEASME-LDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSR-DK 346 (1094)
Q Consensus 269 l~~~i~~L~~s~~l~~~e~a~~~i~~~~~~~~~~-~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~-~~ 346 (1094)
+...|..|.+. ..+.++.|+..|..++....++ ..|...++.|. ||.+| .|.+..+++.|+.+|.+|+.. +.
T Consensus 50 i~~LV~~L~s~-~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~----LV~LL-~s~~~~vq~~Aa~AL~nLa~~~~~ 123 (584)
T 3l6x_A 50 LPEVIAMLGFR-LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPV----LVGLL-DHPKKEVHLGACGALKNISFGRDQ 123 (584)
T ss_dssp HHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH----HHHGG-GCSSHHHHHHHHHHHHHHTSSSCH
T ss_pred HHHHHHHHCCC-CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHH----HHHHH-CCCCHHHHHHHHHHHHHHHccCCH
Confidence 45556666544 3345678888888888755554 44555556665 44444 568899999999999999875 57
Q ss_pred chhhhhccCCCcHHHHHHHHhcC-----hHHHHHHHHhcCCChHHHHHhh--hhHHHHHHHH---hccccc----ccc--
Q 001349 347 SVIHTLTRVESDVERIVALFKKG-----LLEAVVLIDLLRPSTRTLIEMD--MMESLMTVIK---KKEEDF----LKM-- 410 (1094)
Q Consensus 347 ~~~~~i~~~~~~~~~L~~lLk~g-----~~~Aa~~l~~L~~~~~~~~~~~--~~~~Ll~~l~---~~~~~~----~~~-- 410 (1094)
.++..|.. .|+++.|+.+|+++ ...|+.+|++|+..++++..|. .+|+|+++|- +|..+. .+.
T Consensus 124 ~nk~~I~~-~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~ 202 (584)
T 3l6x_A 124 DNKIAIKN-CDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRH 202 (584)
T ss_dssp HHHHHHHH-TTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------C
T ss_pred HHHHHHHH-cCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccc
Confidence 78888875 57999999999984 4677889999999888887774 3499999873 221110 000
Q ss_pred cc--CchhhHHHHHHHHhcCCcccccc-cchhhhccchh-HHHHHHhhhc------ccHHHHHHHHHHHHHHhhc-----
Q 001349 411 CL--KPKSVSVLLLGQMIGDSEESIVS-SIANTIVSSKV-FESVISSLEA------EWAEERIAAVGILLRCMQE----- 475 (1094)
Q Consensus 411 ~~--~~~~aa~~~l~~l~~~~~~~~~~-~~~~~~~~~~~-~~~l~~~l~~------~~~~~~~~~~~~l~~~~~~----- 475 (1094)
.. .-...|...|.+| +... +++.+|+..+| ++.||..++. .+.+..++|+.+|.++.-.
T Consensus 203 ~~d~~V~~nAa~~L~NL------s~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~ 276 (584)
T 3l6x_A 203 IEWESVLTNTAGCLRNV------SSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREI 276 (584)
T ss_dssp CCCHHHHHHHHHHHHHH------TSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHS
T ss_pred cccHHHHHHHHHHHHHH------hcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccc
Confidence 00 1123455556666 3333 45888887555 5899999985 3567788898888553211
Q ss_pred --------------------cCcchhhHhhhcCchhHHHHHHh-cCCchhHHHHHHHHHHHhccccchhHHHHHHhhhcC
Q 001349 476 --------------------DGKCRNSIADKAELAPVMESFMA-ASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEG 534 (1094)
Q Consensus 476 --------------------~~~~r~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~ 534 (1094)
+...-..+.+...+++++.||+. .+...++.|+.+|.+|...+ ......+...|.+++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~-~~~~~~~~~~v~~~~ 355 (584)
T 3l6x_A 277 PQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGR-WTYGRYIRSALRQEK 355 (584)
T ss_dssp TTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSC-SHHHHHHHHHHTSHH
T ss_pred cchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCC-ccccHHHHHHHHHcC
Confidence 01111222333456678888865 46677888999999997643 222344555677777
Q ss_pred cchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCC-------ChHHHHHHHHHHHhc
Q 001349 535 TYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSD-------YPAAQLAAAKTIVSL 607 (1094)
Q Consensus 535 ~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~~~~~reea~~~~~~~l~~~~-------~~~~~~~~~~~~~~l 607 (1094)
+++. |+.+|++..++-+--++.+|-.|..- +........+++..||..|.+++ ...++..|+.+|.|+
T Consensus 356 glp~---Lv~LL~s~~~~v~~~A~~aL~nLs~~--~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL 430 (584)
T 3l6x_A 356 ALSA---IADLLTNEHERVVKAASGALRNLAVD--ARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEV 430 (584)
T ss_dssp HHHH---HHHGGGCSCHHHHHHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHH
T ss_pred cHHH---HHHHHcCCCHHHHHHHHHHHHHHhCC--hhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHH
Confidence 7666 88899988888888899999998863 33344558999999999999875 235677888999887
Q ss_pred c
Q 001349 608 Q 608 (1094)
Q Consensus 608 ~ 608 (1094)
.
T Consensus 431 ~ 431 (584)
T 3l6x_A 431 I 431 (584)
T ss_dssp H
T ss_pred h
Confidence 5
No 221
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.27 E-value=7.2e-09 Score=119.12 Aligned_cols=263 Identities=10% Similarity=-0.034 Sum_probs=162.7
Q ss_pred ccCcEEEEeeC--CC---CeEEEeCCcc--eeecccCCCcEEEEEEeCC--EEEEEE----------CCCeEEEEecCCC
Q 001349 783 FEMVKVLSNGH--DS---SADFWNHREL--VHVDSSENGKVLSIACFRD--KIFSGH----------SDGTIKVWTGRGS 843 (1094)
Q Consensus 783 ~d~~~l~s~s~--dg---~I~vWd~~~~--~~~~~~h~~~V~~l~fspd--~LaSgs----------~Dg~I~vWd~~t~ 843 (1094)
+++.+++.... .+ +|.+||..+. ...+.....+ .++|+|| +++.+. .+++|.+||..+.
T Consensus 30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~ 107 (373)
T 2mad_H 30 ADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF 107 (373)
T ss_pred CCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC
Confidence 56776655543 22 7899998743 2233222233 9999997 666654 3688999999887
Q ss_pred cceeEEEeccc-------CCCeEEEEEecCCCEEEEEeC--CCcEEEEECCCCceEEEEe-cccCccceeeeecCceEEE
Q 001349 844 ILHLIQQIREH-------TKAVTGLAILQSGEMLYSGSL--DKTARVWSIGNEEIHCVQV-HDIKDQIQNLAVSNSILCF 913 (1094)
Q Consensus 844 ~~~~~~~l~~H-------~~~V~sv~fspdg~~LaSgs~--DgtI~vWdi~~~~~~~~~~-~~~~~~V~~v~~~~~~~~f 913 (1094)
+.+.++.-. ...-..+.|+|||++|+++.. +++|.++| .+++.. .. ...... + .+
T Consensus 108 --~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~--~~~i~~~~~---~-------~~ 172 (373)
T 2mad_H 108 --LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSD--DQLLSSPTC---Y-------HI 172 (373)
T ss_pred --cEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEE--eEEcCCCce---E-------EE
Confidence 555554321 123457999999999999874 57899999 887532 22 211111 1 14
Q ss_pred eeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCe-EEEEEeCC
Q 001349 914 IPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPV-HALQVHNG 992 (1094)
Q Consensus 914 spdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V-~sl~fs~~ 992 (1094)
.|++.. .+++.+.||.+.+||. +++..........+ ....++ ....+.++
T Consensus 173 ~~~~~~---------------------------~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~-~~~~p~~~~~~~~~~ 223 (373)
T 2mad_H 173 HPGAPS---------------------------TFYLLCAQGGLAKTDH-AGGAAGAGLVGAML-TAAQNLLTQPAQANK 223 (373)
T ss_pred EeCCCc---------------------------eEEEEcCCCCEEEEEC-CCcEEEEEeccccc-cCCcceeecceeEec
Confidence 444432 3556678899999999 77765221100001 111121 22344443
Q ss_pred ccEEEEEECCCCEEEEEECCCCe--EEEEecC-----------CCCEEEEEEeCC--EEEEEEc----------CCeEEE
Q 001349 993 LVYTASTSLDGAAVKMWSTSNYN--MVGSLPT-----------LSEVRAMVVSSE--LVYLGCK----------GGTVEI 1047 (1094)
Q Consensus 993 ~~~las~s~Dg~~I~iwd~~~~~--~~~~~~~-----------~~~v~~l~~spd--~l~sgs~----------dg~I~v 1047 (1094)
+..++..+.++ .+.+.|+.++. .+..+.. ......+.+++| .++++.. ++.|.+
T Consensus 224 ~~~~~~~~~~~-~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~V 302 (373)
T 2mad_H 224 SGRIVWPVYSG-KILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTS 302 (373)
T ss_pred CCEEEEEcCCc-eEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEE
Confidence 32222222344 89999987542 2233321 223444778887 5665543 368999
Q ss_pred EECCCCcEEEEecccCCcceEEEEEcCCCC-EEEEEe-CCCcEEEEeCC
Q 001349 1048 WDQKRQIRIETLQTGTSGKVQCMALDDNEE-FLVIGT-SDGRIQAWGLS 1094 (1094)
Q Consensus 1048 wd~~t~~~~~~l~~~h~~~I~~l~~Spdg~-~L~sgs-~DG~I~iWdls 1094 (1094)
+|..+++.+.++..++ ...+++|+|||+ .++++. .++.|.+||+.
T Consensus 303 ID~~t~~vv~~i~~g~--~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~ 349 (373)
T 2mad_H 303 VTGLVGQTSSQISLGH--DVDAISVAQDGGPDLYALSAGTEVLHIYDAG 349 (373)
T ss_pred EECCCCEEEEEEECCC--CcCeEEECCCCCeEEEEEcCCCCeEEEEECC
Confidence 9999999999996443 689999999999 788877 58999999973
No 222
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.27 E-value=1.1e-12 Score=123.58 Aligned_cols=67 Identities=16% Similarity=0.457 Sum_probs=58.7
Q ss_pred CceeccCccccccCcEEcCCcccccHHhHHHHHHhCC--CCCCCCCcCCCCCCCCChhHHHHHHHHHHHH
Q 001349 162 KDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGN--SSCPITRQKLSSTKLPKTNYVLKRLIASWQE 229 (1094)
Q Consensus 162 ~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~--~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~~ 229 (1094)
+++.||||++.|.+|++++|||+||+.||..|+.... ..||.||..+....+. +|..+.++++.+..
T Consensus 20 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~-~~~~l~~~~~~~~~ 88 (112)
T 1jm7_A 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQ-ESTRFSQLVEELLK 88 (112)
T ss_dssp HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCB-CCCSSSHHHHHHHH
T ss_pred CCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcC-ccHHHHHHHHHHHH
Confidence 3789999999999999999999999999999998632 4799999999988886 88888777777764
No 223
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.27 E-value=1.4e-10 Score=137.44 Aligned_cols=318 Identities=14% Similarity=0.092 Sum_probs=217.0
Q ss_pred HHHHHhhhccccchHhHHHHHHHHHHHHHhccch-HHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccch
Q 001349 270 KHAITSLCMSEILNESEMAVLQIERCWLEASMEL-DIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSV 348 (1094)
Q Consensus 270 ~~~i~~L~~s~~l~~~e~a~~~i~~~~~~~~~~~-~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~ 348 (1094)
...+..|.+. ..+.++.|+..++.++.....++ .+...++.|. ++++|. +.++.+++.|+..|.+|+..++.+
T Consensus 5 ~~lv~~L~s~-~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~----Lv~lL~-s~~~~~~~~A~~aL~nLa~~~~~~ 78 (457)
T 1xm9_A 5 PKAVQYLSSQ-DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICK----LVDLLR-SPNQNVQQAAAGALRNLVFRSTTN 78 (457)
T ss_dssp HHHHHHHHSS-CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHH----HHHHTT-SSCHHHHHHHHHHHHHHHSSCHHH
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHH----HHHHHc-CCCHHHHHHHHHHHHHHhcCCHHH
Confidence 3445555543 33557888888888885444444 5555555544 555544 678899999999999998877788
Q ss_pred hhhhccCCCcHHHHHHHHh-cC----hHHHHHHHHhcCCChHH---HHHhhhhHHHHHHHHh--------cccccccccc
Q 001349 349 IHTLTRVESDVERIVALFK-KG----LLEAVVLIDLLRPSTRT---LIEMDMMESLMTVIKK--------KEEDFLKMCL 412 (1094)
Q Consensus 349 ~~~i~~~~~~~~~L~~lLk-~g----~~~Aa~~l~~L~~~~~~---~~~~~~~~~Ll~~l~~--------~~~~~~~~~~ 412 (1094)
+..|.+ .|+++.|+.+|+ ++ ..+|+.+|++|+..+++ +.. +.+|+|+.+|.. ...+ .+-..
T Consensus 79 k~~i~~-~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~-~~e~~ 155 (457)
T 1xm9_A 79 KLETRR-QNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNM-SREVV 155 (457)
T ss_dssp HHHHHH-TTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC----------CC
T ss_pred HHHHHH-cCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccch-hcccc
Confidence 888875 479999999998 76 67888999999665544 445 777999999942 1100 00000
Q ss_pred Cc--hhhHHHHHHHHhcCCcccccccchhhhccc-hhHHHHHHhhhcc------cHHHHHHHHHHHHHHhh---------
Q 001349 413 KP--KSVSVLLLGQMIGDSEESIVSSIANTIVSS-KVFESVISSLEAE------WAEERIAAVGILLRCMQ--------- 474 (1094)
Q Consensus 413 ~~--~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~------~~~~~~~~~~~l~~~~~--------- 474 (1094)
.+ ...|...|.+| +.+++++..+++. |+++.|+..++.+ +.+..+.++.+|..+.-
T Consensus 156 ~~~v~~~a~~aL~nL------s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~ 229 (457)
T 1xm9_A 156 DPEVFFNATGCLRNL------SSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTR 229 (457)
T ss_dssp CHHHHHHHHHHHHHH------TTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCH
T ss_pred cHHHHHHHHHHHHHH------ccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcch
Confidence 11 12455567666 2336889999997 9999999999863 33445666666544320
Q ss_pred -----------------------------------------ccCcchhhHhhhcCchhHHHHHHhc-CCchhHHHHHHHH
Q 001349 475 -----------------------------------------EDGKCRNSIADKAELAPVMESFMAA-SDGERFEIVCFLS 512 (1094)
Q Consensus 475 -----------------------------------------~~~~~r~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~l~ 512 (1094)
.+......+.+.+.+++++.||... +...++.|...|.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~ 309 (457)
T 1xm9_A 230 YRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQ 309 (457)
T ss_dssp HHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred hhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 0111223455566778899988775 4566777899999
Q ss_pred HHHhccccchhHHH-HHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcC
Q 001349 513 ELVKLNRRTFNEQI-LHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNS 591 (1094)
Q Consensus 513 el~~~~r~~~~~~~-l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~~~~~reea~~~~~~~l~~~ 591 (1094)
.|...+... ..++ ...|.+.|.++. |+.+|++...+-+--|+.+|-.|.. +++.....++++|..|++.|..+
T Consensus 310 nl~~~~~~~-~~~~~~~~v~~~~~l~~---Lv~LL~~~~~~v~~~A~~aL~nls~--~~~~~~~i~~~~i~~Lv~lL~~~ 383 (457)
T 1xm9_A 310 NLTASKGLM-SSGMSQLIGLKEKGLPQ---IARLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTRLLTSH 383 (457)
T ss_dssp HHTTCSSSH-HHHHHHHHHTTSCCHHH---HHHHTTCSCHHHHHHHHHHHHHHHT--SGGGHHHHHHHTHHHHHHTTTSC
T ss_pred HhccCcCcc-hHHHHHHHHHHcCCchH---HHHHHhCCCHhHHHHHHHHHHHHhc--CHHHHHHHHHhhhHHHHHhccCC
Confidence 987654322 2233 345667888776 8889988888777788888888865 44444555789999999999988
Q ss_pred CC-----hHHHHHHHHHHHhcc
Q 001349 592 DY-----PAAQLAAAKTIVSLQ 608 (1094)
Q Consensus 592 ~~-----~~~~~~~~~~~~~l~ 608 (1094)
+. ..++..++.+|.++.
T Consensus 384 ~~~~~~~~~v~~~~l~~l~ni~ 405 (457)
T 1xm9_A 384 TGNTSNSEDILSSACYTVRNLM 405 (457)
T ss_dssp CSCSTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHH
Confidence 65 246777888888864
No 224
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.26 E-value=1.1e-09 Score=124.96 Aligned_cols=284 Identities=13% Similarity=0.114 Sum_probs=181.5
Q ss_pred cccCcEEEEeeC-----CCCeEEEeCCc--ceeecccCCCcEEEEEEeCC--EEEEEE----------CCCeEEEEecCC
Q 001349 782 AFEMVKVLSNGH-----DSSADFWNHRE--LVHVDSSENGKVLSIACFRD--KIFSGH----------SDGTIKVWTGRG 842 (1094)
Q Consensus 782 ~~d~~~l~s~s~-----dg~I~vWd~~~--~~~~~~~h~~~V~~l~fspd--~LaSgs----------~Dg~I~vWd~~t 842 (1094)
.+++.+++.... ++.|.+.|..+ .+........+ . ++++|| +++.++ .++.|.+||..+
T Consensus 41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t 118 (386)
T 3sjl_D 41 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT 118 (386)
T ss_dssp CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred CCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCC
Confidence 467877666644 67899999873 33333333334 4 999997 454443 468899999999
Q ss_pred CcceeEEEeccc-------CCCeEEEEEecCCCEEEEEeC--CCcEEEEECCCCceEEEEecccCccceeee-ecC-ceE
Q 001349 843 SILHLIQQIREH-------TKAVTGLAILQSGEMLYSGSL--DKTARVWSIGNEEIHCVQVHDIKDQIQNLA-VSN-SIL 911 (1094)
Q Consensus 843 ~~~~~~~~l~~H-------~~~V~sv~fspdg~~LaSgs~--DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~-~~~-~~~ 911 (1094)
+ +.+.++.-. ...-..+.|+|||++++++.. +++|.++|+.+++.. ........ ..+. ... ...
T Consensus 119 ~--~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv--~tI~v~g~-~~~~P~g~~~~~ 193 (386)
T 3sjl_D 119 L--LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFK--RMLDVPDC-YHIFPTAPDTFF 193 (386)
T ss_dssp C--CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEE--EEEECCSE-EEEEEEETTEEE
T ss_pred C--eEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEE--EEEECCCc-ceeecCCCceeE
Confidence 8 566665421 124567999999999998864 689999999998632 22222211 1110 000 123
Q ss_pred EEeeCCCeEEEEEeC-CeEE-----EEcCCC-Cce-EEEEe--CCEEEEEEcCCeEEEEECCCCceeEEeccceee----
Q 001349 912 CFIPQGAGIKVHLRN-GKTK-----LLNSSK-YPK-CLALV--QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKL---- 977 (1094)
Q Consensus 912 ~fspdg~~l~~~~~~-g~i~-----l~~~~~-~v~-~l~~s--~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~---- 977 (1094)
.+++||+.+.+.... +.+. +++... .+. ...|. +++++..+.+|.|.+.|..++....... ...+
T Consensus 194 ~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~-~~~~~~~~ 272 (386)
T 3sjl_D 194 MHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPA-VEALTEAE 272 (386)
T ss_dssp EEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCC-EESSCHHH
T ss_pred EECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecc-eecccccc
Confidence 578888887777654 5542 122111 111 12443 5777778889999999998765321100 0000
Q ss_pred --cC-CCCCeEEEEEeCCccEEEEEEC---------CCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC---EEEEEE-c
Q 001349 978 --LG-KANPVHALQVHNGLVYTASTSL---------DGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE---LVYLGC-K 1041 (1094)
Q Consensus 978 --~~-h~~~V~sl~fs~~~~~las~s~---------Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd---~l~sgs-~ 1041 (1094)
.+ .......+++++++..+..... .++.|.++|+.+++.+.++.-...+.++++++| ++++.. .
T Consensus 273 ~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~ 352 (386)
T 3sjl_D 273 RADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTG 352 (386)
T ss_dssp HHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETT
T ss_pred ccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCC
Confidence 00 1122335677876665555432 124899999999999999987778899999998 566654 4
Q ss_pred CCeEEEEECCCCcEEEEecccCCcceEEEEEcCC
Q 001349 1042 GGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDN 1075 (1094)
Q Consensus 1042 dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spd 1075 (1094)
++.|.|+|..+++.+.++.. .+.-+.+.+++|
T Consensus 353 ~~~VsViD~~t~k~~~~i~~--~~~p~~l~~s~d 384 (386)
T 3sjl_D 353 DKTLYIHDAESGEELRSVNQ--LGHGPQVITTAD 384 (386)
T ss_dssp TTEEEEEETTTCCEEEEECC--CCSSCCEEEECC
T ss_pred CCeEEEEECCCCcEEEEecC--CCCCceeEECCc
Confidence 89999999999999999953 334566777766
No 225
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.26 E-value=1.3e-12 Score=123.73 Aligned_cols=71 Identities=24% Similarity=0.309 Sum_probs=60.6
Q ss_pred CCCceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHHHHh
Q 001349 160 PPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQ 230 (1094)
Q Consensus 160 ~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~~~ 230 (1094)
+++++.||||+++|.+||+++|||+||+.||.+|+..+...||.||..+....+..++..+.+++..+.-.
T Consensus 20 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~v~ 90 (116)
T 1rmd_A 20 FVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSLMVK 90 (116)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHCEEE
T ss_pred ccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHhcCC
Confidence 34589999999999999999999999999999999986668999999998877754777787777665543
No 226
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.24 E-value=5.7e-11 Score=142.87 Aligned_cols=316 Identities=10% Similarity=0.074 Sum_probs=228.2
Q ss_pred HHHHHHhhhccccchHhHHHHHHHHHHHHHhccch---HHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccc
Q 001349 269 LKHAITSLCMSEILNESEMAVLQIERCWLEASMEL---DIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRD 345 (1094)
Q Consensus 269 l~~~i~~L~~s~~l~~~e~a~~~i~~~~~~~~~~~---~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~ 345 (1094)
++++|..+.+ +..+.+.+|+..+|++-... .|+ .+..+| ++.-||++|-.+.++.++..|..+|.++.+.+
T Consensus 59 i~~~v~~l~s-~d~~~q~~a~~~~rklls~e-~~ppi~~ii~~G----~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~ 132 (510)
T 3ul1_B 59 VEDIVKGINS-NNLESQLQATQAARKLLSRE-KQPPIDNIIRAG----LIPKFVSFLGKTDCSPIQFESAWALTNIASGT 132 (510)
T ss_dssp HHHHHHHHTS-SCHHHHHHHHHHHHHHHTCS-SCCCHHHHHHTT----HHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHhcCC-CCchHHHHHHCC----CHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC
Confidence 4566777754 44566888999998875332 233 333333 44447777777777899999999999998888
Q ss_pred cchhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCCC-hHHH---HHhhhhHHHHHHHHhccccccccccCchhh
Q 001349 346 KSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPS-TRTL---IEMDMMESLMTVIKKKEEDFLKMCLKPKSV 417 (1094)
Q Consensus 346 ~~~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~-~~~~---~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~a 417 (1094)
...++.|+. .|+++.|+.+|+++ ...|+.+|.+|... ++.. ..-+.+++|+.+|........ ...-...
T Consensus 133 ~e~~~~vv~-~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~--~~~~~~~ 209 (510)
T 3ul1_B 133 SEQTKAVVD-GGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTL--ACGYLRN 209 (510)
T ss_dssp HHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGS--CHHHHHH
T ss_pred HHHHHHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhh--hHHHHHH
Confidence 878887774 56999999999987 67888899999654 3333 334556999999987532210 0011122
Q ss_pred HHHHHHHHhcCCcccccccchhhh-ccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHH
Q 001349 418 SVLLLGQMIGDSEESIVSSIANTI-VSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESF 496 (1094)
Q Consensus 418 a~~~l~~l~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~ 496 (1094)
+...+.++.. +..+...+ ...+++|.|+..+..++.+.+..|+.+|..+.........++.+.+.++.|+++|
T Consensus 210 a~~~L~nl~~------~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL 283 (510)
T 3ul1_B 210 LTWTLSNLCR------NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL 283 (510)
T ss_dssp HHHHHHHHHC------CCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHhh------cccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhh
Confidence 3334444422 22222222 2357789999999999999999999999888777777778889999999999999
Q ss_pred HhcCCchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCcc
Q 001349 497 MAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIY 576 (1094)
Q Consensus 497 ~~~~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~~~~~ 576 (1094)
.+.+...+..++..|..+...+ ....+.|-+.|.+.. |+.+|++..++-+--+|..|.+|..-.+.....+.
T Consensus 284 ~~~~~~v~~~al~aL~nl~~~~-----~~~~~~i~~~g~l~~---L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~ 355 (510)
T 3ul1_B 284 GATELPIVTPALRAIGNIVTGT-----DEQTQKVIDAGALAV---FPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVV 355 (510)
T ss_dssp TCSCHHHHHHHHHHHHHHTTSC-----HHHHHHHHHTTGGGG---CC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred cCCChhhhhHHHHHHHHhhcCC-----HHHHHHHhhccchHH---HHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 9988888888999999987653 233345556777776 66677777777788899999999764444455566
Q ss_pred HHHHHHHHHHHhhcCCChHHHHHHHHHHHhcc
Q 001349 577 REEAIDTLISCLRNSDYPAAQLAAAKTIVSLQ 608 (1094)
Q Consensus 577 reea~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 608 (1094)
..+.++.|+..|.+++ ..+|..|+.||.|+.
T Consensus 356 ~~g~i~~Lv~lL~~~~-~~v~~~Aa~aL~Nl~ 386 (510)
T 3ul1_B 356 NHGLVPFLVGVLSKAD-FKTQKEAAWAITNYT 386 (510)
T ss_dssp HTTHHHHHHHHHHSSC-HHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHH
Confidence 6788999999998775 467999999999976
No 227
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.24 E-value=1.3e-08 Score=111.85 Aligned_cols=235 Identities=9% Similarity=0.067 Sum_probs=155.7
Q ss_pred cCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 001349 811 SENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE 888 (1094)
Q Consensus 811 ~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~ 888 (1094)
.+...+.++++.++ +.++...++.|.+||.. +.. .......+...+.+++++++|.++++...++.|..||.. ++
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~ 88 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKI-TEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GI 88 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCe-EEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-Cc
Confidence 45578999999986 44444457899999988 532 222223456789999999999988887778899999986 33
Q ss_pred eEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEE-EcCCeEEEEECCCCce
Q 001349 889 IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCG-CQDGAIQEIDLATGTF 967 (1094)
Q Consensus 889 ~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sg-s~Dg~I~iwDl~~~~~ 967 (1094)
............+..+. +.++|. ++++ ..++.|..||. ++..
T Consensus 89 ~~~~~~~~~~~~~~~i~-------~~~~g~-----------------------------l~v~~~~~~~i~~~d~-~g~~ 131 (299)
T 2z2n_A 89 IKEYTLPNPDSAPYGIT-------EGPNGD-----------------------------IWFTEMNGNRIGRITD-DGKI 131 (299)
T ss_dssp EEEEECSSTTCCEEEEE-------ECTTSC-----------------------------EEEEETTTTEEEEECT-TCCE
T ss_pred EEEEeCCCcCCCceeeE-------ECCCCC-----------------------------EEEEecCCceEEEECC-CCCE
Confidence 22222111112222222 444443 4443 35678889988 5554
Q ss_pred eEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEE-ec-CCCCEEEEEEeCC-EEEEEE-cCC
Q 001349 968 ATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGS-LP-TLSEVRAMVVSSE-LVYLGC-KGG 1043 (1094)
Q Consensus 968 ~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~-~~-~~~~v~~l~~spd-~l~sgs-~dg 1043 (1094)
... ....+...+..+++++++.+.++...++ .|..||. +++.... .. ....+.+++++++ .++.+. .++
T Consensus 132 ~~~-----~~~~~~~~~~~i~~~~~g~l~v~~~~~~-~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~ 204 (299)
T 2z2n_A 132 REY-----ELPNKGSYPSFITLGSDNALWFTENQNN-AIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGN 204 (299)
T ss_dssp EEE-----ECSSTTCCEEEEEECTTSCEEEEETTTT-EEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTT
T ss_pred EEe-----cCCCCCCCCceEEEcCCCCEEEEeCCCC-EEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCc
Confidence 321 1122345688999999887777665444 8999999 6665442 22 3456889999987 445444 578
Q ss_pred eEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1044 TVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1044 ~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
.|.+||. +++........+...+.+++++++|++.++...++.|..||.
T Consensus 205 ~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 205 KIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp EEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred eEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence 9999999 666443222234567999999999997776667788998874
No 228
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.24 E-value=2.9e-11 Score=137.29 Aligned_cols=263 Identities=14% Similarity=0.140 Sum_probs=194.6
Q ss_pred hHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcC---------------hHHHHHHHHhcCCChH-HHHHh-
Q 001349 328 PRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG---------------LLEAVVLIDLLRPSTR-TLIEM- 390 (1094)
Q Consensus 328 ~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g---------------~~~Aa~~l~~L~~~~~-~~~~~- 390 (1094)
...+..|+.+|.+++ .+..+++.|.. .|.+++|+.+|+.. ..+|+.+|.+|...+. ++..+
T Consensus 46 ~~~~~~A~~aL~nls-~d~e~R~~i~~-~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~ 123 (354)
T 3nmw_A 46 EHQICPAVCVLMKLS-FDEEHRHAMNE-LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC 123 (354)
T ss_dssp GGTHHHHHHHHHHHH-TSHHHHHHHHH-TTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHc-CCHHHHHHHHH-cCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 344668899999995 45667777774 56999999999521 4689999999986554 66555
Q ss_pred --hh-hHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhh-hcccHHHHHHHH
Q 001349 391 --DM-MESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSL-EAEWAEERIAAV 466 (1094)
Q Consensus 391 --~~-~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~~~~~~ 466 (1094)
+. +|+||.+|++++.+. +..|...|..|-.. .+..++..|++.|+||.|++.| +.++.+.+..|+
T Consensus 124 ~~~GaIp~LV~LL~s~~~~v-------~~~A~~aL~nLs~~----~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~ 192 (354)
T 3nmw_A 124 SMKGCMRALVAQLKSESEDL-------QQVIASVLRNLSWR----ADVNSKKTLREVGSVKALMECALEVKKESTLKSVL 192 (354)
T ss_dssp HCHHHHHHHHHGGGCSCHHH-------HHHHHHHHHHHHTT----CCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HcCCcHHHHHHHHCCCCHHH-------HHHHHHHHHHHhcc----CCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHH
Confidence 34 699999999764332 45566667777221 2356889999999999999975 678888898888
Q ss_pred HHHHHHhhccCcchhhHh-hhcCchhHHHHHHhcCCc----hhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHH
Q 001349 467 GILLRCMQEDGKCRNSIA-DKAELAPVMESFMAASDG----ERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHT 541 (1094)
Q Consensus 467 ~~l~~~~~~~~~~r~~~~-~~~~~~~~~~l~~~~~~~----~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~ 541 (1094)
.+|..+...+...|..+. ..+.+++|+++|++.++. .+..|...|..|...= +...+..+.|.+.|.+..
T Consensus 193 ~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~--a~~~~~~~~i~~~g~i~~--- 267 (354)
T 3nmw_A 193 SALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI--ATNEDHRQILRENNCLQT--- 267 (354)
T ss_dssp HHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHTTTHHHH---
T ss_pred HHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhc--cCCHHHHHHHHHcCCHHH---
Confidence 888776553445566666 799999999999887654 5677788888775410 012334456777777666
Q ss_pred HHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhccc
Q 001349 542 LLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQG 609 (1094)
Q Consensus 542 ~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~~~~~reea~~~~~~~l~~~~~~~~~~~~~~~~~~l~g 609 (1094)
|+..|++...+-+--++..|.+|..-.+..+.-+.++++++.|++.|++++ ..+|+.|+.||.+|.-
T Consensus 268 Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~-~~i~~~A~~aL~nL~~ 334 (354)
T 3nmw_A 268 LLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKH-KMIAMGSAAALRNLMA 334 (354)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSS-HHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHc
Confidence 899999888888888999999997532333445668899999999998764 4679999999999873
No 229
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.23 E-value=3.6e-11 Score=136.54 Aligned_cols=203 Identities=14% Similarity=0.072 Sum_probs=153.2
Q ss_pred chHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCCC--hHHHHHh---hhhHHHH
Q 001349 327 DPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPS--TRTLIEM---DMMESLM 397 (1094)
Q Consensus 327 ~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~--~~~~~~~---~~~~~Ll 397 (1094)
+..+++.|..+|.+|...+..++..|...+|.++.|+.+|+++ ...|+.+|.+|... ++++..+ +.+|+||
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv 176 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 176 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHH
Confidence 4678999999999997666667777766677899999999987 56788899999763 5666555 4559999
Q ss_pred HHHHhccccccccccCchhhHHHHHHHHhcCCcccc-cccchhhhc-cchhHHHHHHhhhcccH----HHHHHHHHHHHH
Q 001349 398 TVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESI-VSSIANTIV-SSKVFESVISSLEAEWA----EERIAAVGILLR 471 (1094)
Q Consensus 398 ~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~-~~~~~~~~~-~~~~~~~l~~~l~~~~~----~~~~~~~~~l~~ 471 (1094)
++|....+.. -+..|...|..| +. +.+++.+|+ ..|+|+.|++.|..++. +-+..|+.+|.+
T Consensus 177 ~lL~~~~~~~------~~~~A~~aL~nL------s~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~n 244 (354)
T 3nmw_A 177 ECALEVKKES------TLKSVLSALWNL------SAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRN 244 (354)
T ss_dssp HHHHHCCCHH------HHHHHHHHHHHH------HTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHH
T ss_pred HHHhcCCCHH------HHHHHHHHHHHH------HccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHH
Confidence 9875532221 134455556666 33 446778888 89999999999997654 467778887766
Q ss_pred Hhh---ccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhh
Q 001349 472 CMQ---EDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQT 548 (1094)
Q Consensus 472 ~~~---~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~ 548 (1094)
+.. .+...|..+.+.+.+++|+++|++++...+..|...|..|... ..+..+.|.+.|.++. |+..|++
T Consensus 245 Ls~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~-----~~~~~~~i~~~G~i~~---Lv~LL~s 316 (354)
T 3nmw_A 245 VSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-----NPKDQEALWDMGAVSM---LKNLIHS 316 (354)
T ss_dssp HHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS-----CHHHHHHHHHTTHHHH---HHTTTTC
T ss_pred HHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCC-----CHHHHHHHHHCCCHHH---HHHHHhC
Confidence 554 4778899999999999999999999999999999999999654 2344566777888776 5555543
Q ss_pred c
Q 001349 549 A 549 (1094)
Q Consensus 549 ~ 549 (1094)
.
T Consensus 317 ~ 317 (354)
T 3nmw_A 317 K 317 (354)
T ss_dssp S
T ss_pred C
Confidence 3
No 230
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.23 E-value=3.9e-12 Score=106.79 Aligned_cols=55 Identities=20% Similarity=0.402 Sum_probs=48.7
Q ss_pred CceeccCccc-cccCc----EEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChh
Q 001349 162 KDFVCPITTH-IFDDP----VTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTN 217 (1094)
Q Consensus 162 ~~~~CpIc~~-~~~dP----v~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN 217 (1094)
+++.||||++ ++.+| ++++|||+||+.||.+|+..+...||.||+.+...++. ++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~-~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFR-VQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCE-EE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccce-ee
Confidence 3789999999 99999 57899999999999999887667899999999888775 55
No 231
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.22 E-value=1e-08 Score=124.09 Aligned_cols=229 Identities=10% Similarity=0.012 Sum_probs=156.9
Q ss_pred EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECC--CCceEEEEecccCccce
Q 001349 825 KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIG--NEEIHCVQVHDIKDQIQ 902 (1094)
Q Consensus 825 ~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~--~~~~~~~~~~~~~~~V~ 902 (1094)
++++...+++|.+||..++ +.+.++.. ...+..+.|+|||+++++++.|+.|.+||+. +++ ............
T Consensus 169 ~~V~~~~~~~V~viD~~t~--~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~--~v~~i~~G~~P~ 243 (567)
T 1qks_A 169 FSVTLRDAGQIALIDGSTY--EIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT--TVAEIKIGSEAR 243 (567)
T ss_dssp EEEEETTTTEEEEEETTTC--CEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC--EEEEEECCSEEE
T ss_pred EEEEeCCCCeEEEEECCCC--eEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCc--EeEEEecCCCCc
Confidence 6777788999999999998 67777753 4467899999999999999999999999996 543 222222222233
Q ss_pred eeeecCceEEEe----eCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEecccee-e
Q 001349 903 NLAVSNSILCFI----PQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRK-L 977 (1094)
Q Consensus 903 ~v~~~~~~~~fs----pdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~-~ 977 (1094)
.+. |+ |||+++ +++...+++|.++|..+.+.+........ .
T Consensus 244 ~ia-------~s~~~~pDGk~l---------------------------~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~ 289 (567)
T 1qks_A 244 SIE-------TSKMEGWEDKYA---------------------------IAGAYWPPQYVIMDGETLEPKKIQSTRGMTY 289 (567)
T ss_dssp EEE-------ECCSTTCTTTEE---------------------------EEEEEETTEEEEEETTTCCEEEEEECCEECT
T ss_pred eeE-------EccccCCCCCEE---------------------------EEEEccCCeEEEEECCCCcEEEEEecccccc
Confidence 444 88 688874 33445568899999988887754432110 1
Q ss_pred cC---CC-CCeEEEEEeCCccEEEEEECCCCEEEEEECCCCe--EEEEecCCCCEEEEEEeCC--EEEEEE-cCCeEEEE
Q 001349 978 LG---KA-NPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN--MVGSLPTLSEVRAMVVSSE--LVYLGC-KGGTVEIW 1048 (1094)
Q Consensus 978 ~~---h~-~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~--~~~~~~~~~~v~~l~~spd--~l~sgs-~dg~I~vw 1048 (1094)
.+ |. ..+..+.+++++..++....+.+.|.++|..+.. .+..+........+.|+|+ +++++. .++.|.+|
T Consensus 290 ~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~Vi 369 (567)
T 1qks_A 290 DEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVI 369 (567)
T ss_dssp TTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEE
T ss_pred ccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEE
Confidence 11 22 2577888887755555554555699999998753 3344445667788999998 555554 67999999
Q ss_pred ECCCCcEEEEecc----cCCcceEEEEEcCCCCEE-EEEe-CCCcEEEEeC
Q 001349 1049 DQKRQIRIETLQT----GTSGKVQCMALDDNEEFL-VIGT-SDGRIQAWGL 1093 (1094)
Q Consensus 1049 d~~t~~~~~~l~~----~h~~~I~~l~~Spdg~~L-~sgs-~DG~I~iWdl 1093 (1094)
|..+++.+..+.. .|.+.-..+ ++|++..+ +++. .+++|.+||.
T Consensus 370 D~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~ 419 (567)
T 1qks_A 370 DTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGT 419 (567)
T ss_dssp ETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEEC
T ss_pred ECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecC
Confidence 9999998887754 243322222 68875444 4543 4689999985
No 232
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.22 E-value=9.7e-13 Score=128.30 Aligned_cols=71 Identities=11% Similarity=0.265 Sum_probs=58.6
Q ss_pred CCCCCceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCC---------CCCCChhHHHHHHHHHHH
Q 001349 158 HTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSS---------TKLPKTNYVLKRLIASWQ 228 (1094)
Q Consensus 158 ~~~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~---------~~~~~pN~~l~~~i~~~~ 228 (1094)
..++++|.||||+++|.+||+++|||+||+.||.+|+..+...||.||..+.. ..++ ||..+++.|.+..
T Consensus 26 ~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~-~d~~~~~~i~~L~ 104 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAF-PDNAARREVESLP 104 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCE-ECHHHHHHHHTSE
T ss_pred ccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhc-ccHHHHHHHcccc
Confidence 35667999999999999999999999999999999998766689999986532 2454 8888888887544
Q ss_pred H
Q 001349 229 E 229 (1094)
Q Consensus 229 ~ 229 (1094)
-
T Consensus 105 v 105 (141)
T 3knv_A 105 A 105 (141)
T ss_dssp E
T ss_pred c
Confidence 3
No 233
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.22 E-value=4.6e-09 Score=116.81 Aligned_cols=251 Identities=7% Similarity=0.028 Sum_probs=148.8
Q ss_pred CCCcEEEEEEeCC--EEEE-------EECCCeEEEEecCCCcceeEEE--ecccCCCeEEEEEecC-CCEEEEEeCCCcE
Q 001349 812 ENGKVLSIACFRD--KIFS-------GHSDGTIKVWTGRGSILHLIQQ--IREHTKAVTGLAILQS-GEMLYSGSLDKTA 879 (1094)
Q Consensus 812 h~~~V~~l~fspd--~LaS-------gs~Dg~I~vWd~~t~~~~~~~~--l~~H~~~V~sv~fspd-g~~LaSgs~DgtI 879 (1094)
.-....+++|+++ ++++ +..++.|.+||..++....+.. ..++...+.+++++++ |+++++.. ++.|
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l 94 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGL 94 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEE
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCE
Confidence 3445688999875 5555 4778999999988874322111 0125577999999999 76555544 4479
Q ss_pred EEEECCCCceEEE-Eeccc---CccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCC
Q 001349 880 RVWSIGNEEIHCV-QVHDI---KDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDG 955 (1094)
Q Consensus 880 ~vWdi~~~~~~~~-~~~~~---~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg 955 (1094)
.+||.. ++...+ ..... ...+..+ ++.++|+..+....++.. ... +.. ......+
T Consensus 95 ~~~d~~-g~~~~~~~~~~~~~~~~~~~~i-------~~d~~g~l~v~~~~~~~~----~~~------~~~---~~~~~~~ 153 (314)
T 1pjx_A 95 LVVQTD-GTFEEIAKKDSEGRRMQGCNDC-------AFDYEGNLWITAPAGEVA----PAD------YTR---SMQEKFG 153 (314)
T ss_dssp EEEETT-SCEEECCSBCTTSCBCBCCCEE-------EECTTSCEEEEECBCBCT----TSC------CCB---TTSSSCE
T ss_pred EEEeCC-CCEEEEEeccCCCccccCCcCE-------EECCCCCEEEEecCcccc----ccc------ccc---cccCCCC
Confidence 999998 654322 11100 0122333 366666532221111000 000 000 0000014
Q ss_pred eEEEEECCCCceeEEeccceeecCCCCCeEEEEEe----CCccEEEEEECCCCEEEEEECC-CCeE-----EEEecCC--
Q 001349 956 AIQEIDLATGTFATIQTGHRKLLGKANPVHALQVH----NGLVYTASTSLDGAAVKMWSTS-NYNM-----VGSLPTL-- 1023 (1094)
Q Consensus 956 ~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs----~~~~~las~s~Dg~~I~iwd~~-~~~~-----~~~~~~~-- 1023 (1094)
.|..||.. ++..... .+......++++ +++..+..+...++.|.+||.. ++.. ...+...
T Consensus 154 ~l~~~~~~-g~~~~~~-------~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~ 225 (314)
T 1pjx_A 154 SIYCFTTD-GQMIQVD-------TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE 225 (314)
T ss_dssp EEEEECTT-SCEEEEE-------EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS
T ss_pred eEEEECCC-CCEEEec-------cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCC
Confidence 56677765 5443211 122346788999 9986554443333489999986 4542 2223222
Q ss_pred CCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEE-EEeCCCcEEEEeC
Q 001349 1024 SEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLV-IGTSDGRIQAWGL 1093 (1094)
Q Consensus 1024 ~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~-sgs~DG~I~iWdl 1093 (1094)
..+..++++++ +.++...++.|.+||..+++.+..+. .+...+.+++|+|+|+.|+ +...++.|..|++
T Consensus 226 ~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~ 297 (314)
T 1pjx_A 226 GGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR-CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW 297 (314)
T ss_dssp CEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE-CSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred CCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe-CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeC
Confidence 56889999987 44444578899999998787766663 4556899999999999554 4555688999886
No 234
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.22 E-value=1.1e-09 Score=137.49 Aligned_cols=240 Identities=9% Similarity=0.016 Sum_probs=156.8
Q ss_pred ccccccccCcEEEEeeCCC-----CeEEEeCCcceee-cccCCCcEEEEEEeCC--EEEEEECCCe--------------
Q 001349 777 KYSPLAFEMVKVLSNGHDS-----SADFWNHRELVHV-DSSENGKVLSIACFRD--KIFSGHSDGT-------------- 834 (1094)
Q Consensus 777 ~~~~~~~d~~~l~s~s~dg-----~I~vWd~~~~~~~-~~~h~~~V~~l~fspd--~LaSgs~Dg~-------------- 834 (1094)
....+++||++++.++.++ .|++||..+.... ...+...+..++|+|| .|+.++.++.
T Consensus 128 ~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~ 207 (710)
T 2xdw_A 128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLH 207 (710)
T ss_dssp EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCC
T ss_pred EEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCC
Confidence 3456888999998776543 8999998743221 1112223678999997 7888877766
Q ss_pred --EEEEecCCCcce--eEEEecccCCCeEEEEEecCCCEEEEEeC-----CCcEEEEECCC------Cc--eEEEEeccc
Q 001349 835 --IKVWTGRGSILH--LIQQIREHTKAVTGLAILQSGEMLYSGSL-----DKTARVWSIGN------EE--IHCVQVHDI 897 (1094)
Q Consensus 835 --I~vWd~~t~~~~--~~~~l~~H~~~V~sv~fspdg~~LaSgs~-----DgtI~vWdi~~------~~--~~~~~~~~~ 897 (1094)
|++|++.++... .+.....|...+..+.|+|||++|+.++. +..|++||+.+ +. ...+.. .
T Consensus 208 ~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~--~ 285 (710)
T 2xdw_A 208 QKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID--N 285 (710)
T ss_dssp CEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC--S
T ss_pred CEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeC--C
Confidence 999999887432 33333346667889999999999988775 56899999976 42 233222 1
Q ss_pred CccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceee
Q 001349 898 KDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKL 977 (1094)
Q Consensus 898 ~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~ 977 (1094)
...+.. .|+|+|..+++.+..+ ..++.|.+||+.++.... ...+
T Consensus 286 ~~~~~~--------~~s~dg~~l~~~s~~~------------------------~~~~~l~~~d~~~~~~~~----~~~l 329 (710)
T 2xdw_A 286 FEGEYD--------YVTNEGTVFTFKTNRH------------------------SPNYRLINIDFTDPEESK----WKVL 329 (710)
T ss_dssp SSSCEE--------EEEEETTEEEEEECTT------------------------CTTCEEEEEETTSCCGGG----CEEE
T ss_pred CCcEEE--------EEeccCCEEEEEECCC------------------------CCCCEEEEEeCCCCCccc----ceec
Confidence 222221 2677777643322110 123479999998764200 0223
Q ss_pred cCCCC--CeEEEEEeCCccEEEEEECCCC-EEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEE-EEE---cCCeEEE
Q 001349 978 LGKAN--PVHALQVHNGLVYTASTSLDGA-AVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVY-LGC---KGGTVEI 1047 (1094)
Q Consensus 978 ~~h~~--~V~sl~fs~~~~~las~s~Dg~-~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~-sgs---~dg~I~v 1047 (1094)
..|.. .+..+.|++++.++++...++. .|.+||+.+++.+..+. +...+..+.++++ .++ +.+ ..++|+.
T Consensus 330 ~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~ 409 (710)
T 2xdw_A 330 VPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYH 409 (710)
T ss_dssp ECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEE
T ss_pred cCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEE
Confidence 33333 5778899877778888777752 46777887787777776 4566888888886 333 333 3478999
Q ss_pred EECCCCc
Q 001349 1048 WDQKRQI 1054 (1094)
Q Consensus 1048 wd~~t~~ 1054 (1094)
||+.+++
T Consensus 410 ~d~~tg~ 416 (710)
T 2xdw_A 410 CDLTKEE 416 (710)
T ss_dssp EETTSSS
T ss_pred EECCCCc
Confidence 9998876
No 235
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.19 E-value=6.5e-12 Score=127.51 Aligned_cols=70 Identities=21% Similarity=0.363 Sum_probs=62.6
Q ss_pred CCCCceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHHHH
Q 001349 159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQE 229 (1094)
Q Consensus 159 ~~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~~ 229 (1094)
.++++|.||||+++|.+||+++|||+||+.||.+|+..+...||.||..+....+. ||..+.+.|.++.-
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~-~~~~~~~~i~~l~v 83 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLF-PDNFAKREILSLMV 83 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCE-ECHHHHHHHHTSEE
T ss_pred CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhh-hhHHHHHHHhhccc
Confidence 56679999999999999999999999999999999987666899999999988887 99999888886543
No 236
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.19 E-value=2.7e-10 Score=133.29 Aligned_cols=258 Identities=15% Similarity=0.148 Sum_probs=192.6
Q ss_pred HHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhc-----------C----hHHHHHHHHhcCCChH-HHHHh---hh-
Q 001349 333 ATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKK-----------G----LLEAVVLIDLLRPSTR-TLIEM---DM- 392 (1094)
Q Consensus 333 ~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~-----------g----~~~Aa~~l~~L~~~~~-~~~~~---~~- 392 (1094)
.|+.+|.++ +.++.++..|.. .|++++|+.+|.. . ..+|+.+|.+|...+. ++..+ +.
T Consensus 167 qAv~aL~nl-s~~~e~R~~i~~-~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~Ga 244 (458)
T 3nmz_A 167 PAVCVLMKL-SFDEEHRHAMNE-LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC 244 (458)
T ss_dssp HHHHHHHHH-TTSHHHHHHHHH-TTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHH
T ss_pred HHHHHHHHh-cCCHHHHHHHHH-CCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCc
Confidence 899999999 556778888874 6799999999952 1 5689999999976554 55444 44
Q ss_pred hHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHh-hhcccHHHHHHHHHHHHH
Q 001349 393 MESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISS-LEAEWAEERIAAVGILLR 471 (1094)
Q Consensus 393 ~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~~~~~~~~l~~ 471 (1094)
+|+|+.+|.+++.+. +..|...|..|-.+ .+..++..|++.|+|+.|++. ++.++.+.+..|+.+|..
T Consensus 245 Ip~LV~LL~s~~~~v-------~~~A~~aL~nLs~~----~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~n 313 (458)
T 3nmz_A 245 MRALVAQLKSESEDL-------QQVIASVLRNLSWR----ADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWN 313 (458)
T ss_dssp HHHHHHGGGCSCHHH-------HHHHHHHHHHHTSS----CCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHH-------HHHHHHHHHHHhcC----CCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 699999999765332 45566667666221 235688999999999999997 567888888888888876
Q ss_pred HhhccCcchhhHh-hhcCchhHHHHHHhcCCc----hhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHH
Q 001349 472 CMQEDGKCRNSIA-DKAELAPVMESFMAASDG----ERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYL 546 (1094)
Q Consensus 472 ~~~~~~~~r~~~~-~~~~~~~~~~l~~~~~~~----~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l 546 (1094)
+...+...+..+. ..+.+++|+++|.+..+. .+..|...|..|...= +...+..+.|.+.|.+.. |+..|
T Consensus 314 Ls~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~--a~~~~~~~~i~~~G~i~~---Lv~LL 388 (458)
T 3nmz_A 314 LSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI--ATNEDHRQILRENNCLQT---LLQHL 388 (458)
T ss_dssp HHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHTTHHHH---HHHHS
T ss_pred HccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcc--cCCHHHHHHHHHcccHHH---HHHHH
Confidence 6553445566666 799999999999987664 5677888888775410 012334566777787776 88899
Q ss_pred hhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhccc
Q 001349 547 QTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQG 609 (1094)
Q Consensus 547 ~~~~~~~~~~~a~~l~~l~~~~~~~~~~~~reea~~~~~~~l~~~~~~~~~~~~~~~~~~l~g 609 (1094)
++...+-+--++..|.+|..-.+..+.-+.++++++.|++.|++++ ..+++.|+.||.||.-
T Consensus 389 ~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~-~~v~~~Aa~AL~nL~~ 450 (458)
T 3nmz_A 389 KSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKH-KMIAMGSAAALRNLMA 450 (458)
T ss_dssp SCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSS-HHHHHHHHHHHHHHHT
T ss_pred cCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHc
Confidence 8888888888999999997532333455668899999999998764 5679999999999874
No 237
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.18 E-value=3e-08 Score=113.86 Aligned_cols=287 Identities=11% Similarity=0.078 Sum_probs=176.3
Q ss_pred cCcEEEEeeCCCCeEEEeCCcc--eeecccC---------CCcE-EEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEe
Q 001349 784 EMVKVLSNGHDSSADFWNHREL--VHVDSSE---------NGKV-LSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQI 851 (1094)
Q Consensus 784 d~~~l~s~s~dg~I~vWd~~~~--~~~~~~h---------~~~V-~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l 851 (1094)
++..++.++.++.|..||..+. ....... ...+ ..+....+.++.++.+|.|..+|..++ +.+...
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG--~~~W~~ 129 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDG--TVAWQT 129 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTC--CEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCC--CEEEEE
Confidence 5667788888899999998632 2222211 2223 445566679999999999999999999 566655
Q ss_pred cccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEE
Q 001349 852 REHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKL 931 (1094)
Q Consensus 852 ~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l 931 (1094)
...........+ .+..++.++.++.|..+|..+|+..-.... ..++....... .. ... +..+.++..++.+..
T Consensus 130 ~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~--~~~~~~~~~~~-~~-~~~-~~~v~~g~~~g~l~~ 202 (376)
T 3q7m_A 130 KVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNL--DMPSLSLRGES-AP-TTA-FGAAVVGGDNGRVSA 202 (376)
T ss_dssp ECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEEC--CC-----CCCC-CC-EEE-TTEEEECCTTTEEEE
T ss_pred eCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeC--CCCceeecCCC-Cc-EEE-CCEEEEEcCCCEEEE
Confidence 443322222222 245788889999999999999863322222 11111000000 00 001 122333333333333
Q ss_pred EcCCC-----------------------CceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEE
Q 001349 932 LNSSK-----------------------YPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQ 988 (1094)
Q Consensus 932 ~~~~~-----------------------~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~ 988 (1094)
++... ........++.+++++.++.+..+|..+|+...... ......+.
T Consensus 203 ~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~--------~~~~~~~~ 274 (376)
T 3q7m_A 203 VLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRE--------LGSVNDFI 274 (376)
T ss_dssp EETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEEC--------CCCEEEEE
T ss_pred EECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeecc--------CCCCCCce
Confidence 33210 001223346789999999999999999998775432 12344555
Q ss_pred EeCCccEEEEEECCCCEEEEEECCCCeEEEEec--CCCCEEEEEEeCCEEEEEEcCCeEEEEECCCCcEEEEecccCCcc
Q 001349 989 VHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP--TLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGK 1066 (1094)
Q Consensus 989 fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~--~~~~v~~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~ 1066 (1094)
...+..+ .++.++ .+..+|..+++...... ....+....+..+.+++++.+|.|++||..+++.+..+.......
T Consensus 275 ~~~~~l~--~~~~~g-~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~ 351 (376)
T 3q7m_A 275 VDGNRIY--LVDQND-RVMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGF 351 (376)
T ss_dssp EETTEEE--EEETTC-CEEEEETTTCCEEEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCB
T ss_pred EECCEEE--EEcCCC-eEEEEECCCCcEEEeecccCCCcccCCEEECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcc
Confidence 5544333 334454 89999999999887776 233344555667899999999999999999999888775322222
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1067 VQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1067 I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
...... .+..|+.++.+|.|..|+
T Consensus 352 ~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 352 QTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp CSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred eeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 222223 256788899999999987
No 238
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=2.8e-11 Score=108.37 Aligned_cols=56 Identities=21% Similarity=0.427 Sum_probs=48.2
Q ss_pred CCCCCCceeccCccccccC----cEEcCCcccccHHhHHHHHHhC--CCCCCCCCcCCCCCC
Q 001349 157 KHTPPKDFVCPITTHIFDD----PVTLETGQTYERRAIQEWIERG--NSSCPITRQKLSSTK 212 (1094)
Q Consensus 157 ~~~~~~~~~CpIc~~~~~d----Pv~~~cGhtfc~~ci~~~~~~~--~~~CP~c~~~~~~~~ 212 (1094)
...+.+++.||||++.|.+ |++++|||+||+.||.+|+... ...||.||+.+....
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 9 LDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70 (88)
T ss_dssp CCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred hhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence 3455668999999999999 9999999999999999999874 357999999876543
No 239
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.17 E-value=8.5e-12 Score=106.79 Aligned_cols=55 Identities=18% Similarity=0.493 Sum_probs=49.2
Q ss_pred CCceeccCccccccCc-------EEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChh
Q 001349 161 PKDFVCPITTHIFDDP-------VTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTN 217 (1094)
Q Consensus 161 ~~~~~CpIc~~~~~dP-------v~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN 217 (1094)
.+++.||||++.|.+| ++++|||+||+.||.+|+... ..||.||+.+....+. ++
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~-~~ 69 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYH-PI 69 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC-SBCTTTCCBCCCCSCC-CC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC-CCCCCCCCccChhhee-ec
Confidence 3489999999999999 889999999999999999874 5899999999988875 55
No 240
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.17 E-value=2.6e-09 Score=120.58 Aligned_cols=217 Identities=10% Similarity=-0.002 Sum_probs=144.9
Q ss_pred CCCeEEEEecCCCcceeEEEec------ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceee
Q 001349 831 SDGTIKVWTGRGSILHLIQQIR------EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNL 904 (1094)
Q Consensus 831 ~Dg~I~vWd~~t~~~~~~~~l~------~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v 904 (1094)
.+++|.+||..++ +....+. ........+.+. +++..++...+++|.+||..+++.... .........+
T Consensus 15 ~~~~l~~~d~~t~--~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~--i~~~~~p~~i 89 (328)
T 3dsm_A 15 SNATLSYYDPATC--EVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGR--ITGFTSPRYI 89 (328)
T ss_dssp CCBEEEEEETTTT--EEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEE--EECCSSEEEE
T ss_pred CCceEEEEECCCC--EEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEE--cCCCCCCcEE
Confidence 3899999999998 4444331 122446778874 455666666789999999999863221 1112223333
Q ss_pred eecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEE-cCCeEEEEECCCCceeEEeccceeecCCCCC
Q 001349 905 AVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGC-QDGAIQEIDLATGTFATIQTGHRKLLGKANP 983 (1094)
Q Consensus 905 ~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs-~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~ 983 (1094)
+ ++++| +++++. .++.|.+||..+++......... ..++...
T Consensus 90 ~-------~~~~g-----------------------------~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~-~~~~~~~ 132 (328)
T 3dsm_A 90 H-------FLSDE-----------------------------KAYVTQIWDYRIFIINPKTYEITGYIECPD-MDMESGS 132 (328)
T ss_dssp E-------EEETT-----------------------------EEEEEEBSCSEEEEEETTTTEEEEEEECTT-CCTTTCB
T ss_pred E-------EeCCC-----------------------------eEEEEECCCCeEEEEECCCCeEEEEEEcCC-ccccCCC
Confidence 3 55555 355555 78999999999988764322110 0011113
Q ss_pred eEEEEEeCCccEEEEEE-CCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC-EEEEEEc-C----------CeEEEEEC
Q 001349 984 VHALQVHNGLVYTASTS-LDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE-LVYLGCK-G----------GTVEIWDQ 1050 (1094)
Q Consensus 984 V~sl~fs~~~~~las~s-~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd-~l~sgs~-d----------g~I~vwd~ 1050 (1094)
...+++. ++.+.++.. .+ +.|.+||..+++.+..+........+.++++ .++.++. + +.|.+||.
T Consensus 133 p~~i~~~-~~~lyv~~~~~~-~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~ 210 (328)
T 3dsm_A 133 TEQMVQY-GKYVYVNCWSYQ-NRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDA 210 (328)
T ss_dssp CCCEEEE-TTEEEEEECTTC-CEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEET
T ss_pred cceEEEE-CCEEEEEcCCCC-CEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEEC
Confidence 4566673 444444443 35 4999999999999888886666778999997 4444443 3 78999999
Q ss_pred CCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1051 KRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1051 ~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
.+++....+..........++|+||+++|+++.. .|.+||.
T Consensus 211 ~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~ 251 (328)
T 3dsm_A 211 ETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPV 251 (328)
T ss_dssp TTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEET
T ss_pred CCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEEC
Confidence 9999887774322346899999999999988765 8999986
No 241
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.17 E-value=3.8e-10 Score=136.40 Aligned_cols=319 Identities=10% Similarity=0.075 Sum_probs=228.4
Q ss_pred HHHHHHhhhccccchHhHHHHHHHHHHHHHhccchHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccch
Q 001349 269 LKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSV 348 (1094)
Q Consensus 269 l~~~i~~L~~s~~l~~~e~a~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~ 348 (1094)
+..++..+.+. ..+.+..|+..++++-... .++-+.. ....+++.-|+++|..+.++.++..|..+|.++.+.+...
T Consensus 78 l~~lv~~l~s~-d~~~q~~a~~~~rklLs~~-~~~~i~~-ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~ 154 (529)
T 3tpo_A 78 VEDIVKGINSN-NLESQLQATQAARKLLSRE-KQPPIDN-IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 154 (529)
T ss_dssp HHHHHHHHTSS-CHHHHHHHHHHHHHHHTSS-SCCCHHH-HHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHHcCC-CCchHHH-HHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 45566666643 4456778888888764322 2222221 1233455557777877778999999999999998887767
Q ss_pred hhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCCC-hHHH---HHhhhhHHHHHHHHhccccccccccCchhhHHH
Q 001349 349 IHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPS-TRTL---IEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVL 420 (1094)
Q Consensus 349 ~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~-~~~~---~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~ 420 (1094)
.+.+. ..|+++.|+.+|+++ ...|+.+|.+|... ++.. ...+.+++|+.+|........ ...-...+..
T Consensus 155 ~~~vv-~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~--~~~~~~~a~~ 231 (529)
T 3tpo_A 155 TKAVV-DGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTL--ACGYLRNLTW 231 (529)
T ss_dssp HHHHH-HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGS--CHHHHHHHHH
T ss_pred HHHHH-HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHh--HHHHHHHHHH
Confidence 77776 457999999999987 67888899999654 4433 344556999999986532210 0011123334
Q ss_pred HHHHHhcCCcccccccchh-hhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhc
Q 001349 421 LLGQMIGDSEESIVSSIAN-TIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAA 499 (1094)
Q Consensus 421 ~l~~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~ 499 (1094)
.|.++.. +..+.. .....+++|.|+..+..++.+.+..|+.+|..+.........++.+.+.+++|+++|.+.
T Consensus 232 ~L~nl~~------~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~ 305 (529)
T 3tpo_A 232 TLSNLCR------NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT 305 (529)
T ss_dssp HHHHHHC------CCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCS
T ss_pred HHHHHHh------cccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCC
Confidence 4544422 222222 223357889999999999999999999999988887778888999999999999999998
Q ss_pred CCchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHH
Q 001349 500 SDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREE 579 (1094)
Q Consensus 500 ~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~~~~~ree 579 (1094)
+...+..++..|..+...+ ......|-+.|.+.. |+.+|++..++-+--++..|.+|..-.+.....+...+
T Consensus 306 ~~~v~~~a~~aL~nl~~~~-----~~~~~~i~~~g~l~~---L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g 377 (529)
T 3tpo_A 306 ELPIVTPALRAIGNIVTGT-----DEQTQKVIDAGALAV---FPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG 377 (529)
T ss_dssp CHHHHHHHHHHHHHHTTSC-----HHHHHHHHHTTGGGG---HHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred ChhHHHHHHHHHHHHHccc-----hHHHHHHhhcccHHH---HHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcC
Confidence 8888888999999987652 333445556777776 77778877777788899999998764333444555667
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHhcc
Q 001349 580 AIDTLISCLRNSDYPAAQLAAAKTIVSLQ 608 (1094)
Q Consensus 580 a~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 608 (1094)
+++.|+..|.+++ ..+|..|+.||.|+.
T Consensus 378 ~i~~Lv~lL~~~~-~~v~~~A~~aL~nl~ 405 (529)
T 3tpo_A 378 LVPFLVGVLSKAD-FKTQKAAAWAITNYT 405 (529)
T ss_dssp HHHHHHHHHHSSC-HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhcCCC-HHHHHHHHHHHHHHH
Confidence 8999999998775 467999999999976
No 242
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.16 E-value=6e-08 Score=106.57 Aligned_cols=263 Identities=8% Similarity=0.044 Sum_probs=167.8
Q ss_pred ccccCcEEEEeeCCCCeEEEeCCcceee--cccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCC
Q 001349 781 LAFEMVKVLSNGHDSSADFWNHRELVHV--DSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTK 856 (1094)
Q Consensus 781 ~~~d~~~l~s~s~dg~I~vWd~~~~~~~--~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~ 856 (1094)
+..++...++...++.|.+|+....... ...+...+.++++.++ +.++...++.|..||.. +.. ....+.....
T Consensus 27 ~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~-~~~~~~~~~~ 104 (300)
T 2qc5_A 27 SSEDGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF-TEYPLPQPDS 104 (300)
T ss_dssp ECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTC
T ss_pred ECCCCCEEEEcCCCCeEEEECCCCceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe-EEecCCCCCC
Confidence 3456776666667889999987722221 2233467999999986 55555557899999988 532 2223333456
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCC
Q 001349 857 AVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSK 936 (1094)
Q Consensus 857 ~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~ 936 (1094)
.+.++++.++|+++++...++.|..||.. ++............+..+. +.++|+
T Consensus 105 ~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~-------~d~~g~------------------ 158 (300)
T 2qc5_A 105 GPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFIT-------LGSDNA------------------ 158 (300)
T ss_dssp CEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEE-------ECTTSS------------------
T ss_pred CCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEE-------ECCCCC------------------
Confidence 78999999999988887778899999987 5433222111112222322 445444
Q ss_pred CceEEEEeCCEEEEEE-cCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCe
Q 001349 937 YPKCLALVQGKVYCGC-QDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN 1015 (1094)
Q Consensus 937 ~v~~l~~s~~~l~sgs-~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~ 1015 (1094)
++++. .++.|..||. +++.... ....+...+..+++++++.+.++.... +.|.+||. ++.
T Consensus 159 -----------l~v~~~~~~~i~~~~~-~g~~~~~-----~~~~~~~~~~~i~~d~~g~l~v~~~~~-~~i~~~~~-~g~ 219 (300)
T 2qc5_A 159 -----------LWFTENQNNSIGRITN-TGKLEEY-----PLPTNAAAPVGITSGNDGALWFVEIMG-NKIGRITT-TGE 219 (300)
T ss_dssp -----------EEEEETTTTEEEEECT-TCCEEEE-----ECSSTTCCEEEEEECTTSSEEEEETTT-TEEEEECT-TCC
T ss_pred -----------EEEEecCCCeEEEECC-CCcEEEe-----eCCCCCCCcceEEECCCCCEEEEccCC-CEEEEEcC-CCc
Confidence 33333 3677888887 5554321 112334568899999888776665444 48999998 554
Q ss_pred EEEE-ec-CCCCEEEEEEeCC-EEEEEE-cCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEE
Q 001349 1016 MVGS-LP-TLSEVRAMVVSSE-LVYLGC-KGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAW 1091 (1094)
Q Consensus 1016 ~~~~-~~-~~~~v~~l~~spd-~l~sgs-~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iW 1091 (1094)
.... +. +...+.+++++++ .++.+. .++.|..||. +++............+.+++++++|.+.++.. + .|..+
T Consensus 220 ~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~ 296 (300)
T 2qc5_A 220 ISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKL 296 (300)
T ss_dssp EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEE
T ss_pred EEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEe
Confidence 4332 22 3567899999987 555555 4689999998 45433221122345689999999998666554 4 66666
Q ss_pred eC
Q 001349 1092 GL 1093 (1094)
Q Consensus 1092 dl 1093 (1094)
|.
T Consensus 297 ~p 298 (300)
T 2qc5_A 297 NL 298 (300)
T ss_dssp EE
T ss_pred CC
Confidence 53
No 243
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.16 E-value=4e-09 Score=124.75 Aligned_cols=323 Identities=12% Similarity=0.067 Sum_probs=215.6
Q ss_pred HHHHHHhhhccccchHhHHHHHHHHHHHHHhccc-hHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccc
Q 001349 269 LKHAITSLCMSEILNESEMAVLQIERCWLEASME-LDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKS 347 (1094)
Q Consensus 269 l~~~i~~L~~s~~l~~~e~a~~~i~~~~~~~~~~-~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~ 347 (1094)
+...+.-|. ++....++.|+..++.++....++ ..|..+++.|. |+++|..+.+..+++.++.+|.+|... +.
T Consensus 46 i~~Lv~lL~-s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~----Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~ 119 (457)
T 1xm9_A 46 ICKLVDLLR-SPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIRE----AVSLLRRTGNAEIQKQLTGLLWNLSST-DE 119 (457)
T ss_dssp HHHHHHHTT-SSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHH----HHHHHTTCCCHHHHHHHHHHHHHHHTS-SS
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHH----HHHHHhhCCCHHHHHHHHHHHHHHhcC-HH
Confidence 444444444 344455788888888888764444 44556666666 666666577899999999999999776 66
Q ss_pred hhhhhccCCCcHHHHHHHHh--------cCh------------HHHHHHHHhcCCChHHHHHh----hhhHHHHHHHHhc
Q 001349 348 VIHTLTRVESDVERIVALFK--------KGL------------LEAVVLIDLLRPSTRTLIEM----DMMESLMTVIKKK 403 (1094)
Q Consensus 348 ~~~~i~~~~~~~~~L~~lLk--------~g~------------~~Aa~~l~~L~~~~~~~~~~----~~~~~Ll~~l~~~ 403 (1094)
++..|++ ++++.|+.+|. ++. ..|+.+|.+|...++++..| +.+|+|+.+|..+
T Consensus 120 ~~~~i~~--g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~ 197 (457)
T 1xm9_A 120 LKEELIA--DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNC 197 (457)
T ss_dssp THHHHHH--HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHH
T ss_pred hHHHHHh--ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhh
Confidence 7877886 89999999993 221 17999999998877776665 4559999999975
Q ss_pred cccccccccCchhhHHHHHHHHhc----------------------------CCc-----------------ccccccch
Q 001349 404 EEDFLKMCLKPKSVSVLLLGQMIG----------------------------DSE-----------------ESIVSSIA 438 (1094)
Q Consensus 404 ~~~~~~~~~~~~~aa~~~l~~l~~----------------------------~~~-----------------~~~~~~~~ 438 (1094)
..+.. .-..-...++.+|..|.. .|. ...++...
T Consensus 198 ~~~~~-~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (457)
T 1xm9_A 198 VAASR-CDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGS 276 (457)
T ss_dssp HHHTC-TTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGG
T ss_pred ccccC-CchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHH
Confidence 11000 000012233333443310 010 01233455
Q ss_pred hhhccchhHHHHHHhhhcc-cHHHHHHHHHHHHHHhhccCcc-----hhhHhhhcCchhHHHHHHhcCCchhHHHHHHHH
Q 001349 439 NTIVSSKVFESVISSLEAE-WAEERIAAVGILLRCMQEDGKC-----RNSIADKAELAPVMESFMAASDGERFEIVCFLS 512 (1094)
Q Consensus 439 ~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~l~~~~~~~~~~-----r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 512 (1094)
..++..|+++.|+..|... +.+.++.|+.+|.+++..++.+ |..+.+.+.+++|++||.+++.+.+..|..+|.
T Consensus 277 ~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~ 356 (457)
T 1xm9_A 277 GWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLS 356 (457)
T ss_dssp GGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHH
Confidence 6778899999999999854 5788999999999888776654 445567899999999999999999999999999
Q ss_pred HHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccc---hhHHHH---HHhhhcccCCCCCCccHHHHHHHHHH
Q 001349 513 ELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQC---PVVAGL---LLQLDLLAEPRKMSIYREEAIDTLIS 586 (1094)
Q Consensus 513 el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~---~~~a~~---l~~l~~~~~~~~~~~~reea~~~~~~ 586 (1094)
+|..-++ + ...|.+ |. +..|+..|....++.+ .+++.. |.++-.-.......+...++++.|+.
T Consensus 357 nls~~~~---~---~~~i~~-~~---i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~ 426 (457)
T 1xm9_A 357 NMSRHPL---L---HRVMGN-QV---FPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIIN 426 (457)
T ss_dssp HHHTSGG---G---HHHHHH-HT---HHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHH
T ss_pred HHhcCHH---H---HHHHHH-hh---hHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHH
Confidence 9976432 2 233333 33 4448888876655322 123233 33332212223444556789999999
Q ss_pred HhhcCCChHHHHHHHHHHHhcccc
Q 001349 587 CLRNSDYPAAQLAAAKTIVSLQGR 610 (1094)
Q Consensus 587 ~l~~~~~~~~~~~~~~~~~~l~g~ 610 (1094)
.+.++...+++..|+.+|.++.++
T Consensus 427 L~~~~~~~~i~~~A~~~L~~~~~~ 450 (457)
T 1xm9_A 427 LCRSSASPKAAEAARLLLSDMWSS 450 (457)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTSSS
T ss_pred HHcCCCcHHHHHHHHHHHHHHHcc
Confidence 999885667899999998887643
No 244
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=7.3e-12 Score=107.14 Aligned_cols=51 Identities=16% Similarity=0.196 Sum_probs=45.1
Q ss_pred CCceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCC
Q 001349 161 PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTK 212 (1094)
Q Consensus 161 ~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~ 212 (1094)
.+++.||||++.|.+||+++|||+||+.||.+|+.. ...||.||+.+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 63 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPEDF 63 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCHHH
T ss_pred CCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCHhh
Confidence 347899999999999999999999999999999987 457999999876543
No 245
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.15 E-value=6.6e-09 Score=114.23 Aligned_cols=232 Identities=11% Similarity=0.011 Sum_probs=157.4
Q ss_pred cCcEEEEeeCCCCeEEEeCC--cceeecccCC-CcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccC-CC
Q 001349 784 EMVKVLSNGHDSSADFWNHR--ELVHVDSSEN-GKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHT-KA 857 (1094)
Q Consensus 784 d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~-~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~-~~ 857 (1094)
+++.+++++.++.|.+||.. +.+..+..+. ..+.++.++|+ +++ +.++.|..||. ++ +.+..+..+. ..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G--~~~W~~~~~~~~~ 78 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DG--RELWNIAAPAGCE 78 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TS--CEEEEEECCTTCE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CC--CEEEEEcCCCCcc
Confidence 46789999999999999985 3444444454 47889999997 555 56888999999 77 6788887653 57
Q ss_pred eEEEEEecCCCEEEEEeC-CCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCC
Q 001349 858 VTGLAILQSGEMLYSGSL-DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSK 936 (1094)
Q Consensus 858 V~sv~fspdg~~LaSgs~-DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~ 936 (1094)
+.++.+.++|+++++.+. ++.|..+|.+...+....... .+..-...+..+.+.++|+.
T Consensus 79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~---~~~~~~~~~~~v~~~~~G~~----------------- 138 (276)
T 3no2_A 79 MQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFET---GIERPHAQFRQINKNKKGNY----------------- 138 (276)
T ss_dssp EEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECC---SCSSGGGSCSCCEECTTSCE-----------------
T ss_pred ccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccC---CCCcccccccCceECCCCCE-----------------
Confidence 889999999999999887 777877776432222222111 00000001112225555553
Q ss_pred CceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeE
Q 001349 937 YPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNM 1016 (1094)
Q Consensus 937 ~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~ 1016 (1094)
+++.+.++.|..||.. |+.+..+.. . ..+.++.+.+++.+++++..++ .|..+|..+|+.
T Consensus 139 -----------lv~~~~~~~v~~~d~~-G~~~w~~~~------~-~~~~~~~~~~~g~~~v~~~~~~-~v~~~d~~tG~~ 198 (276)
T 3no2_A 139 -----------LVPLFATSEVREIAPN-GQLLNSVKL------S-GTPFSSAFLDNGDCLVACGDAH-CFVQLNLESNRI 198 (276)
T ss_dssp -----------EEEETTTTEEEEECTT-SCEEEEEEC------S-SCCCEEEECTTSCEEEECBTTS-EEEEECTTTCCE
T ss_pred -----------EEEecCCCEEEEECCC-CCEEEEEEC------C-CCccceeEcCCCCEEEEeCCCC-eEEEEeCcCCcE
Confidence 6677788999999988 888755432 1 3455677788888888776654 899999999999
Q ss_pred EEEecCC-------CCEEEEEEeCC-EEEEEEcCC---------eEEEEEC-CCCcEEEEec
Q 001349 1017 VGSLPTL-------SEVRAMVVSSE-LVYLGCKGG---------TVEIWDQ-KRQIRIETLQ 1060 (1094)
Q Consensus 1017 ~~~~~~~-------~~v~~l~~spd-~l~sgs~dg---------~I~vwd~-~t~~~~~~l~ 1060 (1094)
+.++... ..+..+...++ .+++++.+| ..+++.+ .+++.+..+.
T Consensus 199 ~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~ 260 (276)
T 3no2_A 199 VRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLN 260 (276)
T ss_dssp EEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEEC
T ss_pred EEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEec
Confidence 9988621 22677788777 344444322 3456665 5777777774
No 246
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.15 E-value=1.1e-10 Score=136.78 Aligned_cols=220 Identities=14% Similarity=0.058 Sum_probs=165.1
Q ss_pred chHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCCC--hHHHHHhh---hhHHHH
Q 001349 327 DPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPS--TRTLIEMD---MMESLM 397 (1094)
Q Consensus 327 ~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~--~~~~~~~~---~~~~Ll 397 (1094)
+..+++.|..+|.+|...+..++..|...+|.++.|+.+|+++ ...|+.+|.+|... +.++..+. .+|+||
T Consensus 213 ~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV 292 (458)
T 3nmz_A 213 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 292 (458)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHH
Confidence 4678999999999997666666666766677899999999987 56788899999873 56665554 459999
Q ss_pred HHHHhccccccccccCchhhHHHHHHHHhcCCcccc-cccchhhhc-cchhHHHHHHhhhcccH----HHHHHHHHHHHH
Q 001349 398 TVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESI-VSSIANTIV-SSKVFESVISSLEAEWA----EERIAAVGILLR 471 (1094)
Q Consensus 398 ~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~-~~~~~~~~~-~~~~~~~l~~~l~~~~~----~~~~~~~~~l~~ 471 (1094)
.+|....+.. -+..|+..|.+| +. +.+++.+|+ ..|+|+.|++.|..+.. +-+..|+.+|..
T Consensus 293 ~lLl~s~~~~------v~~~A~~aL~nL------s~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~n 360 (458)
T 3nmz_A 293 ECALEVKKES------TLKSVLSALWNL------SAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRN 360 (458)
T ss_dssp HHHTTCCSHH------HHHHHHHHHHHH------HHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHH
T ss_pred HHHhcCCCHH------HHHHHHHHHHHH------ccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHH
Confidence 9876533221 134455556666 33 446788888 89999999999997654 357778887766
Q ss_pred Hhh---ccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhh
Q 001349 472 CMQ---EDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQT 548 (1094)
Q Consensus 472 ~~~---~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~ 548 (1094)
+.. .+...|..+.+.+.+++|+++|++++...+..|..+|..|... ..+..+.|.+.|.++. |+..|+.
T Consensus 361 Ls~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-----~~~~~~~i~~~G~I~~---Lv~LL~s 432 (458)
T 3nmz_A 361 VSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-----NPKDQEALWDMGAVSM---LKNLIHS 432 (458)
T ss_dssp HHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-----CHHHHHHHHHHTHHHH---HHTTTTC
T ss_pred HHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-----CHHHHHHHHHCCCHHH---HHHHHhC
Confidence 554 5778899999999999999999999999999999999999754 2344566777888776 6666766
Q ss_pred cCCccchhHHHHHHhhhc
Q 001349 549 ANHDQCPVVAGLLLQLDL 566 (1094)
Q Consensus 549 ~~~~~~~~~a~~l~~l~~ 566 (1094)
..++.+-.+|..|..|-.
T Consensus 433 ~~~~v~~~Aa~AL~nL~~ 450 (458)
T 3nmz_A 433 KHKMIAMGSAAALRNLMA 450 (458)
T ss_dssp SSHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHc
Confidence 655656666666666544
No 247
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.15 E-value=4.6e-10 Score=135.31 Aligned_cols=304 Identities=13% Similarity=0.136 Sum_probs=222.6
Q ss_pred cccchHhHHHHHHHHHHHHHhccchHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCc
Q 001349 279 SEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESD 358 (1094)
Q Consensus 279 s~~l~~~e~a~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~ 358 (1094)
++....++.|+..+..++.... ++. .....+.++..+++.|..+.+..+++.+...|.+| +.+..++..|.+. +.
T Consensus 28 ~~~~~v~~~A~~~L~~l~~~~~-~~~--~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~l-s~~~~~~~~i~~~-g~ 102 (529)
T 1jdh_A 28 DEDQVVVNKAAVMVHQLSKKEA-SRH--AIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL-SHHREGLLAIFKS-GG 102 (529)
T ss_dssp CSCHHHHHHHHHHHHHHHTSHH-HHH--HHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-TTSHHHHHHHHHT-TH
T ss_pred CCCHHHHHHHHHHHHHHHcCCc-cHH--HHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHH-HcCchhHHHHHHc-CC
Confidence 3444556788888887775432 211 11234556777888887777889999999999999 4445578888865 79
Q ss_pred HHHHHHHHhcC----hHHHHHHHHhcCCCh-H---HHHHhhhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCc
Q 001349 359 VERIVALFKKG----LLEAVVLIDLLRPST-R---TLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSE 430 (1094)
Q Consensus 359 ~~~L~~lLk~g----~~~Aa~~l~~L~~~~-~---~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~ 430 (1094)
++.|+.+|+.+ ...|+.+|.+|...+ . .+...+.+|+|+.+|..++.. -...+...|..|..
T Consensus 103 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~-------~~~~~~~~L~~la~--- 172 (529)
T 1jdh_A 103 IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK-------FLAITTDCLQILAY--- 172 (529)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHH-------HHHHHHHHHHHHHT---
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHH-------HHHHHHHHHHHHHh---
Confidence 99999999987 567888999994432 2 233456679999999875321 12334444555522
Q ss_pred ccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHH
Q 001349 431 ESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCF 510 (1094)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 510 (1094)
.+.+++..+...|+++.|+..++.++.+.+..++.-++..+..+...|..+.+.+.+++++.++...+...+..++..
T Consensus 173 --~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~ 250 (529)
T 1jdh_A 173 --GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 250 (529)
T ss_dssp --TCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHH
T ss_pred --CCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHH
Confidence 346788899999999999999999888877766666666677788889999999999999999988877777788888
Q ss_pred HHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhc
Q 001349 511 LSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRN 590 (1094)
Q Consensus 511 l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~~~~~reea~~~~~~~l~~ 590 (1094)
|..|....... ++.-..+..|+.+|+...++-+.-++..|.+|..-.+..+..+...++++.|+..|..
T Consensus 251 L~~l~~~~~~~-----------~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~ 319 (529)
T 1jdh_A 251 LRNLSDAATKQ-----------EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR 319 (529)
T ss_dssp HHHHHTTCTTC-----------SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHhcCChhh-----------HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHc
Confidence 88887654321 1223456678888888888888889999999965322234455667899999999987
Q ss_pred C-CChHHHHHHHHHHHhcccc
Q 001349 591 S-DYPAAQLAAAKTIVSLQGR 610 (1094)
Q Consensus 591 ~-~~~~~~~~~~~~~~~l~g~ 610 (1094)
. +...++..|+++|.+|...
T Consensus 320 ~~~~~~v~~~a~~~L~nl~~~ 340 (529)
T 1jdh_A 320 AGDREDITEPAICALRHLTSR 340 (529)
T ss_dssp HTTCHHHHHHHHHHHHHHTSS
T ss_pred cCCHHHHHHHHHHHHHHHHcC
Confidence 4 4578999999999999754
No 248
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.14 E-value=4.1e-10 Score=139.51 Aligned_cols=304 Identities=13% Similarity=0.130 Sum_probs=221.2
Q ss_pred cccchHhHHHHHHHHHHHHHhccchHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCc
Q 001349 279 SEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESD 358 (1094)
Q Consensus 279 s~~l~~~e~a~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~ 358 (1094)
++....++.|+..+..++.... ++ ......+.++..+++.|..+.+..+++.++..|.+|. .+..++..|.+. +.
T Consensus 25 ~~~~~vr~~A~~~L~~La~~~~-~~--~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls-~~~~~~~~i~~~-g~ 99 (644)
T 2z6h_A 25 DEDQVVVNKAAVMVHQLSKKEA-SR--HAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLS-HHREGLLAIFKS-GG 99 (644)
T ss_dssp CSCHHHHHHHHHHHHHHHTSTT-HH--HHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHT-TSHHHHHHHHTT-TH
T ss_pred CCCHHHHHHHHHHHHHHHCCCh-hH--HHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHh-cChhhHHHHHHc-CC
Confidence 3344556788888888876543 22 2223445677778888887778999999999999984 445578888765 79
Q ss_pred HHHHHHHHhcC----hHHHHHHHHhcCCCh-H---HHHHhhhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCc
Q 001349 359 VERIVALFKKG----LLEAVVLIDLLRPST-R---TLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSE 430 (1094)
Q Consensus 359 ~~~L~~lLk~g----~~~Aa~~l~~L~~~~-~---~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~ 430 (1094)
++.|+.+|+++ ...|+.+|.+|...+ . .+..-+.+|.|+.+|..+... -+.++...|..|..
T Consensus 100 i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~-------~~~~a~~~L~~La~--- 169 (644)
T 2z6h_A 100 IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK-------FLAITTDCLQILAY--- 169 (644)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHH-------HHHHHHHHHHHHHT---
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHH-------HHHHHHHHHHHHHh---
Confidence 99999999987 567888999995432 2 223456679999999876321 13445555665532
Q ss_pred ccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHH
Q 001349 431 ESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCF 510 (1094)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 510 (1094)
.+.+++..++..|+++.|+..++.++.+....++.-++..+..+...|..+.+.+.+++++.++...+...+..++..
T Consensus 170 --~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~ 247 (644)
T 2z6h_A 170 --GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 247 (644)
T ss_dssp --TCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHH
T ss_pred --cCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 256788899999999999999998875554333334445555678889999999999999999988877788888999
Q ss_pred HHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhc
Q 001349 511 LSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRN 590 (1094)
Q Consensus 511 l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~~~~~reea~~~~~~~l~~ 590 (1094)
|..|....... ++.-..+..|+..|+...++-+..++..|.+|-.-.+..+..+++.++++.|+..|..
T Consensus 248 L~nL~~~~~~~-----------~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~ 316 (644)
T 2z6h_A 248 LRNLSDAATKQ-----------EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR 316 (644)
T ss_dssp HHHHGGGCTTC-----------CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHhhcchhh-----------hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHc
Confidence 99886553221 2223456678888887777777788999988865322234556677899999999987
Q ss_pred CC-ChHHHHHHHHHHHhcccc
Q 001349 591 SD-YPAAQLAAAKTIVSLQGR 610 (1094)
Q Consensus 591 ~~-~~~~~~~~~~~~~~l~g~ 610 (1094)
.. ...++..|+++|.+|.++
T Consensus 317 ~~~~~~v~~~a~~aL~nL~~~ 337 (644)
T 2z6h_A 317 AGDREDITEPAICALRHLTSR 337 (644)
T ss_dssp HTTCHHHHHHHHHHHHHHTSS
T ss_pred cCCcHHHHHHHHHHHHHHhcC
Confidence 54 478999999999999754
No 249
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.14 E-value=1.5e-08 Score=115.41 Aligned_cols=258 Identities=11% Similarity=0.158 Sum_probs=166.9
Q ss_pred EEEEEEC-----CCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEe----------CCCcEEEEECCCCce
Q 001349 825 KIFSGHS-----DGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGS----------LDKTARVWSIGNEEI 889 (1094)
Q Consensus 825 ~LaSgs~-----Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs----------~DgtI~vWdi~~~~~ 889 (1094)
.++.... ++.|.+.|..++ +.+.++.....+ . ++++|||+++++++ .+++|.+||..+++.
T Consensus 46 ~vyV~~~~~~~~~~~V~ViD~~t~--~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v 121 (386)
T 3sjl_D 46 RVYVNDPAHFAAVTQQFVIDGEAG--RVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLP 121 (386)
T ss_dssp EEEEEECGGGCSSEEEEEEETTTT--EEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE
T ss_pred EEEEEcCcccCCCCEEEEEECCCC--eEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeE
Confidence 5555543 689999999998 777887655555 4 99999999888775 367899999999863
Q ss_pred EE-EEecccCccceeeeecCceEEEeeCCCeEEEEEe--CCeEEEEcCCCC--ceEEE-------E--eCCEEEEEEcCC
Q 001349 890 HC-VQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLR--NGKTKLLNSSKY--PKCLA-------L--VQGKVYCGCQDG 955 (1094)
Q Consensus 890 ~~-~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~--~g~i~l~~~~~~--v~~l~-------~--s~~~l~sgs~Dg 955 (1094)
.. +.... ...+ .....+..+.|+|||+++.+.+. ++.+.++|.... +..+. + ....+++.+.||
T Consensus 122 ~~~I~v~~-g~r~-~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG 199 (386)
T 3sjl_D 122 TADIELPD-APRF-LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDG 199 (386)
T ss_dssp EEEEEETT-CCCC-CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTS
T ss_pred EEEEECCC-cccc-ccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCC
Confidence 22 22211 0000 00112334559999999988875 578999986432 22221 1 134578899999
Q ss_pred eEEEEECCC-CceeEEeccceeecCCCCCeE-EEEEe-CCccEEEEEECCCCEEEEEECCCCe--EEEEec---------
Q 001349 956 AIQEIDLAT-GTFATIQTGHRKLLGKANPVH-ALQVH-NGLVYTASTSLDGAAVKMWSTSNYN--MVGSLP--------- 1021 (1094)
Q Consensus 956 ~I~iwDl~~-~~~~~~~~~~~~~~~h~~~V~-sl~fs-~~~~~las~s~Dg~~I~iwd~~~~~--~~~~~~--------- 1021 (1094)
.+.+.++.+ ++...... ..+.....++. ...|. +++.++. .+.+ +.|.+.|+.+.. ....+.
T Consensus 200 ~~~~v~~~~~g~v~~~~~--~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~-g~V~v~d~~~~~~~v~~~~~~~~~~~~~~ 275 (386)
T 3sjl_D 200 SLAKVAFGTEGTPEITHT--EVFHPEDEFLINHPAYSQKAGRLVW-PTYT-GKIHQIDLSSGDAKFLPAVEALTEAERAD 275 (386)
T ss_dssp CEEEEECCSSSCCEEEEC--CCCSCTTSCBCSCCEEETTTTEEEE-EBTT-SEEEEEECTTSSCEECCCEESSCHHHHHT
T ss_pred CEEEEECCCCCeEEEeec--ceeccccccccccceeEcCCCcEEE-EeCC-CEEEEEECCCCcceeecceeccccccccc
Confidence 999999986 55532111 11111112222 23554 6775444 3334 499999997654 332221
Q ss_pred --CCCCEEEEEEeCC--EEEEEEc----------CCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCC-EEEEEe-CC
Q 001349 1022 --TLSEVRAMVVSSE--LVYLGCK----------GGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEE-FLVIGT-SD 1085 (1094)
Q Consensus 1022 --~~~~v~~l~~spd--~l~sgs~----------dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~-~L~sgs-~D 1085 (1094)
.......++++++ .++.... .+.|.++|..+++.+..+..++ .+++++|++|++ +|++++ .+
T Consensus 276 g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~--~~~~lavs~D~~~~ly~tn~~~ 353 (386)
T 3sjl_D 276 GWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH--EIDSINVSQDEKPLLYALSTGD 353 (386)
T ss_dssp TEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECSSSSCEEEEEETTT
T ss_pred cccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC--CcceEEECCCCCeEEEEEcCCC
Confidence 1223334677876 5555432 2579999999999999997554 689999999997 676654 48
Q ss_pred CcEEEEeCC
Q 001349 1086 GRIQAWGLS 1094 (1094)
Q Consensus 1086 G~I~iWdls 1094 (1094)
|.|.++|..
T Consensus 354 ~~VsViD~~ 362 (386)
T 3sjl_D 354 KTLYIHDAE 362 (386)
T ss_dssp TEEEEEETT
T ss_pred CeEEEEECC
Confidence 999999963
No 250
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=3.3e-11 Score=98.59 Aligned_cols=46 Identities=22% Similarity=0.607 Sum_probs=40.6
Q ss_pred CCCCceeccCccccccCcEEcCCcccccHHhHHHHHHh--CCCCCCCC
Q 001349 159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIER--GNSSCPIT 204 (1094)
Q Consensus 159 ~~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~--~~~~CP~c 204 (1094)
.+.+++.||||++.+.+|++++|||+||+.||.+|+.. ....||.|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34558999999999999999999999999999999764 45679998
No 251
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.13 E-value=5.5e-10 Score=134.91 Aligned_cols=311 Identities=11% Similarity=0.102 Sum_probs=223.4
Q ss_pred HHHHhhhccccchHhHHHHHHHHHHHHHhccc-hHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccchh
Q 001349 271 HAITSLCMSEILNESEMAVLQIERCWLEASME-LDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVI 349 (1094)
Q Consensus 271 ~~i~~L~~s~~l~~~e~a~~~i~~~~~~~~~~-~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~ 349 (1094)
..+.-|..++.-.-+.+|+..+..++....++ ..+...++.|.+ +. |+.+.+..+++.|+.+|.+++..++..+
T Consensus 123 ~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~L----v~-LL~s~~~~v~e~A~~aL~nLa~~~~~~r 197 (529)
T 3tpo_A 123 KFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAF----IS-LLASPHAHISEQAVWALGNIAGAGSAFR 197 (529)
T ss_dssp HHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHH----HH-HTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHH----HH-HHcCCCHHHHHHHHHHHHHHhccCHHHH
Confidence 33444444444444667777777777544433 455555555553 33 5667899999999999999977666666
Q ss_pred hhhccCCCcHHHHHHHHhcC---------hHHHHHHHHhcCCCh---HHHHHh-hhhHHHHHHHHhccccccccccCchh
Q 001349 350 HTLTRVESDVERIVALFKKG---------LLEAVVLIDLLRPST---RTLIEM-DMMESLMTVIKKKEEDFLKMCLKPKS 416 (1094)
Q Consensus 350 ~~i~~~~~~~~~L~~lLk~g---------~~~Aa~~l~~L~~~~---~~~~~~-~~~~~Ll~~l~~~~~~~~~~~~~~~~ 416 (1094)
..+. ..|.++.|+.+|+.. ...|+.+|.+|.... .....+ +.+|.|+.+|..+..+- ..
T Consensus 198 ~~i~-~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v-------~~ 269 (529)
T 3tpo_A 198 DLVI-KHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEV-------LA 269 (529)
T ss_dssp HHHH-HTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHH-------HH
T ss_pred HHHH-HcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHH-------HH
Confidence 6666 467899999999764 235667788774332 223333 34599999988764331 23
Q ss_pred hHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHH
Q 001349 417 VSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESF 496 (1094)
Q Consensus 417 aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~ 496 (1094)
.|...|..|..+ ..+....++..|+++.|++.+..++...+..|+.+|..+...+...+..+.+.+.+++|+.||
T Consensus 270 ~a~~aL~~l~~~-----~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL 344 (529)
T 3tpo_A 270 DSCWAISYLTDG-----PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 344 (529)
T ss_dssp HHHHHHHHHHSS-----CHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHT
T ss_pred HHHHHHHHhhhh-----hhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHH
Confidence 344445555322 235566788999999999999999999999999999888888888899999999999999999
Q ss_pred HhcCCchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCC-CCc
Q 001349 497 MAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRK-MSI 575 (1094)
Q Consensus 497 ~~~~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~-~~~ 575 (1094)
.+.....|..|...|..+...+. ...+.+.+.|.++. |+.+|++..++-+--+|..|.+|-.-.++.. .-+
T Consensus 345 ~~~~~~i~~~a~~aL~nl~~~~~-----~~~~~v~~~g~i~~---Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l 416 (529)
T 3tpo_A 345 TNPKTNIQKEATWTMSNITAGRQ-----DQIQQVVNHGLVPF---LVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYL 416 (529)
T ss_dssp TCSSHHHHHHHHHHHHHHHTSCH-----HHHHHHHHTTHHHH---HHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhcccH-----HHHHHHHhcCcHHH---HHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 99888888889999999876532 33344556666554 8888898888888889999998876554432 223
Q ss_pred cHHHHHHHHHHHhhcCCChHHHHHHHHHHHhcc
Q 001349 576 YREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQ 608 (1094)
Q Consensus 576 ~reea~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 608 (1094)
...++++.|+..|...+ +.+...+..+|.++-
T Consensus 417 ~~~g~i~~L~~LL~~~d-~~i~~~~L~aL~nil 448 (529)
T 3tpo_A 417 VHCGIIEPLMNLLSAKD-TKIIQVILDAISNIF 448 (529)
T ss_dssp HHTTCHHHHHHGGGCSC-HHHHHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHhcCCC-HHHHHHHHHHHHHHH
Confidence 35678999999998765 566778888887764
No 252
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.13 E-value=4.9e-09 Score=116.03 Aligned_cols=231 Identities=11% Similarity=0.089 Sum_probs=150.4
Q ss_pred cccccccCc-EEEEeeCCCCeEEEeCCcceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEe-cc
Q 001349 778 YSPLAFEMV-KVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQI-RE 853 (1094)
Q Consensus 778 ~~~~~~d~~-~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l-~~ 853 (1094)
...+.+++. .++++..++.|..|+.......+..+...+.+++|+++ ++++...++.|.+||..++....+... .+
T Consensus 32 g~~~d~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~ 111 (296)
T 3e5z_A 32 GPVYVPARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEG 111 (296)
T ss_dssp EEEEEGGGTEEEEEEGGGTEEEEEETTSCEEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETT
T ss_pred CCeEeCCCCEEEEEeCCCCEEEEEECCCCeEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCC
Confidence 345667787 67788888999999988545666677888999999986 555555678999999988743222111 11
Q ss_pred -cCCCeEEEEEecCCCEEEEEeC-----------------CCcEEEEECCCCceEEEEecccCccceeeeecCceEEEee
Q 001349 854 -HTKAVTGLAILQSGEMLYSGSL-----------------DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIP 915 (1094)
Q Consensus 854 -H~~~V~sv~fspdg~~LaSgs~-----------------DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fsp 915 (1094)
....+..++++|+|+++++.+. .+.|..|+.. ++.... .........+ +|+|
T Consensus 112 ~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~--~~~~~~~~gi-------~~s~ 181 (296)
T 3e5z_A 112 KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAP--IRDRVKPNGL-------AFLP 181 (296)
T ss_dssp EECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEE--ECCCSSEEEE-------EECT
T ss_pred CCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEe--ecCCCCCccE-------EECC
Confidence 1235678999999998887431 2344444444 332222 1112222333 3777
Q ss_pred CCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECC-CCce-eEEeccceeecCCCCCeEEEEEeCCc
Q 001349 916 QGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLA-TGTF-ATIQTGHRKLLGKANPVHALQVHNGL 993 (1094)
Q Consensus 916 dg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~-~~~~-~~~~~~~~~~~~h~~~V~sl~fs~~~ 993 (1094)
+|+. +++.+.++.|.+||+. ++.. ... ..+..+...+..+++++++
T Consensus 182 dg~~----------------------------lv~~~~~~~i~~~~~~~~g~~~~~~----~~~~~~~~~p~~i~~d~~G 229 (296)
T 3e5z_A 182 SGNL----------------------------LVSDTGDNATHRYCLNARGETEYQG----VHFTVEPGKTDGLRVDAGG 229 (296)
T ss_dssp TSCE----------------------------EEEETTTTEEEEEEECSSSCEEEEE----EEECCSSSCCCSEEEBTTS
T ss_pred CCCE----------------------------EEEeCCCCeEEEEEECCCCcCcCCC----eEeeCCCCCCCeEEECCCC
Confidence 7765 4455567788899886 4544 110 1112244566789999999
Q ss_pred cEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEe-CC--EEEEEEcCCeEEEEECCCCcE
Q 001349 994 VYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVS-SE--LVYLGCKGGTVEIWDQKRQIR 1055 (1094)
Q Consensus 994 ~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~s-pd--~l~sgs~dg~I~vwd~~t~~~ 1055 (1094)
.+.++. + +.|.+||.. ++.+..+..+..+.+++|. ++ .+++++.+ .+.-++..+.+.
T Consensus 230 ~l~v~~--~-~~v~~~~~~-g~~~~~~~~~~~~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 230 LIWASA--G-DGVHVLTPD-GDELGRVLTPQTTSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp CEEEEE--T-TEEEEECTT-SCEEEEEECSSCCCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred CEEEEc--C-CeEEEECCC-CCEEEEEECCCCceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence 877766 4 489999986 7777777743338899994 66 68888765 455666666543
No 253
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.13 E-value=4.5e-10 Score=141.82 Aligned_cols=304 Identities=13% Similarity=0.134 Sum_probs=220.3
Q ss_pred cccchHhHHHHHHHHHHHHHhccchHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCc
Q 001349 279 SEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESD 358 (1094)
Q Consensus 279 s~~l~~~e~a~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~ 358 (1094)
++....++.|+..+..++....... .....+.++..+++.|..+.+..+++.|+..|.+| +.++.++..|.+. +.
T Consensus 161 ~~d~~vr~~A~~~L~~L~~~~~~~~---~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~L-s~~~~~~~~i~~~-g~ 235 (780)
T 2z6g_A 161 DEDQVVVNKAAVMVHQLSKKEASRH---AIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNL-SHHREGLLAIFKS-GG 235 (780)
T ss_dssp CSCHHHHHHHHHHHHHHHTSHHHHH---HHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HTSHHHHHHHHHT-TH
T ss_pred CCCHHHHHHHHHHHHHHhCCChhHH---HHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHH-hCCchhHHHHHHc-CC
Confidence 3333446778877777776432211 12234567777888887777899999999999997 5555667777765 79
Q ss_pred HHHHHHHHhcC----hHHHHHHHHhcCCCh-HHHH---HhhhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCc
Q 001349 359 VERIVALFKKG----LLEAVVLIDLLRPST-RTLI---EMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSE 430 (1094)
Q Consensus 359 ~~~L~~lLk~g----~~~Aa~~l~~L~~~~-~~~~---~~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~ 430 (1094)
++.|+.+|+.+ ..+|+.+|.+|.... .... .-+.+|.|+.+|...... -...+...|..|..
T Consensus 236 I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~-------v~~~a~~aL~~La~--- 305 (780)
T 2z6g_A 236 IPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK-------FLAITTDCLQILAY--- 305 (780)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHH-------HHHHHHHHHHHHHT---
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHH-------HHHHHHHHHHHHhc---
Confidence 99999999987 678899999995432 2222 345669999999874311 12333334544421
Q ss_pred ccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHH
Q 001349 431 ESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCF 510 (1094)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 510 (1094)
.+.+++..++..|+++.|+..++.++.+.+..++..++..+..+...|..+.+.+.+++|+.++...+...+..|+.+
T Consensus 306 --~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~ 383 (780)
T 2z6g_A 306 --GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 383 (780)
T ss_dssp --TCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHH
T ss_pred --CChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHH
Confidence 356788899999999999999998887776655555555666778889999999999999999988777778888888
Q ss_pred HHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhc
Q 001349 511 LSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRN 590 (1094)
Q Consensus 511 l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~~~~~reea~~~~~~~l~~ 590 (1094)
|..|...... .++.-..+..|+..|+...++-+..++..|.+|..-.+..+..+.+.++++.|+..|..
T Consensus 384 L~~L~~~~~~-----------~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~ 452 (780)
T 2z6g_A 384 LRNLSDAATK-----------QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR 452 (780)
T ss_dssp HHHHHTTCTT-----------CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHhccchh-----------hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHc
Confidence 8888765432 12223456667888887777777888889988865322334455567899999999987
Q ss_pred CC-ChHHHHHHHHHHHhcccc
Q 001349 591 SD-YPAAQLAAAKTIVSLQGR 610 (1094)
Q Consensus 591 ~~-~~~~~~~~~~~~~~l~g~ 610 (1094)
.. ...++..|+++|.+|...
T Consensus 453 ~~~~~~v~~~Al~aL~nL~~~ 473 (780)
T 2z6g_A 453 AGDREDITEPAICALRHLTSR 473 (780)
T ss_dssp HTTCHHHHHHHHHHHHHTTSS
T ss_pred cCCHHHHHHHHHHHHHHHHhc
Confidence 44 448999999999999754
No 254
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.11 E-value=1e-09 Score=137.31 Aligned_cols=238 Identities=8% Similarity=0.013 Sum_probs=149.6
Q ss_pred ccccccccCcEEE-----EeeCCCCeEEEeCCcceeecccCCCcE--EEEEEeCC--EEEEEECCCe-------------
Q 001349 777 KYSPLAFEMVKVL-----SNGHDSSADFWNHRELVHVDSSENGKV--LSIACFRD--KIFSGHSDGT------------- 834 (1094)
Q Consensus 777 ~~~~~~~d~~~l~-----s~s~dg~I~vWd~~~~~~~~~~h~~~V--~~l~fspd--~LaSgs~Dg~------------- 834 (1094)
....+++||++++ .|+.+..|++||..+.......+...+ ..++|+|| .|+.++.|..
T Consensus 124 ~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~ 203 (695)
T 2bkl_A 124 GTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTT 203 (695)
T ss_dssp EEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCE
T ss_pred EEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCE
Confidence 3456788999998 455567899999984332212222222 68999997 8888888776
Q ss_pred EEEEecCCCcce--eEEEecccCCCeEEEEEecCCCEEEEEeCCC----cEEEEECCCCceEEEEecccCccceeeeecC
Q 001349 835 IKVWTGRGSILH--LIQQIREHTKAVTGLAILQSGEMLYSGSLDK----TARVWSIGNEEIHCVQVHDIKDQIQNLAVSN 908 (1094)
Q Consensus 835 I~vWd~~t~~~~--~~~~l~~H~~~V~sv~fspdg~~LaSgs~Dg----tI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~ 908 (1094)
|++|++.++... .+.....|...+.++.|||||++|+.++.++ .|.+|+..+++...+... ...+...
T Consensus 204 v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~--~~~~~~~---- 277 (695)
T 2bkl_A 204 IRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKG--VGAKYEV---- 277 (695)
T ss_dssp EEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEEC--SSCCEEE----
T ss_pred EEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecC--CCceEEE----
Confidence 999999987422 4444455667899999999999998888766 677776655543333322 1122221
Q ss_pred ceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCC--CCCeEE
Q 001349 909 SILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGK--ANPVHA 986 (1094)
Q Consensus 909 ~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h--~~~V~s 986 (1094)
+.++|. +.+.+.. ...++.|.+||+.++..... ..+..+ ...+..
T Consensus 278 ----~~~~g~-l~~~s~~------------------------~~~~~~l~~~d~~~~~~~~~----~~l~~~~~~~~l~~ 324 (695)
T 2bkl_A 278 ----HAWKDR-FYVLTDE------------------------GAPRQRVFEVDPAKPARASW----KEIVPEDSSASLLS 324 (695)
T ss_dssp ----EEETTE-EEEEECT------------------------TCTTCEEEEEBTTBCSGGGC----EEEECCCSSCEEEE
T ss_pred ----EecCCc-EEEEECC------------------------CCCCCEEEEEeCCCCCccCC----eEEecCCCCCeEEE
Confidence 124444 2211100 01357899999987652000 112222 345788
Q ss_pred EEEeCCccEEEEEECCCCEEEEEECC-CCeEEEEec--CCCCEEEEEEeCC--EEE-EEE---cCCeEEEEECCCCcE
Q 001349 987 LQVHNGLVYTASTSLDGAAVKMWSTS-NYNMVGSLP--TLSEVRAMVVSSE--LVY-LGC---KGGTVEIWDQKRQIR 1055 (1094)
Q Consensus 987 l~fs~~~~~las~s~Dg~~I~iwd~~-~~~~~~~~~--~~~~v~~l~~spd--~l~-sgs---~dg~I~vwd~~t~~~ 1055 (1094)
+.++ ++.++++...|+ ..+||.+. ++.....+. ....+..++++++ .++ +.+ ..++|++||+.+++.
T Consensus 325 ~~~~-~~~lv~~~~~dg-~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 325 VSIV-GGHLSLEYLKDA-TSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEE-TTEEEEEEEETT-EEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEE-CCEEEEEEEECC-EEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 8888 566777777776 77777654 455556565 2456777888876 333 332 247899999988763
No 255
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.11 E-value=4.9e-10 Score=134.67 Aligned_cols=311 Identities=11% Similarity=0.101 Sum_probs=221.9
Q ss_pred HHHHhhhccccchHhHHHHHHHHHHHHHhccc-hHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccchh
Q 001349 271 HAITSLCMSEILNESEMAVLQIERCWLEASME-LDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVI 349 (1094)
Q Consensus 271 ~~i~~L~~s~~l~~~e~a~~~i~~~~~~~~~~-~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~ 349 (1094)
..|.-|..++.-.-+++|+..+..++....++ ..+...++.|. |+.+ +.+.+..+++.|+.+|.++....+..+
T Consensus 104 ~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~----Lv~l-L~s~~~~v~e~A~~aL~nLa~d~~~~r 178 (510)
T 3ul1_B 104 KFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPA----FISL-LASPHAHISEQAVWALGNIAGDGSAFR 178 (510)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHH----HHHH-TTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHH----HHHH-HcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 34444544444344677887788777544433 45555555555 4433 357889999999999999976666555
Q ss_pred hhhccCCCcHHHHHHHHhcC---------hHHHHHHHHhcCCCh---HHHHHh-hhhHHHHHHHHhccccccccccCchh
Q 001349 350 HTLTRVESDVERIVALFKKG---------LLEAVVLIDLLRPST---RTLIEM-DMMESLMTVIKKKEEDFLKMCLKPKS 416 (1094)
Q Consensus 350 ~~i~~~~~~~~~L~~lLk~g---------~~~Aa~~l~~L~~~~---~~~~~~-~~~~~Ll~~l~~~~~~~~~~~~~~~~ 416 (1094)
..+. ..|.++.|+.+|+.. ...|+..|.++.... ..+..+ +.+|.|+.+|.....+. ..
T Consensus 179 ~~v~-~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v-------~~ 250 (510)
T 3ul1_B 179 DLVI-KHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEV-------LA 250 (510)
T ss_dssp HHHH-HTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHH-------HH
T ss_pred HHHH-HcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHH-------HH
Confidence 5555 567999999999764 235666777774322 233333 34499999988764331 33
Q ss_pred hHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHH
Q 001349 417 VSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESF 496 (1094)
Q Consensus 417 aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~ 496 (1094)
.|...|..|.. ...+....++..|+++.|++++..++...+..++.+|.++...+...+..+.+.+.+++|+.||
T Consensus 251 ~A~~aL~~L~~-----~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL 325 (510)
T 3ul1_B 251 DSCWAISYLTD-----GPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 325 (510)
T ss_dssp HHHHHHHHHTS-----SCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CT
T ss_pred HHHHHHHHHhh-----chhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHh
Confidence 44555666632 2235566788999999999999999999999999999998888888899999999999999999
Q ss_pred HhcCCchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCC-CCc
Q 001349 497 MAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRK-MSI 575 (1094)
Q Consensus 497 ~~~~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~-~~~ 575 (1094)
.+.....|..|...|..+...+. ...+.+.+.|.++. |+..|++..++-+--+|..|.+|-.-.++.. ..+
T Consensus 326 ~~~~~~v~~~A~~aL~nl~a~~~-----~~~~~v~~~g~i~~---Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L 397 (510)
T 3ul1_B 326 TNPKTNIQKEATWTMSNITAGRQ-----DQIQQVVNHGLVPF---LVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYL 397 (510)
T ss_dssp TCSSHHHHHHHHHHHHHHTTSCH-----HHHHHHHHTTHHHH---HHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCcH-----HHHHHHHhcCCHHH---HHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 98888888889999999876532 33445556665554 8888988888888889999988876544432 223
Q ss_pred cHHHHHHHHHHHhhcCCChHHHHHHHHHHHhcc
Q 001349 576 YREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQ 608 (1094)
Q Consensus 576 ~reea~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 608 (1094)
...++++.|+..|+..+ ++++..+..+|.++-
T Consensus 398 ~~~g~i~~L~~LL~~~d-~~i~~~~L~aL~nil 429 (510)
T 3ul1_B 398 VHCGIIEPLMNLLSAKD-TKIIQVILDAISNIF 429 (510)
T ss_dssp HHTTCHHHHHHGGGCSC-HHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHhcCCC-HHHHHHHHHHHHHHH
Confidence 46688999999998765 567888888887753
No 256
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.10 E-value=8.9e-09 Score=111.82 Aligned_cols=228 Identities=7% Similarity=-0.024 Sum_probs=145.4
Q ss_pred ccccCcEEE-EeeCCCCeEEEeCCcceee--cccCCCcEEEEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEec-ccC
Q 001349 781 LAFEMVKVL-SNGHDSSADFWNHRELVHV--DSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIR-EHT 855 (1094)
Q Consensus 781 ~~~d~~~l~-s~s~dg~I~vWd~~~~~~~--~~~h~~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~-~H~ 855 (1094)
+.+++..++ +...++.|.+|+....... ...+...+.+++++++ .++.++.++.|.+||..++. . ..+. ...
T Consensus 31 ~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~--~-~~~~~~~~ 107 (270)
T 1rwi_B 31 VDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNN--Q-TVLPFDGL 107 (270)
T ss_dssp ECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSC--C-EECCCCSC
T ss_pred ECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCce--E-eeeecCCc
Confidence 445677666 5477889999987632222 1234457889999986 44444448999999988762 2 2232 233
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCC
Q 001349 856 KAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS 935 (1094)
Q Consensus 856 ~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~ 935 (1094)
..+..++++++|+++++...++.|.+|+..+..... ........+.. ++++++|+.
T Consensus 108 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~-~~~~~~~~p~~-------i~~~~~g~l---------------- 163 (270)
T 1rwi_B 108 NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV-LPFTGLNDPDG-------VAVDNSGNV---------------- 163 (270)
T ss_dssp SSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEE-CCCCSCCSCCC-------EEECTTCCE----------------
T ss_pred CCCcceEECCCCCEEEEECCCCEEEEEECCCceeEe-eccccCCCcee-------EEEeCCCCE----------------
Confidence 678999999999988887788999999765542111 11111112222 335555542
Q ss_pred CCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCe
Q 001349 936 KYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN 1015 (1094)
Q Consensus 936 ~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~ 1015 (1094)
+++...++.|.+||...+..... ...+...+..+++++++.+.++...++ .|.+||.....
T Consensus 164 ------------~v~~~~~~~i~~~~~~~~~~~~~------~~~~~~~p~~i~~d~~g~l~v~~~~~~-~v~~~~~~~~~ 224 (270)
T 1rwi_B 164 ------------YVTDTDNNRVVKLEAESNNQVVL------PFTDITAPWGIAVDEAGTVYVTEHNTN-QVVKLLAGSTT 224 (270)
T ss_dssp ------------EEEEGGGTEEEEECTTTCCEEEC------CCSSCCSEEEEEECTTCCEEEEETTTS-CEEEECTTCSC
T ss_pred ------------EEEECCCCEEEEEecCCCceEee------cccCCCCceEEEECCCCCEEEEECCCC-cEEEEcCCCCc
Confidence 33334467889999876654321 112235688999999987666665554 89999987654
Q ss_pred EEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCc
Q 001349 1016 MVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQI 1054 (1094)
Q Consensus 1016 ~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~ 1054 (1094)
...... +...+.+++++++ .+++...++.|++|+....+
T Consensus 225 ~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 225 STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp CEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred ceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 433222 3367899999987 56666788999999987654
No 257
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=5.9e-11 Score=100.85 Aligned_cols=51 Identities=22% Similarity=0.581 Sum_probs=45.3
Q ss_pred CCCCceeccCccccccCc-------EEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCC
Q 001349 159 TPPKDFVCPITTHIFDDP-------VTLETGQTYERRAIQEWIERGNSSCPITRQKLSS 210 (1094)
Q Consensus 159 ~~~~~~~CpIc~~~~~dP-------v~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~ 210 (1094)
.+++++.||||++.|.+| ++++|||.||+.||.+|+.. ...||.||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 345589999999999998 88999999999999999988 5689999998764
No 258
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.09 E-value=1.6e-07 Score=103.13 Aligned_cols=235 Identities=9% Similarity=0.058 Sum_probs=154.3
Q ss_pred cCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 001349 811 SENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE 888 (1094)
Q Consensus 811 ~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~ 888 (1094)
.....+.++++.++ +.++...++.|.+||.. +.... ..+..+...+.++++.++|.++++...++.|..||.. ++
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~ 93 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG 93 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC
Confidence 34567899999986 55555568999999988 53222 2333445679999999999988887778899999988 54
Q ss_pred eEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEE-cCCeEEEEECCCCce
Q 001349 889 IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGC-QDGAIQEIDLATGTF 967 (1094)
Q Consensus 889 ~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs-~Dg~I~iwDl~~~~~ 967 (1094)
............+..+. +.++|+ ++++. .++.|..||.. ++.
T Consensus 94 ~~~~~~~~~~~~~~~i~-------~~~~g~-----------------------------l~v~~~~~~~i~~~~~~-g~~ 136 (300)
T 2qc5_A 94 FTEYPLPQPDSGPYGIT-------EGLNGD-----------------------------IWFTQLNGDRIGKLTAD-GTI 136 (300)
T ss_dssp EEEEECSSTTCCEEEEE-------ECSTTC-----------------------------EEEEETTTTEEEEECTT-SCE
T ss_pred eEEecCCCCCCCCccce-------ECCCCC-----------------------------EEEEccCCCeEEEECCC-CCE
Confidence 33222211112233332 444443 33333 36788888877 554
Q ss_pred eEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEE-ec-CCCCEEEEEEeCC-EEEEEE-cCC
Q 001349 968 ATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGS-LP-TLSEVRAMVVSSE-LVYLGC-KGG 1043 (1094)
Q Consensus 968 ~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~-~~-~~~~v~~l~~spd-~l~sgs-~dg 1043 (1094)
... ........+..+++++++.+.++...+ +.|..||. +++.... .. ....+..++++++ .++.+. .++
T Consensus 137 ~~~-----~~~~~~~~~~~i~~d~~g~l~v~~~~~-~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~ 209 (300)
T 2qc5_A 137 YEY-----DLPNKGSYPAFITLGSDNALWFTENQN-NSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGN 209 (300)
T ss_dssp EEE-----ECSSTTCCEEEEEECTTSSEEEEETTT-TEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTT
T ss_pred EEc-----cCCCCCCCceeEEECCCCCEEEEecCC-CeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCC
Confidence 421 112234568899999988866665444 48999998 5554432 21 3456889999987 455554 467
Q ss_pred eEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1044 TVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1044 ~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
.|.+||. +++........+...+.+++++++|++.++...++.|..|+.
T Consensus 210 ~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 210 KIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp EEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred EEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence 8999998 555443322334567899999999997777666788988874
No 259
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.09 E-value=5.1e-11 Score=103.05 Aligned_cols=55 Identities=18% Similarity=0.250 Sum_probs=45.9
Q ss_pred CCCceeccCccccc--cCcEEcC--CcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCC
Q 001349 160 PPKDFVCPITTHIF--DDPVTLE--TGQTYERRAIQEWIERGNSSCPITRQKLSSTKLP 214 (1094)
Q Consensus 160 ~~~~~~CpIc~~~~--~dPv~~~--cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~ 214 (1094)
+.+++.||||++.+ .|+++++ |||+||+.|+.+++..+...||.||+.+....+.
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~ 66 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAV 66 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSC
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchh
Confidence 34589999999988 4666665 9999999999999876667899999998876654
No 260
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.08 E-value=1.8e-09 Score=123.63 Aligned_cols=184 Identities=11% Similarity=0.027 Sum_probs=130.4
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCC
Q 001349 857 AVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSK 936 (1094)
Q Consensus 857 ~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~ 936 (1094)
.++.+++++...++++|+.|+ +++|++..... ... ..... | .. .....+.+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~-~~~--~~~~~------------~------------~~-~~~~~lp~ 89 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRD-HIT--SDSTP------------L------------TF-KWEKEIPD 89 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHH-HHH--SSSCC------------C------------CC-SEEEECTT
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhh-hhc--ccccc------------c------------cc-eEEeeCCC
Confidence 689999999999999999985 66799765310 000 00000 0 00 00112333
Q ss_pred CceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeE
Q 001349 937 YPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNM 1016 (1094)
Q Consensus 937 ~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~ 1016 (1094)
|..++|+++.++++ .++.|++||+.+.... .....|..++.++.+.+.. ++.+..|| .|.+||+.++..
T Consensus 90 -V~~l~fd~~~L~v~-~~~~l~v~dv~sl~~~------~~~~~~~~~v~~i~~~~p~--~av~~~dG-~L~v~dl~~~~~ 158 (388)
T 1xip_A 90 -VIFVCFHGDQVLVS-TRNALYSLDLEELSEF------RTVTSFEKPVFQLKNVNNT--LVILNSVN-DLSALDLRTKST 158 (388)
T ss_dssp -EEEEEEETTEEEEE-ESSEEEEEESSSTTCE------EEEEECSSCEEEEEECSSE--EEEEETTS-EEEEEETTTCCE
T ss_pred -eeEEEECCCEEEEE-cCCcEEEEEchhhhcc------CccceeecceeeEEecCCC--EEEEECCC-CEEEEEccCCcc
Confidence 66666644557777 8899999999876643 2334556678888776543 66677786 999999998776
Q ss_pred EEEecCCCCEEEEEEeCCEEEEEEcCCeEEEEECCCCcE--EEEec------c--cCCcceEEEEEcCCCCEEEEEe
Q 001349 1017 VGSLPTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIR--IETLQ------T--GTSGKVQCMALDDNEEFLVIGT 1083 (1094)
Q Consensus 1017 ~~~~~~~~~v~~l~~spd~l~sgs~dg~I~vwd~~t~~~--~~~l~------~--~h~~~I~~l~~Spdg~~L~sgs 1083 (1094)
.. ....|++++|||+.++.|..||++++|+...+.. ..++. . +|...|.++.|.+++.++++-+
T Consensus 159 ~~---~~~~Vs~v~WSpkG~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 159 KQ---LAQNVTSFDVTNSQLAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EE---EEESEEEEEECSSEEEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred cc---ccCCceEEEEcCCceEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 53 3468999999999999999999999999888775 55661 1 3677899999999999888643
No 261
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.08 E-value=9.8e-08 Score=105.85 Aligned_cols=234 Identities=12% Similarity=0.069 Sum_probs=144.9
Q ss_pred CCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 001349 812 ENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE 888 (1094)
Q Consensus 812 h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~ 888 (1094)
+..-.-+..|+++ ++++...++.|..||..++. . ..+ .+...+.+++++++|+++++ . ++.|.+||..+++
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~--~-~~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~ 84 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQ--V-QRV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQS 84 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCC--E-EEE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCc--E-EEE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCc
Confidence 3445568889983 67777788999999999873 2 223 34578999999999996554 4 5679999999886
Q ss_pred eEEEEecccC---ccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCC
Q 001349 889 IHCVQVHDIK---DQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATG 965 (1094)
Q Consensus 889 ~~~~~~~~~~---~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~ 965 (1094)
...+...... ..+.. +.++|+|+..+......... . ......+.|..+|.. +
T Consensus 85 ~~~~~~~~~~~~~~~~~d-------i~~d~dG~l~~~~~~~~~~~------~-----------~~~~~~~~l~~~d~~-g 139 (297)
T 3g4e_A 85 AVVLATVDNDKKNNRFND-------GKVDPAGRYFAGTMAEETAP------A-----------VLERHQGALYSLFPD-H 139 (297)
T ss_dssp EEEEEECCTTCSSEEEEE-------EEECTTSCEEEEEEECCSBT------T-----------BCCTTCEEEEEECTT-S
T ss_pred EEEEEecCCCCCCCCCCC-------EEECCCCCEEEecCCccccc------c-----------cccCCCcEEEEEECC-C
Confidence 5544332211 12233 34788887433222111000 0 000011233444432 3
Q ss_pred ceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEEC--CCCeEE-----EEec-CCCCEEEEEEeCC-EE
Q 001349 966 TFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWST--SNYNMV-----GSLP-TLSEVRAMVVSSE-LV 1036 (1094)
Q Consensus 966 ~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~--~~~~~~-----~~~~-~~~~v~~l~~spd-~l 1036 (1094)
..... ..+....+.++|++++..+..+....+.|.+||+ .++... ..+. +...+..++++++ .+
T Consensus 140 ~~~~~-------~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~l 212 (297)
T 3g4e_A 140 HVKKY-------FDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKL 212 (297)
T ss_dssp CEEEE-------EEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCE
T ss_pred CEEEE-------eeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCE
Confidence 32211 1112346789999998766544433358999987 455432 2222 2356889999987 44
Q ss_pred EEE-EcCCeEEEEECCCCcEEEEecccCCcceEEEEEc-CCCCEEEEEeC
Q 001349 1037 YLG-CKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALD-DNEEFLVIGTS 1084 (1094)
Q Consensus 1037 ~sg-s~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~S-pdg~~L~sgs~ 1084 (1094)
+++ ..++.|.+||..+++.+..+. .+...+++++|. ||++.|+.++.
T Consensus 213 wva~~~~~~v~~~d~~tG~~~~~i~-~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 213 WVACYNGGRVIRLDPVTGKRLQTVK-LPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEEETTTEEEEECTTTCCEEEEEE-CSSSBEEEEEEESGGGCEEEEEEB
T ss_pred EEEEcCCCEEEEEcCCCceEEEEEE-CCCCCceEEEEeCCCCCEEEEEcC
Confidence 444 557889999999999988884 455689999998 88887765543
No 262
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.08 E-value=2.3e-11 Score=101.67 Aligned_cols=53 Identities=19% Similarity=0.492 Sum_probs=47.4
Q ss_pred ceeccCccccccCc-------EEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChh
Q 001349 163 DFVCPITTHIFDDP-------VTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTN 217 (1094)
Q Consensus 163 ~~~CpIc~~~~~dP-------v~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN 217 (1094)
++.||||++.+.+| ++++|||+||+.||.+|+.. +..||.||+.+...++. ++
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~-~~ 62 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYH-PI 62 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEE-EC
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCcccee-ee
Confidence 78999999999998 88999999999999999998 56899999999887764 44
No 263
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.07 E-value=1.6e-09 Score=129.63 Aligned_cols=278 Identities=16% Similarity=0.166 Sum_probs=194.0
Q ss_pred HhhhHhhhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCC--ChHHHH
Q 001349 315 INGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRP--STRTLI 388 (1094)
Q Consensus 315 ~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~--~~~~~~ 388 (1094)
+..+|.+|. +.++.++..|...|.++...+..++..|.. .|+++.|+.+|+++ ..+|+.+|.+|.. .++|+.
T Consensus 50 i~~LV~~L~-s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~-~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~ 127 (584)
T 3l6x_A 50 LPEVIAMLG-FRLDAVKSNAAAYLQHLCYRNDKVKTDVRK-LKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKI 127 (584)
T ss_dssp HHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHHHHcCChHHHHHHHH-cCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence 344566664 568899999999999998778888888874 56899999999998 6788899999987 378877
Q ss_pred Hhhh---hHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhh---c------
Q 001349 389 EMDM---MESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLE---A------ 456 (1094)
Q Consensus 389 ~~~~---~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~---~------ 456 (1094)
.|.. +|+||.+|+++....+ +..+..+|-.| +.+.+++..|++ ++|+.|+..+- .
T Consensus 128 ~I~~~GaIp~LV~LL~s~~~~~~------~e~aa~aL~nL------S~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~ 194 (584)
T 3l6x_A 128 AIKNCDGVPALVRLLRKARDMDL------TEVITGTLWNL------SSHDSIKMEIVD-HALHALTDEVIIPHSGWEREP 194 (584)
T ss_dssp HHHHTTHHHHHHHHHHHCCSHHH------HHHHHHHHHHH------TTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC---
T ss_pred HHHHcCCHHHHHHHHcCCCCHHH------HHHHHHHHHHH------hCCchhhHHHHh-ccHHHHHHHHhcccccccccc
Confidence 7754 4999999998532211 23344445555 456788999995 78999999872 1
Q ss_pred ---------ccHHHHHHHHHHHHHHhhccCcchhhHhhhcC-chhHHHHHHhc------CCchhHHHHHHHHHHHhccc-
Q 001349 457 ---------EWAEERIAAVGILLRCMQEDGKCRNSIADKAE-LAPVMESFMAA------SDGERFEIVCFLSELVKLNR- 519 (1094)
Q Consensus 457 ---------~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~-~~~~~~l~~~~------~~~~~~~~~~~l~el~~~~r- 519 (1094)
.+.+-+.+|+.+|..+...+..+|..|.+... +++||+++++. +.+..++|+..|..|....-
T Consensus 195 ~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~ 274 (584)
T 3l6x_A 195 NEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHR 274 (584)
T ss_dssp -------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHH
T ss_pred cccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccc
Confidence 13577889999888777666678999988655 57999999863 45667789999988875410
Q ss_pred cch-hHHHHH---------HhhhcCcc------hhHHHHHHHHhhc-CCccchhHHHHHHhhhcccCCC-----CCCccH
Q 001349 520 RTF-NEQILH---------IIKDEGTY------SSMHTLLVYLQTA-NHDQCPVVAGLLLQLDLLAEPR-----KMSIYR 577 (1094)
Q Consensus 520 ~~~-~~~~l~---------~i~~~~~~------~~~~~~~~~l~~~-~~~~~~~~a~~l~~l~~~~~~~-----~~~~~r 577 (1094)
... ...++. .+.+.+++ ..+..|+..|+.. .++-+.-+|..|..|-. +... +..+-+
T Consensus 275 e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~a-g~~~~~~~~~~~v~~ 353 (584)
T 3l6x_A 275 EIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCA-GRWTYGRYIRSALRQ 353 (584)
T ss_dssp HSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHS-SCSHHHHHHHHHHTS
T ss_pred cccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHc-CCccccHHHHHHHHH
Confidence 000 000110 01122233 3456678888654 45556678888888854 2211 123345
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHhccc
Q 001349 578 EEAIDTLISCLRNSDYPAAQLAAAKTIVSLQG 609 (1094)
Q Consensus 578 eea~~~~~~~l~~~~~~~~~~~~~~~~~~l~g 609 (1094)
++++..|+..|..++ ..+|..|+.+|.||+-
T Consensus 354 ~~glp~Lv~LL~s~~-~~v~~~A~~aL~nLs~ 384 (584)
T 3l6x_A 354 EKALSAIADLLTNEH-ERVVKAASGALRNLAV 384 (584)
T ss_dssp HHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHT
T ss_pred cCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhC
Confidence 899999999998765 4789999999999874
No 264
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.07 E-value=3.1e-09 Score=131.44 Aligned_cols=302 Identities=13% Similarity=0.102 Sum_probs=207.8
Q ss_pred hHhHHHHHHHHHHHHHhccchHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhccccc----------------
Q 001349 283 NESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDK---------------- 346 (1094)
Q Consensus 283 ~~~e~a~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~---------------- 346 (1094)
+..+.|+..+.-++...+....+. ...+++..++++|- +.+..++..+..+|.|+....+
T Consensus 394 ~v~~~AveaLayLS~~~~vk~~lv---~d~g~Ip~LV~LL~-s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~ 469 (810)
T 3now_A 394 DIRRWAADGLAYLTLDAECKEKLI---EDKASIHALMDLAR-GGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAK 469 (810)
T ss_dssp SHHHHHHHHHHHHTTSHHHHHHHH---HCHHHHHHHHHHHH-TTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTC
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHH---HccchHHHHHHHhC-CCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhh
Confidence 445556555555543332211111 23344555666554 5788999999999999986321
Q ss_pred -------------ch---hhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCCChHHHHHhh---hhHHHHHHHHhc
Q 001349 347 -------------SV---IHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPSTRTLIEMD---MMESLMTVIKKK 403 (1094)
Q Consensus 347 -------------~~---~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~~~~~~~~~---~~~~Ll~~l~~~ 403 (1094)
.+ ++.|... |+++.|+.+|+++ ..+|+.+|++|...++++..+- .+|+|+.+|.++
T Consensus 470 ~~v~~~~~ld~~~~v~~r~~~Vvea-GaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~ 548 (810)
T 3now_A 470 QHIPEEHELDDVDFINKRITVLANE-GITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEG 548 (810)
T ss_dssp CSCCCSSCHHHHHHHHHHHHHHHHT-THHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSS
T ss_pred ccCccccccccHHHHHHHHHHHHHC-cCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccC
Confidence 11 2455544 6999999999998 6789999999987777665554 449999999987
Q ss_pred cccccccccCchhhHHHHHHHHhcCCcccccccchhh-hccchhHHHHHHhhhcc-cHHHHHHHHHHHHHHhhccCcchh
Q 001349 404 EEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANT-IVSSKVFESVISSLEAE-WAEERIAAVGILLRCMQEDGKCRN 481 (1094)
Q Consensus 404 ~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~-~~~~~~~~~~~l~~~~~~~~~~r~ 481 (1094)
+... +..|...|..|..+.+ +..... ....|++|.|++.|..+ +...+..|...|.++...+...|.
T Consensus 549 ~~~~-------k~~Aa~AL~nL~~~~~----p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~ 617 (810)
T 3now_A 549 TEKG-------KRHATQALARIGITIN----PEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQ 617 (810)
T ss_dssp CHHH-------HHHHHHHHHHHHHHSC----HHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CHHH-------HHHHHHHHHHHhcCCC----hhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHH
Confidence 5321 3444445665543321 111110 01247999999999866 556666788888877777678899
Q ss_pred hHhhhcCchhHHHHHHhcCCchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHH
Q 001349 482 SIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLL 561 (1094)
Q Consensus 482 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l 561 (1094)
.+.+++.++++++|+.+.+...+..|.+.|..|...+ ..+.++.. +...++.|+.+++....+-+--+|..|
T Consensus 618 ~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~------~~~~~~v~--~~g~l~~Lv~LL~s~d~~vq~~Aa~AL 689 (810)
T 3now_A 618 RIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSE------DVIKMFEG--NNDRVKFLALLCEDEDEETATACAGAL 689 (810)
T ss_dssp HHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSH------HHHHHHHS--SSSHHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh------HHHHHHHh--ccCcHHHHHHHhcCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999997753 12233332 124677899999887777777888888
Q ss_pred HhhhcccCCCCCCccH-HHHHHHHHHHhhcCCChHHHHHHHHHHHhccc
Q 001349 562 LQLDLLAEPRKMSIYR-EEAIDTLISCLRNSDYPAAQLAAAKTIVSLQG 609 (1094)
Q Consensus 562 ~~l~~~~~~~~~~~~r-eea~~~~~~~l~~~~~~~~~~~~~~~~~~l~g 609 (1094)
..|-.-.+.....+.+ +.+++.|+..|.++ ...+|..|+.++.|+..
T Consensus 690 anLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~-d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 690 AIITSVSVKCCEKILAIASWLDILHTLIANP-SPAVQHRGIVIILNMIN 737 (810)
T ss_dssp HHHHHHCHHHHHHHHTSTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHT
T ss_pred HHHhCCCHHHHHHHHHHcCCHHHHHHHHCCC-CHHHHHHHHHHHHHHHh
Confidence 8887621112223334 78999999988865 45679999999999864
No 265
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=99.06 E-value=5.9e-11 Score=144.99 Aligned_cols=74 Identities=24% Similarity=0.422 Sum_probs=68.2
Q ss_pred CCCCCceeccCccccccCcEEcCCc-ccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHHHHhCCC
Q 001349 158 HTPPKDFVCPITTHIFDDPVTLETG-QTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPG 233 (1094)
Q Consensus 158 ~~~~~~~~CpIc~~~~~dPv~~~cG-htfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~~~~~~ 233 (1094)
.++|++|.|||.+++|+|||++++| +||+|.+|++|+.. +.+||.+|++++...++ ||+.|++.|+.|+..+..
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~li-PN~~Lk~~I~~w~~~~~~ 960 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVT-PNEELRQKILCFKKQKKE 960 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCE-ECHHHHHHHHHHHHHHHT
T ss_pred cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCccccc-ccHHHHHHHHHHHHHHHh
Confidence 5678899999999999999999998 69999999999987 56899999999999997 999999999999987653
No 266
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.05 E-value=1.3e-10 Score=101.34 Aligned_cols=56 Identities=23% Similarity=0.532 Sum_probs=47.5
Q ss_pred CCCceeccCccccccCc---EEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChh
Q 001349 160 PPKDFVCPITTHIFDDP---VTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTN 217 (1094)
Q Consensus 160 ~~~~~~CpIc~~~~~dP---v~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN 217 (1094)
..+++.|+||++.|.+| ++++|||.||+.||.+|+.. +..||.||+.+....+. +|
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~-~~ 70 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNTA-TN 70 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCSC-CC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCcccC-CC
Confidence 34589999999999877 45699999999999999986 46899999999887775 44
No 267
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.03 E-value=4.7e-08 Score=113.35 Aligned_cols=251 Identities=10% Similarity=0.119 Sum_probs=162.9
Q ss_pred CeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEe----------CCCcEEEEECCCCceE-EEEecccCccc
Q 001349 833 GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGS----------LDKTARVWSIGNEEIH-CVQVHDIKDQI 901 (1094)
Q Consensus 833 g~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs----------~DgtI~vWdi~~~~~~-~~~~~~~~~~V 901 (1094)
++|.++|..++ +.+.++.--..+ .++++|||++++++. .+++|.++|..+++.. .+.....+. .
T Consensus 99 ~~VsVID~~t~--~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r-~ 173 (426)
T 3c75_H 99 TQQFVIDGSTG--RILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPR-F 173 (426)
T ss_dssp EEEEEEETTTT--EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC-C
T ss_pred CeEEEEECCCC--EEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccc-c
Confidence 68999999999 777777655555 899999999888876 4678999999998632 222210000 0
Q ss_pred eeeeecCceEEEeeCCCeEEEEEe--CCeEEEEcCCCC--ceEEEE---------eCCEEEEEEcCCeEEEEECCCCcee
Q 001349 902 QNLAVSNSILCFIPQGAGIKVHLR--NGKTKLLNSSKY--PKCLAL---------VQGKVYCGCQDGAIQEIDLATGTFA 968 (1094)
Q Consensus 902 ~~v~~~~~~~~fspdg~~l~~~~~--~g~i~l~~~~~~--v~~l~~---------s~~~l~sgs~Dg~I~iwDl~~~~~~ 968 (1094)
. ....+..+.|+|||+++.+... ++.+.++|.... +..+.. ....+++.+.||.+.+.+..+++..
T Consensus 174 ~-~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~ 252 (426)
T 3c75_H 174 L-VGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETK 252 (426)
T ss_dssp C-BSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCE
T ss_pred c-cCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEE
Confidence 0 0012334559999999999875 478888886432 222222 1234677889999999999666654
Q ss_pred EEeccceeecCCCCCe-EEEEEeCCccEEEEEECCCCEEEEEECCCCeEE--EEecC-----------CCCEEEEEEeCC
Q 001349 969 TIQTGHRKLLGKANPV-HALQVHNGLVYTASTSLDGAAVKMWSTSNYNMV--GSLPT-----------LSEVRAMVVSSE 1034 (1094)
Q Consensus 969 ~~~~~~~~~~~h~~~V-~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~--~~~~~-----------~~~v~~l~~spd 1034 (1094)
.... ..+.....++ ..+.|.+++..++..+..+ .+.+.|....... ..+.. ......++++++
T Consensus 253 ~~~~--~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g-~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~d 329 (426)
T 3c75_H 253 VTNT--EVFHTEDELLINHPAFSLRSGRLVWPTYTG-KIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQ 329 (426)
T ss_dssp EEEC--CCCSCTTSCBCSCCEECTTTCEEEEEBTTS-EEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGG
T ss_pred EEee--eeeccCCCceeeEeeecCCCCEEEEEeCCC-cEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCC
Confidence 2211 0111111121 1345677666555555554 8999998654322 11110 111123678887
Q ss_pred --EEEEEEc----------CCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCC-EEEEEe-CCCcEEEEeCC
Q 001349 1035 --LVYLGCK----------GGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEE-FLVIGT-SDGRIQAWGLS 1094 (1094)
Q Consensus 1035 --~l~sgs~----------dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~-~L~sgs-~DG~I~iWdls 1094 (1094)
.+++... ++.|.++|..+.+.+.++..+. ..++++|+|||+ +++++. .++.|.++|+.
T Consensus 330 g~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~--~P~gia~spDg~~~lyv~n~~s~~VsVID~~ 401 (426)
T 3c75_H 330 SDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH--EIDSINVSQDAEPLLYALSAGTQTLHIYDAA 401 (426)
T ss_dssp GTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred CCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC--CcCeEEEccCCCEEEEEEcCCCCeEEEEECC
Confidence 5555432 3579999999999999996443 589999999999 888888 59999999973
No 268
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.03 E-value=2.1e-07 Score=104.70 Aligned_cols=224 Identities=8% Similarity=-0.005 Sum_probs=139.5
Q ss_pred cEEEEEEeCC---EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEE
Q 001349 815 KVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHC 891 (1094)
Q Consensus 815 ~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~ 891 (1094)
-..+..|+++ +++++..++.|..||..++. . ..+. +...+.+++|+++|+++++. .+ .|.+||..+++...
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~--~-~~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~ 123 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGR--K-TVHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTL 123 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTE--E-EEEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCc--E-EEEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEE
Confidence 3467789984 67777788999999998873 2 2232 35679999999999877754 44 49999998886544
Q ss_pred EEeccc---CccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCcee
Q 001349 892 VQVHDI---KDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFA 968 (1094)
Q Consensus 892 ~~~~~~---~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~ 968 (1094)
+..... ...+..+ .++|+|+..+....+.. ....+.|..+| +++..
T Consensus 124 ~~~~~~~~~~~~~~~i-------~~d~~G~l~v~~~~~~~----------------------~~~~~~l~~~~--~g~~~ 172 (326)
T 2ghs_A 124 HAELESDLPGNRSNDG-------RMHPSGALWIGTMGRKA----------------------ETGAGSIYHVA--KGKVT 172 (326)
T ss_dssp EECSSTTCTTEEEEEE-------EECTTSCEEEEEEETTC----------------------CTTCEEEEEEE--TTEEE
T ss_pred EeeCCCCCCCCCCCCE-------EECCCCCEEEEeCCCcC----------------------CCCceEEEEEe--CCcEE
Confidence 432211 1123333 37777764322111000 00123455555 34332
Q ss_pred EEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECC--CC-e-----EEEEec-CCCCEEEEEEeCC-EEEE
Q 001349 969 TIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTS--NY-N-----MVGSLP-TLSEVRAMVVSSE-LVYL 1038 (1094)
Q Consensus 969 ~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~--~~-~-----~~~~~~-~~~~v~~l~~spd-~l~s 1038 (1094)
... .+......++|++++..+..+...++.|.+||+. ++ . ....+. ....+..++++++ .+++
T Consensus 173 ~~~-------~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwv 245 (326)
T 2ghs_A 173 KLF-------ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWN 245 (326)
T ss_dssp EEE-------EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEE
T ss_pred Eee-------CCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEE
Confidence 111 1123467899999987655554434599999986 55 3 222232 2455788999887 4444
Q ss_pred EE-cCCeEEEEECCCCcEEEEecccCCcceEEEEEc-CCCCEEEEEeC
Q 001349 1039 GC-KGGTVEIWDQKRQIRIETLQTGTSGKVQCMALD-DNEEFLVIGTS 1084 (1094)
Q Consensus 1039 gs-~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~S-pdg~~L~sgs~ 1084 (1094)
+. .++.|.+||. +++.+..+. .+...+++++|+ +|++.|+.++.
T Consensus 246 a~~~~~~v~~~d~-~g~~~~~i~-~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 246 ARWGEGAVDRYDT-DGNHIARYE-VPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EEETTTEEEEECT-TCCEEEEEE-CSCSBEEEEEEESTTSCEEEEEEB
T ss_pred EEeCCCEEEEECC-CCCEEEEEE-CCCCCcEEEEEecCCCCEEEEEec
Confidence 44 5689999998 677777773 455579999998 88887765543
No 269
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.00 E-value=2.4e-09 Score=129.31 Aligned_cols=315 Identities=11% Similarity=0.062 Sum_probs=222.8
Q ss_pred HHHHHHHHhhhccccchHhHHHHHHHHHHHHHhc-cc-hHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhccc
Q 001349 267 TELKHAITSLCMSEILNESEMAVLQIERCWLEAS-ME-LDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSR 344 (1094)
Q Consensus 267 ~~l~~~i~~L~~s~~l~~~e~a~~~i~~~~~~~~-~~-~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~ 344 (1094)
..+..++..|.+. ....+..|+..++++..... +. ..+... .++..++++|..+.++.++..|+.+|.++...
T Consensus 74 ~~l~~lv~~L~s~-~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~----g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~ 148 (528)
T 4b8j_A 74 ESLPAMIGGVYSD-DNNLQLEATTQFRKLLSIERSPPIEEVIQS----GVVPRFVQFLTREDFPQLQFEAAWALTNIASG 148 (528)
T ss_dssp -CHHHHHHHHTSS-CHHHHHHHHHHHHHHHTCSSSCCHHHHHHT----TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCCCchHHHHHHC----CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC
Confidence 4466667777544 34556778888877765433 22 223322 33444666666554589999999999999887
Q ss_pred ccchhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCCC-hHHH---HHhhhhHHHHHHHHhccccccccccCchh
Q 001349 345 DKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPS-TRTL---IEMDMMESLMTVIKKKEEDFLKMCLKPKS 416 (1094)
Q Consensus 345 ~~~~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~-~~~~---~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~ 416 (1094)
+...+..+.. .+.++.|+.+|+.+ ...|+.+|.+|... +... ...+.+|+|+.+|...... .-..
T Consensus 149 ~~~~~~~~~~-~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~------~v~~ 221 (528)
T 4b8j_A 149 TSENTKVVID-HGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKL------SMLR 221 (528)
T ss_dssp CHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCH------HHHH
T ss_pred CHHHHHHHHh-CCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCH------HHHH
Confidence 6767776664 47999999999887 56788899999543 3323 3334569999999543221 1145
Q ss_pred hHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHH
Q 001349 417 VSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESF 496 (1094)
Q Consensus 417 aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~ 496 (1094)
.+...|..|.... .+.......|+++.|+..+..++.+.+..|+.+|..+..........+.+.+.++.|+.+|
T Consensus 222 ~a~~~L~~L~~~~------~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL 295 (528)
T 4b8j_A 222 NATWTLSNFCRGK------PQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 295 (528)
T ss_dssp HHHHHHHHHHCSS------SCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHT
T ss_pred HHHHHHHHHHcCC------CCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHH
Confidence 5666677775433 2223334589999999999999999999999999888776666677888899999999999
Q ss_pred HhcCCchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhc-CCccchhHHHHHHhhhcccCCCCCCc
Q 001349 497 MAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTA-NHDQCPVVAGLLLQLDLLAEPRKMSI 575 (1094)
Q Consensus 497 ~~~~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~-~~~~~~~~a~~l~~l~~~~~~~~~~~ 575 (1094)
...+...+..|+..|..+...+ ....+.+-+.|.++. |+.+|+.. .+.-+.-++..|.+|..-.+.....+
T Consensus 296 ~~~~~~v~~~a~~~L~nl~~~~-----~~~~~~~~~~~~l~~---L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~ 367 (528)
T 4b8j_A 296 LHPSPSVLIPALRTVGNIVTGD-----DAQTQCIIDHQALPC---LLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAV 367 (528)
T ss_dssp TCSCHHHHHHHHHHHHHHTTSC-----HHHHHHHHTTTHHHH---HHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred cCCChhHHHHHHHHHHHHHcCC-----HHHHHHHHHhhhHHH---HHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9988888889999999997653 223334445555554 77888776 66777788888988875222222344
Q ss_pred cHHHHHHHHHHHhhcCCChHHHHHHHHHHHhcc
Q 001349 576 YREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQ 608 (1094)
Q Consensus 576 ~reea~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 608 (1094)
+..+.++.|+..|.++ ...+|..|+.+|.+++
T Consensus 368 ~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~ 399 (528)
T 4b8j_A 368 INAGIIGPLVNLLQTA-EFDIKKEAAWAISNAT 399 (528)
T ss_dssp HHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHH
Confidence 5567889999999877 4578999999999976
No 270
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.00 E-value=2.8e-07 Score=107.25 Aligned_cols=235 Identities=12% Similarity=0.072 Sum_probs=151.0
Q ss_pred CcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCC--cEEEEECCCCce
Q 001349 814 GKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDK--TARVWSIGNEEI 889 (1094)
Q Consensus 814 ~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~Dg--tI~vWdi~~~~~ 889 (1094)
.....++|+++ ++++...++.|++||..++ ........ ..... ++|+++++.|+++..++ .|.+|+..++..
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g--~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDN--KVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTT--EEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCC--EEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce
Confidence 46889999986 5556666799999999987 33333332 33334 99999999999998876 788888776532
Q ss_pred -EEEEec-c-cCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCc
Q 001349 890 -HCVQVH-D-IKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGT 966 (1094)
Q Consensus 890 -~~~~~~-~-~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~ 966 (1094)
...... . ....+.+++ ++|++ +.|+++..++.|+.||..++.
T Consensus 207 ~~~~g~~~~~~~~~p~~ia-------v~p~~----------------------------g~lyv~d~~~~I~~~d~~~~~ 251 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVA-------LDETE----------------------------EWLYFVDSNKNFGRFNVKTQE 251 (409)
T ss_dssp EEEEEECCTTSCSCCCBCE-------ECTTS----------------------------SEEEEECTTCEEEEEETTTCC
T ss_pred eEEeeeccchhcCCcEEEE-------EeCCC----------------------------CeEEEEECCCcEEEEECCCCC
Confidence 111000 1 112222232 55522 245566677889999998776
Q ss_pred eeEEeccceeecCCCCC--eEEEEEeCC-ccEEEEEECCCCEEEEEECCCCeEEEEec-C---------------CCCEE
Q 001349 967 FATIQTGHRKLLGKANP--VHALQVHNG-LVYTASTSLDGAAVKMWSTSNYNMVGSLP-T---------------LSEVR 1027 (1094)
Q Consensus 967 ~~~~~~~~~~~~~h~~~--V~sl~fs~~-~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~---------------~~~v~ 1027 (1094)
...... . ...++... ...++|+|+ +.+.++-..+ +.|+.||.... +..+. + -....
T Consensus 252 ~~~~~~-~-~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~-~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~ 326 (409)
T 3hrp_A 252 VTLIKQ-L-ELSGSLGTNPGPYLIYYFVDSNFYMSDQNL-SSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPN 326 (409)
T ss_dssp EEEEEE-C-CCCSCCCCSSCCEEEEETTTTEEEEEETTT-TEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEE
T ss_pred EEEEec-c-cccCCCCCCccccEEEeCCCCEEEEEeCCC-CEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCe
Confidence 432200 0 01122222 238999994 6555555444 59999997643 22222 1 13488
Q ss_pred EEEEeCC--EEEEEE-cCCeEEEEECCCCcEEEEecccC---------------CcceEEEEEcCCCCEEEEEeCCCcEE
Q 001349 1028 AMVVSSE--LVYLGC-KGGTVEIWDQKRQIRIETLQTGT---------------SGKVQCMALDDNEEFLVIGTSDGRIQ 1089 (1094)
Q Consensus 1028 ~l~~spd--~l~sgs-~dg~I~vwd~~t~~~~~~l~~~h---------------~~~I~~l~~Spdg~~L~sgs~DG~I~ 1089 (1094)
.++++++ ++++-+ .++.|+.||..++... ++ .++ -.....++++++|.++++-..+++|+
T Consensus 327 gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~-~~-~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir 404 (409)
T 3hrp_A 327 GMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS-TV-AGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIR 404 (409)
T ss_dssp EEEECTTCCEEEEETTTTCEEEEEETTTTEEE-EE-EECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEE
T ss_pred EEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE-EE-eCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEE
Confidence 9999998 444455 6889999998887643 33 233 23689999999998888888889999
Q ss_pred EEeCC
Q 001349 1090 AWGLS 1094 (1094)
Q Consensus 1090 iWdls 1094 (1094)
.+++.
T Consensus 405 ~i~~e 409 (409)
T 3hrp_A 405 KYAVE 409 (409)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 88763
No 271
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.99 E-value=4.4e-08 Score=113.60 Aligned_cols=268 Identities=12% Similarity=0.079 Sum_probs=168.1
Q ss_pred ccCcEEEEeeC-C----CCeEEEeCCc--ceeecccCCCcEEEEEEeCC--EEEEEE----------CCCeEEEEecCCC
Q 001349 783 FEMVKVLSNGH-D----SSADFWNHRE--LVHVDSSENGKVLSIACFRD--KIFSGH----------SDGTIKVWTGRGS 843 (1094)
Q Consensus 783 ~d~~~l~s~s~-d----g~I~vWd~~~--~~~~~~~h~~~V~~l~fspd--~LaSgs----------~Dg~I~vWd~~t~ 843 (1094)
+++.+++.... + +.|.++|..+ .+..+.....+ .++++|| +++.+. .++.|.++|..++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 45665444433 2 6899999873 23333322334 8999997 454443 4789999999998
Q ss_pred cceeEEEeccc-------CCCeEEEEEecCCCEEEEEeC--CCcEEEEECCCCceEEEEecccCccceeeee--cCceEE
Q 001349 844 ILHLIQQIREH-------TKAVTGLAILQSGEMLYSGSL--DKTARVWSIGNEEIHCVQVHDIKDQIQNLAV--SNSILC 912 (1094)
Q Consensus 844 ~~~~~~~l~~H-------~~~V~sv~fspdg~~LaSgs~--DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~--~~~~~~ 912 (1094)
+.+.++.-. ......+.|+|||++++++.. +++|.+.|+.+++.. ........+ .+.. ....+.
T Consensus 160 --~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv--~~I~v~g~~-~~~p~g~~~~v~ 234 (426)
T 3c75_H 160 --LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFD--RMLDVPDCY-HIFPASPTVFYM 234 (426)
T ss_dssp --CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEE--EEEECCSEE-EEEEEETTEEEE
T ss_pred --cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEE--EEEEcCCce-eeccCCCcEEEE
Confidence 566665321 233467899999999999874 578999999998632 222211110 0100 011244
Q ss_pred EeeCCCeEEEEEeCCeEE-----EEcCCCCc--eEEEEe--CCEEEEEEcCCeEEEEECCCCceeEEeccceeec-----
Q 001349 913 FIPQGAGIKVHLRNGKTK-----LLNSSKYP--KCLALV--QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLL----- 978 (1094)
Q Consensus 913 fspdg~~l~~~~~~g~i~-----l~~~~~~v--~~l~~s--~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~----- 978 (1094)
++++|+.+.+...++.+. +++..... ..+.+. ++.++..+..+.|.+.|...+....... ..+.
T Consensus 235 ~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~--~~~~~~~~i 312 (426)
T 3c75_H 235 NCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAP--IEALTEAER 312 (426)
T ss_dssp EETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCC--EESSCTTTG
T ss_pred EcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeee--eeecccccc
Confidence 777887776666555443 22222211 112233 3566667788999999987655331110 0000
Q ss_pred --C-CCCCeEEEEEeCCccEEEEEECC---------CCEEEEEECCCCeEEEEecCCCCEEEEEEeCC---EEEEEE-cC
Q 001349 979 --G-KANPVHALQVHNGLVYTASTSLD---------GAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE---LVYLGC-KG 1042 (1094)
Q Consensus 979 --~-h~~~V~sl~fs~~~~~las~s~D---------g~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd---~l~sgs-~d 1042 (1094)
+ .......+.+++++..+.....+ ++.|.++|..+++.+.++.-+....++.|+|| .+++.. .+
T Consensus 313 ~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s 392 (426)
T 3c75_H 313 ADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGT 392 (426)
T ss_dssp GGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTT
T ss_pred ccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCC
Confidence 0 00112236788886654443211 13799999999999999986667899999987 677777 58
Q ss_pred CeEEEEECCCCcEEEEe
Q 001349 1043 GTVEIWDQKRQIRIETL 1059 (1094)
Q Consensus 1043 g~I~vwd~~t~~~~~~l 1059 (1094)
+.|.|+|..+++.+.++
T Consensus 393 ~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 393 QTLHIYDAATGEELRSV 409 (426)
T ss_dssp TEEEEEETTTCCEEEEE
T ss_pred CeEEEEECCCCCEEEEe
Confidence 99999999999999987
No 272
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.98 E-value=3.9e-08 Score=122.79 Aligned_cols=241 Identities=13% Similarity=0.125 Sum_probs=147.6
Q ss_pred cCCCcEEEEEEeCC--EEE-EEE----CCCeEEEEecCCCcceeEE-EecccCCCeEEEEEecCCCEEEEEeCCCc----
Q 001349 811 SENGKVLSIACFRD--KIF-SGH----SDGTIKVWTGRGSILHLIQ-QIREHTKAVTGLAILQSGEMLYSGSLDKT---- 878 (1094)
Q Consensus 811 ~h~~~V~~l~fspd--~La-Sgs----~Dg~I~vWd~~t~~~~~~~-~l~~H~~~V~sv~fspdg~~LaSgs~Dgt---- 878 (1094)
+|...+..++|||| +|+ +.+ .+.+|++||+.+++ .+. .+.+. ....++|+ ||+.|+.++.|..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~--~~~~~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~ 200 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQ--PLETPLKDV--KFSGISWL-GNEGFFYSSYDKPDGSE 200 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCS--EEEEEEEEE--ESCCCEEE-TTTEEEEEESSCCC---
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCC--CCccccCCc--eeccEEEe-CCCEEEEEEecCccccc
Confidence 46678999999997 555 333 33579999999994 332 22211 13568899 9999999988754
Q ss_pred ---------EEEEECCCCce--EEEEecc--cCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC
Q 001349 879 ---------ARVWSIGNEEI--HCVQVHD--IKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ 945 (1094)
Q Consensus 879 ---------I~vWdi~~~~~--~~~~~~~--~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~ 945 (1094)
|++|++.++.. ..+.... +...+.++. |+|||+.+++....+
T Consensus 201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~-------~SpDg~~l~~~~~~~------------------ 255 (693)
T 3iuj_A 201 LSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGAT-------VTEDDRFLLISAANS------------------ 255 (693)
T ss_dssp ----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEE-------ECTTSCEEEEEEESS------------------
T ss_pred ccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEE-------EcCCCCEEEEEEccC------------------
Confidence 99999988652 2222221 122334444 899999765433221
Q ss_pred CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCC--CEEEEEECCCCeE---EEEe
Q 001349 946 GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG--AAVKMWSTSNYNM---VGSL 1020 (1094)
Q Consensus 946 ~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg--~~I~iwd~~~~~~---~~~~ 1020 (1094)
+.++.|.+||+.++.... ..+..+.........++++.+++.+..++ ..|..||+.++.. ..-.
T Consensus 256 ------~~~~~i~~~d~~~~~~~~-----~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~ 324 (693)
T 3iuj_A 256 ------TSGNRLYVKDLSQENAPL-----LTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI 324 (693)
T ss_dssp ------SSCCEEEEEETTSTTCCC-----EEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE
T ss_pred ------CCCcEEEEEECCCCCCce-----EEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe
Confidence 123588999988763110 23334444555543344444545544432 4899999987654 2223
Q ss_pred cCCCCEEEEEEeCCEEEEEE-cCC--eEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCC----CcEEEEeC
Q 001349 1021 PTLSEVRAMVVSSELVYLGC-KGG--TVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSD----GRIQAWGL 1093 (1094)
Q Consensus 1021 ~~~~~v~~l~~spd~l~sgs-~dg--~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~D----G~I~iWdl 1093 (1094)
.+...+..+....+.++... .++ .|++||+..+ ....+...+.+.+..+.++++++.++....+ ++|+.||+
T Consensus 325 ~~~~~~~~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~ 403 (693)
T 3iuj_A 325 PERQQVLTVHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEP 403 (693)
T ss_dssp CCCSSCEEEEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred cCCCCEEEEEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEEC
Confidence 34433335555555655554 454 6899998854 4455543455678888889998876655444 78888886
No 273
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.98 E-value=3.2e-08 Score=124.61 Aligned_cols=237 Identities=11% Similarity=0.025 Sum_probs=147.1
Q ss_pred ccccccccCcEEEEeeCC-----CCeEEEeCCcceee-cccCCCcEEEEEEeCC-EEEEEECCCe--------------E
Q 001349 777 KYSPLAFEMVKVLSNGHD-----SSADFWNHRELVHV-DSSENGKVLSIACFRD-KIFSGHSDGT--------------I 835 (1094)
Q Consensus 777 ~~~~~~~d~~~l~s~s~d-----g~I~vWd~~~~~~~-~~~h~~~V~~l~fspd-~LaSgs~Dg~--------------I 835 (1094)
....+++||++++.++.+ ..|++||..+.... ...+...+..++|+|| .|+.++.|+. |
T Consensus 166 ~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v 245 (741)
T 1yr2_A 166 DAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTV 245 (741)
T ss_dssp EEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTTSEEEEEECCCC--------CCCCCEE
T ss_pred EeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECCCEEEEEEecCcccccccccCCCCCEE
Confidence 345678899999887654 45999998743221 1112222357899997 7777766554 8
Q ss_pred EEEecCCCcce--eEEEecccCCCeEEEEEecCCCEEEEEeCCC-----cEEEEECCCC--c-eEEEEecccCccceeee
Q 001349 836 KVWTGRGSILH--LIQQIREHTKAVTGLAILQSGEMLYSGSLDK-----TARVWSIGNE--E-IHCVQVHDIKDQIQNLA 905 (1094)
Q Consensus 836 ~vWd~~t~~~~--~~~~l~~H~~~V~sv~fspdg~~LaSgs~Dg-----tI~vWdi~~~--~-~~~~~~~~~~~~V~~v~ 905 (1094)
++|++.++... .+.....|...+..+.|||||++|+..+.++ .|++||+.++ + ...+.. ....+...
T Consensus 246 ~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~--~~~~~~~~- 322 (741)
T 1yr2_A 246 WLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIP--DLKAQWDF- 322 (741)
T ss_dssp EEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEEC--SSSSCEEE-
T ss_pred EEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecC--CCCceEEE-
Confidence 99999877422 3333334445689999999999998887654 7999999876 3 333322 12222211
Q ss_pred ecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCc-eeEEeccceeecCCCCCe
Q 001349 906 VSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGT-FATIQTGHRKLLGKANPV 984 (1094)
Q Consensus 906 ~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~-~~~~~~~~~~~~~h~~~V 984 (1094)
++|+|+.+++.+..+ ..++.|.+||+.++. ... ..+..+...+
T Consensus 323 -------~~~dg~~l~~~s~~~------------------------~~~~~l~~~d~~~~~~~~~-----~l~~~~~~~l 366 (741)
T 1yr2_A 323 -------VDGVGDQLWFVSGDG------------------------APLKKIVRVDLSGSTPRFD-----TVVPESKDNL 366 (741)
T ss_dssp -------EEEETTEEEEEECTT------------------------CTTCEEEEEECSSSSCEEE-----EEECCCSSEE
T ss_pred -------EeccCCEEEEEECCC------------------------CCCCEEEEEeCCCCccccE-----EEecCCCCeE
Confidence 346666543322111 124568999988752 221 1222334456
Q ss_pred EEEEEeCCccEEEEEECCCCEEEEEECC-CCeEEEEec--CCCCEEEEEEeCC---EEEEEE---cCCeEEEEECCCCc
Q 001349 985 HALQVHNGLVYTASTSLDGAAVKMWSTS-NYNMVGSLP--TLSEVRAMVVSSE---LVYLGC---KGGTVEIWDQKRQI 1054 (1094)
Q Consensus 985 ~sl~fs~~~~~las~s~Dg~~I~iwd~~-~~~~~~~~~--~~~~v~~l~~spd---~l~sgs---~dg~I~vwd~~t~~ 1054 (1094)
..+.++ ++.++++...|+ ..+||.+. ++.....+. +...+..+.++++ .+++.+ ..++|++||+.+++
T Consensus 367 ~~~~~~-~~~lv~~~~~dg-~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 367 ESVGIA-GNRLFASYIHDA-KSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEEE-BTEEEEEEEETT-EEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEEE-CCEEEEEEEECC-EEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 677887 455666766675 66666544 455666665 3567888999887 333333 34789999998876
No 274
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.98 E-value=1.1e-10 Score=94.45 Aligned_cols=46 Identities=15% Similarity=0.153 Sum_probs=40.5
Q ss_pred CceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCC
Q 001349 162 KDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSST 211 (1094)
Q Consensus 162 ~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~ 211 (1094)
+++.||||++.|.+|++++|||+||+.||..| ...||.||+.+...
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLG 50 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCC
T ss_pred cCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeecC
Confidence 47999999999999999999999999999872 45799999987643
No 275
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.97 E-value=8.8e-08 Score=118.89 Aligned_cols=274 Identities=10% Similarity=0.034 Sum_probs=166.3
Q ss_pred ccccCcEEEEeeCCCCeEEEeCCcc--eeecccC-C----CcEE-EEEEeCCEEEEEEC------CCeEEEEecCCCcce
Q 001349 781 LAFEMVKVLSNGHDSSADFWNHREL--VHVDSSE-N----GKVL-SIACFRDKIFSGHS------DGTIKVWTGRGSILH 846 (1094)
Q Consensus 781 ~~~d~~~l~s~s~dg~I~vWd~~~~--~~~~~~h-~----~~V~-~l~fspd~LaSgs~------Dg~I~vWd~~t~~~~ 846 (1094)
...++.+++.++.|+.+..+|..+. +.....+ . ..+. ......+.++.++. +|.|+.||..++ +
T Consensus 124 ~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG--~ 201 (677)
T 1kb0_A 124 VALWKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETG--E 201 (677)
T ss_dssp CEEETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTC--C
T ss_pred ceEECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCC--c
Confidence 3446778889999999999998632 2222222 1 1111 12233466666654 799999999999 6
Q ss_pred eEEEecccCC--------------------------------CeEEEEEecCCCEEEEEeCCC-----------------
Q 001349 847 LIQQIREHTK--------------------------------AVTGLAILQSGEMLYSGSLDK----------------- 877 (1094)
Q Consensus 847 ~~~~l~~H~~--------------------------------~V~sv~fspdg~~LaSgs~Dg----------------- 877 (1094)
.+..+..... ....++++|++..++.++.++
T Consensus 202 ~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~ 281 (677)
T 1kb0_A 202 RKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLY 281 (677)
T ss_dssp EEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTT
T ss_pred EEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCee
Confidence 6666543211 113578899999999888764
Q ss_pred --cEEEEECCCCceEEEEec-ccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcC
Q 001349 878 --TARVWSIGNEEIHCVQVH-DIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQD 954 (1094)
Q Consensus 878 --tI~vWdi~~~~~~~~~~~-~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~D 954 (1094)
+|..+|..+|+..-.... .+...-......+.......+|+.. +.+++++.+
T Consensus 282 ~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~-------------------------~~l~~~~~~ 336 (677)
T 1kb0_A 282 LASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPR-------------------------KVILHAPKN 336 (677)
T ss_dssp TTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEE-------------------------EEEEECCTT
T ss_pred eEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEe-------------------------eEEEEECCC
Confidence 488899998863322221 1111100000000000011122100 137788889
Q ss_pred CeEEEEECCCCceeEEeccce-----eecCCCC------------------------CeEEEEEeCCccEEEEEECC---
Q 001349 955 GAIQEIDLATGTFATIQTGHR-----KLLGKAN------------------------PVHALQVHNGLVYTASTSLD--- 1002 (1094)
Q Consensus 955 g~I~iwDl~~~~~~~~~~~~~-----~~~~h~~------------------------~V~sl~fs~~~~~las~s~D--- 1002 (1094)
|.++++|..+|+.+....... .+..... .-..++|+|+..++.....+
T Consensus 337 G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~ 416 (677)
T 1kb0_A 337 GFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPV 416 (677)
T ss_dssp SEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCC
T ss_pred CEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcce
Confidence 999999999998875432110 0000000 01256788765555443221
Q ss_pred ---------------------------------------CCEEEEEECCCCeEEEEecCCCCEEEE--EEeCCEEEEEEc
Q 001349 1003 ---------------------------------------GAAVKMWSTSNYNMVGSLPTLSEVRAM--VVSSELVYLGCK 1041 (1094)
Q Consensus 1003 ---------------------------------------g~~I~iwd~~~~~~~~~~~~~~~v~~l--~~spd~l~sgs~ 1041 (1094)
.+.|..||+.+++.+..+.+...+.+. ....+.+++++.
T Consensus 417 ~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~ 496 (677)
T 1kb0_A 417 NLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTA 496 (677)
T ss_dssp EEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECT
T ss_pred eeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECC
Confidence 148999999999999988865444333 334458888999
Q ss_pred CCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEE
Q 001349 1042 GGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVI 1081 (1094)
Q Consensus 1042 dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~s 1081 (1094)
||.+++||..+|+.+..+..++.....-+.|..+|+.+++
T Consensus 497 dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 497 DGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp TSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 9999999999999999997666545556677788875543
No 276
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=98.97 E-value=6.2e-09 Score=128.89 Aligned_cols=311 Identities=14% Similarity=0.049 Sum_probs=213.3
Q ss_pred HHHHHHhhhccccchHhHHHHHHHHHHHHHhccchHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccch
Q 001349 269 LKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSV 348 (1094)
Q Consensus 269 l~~~i~~L~~s~~l~~~e~a~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~ 348 (1094)
+...+..|...+..+.++.|+..+..+++..+....+. ...++..++++|- +.++.+++.++.+|.++....+..
T Consensus 58 i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~----~~g~i~~Lv~lL~-~~~~~v~~~A~~aL~nL~~~~~~~ 132 (644)
T 2z6h_A 58 VSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIF----KSGGIPALVKMLG-SPVDSVLFYAITTLHNLLLHQEGA 132 (644)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHH----TTTHHHHHHHHTT-CSSHHHHHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHH----HcCCHHHHHHHHh-CCCHHHHHHHHHHHHHHHhCcchh
Confidence 44455555544444556677777776665433112222 2344555666554 467999999999999997766555
Q ss_pred hhhhccCCCcHHHHHHHHhcCh----HHHHHHHHhcCC-ChHHHHHh---hhhHHHHHHHHhccccccccccCchhhHHH
Q 001349 349 IHTLTRVESDVERIVALFKKGL----LEAVVLIDLLRP-STRTLIEM---DMMESLMTVIKKKEEDFLKMCLKPKSVSVL 420 (1094)
Q Consensus 349 ~~~i~~~~~~~~~L~~lLk~g~----~~Aa~~l~~L~~-~~~~~~~~---~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~ 420 (1094)
+..+. ..+.++.|+.+|+.+. ..|+.+|.+|.. .++++..+ +.++.|+++|+...... -..++..
T Consensus 133 ~~~v~-~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~------~~~~a~~ 205 (644)
T 2z6h_A 133 KMAVR-LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEK------LLWTTSR 205 (644)
T ss_dssp HHHHH-HTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHH------HHHHHHH
T ss_pred HHHHH-HCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHH------HHHHHHH
Confidence 55554 4578999999999872 233447888875 56665444 45599999998764221 1234555
Q ss_pred HHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhcC
Q 001349 421 LLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAAS 500 (1094)
Q Consensus 421 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~ 500 (1094)
+|..| +.+.+++..+++.|+++.|++.++.++.+-+..++.+|.++...... .......++.|+.++.+.+
T Consensus 206 ~L~nL------s~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~---~~~~~~~i~~Lv~lL~~~d 276 (644)
T 2z6h_A 206 VLKVL------SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK---QEGMEGLLGTLVQLLGSDD 276 (644)
T ss_dssp HHHHH------TTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTT---CCSCHHHHHHHHHHTTCSC
T ss_pred HHHHH------hcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchh---hhhhhhHHHHHHHHHcCCC
Confidence 56655 34567899999999999999999999999999999998877654322 1223356888999999888
Q ss_pred CchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcC--CccchhHHHHHHhhhcccCCC----CCC
Q 001349 501 DGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTAN--HDQCPVVAGLLLQLDLLAEPR----KMS 574 (1094)
Q Consensus 501 ~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~--~~~~~~~a~~l~~l~~~~~~~----~~~ 574 (1094)
...+..|...|..|...+. ...+.+.+.|.+.. |+.+|+..+ ++-+.-++..|.+|-.- .+. +..
T Consensus 277 ~~v~~~a~~aL~~L~~~~~-----~~~~~v~~~g~v~~---Lv~lL~~~~~~~~v~~~a~~aL~nL~~~-~~~~~~~q~~ 347 (644)
T 2z6h_A 277 INVVTCAAGILSNLTCNNY-----KNKMMVCQVGGIEA---LVRTVLRAGDREDITEPAICALRHLTSR-HQEAEMAQNA 347 (644)
T ss_dssp HHHHHHHHHHHHHHHTTCH-----HHHHHHHHTTHHHH---HHHHHHHHTTCHHHHHHHHHHHHHHTSS-STTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCH-----HHHHHHHHcCCHHH---HHHHHHccCCcHHHHHHHHHHHHHHhcC-CchHHHHHHH
Confidence 8888889999999876532 22344455665554 777787654 35556677888887431 111 122
Q ss_pred ccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhccc
Q 001349 575 IYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQG 609 (1094)
Q Consensus 575 ~~reea~~~~~~~l~~~~~~~~~~~~~~~~~~l~g 609 (1094)
+...++++.|+..|.+.....++..|+.+|.|++.
T Consensus 348 v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~ 382 (644)
T 2z6h_A 348 VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 382 (644)
T ss_dssp HHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred HHHccChHHHHHHhCccCchHHHHHHHHHHHHHcc
Confidence 33457899999999988767889999999999985
No 277
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.97 E-value=1.8e-09 Score=116.22 Aligned_cols=237 Identities=14% Similarity=0.149 Sum_probs=181.8
Q ss_pred cHHHHHHHHhcC----hHHHHHHHHhcCCCh-HHHHHh---hhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCC
Q 001349 358 DVERIVALFKKG----LLEAVVLIDLLRPST-RTLIEM---DMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDS 429 (1094)
Q Consensus 358 ~~~~L~~lLk~g----~~~Aa~~l~~L~~~~-~~~~~~---~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~ 429 (1094)
.++.|+.+|+++ ..+|+..|.+|...+ ++...+ +.+|+|+.+|..++.. -+..|...|..|..
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~-------v~~~a~~~L~~l~~-- 73 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSE-------VQKEAARALANIAS-- 73 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHH-------HHHHHHHHHHHHTT--
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHH-------HHHHHHHHHHHHHc--
Confidence 578888889887 567888888885433 344443 4569999999876422 25566667777732
Q ss_pred cccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHH
Q 001349 430 EESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVC 509 (1094)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 509 (1094)
.+.+++..+...|+++.|+..++.++.+-+..|+.+|.++...+..++..+.+.+.++++++++.+.+...+..++.
T Consensus 74 ---~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~ 150 (252)
T 4hxt_A 74 ---GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAAR 150 (252)
T ss_dssp ---SCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHH
T ss_pred ---CChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHH
Confidence 23678889999999999999999999999999999999888888889999999999999999999988888999999
Q ss_pred HHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhh
Q 001349 510 FLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLR 589 (1094)
Q Consensus 510 ~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~~~~~reea~~~~~~~l~ 589 (1094)
.|..+...+ ....+.+.+.|.++. |+.++++..++-+.-++..|.+|-.-.+.....+...++++.|+..+.
T Consensus 151 ~L~~l~~~~-----~~~~~~~~~~~~i~~---L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~ 222 (252)
T 4hxt_A 151 ALANIASGP-----DEAIKAIVDAGGVEV---LVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLT 222 (252)
T ss_dssp HHHHHTTSC-----HHHHHHHHHTTHHHH---HHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGG
T ss_pred HHHHHHcCC-----HHHHHHHHHCcCHHH---HHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHC
Confidence 999997652 222344455665555 888888777777888888998887622223334456778999999998
Q ss_pred cCCChHHHHHHHHHHHhcccccccCC
Q 001349 590 NSDYPAAQLAAAKTIVSLQGRFTTSG 615 (1094)
Q Consensus 590 ~~~~~~~~~~~~~~~~~l~g~~s~~g 615 (1094)
++ .+.+|..|+.+|.+|........
T Consensus 223 ~~-~~~v~~~a~~~L~~l~~~~~~~~ 247 (252)
T 4hxt_A 223 ST-DSEVQKEAQRALENIKSGGWLEH 247 (252)
T ss_dssp CS-CHHHHHHHHHHHHHHHHTCBCCC
T ss_pred CC-cHHHHHHHHHHHHHHHcCCCccc
Confidence 65 45789999999999987655443
No 278
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.96 E-value=7.5e-09 Score=111.37 Aligned_cols=229 Identities=15% Similarity=0.168 Sum_probs=172.8
Q ss_pred hhhHhhhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCCC-hHHHHHh
Q 001349 316 NGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPS-TRTLIEM 390 (1094)
Q Consensus 316 ~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~-~~~~~~~ 390 (1094)
..+++.|- +.++.++..|+.+|.++...++.++..+.+ .+.++.|+.+|+.+ ...|+.+|.+|... +++...+
T Consensus 5 ~~L~~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 5 EKLVKLLT-STDSETQKEAARDLAEIASGPASAIKAIVD-AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHTT-CSCHHHHHHHHHHHHHHHTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHHHHHHHHhcCCcHHHHHHHH-CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 33455554 456899999999999998777767777774 56899999999987 67888899999876 5555444
Q ss_pred ---hhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHH
Q 001349 391 ---DMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVG 467 (1094)
Q Consensus 391 ---~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 467 (1094)
+.+|+|+.+|..++.. -+..|..+|..|.. .+.+++..+...|+++.|++.++.++.+.+..|+.
T Consensus 83 ~~~~~i~~l~~ll~~~~~~-------v~~~a~~~L~~l~~-----~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~ 150 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTSTDSE-------VQKEAARALANIAS-----GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAAR 150 (252)
T ss_dssp HHTTHHHHHHHHTTCSSHH-------HHHHHHHHHHHHTT-----SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHcCCCHH-------HHHHHHHHHHHHHc-----CCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHH
Confidence 5669999999865422 25667777877732 34578888999999999999999999999999999
Q ss_pred HHHHHhhccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHh
Q 001349 468 ILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQ 547 (1094)
Q Consensus 468 ~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~ 547 (1094)
+|.++...+...+..+.+.+.++.++.++.+.+...+..|+..|..+...+ ....+.+.+.|.+.. |+.+++
T Consensus 151 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-----~~~~~~l~~~~~i~~---L~~ll~ 222 (252)
T 4hxt_A 151 ALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-----TSAIKAIVDAGGVEV---LQKLLT 222 (252)
T ss_dssp HHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSB-----HHHHHHHHHTTHHHH---HHHGGG
T ss_pred HHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-----HHHHHHHHHCCCHHH---HHHHHC
Confidence 998888777778888999999999999999888888889999999997642 233455556665554 666665
Q ss_pred hcCCccchhHHHHHHhhhc
Q 001349 548 TANHDQCPVVAGLLLQLDL 566 (1094)
Q Consensus 548 ~~~~~~~~~~a~~l~~l~~ 566 (1094)
...++-+..++..|.+|--
T Consensus 223 ~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 223 STDSEVQKEAQRALENIKS 241 (252)
T ss_dssp CSCHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHc
Confidence 5444444445555544444
No 279
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.96 E-value=1.2e-07 Score=117.78 Aligned_cols=294 Identities=11% Similarity=0.085 Sum_probs=169.1
Q ss_pred cCcEEEEeeCCCCeEEEeCCccee--ecccCCC----------c-EEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEE
Q 001349 784 EMVKVLSNGHDSSADFWNHRELVH--VDSSENG----------K-VLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQ 850 (1094)
Q Consensus 784 d~~~l~s~s~dg~I~vWd~~~~~~--~~~~h~~----------~-V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~ 850 (1094)
.+..++.++.++.|.-+|..+... ....+.. . -..+++..+.++.++.||.|..||..+| +.+..
T Consensus 69 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG--~~~W~ 146 (689)
T 1yiq_A 69 VDGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTG--QRAWS 146 (689)
T ss_dssp ETTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTC--CEEEE
T ss_pred ECCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCC--CEeee
Confidence 455667777788888888753222 2111111 0 1234556679999999999999999999 56666
Q ss_pred ecc--cCCCeEEEEEec---CCCEEEEEe------CCCcEEEEECCCCceEEEEecccCccce-----------------
Q 001349 851 IRE--HTKAVTGLAILQ---SGEMLYSGS------LDKTARVWSIGNEEIHCVQVHDIKDQIQ----------------- 902 (1094)
Q Consensus 851 l~~--H~~~V~sv~fsp---dg~~LaSgs------~DgtI~vWdi~~~~~~~~~~~~~~~~V~----------------- 902 (1094)
+.. +......+..+| ++. ++.++ .||.|+.||..+|+..-........+..
T Consensus 147 ~~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 225 (689)
T 1yiq_A 147 VDTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGD 225 (689)
T ss_dssp EECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSS
T ss_pred ecCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCc
Confidence 543 211111122222 444 44443 3789999999999743222110000000
Q ss_pred ------eeeecCceEEEeeCCCeEEEEEeCCe-------------------EEEEcCCCC--ce----------------
Q 001349 903 ------NLAVSNSILCFIPQGAGIKVHLRNGK-------------------TKLLNSSKY--PK---------------- 939 (1094)
Q Consensus 903 ------~v~~~~~~~~fspdg~~l~~~~~~g~-------------------i~l~~~~~~--v~---------------- 939 (1094)
.-...-....+.|++..+.+...++. +..++.... +.
T Consensus 226 ~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~ 305 (689)
T 1yiq_A 226 AYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQ 305 (689)
T ss_dssp THHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCS
T ss_pred eeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCC
Confidence 00000012346666665555554432 444432110 00
Q ss_pred -EEEEe---CC----EEEEEEcCCeEEEEECCCCceeEEeccce-----e-----------------ecCCC--------
Q 001349 940 -CLALV---QG----KVYCGCQDGAIQEIDLATGTFATIQTGHR-----K-----------------LLGKA-------- 981 (1094)
Q Consensus 940 -~l~~s---~~----~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~-----~-----------------~~~h~-------- 981 (1094)
.+... ++ .++.++.+|.++++|..+|+.+....... . +....
T Consensus 306 ~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~ 385 (689)
T 1yiq_A 306 HMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAF 385 (689)
T ss_dssp CEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCT
T ss_pred CcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCc
Confidence 01111 23 47888999999999999999873221100 0 00000
Q ss_pred ---CCeEEEEEeCCccEEEEEECC--------------------------------------------CCEEEEEECCCC
Q 001349 982 ---NPVHALQVHNGLVYTASTSLD--------------------------------------------GAAVKMWSTSNY 1014 (1094)
Q Consensus 982 ---~~V~sl~fs~~~~~las~s~D--------------------------------------------g~~I~iwd~~~~ 1014 (1094)
..-..++|+|+..++.....+ .+.|+.||+.++
T Consensus 386 ~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG 465 (689)
T 1yiq_A 386 WGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQ 465 (689)
T ss_dssp TCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTT
T ss_pred ccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCC
Confidence 011236777765555443211 138999999999
Q ss_pred eEEEEecCCCCEE--EEEEeCCEEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEE
Q 001349 1015 NMVGSLPTLSEVR--AMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLV 1080 (1094)
Q Consensus 1015 ~~~~~~~~~~~v~--~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~ 1080 (1094)
+.+..+.++.... .+....+.+++|+.||.|+.||..+|+.+..+..++.....-+.|..||+..+
T Consensus 466 ~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 466 QAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp EEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEE
Confidence 9999887544333 33444558999999999999999999999998655544445577788887443
No 280
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.95 E-value=4e-10 Score=95.34 Aligned_cols=47 Identities=23% Similarity=0.464 Sum_probs=42.1
Q ss_pred ceeccCccccccCc-EEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCC
Q 001349 163 DFVCPITTHIFDDP-VTLETGQTYERRAIQEWIERGNSSCPITRQKLSS 210 (1094)
Q Consensus 163 ~~~CpIc~~~~~dP-v~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~ 210 (1094)
+..||||++.+.+| ++++|||+||+.||.+|+.. ...||.||+.+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred CCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence 67899999999997 67899999999999999987 4589999998763
No 281
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.95 E-value=1.2e-07 Score=105.27 Aligned_cols=230 Identities=6% Similarity=0.030 Sum_probs=145.4
Q ss_pred cccccCcEEEE-------eeCCCCeEEEeCCc-ceeecc-----cCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCc
Q 001349 780 PLAFEMVKVLS-------NGHDSSADFWNHRE-LVHVDS-----SENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI 844 (1094)
Q Consensus 780 ~~~~d~~~l~s-------~s~dg~I~vWd~~~-~~~~~~-----~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~ 844 (1094)
.+..++..+++ +..++.|.+||... ....+. ++...+.+++++++ .++.++.++.|.+||.. +.
T Consensus 24 ~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~ 102 (314)
T 1pjx_A 24 VFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD-GT 102 (314)
T ss_dssp EECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT-SC
T ss_pred eECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEEEEeCC-CC
Confidence 34456776666 57788999999652 222222 25577999999986 66666666689999998 63
Q ss_pred ceeEEE-ec----ccCCCeEEEEEecCCCEEEEEeCC---------------CcEEEEECCCCceEEEEecccCccceee
Q 001349 845 LHLIQQ-IR----EHTKAVTGLAILQSGEMLYSGSLD---------------KTARVWSIGNEEIHCVQVHDIKDQIQNL 904 (1094)
Q Consensus 845 ~~~~~~-l~----~H~~~V~sv~fspdg~~LaSgs~D---------------gtI~vWdi~~~~~~~~~~~~~~~~V~~v 904 (1094)
.... .. .+...+.+++++++|+++++...+ +.|..||.. ++...... .......
T Consensus 103 --~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~--~~~~~~~- 176 (314)
T 1pjx_A 103 --FEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT--AFQFPNG- 176 (314)
T ss_dssp --EEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE--EESSEEE-
T ss_pred --EEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc--CCCCcce-
Confidence 3222 11 122458899999999988877665 456666655 43222111 0111122
Q ss_pred eecCceEEEe----eCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEE-EcCCeEEEEECC-CCceeEEeccceeec
Q 001349 905 AVSNSILCFI----PQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCG-CQDGAIQEIDLA-TGTFATIQTGHRKLL 978 (1094)
Q Consensus 905 ~~~~~~~~fs----pdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sg-s~Dg~I~iwDl~-~~~~~~~~~~~~~~~ 978 (1094)
++++ |+|+. ++++ ..++.|.+||+. ++..... .....+.
T Consensus 177 ------i~~~~~~d~dg~~----------------------------l~v~~~~~~~i~~~~~~~~g~~~~~-~~~~~~~ 221 (314)
T 1pjx_A 177 ------IAVRHMNDGRPYQ----------------------------LIVAETPTKKLWSYDIKGPAKIENK-KVWGHIP 221 (314)
T ss_dssp ------EEEEECTTSCEEE----------------------------EEEEETTTTEEEEEEEEETTEEEEE-EEEEECC
T ss_pred ------EEEecccCCCCCE----------------------------EEEEECCCCeEEEEECCCCCccccc-eEEEECC
Confidence 2255 55543 3333 456788888876 3432110 0001222
Q ss_pred CCC-CCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEE-cCCeEEEEECCC
Q 001349 979 GKA-NPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGC-KGGTVEIWDQKR 1052 (1094)
Q Consensus 979 ~h~-~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs-~dg~I~vwd~~t 1052 (1094)
++. ..+..+++++++.+.++...++ .|.+||..+++.+..+. +...+.+++++++ .+++++ .++.|..|++..
T Consensus 222 ~~~~~~p~~i~~d~~G~l~v~~~~~~-~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 222 GTHEGGADGMDFDEDNNLLVANWGSS-HIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp CCSSCEEEEEEEBTTCCEEEEEETTT-EEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCCCCCCceEECCCCCEEEEEcCCC-EEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 333 4578899999988888776665 89999998777766666 4477999999887 466655 468899999864
No 282
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.95 E-value=9.9e-08 Score=106.21 Aligned_cols=248 Identities=8% Similarity=0.021 Sum_probs=150.4
Q ss_pred ccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 001349 810 SSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGN 886 (1094)
Q Consensus 810 ~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~ 886 (1094)
..+........|+++ +++++..++.|..|+. ++. ...+..+...+..++++++|+++++...++.|.+|+.+
T Consensus 41 ~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~---~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~- 115 (305)
T 3dr2_A 41 YDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT---VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD- 115 (305)
T ss_dssp ECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC---EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred ecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC---EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-
Confidence 334456678899985 6788888999999998 442 34455567789999999999977766667889999986
Q ss_pred CceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCc
Q 001349 887 EEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGT 966 (1094)
Q Consensus 887 ~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~ 966 (1094)
++...+......... ..+..+++.++|+..++-...|...-+.... .......+.|..||..+++
T Consensus 116 g~~~~~~~~~~~~~~----~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~-----------~~~~~~~~~v~~~d~~~g~ 180 (305)
T 3dr2_A 116 GQAHLLVGRYAGKRL----NSPNDLIVARDGAIWFTDPPFGLRKPSQGCP-----------ADPELAHHSVYRLPPDGSP 180 (305)
T ss_dssp SCEEEEECEETTEEC----SCCCCEEECTTSCEEEECCSGGGSCGGGSCC-----------CCCSSSCEEEEEECSSSCC
T ss_pred CCEEEEEeccCCCcc----CCCCCEEECCCCCEEEeCcCCCccccccccc-----------cccccCCCeEEEEcCCCCc
Confidence 543333221111000 1122344777776433210000000000000 0000012467778877776
Q ss_pred eeEEeccceeecCCCCCeEEEEEeCCccEEEEEECC-----CCEEEEEECCCCeEE--EEec--CCCCEEEEEEeCC-EE
Q 001349 967 FATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLD-----GAAVKMWSTSNYNMV--GSLP--TLSEVRAMVVSSE-LV 1036 (1094)
Q Consensus 967 ~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~D-----g~~I~iwd~~~~~~~--~~~~--~~~~v~~l~~spd-~l 1036 (1094)
..... .....+.++|++++..+..+... .+.|.+||+..+... ..+. ....+..++++++ .+
T Consensus 181 ~~~~~--------~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~l 252 (305)
T 3dr2_A 181 LQRMA--------DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWL 252 (305)
T ss_dssp CEEEE--------EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCE
T ss_pred EEEEe--------cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCE
Confidence 54321 12356789999999866665544 148999998765421 1111 2344567888887 56
Q ss_pred EEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEE
Q 001349 1037 YLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQ 1089 (1094)
Q Consensus 1037 ~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~ 1089 (1094)
++++.+ .|.+||. .++.+..+. .+. .+.+++|+++++.|+.++.++..+
T Consensus 253 wv~~~~-gv~~~~~-~g~~~~~~~-~~~-~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 253 WSSSGT-GVCVFDS-DGQLLGHIP-TPG-TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp EECCSS-EEEEECT-TSCEEEEEE-CSS-CCCEEEECTTSCEEEEEETTEEEE
T ss_pred EEecCC-cEEEECC-CCCEEEEEE-CCC-ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 666654 5999998 577777774 233 589999999999998888765433
No 283
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.93 E-value=1.9e-08 Score=115.07 Aligned_cols=177 Identities=7% Similarity=0.006 Sum_probs=126.1
Q ss_pred cccccccccCcEEEEeeCCCCeEEEeCCcce------------eecccCCCcEEEEEEeCCEEEEEECCCeEEEEecCCC
Q 001349 776 RKYSPLAFEMVKVLSNGHDSSADFWNHRELV------------HVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGS 843 (1094)
Q Consensus 776 ~~~~~~~~d~~~l~s~s~dg~I~vWd~~~~~------------~~~~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~ 843 (1094)
.....++.....+++|+.++. .+|+.+... .....+.+ |+.++|..++|+++ .+|.|++||+.+.
T Consensus 40 ~nlLais~~~gll~a~~~~~l-~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~fd~~~L~v~-~~~~l~v~dv~sl 116 (388)
T 1xip_A 40 LQNLDISNSKSLFVAASGSKA-VVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCFHGDQVLVS-TRNALYSLDLEEL 116 (388)
T ss_dssp CBCEEEETTTTEEEEEETTEE-EEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEEETTEEEEE-ESSEEEEEESSST
T ss_pred ccEEEEcCCCCEEEEeCCCEE-EEEEhhHhhhhhccccccccceEEeeCCC-eeEEEECCCEEEEE-cCCcEEEEEchhh
Confidence 344556667888999998854 569876222 12334667 99999944588888 8899999999876
Q ss_pred cceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEE
Q 001349 844 ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVH 923 (1094)
Q Consensus 844 ~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~ 923 (1094)
........|...|.++.+.+. .+++++.||+|.+||+.++.... ....
T Consensus 117 --~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-----~~~~----------------------- 164 (388)
T 1xip_A 117 --SEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-----LAQN----------------------- 164 (388)
T ss_dssp --TCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-----EEES-----------------------
T ss_pred --hccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-----ccCC-----------------------
Confidence 344556678888998887754 38899999999999999865321 1223
Q ss_pred EeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCce--eEEeccceeec---CCCCCeEEEEEeCCccEEEE
Q 001349 924 LRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTF--ATIQTGHRKLL---GKANPVHALQVHNGLVYTAS 998 (1094)
Q Consensus 924 ~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~--~~~~~~~~~~~---~h~~~V~sl~fs~~~~~las 998 (1094)
|+|++|++..++.|..||++++|+...+.. ...+.....+. +|...|.++.|.+++.++++
T Consensus 165 --------------Vs~v~WSpkG~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 165 --------------VTSFDVTNSQLAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp --------------EEEEEECSSEEEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred --------------ceEEEEcCCceEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 344445544467789999999999887774 43332222223 47789999999999999988
Q ss_pred EEC
Q 001349 999 TSL 1001 (1094)
Q Consensus 999 ~s~ 1001 (1094)
...
T Consensus 231 y~~ 233 (388)
T 1xip_A 231 FGN 233 (388)
T ss_dssp EEC
T ss_pred EcC
Confidence 654
No 284
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.93 E-value=6e-10 Score=89.91 Aligned_cols=46 Identities=24% Similarity=0.429 Sum_probs=41.6
Q ss_pred ceeccCccccccC----cEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCC
Q 001349 163 DFVCPITTHIFDD----PVTLETGQTYERRAIQEWIERGNSSCPITRQKLS 209 (1094)
Q Consensus 163 ~~~CpIc~~~~~d----Pv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~ 209 (1094)
+..||||++.|.+ +++++|||.||..||.+|+... ..||.||+.+.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 6889999999977 7889999999999999999985 68999998765
No 285
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.93 E-value=9.9e-09 Score=123.97 Aligned_cols=299 Identities=10% Similarity=0.089 Sum_probs=213.8
Q ss_pred hHhHHHHHHHHHHHHHhccc-hHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHHH
Q 001349 283 NESEMAVLQIERCWLEASME-LDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVER 361 (1094)
Q Consensus 283 ~~~e~a~~~i~~~~~~~~~~-~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~ 361 (1094)
..++.|+..+..++....+. ..+.. ..++..++.+|- +.+..+++.|+.+|.++.......+..+.. .+.++.
T Consensus 146 ~v~~~A~~~L~~l~~~~~~~~~~~~~----~g~i~~Lv~lL~-~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~-~~~l~~ 219 (530)
T 1wa5_B 146 MLQLEAAWALTNIASGTSAQTKVVVD----ADAVPLFIQLLY-TGSVEVKEQAIWALGNVAGDSTDYRDYVLQ-CNAMEP 219 (530)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHH----TTCHHHHHHHHH-HCCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHH----CCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhCCCccchHHHHH-cCcHHH
Confidence 34566666666665433222 22222 223343455444 468999999999999997665556665554 578999
Q ss_pred HHHHHhcC----hHHHHHHHHhcC----CChHHHHHhhhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccc
Q 001349 362 IVALFKKG----LLEAVVLIDLLR----PSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESI 433 (1094)
Q Consensus 362 L~~lLk~g----~~~Aa~~l~~L~----~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~ 433 (1094)
|+.+|+.. ...|+.+|.+|. +.......-+.+|.|+.+|..++.. -...|+..|..|....
T Consensus 220 L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~-------v~~~a~~~L~~L~~~~---- 288 (530)
T 1wa5_B 220 ILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTE-------TLVDACWAISYLSDGP---- 288 (530)
T ss_dssp HHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHH-------HHHHHHHHHHHHHSSC----
T ss_pred HHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHH-------HHHHHHHHHHHHhCCC----
Confidence 99999876 456778898885 3334444455669999999765321 1455666677774332
Q ss_pred cccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHH
Q 001349 434 VSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSE 513 (1094)
Q Consensus 434 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~e 513 (1094)
.+....++..|+++.|+..+..++...+..|+.+|..+...+......+.+.+.+++++.+|.+.....|..|+.+|..
T Consensus 289 -~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~ 367 (530)
T 1wa5_B 289 -QEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISN 367 (530)
T ss_dssp -HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3456677888999999999999999999999999988887777777788888999999999998877788889999998
Q ss_pred HHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCC--C-CCCccHHHHHHHHHHHhhc
Q 001349 514 LVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEP--R-KMSIYREEAIDTLISCLRN 590 (1094)
Q Consensus 514 l~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~--~-~~~~~reea~~~~~~~l~~ 590 (1094)
+...+. ...+.+-+.|.++. |+.+|+...++-+-.++..|.+|-.-.++ . ...+...++++.|+..|..
T Consensus 368 l~~~~~-----~~~~~~~~~~~l~~---L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~ 439 (530)
T 1wa5_B 368 ITAGNT-----EQIQAVIDANLIPP---LVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEI 439 (530)
T ss_dssp HTTSCH-----HHHHHHHHTTCHHH---HHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTT
T ss_pred HHcCCH-----HHHHHHHHCCCHHH---HHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhC
Confidence 876422 22333445555554 88888888888888999999999775544 1 1223355689999999987
Q ss_pred CCChHHHHHHHHHHHhcc
Q 001349 591 SDYPAAQLAAAKTIVSLQ 608 (1094)
Q Consensus 591 ~~~~~~~~~~~~~~~~l~ 608 (1094)
. .+.++..|+.+|.++.
T Consensus 440 ~-~~~v~~~al~aL~~l~ 456 (530)
T 1wa5_B 440 A-DNRIIEVTLDALENIL 456 (530)
T ss_dssp C-CHHHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHHH
Confidence 5 5678999999998875
No 286
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.93 E-value=1.5e-08 Score=122.31 Aligned_cols=300 Identities=13% Similarity=0.101 Sum_probs=214.2
Q ss_pred chHhHHHHHHHHHHHHHhccc-hHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHH
Q 001349 282 LNESEMAVLQIERCWLEASME-LDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVE 360 (1094)
Q Consensus 282 l~~~e~a~~~i~~~~~~~~~~-~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~ 360 (1094)
...++.|+..+..++....++ ..+.. ..++..++.+|. +.+..+++.|+.+|.++......++..+.. .+.++
T Consensus 132 ~~v~~~A~~~L~~l~~~~~~~~~~~~~----~g~i~~L~~lL~-~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~-~g~l~ 205 (528)
T 4b8j_A 132 PQLQFEAAWALTNIASGTSENTKVVID----HGAVPIFVKLLG-SSSDDVREQAVWALGNVAGDSPKCRDLVLA-NGALL 205 (528)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHH----TTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHHTCHHHHHHHHH-TTCHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHh----CCcHHHHHHHhc-CCCHHHHHHHHHHHHHHhCCChhhHHHHHH-CCcHH
Confidence 344567777777776543332 22222 233444555444 468899999999999997666656666664 47899
Q ss_pred HHHHHHhc-C----hHHHHHHHHhcCCC---hHHHHHhhhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCccc
Q 001349 361 RIVALFKK-G----LLEAVVLIDLLRPS---TRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEES 432 (1094)
Q Consensus 361 ~L~~lLk~-g----~~~Aa~~l~~L~~~---~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~ 432 (1094)
.|+.+|+. . ...|+.+|.+|... ......-+.+|.|+.+|...+.. -...++..|..|..+.
T Consensus 206 ~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~-------v~~~a~~aL~~l~~~~--- 275 (528)
T 4b8j_A 206 PLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEE-------VLTDACWALSYLSDGT--- 275 (528)
T ss_dssp HHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHH-------HHHHHHHHHHHHTSSC---
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHH-------HHHHHHHHHHHHHcCC---
Confidence 99999954 3 56788899988433 33333445559999999765322 1455666677774332
Q ss_pred ccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhc-CCchhHHHHHHH
Q 001349 433 IVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAA-SDGERFEIVCFL 511 (1094)
Q Consensus 433 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~l 511 (1094)
......++..|+++.|+..+..++...+..|+.+|..+...+...+..+.+.+.++.|+.+|.+. ....+..|+..|
T Consensus 276 --~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L 353 (528)
T 4b8j_A 276 --NDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTI 353 (528)
T ss_dssp --HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred --HHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 23345677889999999999999999999999999988887788888888999999999999988 777888899999
Q ss_pred HHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCC-ccHHHHHHHHHHHhhc
Q 001349 512 SELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMS-IYREEAIDTLISCLRN 590 (1094)
Q Consensus 512 ~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~~~-~~reea~~~~~~~l~~ 590 (1094)
..+...+ ....+.+-+.|.++ .|+..|+...++-+.-++..|.+|-.-+++.... +...++++.|+..|..
T Consensus 354 ~nl~~~~-----~~~~~~~~~~~~i~---~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~ 425 (528)
T 4b8j_A 354 SNITAGN-----KDQIQAVINAGIIG---PLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLIC 425 (528)
T ss_dssp HHHHTSC-----HHHHHHHHHTTCHH---HHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC
T ss_pred HHHHCCC-----HHHHHHHHHCCCHH---HHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcC
Confidence 9987642 23334444455544 4888888888888889999999987754443222 2245788999999987
Q ss_pred CCChHHHHHHHHHHHhcc
Q 001349 591 SDYPAAQLAAAKTIVSLQ 608 (1094)
Q Consensus 591 ~~~~~~~~~~~~~~~~l~ 608 (1094)
.+ ..++..++.+|.++.
T Consensus 426 ~d-~~v~~~al~~L~~l~ 442 (528)
T 4b8j_A 426 PD-IRIVTVCLEGLENIL 442 (528)
T ss_dssp SC-HHHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHHH
Confidence 54 577889999998874
No 287
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.92 E-value=1.3e-08 Score=119.75 Aligned_cols=302 Identities=13% Similarity=0.083 Sum_probs=210.7
Q ss_pred cchHhHHHHHHHHHHHHHhccchHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHH
Q 001349 281 ILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVE 360 (1094)
Q Consensus 281 ~l~~~e~a~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~ 360 (1094)
....+..|+..+..++....++... .....++..++++|- +.++.+++.|+.+|.++.......+..+.. .+.++
T Consensus 78 ~~~v~~~a~~~L~~l~~~~~~~~~~---~~~~~~i~~L~~lL~-~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~-~~~i~ 152 (450)
T 2jdq_A 78 NCTLQFESAWVLTNIASGNSLQTRI---VIQAGAVPIFIELLS-SEFEDVQEQAVWALGNIAGDSTMCRDYVLD-CNILP 152 (450)
T ss_dssp CHHHHHHHHHHHHHHHSSCHHHHHH---HHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHH
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHH---HHhCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHccCCHHHHHHHHH-CCCHH
Confidence 3343556666666665432222111 112334444555544 568999999999999998776655655553 56899
Q ss_pred HHHHHHhc-C----hHHHHHHHHhcCCC----hHHHHHhhhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcc
Q 001349 361 RIVALFKK-G----LLEAVVLIDLLRPS----TRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEE 431 (1094)
Q Consensus 361 ~L~~lLk~-g----~~~Aa~~l~~L~~~----~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~ 431 (1094)
.|+.+|+. . ...|+.+|.+|... ......-+.+|+|+.+|..++.. -...+...|..|...
T Consensus 153 ~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~-------v~~~a~~~L~~l~~~--- 222 (450)
T 2jdq_A 153 PLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTD-------VLADACWALSYLSDG--- 222 (450)
T ss_dssp HHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHH-------HHHHHHHHHHHHTSS---
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHH-------HHHHHHHHHHHHHCC---
Confidence 99999986 3 56778888888532 22222245569999999865321 134555566666332
Q ss_pred cccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHHH
Q 001349 432 SIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFL 511 (1094)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 511 (1094)
..++...++..|+++.|+..+..++.+.+..|+.+|..+...+...+..+.+.+.++.++.++.+.+...|..|+..|
T Consensus 223 --~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L 300 (450)
T 2jdq_A 223 --PNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTI 300 (450)
T ss_dssp --SHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred --CcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHH
Confidence 234566777889999999999999999999999999888777777777788888999999999988778888899999
Q ss_pred HHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCC-CccHHHHHHHHHHHhhc
Q 001349 512 SELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKM-SIYREEAIDTLISCLRN 590 (1094)
Q Consensus 512 ~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~~-~~~reea~~~~~~~l~~ 590 (1094)
..+...+ ....+.+-+.|.+ ..|+..|+...++-+.-++..|.+|..-.+|... .+..++.++.|+..|..
T Consensus 301 ~~l~~~~-----~~~~~~~~~~~~l---~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~ 372 (450)
T 2jdq_A 301 SNITAGN-----RAQIQTVIDANIF---PALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTV 372 (450)
T ss_dssp HHHTTSC-----HHHHHHHHHTTHH---HHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGS
T ss_pred HHHHcCC-----HHHHHHHHHCCCH---HHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcC
Confidence 9887642 2223334444444 4588888888888888899999999764343222 23356789999999987
Q ss_pred CCChHHHHHHHHHHHhcc
Q 001349 591 SDYPAAQLAAAKTIVSLQ 608 (1094)
Q Consensus 591 ~~~~~~~~~~~~~~~~l~ 608 (1094)
+ ...++..|+.+|.++.
T Consensus 373 ~-~~~v~~~a~~aL~~l~ 389 (450)
T 2jdq_A 373 M-DSKIVQVALNGLENIL 389 (450)
T ss_dssp S-CHHHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHHH
Confidence 6 4678999999998875
No 288
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=98.91 E-value=5.2e-09 Score=110.76 Aligned_cols=186 Identities=12% Similarity=0.116 Sum_probs=139.3
Q ss_pred hhHhhhccCCch--HHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCC-ChHHHHH
Q 001349 317 GFVEILFNSVDP--RVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRP-STRTLIE 389 (1094)
Q Consensus 317 ~~v~~L~~s~~~--~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~-~~~~~~~ 389 (1094)
.+|+.|.. .++ +++..|...|.++...++.++..|... |.+|.|+.+|+++ ..+|+.+|.+|.. .++|+..
T Consensus 12 ~lV~lL~s-~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~-G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~ 89 (233)
T 3tt9_A 12 RAVSMLEA-DHMLPSRISAAATFIQHECFQKSEARKRVNQL-RGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE 89 (233)
T ss_dssp HHHHTCCS-SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHT-THHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhCC-CCchHHHHHHHHHHHHHHHcCCcHHHHHHHHc-CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 35555544 455 888889999999977777788888754 6899999999998 5688899999976 6788877
Q ss_pred hhhh---HHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhh---cc------
Q 001349 390 MDMM---ESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLE---AE------ 457 (1094)
Q Consensus 390 ~~~~---~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~---~~------ 457 (1094)
|... |+|+++|+...... -+..|..+|-.| +...+++..|++ ++|+.|++.+- .|
T Consensus 90 I~~~GaI~~Lv~lL~~~~~~~------~~e~a~~aL~nL------S~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~ 156 (233)
T 3tt9_A 90 VAELNGVPRLLQVLKQTRDLE------TKKQITGLLWNL------SSNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDY 156 (233)
T ss_dssp HHHTTHHHHHHHHHHHCCCHH------HHHHHHHHHHHH------HTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGC
T ss_pred HHHcCCHHHHHHHHccCCCHH------HHHHHHHHHHHH------HcChhhHHHHHh-ccHHHHHHHHhccccCCccccc
Confidence 7654 99999998632111 134444445555 455677888886 57999998763 33
Q ss_pred -------cHHHHHHHHHHHHHHhhccCcchhhHhhhc-CchhHHHHHHhc------CCchhHHHHHHHHHHHhc
Q 001349 458 -------WAEERIAAVGILLRCMQEDGKCRNSIADKA-ELAPVMESFMAA------SDGERFEIVCFLSELVKL 517 (1094)
Q Consensus 458 -------~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~-~~~~~~~l~~~~------~~~~~~~~~~~l~el~~~ 517 (1094)
+.+-+.+|+.+|..+...+...|..|.+.. -+++|++++++. +++..++|+..|..|...
T Consensus 157 ~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 157 PKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred ccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 457788898888766556668999999875 569999999984 456678999999988553
No 289
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=98.91 E-value=1.5e-08 Score=121.94 Aligned_cols=311 Identities=13% Similarity=0.044 Sum_probs=210.7
Q ss_pred HHHHHHhhhccccchHhHHHHHHHHHHHHHhccchHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccch
Q 001349 269 LKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSV 348 (1094)
Q Consensus 269 l~~~i~~L~~s~~l~~~e~a~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~ 348 (1094)
+...+..|..++..+.++.++..+..++...+....+.. .+++..++++|- +.++.+++.++.+|.++...++..
T Consensus 61 i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~----~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~ 135 (529)
T 1jdh_A 61 VSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFK----SGGIPALVKMLG-SPVDSVLFYAITTLHNLLLHQEGA 135 (529)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHH----TTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHHHCTTH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHH----cCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCcch
Confidence 344444454433334456677777776554332122332 234444555544 567899999999999997765555
Q ss_pred hhhhccCCCcHHHHHHHHhcCh----HHHHHHHHhcCC-ChHHHHHh---hhhHHHHHHHHhccccccccccCchhhHHH
Q 001349 349 IHTLTRVESDVERIVALFKKGL----LEAVVLIDLLRP-STRTLIEM---DMMESLMTVIKKKEEDFLKMCLKPKSVSVL 420 (1094)
Q Consensus 349 ~~~i~~~~~~~~~L~~lLk~g~----~~Aa~~l~~L~~-~~~~~~~~---~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~ 420 (1094)
+..+. ..+.++.|+.+|+.+. ..|+.+|.+|.. .+++...+ +.++.|+++|+.+.... ...++..
T Consensus 136 ~~~i~-~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~------~~~~a~~ 208 (529)
T 1jdh_A 136 KMAVR-LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEK------LLWTTSR 208 (529)
T ss_dssp HHHHH-HHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHH------HHHHHHH
T ss_pred HHHHH-HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHH------HHHHHHH
Confidence 55554 4568999999999872 344558888865 34554443 45699999999864221 1345555
Q ss_pred HHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhcC
Q 001349 421 LLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAAS 500 (1094)
Q Consensus 421 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~ 500 (1094)
+|..| +.++.++..++..|+++.|++.++.++.+-+..++.+|.++...... .....+.++++++++.+.+
T Consensus 209 ~L~~l------~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~---~~~~~~~i~~L~~ll~~~~ 279 (529)
T 1jdh_A 209 VLKVL------SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK---QEGMEGLLGTLVQLLGSDD 279 (529)
T ss_dssp HHHHH------TTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTT---CSCCHHHHHHHHHHTTCSC
T ss_pred HHHHH------hcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChh---hHHHHhHHHHHHHHHcCCC
Confidence 66655 34567889999999999999999999999999999988877654422 1223456889999998888
Q ss_pred CchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcC--CccchhHHHHHHhhhcccCCC----CCC
Q 001349 501 DGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTAN--HDQCPVVAGLLLQLDLLAEPR----KMS 574 (1094)
Q Consensus 501 ~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~--~~~~~~~a~~l~~l~~~~~~~----~~~ 574 (1094)
...+..|...|..|...+ ....+.+.+.|.+.. |+..|+..+ ++-+.-++..|..|-. .+|. +..
T Consensus 280 ~~v~~~a~~~L~~L~~~~-----~~~~~~~~~~~~v~~---L~~ll~~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~~~~ 350 (529)
T 1jdh_A 280 INVVTCAAGILSNLTCNN-----YKNKMMVCQVGGIEA---LVRTVLRAGDREDITEPAICALRHLTS-RHQEAEMAQNA 350 (529)
T ss_dssp HHHHHHHHHHHHHHTTTC-----HHHHHHHHHTTHHHH---HHHHHHHHTTCHHHHHHHHHHHHHHTS-SSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCC-----HHHHHHHHHcCChHH---HHHHHHccCCHHHHHHHHHHHHHHHHc-CCchHHHHHHH
Confidence 888989999999996642 223344556665554 777776543 3445567778888743 2232 223
Q ss_pred ccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhccc
Q 001349 575 IYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQG 609 (1094)
Q Consensus 575 ~~reea~~~~~~~l~~~~~~~~~~~~~~~~~~l~g 609 (1094)
+...++++.|+..|..+....++..++.+|.+++.
T Consensus 351 i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~ 385 (529)
T 1jdh_A 351 VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 385 (529)
T ss_dssp HHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred HHHcCChhHHHHHhccccchHHHHHHHHHHHHHhc
Confidence 44557899999999987766889999999999884
No 290
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=1.1e-09 Score=94.25 Aligned_cols=53 Identities=15% Similarity=0.385 Sum_probs=44.4
Q ss_pred CCCCceeccCccccccCcEEc---CCcccccHHhHHHHHHhCCCCCCCCCcCCCCCC
Q 001349 159 TPPKDFVCPITTHIFDDPVTL---ETGQTYERRAIQEWIERGNSSCPITRQKLSSTK 212 (1094)
Q Consensus 159 ~~~~~~~CpIc~~~~~dPv~~---~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~ 212 (1094)
+..++..|+||++.|.+|..+ +|||.||+.||.+|+.. +..||.||+.+....
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSSCC
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCccccccc
Confidence 345588999999999987654 99999999999999998 448999999876543
No 291
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=2.8e-10 Score=96.92 Aligned_cols=52 Identities=21% Similarity=0.507 Sum_probs=45.5
Q ss_pred CCCCceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCC
Q 001349 159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTK 212 (1094)
Q Consensus 159 ~~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~ 212 (1094)
.+.+++.||||++.+.+ ++++|||+||+.||.+|+.. ...||.||+.+....
T Consensus 11 ~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR-HRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC-CSSCHHHHHCTTCCC
T ss_pred cCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC-cCcCCCcCCcccCCC
Confidence 34558999999999999 99999999999999999985 668999999887554
No 292
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.91 E-value=5.7e-10 Score=90.02 Aligned_cols=48 Identities=19% Similarity=0.535 Sum_probs=42.2
Q ss_pred CCceeccCccccccC---cEEcC-CcccccHHhHHHHHHhCCCCCCCCCcCCC
Q 001349 161 PKDFVCPITTHIFDD---PVTLE-TGQTYERRAIQEWIERGNSSCPITRQKLS 209 (1094)
Q Consensus 161 ~~~~~CpIc~~~~~d---Pv~~~-cGhtfc~~ci~~~~~~~~~~CP~c~~~~~ 209 (1094)
.++..|+||++.|.+ ++.++ |||.||..||.+|+.. +..||.||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 447899999999998 78886 9999999999999987 568999998764
No 293
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.90 E-value=1.4e-09 Score=92.24 Aligned_cols=50 Identities=22% Similarity=0.525 Sum_probs=42.6
Q ss_pred CCceeccCcccccc---CcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCC
Q 001349 161 PKDFVCPITTHIFD---DPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSST 211 (1094)
Q Consensus 161 ~~~~~CpIc~~~~~---dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~ 211 (1094)
..+..|+||++.|. ++++++|||.||+.||.+|+.. +..||.||+.+...
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEAQ 64 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCSC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccCc
Confidence 34789999999885 4677999999999999999998 45799999988653
No 294
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.89 E-value=6.3e-09 Score=112.33 Aligned_cols=224 Identities=13% Similarity=0.145 Sum_probs=167.7
Q ss_pred hHhhhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCC-ChHHHHHh--
Q 001349 318 FVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRP-STRTLIEM-- 390 (1094)
Q Consensus 318 ~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~-~~~~~~~~-- 390 (1094)
+++.| .|.+.+++..|...|.++.+.+...+..+.. .+.++.|+.+|+.+ ...|+.+|.+|.. .+++...+
T Consensus 17 ~~~~L-~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 94 (252)
T 4db8_A 17 MTQQL-NSDDMQEQLSATRKFSQILSDGNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 94 (252)
T ss_dssp HHHHH-HSSCSSHHHHHHHHHHHHHHHHHHHHHHHHH-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHH-cCCCHHHHHHHHHHHHHHHcCCCchHHHHHH-cCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 44444 4578889999999998887776666777764 46899999999987 5678889999986 56555444
Q ss_pred -hhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccch-hhhccchhHHHHHHhhhcccHHHHHHHHHH
Q 001349 391 -DMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIA-NTIVSSKVFESVISSLEAEWAEERIAAVGI 468 (1094)
Q Consensus 391 -~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 468 (1094)
+.+|+|+.+|..++.. -+..|+..|.+| +.+..++ ..++..|+++.|++.++.++.+.+..|+.+
T Consensus 95 ~g~i~~L~~lL~~~~~~-------v~~~a~~~L~~l------~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~ 161 (252)
T 4db8_A 95 AGALPALVQLLSSPNEQ-------ILQEALWALSNI------ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA 161 (252)
T ss_dssp TTHHHHHHHGGGCSCHH-------HHHHHHHHHHHH------TTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred cCCHHHHHHHHcCCCHH-------HHHHHHHHHHHh------hcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHH
Confidence 3559999999885422 256677778777 3344555 788999999999999999999999999999
Q ss_pred HHHHhhccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhh
Q 001349 469 LLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQT 548 (1094)
Q Consensus 469 l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~ 548 (1094)
|.++...+...+..+.+.+.++++++++.+.+...+..|+..|..+...+ ....+.+.+.|.+.. |+..++.
T Consensus 162 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-----~~~~~~~~~~g~i~~---L~~ll~~ 233 (252)
T 4db8_A 162 LSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-----NEQKQAVKEAGALEK---LEQLQSH 233 (252)
T ss_dssp HHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSC-----HHHHHHHHHTTHHHH---HHTTTTC
T ss_pred HHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCC-----HHHHHHHHHCCcHHH---HHHHhCC
Confidence 98888777788888999999999999999888888889999999997542 233344555665554 6666655
Q ss_pred cCCccchhHHHHHHhh
Q 001349 549 ANHDQCPVVAGLLLQL 564 (1094)
Q Consensus 549 ~~~~~~~~~a~~l~~l 564 (1094)
..++-+--++..|.+|
T Consensus 234 ~~~~v~~~A~~~L~~l 249 (252)
T 4db8_A 234 ENEKIQKEAQEALEKL 249 (252)
T ss_dssp SSSHHHHTHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHH
Confidence 5554444445444443
No 295
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=98.89 E-value=1.7e-08 Score=127.32 Aligned_cols=311 Identities=14% Similarity=0.051 Sum_probs=210.9
Q ss_pred HHHHHHhhhccccchHhHHHHHHHHHHHHHhccchHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccch
Q 001349 269 LKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSV 348 (1094)
Q Consensus 269 l~~~i~~L~~s~~l~~~e~a~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~ 348 (1094)
+..++..|...+....++.|+..+..++........+.. ..++..++++|- +.++.+++.|+.+|.++.......
T Consensus 194 i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~----~g~I~~Lv~lL~-~~~~~v~~~A~~aL~nLa~~~~~~ 268 (780)
T 2z6g_A 194 VSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFK----SGGIPALVNMLG-SPVDSVLFHAITTLHNLLLHQEGA 268 (780)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHH----TTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHH----cCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhCCChhh
Confidence 344444454443444466777777776654322122332 234555555554 457999999999999997665555
Q ss_pred hhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCC-ChHHHHHh---hhhHHHHHHHHhccccccccccCchhhHHH
Q 001349 349 IHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRP-STRTLIEM---DMMESLMTVIKKKEEDFLKMCLKPKSVSVL 420 (1094)
Q Consensus 349 ~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~-~~~~~~~~---~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~ 420 (1094)
+..+. ..+.++.|+.+|+.+ ...|+.+|..|.. .++++..+ +.++.|+.+|+.+.... ...++..
T Consensus 269 ~~~v~-~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~------~~~~a~~ 341 (780)
T 2z6g_A 269 KMAVR-LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEK------LLWTTSR 341 (780)
T ss_dssp HHHHH-HTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHH------HHHHHHH
T ss_pred HHHHH-HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHH------HHHHHHH
Confidence 55544 456899999999886 3345557777764 45555443 44599999998764221 1334555
Q ss_pred HHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhcC
Q 001349 421 LLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAAS 500 (1094)
Q Consensus 421 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~ 500 (1094)
+|..| +....++..++..|+++.|+..+..++.+.+..|+.+|..+...... .......+++|+++|.+.+
T Consensus 342 aL~~L------s~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~---~~~~~~~i~~Lv~lL~~~d 412 (780)
T 2z6g_A 342 VLKVL------SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK---QEGMEGLLGTLVQLLGSDD 412 (780)
T ss_dssp HHHHH------HTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTT---CSCCHHHHHHHHHHTTCSC
T ss_pred HHHHh------hcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchh---hhhhhhHHHHHHHHHcCCC
Confidence 56655 33457888999999999999999999999999999988877655432 2223456789999999888
Q ss_pred CchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCC--ccchhHHHHHHhhhcccCCC----CCC
Q 001349 501 DGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANH--DQCPVVAGLLLQLDLLAEPR----KMS 574 (1094)
Q Consensus 501 ~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~--~~~~~~a~~l~~l~~~~~~~----~~~ 574 (1094)
...|..|+..|..|...+. ...+.+.+.|.+.. |+..|+.... +-+.-++..|..|-. ..+. +..
T Consensus 413 ~~vr~~A~~aL~~L~~~~~-----~~~~~i~~~g~i~~---Lv~lL~~~~~~~~v~~~Al~aL~nL~~-~~~~~~~~~~~ 483 (780)
T 2z6g_A 413 INVVTCAAGILSNLTCNNY-----KNKMMVCQVGGIEA---LVRTVLRAGDREDITEPAICALRHLTS-RHQDAEMAQNA 483 (780)
T ss_dssp HHHHHHHHHHHHHHTSSCH-----HHHHHHHTTTHHHH---HHHHHHHHTTCHHHHHHHHHHHHHTTS-SSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCH-----HHHHHHHHCCCHHH---HHHHHHccCCHHHHHHHHHHHHHHHHh-cCchHHHHHHH
Confidence 8889899999999866532 22344555665554 7777766432 556677888888743 2221 123
Q ss_pred ccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhccc
Q 001349 575 IYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQG 609 (1094)
Q Consensus 575 ~~reea~~~~~~~l~~~~~~~~~~~~~~~~~~l~g 609 (1094)
+...++++.|+..|..++...++..|+.+|.||+.
T Consensus 484 v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~ 518 (780)
T 2z6g_A 484 VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 518 (780)
T ss_dssp HHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhc
Confidence 33457799999999988777889999999999974
No 296
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.88 E-value=9.3e-10 Score=98.84 Aligned_cols=49 Identities=16% Similarity=0.580 Sum_probs=43.3
Q ss_pred CCceeccCccccccC---cEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCC
Q 001349 161 PKDFVCPITTHIFDD---PVTLETGQTYERRAIQEWIERGNSSCPITRQKLSS 210 (1094)
Q Consensus 161 ~~~~~CpIc~~~~~d---Pv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~ 210 (1094)
.++..|+||++.|.+ +++++|||.||..||..|+.. +..||.||+.+..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence 347899999999988 888999999999999999986 5589999998764
No 297
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.87 E-value=4.4e-08 Score=115.24 Aligned_cols=318 Identities=13% Similarity=0.090 Sum_probs=218.1
Q ss_pred HHHHHHhhhccccchHhHHHHHHHHHHHHHhccchHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccch
Q 001349 269 LKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSV 348 (1094)
Q Consensus 269 l~~~i~~L~~s~~l~~~e~a~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~ 348 (1094)
+...+..+. ++....++.|+..++++..... ++.+......+.++..+++.|....+..++..+..+|.++...+...
T Consensus 22 l~~l~~~l~-s~~~~~r~~A~~~L~~l~~~~~-~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~ 99 (450)
T 2jdq_A 22 TSDMIEMIF-SKSPEQQLSATQKFRKLLSKEP-NPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQ 99 (450)
T ss_dssp CHHHHHHHH-SSCHHHHHHHHHHHHHHHHSSS-SCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHH
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCC-CCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 344455554 3344557788888888764222 11111112222556667777766558899999999999998766555
Q ss_pred hhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCCCh-HHHHH---hhhhHHHHHHHHhccccccccccCchhhHHH
Q 001349 349 IHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPST-RTLIE---MDMMESLMTVIKKKEEDFLKMCLKPKSVSVL 420 (1094)
Q Consensus 349 ~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~~-~~~~~---~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~ 420 (1094)
...+. ..+.++.|+.+|+.+ ...|+.+|.+|.... ..... -+.+|+|+.+|...... .-+..|+.
T Consensus 100 ~~~~~-~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~------~v~~~a~~ 172 (450)
T 2jdq_A 100 TRIVI-QAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRL------TMTRNAVW 172 (450)
T ss_dssp HHHHH-HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCH------HHHHHHHH
T ss_pred HHHHH-hCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCH------HHHHHHHH
Confidence 55555 356899999999987 567888999996653 33332 35669999999853222 12456667
Q ss_pred HHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhcC
Q 001349 421 LLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAAS 500 (1094)
Q Consensus 421 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~ 500 (1094)
.|.+|....+ +.....++ .++++.|+..+..++.+.+..++.+|..+.......+..+...+.+++++.++...+
T Consensus 173 ~L~~l~~~~~----~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~ 247 (450)
T 2jdq_A 173 ALSNLCRGKS----PPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHND 247 (450)
T ss_dssp HHHHHHCCSS----SCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSC
T ss_pred HHHHHhCCCC----CCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCc
Confidence 7777754331 12223333 789999999999999999999999888887766667778888899999999998888
Q ss_pred CchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHH
Q 001349 501 DGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEA 580 (1094)
Q Consensus 501 ~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~~~~~reea 580 (1094)
...+..|+..|..+.... ....+.+-+.|.+ ..|+.+|+...+.-+--++..|.+|..-.+.....+...+.
T Consensus 248 ~~v~~~a~~~L~~l~~~~-----~~~~~~~~~~~~l---~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~ 319 (450)
T 2jdq_A 248 YKVVSPALRAVGNIVTGD-----DIQTQVILNCSAL---QSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANI 319 (450)
T ss_dssp HHHHHHHHHHHHHHTTSC-----HHHHHHHHTTTHH---HHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH
T ss_pred hhHHHHHHHHHHHHhhCC-----hHHHHHHHHCccH---HHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCC
Confidence 888888999999887652 1222333444544 45888888766666777888888876521111122334578
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHhccc
Q 001349 581 IDTLISCLRNSDYPAAQLAAAKTIVSLQG 609 (1094)
Q Consensus 581 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~g 609 (1094)
++.|+..|.++ .+.+|..|+.+|.++.-
T Consensus 320 l~~L~~~l~~~-~~~v~~~a~~~L~~l~~ 347 (450)
T 2jdq_A 320 FPALISILQTA-EFRTRKEAAWAITNATS 347 (450)
T ss_dssp HHHHHHHHHHS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHHHc
Confidence 89999999875 45789999999999863
No 298
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.87 E-value=1.1e-09 Score=94.56 Aligned_cols=48 Identities=19% Similarity=0.573 Sum_probs=42.9
Q ss_pred CceeccCccccccCc---EEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCC
Q 001349 162 KDFVCPITTHIFDDP---VTLETGQTYERRAIQEWIERGNSSCPITRQKLSS 210 (1094)
Q Consensus 162 ~~~~CpIc~~~~~dP---v~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~ 210 (1094)
++..|+||++.|.++ +.++|||.||+.||.+|+.. +..||.||+.+..
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP 72 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence 378899999999988 77899999999999999987 4589999998765
No 299
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.86 E-value=1.5e-07 Score=107.34 Aligned_cols=244 Identities=9% Similarity=-0.033 Sum_probs=153.6
Q ss_pred eEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEe----------CCCcEEEEECCCCceEE-EEecccCccce
Q 001349 834 TIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGS----------LDKTARVWSIGNEEIHC-VQVHDIKDQIQ 902 (1094)
Q Consensus 834 ~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs----------~DgtI~vWdi~~~~~~~-~~~~~~~~~V~ 902 (1094)
+|.++|..++ +.+.++.....+ .+.|+|||++++++. .+++|.+||..+++... +........+
T Consensus 47 ~vsvID~~t~--~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~- 121 (368)
T 1mda_H 47 ENWVSCAGCG--VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFS- 121 (368)
T ss_dssp EEEEEETTTT--EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCC-
T ss_pred eEEEEECCCC--eEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccc-
Confidence 8889999999 778887655555 799999999998886 47899999999986322 2211000000
Q ss_pred eeeecCceEEEeeCCCeEEEEEeC--CeEEE--EcCCCCceEEEE--------e-CCEEEEEEcCCeEEEEECCC-----
Q 001349 903 NLAVSNSILCFIPQGAGIKVHLRN--GKTKL--LNSSKYPKCLAL--------V-QGKVYCGCQDGAIQEIDLAT----- 964 (1094)
Q Consensus 903 ~v~~~~~~~~fspdg~~l~~~~~~--g~i~l--~~~~~~v~~l~~--------s-~~~l~sgs~Dg~I~iwDl~~----- 964 (1094)
.-..+..+.|+|||+++.+.... ..+.+ +|... +..+.. . ...+++.+.||.+.+.|+.+
T Consensus 122 -~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t-v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~ 199 (368)
T 1mda_H 122 -VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD-DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAA 199 (368)
T ss_dssp -BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE-EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred -cCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh-ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence 00124455699999999998763 56777 88755 444432 1 12356677889998899886
Q ss_pred CceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCe--EEEEecC--------C---CCEEEEEE
Q 001349 965 GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN--MVGSLPT--------L---SEVRAMVV 1031 (1094)
Q Consensus 965 ~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~--~~~~~~~--------~---~~v~~l~~ 1031 (1094)
++...... ..+.-...+. . .+++..++..+. + .+.+.|..+.. .+..+.. . .....+++
T Consensus 200 ~~v~~~~t--~~i~vg~~P~---~-~~~~~~~~~vs~-~-~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~ 271 (368)
T 1mda_H 200 GIVGAQCT--GAQNCSSQAA---Q-ANYPGMLVWAVA-S-SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAK 271 (368)
T ss_dssp EECCCCSC--TTSCBCSCCE---E-ETTTTEEEECBS-S-CCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEE
T ss_pred CeEEEEee--eeeeCCCCcc---c-cccCCEEEEEcC-C-EEEEEECCCCcceEEEEEEeccccccccccccCcceeeEE
Confidence 33221000 0011112333 3 443333333333 4 79999986532 3332221 0 11112678
Q ss_pred eCC--EEEEEEc---------CCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCC-EEEEEe-CCCcEEEEeCC
Q 001349 1032 SSE--LVYLGCK---------GGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEE-FLVIGT-SDGRIQAWGLS 1094 (1094)
Q Consensus 1032 spd--~l~sgs~---------dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~-~L~sgs-~DG~I~iWdls 1094 (1094)
++| .++++.. ++.+.+||..+++.+..+..+. ...+++|+|||+ .+++.. .+++|.+||+.
T Consensus 272 s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~--~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~ 345 (368)
T 1mda_H 272 LKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH--DSDAIIAAQDGASDNYANSAGTEVLDIYDAA 345 (368)
T ss_dssp ETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred cCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC--CcceEEECCCCCEEEEEccCCCCeEEEEECC
Confidence 887 5665432 2356699999999999886443 689999999997 566666 59999999973
No 300
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.86 E-value=2.6e-08 Score=120.21 Aligned_cols=313 Identities=11% Similarity=0.086 Sum_probs=215.3
Q ss_pred HHHHHHhhhccccchHhHHHHHHHHHHHHHh-ccc-hHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhccccc
Q 001349 269 LKHAITSLCMSEILNESEMAVLQIERCWLEA-SME-LDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDK 346 (1094)
Q Consensus 269 l~~~i~~L~~s~~l~~~e~a~~~i~~~~~~~-~~~-~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~ 346 (1094)
+..++..|.+. ....+..|+..++++.... +.+ ..+. ...++..++++|....++.++..|+.+|.++...+.
T Consensus 89 i~~lv~~L~s~-~~~~~~~A~~~L~~ll~~~~~~~~~~~~----~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~ 163 (530)
T 1wa5_B 89 LPQMTQQLNSD-DMQEQLSATVKFRQILSREHRPPIDVVI----QAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS 163 (530)
T ss_dssp HHHHHHHHSCS-SHHHHHHHHHHHHHHTCCSSSCSHHHHH----HTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCCCccHHHHH----HCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH
Confidence 44455555543 3455677877777775432 222 1222 223444455555554478999999999999987666
Q ss_pred chhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCCC-hHHH---HHhhhhHHHHHHHHhccccccccccCchhhH
Q 001349 347 SVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPS-TRTL---IEMDMMESLMTVIKKKEEDFLKMCLKPKSVS 418 (1094)
Q Consensus 347 ~~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~-~~~~---~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa 418 (1094)
.....+. ..+.++.|+.+|+.+ ...|+.+|.+|... +.+. ..-+.+|+|+.+|...+.. -...|
T Consensus 164 ~~~~~~~-~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~-------v~~~a 235 (530)
T 1wa5_B 164 AQTKVVV-DADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPS-------LIRTA 235 (530)
T ss_dssp HHHHHHH-HTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHH-------HHHHH
T ss_pred HHHHHHH-HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHH-------HHHHH
Confidence 5555555 357899999999987 56788899999654 3333 3335669999999873211 13556
Q ss_pred HHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHh
Q 001349 419 VLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMA 498 (1094)
Q Consensus 419 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~ 498 (1094)
+..|..|....+ .........++++.|+..+..++.+.+..|+.+|..+.......+..+.+.+.++.+++++..
T Consensus 236 ~~~L~~L~~~~~-----~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~ 310 (530)
T 1wa5_B 236 TWTLSNLCRGKK-----PQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH 310 (530)
T ss_dssp HHHHHHHHCCSS-----SCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGC
T ss_pred HHHHHHHhCCCC-----CCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCC
Confidence 666777754321 222345567899999999999999999999998888876666677788888999999999998
Q ss_pred cCCchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHH
Q 001349 499 ASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYRE 578 (1094)
Q Consensus 499 ~~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~~~~~re 578 (1094)
.+...+..|+..|..+..... ...+.+-+.|.++ .|+.+|+...++-+.-++..|.+|..-.......+...
T Consensus 311 ~~~~v~~~a~~~L~~l~~~~~-----~~~~~~~~~~~l~---~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~ 382 (530)
T 1wa5_B 311 ESTLVQTPALRAVGNIVTGND-----LQTQVVINAGVLP---ALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDA 382 (530)
T ss_dssp SCHHHHHHHHHHHHHHTTSCH-----HHHHHHHHTTHHH---HHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHHHHcCCH-----HHHHHHHHcchHH---HHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence 887888889999998876532 2223333445444 58888887766777788888888765211111223345
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHhcc
Q 001349 579 EAIDTLISCLRNSDYPAAQLAAAKTIVSLQ 608 (1094)
Q Consensus 579 ea~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 608 (1094)
+.++.|+..|.++ ...+|..|+.+|.++.
T Consensus 383 ~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~ 411 (530)
T 1wa5_B 383 NLIPPLVKLLEVA-EYKTKKEACWAISNAS 411 (530)
T ss_dssp TCHHHHHHHHHHS-CHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcC-CHHHHHHHHHHHHHHH
Confidence 7888999999765 4578999999999986
No 301
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.86 E-value=2.5e-08 Score=107.60 Aligned_cols=225 Identities=12% Similarity=0.170 Sum_probs=169.1
Q ss_pred HHHHhhhccccchHhHHHHHHHHHHHHHhccc-hHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccchh
Q 001349 271 HAITSLCMSEILNESEMAVLQIERCWLEASME-LDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVI 349 (1094)
Q Consensus 271 ~~i~~L~~s~~l~~~e~a~~~i~~~~~~~~~~-~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~ 349 (1094)
..+..|.+. ..+.+..|+..++.+....+++ ..+. ...++.-++++|-. .++.+++.++.+|.++...++.++
T Consensus 16 ~~~~~L~s~-~~~~~~~a~~~L~~~l~~~~~~~~~~~----~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~ 89 (252)
T 4db8_A 16 QMTQQLNSD-DMQEQLSATRKFSQILSDGNEQIQAVI----DAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQI 89 (252)
T ss_dssp HHHHHHHSS-CSSHHHHHHHHHHHHHHHHHHHHHHHH----HTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHcCC-CHHHHHHHHHHHHHHHcCCCchHHHHH----HcCcHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCHHHH
Confidence 344445443 3355778888886655543333 2222 23344545555544 568999999999999987777777
Q ss_pred hhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCCChHHH----HHhhhhHHHHHHHHhccccccccccCchhhHHHH
Q 001349 350 HTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPSTRTL----IEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLL 421 (1094)
Q Consensus 350 ~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~~~~~----~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~ 421 (1094)
..+.. .+.++.|+.+|+.+ ...|+.+|.+|...+.+. ...+.+|.|+.+|..++.. -+..|+..
T Consensus 90 ~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~-------v~~~a~~~ 161 (252)
T 4db8_A 90 QAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-------ILQEALWA 161 (252)
T ss_dssp HHHHH-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHH-------HHHHHHHH
T ss_pred HHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHH-------HHHHHHHH
Confidence 77774 46899999999987 667888999998776654 3334569999999775322 14667777
Q ss_pred HHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhcCC
Q 001349 422 LGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASD 501 (1094)
Q Consensus 422 l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~ 501 (1094)
|.+|... +.++...++..|+++.|++.+..++.+-+..|+.+|.+++..+...+..+.+.+.++++++++++.+.
T Consensus 162 L~~l~~~-----~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~ 236 (252)
T 4db8_A 162 LSNIASG-----GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENE 236 (252)
T ss_dssp HHHHTTS-----CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSS
T ss_pred HHHHHcC-----ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCH
Confidence 8877433 24666778889999999999999999999999999998887778888899999999999999999988
Q ss_pred chhHHHHHHHHHH
Q 001349 502 GERFEIVCFLSEL 514 (1094)
Q Consensus 502 ~~~~~~~~~l~el 514 (1094)
..|..|...|..|
T Consensus 237 ~v~~~A~~~L~~l 249 (252)
T 4db8_A 237 KIQKEAQEALEKL 249 (252)
T ss_dssp HHHHTHHHHHHTT
T ss_pred HHHHHHHHHHHHH
Confidence 8898888888766
No 302
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.85 E-value=1.4e-09 Score=124.94 Aligned_cols=204 Identities=14% Similarity=0.091 Sum_probs=115.4
Q ss_pred EeCCEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCcc
Q 001349 821 CFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQ 900 (1094)
Q Consensus 821 fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~ 900 (1094)
...+.+++++.||.|+.||..+| +.+..+.. +.+.+..+..++..+++++.||.|+.||..+|+............
T Consensus 7 v~~~~v~~gs~dg~v~a~d~~tG--~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~ 82 (369)
T 2hz6_A 7 LPETLLFVSTLDGSLHAVSKRTG--SIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPEL 82 (369)
T ss_dssp -CTTEEEEEETTSEEEEEETTTC--CEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHH
T ss_pred eeCCEEEEEcCCCEEEEEECCCC--CEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccc
Confidence 34569999999999999999999 67777765 556666666778888888999999999998875322111111111
Q ss_pred ceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCC
Q 001349 901 IQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGK 980 (1094)
Q Consensus 901 V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h 980 (1094)
+.+. + ++. .++.+++|+.|+.|+.||..+|+....+.. +
T Consensus 83 ~~~s---p---~~~-----------------------------~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~------~ 121 (369)
T 2hz6_A 83 VQAS---P---CRS-----------------------------SDGILYMGKKQDIWYVIDLLTGEKQQTLSS------A 121 (369)
T ss_dssp HTTC---S---CC----------------------------------CCCCEEEEEEEEECCC-----------------
T ss_pred cccC---c---eEe-----------------------------cCCEEEEEeCCCEEEEEECCCCcEEEEecC------C
Confidence 1000 0 000 123477888899999999999988744322 1
Q ss_pred CCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeC-----CEEEEEEcCCeEEEEECCCCcE
Q 001349 981 ANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSS-----ELVYLGCKGGTVEIWDQKRQIR 1055 (1094)
Q Consensus 981 ~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~sp-----d~l~sgs~dg~I~vwd~~t~~~ 1055 (1094)
. ...++|++..++.++.|+ .|+.||..+|+.+..+.... .....+++ +.+++++.||.|+.||..+|+.
T Consensus 122 ~----~~~~~p~~~~v~~~~~dg-~v~a~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~ 195 (369)
T 2hz6_A 122 F----ADSLSPSTSLLYLGRTEY-TITMYDTKTRELRWNATYFD-YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV 195 (369)
T ss_dssp ---------------EEEEEEEE-EEECCCSSSSSCCCEEEEEE-ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred C----cccccccCCEEEEEecCC-EEEEEECCCCCEEEeEeccc-ccCccccCCccccceEEEECCCCEEEEEECCCCcE
Confidence 1 123345666666666675 99999999998776654211 12233444 4688899999999999999998
Q ss_pred EEEecccCCcceE-EEEEcCCCC
Q 001349 1056 IETLQTGTSGKVQ-CMALDDNEE 1077 (1094)
Q Consensus 1056 ~~~l~~~h~~~I~-~l~~Spdg~ 1077 (1094)
+..+. ...++. ...++++|.
T Consensus 196 ~W~~~--~~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 196 LWIQN--YASPVVAFYVWQREGL 216 (369)
T ss_dssp EEEEE--CSSCEEEEEECTTSSC
T ss_pred EEEec--CCCceEEEEEecCCce
Confidence 88874 334443 345556664
No 303
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.84 E-value=6.7e-10 Score=107.72 Aligned_cols=52 Identities=19% Similarity=0.531 Sum_probs=47.1
Q ss_pred CceeccCccccccCc-------EEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCC
Q 001349 162 KDFVCPITTHIFDDP-------VTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLP 214 (1094)
Q Consensus 162 ~~~~CpIc~~~~~dP-------v~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~ 214 (1094)
+++.||||++.|.+| ++++|||+||+.||.+|+.. ...||.||+.+....+.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~ 64 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYH 64 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTCEE
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCcccccc
Confidence 389999999999999 99999999999999999987 45899999999877764
No 304
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.84 E-value=7.1e-07 Score=98.86 Aligned_cols=217 Identities=8% Similarity=0.043 Sum_probs=135.4
Q ss_pred CcEEEEeeCCCCeEEEeCCcceeecccCCCcEEEEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEecc--cCCCeEEE
Q 001349 785 MVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIRE--HTKAVTGL 861 (1094)
Q Consensus 785 ~~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~--H~~~V~sv 861 (1094)
+..+++...++.|..||..........+...+.+++++++ .++.+. ++.|.+||..++....+..... ....++.+
T Consensus 25 ~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di 103 (297)
T 3g4e_A 25 NSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGGYVATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDG 103 (297)
T ss_dssp TEEEEEETTTTEEEEEETTTCCEEEEECSSCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEE
T ss_pred CEEEEEECCCCEEEEEECCCCcEEEEeCCCceEEEEECCCCCEEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCE
Confidence 4566667778999999987433333345678999999987 444444 5789999999884333333221 12458899
Q ss_pred EEecCCCEEEEEeCC---------CcEEEEECCC-CceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEE
Q 001349 862 AILQSGEMLYSGSLD---------KTARVWSIGN-EEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKL 931 (1094)
Q Consensus 862 ~fspdg~~LaSgs~D---------gtI~vWdi~~-~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l 931 (1094)
+++|+|+++++...+ ..-.+|.++. ++...+. .... .++.++|+|||+.+
T Consensus 104 ~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~--~~~~-------~pngi~~spdg~~l----------- 163 (297)
T 3g4e_A 104 KVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYF--DQVD-------ISNGLDWSLDHKIF----------- 163 (297)
T ss_dssp EECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEE--EEES-------BEEEEEECTTSCEE-----------
T ss_pred EECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEe--eccc-------cccceEEcCCCCEE-----------
Confidence 999999977765332 2345565543 2222111 1111 12344588887753
Q ss_pred EcCCCCceEEEEeCCEEEEEEcCCeEEEEEC--CCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEE
Q 001349 932 LNSSKYPKCLALVQGKVYCGCQDGAIQEIDL--ATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMW 1009 (1094)
Q Consensus 932 ~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl--~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iw 1009 (1094)
+++.+.++.|..||+ .++..... .....+..+......+++++++.+.++...+ +.|..|
T Consensus 164 ----------------yv~~~~~~~i~~~~~d~~~G~~~~~-~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~-~~v~~~ 225 (297)
T 3g4e_A 164 ----------------YYIDSLSYSVDAFDYDLQTGQISNR-RSVYKLEKEEQIPDGMCIDAEGKLWVACYNG-GRVIRL 225 (297)
T ss_dssp ----------------EEEEGGGTEEEEEEECTTTCCEEEE-EEEEECCGGGCEEEEEEEBTTSCEEEEEETT-TEEEEE
T ss_pred ----------------EEecCCCCcEEEEeccCCCCcccCc-EEEEECCCCCCCCCeeEECCCCCEEEEEcCC-CEEEEE
Confidence 334455678888876 45543210 0001122233467889999988777776555 489999
Q ss_pred ECCCCeEEEEecC-CCCEEEEEEe-CC--EEEEEE
Q 001349 1010 STSNYNMVGSLPT-LSEVRAMVVS-SE--LVYLGC 1040 (1094)
Q Consensus 1010 d~~~~~~~~~~~~-~~~v~~l~~s-pd--~l~sgs 1040 (1094)
|..+++.+..+.. ...+++++|. || .|++++
T Consensus 226 d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 226 DPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp CTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred cCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence 9999999888884 4789999998 55 455444
No 305
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.82 E-value=5e-06 Score=95.10 Aligned_cols=252 Identities=15% Similarity=0.169 Sum_probs=155.5
Q ss_pred EeCCEEEEEECCCeEEEEecCCCcceeEEEeccc---------CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEE
Q 001349 821 CFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREH---------TKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHC 891 (1094)
Q Consensus 821 fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H---------~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~ 891 (1094)
...+.++.++.+|.|..||..++ +.+..+... ...+.+. ...++..++.++.++.|..+|..+|+..-
T Consensus 51 v~~~~v~~~~~~g~v~a~d~~tG--~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W 127 (376)
T 3q7m_A 51 LADNVVYAADRAGLVKALNADDG--KEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAW 127 (376)
T ss_dssp EETTEEEEECTTSEEEEEETTTC--CEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEE
T ss_pred EECCEEEEEcCCCeEEEEEccCC--ceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEE
Confidence 35678999999999999999999 555555432 1223221 12246678889999999999999987432
Q ss_pred EEecccCcccee-eeecCceEEEeeCCCeEEEEEeCCeEEEEcCC-----------CCc------eEEEEeCCEEEEEEc
Q 001349 892 VQVHDIKDQIQN-LAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS-----------KYP------KCLALVQGKVYCGCQ 953 (1094)
Q Consensus 892 ~~~~~~~~~V~~-v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~-----------~~v------~~l~~s~~~l~sgs~ 953 (1094)
.... ...+.. .... +..+.+...++.+..++.. ..+ ......++.+++++.
T Consensus 128 ~~~~--~~~~~~~p~~~---------~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~ 196 (376)
T 3q7m_A 128 QTKV--AGEALSRPVVS---------DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGD 196 (376)
T ss_dssp EEEC--SSCCCSCCEEE---------TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCT
T ss_pred EEeC--CCceEcCCEEE---------CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcC
Confidence 2221 222211 1111 2233333334444443321 111 233345788999999
Q ss_pred CCeEEEEECCCCceeEEeccceeecCCC--CC---e-EEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEE
Q 001349 954 DGAIQEIDLATGTFATIQTGHRKLLGKA--NP---V-HALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVR 1027 (1094)
Q Consensus 954 Dg~I~iwDl~~~~~~~~~~~~~~~~~h~--~~---V-~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~ 1027 (1094)
++.+..+|..+|+........... +.. .. + ....+.. +. +..++.++ .+..+|..+++.+...... ...
T Consensus 197 ~g~l~~~d~~tG~~~w~~~~~~~~-~~~~~~~~~~~~~~p~~~~-~~-v~~~~~~g-~l~~~d~~tG~~~w~~~~~-~~~ 271 (376)
T 3q7m_A 197 NGRVSAVLMEQGQMIWQQRISQAT-GSTEIDRLSDVDTTPVVVN-GV-VFALAYNG-NLTALDLRSGQIMWKRELG-SVN 271 (376)
T ss_dssp TTEEEEEETTTCCEEEEEECCC------------CCCCCCEEET-TE-EEEECTTS-CEEEEETTTCCEEEEECCC-CEE
T ss_pred CCEEEEEECCCCcEEEEEecccCC-CCcccccccccCCCcEEEC-CE-EEEEecCc-EEEEEECCCCcEEeeccCC-CCC
Confidence 999999999999987544321100 000 00 0 1111222 33 33344555 8999999999988776633 356
Q ss_pred EEEEeCCEEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1028 AMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1028 ~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
.+....+.+++++.++.|..+|..+++.+..........+...... +..|+.++.+|.|.+||.
T Consensus 272 ~~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g~l~~~d~ 335 (376)
T 3q7m_A 272 DFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDSEGYLHWINV 335 (376)
T ss_dssp EEEEETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECTTSEEEEEET
T ss_pred CceEECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeCCCeEEEEEC
Confidence 6777888999999999999999999998877742222233333332 567888999999999985
No 306
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.81 E-value=7.2e-07 Score=110.69 Aligned_cols=293 Identities=14% Similarity=0.100 Sum_probs=165.7
Q ss_pred CcEEEEeeCCCCeEEEeCCcceeec--ccCC-----------CcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEe
Q 001349 785 MVKVLSNGHDSSADFWNHRELVHVD--SSEN-----------GKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQI 851 (1094)
Q Consensus 785 ~~~l~s~s~dg~I~vWd~~~~~~~~--~~h~-----------~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l 851 (1094)
+..++.++.++.|.-+|..+..... .... .....+++..+.++.++.|+.|..+|..+| +.+..+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG--~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATG--KEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTC--CEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCC--CEEeee
Confidence 5556666667888877765322221 1110 011245566779999999999999999999 677776
Q ss_pred ccc-C----CCeEE-EEEecCCCEEEEEeC------CCcEEEEECCCCceEEEEecccCccceeee-----------ec-
Q 001349 852 REH-T----KAVTG-LAILQSGEMLYSGSL------DKTARVWSIGNEEIHCVQVHDIKDQIQNLA-----------VS- 907 (1094)
Q Consensus 852 ~~H-~----~~V~s-v~fspdg~~LaSgs~------DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~-----------~~- 907 (1094)
..+ . ..+.+ ..+ .+..++.++. +|.|+.||..+|+..-........ ..... |.
T Consensus 155 ~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~-~~~~~~~~~~~~g~~~w~~ 231 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGD-PSKPFEDESMKRAARTWDP 231 (677)
T ss_dssp ETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCC-TTSCCSSHHHHHHHTTSCG
T ss_pred cCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCC-ccccccccccccccccccc
Confidence 644 1 12221 111 2345555543 799999999999743222111100 00000 00
Q ss_pred -------------CceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccc
Q 001349 908 -------------NSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGH 974 (1094)
Q Consensus 908 -------------~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~ 974 (1094)
-....++|++..+.+...++.. |....... ...+.++ -++|..+|..+|+....+...
T Consensus 232 ~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~--w~~~~~~~---~~gd~~~----~~sv~AlD~~TG~~~W~~~~~ 302 (677)
T 1kb0_A 232 SGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSP--WSHKVRSP---KGGDNLY----LASIVALDPDTGKYKWHYQET 302 (677)
T ss_dssp GGCHHHHCEECCCCSCEEEETTTTEEEEECCCEES--SCHHHHST---TCCCCTT----TTEEEEECTTTCCEEEEEESS
T ss_pred cCceeEeCCCcccccceeEcCCCCEEEEECCCCcc--ccCCCCCc---cCCCCee----eEEEEEEECCCCCEEEEEecC
Confidence 0112344444443333222211 11000000 0000000 025999999999988654321
Q ss_pred ee-ec--CCCCCeEEEEEeCCc---cEEEEEECCCCEEEEEECCCCeEEEEecCC--CC----------E----------
Q 001349 975 RK-LL--GKANPVHALQVHNGL---VYTASTSLDGAAVKMWSTSNYNMVGSLPTL--SE----------V---------- 1026 (1094)
Q Consensus 975 ~~-~~--~h~~~V~sl~fs~~~---~~las~s~Dg~~I~iwd~~~~~~~~~~~~~--~~----------v---------- 1026 (1094)
.. .. ........+....++ ..++.++.+| .+.++|..+|+.+..+... .. +
T Consensus 303 ~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G-~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~ 381 (677)
T 1kb0_A 303 PGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNG-FFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSK 381 (677)
T ss_dssp TTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTS-EEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTS
T ss_pred CCcccccccCCCcEEEecccCCcEeeEEEEECCCC-EEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCC
Confidence 00 00 001122223333355 5677777776 9999999999998776521 10 1
Q ss_pred --------------EEEEEeCC--EEEEEEc-------------------------------------------CCeEEE
Q 001349 1027 --------------RAMVVSSE--LVYLGCK-------------------------------------------GGTVEI 1047 (1094)
Q Consensus 1027 --------------~~l~~spd--~l~sgs~-------------------------------------------dg~I~v 1047 (1094)
..++++|+ .+++... .|.|..
T Consensus 382 ~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A 461 (677)
T 1kb0_A 382 PQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLA 461 (677)
T ss_dssp CEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEE
T ss_pred ccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEE
Confidence 14678886 6666433 278999
Q ss_pred EECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1048 WDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1048 wd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
||+.+++.+..+. +...+.+..++.++.++++++.||.+++||..
T Consensus 462 ~D~~tG~~~W~~~--~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~ 506 (677)
T 1kb0_A 462 WDPVAQKAAWSVE--HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAA 506 (677)
T ss_dssp EETTTTEEEEEEE--ESSSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred EeCCCCcEEeecC--CCCCCcCcceEeCCCEEEEECCCCcEEEEECC
Confidence 9999999988885 34455666677888899999999999999963
No 307
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.81 E-value=1.8e-07 Score=106.09 Aligned_cols=241 Identities=9% Similarity=0.015 Sum_probs=138.9
Q ss_pred CcEEEEEEeCC--EEEEEE--CCCeEEEEecCCCcceeEEEe-------cccCCCeEEEEEecCCCEEEEEeC-----CC
Q 001349 814 GKVLSIACFRD--KIFSGH--SDGTIKVWTGRGSILHLIQQI-------REHTKAVTGLAILQSGEMLYSGSL-----DK 877 (1094)
Q Consensus 814 ~~V~~l~fspd--~LaSgs--~Dg~I~vWd~~t~~~~~~~~l-------~~H~~~V~sv~fspdg~~LaSgs~-----Dg 877 (1094)
..+..++++++ ++++.. .+|.++||.+.++ + +..+ .+|-..+..++|+++|+++++-.. ++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g--~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQD--G-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETT--E-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCC--C-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCC
Confidence 67899999986 555643 2454666766555 2 2322 235568999999999887666544 57
Q ss_pred cEEEEECCCCceE-EEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEE---c
Q 001349 878 TARVWSIGNEEIH-CVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGC---Q 953 (1094)
Q Consensus 878 tI~vWdi~~~~~~-~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs---~ 953 (1094)
.|.+||..+++.. .+.... .+..-......+++++++..+. ++.. .
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~---~~~~~~~~~~~v~vd~~~g~~y---------------------------vtd~~~~~ 143 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPP---PITLSNSFVNDLAVDLIHNFVY---------------------------ISDPAPDD 143 (343)
T ss_dssp EEEEEETTTTEEEEEEECCT---TTSCTTCCCCEEEEETTTTEEE---------------------------EEECCSGG
T ss_pred eEEEEECCCCeEEEEEECCh---hhcccccccceEEEecCCCEEE---------------------------EEcCccCC
Confidence 8999999988632 222111 0000000112233555433321 2222 3
Q ss_pred CCeEEEEECCCCceeEEeccce---------eecC--------------CCCCeEEEEEeCCccEEEEEECCCCEEEEEE
Q 001349 954 DGAIQEIDLATGTFATIQTGHR---------KLLG--------------KANPVHALQVHNGLVYTASTSLDGAAVKMWS 1010 (1094)
Q Consensus 954 Dg~I~iwDl~~~~~~~~~~~~~---------~~~~--------------h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd 1010 (1094)
++.|.+||+.+++.......+. ...+ ....+..++|++++..+..+..++..+..++
T Consensus 144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~ 223 (343)
T 2qe8_A 144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIK 223 (343)
T ss_dssp GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence 5666667766665443322100 0000 0124688999999988777777765665555
Q ss_pred CC---CCe--------EEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCC
Q 001349 1011 TS---NYN--------MVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEE 1077 (1094)
Q Consensus 1011 ~~---~~~--------~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~ 1077 (1094)
.. .+. .+....+......++++++ ++++...++.|.+||..+++........+...+++++|.++|.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~ 303 (343)
T 2qe8_A 224 SADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGY 303 (343)
T ss_dssp HHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSC
T ss_pred HHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCc
Confidence 32 111 0111112234567889887 5556667899999998666643333222345689999999999
Q ss_pred EEEEEeCCCc
Q 001349 1078 FLVIGTSDGR 1087 (1094)
Q Consensus 1078 ~L~sgs~DG~ 1087 (1094)
++++.+..+.
T Consensus 304 l~v~~~~~~~ 313 (343)
T 2qe8_A 304 LYFDCNQLHH 313 (343)
T ss_dssp EEEEECCGGG
T ss_pred EEEEeCcccc
Confidence 8888775443
No 308
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.81 E-value=2.5e-09 Score=100.66 Aligned_cols=49 Identities=10% Similarity=0.182 Sum_probs=41.9
Q ss_pred ceeccCccccccCcE------------------EcCCcccccHHhHHHHHHh----CCCCCCCCCcCCCCC
Q 001349 163 DFVCPITTHIFDDPV------------------TLETGQTYERRAIQEWIER----GNSSCPITRQKLSST 211 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv------------------~~~cGhtfc~~ci~~~~~~----~~~~CP~c~~~~~~~ 211 (1094)
+..||||++.|.+|+ +++|||.||+.||..|+.. .+..||.||+.+...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 668999999998876 7899999999999999963 345799999987644
No 309
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.78 E-value=2.9e-07 Score=104.99 Aligned_cols=272 Identities=8% Similarity=-0.046 Sum_probs=163.1
Q ss_pred EEEEeeCCC----CeEEEeCCc--ceeecccCCCcEEEEEEeCC--EEEEEE----------CCCeEEEEecCCCcceeE
Q 001349 787 KVLSNGHDS----SADFWNHRE--LVHVDSSENGKVLSIACFRD--KIFSGH----------SDGTIKVWTGRGSILHLI 848 (1094)
Q Consensus 787 ~l~s~s~dg----~I~vWd~~~--~~~~~~~h~~~V~~l~fspd--~LaSgs----------~Dg~I~vWd~~t~~~~~~ 848 (1094)
.+++...++ +|.+.|..+ .+..+.....+ .+.|+|| +++.+. .+++|.+||..++ +.+
T Consensus 34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~--~vv 109 (368)
T 1mda_H 34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF--LPI 109 (368)
T ss_dssp EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC--CEE
T ss_pred EEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC--CEE
Confidence 445555455 677999873 33333333344 7999997 555554 4789999999999 677
Q ss_pred EEeccc-------CCCeEEEEEecCCCEEEEEeC--CCcEEE--EECCCCceEEEEecccCccceeeeecC--ceEEEee
Q 001349 849 QQIREH-------TKAVTGLAILQSGEMLYSGSL--DKTARV--WSIGNEEIHCVQVHDIKDQIQNLAVSN--SILCFIP 915 (1094)
Q Consensus 849 ~~l~~H-------~~~V~sv~fspdg~~LaSgs~--DgtI~v--Wdi~~~~~~~~~~~~~~~~V~~v~~~~--~~~~fsp 915 (1094)
.++.-+ ......++|+|||++++++.. +..|.+ ||..+ ...+... ..+ .+...+ ....+++
T Consensus 110 ~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--v~~i~v~---~~~-~~~p~g~~~~~~~~~ 183 (368)
T 1mda_H 110 ADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--DQLTKSA---SCF-HIHPGAAATHYLGSC 183 (368)
T ss_dssp EEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--EEEEECS---SCC-CCEEEETTEEECCCC
T ss_pred EEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--ceEEECC---Cce-EEccCCCeEEEEEcC
Confidence 777533 123567999999999998874 467888 99876 2333221 110 010000 0123556
Q ss_pred CCCeEEEEEeC-----CeEEE-----EcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeec-----CC
Q 001349 916 QGAGIKVHLRN-----GKTKL-----LNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLL-----GK 980 (1094)
Q Consensus 916 dg~~l~~~~~~-----g~i~l-----~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~-----~h 980 (1094)
+|+.+.+.... +.+.. +........ ...++.++..+. +.|.+.|..++....... ..+. .+
T Consensus 184 dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~--~~~~~~~~~~~ 259 (368)
T 1mda_H 184 PASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQ-ANYPGMLVWAVA-SSILQGDIPAAGATMKAA--IDGNESGRKAD 259 (368)
T ss_dssp TTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEE-ETTTTEEEECBS-SCCEEEECCSSCCEEECC--CCSSCTHHHHT
T ss_pred CCCEEEEECccccccCCeEEEEeeeeeeCCCCccc-cccCCEEEEEcC-CEEEEEECCCCcceEEEE--EEecccccccc
Confidence 66655544332 22211 111112221 222456666666 999999987543211100 0000 00
Q ss_pred ---CCCeEEEEEeCCccEEEEEEC-C-C------CEEEEEECCCCeEEEEecCCCCEEEEEEeCC---EEEEEE-cCCeE
Q 001349 981 ---ANPVHALQVHNGLVYTASTSL-D-G------AAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE---LVYLGC-KGGTV 1045 (1094)
Q Consensus 981 ---~~~V~sl~fs~~~~~las~s~-D-g------~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd---~l~sgs-~dg~I 1045 (1094)
......+.+++++..+..+.. . + ..+.+||+.+++.+.++..+....+++|++| .+++.. .++.|
T Consensus 260 ~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~V 339 (368)
T 1mda_H 260 NFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVL 339 (368)
T ss_dssp TEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEE
T ss_pred ccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeE
Confidence 011122678988765554322 1 1 2566999999999999886668999999998 455566 59999
Q ss_pred EEEECCCCcEEEEecccCCcceEEEEEcC
Q 001349 1046 EIWDQKRQIRIETLQTGTSGKVQCMALDD 1074 (1094)
Q Consensus 1046 ~vwd~~t~~~~~~l~~~h~~~I~~l~~Sp 1074 (1094)
.|+|+.+++.+.++..+ ...+.+++.+
T Consensus 340 sVID~~t~kvv~~I~vg--~~P~~i~~~~ 366 (368)
T 1mda_H 340 DIYDAASDQDQSSVELD--KGPESLSVQN 366 (368)
T ss_dssp EEEESSSCEEEEECCCC--SCCCEEECCC
T ss_pred EEEECCCCcEEEEEECC--CCCCEEEeec
Confidence 99999999999999633 2456666643
No 310
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.77 E-value=4.8e-08 Score=102.24 Aligned_cols=181 Identities=13% Similarity=0.159 Sum_probs=148.1
Q ss_pred hhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCC-ChHHHHHh---hh
Q 001349 321 ILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRP-STRTLIEM---DM 392 (1094)
Q Consensus 321 ~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~-~~~~~~~~---~~ 392 (1094)
.|+.+.+..+++.|...|.++...++..+..+... +.++.|+.+|+.+ ...|+.+|.+|.. .+.++..+ +.
T Consensus 19 ~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~ 97 (210)
T 4db6_A 19 QQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDA-GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGA 97 (210)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTC
T ss_pred HHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc-CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCC
Confidence 35567899999999999999977777777777754 6899999999987 5678889999974 55554443 45
Q ss_pred hHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHH
Q 001349 393 MESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRC 472 (1094)
Q Consensus 393 ~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~ 472 (1094)
+|+|+.+|..++.. -+..|...|.+|.. .+.++...++..|+++.|++.++.++.+-+..|+.+|..+
T Consensus 98 i~~L~~lL~~~~~~-------v~~~a~~~L~~l~~-----~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 165 (210)
T 4db6_A 98 LPALVQLLSSPNEQ-------ILQEALWALSNIAS-----GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165 (210)
T ss_dssp HHHHHHHTTCSCHH-------HHHHHHHHHHHHTT-----SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHH-------HHHHHHHHHHHHHc-----CCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 69999999876422 14567777887743 2345667888999999999999999999999999999999
Q ss_pred hhccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHHH
Q 001349 473 MQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSEL 514 (1094)
Q Consensus 473 ~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el 514 (1094)
+..+...+..+.+.+.++++++++.+.+...|..|..+|..|
T Consensus 166 ~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l 207 (210)
T 4db6_A 166 ASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207 (210)
T ss_dssp HTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 888788899999999999999999988888898888888776
No 311
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.77 E-value=2e-06 Score=96.71 Aligned_cols=218 Identities=10% Similarity=0.020 Sum_probs=131.4
Q ss_pred ccccc-CcEEEEeeCCCCeEEEeCCcceeecccCCCcEEEEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEecc--cC
Q 001349 780 PLAFE-MVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIRE--HT 855 (1094)
Q Consensus 780 ~~~~d-~~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~--H~ 855 (1094)
.+.++ +..+++...++.|..||..........+...+.+++|+++ .++.++.+ .|.+||..++....+..... ..
T Consensus 55 ~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~~~~~~~~~~~~ 133 (326)
T 2ghs_A 55 TFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELESDLPG 133 (326)
T ss_dssp EEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSSTTCTT
T ss_pred eEeCCCCEEEEEECCCCEEEEEECCCCcEEEEECCCcceEEEEeCCCeEEEEECC-CEEEEECCCCcEEEEeeCCCCCCC
Confidence 34454 4456666678899999987432222234568999999986 55555554 49999998884333322211 12
Q ss_pred CCeEEEEEecCCCEEEEEeCC------CcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeE
Q 001349 856 KAVTGLAILQSGEMLYSGSLD------KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKT 929 (1094)
Q Consensus 856 ~~V~sv~fspdg~~LaSgs~D------gtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i 929 (1094)
..++.+.++|+|+++++...+ +.|..++ +++...+.. ...... .++|+|+|+.+
T Consensus 134 ~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~--~~~~~~-------~i~~s~dg~~l--------- 193 (326)
T 2ghs_A 134 NRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA--DISIPN-------SICFSPDGTTG--------- 193 (326)
T ss_dssp EEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE--EESSEE-------EEEECTTSCEE---------
T ss_pred CCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC--CCcccC-------CeEEcCCCCEE---------
Confidence 468999999999977765432 3444445 444322211 111122 33477877653
Q ss_pred EEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECC--CC-cee--EEeccceeecCCCCCeEEEEEeCCccEEEEEECCCC
Q 001349 930 KLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLA--TG-TFA--TIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGA 1004 (1094)
Q Consensus 930 ~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~--~~-~~~--~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~ 1004 (1094)
+++.+.++.|.+||+. ++ ... ..+ ..+......+..+.+++++.+.++...++
T Consensus 194 ------------------yv~~~~~~~I~~~d~~~~~Gl~~~~~~~~---~~~~~~~~~p~gi~~d~~G~lwva~~~~~- 251 (326)
T 2ghs_A 194 ------------------YFVDTKVNRLMRVPLDARTGLPTGKAEVF---IDSTGIKGGMDGSVCDAEGHIWNARWGEG- 251 (326)
T ss_dssp ------------------EEEETTTCEEEEEEBCTTTCCBSSCCEEE---EECTTSSSEEEEEEECTTSCEEEEEETTT-
T ss_pred ------------------EEEECCCCEEEEEEcccccCCcccCceEE---EECCCCCCCCCeeEECCCCCEEEEEeCCC-
Confidence 2333456788888875 55 321 011 11122334567899998887776665444
Q ss_pred EEEEEECCCCeEEEEec-CCCCEEEEEEe-CC--EEEEEEc
Q 001349 1005 AVKMWSTSNYNMVGSLP-TLSEVRAMVVS-SE--LVYLGCK 1041 (1094)
Q Consensus 1005 ~I~iwd~~~~~~~~~~~-~~~~v~~l~~s-pd--~l~sgs~ 1041 (1094)
.|..||. +++.+..+. +...+++++|+ ++ .+++++.
T Consensus 252 ~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 252 AVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred EEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEec
Confidence 8999998 677777776 44579999998 65 5555543
No 312
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.77 E-value=1.3e-09 Score=93.63 Aligned_cols=43 Identities=14% Similarity=0.230 Sum_probs=39.8
Q ss_pred ceeccCccccccCcEEcCCccc-ccHHhHHHHHHhCCCCCCCCCcCCCC
Q 001349 163 DFVCPITTHIFDDPVTLETGQT-YERRAIQEWIERGNSSCPITRQKLSS 210 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~~~cGht-fc~~ci~~~~~~~~~~CP~c~~~~~~ 210 (1094)
++.|+||++.+.+||+++|||+ ||+.|+..| ..||.||+.+..
T Consensus 24 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 7899999999999999999999 999999988 579999998764
No 313
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.75 E-value=1.6e-06 Score=100.82 Aligned_cols=236 Identities=9% Similarity=0.050 Sum_probs=138.5
Q ss_pred ccccccCcEEEEeeCCCCeEEEeCCc-ceeecccCCCcEEEEEEeCC--EEEEEECCC--eEEEEecCCCcceeEEEe--
Q 001349 779 SPLAFEMVKVLSNGHDSSADFWNHRE-LVHVDSSENGKVLSIACFRD--KIFSGHSDG--TIKVWTGRGSILHLIQQI-- 851 (1094)
Q Consensus 779 ~~~~~d~~~l~s~s~dg~I~vWd~~~-~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg--~I~vWd~~t~~~~~~~~l-- 851 (1094)
..+.+++..+++...++.|++||... ....+........ ++|+++ .|++++.++ .|.+||..++. ....+
T Consensus 136 la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~--~~~~~g~ 212 (409)
T 3hrp_A 136 IAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGW--APTRIGQ 212 (409)
T ss_dssp EEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTT--CEEEEEE
T ss_pred EEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCc--eeEEeee
Confidence 33456777777777789999999873 2222222233333 899986 788888766 79999987663 22333
Q ss_pred --cccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCc-eEEEeeCCCeEEEEEeCCe
Q 001349 852 --REHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNS-ILCFIPQGAGIKVHLRNGK 928 (1094)
Q Consensus 852 --~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~-~~~fspdg~~l~~~~~~g~ 928 (1094)
..+...+++++++|++..|+.+..++.|+.||..++....+........ ..+.|. .++|+|++..+.
T Consensus 213 ~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~---~~~~P~~~ia~~p~~g~ly------- 282 (409)
T 3hrp_A 213 LGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGS---LGTNPGPYLIYYFVDSNFY------- 282 (409)
T ss_dssp CCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSC---CCCSSCCEEEEETTTTEEE-------
T ss_pred ccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCC---CCCCccccEEEeCCCCEEE-------
Confidence 2255678899999955556667778999999998875433322111110 001111 444777543322
Q ss_pred EEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccce---------eecCCCCCeEEEEEeCCccEEEEE
Q 001349 929 TKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHR---------KLLGKANPVHALQVHNGLVYTAST 999 (1094)
Q Consensus 929 i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~---------~~~~h~~~V~sl~fs~~~~~las~ 999 (1094)
++-..++.|+.||.... .. .+.+.. .....-.....+++++++.+.++-
T Consensus 283 --------------------v~d~~~~~I~~~~~~g~-~~-~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad 340 (409)
T 3hrp_A 283 --------------------MSDQNLSSVYKITPDGE-CE-WFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVD 340 (409)
T ss_dssp --------------------EEETTTTEEEEECTTCC-EE-EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEE
T ss_pred --------------------EEeCCCCEEEEEecCCC-EE-EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEe
Confidence 22233455555554422 11 110000 000112357899999999866665
Q ss_pred E-CCCCEEEEEECCCCeEEEEecC---------------CCCEEEEEEeCC-EE-EEEEcCCeEEEEEC
Q 001349 1000 S-LDGAAVKMWSTSNYNMVGSLPT---------------LSEVRAMVVSSE-LV-YLGCKGGTVEIWDQ 1050 (1094)
Q Consensus 1000 s-~Dg~~I~iwd~~~~~~~~~~~~---------------~~~v~~l~~spd-~l-~sgs~dg~I~vwd~ 1050 (1094)
+ .+ +.|+.||..++.......+ -.....++++++ .+ ++-..++.|+.+++
T Consensus 341 ~~~~-~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 341 GFKG-YCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTTT-CEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCC-CEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 5 44 5999999878765433322 145889999986 44 44455677877764
No 314
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.75 E-value=6.4e-06 Score=94.43 Aligned_cols=240 Identities=7% Similarity=-0.044 Sum_probs=147.5
Q ss_pred cccccccCcEEEEee----------CCCCeEEEeCCcce--eec-cc------CCCcEEEEEEeCC--EEEEEEC--CCe
Q 001349 778 YSPLAFEMVKVLSNG----------HDSSADFWNHRELV--HVD-SS------ENGKVLSIACFRD--KIFSGHS--DGT 834 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s----------~dg~I~vWd~~~~~--~~~-~~------h~~~V~~l~fspd--~LaSgs~--Dg~ 834 (1094)
...+++|+++++.+. .++.|.+||..+.. ... .+ +......+.|+|| +|+.+.. +++
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 566788999887775 36789999987322 211 11 1133568999997 7777663 588
Q ss_pred EEEEecCCCcceeEEE-ecccCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCceEEEEec----ccCccceeeeecC
Q 001349 835 IKVWTGRGSILHLIQQ-IREHTKAVTGLAILQSG-EMLYSGSLDKTARVWSIGNEEIHCVQVH----DIKDQIQNLAVSN 908 (1094)
Q Consensus 835 I~vWd~~t~~~~~~~~-l~~H~~~V~sv~fspdg-~~LaSgs~DgtI~vWdi~~~~~~~~~~~----~~~~~V~~v~~~~ 908 (1094)
|.++| .++ +.+.+ +.- .+ ++.+.|++ ..+++.+.||++.+||. +++....... ....++..
T Consensus 150 v~viD-~t~--~~~~~~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~----- 216 (373)
T 2mad_H 150 VGLVV-QGG--SSDDQLLSS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLT----- 216 (373)
T ss_pred EEEEE-CCC--CEEeEEcCC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceee-----
Confidence 99999 988 56666 532 22 24555654 46677788999999999 7653211100 00011000
Q ss_pred ceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEE--eccc----eeecCCCC
Q 001349 909 SILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATI--QTGH----RKLLGKAN 982 (1094)
Q Consensus 909 ~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~--~~~~----~~~~~h~~ 982 (1094)
...|.+++.. ++..+.++.+.+.|+.++..... +... ....-...
T Consensus 217 -~~~~~~~~~~----------------------------~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~ 267 (373)
T 2mad_H 217 -QPAQANKSGR----------------------------IVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPG 267 (373)
T ss_pred -cceeEecCCE----------------------------EEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecC
Confidence 0113333332 33333566777777765432111 0000 00000112
Q ss_pred CeEEEEEeCCccEEEEEECC---------CCEEEEEECCCCeEEEEecCCCCEEEEEEeCC---EEEEEE-cCCeEEEEE
Q 001349 983 PVHALQVHNGLVYTASTSLD---------GAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE---LVYLGC-KGGTVEIWD 1049 (1094)
Q Consensus 983 ~V~sl~fs~~~~~las~s~D---------g~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd---~l~sgs-~dg~I~vwd 1049 (1094)
....+.+++++..+.....+ ++.|.++|..+++.+.++.......+++|+|| .++++. .++.|.|||
T Consensus 268 g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD 347 (373)
T 2mad_H 268 GWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYD 347 (373)
T ss_pred ceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEE
Confidence 24457788877655554321 24899999999999999987778999999998 567766 589999999
Q ss_pred CCCCcEEEEe
Q 001349 1050 QKRQIRIETL 1059 (1094)
Q Consensus 1050 ~~t~~~~~~l 1059 (1094)
..+++.+..+
T Consensus 348 ~~t~~vv~~i 357 (373)
T 2mad_H 348 AGAGDQDQST 357 (373)
T ss_pred CCCCCEEeee
Confidence 9999999884
No 315
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.72 E-value=2e-05 Score=85.44 Aligned_cols=246 Identities=10% Similarity=0.010 Sum_probs=147.6
Q ss_pred EEEEeeCCCCeEEEeCCcce-------eecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcceeEEEecccCC
Q 001349 787 KVLSNGHDSSADFWNHRELV-------HVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTK 856 (1094)
Q Consensus 787 ~l~s~s~dg~I~vWd~~~~~-------~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~ 856 (1094)
+|+.+.. +.|+.++..... ..+......+.+++|+++ ++++-..++.|.++|..++. ....+.....
T Consensus 3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~--~~~~~~~~~~ 79 (267)
T 1npe_A 3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE--PTTIIRQDLG 79 (267)
T ss_dssp EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC--CEEEECTTCC
T ss_pred EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC--cEEEEECCCC
Confidence 3444433 467777765211 112222345789999973 44455567899999998763 2223333335
Q ss_pred CeEEEEEecCCCEEE-EEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCC
Q 001349 857 AVTGLAILQSGEMLY-SGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS 935 (1094)
Q Consensus 857 ~V~sv~fspdg~~La-Sgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~ 935 (1094)
....+++++++..|+ +-...+.|.+++.+......+.... ... +..++++|++..
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~-~~~-------P~~i~vd~~~g~---------------- 135 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTG-LVN-------PRGIVTDPVRGN---------------- 135 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-CSS-------EEEEEEETTTTE----------------
T ss_pred CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECC-CCC-------ccEEEEeeCCCE----------------
Confidence 678999999765555 4455678999998764322221111 011 122336664443
Q ss_pred CCceEEEEeCCEEEEEEc---CCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECC
Q 001349 936 KYPKCLALVQGKVYCGCQ---DGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTS 1012 (1094)
Q Consensus 936 ~~v~~l~~s~~~l~sgs~---Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~ 1012 (1094)
++.+.. .+.|..+++...... .. ..........+++++++..+..+....+.|..+|..
T Consensus 136 ------------lyv~~~~~~~~~I~~~~~dg~~~~-~~-----~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~ 197 (267)
T 1npe_A 136 ------------LYWTDWNRDNPKIETSHMDGTNRR-IL-----AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPA 197 (267)
T ss_dssp ------------EEEEECCSSSCEEEEEETTSCCCE-EE-----ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred ------------EEEEECCCCCcEEEEEecCCCCcE-EE-----EECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecC
Confidence 333332 256666766532221 11 011224578899998765554444444599999997
Q ss_pred CCeEEEEecCCCCEEEEEEeCCEEEEEE-cCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCC
Q 001349 1013 NYNMVGSLPTLSEVRAMVVSSELVYLGC-KGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEE 1077 (1094)
Q Consensus 1013 ~~~~~~~~~~~~~v~~l~~spd~l~sgs-~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~ 1077 (1094)
.......+........+++..+.++.+. .++.|.++|..+++.+..+..+.......+++.|++.
T Consensus 198 g~~~~~~~~~~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 198 QPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EEEEEEEEECCCSEEEEEEETTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred CCceEEEecCCCCceEEEEeCCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 6544444444455678888877766666 4689999999999999988644333578888988874
No 316
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.71 E-value=6.7e-09 Score=116.10 Aligned_cols=50 Identities=20% Similarity=0.351 Sum_probs=44.9
Q ss_pred ceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCC
Q 001349 163 DFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTK 212 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~ 212 (1094)
...|+||++.+.+||+++|||.||..||..|+......||.||+.+....
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 47999999999999999999999999999999855678999999887543
No 317
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.67 E-value=4.2e-08 Score=102.65 Aligned_cols=195 Identities=12% Similarity=0.138 Sum_probs=152.6
Q ss_pred HHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHh
Q 001349 394 ESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCM 473 (1094)
Q Consensus 394 ~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~ 473 (1094)
|+|+.+|.+.+.. -+..|...|..|.. .+.+++..+++.|+++.|++.|+.++.+.+..|+.+|.++.
T Consensus 15 ~~l~~LL~s~~~~-------v~~~a~~~L~~l~~-----~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 82 (210)
T 4db6_A 15 PQMVQQLNSPDQQ-------ELQSALRKLSQIAS-----GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 82 (210)
T ss_dssp HHHHHHTTCSCHH-------HHHHHHHHHHHHHT-----SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCHH-------HHHHHHHHHHHHHc-----CCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 6777777654322 14556666776632 34577888999999999999999999999999999998888
Q ss_pred hccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCcc
Q 001349 474 QEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQ 553 (1094)
Q Consensus 474 ~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~ 553 (1094)
..+...+..+.+.+.+++++.+|.+.+...+..|...|..+...+ ....+.+-+.|.++. |+.+|+...++-
T Consensus 83 ~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-----~~~~~~~~~~~~i~~---L~~ll~~~~~~v 154 (210)
T 4db6_A 83 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-----NEQIQAVIDAGALPA---LVQLLSSPNEQI 154 (210)
T ss_dssp TSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-----HHHHHHHHHTTHHHH---HHHHTTCSCHHH
T ss_pred cCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCC-----HHHHHHHHHcCcHHH---HHHHHcCCCHHH
Confidence 788889999999999999999999998888999999999987642 223344455665555 888888877777
Q ss_pred chhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhccc
Q 001349 554 CPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQG 609 (1094)
Q Consensus 554 ~~~~a~~l~~l~~~~~~~~~~~~reea~~~~~~~l~~~~~~~~~~~~~~~~~~l~g 609 (1094)
+.-++..|.+|-.-.+..+..+...++++.|+..+.+ ....+|..|+.+|.+|+.
T Consensus 155 ~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 155 LQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH-ENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHhc
Confidence 8888899999877434455556677899999999985 456789999999999874
No 318
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.67 E-value=2.9e-09 Score=96.28 Aligned_cols=65 Identities=12% Similarity=0.275 Sum_probs=50.7
Q ss_pred ceeccCccccccCcEEc---CCcccccHHhHHHHHHh----CC---CCCCC--CCcC--CCCCCCCChhHHHHHHHHHHH
Q 001349 163 DFVCPITTHIFDDPVTL---ETGQTYERRAIQEWIER----GN---SSCPI--TRQK--LSSTKLPKTNYVLKRLIASWQ 228 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~~---~cGhtfc~~ci~~~~~~----~~---~~CP~--c~~~--~~~~~~~~pN~~l~~~i~~~~ 228 (1094)
.+.||||++.+.+|+++ +|||+||+.|+..++.. +. ..||. |+.. ++...+ .+....+++++|.
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i--~~ll~~~~~~ky~ 82 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEI--ECMVAAEIMQRYK 82 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHH--HHHSCHHHHHHHH
T ss_pred CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHH--HHHCCHHHHHHHH
Confidence 78999999999999875 79999999999998873 22 35999 9988 554433 3555567777777
Q ss_pred H
Q 001349 229 E 229 (1094)
Q Consensus 229 ~ 229 (1094)
+
T Consensus 83 ~ 83 (94)
T 1wim_A 83 K 83 (94)
T ss_dssp H
T ss_pred H
Confidence 5
No 319
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.66 E-value=8.7e-07 Score=110.58 Aligned_cols=235 Identities=13% Similarity=0.112 Sum_probs=139.7
Q ss_pred cccccccCcEEEEe-----eCCCCeEEEeCCcceeecccCCCc--EEEEEEeCC--EEEEEECCC-------------eE
Q 001349 778 YSPLAFEMVKVLSN-----GHDSSADFWNHRELVHVDSSENGK--VLSIACFRD--KIFSGHSDG-------------TI 835 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~-----s~dg~I~vWd~~~~~~~~~~h~~~--V~~l~fspd--~LaSgs~Dg-------------~I 835 (1094)
...+++||++++.+ +....|++||+.+..... .+... ...++|+ | .|+.++.+. .|
T Consensus 133 ~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~-~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v 210 (693)
T 3iuj_A 133 QLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLE-TPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKV 210 (693)
T ss_dssp EEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEE-EEEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEE
T ss_pred EEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCc-cccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEE
Confidence 34688899988853 333679999987432211 12222 3567898 6 777777764 39
Q ss_pred EEEecCCCcc--eeEEEecc-cCCCeEEEEEecCCCEEEEEeC----CCcEEEEECCCCc--eEEEEecccCccceeeee
Q 001349 836 KVWTGRGSIL--HLIQQIRE-HTKAVTGLAILQSGEMLYSGSL----DKTARVWSIGNEE--IHCVQVHDIKDQIQNLAV 906 (1094)
Q Consensus 836 ~vWd~~t~~~--~~~~~l~~-H~~~V~sv~fspdg~~LaSgs~----DgtI~vWdi~~~~--~~~~~~~~~~~~V~~v~~ 906 (1094)
++|++.++.. .++..... |...+.++.|+|||++|+..+. +..|++||+.++. ...+.. .......
T Consensus 211 ~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~--~~~~~~~--- 285 (693)
T 3iuj_A 211 YFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQG--DLDADVS--- 285 (693)
T ss_dssp EEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEEC--SSSSCEE---
T ss_pred EEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeC--CCCceEE---
Confidence 9999987643 23444344 5666889999999998865432 2589999998763 222221 1111111
Q ss_pred cCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEE
Q 001349 907 SNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHA 986 (1094)
Q Consensus 907 ~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~s 986 (1094)
.++++|..+.+.+..+ ...+.|..+|+.++.... ...+..|...+.
T Consensus 286 -----~~~~~g~~l~~~t~~~------------------------~~~~~l~~~d~~~~~~~~----~~~l~~~~~~~~- 331 (693)
T 3iuj_A 286 -----LVDNKGSTLYLLTNRD------------------------APNRRLVTVDAANPGPAH----WRDLIPERQQVL- 331 (693)
T ss_dssp -----EEEEETTEEEEEECTT------------------------CTTCEEEEEETTSCCGGG----CEEEECCCSSCE-
T ss_pred -----EEeccCCEEEEEECCC------------------------CCCCEEEEEeCCCCCccc----cEEEecCCCCEE-
Confidence 1455555432221110 123678899998765310 022334444444
Q ss_pred EEEeCCccEEEEEECCCC--EEEEEECCCCeEEEEec--CCCCEEEEEEeCC--EEEEEEcC----CeEEEEECCCCcE
Q 001349 987 LQVHNGLVYTASTSLDGA--AVKMWSTSNYNMVGSLP--TLSEVRAMVVSSE--LVYLGCKG----GTVEIWDQKRQIR 1055 (1094)
Q Consensus 987 l~fs~~~~~las~s~Dg~--~I~iwd~~~~~~~~~~~--~~~~v~~l~~spd--~l~sgs~d----g~I~vwd~~t~~~ 1055 (1094)
.|++++..++....+++ .|++||+..+ ....+. ....+..+.++++ .++....+ ++|+.||+.+++.
T Consensus 332 -~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 332 -TVHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp -EEEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred -EEEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 77777766666554443 6889998754 344444 4456777777766 33333322 8899999988763
No 320
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.65 E-value=2.1e-06 Score=95.37 Aligned_cols=224 Identities=13% Similarity=0.113 Sum_probs=137.0
Q ss_pred cccccCc-EEEEeeCCCCeEEEeCCcceeecccCCCcEEEEEEeCC-EEEEE-ECCCeEEEEecCCCcceeEEE-ecc-c
Q 001349 780 PLAFEMV-KVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD-KIFSG-HSDGTIKVWTGRGSILHLIQQ-IRE-H 854 (1094)
Q Consensus 780 ~~~~d~~-~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~fspd-~LaSg-s~Dg~I~vWd~~t~~~~~~~~-l~~-H 854 (1094)
.+.+++. .+++...++.|..|+.......+..+.+.+..++++++ .++.+ ..++.|.+||.. +....+.. ..+ .
T Consensus 51 ~~~~~g~~l~~~d~~~~~i~~~~~~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~ 129 (305)
T 3dr2_A 51 AWWEAQRTLVWSDLVGRRVLGWREDGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKR 129 (305)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEETTSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEE
T ss_pred eEeCCCCEEEEEECCCCEEEEEeCCCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCc
Confidence 3556777 56667778899999886545556667788999999986 44444 456889999986 53222211 111 1
Q ss_pred CCCeEEEEEecCCCEEEE----EeC-------------CCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCC
Q 001349 855 TKAVTGLAILQSGEMLYS----GSL-------------DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQG 917 (1094)
Q Consensus 855 ~~~V~sv~fspdg~~LaS----gs~-------------DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg 917 (1094)
...++.++++++|++++| |.. .+.|..||..+++...+. . .... ..++|+|||
T Consensus 130 ~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~-~~~p-------~gl~~spdg 199 (305)
T 3dr2_A 130 LNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--D-LDHP-------NGLAFSPDE 199 (305)
T ss_dssp CSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--E-ESSE-------EEEEECTTS
T ss_pred cCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--c-CCCC-------cceEEcCCC
Confidence 235678999999998886 332 245777777666544332 1 1112 234588888
Q ss_pred CeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceee-cCCCCCeEEEEEeCCccEE
Q 001349 918 AGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKL-LGKANPVHALQVHNGLVYT 996 (1094)
Q Consensus 918 ~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~-~~h~~~V~sl~fs~~~~~l 996 (1094)
+.+.+...... ...++.|..||+..+. +... ..+ .........+.+++++.+.
T Consensus 200 ~~lyv~~~~~~----------------------~~~~~~i~~~~~~~~~-l~~~---~~~~~~~~~~pdgi~~d~~G~lw 253 (305)
T 3dr2_A 200 QTLYVSQTPEQ----------------------GHGSVEITAFAWRDGA-LHDR---RHFASVPDGLPDGFCVDRGGWLW 253 (305)
T ss_dssp SEEEEEECCC-------------------------CCCEEEEEEEETTE-EEEE---EEEECCSSSCCCSEEECTTSCEE
T ss_pred CEEEEEecCCc----------------------CCCCCEEEEEEecCCC-ccCC---eEEEECCCCCCCeEEECCCCCEE
Confidence 86433322100 0012567777776543 1100 111 1122345678889888865
Q ss_pred EEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcCCe
Q 001349 997 ASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGT 1044 (1094)
Q Consensus 997 as~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg~ 1044 (1094)
++. .+ .|.+||. +++.+..+.....+..++|+++ .+++++.++.
T Consensus 254 v~~-~~--gv~~~~~-~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 254 SSS-GT--GVCVFDS-DGQLLGHIPTPGTASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp ECC-SS--EEEEECT-TSCEEEEEECSSCCCEEEECTTSCEEEEEETTEE
T ss_pred Eec-CC--cEEEECC-CCCEEEEEECCCceeEEEEeCCCCEEEEEcCCeE
Confidence 554 33 5999998 5777777775557889999876 6777776543
No 321
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.64 E-value=7.4e-09 Score=89.26 Aligned_cols=44 Identities=14% Similarity=0.229 Sum_probs=39.3
Q ss_pred ceeccCccccccCcEEcCCccc-ccHHhHHHHHHhCCCCCCCCCcCCCCC
Q 001349 163 DFVCPITTHIFDDPVTLETGQT-YERRAIQEWIERGNSSCPITRQKLSST 211 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~~~cGht-fc~~ci~~~~~~~~~~CP~c~~~~~~~ 211 (1094)
++.||||++.+.+||+++|||. ||+.|+.. ...||.||+.+...
T Consensus 25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCCC
T ss_pred CCCCCcCCCCCCCEEEecCCCHHHHHHHhhC-----CCCCccCCceecCc
Confidence 7889999999999999999999 99999964 35799999988753
No 322
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.63 E-value=7.9e-08 Score=106.13 Aligned_cols=180 Identities=17% Similarity=0.116 Sum_probs=141.8
Q ss_pred hhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHH-hhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHH
Q 001349 415 KSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVIS-SLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVM 493 (1094)
Q Consensus 415 ~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~ 493 (1094)
+..|+..|..|+. +..|+..+++.|+++.|+. .|++++.+-|..|+.+|..+.+.+..||..+.+.+.++||+
T Consensus 57 k~~Al~~L~~lv~------~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll 130 (296)
T 1xqr_A 57 REGALELLADLCE------NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL 130 (296)
T ss_dssp HHHHHHHHHHHHT------SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHh------ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHH
Confidence 4455666666633 3357888899999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHhc-CCchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCC
Q 001349 494 ESFMAA-SDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRK 572 (1094)
Q Consensus 494 ~l~~~~-~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~ 572 (1094)
.||.+. ....|..|+.+|..+...+.. ..+.+.+.|.++. |+.+|++..++=+--+|.+|.+|-.-.+..+
T Consensus 131 ~LL~~~~~~~v~~~A~~ALsnl~~~~~~-----~~~~~~~~ggi~~---L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~ 202 (296)
T 1xqr_A 131 RLLDRDACDTVRVKALFAISCLVREQEA-----GLLQFLRLDGFSV---LMRAMQQQVQKLKVKSAFLLQNLLVGHPEHK 202 (296)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHTTCHH-----HHHHHHHTTHHHH---HHHHHHSSCHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHHccCCCHHHHHHHHHHHHHHHcCCcH-----HHHHHHHCCCHHH---HHHHHcCCCHHHHHHHHHHHHHHHhCChHHH
Confidence 999975 556788889999998765332 2233444566654 8888888777777788888888765322234
Q ss_pred CCccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhccc
Q 001349 573 MSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQG 609 (1094)
Q Consensus 573 ~~~~reea~~~~~~~l~~~~~~~~~~~~~~~~~~l~g 609 (1094)
..+..+++++.|+..|.+.+ ..+|+.|+++|.++..
T Consensus 203 ~~vv~~g~i~~Lv~LL~~~d-~~v~~~al~aL~~l~~ 238 (296)
T 1xqr_A 203 GTLCSMGMVQQLVALVRTEH-SPFHEHVLGALCSLVT 238 (296)
T ss_dssp HHHHHTTHHHHHHHHHTSCC-STHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHcCCC-hhHHHHHHHHHHHHHh
Confidence 45557889999999998875 4679999999999874
No 323
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.63 E-value=3.3e-07 Score=101.19 Aligned_cols=202 Identities=7% Similarity=0.094 Sum_probs=146.3
Q ss_pred HHHHHHHHHhhhcc-----------ccchHhHHHHHHHHHHHHHhccchHHHHhhchhHHHhhhHhhhccCCchHHHHHH
Q 001349 266 ITELKHAITSLCMS-----------EILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEAT 334 (1094)
Q Consensus 266 ~~~l~~~i~~L~~s-----------~~l~~~e~a~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~a 334 (1094)
.+.++.++.-|.+. ...++...|+..+..+....+....+...+..|. ++..|+.+.++.+++.|
T Consensus 27 ~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~----Lv~~lL~s~~~~vr~~A 102 (296)
T 1xqr_A 27 VEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHL----LVGRYLEAGAAGLRWRA 102 (296)
T ss_dssp HHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHH----HHHTTTTCSSHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHH----HHHHHHcCCCHHHHHHH
Confidence 56677777777653 2233456676667666654432344555555554 55534457899999999
Q ss_pred HHHHHhhcccccchhhhhccCCCcHHHHHHHHhcChHHHHHHHHhcCCChHHHHHhhhhHHHHHHHHhccccccccccCc
Q 001349 335 IFLLSELGSRDKSVIHTLTRVESDVERIVALFKKGLLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKP 414 (1094)
Q Consensus 335 v~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g~~~Aa~~l~~L~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~ 414 (1094)
+.+|.++...++...+.+.+ .+.+|+|+.+|.+..+. .-
T Consensus 103 a~~Lg~ia~~n~~~~~~vv~-----------------------------------~g~l~~Ll~LL~~~~~~------~v 141 (296)
T 1xqr_A 103 AQLIGTCSQNVAAIQEQVLG-----------------------------------LGALRKLLRLLDRDACD------TV 141 (296)
T ss_dssp HHHHHHHHTTCHHHHHHHHH-----------------------------------TTHHHHHHHHHHHCSCH------HH
T ss_pred HHHHHHHHhCCHHHHHHHHH-----------------------------------CCCHHHHHHHHccCCCH------HH
Confidence 99999997766655544442 23446666666653211 12
Q ss_pred hhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHH
Q 001349 415 KSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVME 494 (1094)
Q Consensus 415 ~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~ 494 (1094)
+..|+..|..|..++ +.+..+++..||++.|+..|.+++.+-+..|+.+|...+..+...+.++.+.+.+++|+.
T Consensus 142 ~~~A~~ALsnl~~~~-----~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~ 216 (296)
T 1xqr_A 142 RVKALFAISCLVREQ-----EAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVA 216 (296)
T ss_dssp HHHHHHHHHHHHTTC-----HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-----cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHH
Confidence 456666777764433 234556777899999999999999999999999998888888889999999999999999
Q ss_pred HHHhcCCchhHHHHHHHHHHHhc
Q 001349 495 SFMAASDGERFEIVCFLSELVKL 517 (1094)
Q Consensus 495 l~~~~~~~~~~~~~~~l~el~~~ 517 (1094)
||.+.+...+..|+..|..|+..
T Consensus 217 LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 217 LVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHcCCChhHHHHHHHHHHHHHhC
Confidence 99999999999999999999876
No 324
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.62 E-value=7.7e-06 Score=101.62 Aligned_cols=264 Identities=14% Similarity=0.173 Sum_probs=157.5
Q ss_pred eCCEEEEEECCCeEEEEecCCCcceeEEEecccCCC----------e-EEEEEecCCCEEEEEeCCCcEEEEECCCCceE
Q 001349 822 FRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKA----------V-TGLAILQSGEMLYSGSLDKTARVWSIGNEEIH 890 (1094)
Q Consensus 822 spd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~----------V-~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~ 890 (1094)
..+.++.++.++.|..+|..+| +.+..+..+... + ..+.+ ++..++.++.|+.|..||..+|+..
T Consensus 69 ~~g~vyv~~~~~~v~AlD~~tG--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~ 144 (689)
T 1yiq_A 69 VDGVMYTTGPFSVVYALDARDG--RLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRA 144 (689)
T ss_dssp ETTEEEEECGGGCEEEEETTTC--CEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred ECCEEEEEcCCCeEEEEECCCC--ceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEe
Confidence 4568888999999999999999 677776543221 1 11222 4568889999999999999999743
Q ss_pred EEEecc-cCccceeee----ecCceEEEee-------CCCeEEEEEeCCeEEEEcCC----C------------------
Q 001349 891 CVQVHD-IKDQIQNLA----VSNSILCFIP-------QGAGIKVHLRNGKTKLLNSS----K------------------ 936 (1094)
Q Consensus 891 ~~~~~~-~~~~V~~v~----~~~~~~~fsp-------dg~~l~~~~~~g~i~l~~~~----~------------------ 936 (1094)
-..... .......+. +....+.+.. +|...+.-..+|.. +|... .
T Consensus 145 W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~-~W~~~~~~~~p~~~~~~~~~~~~~~~~~ 223 (689)
T 1yiq_A 145 WSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKE-AWRFYTVPGDPKLPPEGKGMEIAAKTWF 223 (689)
T ss_dssp EEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCE-EEEEESSCCCTTSCCCSHHHHHHHTTCC
T ss_pred eeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcE-EEEecccCCCcccccccccccccccccC
Confidence 222221 111101111 1111222211 22222222223332 22110 0
Q ss_pred ------------CceEEEEeC--CEEEEEEcCCe-------------------EEEEECCCCceeEEeccc-eeecC--C
Q 001349 937 ------------YPKCLALVQ--GKVYCGCQDGA-------------------IQEIDLATGTFATIQTGH-RKLLG--K 980 (1094)
Q Consensus 937 ------------~v~~l~~s~--~~l~sgs~Dg~-------------------I~iwDl~~~~~~~~~~~~-~~~~~--h 980 (1094)
.-..+.+++ +.+++++.++. |..||..+|+.+..+... ..... .
T Consensus 224 g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~ 303 (689)
T 1yiq_A 224 GDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTA 303 (689)
T ss_dssp SSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCC
T ss_pred CceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccC
Confidence 001355653 77888888764 999999999988654321 00000 1
Q ss_pred CCCeEEEEEeCCcc---EEEEEECCCCEEEEEECCCCeEEEEecCCC---------------------------------
Q 001349 981 ANPVHALQVHNGLV---YTASTSLDGAAVKMWSTSNYNMVGSLPTLS--------------------------------- 1024 (1094)
Q Consensus 981 ~~~V~sl~fs~~~~---~las~s~Dg~~I~iwd~~~~~~~~~~~~~~--------------------------------- 1024 (1094)
..++.......++. .++.++.+| .++++|..+|+.+.......
T Consensus 304 ~~~~~l~d~~~~G~~~~~v~~~~~~G-~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~ 382 (689)
T 1yiq_A 304 TQHMILAELPIDGKPRKVLMQAPKNG-FFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVT 382 (689)
T ss_dssp CSCEEEEEEEETTEEEEEEEECCTTS-EEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEES
T ss_pred CCCcEEEeeccCCcEEEEEEEECCCC-eEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeC
Confidence 12222222223443 677777776 99999999999875433110
Q ss_pred -------CEEEEEEeCC--EEEEEEc---------------------------------------------CCeEEEEEC
Q 001349 1025 -------EVRAMVVSSE--LVYLGCK---------------------------------------------GGTVEIWDQ 1050 (1094)
Q Consensus 1025 -------~v~~l~~spd--~l~sgs~---------------------------------------------dg~I~vwd~ 1050 (1094)
.-..++++|+ .+++++. +|.|+.||+
T Consensus 383 p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~ 462 (689)
T 1yiq_A 383 PAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDP 462 (689)
T ss_dssp SCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEET
T ss_pred CCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEEC
Confidence 0112678886 5555422 378999999
Q ss_pred CCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1051 KRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1051 ~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
.+|+.+..+.. ...+..-.++..+.++++|+.||.|+.||.
T Consensus 463 ~tG~~~W~~~~--~~~~~~g~~~tagglvf~gt~dg~l~a~D~ 503 (689)
T 1yiq_A 463 VKQQAAWEVPY--VTIFNGGTLSTAGNLVFEGSADGRVIAYAA 503 (689)
T ss_dssp TTTEEEEEEEE--SSSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred CCCCeEeEccC--CCCccCccceECCCEEEEECCCCcEEEEEC
Confidence 99999888852 233444466778889999999999999996
No 325
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.61 E-value=2.9e-06 Score=94.67 Aligned_cols=249 Identities=13% Similarity=0.107 Sum_probs=151.5
Q ss_pred cEEEEeeCCCCeEEEeCCc-ceeecccCCCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEe
Q 001349 786 VKVLSNGHDSSADFWNHRE-LVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAIL 864 (1094)
Q Consensus 786 ~~l~s~s~dg~I~vWd~~~-~~~~~~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fs 864 (1094)
..+..++.+ +..||... .......+........+..+.++.++.+|.|..+|.. + ........+...+.++.+.
T Consensus 71 g~l~v~t~~--l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~l~v~t~~~~l~~~d~~-g--~~~~~~~~~~~~~~~~~~~ 145 (330)
T 3hxj_A 71 GTIYFGSDK--VYAINPDGTEKWRFDTKKAIVSDFTIFEDILYVTSMDGHLYAINTD-G--TEKWRFKTKKAIYATPIVS 145 (330)
T ss_dssp TEECCSSCE--EEEECCCGGGGGGSCC-----CCEEEETTEEEEECTTSEEEEECTT-S--CEEEEEECSSCCCSCCEEC
T ss_pred CcEEEecCc--EEEECCCCcEEEEEECCCCcccCceEECCEEEEEecCCEEEEEcCC-C--CEEEEEcCCCceeeeeEEc
Confidence 344445444 77777541 1112222222233334446688888889999999988 6 4555555555566777777
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEe
Q 001349 865 QSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALV 944 (1094)
Q Consensus 865 pdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s 944 (1094)
++|. ++.++.++.|..||.. ++........ ...+.++. +.+
T Consensus 146 ~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~-~~~~~~~~-------~d~----------------------------- 186 (330)
T 3hxj_A 146 EDGT-IYVGSNDNYLYAINPD-GTEKWRFKTN-DAITSAAS-------IGK----------------------------- 186 (330)
T ss_dssp TTSC-EEEECTTSEEEEECTT-SCEEEEEECS-SCCCSCCE-------ECT-----------------------------
T ss_pred CCCE-EEEEcCCCEEEEECCC-CCEeEEEecC-CCceeeeE-------EcC-----------------------------
Confidence 7776 5557777889999988 5422111111 11111111 222
Q ss_pred CCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecC-C
Q 001349 945 QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT-L 1023 (1094)
Q Consensus 945 ~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~-~ 1023 (1094)
++.+++++ +.|..|| .+++..... ......+.++..++++.+.++. .++ .+..+|. ++.....+.. .
T Consensus 187 ~g~l~v~t--~~l~~~d-~~g~~~~~~------~~~~~~~~~~~~~~~g~l~v~t-~~~-gl~~~~~-~g~~~~~~~~~~ 254 (330)
T 3hxj_A 187 DGTIYFGS--DKVYAIN-PDGTEKWNF------YAGYWTVTRPAISEDGTIYVTS-LDG-HLYAINP-DGTEKWRFKTGK 254 (330)
T ss_dssp TCCEEEES--SSEEEEC-TTSCEEEEE------CCSSCCCSCCEECTTSCEEEEE-TTT-EEEEECT-TSCEEEEEECSS
T ss_pred CCEEEEEe--CEEEEEC-CCCcEEEEE------ccCCcceeceEECCCCeEEEEc-CCC-eEEEECC-CCCEeEEeeCCC
Confidence 23466666 8889999 677665332 2223557788888886655543 344 7888874 5666666653 3
Q ss_pred CCEEEEEEeCC-EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1024 SEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1024 ~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
..+..+.+.++ .+++++.+|.|..+|. +++.+..+. .....+.++...++|. |..++.+|.+++...
T Consensus 255 ~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~~~~~~~-~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~ 322 (330)
T 3hxj_A 255 RIESSPVIGNTDTIYFGSYDGHLYAINP-DGTEKWNFE-TGSWIIATPVIDENGT-IYFGTRNGKFYALFN 322 (330)
T ss_dssp CCCSCCEECTTSCEEEECTTCEEEEECT-TSCEEEEEE-CSSCCCSCCEECTTCC-EEEECTTSCEEEEEC
T ss_pred CccccceEcCCCeEEEecCCCCEEEECC-CCcEEEEEE-cCCccccceEEcCCCE-EEEEcCCCeEEEEec
Confidence 33445566644 8899999999999996 677777663 3345677888877776 566889999988653
No 326
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.61 E-value=6.2e-09 Score=100.81 Aligned_cols=55 Identities=18% Similarity=0.488 Sum_probs=48.4
Q ss_pred CCceeccCccccccCc-------EEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChh
Q 001349 161 PKDFVCPITTHIFDDP-------VTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTN 217 (1094)
Q Consensus 161 ~~~~~CpIc~~~~~dP-------v~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN 217 (1094)
++++.||||++.|.+| +.++|||+||..||.+|+.. ..+||.||..+..+++. |+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~-~~ 131 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYH-PI 131 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGGGEE-EE
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChhcce-ee
Confidence 3478899999999998 88999999999999999998 45899999999887765 54
No 327
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=2.5e-08 Score=87.23 Aligned_cols=47 Identities=21% Similarity=0.457 Sum_probs=40.0
Q ss_pred ceeccCccccccC--------------cEEc-CCcccccHHhHHHHHHhCCCCCCCCCcCCCC
Q 001349 163 DFVCPITTHIFDD--------------PVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLSS 210 (1094)
Q Consensus 163 ~~~CpIc~~~~~d--------------Pv~~-~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~ 210 (1094)
+..|+||++.|.+ ++++ +|||.|+..||.+|+.. +.+||+||+.+..
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVV 76 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcch
Confidence 6779999999987 4454 69999999999999987 4589999998754
No 328
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.56 E-value=1.3e-06 Score=106.12 Aligned_cols=294 Identities=12% Similarity=0.070 Sum_probs=190.5
Q ss_pred HHHHHHHHHHHHHhccchHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHH
Q 001349 286 EMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVAL 365 (1094)
Q Consensus 286 e~a~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~l 365 (1094)
..|+..+.++|.....+. .....+...+++.|..+. ...++.|+..|..+ +.++.+++.|....+.+..|+.+
T Consensus 312 ~lAavvL~KL~~~~~~~~-----~si~~La~~~~~~L~~~~-~~~~~~AvEgLaYL-Sl~~~VKe~L~~d~~~L~~Lv~l 384 (778)
T 3opb_A 312 IYSALVLVKTWSFTKLTC-----INLKQLSEIFINAISRRI-VPKVEMSVEALAYL-SLKASVKIMIRSNESFTEILLTM 384 (778)
T ss_dssp HHHHHHHHHHTGGGTCTT-----CCHHHHHHHHHHHTTTCC-HHHHHHHHHHHHHH-TTSSHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCc-----CcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHH-hCCHHHHHHHHhCHHHHHHHHHH
Confidence 445555666665443210 112234555666777643 33499999999999 77888999999888889999999
Q ss_pred Hhc-C----hHHHHHHHHhcCCChHHHHH-hhhhHHHHHHHHhc-cccccccccCchhhHHHHHHHHhcCCccccccc-c
Q 001349 366 FKK-G----LLEAVVLIDLLRPSTRTLIE-MDMMESLMTVIKKK-EEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSS-I 437 (1094)
Q Consensus 366 Lk~-g----~~~Aa~~l~~L~~~~~~~~~-~~~~~~Ll~~l~~~-~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~-~ 437 (1094)
|+. + ...|+.+|.+|....+++.. +..+.-|....... .+. .|+++.+ .. -....+ +
T Consensus 385 lk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~------~~~d~~~--~~-------~~~v~~~~ 449 (778)
T 3opb_A 385 IKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAA------DKVGAEK--AA-------KEDILLFN 449 (778)
T ss_dssp HTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------------CCTHH--HH-------HHHHHHHH
T ss_pred HhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCccc------Ccccccc--cc-------hHHHHHHH
Confidence 995 3 55788899999655443322 11111111111110 000 1111111 10 011223 7
Q ss_pred hhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhcCCc---hhHHHHHHHHHH
Q 001349 438 ANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDG---ERFEIVCFLSEL 514 (1094)
Q Consensus 438 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~l~el 514 (1094)
+..+...|++|.|+.++.+++..-|..|+.+|+... .+..+|..+.+.|++++|+++|.+++.. .|..|..+|..|
T Consensus 450 ~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS-~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArL 528 (778)
T 3opb_A 450 EKYILRTELISFLKREMHNLSPNCKQQVVRIIYNIT-RSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRM 528 (778)
T ss_dssp HHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHH-TSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence 889999999999999999999999999999988774 6799999999999999999999998655 688888888888
Q ss_pred HhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCc--------------cchhHHHHHHhhhcccCC----CCCCcc
Q 001349 515 VKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHD--------------QCPVVAGLLLQLDLLAEP----RKMSIY 576 (1094)
Q Consensus 515 ~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~--------------~~~~~a~~l~~l~~~~~~----~~~~~~ 576 (1094)
+--.- .+. .+..........-|+..|+..+.. |+-=++..|..|....++ -+..+.
T Consensus 529 lis~n----p~~--~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii 602 (778)
T 3opb_A 529 LIFTN----PGL--IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIV 602 (778)
T ss_dssp HHTSC----HHH--HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HhcCC----HHH--HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHH
Confidence 74311 111 121111234455577777622221 133577888899887632 235566
Q ss_pred HH-HHHHHHHHHhhcCCChHHHHHHHHHHHhccc
Q 001349 577 RE-EAIDTLISCLRNSDYPAAQLAAAKTIVSLQG 609 (1094)
Q Consensus 577 re-ea~~~~~~~l~~~~~~~~~~~~~~~~~~l~g 609 (1094)
++ +++..|.+.|.++ ...+|..|+.++.||..
T Consensus 603 ~~~ga~~~L~~LL~s~-n~~VrrAA~elI~NL~~ 635 (778)
T 3opb_A 603 STKVYWSTIENLMLDE-NVPLQRSTLELISNMMS 635 (778)
T ss_dssp HSHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHT
T ss_pred HhcCHHHHHHHHHhCC-CHHHHHHHHHHHHHHhC
Confidence 84 8999999998864 55789999999999884
No 329
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.56 E-value=8.3e-07 Score=99.16 Aligned_cols=249 Identities=12% Similarity=0.063 Sum_probs=152.1
Q ss_pred CcEEEEeeCCCCeEEEeCC-cceeecccCCCcEEEEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEE
Q 001349 785 MVKVLSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLA 862 (1094)
Q Consensus 785 ~~~l~s~s~dg~I~vWd~~-~~~~~~~~h~~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~ 862 (1094)
...+..++.++.|..||.. ........+...+.++...++ .++.++.+ |..||. ++ ..+..+..+........
T Consensus 30 ~g~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~--l~~~d~-~g--~~~~~~~~~~~~~~~~~ 104 (330)
T 3hxj_A 30 NGTIYLGSSNKNLYAINTDGSVKWFFKSGEIIECRPSIGKDGTIYFGSDK--VYAINP-DG--TEKWRFDTKKAIVSDFT 104 (330)
T ss_dssp TSCEECSSTTTTTEEECTTSCEEESSCGGGEEEECCEETTTTEECCSSCE--EEEECC-CG--GGGGGSCC-----CCEE
T ss_pred CCeEEEEcCCCEEEEECCCCcEEEEEecCCCcccceEEecCCcEEEecCc--EEEECC-CC--cEEEEEECCCCcccCce
Confidence 4567777788888899932 222222233445567777654 77777666 888886 44 23333322222223333
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEE
Q 001349 863 ILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLA 942 (1094)
Q Consensus 863 fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~ 942 (1094)
+. +..++.++.++.|..+|.. ++....... ....+.++. +.+
T Consensus 105 ~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~-~~~~~~~~~-------~~~--------------------------- 146 (330)
T 3hxj_A 105 IF--EDILYVTSMDGHLYAINTD-GTEKWRFKT-KKAIYATPI-------VSE--------------------------- 146 (330)
T ss_dssp EE--TTEEEEECTTSEEEEECTT-SCEEEEEEC-SSCCCSCCE-------ECT---------------------------
T ss_pred EE--CCEEEEEecCCEEEEEcCC-CCEEEEEcC-CCceeeeeE-------EcC---------------------------
Confidence 33 5567778888999999988 542211111 111111111 112
Q ss_pred EeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-
Q 001349 943 LVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP- 1021 (1094)
Q Consensus 943 ~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~- 1021 (1094)
++.+++|+.++.|..||.. ++....+. .....+.++.+.+++.+.++. + .|..|| .+++....+.
T Consensus 147 --~g~l~vgt~~~~l~~~d~~-g~~~~~~~------~~~~~~~~~~~d~~g~l~v~t---~-~l~~~d-~~g~~~~~~~~ 212 (330)
T 3hxj_A 147 --DGTIYVGSNDNYLYAINPD-GTEKWRFK------TNDAITSAASIGKDGTIYFGS---D-KVYAIN-PDGTEKWNFYA 212 (330)
T ss_dssp --TSCEEEECTTSEEEEECTT-SCEEEEEE------CSSCCCSCCEECTTCCEEEES---S-SEEEEC-TTSCEEEEECC
T ss_pred --CCEEEEEcCCCEEEEECCC-CCEeEEEe------cCCCceeeeEEcCCCEEEEEe---C-EEEEEC-CCCcEEEEEcc
Confidence 3457788888999999998 77654322 223456667777666655544 3 599999 7777776665
Q ss_pred CCCCEEEEEEeCC-EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1022 TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1022 ~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
....+.++.++++ .+++++.++.|..+|. +++.+..+. .....+..+.+.+++ .|..++.+|.|..+|.
T Consensus 213 ~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~-~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 213 GYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFK-TGKRIESSPVIGNTD-TIYFGSYDGHLYAINP 282 (330)
T ss_dssp SSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEE-CSSCCCSCCEECTTS-CEEEECTTCEEEEECT
T ss_pred CCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEee-CCCCccccceEcCCC-eEEEecCCCCEEEECC
Confidence 4456778888888 8899999999999984 566666663 333344556666566 4667778888888763
No 330
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.54 E-value=3.7e-08 Score=81.77 Aligned_cols=46 Identities=22% Similarity=0.301 Sum_probs=41.6
Q ss_pred ceeccCccccccCcEEc--CCccc-ccHHhHHHHHHhCCCCCCCCCcCCC
Q 001349 163 DFVCPITTHIFDDPVTL--ETGQT-YERRAIQEWIERGNSSCPITRQKLS 209 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~~--~cGht-fc~~ci~~~~~~~~~~CP~c~~~~~ 209 (1094)
+..|+||++-+.|++.+ +|||. ||..|+.+|+.. +..||.||+.+.
T Consensus 8 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 56 (64)
T 2vje_A 8 IEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQ 56 (64)
T ss_dssp GSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCC
T ss_pred cCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchh
Confidence 67899999999999987 99999 899999999976 457999999875
No 331
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.49 E-value=5.5e-08 Score=80.46 Aligned_cols=46 Identities=17% Similarity=0.278 Sum_probs=41.5
Q ss_pred ceeccCccccccCcEEc--CCccc-ccHHhHHHHHHhCCCCCCCCCcCCC
Q 001349 163 DFVCPITTHIFDDPVTL--ETGQT-YERRAIQEWIERGNSSCPITRQKLS 209 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~~--~cGht-fc~~ci~~~~~~~~~~CP~c~~~~~ 209 (1094)
+..|+||++-+.|++++ +|||. ||..|+.+|+.. ...||+||+++.
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCC
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhh
Confidence 67899999999999988 99998 999999999876 457999999875
No 332
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.48 E-value=3.7e-05 Score=95.20 Aligned_cols=297 Identities=11% Similarity=0.106 Sum_probs=160.7
Q ss_pred cCcEEEEeeCCCCeEEEeCCcceee--cccCC----------Cc-EEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEE
Q 001349 784 EMVKVLSNGHDSSADFWNHRELVHV--DSSEN----------GK-VLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQ 850 (1094)
Q Consensus 784 d~~~l~s~s~dg~I~vWd~~~~~~~--~~~h~----------~~-V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~ 850 (1094)
.+..++.++.++.|.-+|..+.... ...+. .. -..+++..+.++.++.||.|..+|..+| +.+..
T Consensus 65 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG--~~~W~ 142 (668)
T 1kv9_A 65 HDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTG--KAIWS 142 (668)
T ss_dssp ETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTC--CEEEE
T ss_pred ECCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCC--CEeee
Confidence 3455666666777777776522211 11110 01 1234556678999999999999999999 56666
Q ss_pred ecccCC-CeEEEEEec--CCCEEEEEeC------CCcEEEEECCCCceEEEEec-cc-Ccc------------------c
Q 001349 851 IREHTK-AVTGLAILQ--SGEMLYSGSL------DKTARVWSIGNEEIHCVQVH-DI-KDQ------------------I 901 (1094)
Q Consensus 851 l~~H~~-~V~sv~fsp--dg~~LaSgs~------DgtI~vWdi~~~~~~~~~~~-~~-~~~------------------V 901 (1094)
+..... ....+..+| .+..++.++. +|.|..||..+|+..-.... .. ... +
T Consensus 143 ~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~ 222 (668)
T 1kv9_A 143 QQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQY 222 (668)
T ss_dssp EECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCH
T ss_pred eccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccce
Confidence 543210 001111111 1334555543 58999999999974322211 10 000 0
Q ss_pred eeeeecC---ceEEEeeCCCeEEEEEeCC-------------------eEEEEcCCC---------------------Cc
Q 001349 902 QNLAVSN---SILCFIPQGAGIKVHLRNG-------------------KTKLLNSSK---------------------YP 938 (1094)
Q Consensus 902 ~~v~~~~---~~~~fspdg~~l~~~~~~g-------------------~i~l~~~~~---------------------~v 938 (1094)
....... ...++.|++..+.+...++ .+..++... ..
T Consensus 223 w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~ 302 (668)
T 1kv9_A 223 WKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQI 302 (668)
T ss_dssp HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCE
T ss_pred eeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCc
Confidence 0000000 1134555555555554433 244443211 01
Q ss_pred eEEEE-eCC----EEEEEEcCCeEEEEECCCCceeEEeccce-----eec--------CCC-----------------CC
Q 001349 939 KCLAL-VQG----KVYCGCQDGAIQEIDLATGTFATIQTGHR-----KLL--------GKA-----------------NP 983 (1094)
Q Consensus 939 ~~l~~-s~~----~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~-----~~~--------~h~-----------------~~ 983 (1094)
....+ .++ .++.++.+|.++++|..+|+.+....... .+. .+. ..
T Consensus 303 ~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~ 382 (668)
T 1kv9_A 303 TLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHN 382 (668)
T ss_dssp EEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSC
T ss_pred EEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccC
Confidence 11111 133 38889999999999999999873321100 000 000 00
Q ss_pred eEEEEEeCCccEEEEEE------------------------------------CCCCEEEEEECCCCeEEEEecCCCCE-
Q 001349 984 VHALQVHNGLVYTASTS------------------------------------LDGAAVKMWSTSNYNMVGSLPTLSEV- 1026 (1094)
Q Consensus 984 V~sl~fs~~~~~las~s------------------------------------~Dg~~I~iwd~~~~~~~~~~~~~~~v- 1026 (1094)
-..++++|+...+.... .+ +.|..||..+++.+.++......
T Consensus 383 w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~-g~l~A~D~~tG~~~W~~~~~~~~~ 461 (668)
T 1kv9_A 383 WHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVS-GALLAWDPVKQKAAWKVPYPTHWN 461 (668)
T ss_dssp SSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCE-EEEEEEETTTTEEEEEEEESSSCC
T ss_pred CCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCcc-ceEEEEeCCCCcEEEEccCCCCCc
Confidence 11256666543332210 12 38999999999999888744333
Q ss_pred -EEEEEeCCEEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCC-EEEEEe
Q 001349 1027 -RAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEE-FLVIGT 1083 (1094)
Q Consensus 1027 -~~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~-~L~sgs 1083 (1094)
..+....+.+++|+.||.+++||..+|+.+..+..+....-.-+.+..+|+ ++++++
T Consensus 462 ~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 462 GGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp CCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred CceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence 245556678999999999999999999999988644321223344556776 444443
No 333
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.46 E-value=1.8e-06 Score=104.94 Aligned_cols=286 Identities=10% Similarity=0.059 Sum_probs=191.9
Q ss_pred chhHHHhhhHhhhccCCchHHHHHHHHHHHhhccccc-------------------------------------c-hhhh
Q 001349 310 SKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDK-------------------------------------S-VIHT 351 (1094)
Q Consensus 310 ~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~-------------------------------------~-~~~~ 351 (1094)
..+.++..+++++-.+.+..+.-.+..+|.|+....+ . +++.
T Consensus 373 ~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~ 452 (778)
T 3opb_A 373 SNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKY 452 (778)
T ss_dssp HCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHH
Confidence 3444566677777655566777777888887764211 0 3444
Q ss_pred hccCCCcHHHHHHHHhcC----hHHHHHHHHhcCCChHHHHHh---hhhHHHHHHHHhccccccccccCchhhHHHHHHH
Q 001349 352 LTRVESDVERIVALFKKG----LLEAVVLIDLLRPSTRTLIEM---DMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQ 424 (1094)
Q Consensus 352 i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~~~~~~~~---~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~ 424 (1094)
+. ..|.++.|+.+++++ ...|+.+|++|+..++++..+ |.+++|+++|.++.+..- .-+..|...|..
T Consensus 453 l~-eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~----~~k~~AA~ALAr 527 (778)
T 3opb_A 453 IL-RTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGE----PIRILGCRALTR 527 (778)
T ss_dssp TT-TTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CC----HHHHHHHHHHHH
T ss_pred HH-HCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcch----HHHHHHHHHHHH
Confidence 44 457999999999987 567888999998777766444 455999999999853310 114445555666
Q ss_pred HhcCCcccccccchhh-hccchhHHHHHHhhhc--cc------------HHHHHHHHHHHHHHhhccC----cchhhHhh
Q 001349 425 MIGDSEESIVSSIANT-IVSSKVFESVISSLEA--EW------------AEERIAAVGILLRCMQEDG----KCRNSIAD 485 (1094)
Q Consensus 425 l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~--~~------------~~~~~~~~~~l~~~~~~~~----~~r~~~~~ 485 (1094)
|+-.. |+..... -...|+|++|++.|.. +. ..++..|+..|.+....++ ..|..|..
T Consensus 528 Llis~----np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~ 603 (778)
T 3opb_A 528 MLIFT----NPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVS 603 (778)
T ss_dssp HHHTS----CHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred HHhcC----CHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHH
Confidence 64322 2222211 0124999999999983 21 1346667777776666542 34565666
Q ss_pred -hcCchhHHHHHHhcCCchhHHHHHHHHHHHhccccchhHHHHHHhh-hcC--cchhHHHHHHHHhhcCCccchhHHHHH
Q 001349 486 -KAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIK-DEG--TYSSMHTLLVYLQTANHDQCPVVAGLL 561 (1094)
Q Consensus 486 -~~~~~~~~~l~~~~~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~-~~~--~~~~~~~~~~~l~~~~~~~~~~~a~~l 561 (1094)
.+.++.+.+|+.+.+...|.+|.+.+..|..-+-. +.+.+- .++ +..-+|+|+.+++....+.|-.||+.|
T Consensus 604 ~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~-----i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagAL 678 (778)
T 3opb_A 604 TKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLT-----IAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIF 678 (778)
T ss_dssp SHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGG-----TGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHH-----HHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHH
Confidence 48999999999998888899999999999874311 001111 111 222489999999999999999999999
Q ss_pred HhhhcccCCC-CCCccHHHHHHHHHHHhhcC-CChHHHHHHHHHHHhccc
Q 001349 562 LQLDLLAEPR-KMSIYREEAIDTLISCLRNS-DYPAAQLAAAKTIVSLQG 609 (1094)
Q Consensus 562 ~~l~~~~~~~-~~~~~reea~~~~~~~l~~~-~~~~~~~~~~~~~~~l~g 609 (1094)
..|-.-.+.- +..+-++++++.++..+... +...+|.-++.++.|+..
T Consensus 679 AnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 679 ANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 9985433332 33333458999999999986 566788889999998875
No 334
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.43 E-value=6.5e-06 Score=93.15 Aligned_cols=210 Identities=11% Similarity=0.034 Sum_probs=127.2
Q ss_pred eeEEEecccCCCeEEEEEecCCCEEEEEeC--CCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEE
Q 001349 846 HLIQQIREHTKAVTGLAILQSGEMLYSGSL--DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVH 923 (1094)
Q Consensus 846 ~~~~~l~~H~~~V~sv~fspdg~~LaSgs~--DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~ 923 (1094)
+.+..+. ..+..|+++++|+++++... ++.++||.+.+++.. ...... .++.
T Consensus 10 ~~v~~~~---~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~---~~p~~~---------------~~~~----- 63 (343)
T 2qe8_A 10 EVVAELS---LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI---PFPPQS---------------GNAI----- 63 (343)
T ss_dssp EEEEEES---SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE---ESCCCC---------------SSCC-----
T ss_pred EEEEEcC---CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee---cCCCcc---------------cCcc-----
Confidence 4444443 67899999999999988642 343666666544321 110000 0000
Q ss_pred EeCCeEEEEcCCCCceEEEEeC-CEEEEEEc------CCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCC-ccE
Q 001349 924 LRNGKTKLLNSSKYPKCLALVQ-GKVYCGCQ------DGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG-LVY 995 (1094)
Q Consensus 924 ~~~g~i~l~~~~~~v~~l~~s~-~~l~sgs~------Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~-~~~ 995 (1094)
.+-..+.++++++ +.|++... ++.|.+||+.+++....+........+...+..++++++ +..
T Consensus 64 ---------~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~ 134 (343)
T 2qe8_A 64 ---------ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFV 134 (343)
T ss_dssp ---------CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEE
T ss_pred ---------cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEE
Confidence 0112345555553 45555443 478999999998866443321111223345789999964 555
Q ss_pred EEEEE---CCCCEEEEEECCCCeEEEEecC------------------------------CCCEEEEEEeCC--EEEEEE
Q 001349 996 TASTS---LDGAAVKMWSTSNYNMVGSLPT------------------------------LSEVRAMVVSSE--LVYLGC 1040 (1094)
Q Consensus 996 las~s---~Dg~~I~iwd~~~~~~~~~~~~------------------------------~~~v~~l~~spd--~l~sgs 1040 (1094)
.++.. .+ +.|.+||..+++..+.+.. ...+..++++|| .++.+.
T Consensus 135 yvtd~~~~~~-~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~ 213 (343)
T 2qe8_A 135 YISDPAPDDK-AALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSP 213 (343)
T ss_dssp EEEECCSGGG-CEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEE
T ss_pred EEEcCccCCC-CeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEe
Confidence 45544 34 4899999988876665432 023678999998 677776
Q ss_pred cCC-eEEEEECC---CCc--------EEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1041 KGG-TVEIWDQK---RQI--------RIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1041 ~dg-~I~vwd~~---t~~--------~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
.++ .++.++.. .+. .+..+ ++.+....++++++|.++++...++.|.+||.
T Consensus 214 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~ 276 (343)
T 2qe8_A 214 MHSTSMYRIKSADLSNLQLTDAELGSKIERY--SEKPICDGISIDKDHNIYVGDLAHSAIGVITS 276 (343)
T ss_dssp SSCSEEEEEEHHHHTCTTCCHHHHHTTCEEE--EECCSCSCEEECTTCCEEEEEGGGTEEEEEET
T ss_pred CCCCeEEEEEHHHhcCCCCChhhhhcceEec--ccCCCCceEEECCCCCEEEEccCCCeEEEEEC
Confidence 655 55555532 110 01111 33445678999999999999989999999985
No 335
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=98.43 E-value=1.1e-07 Score=100.73 Aligned_cols=197 Identities=13% Similarity=0.119 Sum_probs=134.9
Q ss_pred hHHHHHHHHhcccc-ccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHH
Q 001349 393 MESLMTVIKKKEED-FLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLR 471 (1094)
Q Consensus 393 ~~~Ll~~l~~~~~~-~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~ 471 (1094)
+|+||..|.+++.. .. +..|...+..| ...+..++..|.+.|+||.||+.|+.++.+-+..|+..|.+
T Consensus 10 i~~lV~lL~s~~~~~~~------q~~Aa~~l~~L-----~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~n 78 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSR------ISAAATFIQHE-----CFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRN 78 (233)
T ss_dssp HHHHHHTCCSSCCCHHH------HHHHHHHHHHH-----HHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCchHHH------HHHHHHHHHHH-----HcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 37888888776531 11 22233334444 12346789999999999999999999999999999999987
Q ss_pred HhhccCcchhhHhhhcCchhHHHHHHh-cCCchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHH---h
Q 001349 472 CMQEDGKCRNSIADKAELAPVMESFMA-ASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYL---Q 547 (1094)
Q Consensus 472 ~~~~~~~~r~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l---~ 547 (1094)
+...+..+|..|.+.+++++|++||++ ++...+.+|..+|.+|.....-. ..|-+++ +.. |+..+ .
T Consensus 79 La~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k------~~i~~~~-i~~---Lv~ll~~p~ 148 (233)
T 3tt9_A 79 LVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK------NLMITEA-LLT---LTENIIIPF 148 (233)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGH------HHHHHHH-HHH---HCCCCCHHH
T ss_pred HHhCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhH------HHHHhcc-HHH---HHHHHhccc
Confidence 766677899999999999999999985 67788889999999997653211 1222332 222 22211 1
Q ss_pred hcCCc---c----------chhHHHHHHhhhccc-CCCCCCccHHHHHHHHHHHhhcC----C-ChHHHHHHHHHHHhcc
Q 001349 548 TANHD---Q----------CPVVAGLLLQLDLLA-EPRKMSIYREEAIDTLISCLRNS----D-YPAAQLAAAKTIVSLQ 608 (1094)
Q Consensus 548 ~~~~~---~----------~~~~a~~l~~l~~~~-~~~~~~~~reea~~~~~~~l~~~----~-~~~~~~~~~~~~~~l~ 608 (1094)
++..+ + +.=+|+.|-.|..-. |-|+...-.++.|+.|+..|+.. . .++.|+-|..+|-||.
T Consensus 149 sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs 228 (233)
T 3tt9_A 149 SGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLS 228 (233)
T ss_dssp HCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred cCCcccccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHH
Confidence 12111 1 123788888887743 33443332346899999988763 3 4478999999999987
Q ss_pred cc
Q 001349 609 GR 610 (1094)
Q Consensus 609 g~ 610 (1094)
-+
T Consensus 229 ~~ 230 (233)
T 3tt9_A 229 YQ 230 (233)
T ss_dssp CC
T ss_pred hh
Confidence 54
No 336
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.43 E-value=1.2e-07 Score=87.04 Aligned_cols=46 Identities=15% Similarity=0.341 Sum_probs=40.0
Q ss_pred ceeccCccccccCc------------------EEcCCcccccHHhHHHHHHhCCCCCCCCCcCCC
Q 001349 163 DFVCPITTHIFDDP------------------VTLETGQTYERRAIQEWIERGNSSCPITRQKLS 209 (1094)
Q Consensus 163 ~~~CpIc~~~~~dP------------------v~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~ 209 (1094)
+-.|+||++.|.++ +.++|||.|+..||..|+.. +.+||+||+.+.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence 56799999999987 34799999999999999987 668999999764
No 337
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.40 E-value=4.7e-08 Score=84.85 Aligned_cols=43 Identities=16% Similarity=0.336 Sum_probs=38.8
Q ss_pred ceeccCccccccCcEEcCCccc-ccHHhHHHHHHhCCCCCCCCCcCCCC
Q 001349 163 DFVCPITTHIFDDPVTLETGQT-YERRAIQEWIERGNSSCPITRQKLSS 210 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~~~cGht-fc~~ci~~~~~~~~~~CP~c~~~~~~ 210 (1094)
+..|+||++.+.+||.++|||. ||..|+..| ..||.||+.+..
T Consensus 18 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCPCGHTVCCESCAAQL-----QSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC-----SBCTTTCCBCCE
T ss_pred CCEeEEeCcccCcEEEECCCCHHHHHHHHHhc-----CcCCCCCchhhC
Confidence 6789999999999999999999 999999865 279999998764
No 338
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.39 E-value=0.0017 Score=82.13 Aligned_cols=288 Identities=10% Similarity=0.175 Sum_probs=176.2
Q ss_pred EEEEeeCCCCeEEEeCCcc--eee-cccCCCcEEEEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEecc-------cC
Q 001349 787 KVLSNGHDSSADFWNHREL--VHV-DSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIRE-------HT 855 (1094)
Q Consensus 787 ~l~s~s~dg~I~vWd~~~~--~~~-~~~h~~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~-------H~ 855 (1094)
.+..+..++-+..|+.... ... ...+...|.++...++ .+..|+.++-+..||..++. ....... ..
T Consensus 185 ~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~--~~~~~~~~~~~~~l~~ 262 (795)
T 4a2l_A 185 QIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKE--IKNYLHSPSNPKSISS 262 (795)
T ss_dssp EEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTE--EEEECCCTTCTTSCSC
T ss_pred CEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCe--EEEeecCCCCccccCC
Confidence 4444666555778886522 111 1123567888888765 77777766568999988873 2222111 13
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecc------cCccceeeeecCceEEEeeCCCeEEEEEeCCeE
Q 001349 856 KAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHD------IKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKT 929 (1094)
Q Consensus 856 ~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~------~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i 929 (1094)
..|.++...++|.+.+ |+.+| |.+||..++......... ....|.++. ..++|. +-+++.++.+
T Consensus 263 ~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~-------~D~~g~-lWigt~~~Gl 332 (795)
T 4a2l_A 263 NYIRSLAMDSQNRLWI-GTFND-LNIYHEGTDSFASYSSNPVENGSLSQRSVRSIF-------MDSQGG-MWLGTYFGGL 332 (795)
T ss_dssp SBEEEEEECTTSCEEE-EESSC-EEEEETTTTEEEEECCCTTSTTSCSSSCEEEEE-------ECTTSC-EEEEESSSCE
T ss_pred CeEEEEEEcCCCCEEE-EeCCh-hheEcCCCCeEEEEecCCCCCCCCCCCcEEEEE-------EeCCcC-EEEEECCCCe
Confidence 5699999988887655 44554 899998887544332211 123455554 445554 3344444444
Q ss_pred EEEcC------------------CCCceEEEEe-CCEEEEEEcCCeEEEEECCCCceeEEeccceee--cCCCCCeEEEE
Q 001349 930 KLLNS------------------SKYPKCLALV-QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKL--LGKANPVHALQ 988 (1094)
Q Consensus 930 ~l~~~------------------~~~v~~l~~s-~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~--~~h~~~V~sl~ 988 (1094)
..++. ...|.++... ++.+.+|+.++.|..||..++............ .-....|.++.
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~ 412 (795)
T 4a2l_A 333 NYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVY 412 (795)
T ss_dssp EEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEE
T ss_pred EEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEE
Confidence 43331 2347777776 477999999989999999887654322110000 01235799999
Q ss_pred EeCCcc-EEEEEECCCCEEEEEECCCCeEEEEec-----CCCCEEEEEEeCC-EEEEEEcCCeEEEEECCCCcEEEEecc
Q 001349 989 VHNGLV-YTASTSLDGAAVKMWSTSNYNMVGSLP-----TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQT 1061 (1094)
Q Consensus 989 fs~~~~-~las~s~Dg~~I~iwd~~~~~~~~~~~-----~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~~~~~l~~ 1061 (1094)
.++++. +.+ ++.++ -|..||..+++...... ....|.++..+++ .++.|+. +.+.+||..+++... +..
T Consensus 413 ~d~~g~~lWi-gt~~~-Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~-~~~ 488 (795)
T 4a2l_A 413 VDEKKSLVYI-GTHAG-GLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTT-IEK 488 (795)
T ss_dssp EETTTTEEEE-EETTT-EEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEE-CCB
T ss_pred EcCCCCEEEE-EeCcC-ceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEE-ccc
Confidence 988876 433 33443 69999998876543321 2456889988876 6777877 458999988775433 311
Q ss_pred c------CCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1062 G------TSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1062 ~------h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
. +...|.++...++|.+.+.. .+| |..||
T Consensus 489 ~~~~~~~~~~~i~~i~~d~~g~lWigt-~~G-l~~~~ 523 (795)
T 4a2l_A 489 EKDGTPVVSKQITTLFRDSHKRLWIGG-EEG-LSVFK 523 (795)
T ss_dssp CTTCCBCCCCCEEEEEECTTCCEEEEE-SSC-EEEEE
T ss_pred cccccccCCceEEEEEECCCCCEEEEe-CCc-eEEEe
Confidence 1 23579999999988866544 444 66665
No 339
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.38 E-value=3.7e-07 Score=76.63 Aligned_cols=44 Identities=18% Similarity=0.205 Sum_probs=39.3
Q ss_pred CceeccCccccccCcEEcCCccc-ccHHhHHHHHHhCCCCCCCCCcCCCC
Q 001349 162 KDFVCPITTHIFDDPVTLETGQT-YERRAIQEWIERGNSSCPITRQKLSS 210 (1094)
Q Consensus 162 ~~~~CpIc~~~~~dPv~~~cGht-fc~~ci~~~~~~~~~~CP~c~~~~~~ 210 (1094)
++..|+||++...++|.++|||. ||..|+.. ...||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 14 NSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 47889999999999999999999 99999984 3579999998765
No 340
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.37 E-value=6.8e-05 Score=80.91 Aligned_cols=201 Identities=11% Similarity=0.076 Sum_probs=127.8
Q ss_pred eeEEEecccCC--CeEEEEEecCCCEEEEEeC--CCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEE
Q 001349 846 HLIQQIREHTK--AVTGLAILQSGEMLYSGSL--DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIK 921 (1094)
Q Consensus 846 ~~~~~l~~H~~--~V~sv~fspdg~~LaSgs~--DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~ 921 (1094)
+.+.++ .|.. ....+.|++|+.+.++.+. +++|+++|..+++....... .....
T Consensus 10 ~vv~~~-p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l--~~~~f------------------- 67 (266)
T 2iwa_A 10 EVLNEF-PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKM--DDSYF------------------- 67 (266)
T ss_dssp EEEEEE-ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEEC--CTTCC-------------------
T ss_pred eEEEEE-ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEec--CCCcc-------------------
Confidence 455666 3554 3579999998755555543 57999999999863322111 11101
Q ss_pred EEEeCCeEEEEcCCCCceEEEEeCCEEEEEE-cCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEE
Q 001349 922 VHLRNGKTKLLNSSKYPKCLALVQGKVYCGC-QDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTS 1000 (1094)
Q Consensus 922 ~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs-~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s 1000 (1094)
...+++.++.++.+. .++.+.++|..+.+.+..+... .++ . ..++. ++..+..+.
T Consensus 68 ----------------geGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g---~~~--g-~glt~--Dg~~l~vs~ 123 (266)
T 2iwa_A 68 ----------------GEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ---MKD--G-WGLAT--DGKILYGSD 123 (266)
T ss_dssp ----------------EEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECC---SSS--C-CEEEE--CSSSEEEEC
T ss_pred ----------------eEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECC---CCC--e-EEEEE--CCCEEEEEC
Confidence 011222333444443 5689999999999887544311 111 1 22443 433333333
Q ss_pred CCCCEEEEEECCCCeEEEEecCC------CCEEEEEEeCCEEEEEE-cCCeEEEEECCCCcEEEEecccC----------
Q 001349 1001 LDGAAVKMWSTSNYNMVGSLPTL------SEVRAMVVSSELVYLGC-KGGTVEIWDQKRQIRIETLQTGT---------- 1063 (1094)
Q Consensus 1001 ~Dg~~I~iwd~~~~~~~~~~~~~------~~v~~l~~spd~l~sgs-~dg~I~vwd~~t~~~~~~l~~~h---------- 1063 (1094)
.+ +.|.++|..+.+.+.++.-. ..++.+.|....+++.. .++.|.+.|..+++.+..+..+.
T Consensus 124 gs-~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~ 202 (266)
T 2iwa_A 124 GT-SILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGF 202 (266)
T ss_dssp SS-SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTC
T ss_pred CC-CeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccc
Confidence 44 49999999999988888722 24678888855666666 47899999999999999985321
Q ss_pred --CcceEEEEEcCCCCEE-EEEeCCCcEEEEeC
Q 001349 1064 --SGKVQCMALDDNEEFL-VIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1064 --~~~I~~l~~Spdg~~L-~sgs~DG~I~iWdl 1093 (1094)
....+.++|+|+++.+ +++...+++.+.++
T Consensus 203 ~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l 235 (266)
T 2iwa_A 203 RDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKL 235 (266)
T ss_dssp TTCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred cccCceEEEEEcCCCCEEEEECCCCCeEEEEEE
Confidence 1256899999998755 55556777777654
No 341
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.37 E-value=2.2e-07 Score=106.59 Aligned_cols=180 Identities=13% Similarity=0.063 Sum_probs=92.6
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC
Q 001349 866 SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ 945 (1094)
Q Consensus 866 dg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~ 945 (1094)
++..+++++.||.|+.||..+|+..-.... ..+.+.. +..++.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~---~~~~s~p-------~~~~g~--------------------------- 50 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE---DPVLQVP-------THVEEP--------------------------- 50 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC---CCSCCCC------------C---------------------------
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC---CCceecc-------eEcCCC---------------------------
Confidence 678999999999999999999863322211 2222221 222222
Q ss_pred CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCCC
Q 001349 946 GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSE 1025 (1094)
Q Consensus 946 ~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~ 1025 (1094)
.+++++.||.|+.||..+|+..........-.....++. ..++ .++.++.++ .|..||..+|+.+..+.....
T Consensus 51 -~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~----~~~~-~v~~g~~dg-~v~a~D~~tG~~~w~~~~~~~ 123 (369)
T 2hz6_A 51 -AFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCR----SSDG-ILYMGKKQD-IWYVIDLLTGEKQQTLSSAFA 123 (369)
T ss_dssp -CEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC----------CCCCEEEE-EEEEECCC-------------
T ss_pred -EEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceE----ecCC-EEEEEeCCC-EEEEEECCCCcEEEEecCCCc
Confidence 255567899999999998887543321100000111211 1222 334445565 899999999999888774432
Q ss_pred EEEEEEeCCEEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCC---CEEEEEeCCCcEEEEeC
Q 001349 1026 VRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNE---EFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1026 v~~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg---~~L~sgs~DG~I~iWdl 1093 (1094)
+. .+-..+.+++++.|+.|+.||..+|+.+..+.. + .....+++.+. ..+++++.||.|+.||.
T Consensus 124 ~~-~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~--~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~ 190 (369)
T 2hz6_A 124 DS-LSPSTSLLYLGRTEYTITMYDTKTRELRWNATY-F--DYAASLPEDDVDYKMSHFVSNGDGLVVTVDS 190 (369)
T ss_dssp ----------EEEEEEEEEEECCCSSSSSCCCEEEE-E--EECCBCCCCCTTCCCCEEEEETSCEEEEECT
T ss_pred cc-ccccCCEEEEEecCCEEEEEECCCCCEEEeEec-c--cccCccccCCccccceEEEECCCCEEEEEEC
Confidence 21 111334888999999999999999987766631 1 12233344432 56777889999999986
No 342
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.36 E-value=5.3e-05 Score=91.85 Aligned_cols=78 Identities=9% Similarity=0.046 Sum_probs=56.2
Q ss_pred CEEEEEECCCCeEEEEecCCCCEEE--EEEeCCEEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEE
Q 001349 1004 AAVKMWSTSNYNMVGSLPTLSEVRA--MVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVI 1081 (1094)
Q Consensus 1004 ~~I~iwd~~~~~~~~~~~~~~~v~~--l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~s 1081 (1094)
+.|..||..+++.+.++.....+.+ +....+.+++++.||.|+.||..+|+.+..+..++...-.-+.+..+|+.++.
T Consensus 444 g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence 4899999999999888874433322 33345688889999999999999999999986554322233446677875543
No 343
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.32 E-value=3.4e-06 Score=100.12 Aligned_cols=236 Identities=11% Similarity=0.062 Sum_probs=151.5
Q ss_pred EEEE-EECCCeEEEEecCCCcceeEEEec-ccCCCeEEEEE-e-cCCCEEEEEe------------------CCCcEEEE
Q 001349 825 KIFS-GHSDGTIKVWTGRGSILHLIQQIR-EHTKAVTGLAI-L-QSGEMLYSGS------------------LDKTARVW 882 (1094)
Q Consensus 825 ~LaS-gs~Dg~I~vWd~~t~~~~~~~~l~-~H~~~V~sv~f-s-pdg~~LaSgs------------------~DgtI~vW 882 (1094)
+++. ...++.|.+.|+.+. ++...+. ........+++ + |++.+++.++ .++.+.++
T Consensus 103 ~lfVnd~~~~rVavIdl~t~--~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvI 180 (595)
T 1fwx_A 103 FLFMNDKANTRVARVRCDVM--KCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAV 180 (595)
T ss_dssp EEEEEETTTTEEEEEETTTT--EEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCc--eEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEE
Confidence 4444 445677999999998 5555332 12345788888 5 8999999885 24678999
Q ss_pred ECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCe---------------EEEEcCCCCceEEEEeCCE
Q 001349 883 SIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGK---------------TKLLNSSKYPKCLALVQGK 947 (1094)
Q Consensus 883 di~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~---------------i~l~~~~~~v~~l~~s~~~ 947 (1094)
|..+.+. ......... +..+.++|+|+++.+.+.+.. +.+++...... ....|.
T Consensus 181 D~~t~~v--~~qI~Vgg~-------pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~--~v~~Gk 249 (595)
T 1fwx_A 181 DADKWEV--AWQVLVSGN-------LDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK--AIAAGD 249 (595)
T ss_dssp ETTTTEE--EEEEEESSC-------CCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH--HHHHTC
T ss_pred ECCCCeE--EEEEEeCCC-------ccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeE--eccCCC
Confidence 9998642 222211112 233449999999999887742 22222100000 000121
Q ss_pred -EEEEEcCCeEEEEECCC--Cce-eEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCe--------
Q 001349 948 -VYCGCQDGAIQEIDLAT--GTF-ATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN-------- 1015 (1094)
Q Consensus 948 -l~sgs~Dg~I~iwDl~~--~~~-~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~-------- 1015 (1094)
... +.|.+.|.++ ++. +..... .....++.++||+.+++.++....+|.++|+.+.+
T Consensus 250 ~~~i----~~V~VID~~~~~~~~~~~~Ipv-------g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~ 318 (595)
T 1fwx_A 250 YQEL----NGVKVVDGRKEASSLFTRYIPI-------ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENAD 318 (595)
T ss_dssp SEEE----TTEEEEECSGGGCCSSEEEEEE-------ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCC
T ss_pred eeEE----CcEEEEeCcccCCceeEEEEec-------CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccC
Confidence 222 5599999998 543 222111 13566899999999988887666699999998653
Q ss_pred ----EEEEecCCCCEEEEEEeCC-EEEE-EEcCCeEEEEECCC----------CcEEEEecc----cCCcceEEEEEcCC
Q 001349 1016 ----MVGSLPTLSEVRAMVVSSE-LVYL-GCKGGTVEIWDQKR----------QIRIETLQT----GTSGKVQCMALDDN 1075 (1094)
Q Consensus 1016 ----~~~~~~~~~~v~~l~~spd-~l~s-gs~dg~I~vwd~~t----------~~~~~~l~~----~h~~~I~~l~~Spd 1075 (1094)
......-+.....++|+++ .+++ ..-|+.|.+||+.+ .+.+.++.. +|...-.++.++||
T Consensus 319 ~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~D 398 (595)
T 1fwx_A 319 PRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDAT 398 (595)
T ss_dssp GGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCC
T ss_pred cccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCC
Confidence 4556666788999999998 4444 45689999999877 567777743 22111123356899
Q ss_pred CCEEEEEeC
Q 001349 1076 EEFLVIGTS 1084 (1094)
Q Consensus 1076 g~~L~sgs~ 1084 (1094)
|++|++++.
T Consensus 399 Gk~l~~~Nk 407 (595)
T 1fwx_A 399 NDWLVCLSK 407 (595)
T ss_dssp SSEEEEEES
T ss_pred CCEEEEcCC
Confidence 999998864
No 344
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.31 E-value=1.1e-07 Score=105.96 Aligned_cols=45 Identities=16% Similarity=0.278 Sum_probs=40.6
Q ss_pred CCceeccCccccccCcEEcCCccc-ccHHhHHHHHHhCCCCCCCCCcCCCC
Q 001349 161 PKDFVCPITTHIFDDPVTLETGQT-YERRAIQEWIERGNSSCPITRQKLSS 210 (1094)
Q Consensus 161 ~~~~~CpIc~~~~~dPv~~~cGht-fc~~ci~~~~~~~~~~CP~c~~~~~~ 210 (1094)
.+++.||||++.+.+||+++|||+ ||+.|+..| ..||.||..+..
T Consensus 293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 347999999999999999999999 999999987 479999998764
No 345
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.29 E-value=0.00011 Score=84.38 Aligned_cols=240 Identities=12% Similarity=0.036 Sum_probs=142.5
Q ss_pred EEEEEECCCeEEEEecCCC--cceeEEEec------c-cCCCeEEEEEecCCCEEEEEeCC------CcEEEEECCCCce
Q 001349 825 KIFSGHSDGTIKVWTGRGS--ILHLIQQIR------E-HTKAVTGLAILQSGEMLYSGSLD------KTARVWSIGNEEI 889 (1094)
Q Consensus 825 ~LaSgs~Dg~I~vWd~~t~--~~~~~~~l~------~-H~~~V~sv~fspdg~~LaSgs~D------gtI~vWdi~~~~~ 889 (1094)
++++|-.++.|.|+|+.+. +.+..+++. . ....-..+..+|+| +++++..+ |.|.+.|..+++.
T Consensus 98 l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v 176 (462)
T 2ece_A 98 LIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEP 176 (462)
T ss_dssp EEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCE
T ss_pred EEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeE
Confidence 6777788999999999743 345566662 1 11245667889999 77777666 7899999998763
Q ss_pred EEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeE
Q 001349 890 HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFAT 969 (1094)
Q Consensus 890 ~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~ 969 (1094)
........ .+ ..+ +..+.|+|+++.+++..|..-..+.. .+....+. +-.+.+|.+||+.+++...
T Consensus 177 ~~~~~~~~-~~-~~~---~Yd~~~~p~~~~mvsS~wg~p~~~~~--------g~~~~~~~-~~~~d~V~v~D~~~~k~~~ 242 (462)
T 2ece_A 177 LGKWEIDR-GD-QYL---AYDFWWNLPNEVLVSSEWAVPNTIED--------GLKLEHLK-DRYGNRIHFWDLRKRKRIH 242 (462)
T ss_dssp EEECCSBC-TT-CCC---CCCEEEETTTTEEEECBCCCHHHHTT--------CCCTTTHH-HHSCCEEEEEETTTTEEEE
T ss_pred EEEEccCC-CC-ccc---cceEEECCCCCEEEEccCcCcccccc--------ccchhhhh-hccCCEEEEEECCCCcEee
Confidence 32222111 11 000 11233788888665544320000000 00000000 0346899999999887664
Q ss_pred EeccceeecCCCCCeEEEEE--eCCccEEEEEEC-----CCCEEEEEECCCCeE--EEEe--cC----------------
Q 001349 970 IQTGHRKLLGKANPVHALQV--HNGLVYTASTSL-----DGAAVKMWSTSNYNM--VGSL--PT---------------- 1022 (1094)
Q Consensus 970 ~~~~~~~~~~h~~~V~sl~f--s~~~~~las~s~-----Dg~~I~iwd~~~~~~--~~~~--~~---------------- 1022 (1094)
.+.. .........+.| +|++.+...++. ..++|.+|....+.. .+.+ ..
T Consensus 243 tI~v----g~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~ 318 (462)
T 2ece_A 243 SLTL----GEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKA 318 (462)
T ss_dssp EEES----CTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTE
T ss_pred EEec----CCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccccccccc
Confidence 3221 101123344555 899888777765 545887776654431 1111 10
Q ss_pred -CCCEEEEEEeCC--EEEEEEc-CCeEEEEECC---CCcEEEEecccCC-------------cceEEEEEcCCCCEEEEE
Q 001349 1023 -LSEVRAMVVSSE--LVYLGCK-GGTVEIWDQK---RQIRIETLQTGTS-------------GKVQCMALDDNEEFLVIG 1082 (1094)
Q Consensus 1023 -~~~v~~l~~spd--~l~sgs~-dg~I~vwd~~---t~~~~~~l~~~h~-------------~~I~~l~~Spdg~~L~sg 1082 (1094)
......+.+|+| +++++.. .+.|.+||+. +.+.+..+..+-. +.-..+.++|||++|+++
T Consensus 319 ~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVa 398 (462)
T 2ece_A 319 VPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVT 398 (462)
T ss_dssp ECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEE
T ss_pred CCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEE
Confidence 245678999998 6666654 6899999985 3456666654411 135889999999999998
Q ss_pred e
Q 001349 1083 T 1083 (1094)
Q Consensus 1083 s 1083 (1094)
+
T Consensus 399 N 399 (462)
T 2ece_A 399 N 399 (462)
T ss_dssp C
T ss_pred c
Confidence 8
No 346
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.29 E-value=0.0015 Score=82.48 Aligned_cols=284 Identities=11% Similarity=0.114 Sum_probs=175.7
Q ss_pred EEEEeeCCCCeEEEeCCcc--eeeccc-------CCCcEEEEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEec----
Q 001349 787 KVLSNGHDSSADFWNHREL--VHVDSS-------ENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIR---- 852 (1094)
Q Consensus 787 ~l~s~s~dg~I~vWd~~~~--~~~~~~-------h~~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~---- 852 (1094)
.+..+..++-+..||.... ...... ....|.++...++ .|..|+.+ -|.+||..++. ......
T Consensus 227 ~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~--~~~~~~~~~~ 303 (795)
T 4a2l_A 227 RIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDS--FASYSSNPVE 303 (795)
T ss_dssp EEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTTTE--EEEECCCTTS
T ss_pred CEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCCCe--EEEEecCCCC
Confidence 3444554545778887632 222111 2467999998875 77777776 58899988773 222111
Q ss_pred ---ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecc-----cCccceeeeecCceEEEeeCCCeEEEEE
Q 001349 853 ---EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHD-----IKDQIQNLAVSNSILCFIPQGAGIKVHL 924 (1094)
Q Consensus 853 ---~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~-----~~~~V~~v~~~~~~~~fspdg~~l~~~~ 924 (1094)
-....|.++...++|.+. .|+.++-|..|+..++......... ....|.++. ..++|. +-+++
T Consensus 304 ~~~l~~~~i~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~-------~d~~g~-lWiGt 374 (795)
T 4a2l_A 304 NGSLSQRSVRSIFMDSQGGMW-LGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIV-------EDKDKN-LWIGT 374 (795)
T ss_dssp TTSCSSSCEEEEEECTTSCEE-EEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEE-------ECTTSC-EEEEE
T ss_pred CCCCCCCcEEEEEEeCCcCEE-EEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEE-------ECCCCC-EEEEE
Confidence 123579999999888754 5666677999988765543332211 122355554 333443 33344
Q ss_pred eCCeEEEEcC--------------------CCCceEEEEe-CCE-EEEEEcCCeEEEEECCCCceeEEeccceeecCCCC
Q 001349 925 RNGKTKLLNS--------------------SKYPKCLALV-QGK-VYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKAN 982 (1094)
Q Consensus 925 ~~g~i~l~~~--------------------~~~v~~l~~s-~~~-l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~ 982 (1094)
.++.+..++. ...|.++... ++. +.+|+.++.|..||..+++.......... ....
T Consensus 375 ~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~--l~~~ 452 (795)
T 4a2l_A 375 NDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQ--LVNE 452 (795)
T ss_dssp SSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSC--CSCS
T ss_pred CCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCC--cCCC
Confidence 4433333321 2346777765 567 99999988999999998876532211101 2345
Q ss_pred CeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-------CCCCEEEEEEeCC-EEEEEEcCCeEEEEECCCCc
Q 001349 983 PVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-------TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQI 1054 (1094)
Q Consensus 983 ~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-------~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~ 1054 (1094)
.|.++...+++.+.+++. +| +.+||..+++...... ....|.++..+++ .++.|+. +-|..||..+++
T Consensus 453 ~v~~i~~d~~g~lwigt~-~G--l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~ 528 (795)
T 4a2l_A 453 NVYAILPDGEGNLWLGTL-SA--LVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLD 528 (795)
T ss_dssp CEEEEEECSSSCEEEEES-SC--EEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTE
T ss_pred eeEEEEECCCCCEEEEec-Cc--eeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCe
Confidence 789999888777666553 44 8999988776543221 1356889988877 6777877 568899988776
Q ss_pred EEEEecc------cCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1055 RIETLQT------GTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1055 ~~~~l~~------~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
. .+.. .....|.++..+++|.+.++. .+| |..||
T Consensus 529 ~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~G-l~~~d 568 (795)
T 4a2l_A 529 I--QKASILPVSNVTKLFTNCIYEASNGIIWVGT-REG-FYCFN 568 (795)
T ss_dssp E--EECCCSCSCGGGGSCEEEEEECTTSCEEEEE-SSC-EEEEE
T ss_pred E--EEecCCCCCCCCCCeeEEEEECCCCCEEEEe-CCC-ceeEC
Confidence 5 3321 133479999999998865544 344 66665
No 347
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.25 E-value=0.00027 Score=78.85 Aligned_cols=253 Identities=7% Similarity=-0.031 Sum_probs=137.1
Q ss_pred cEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEec-----------------ccCCCeEEEEEec-CCCEEEEEe
Q 001349 815 KVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIR-----------------EHTKAVTGLAILQ-SGEMLYSGS 874 (1094)
Q Consensus 815 ~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~-----------------~H~~~V~sv~fsp-dg~~LaSgs 874 (1094)
...+++|.++ +++++..++.|..||..++......... .....+..+++.+ +|+ |+.+.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d 98 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVD 98 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEE
Confidence 3456778775 5888889999999998876322221100 0123578999998 555 55554
Q ss_pred CCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEee-CCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEc
Q 001349 875 LDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIP-QGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQ 953 (1094)
Q Consensus 875 ~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fsp-dg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~ 953 (1094)
..+.|..+|..++....+.......+. ..+..+++.+ +|+..+...... +...... ..++.+..
T Consensus 99 ~~~~i~~~d~~~g~~~~~~~~~~~~~~----~~p~~i~~d~~~G~l~v~d~~~~----~~~~~~~-------~~~~~~~~ 163 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHATQLATSVDGVPF----KWLYAVTVDQRTGIVYFTDVSTL----YDDRGVQ-------QIMDTSDK 163 (322)
T ss_dssp TTTEEEEECTTCEECEEEESEETTEEC----SCEEEEEECTTTCCEEEEESCSS----CCTTCHH-------HHHHHTCC
T ss_pred CCCCEEEEeCCCCEEEEecccCCCCcc----cccceEEEecCCCEEEEECCccc----ccccccc-------eehcccCC
Confidence 445588888876543332211100000 0122334666 665322211100 0000000 00000122
Q ss_pred CCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCe--EEEEe-cCCCCEEEEE
Q 001349 954 DGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN--MVGSL-PTLSEVRAMV 1030 (1094)
Q Consensus 954 Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~--~~~~~-~~~~~v~~l~ 1030 (1094)
++.|..||..+++...... . ....+.+++++++.++..+....+.|..|++.... ....+ ...+ ...++
T Consensus 164 ~g~v~~~d~~~~~~~~~~~---~----~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~ 235 (322)
T 2fp8_A 164 TGRLIKYDPSTKETTLLLK---E----LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIK 235 (322)
T ss_dssp CEEEEEEETTTTEEEEEEE---E----ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEE
T ss_pred CceEEEEeCCCCEEEEecc---C----CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeE
Confidence 4678888887765432211 1 12345789999987544443333489999987421 11111 1223 78899
Q ss_pred EeCC-EEEEEEc-----------CCeEEEEECCCCcEEEEecccC---CcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1031 VSSE-LVYLGCK-----------GGTVEIWDQKRQIRIETLQTGT---SGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1031 ~spd-~l~sgs~-----------dg~I~vwd~~t~~~~~~l~~~h---~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
++++ .++++.. .+.|..+|.. ++.+..+.... ...++++++ .++.+.++...++.|..+++
T Consensus 236 ~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~ 311 (322)
T 2fp8_A 236 RNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVY 311 (322)
T ss_dssp ECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC
T ss_pred ECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEec
Confidence 9987 3444432 4678889874 77777664222 235777777 46666666667888988876
No 348
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.25 E-value=0.00019 Score=76.63 Aligned_cols=190 Identities=9% Similarity=0.068 Sum_probs=123.4
Q ss_pred eeEEEecccCCC--eEEEEEecCCCEEEEEeCCC--cEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEE
Q 001349 846 HLIQQIREHTKA--VTGLAILQSGEMLYSGSLDK--TARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIK 921 (1094)
Q Consensus 846 ~~~~~l~~H~~~--V~sv~fspdg~~LaSgs~Dg--tI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~ 921 (1094)
+.+.++ .|... ...+.|+ ++.+..+++.+| .|+++|+.+++...... .......
T Consensus 32 ~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~--l~~~~Fg------------------ 89 (262)
T 3nol_A 32 QIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIE--LGKRYFG------------------ 89 (262)
T ss_dssp EEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEE--CCTTCCE------------------
T ss_pred EEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEe--cCCccce------------------
Confidence 455566 45544 4788998 777777888776 89999999986332221 1111111
Q ss_pred EEEeCCeEEEEcCCCCceEEEEeCCEEEEEE-cCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEE
Q 001349 922 VHLRNGKTKLLNSSKYPKCLALVQGKVYCGC-QDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTS 1000 (1094)
Q Consensus 922 ~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs-~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s 1000 (1094)
-.+++.+++++... .++.+.+||..+.+.+..+... ++. ..+++. +..++++ .
T Consensus 90 -----------------eGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~----~eG---~glt~d-g~~L~~S-d 143 (262)
T 3nol_A 90 -----------------EGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYD----GEG---WGLTHN-DQYLIMS-D 143 (262)
T ss_dssp -----------------EEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECS----SCC---CCEEEC-SSCEEEC-C
T ss_pred -----------------eEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECC----CCc---eEEecC-CCEEEEE-C
Confidence 11222233444443 4789999999999988654421 211 233333 2333333 3
Q ss_pred CCCCEEEEEECCCCeEEEEecC---C---CCEEEEEEeCCEEEEEE-cCCeEEEEECCCCcEEEEecccC----------
Q 001349 1001 LDGAAVKMWSTSNYNMVGSLPT---L---SEVRAMVVSSELVYLGC-KGGTVEIWDQKRQIRIETLQTGT---------- 1063 (1094)
Q Consensus 1001 ~Dg~~I~iwd~~~~~~~~~~~~---~---~~v~~l~~spd~l~sgs-~dg~I~vwd~~t~~~~~~l~~~h---------- 1063 (1094)
.+ ..|.++|..+.+.+.++.- + ..++.+.+....+++.. .++.|.+.|..+++.+..+....
T Consensus 144 Gs-~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~ 222 (262)
T 3nol_A 144 GT-PVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPS 222 (262)
T ss_dssp SS-SEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCS
T ss_pred CC-CeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccC
Confidence 34 3899999999998888762 2 33556778766777766 57899999999999998885320
Q ss_pred -CcceEEEEEcCCCCEEEEEeC
Q 001349 1064 -SGKVQCMALDDNEEFLVIGTS 1084 (1094)
Q Consensus 1064 -~~~I~~l~~Spdg~~L~sgs~ 1084 (1094)
....+.|||+|+++.|+..+.
T Consensus 223 ~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 223 PIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp SCCCEEEEEEETTTTEEEEEET
T ss_pred cCCceEEEEEcCCCCEEEEECC
Confidence 135689999999888777764
No 349
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.25 E-value=0.00018 Score=87.27 Aligned_cols=135 Identities=16% Similarity=0.032 Sum_probs=85.5
Q ss_pred CeEEEEECCCCceeEEeccce----eecCCCCCeEEEEEeCCc---cEEEEEECCCCEEEEEECCCCeEEEEecCCC---
Q 001349 955 GAIQEIDLATGTFATIQTGHR----KLLGKANPVHALQVHNGL---VYTASTSLDGAAVKMWSTSNYNMVGSLPTLS--- 1024 (1094)
Q Consensus 955 g~I~iwDl~~~~~~~~~~~~~----~~~~h~~~V~sl~fs~~~---~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~--- 1024 (1094)
+.|..+|..+|+.+..++... .+.....++. +....++ ..++.++.+| .+.++|..+|+.+..+....
T Consensus 272 ~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G-~l~~lD~~tG~~~w~~~~~~~~~ 349 (571)
T 2ad6_A 272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNG-ILYTLNRENGNLIVAEKVDPAVN 349 (571)
T ss_dssp TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTS-EEEEEETTTCCEEEEEESSTTCC
T ss_pred EEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCc-EEEEEECCCCCEEeeecccCCcc
Confidence 369999999999876543210 0001122222 2222355 3456666665 99999999999887765211
Q ss_pred -----------CE--------------------------EEEEEeCC--EEEEEE-------------------------
Q 001349 1025 -----------EV--------------------------RAMVVSSE--LVYLGC------------------------- 1040 (1094)
Q Consensus 1025 -----------~v--------------------------~~l~~spd--~l~sgs------------------------- 1040 (1094)
++ ..++++|+ .+++.+
T Consensus 350 w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~ 429 (571)
T 2ad6_A 350 VFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATL 429 (571)
T ss_dssp SEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred ccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccc
Confidence 11 23567776 555543
Q ss_pred ------------cCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1041 ------------KGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1041 ------------~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
.+|.|..||..+++.+.++..+ ..+.+..+...+..++.++.||.|+.||.
T Consensus 430 ~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~--~~~~~~~~~t~gg~v~~g~~dg~l~a~D~ 492 (571)
T 2ad6_A 430 AMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK--FAAWGGTLYTKGGLVWYATLDGYLKALDN 492 (571)
T ss_dssp EEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES--SCCCSBCEEETTTEEEEECTTSEEEEEET
T ss_pred eeccCccccCCCCCCeEEEEECCCCCEEEEecCC--CCccceeEEECCCEEEEEcCCCeEEEEEC
Confidence 3578999999999988887532 23333333445677888999999999985
No 350
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.24 E-value=0.00042 Score=85.66 Aligned_cols=260 Identities=15% Similarity=0.144 Sum_probs=152.7
Q ss_pred eCCEEEEEECCCeEEEEecCCCcceeEEEecccCCC----------e-EEEEEecCCCEEEEEeCCCcEEEEECCCCceE
Q 001349 822 FRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKA----------V-TGLAILQSGEMLYSGSLDKTARVWSIGNEEIH 890 (1094)
Q Consensus 822 spd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~----------V-~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~ 890 (1094)
..+.++.++.++.|.-+|..+| +.+..+...... + ..+++ ++..++.++.|+.|..+|..+|+..
T Consensus 65 ~~g~vyv~~~~~~v~AlD~~tG--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~ 140 (668)
T 1kv9_A 65 HDGVIYTSMSWSRVIAVDAASG--KELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAI 140 (668)
T ss_dssp ETTEEEEEEGGGEEEEEETTTC--CEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEE
T ss_pred ECCEEEEECCCCeEEEEECCCC--hhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEe
Confidence 4568888999999999999999 677776533211 1 11223 3567888999999999999999743
Q ss_pred EEEecccC---cccee-eeecCceEEEee-------CCCeEEEEEeCCeEEEEcCC----C-------------------
Q 001349 891 CVQVHDIK---DQIQN-LAVSNSILCFIP-------QGAGIKVHLRNGKTKLLNSS----K------------------- 936 (1094)
Q Consensus 891 ~~~~~~~~---~~V~~-v~~~~~~~~fsp-------dg~~l~~~~~~g~i~l~~~~----~------------------- 936 (1094)
-....... ..+.+ ..+....+.+.. +|...+.-..+|.+ +|... .
T Consensus 141 W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~-~W~~~~~~~~p~~~~~~~~~~~~~~~~~g 219 (668)
T 1kv9_A 141 WSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKL-AWRFYTVPGDPALPYEHPELREAAKTWQG 219 (668)
T ss_dssp EEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCE-EEEEESSCCCTTSCCSSHHHHHHHTTCCS
T ss_pred eeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcE-EEEecccCCCCCccccccccccccccCCc
Confidence 22222110 01110 001111121211 12222222222332 22110 0
Q ss_pred -----------CceEEEEe--CCEEEEEEcCC-------------------eEEEEECCCCceeEEeccceeecCCC---
Q 001349 937 -----------YPKCLALV--QGKVYCGCQDG-------------------AIQEIDLATGTFATIQTGHRKLLGKA--- 981 (1094)
Q Consensus 937 -----------~v~~l~~s--~~~l~sgs~Dg-------------------~I~iwDl~~~~~~~~~~~~~~~~~h~--- 981 (1094)
....++++ .+.+++++.++ .|..+|..+|+....+... .|.
T Consensus 220 ~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~----~~~~wd 295 (668)
T 1kv9_A 220 DQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVT----PGDSWD 295 (668)
T ss_dssp SCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESS----TTCCSC
T ss_pred cceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecC----CCcccc
Confidence 00124554 36788888776 3999999999988654321 121
Q ss_pred ----CCeEEEEEeCCcc---EEEEEECCCCEEEEEECCCCeEEEEecCCC--C---------------------------
Q 001349 982 ----NPVHALQVHNGLV---YTASTSLDGAAVKMWSTSNYNMVGSLPTLS--E--------------------------- 1025 (1094)
Q Consensus 982 ----~~V~sl~fs~~~~---~las~s~Dg~~I~iwd~~~~~~~~~~~~~~--~--------------------------- 1025 (1094)
.+.....+..++. +++.++.+| .+.++|..+|+.+..+.... .
T Consensus 296 ~~~~~~~~~~d~~~~G~~~~~v~~~~~~G-~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~ 374 (668)
T 1kv9_A 296 FTATQQITLAELNIDGKPRKVLMQAPKNG-FFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMW 374 (668)
T ss_dssp CCCCSCEEEEEEEETTEEEEEEEECCTTS-EEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEES
T ss_pred ccCCCCcEEEEeccCCcEEEEEEEECCCC-EEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEEC
Confidence 2333333333443 567777776 99999999999885443110 0
Q ss_pred --------EEEEEEeCC--EEEEEE------------------------------------cCCeEEEEECCCCcEEEEe
Q 001349 1026 --------VRAMVVSSE--LVYLGC------------------------------------KGGTVEIWDQKRQIRIETL 1059 (1094)
Q Consensus 1026 --------v~~l~~spd--~l~sgs------------------------------------~dg~I~vwd~~t~~~~~~l 1059 (1094)
-..++++|+ .+++.. .+|.|..||..+|+.+..+
T Consensus 375 p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~ 454 (668)
T 1kv9_A 375 PSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKV 454 (668)
T ss_dssp SCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEE
T ss_pred CCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEc
Confidence 012577776 444311 2488999999999998887
Q ss_pred cccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1060 QTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1060 ~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
.. ...+....+...+.++++++.||.|+.||.
T Consensus 455 ~~--~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~ 486 (668)
T 1kv9_A 455 PY--PTHWNGGTLSTAGNLVFQGTAAGQMHAYSA 486 (668)
T ss_dssp EE--SSSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred cC--CCCCcCceeEeCCCEEEEECCcccchhhhh
Confidence 53 223444455567889999999999999985
No 351
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.24 E-value=0.00026 Score=85.91 Aligned_cols=77 Identities=14% Similarity=0.198 Sum_probs=56.1
Q ss_pred CEEEEEECCCCeEEEEecCCCCEE--EEEEeCCEEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEE
Q 001349 1004 AAVKMWSTSNYNMVGSLPTLSEVR--AMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLV 1080 (1094)
Q Consensus 1004 ~~I~iwd~~~~~~~~~~~~~~~v~--~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~ 1080 (1094)
+.|..||+.+++.+.+......+. .+....+.++.|+.||.++.||.++|+.+..++.+....-.-+.|..+|+..+
T Consensus 466 G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv 544 (582)
T 1flg_A 466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL 544 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred ceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEE
Confidence 389999999999988877433322 24445668888999999999999999999998644332223366777886443
No 352
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.22 E-value=0.00024 Score=86.25 Aligned_cols=75 Identities=12% Similarity=0.086 Sum_probs=55.4
Q ss_pred CEEEEEECCCCeEEEEecCCCCEE--EEEEeCCEEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCE
Q 001349 1004 AAVKMWSTSNYNMVGSLPTLSEVR--AMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEF 1078 (1094)
Q Consensus 1004 ~~I~iwd~~~~~~~~~~~~~~~v~--~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~ 1078 (1094)
+.|..||+.+++.+.+........ .+....+.++.|+.||.++.||..+|+.+..++.+......-+.|..+|+.
T Consensus 453 G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~q 529 (599)
T 1w6s_A 453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ 529 (599)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred CeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEE
Confidence 389999999999988876432222 245566788889999999999999999999886444333344566678864
No 353
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.18 E-value=0.00028 Score=80.94 Aligned_cols=227 Identities=11% Similarity=0.080 Sum_probs=134.5
Q ss_pred ccCcE-EEEeeCCCCeEEEeCC------cceeecc------c-CCCcEEEEEEeCC-EEEEEECC------CeEEEEecC
Q 001349 783 FEMVK-VLSNGHDSSADFWNHR------ELVHVDS------S-ENGKVLSIACFRD-KIFSGHSD------GTIKVWTGR 841 (1094)
Q Consensus 783 ~d~~~-l~s~s~dg~I~vWd~~------~~~~~~~------~-h~~~V~~l~fspd-~LaSgs~D------g~I~vWd~~ 841 (1094)
.+.++ ++++..+++|.|+|+. +...+.. . .......+.++|+ +++++..+ |.|.+.|..
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~ 172 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHY 172 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECC
Confidence 34554 5567778999999985 1222221 1 1124566778887 66666555 789999999
Q ss_pred CCcceeEEEecccCC---CeEEEEEecCCCEEEEEe-------------------CCCcEEEEECCCCceEEEEecccC-
Q 001349 842 GSILHLIQQIREHTK---AVTGLAILQSGEMLYSGS-------------------LDKTARVWSIGNEEIHCVQVHDIK- 898 (1094)
Q Consensus 842 t~~~~~~~~l~~H~~---~V~sv~fspdg~~LaSgs-------------------~DgtI~vWdi~~~~~~~~~~~~~~- 898 (1094)
+. +.+.++....+ --..+-|+|+++.+++.. .+.+|.+||+.+++ ........
T Consensus 173 T~--~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k--~~~tI~vg~ 248 (462)
T 2ece_A 173 SF--EPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK--RIHSLTLGE 248 (462)
T ss_dssp TC--CEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE--EEEEEESCT
T ss_pred CC--eEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc--EeeEEecCC
Confidence 98 67777752222 234577899999998885 36899999999874 22222221
Q ss_pred --ccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEe---cc
Q 001349 899 --DQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQ---TG 973 (1094)
Q Consensus 899 --~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~---~~ 973 (1094)
.....+. ..|+|+|++..+...- .+- ..+++|.+|....+...... ..
T Consensus 249 ~g~~P~~i~-----f~~~Pdg~~aYV~~e~---~~~-------------------~Lss~V~v~~~d~g~~~~~~vIdi~ 301 (462)
T 2ece_A 249 ENRMALELR-----PLHDPTKLMGFINMVV---SLK-------------------DLSSSIWLWFYEDGKWNAEKVIEIP 301 (462)
T ss_dssp TEEEEEEEE-----ECSSTTCCEEEEEEEE---ETT-------------------TCCEEEEEEEEETTEEEEEEEEEEC
T ss_pred CCCccceeE-----eeECCCCCEEEEEEee---ecc-------------------CCCceEEEEEecCCceeEEEEEeCC
Confidence 1222332 1148888875544420 000 02233333332222211000 00
Q ss_pred ceeec-----------CCCCCeEEEEEeCCccEEEEEECCCCEEEEEECC---CCeEEEEecCCC---------------
Q 001349 974 HRKLL-----------GKANPVHALQVHNGLVYTASTSLDGAAVKMWSTS---NYNMVGSLPTLS--------------- 1024 (1094)
Q Consensus 974 ~~~~~-----------~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~---~~~~~~~~~~~~--------------- 1024 (1094)
..... +-......+.+++|+.++..+....+.|.+||+. +.+.+..+..++
T Consensus 302 ~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~g 381 (462)
T 2ece_A 302 AEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTG 381 (462)
T ss_dssp CEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCS
T ss_pred CccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCC
Confidence 00000 0023567899999999988888777799999986 345666665331
Q ss_pred CEEEEEEeCC--EEEEEE
Q 001349 1025 EVRAMVVSSE--LVYLGC 1040 (1094)
Q Consensus 1025 ~v~~l~~spd--~l~sgs 1040 (1094)
....+.++|| +++++.
T Consensus 382 gPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 382 APQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCCEEECTTSSEEEEEC
T ss_pred CCCEEEEcCCCCEEEEEc
Confidence 3688999998 777776
No 354
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.15 E-value=0.00058 Score=72.20 Aligned_cols=190 Identities=14% Similarity=0.102 Sum_probs=123.4
Q ss_pred eeEEEecccCC--CeEEEEEecCCCEEEEEeCCC--cEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEE
Q 001349 846 HLIQQIREHTK--AVTGLAILQSGEMLYSGSLDK--TARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIK 921 (1094)
Q Consensus 846 ~~~~~l~~H~~--~V~sv~fspdg~~LaSgs~Dg--tI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~ 921 (1094)
+.+.++ .|.. -...+.|+. +.+..+.+.+| .|+++|+.+++..... .........
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~--~l~~~~fge----------------- 68 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRA--EVPPPYFGA----------------- 68 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEE--ECCTTCCEE-----------------
T ss_pred EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEE--eCCCCccee-----------------
Confidence 455666 4654 366899986 66666767654 8999999998633222 111111111
Q ss_pred EEEeCCeEEEEcCCCCceEEEEeCCEEEE-EEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEE
Q 001349 922 VHLRNGKTKLLNSSKYPKCLALVQGKVYC-GCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTS 1000 (1094)
Q Consensus 922 ~~~~~g~i~l~~~~~~v~~l~~s~~~l~s-gs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s 1000 (1094)
.+++.+++++. .-.++.+.+||..+.+.+..+... ++ . ..++.. ++.++++-
T Consensus 69 ------------------Gi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~----~~--G-wglt~d-g~~L~vSd- 121 (243)
T 3mbr_X 69 ------------------GIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYP----GE--G-WALTSD-DSHLYMSD- 121 (243)
T ss_dssp ------------------EEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECS----SC--C-CEEEEC-SSCEEEEC-
T ss_pred ------------------EEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCC----CC--c-eEEeeC-CCEEEEEC-
Confidence 12222333433 345789999999999988654421 21 1 344433 33444443
Q ss_pred CCCCEEEEEECCCCeEEEEecCC------CCEEEEEEeCCEEEEEE-cCCeEEEEECCCCcEEEEeccc-----------
Q 001349 1001 LDGAAVKMWSTSNYNMVGSLPTL------SEVRAMVVSSELVYLGC-KGGTVEIWDQKRQIRIETLQTG----------- 1062 (1094)
Q Consensus 1001 ~Dg~~I~iwd~~~~~~~~~~~~~------~~v~~l~~spd~l~sgs-~dg~I~vwd~~t~~~~~~l~~~----------- 1062 (1094)
.+ ..|.++|..+.+.+.++.-. ..++.+.+....+++.. .++.|.+.|..+|+.+..+..+
T Consensus 122 gs-~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~ 200 (243)
T 3mbr_X 122 GT-AVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTD 200 (243)
T ss_dssp SS-SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCC
T ss_pred CC-CeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccC
Confidence 34 48999999999998888721 45677888877777666 5789999999999999888522
Q ss_pred -CCcceEEEEEcCCCCEEEEEeC
Q 001349 1063 -TSGKVQCMALDDNEEFLVIGTS 1084 (1094)
Q Consensus 1063 -h~~~I~~l~~Spdg~~L~sgs~ 1084 (1094)
.....+.|+|+|+++.|+..+.
T Consensus 201 ~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 201 STNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TTSSCEEEEEEETTTTEEEEEET
T ss_pred CcCCceEEEEEcCCCCEEEEECC
Confidence 1235699999998877776654
No 355
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.15 E-value=3e-07 Score=85.42 Aligned_cols=46 Identities=15% Similarity=0.369 Sum_probs=0.4
Q ss_pred ceeccCccccccCcE-----------------E-cCCcccccHHhHHHHHHhCCCCCCCCCcCCC
Q 001349 163 DFVCPITTHIFDDPV-----------------T-LETGQTYERRAIQEWIERGNSSCPITRQKLS 209 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv-----------------~-~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~ 209 (1094)
+-.|+||++.|.+|. + ++|||.|+..||..|+.. +..||+||+.+.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp C----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence 457999999998853 2 489999999999999988 568999998764
No 356
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.14 E-value=0.0008 Score=72.49 Aligned_cols=195 Identities=10% Similarity=0.034 Sum_probs=123.7
Q ss_pred CcEEEEEEeCC-EEEEEEC---CCeEEEEecCCCcceeEEEecc-cCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCC
Q 001349 814 GKVLSIACFRD-KIFSGHS---DGTIKVWTGRGSILHLIQQIRE-HTKAVTGLAILQSGEMLYSGS-LDKTARVWSIGNE 887 (1094)
Q Consensus 814 ~~V~~l~fspd-~LaSgs~---Dg~I~vWd~~t~~~~~~~~l~~-H~~~V~sv~fspdg~~LaSgs-~DgtI~vWdi~~~ 887 (1094)
.....+.|+++ .|+.++. ++.|++.|..++ +.+..+.- .......+++. |+.|+.+. .++.+.++|..+.
T Consensus 21 ~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg--~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~ 96 (266)
T 2iwa_A 21 AFTQGLVYAENDTLFESTGLYGRSSVRQVALQTG--KVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTL 96 (266)
T ss_dssp CCEEEEEECSTTEEEEEECSTTTCEEEEEETTTC--CEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTT
T ss_pred CCcccEEEeCCCeEEEECCCCCCCEEEEEECCCC--CEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCC
Confidence 34689999995 5555442 689999999999 55665532 11122345554 55555554 5789999999987
Q ss_pred ceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCce
Q 001349 888 EIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTF 967 (1094)
Q Consensus 888 ~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~ 967 (1094)
+. +....... +....+++||+. ++++..++.|.++|..+.+.
T Consensus 97 ~v--~~~i~~g~--------~~g~glt~Dg~~----------------------------l~vs~gs~~l~viD~~t~~v 138 (266)
T 2iwa_A 97 SN--IKNFTHQM--------KDGWGLATDGKI----------------------------LYGSDGTSILYEIDPHTFKL 138 (266)
T ss_dssp EE--EEEEECCS--------SSCCEEEECSSS----------------------------EEEECSSSEEEEECTTTCCE
T ss_pred cE--EEEEECCC--------CCeEEEEECCCE----------------------------EEEECCCCeEEEEECCCCcE
Confidence 52 22221110 112225556654 55555678999999998887
Q ss_pred eEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCC--------------CCEEEEEEeC
Q 001349 968 ATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTL--------------SEVRAMVVSS 1033 (1094)
Q Consensus 968 ~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~--------------~~v~~l~~sp 1033 (1094)
......... ...-..++.+.|. ++...+....+ ..|.+.|..+++.+..+.-. .....++++|
T Consensus 139 ~~~I~Vg~~-~~p~~~~nele~~-dg~lyvn~~~~-~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~ 215 (266)
T 2iwa_A 139 IKKHNVKYN-GHRVIRLNELEYI-NGEVWANIWQT-DCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQ 215 (266)
T ss_dssp EEEEECEET-TEECCCEEEEEEE-TTEEEEEETTS-SEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEET
T ss_pred EEEEEECCC-CcccccceeEEEE-CCEEEEecCCC-CeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcC
Confidence 644321100 0011246778888 55554554344 49999999999999888632 3578999998
Q ss_pred C---EEEEEEcCCeEEEEECCCC
Q 001349 1034 E---LVYLGCKGGTVEIWDQKRQ 1053 (1094)
Q Consensus 1034 d---~l~sgs~dg~I~vwd~~t~ 1053 (1094)
+ +++++...+.+++.++...
T Consensus 216 ~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 216 ENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp TTTEEEEEETTCSEEEEEEEEEC
T ss_pred CCCEEEEECCCCCeEEEEEEecc
Confidence 7 5666667788988886543
No 357
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.11 E-value=0.003 Score=79.56 Aligned_cols=286 Identities=13% Similarity=0.143 Sum_probs=173.1
Q ss_pred EEEeeCCCCeEEEeCCcc--eeecc-------cCCCcEEEEEEeCC-EEEEEECCCeEEEEecCCCcceeEEE-------
Q 001349 788 VLSNGHDSSADFWNHREL--VHVDS-------SENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQ------- 850 (1094)
Q Consensus 788 l~s~s~dg~I~vWd~~~~--~~~~~-------~h~~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~------- 850 (1094)
+..|..+ -+.+||.... ..... .....|.++...++ .|..|+..+-|.++|..++.......
T Consensus 224 lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~ 302 (781)
T 3v9f_A 224 IWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIR 302 (781)
T ss_dssp EEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEEC
T ss_pred EEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeecccccccc
Confidence 3334444 5777886521 11111 12467999998776 88888886778889988763322211
Q ss_pred e-----cccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEec-------c-cCccceeeeecCceEEEeeCC
Q 001349 851 I-----REHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVH-------D-IKDQIQNLAVSNSILCFIPQG 917 (1094)
Q Consensus 851 l-----~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~-------~-~~~~V~~v~~~~~~~~fspdg 917 (1094)
. .-....|.++...++|. |..|+.++-|..|+..++........ . ....|.++. ..++|
T Consensus 303 ~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~-------~d~~g 374 (781)
T 3v9f_A 303 EGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVC-------DDGQG 374 (781)
T ss_dssp BCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEE-------ECTTS
T ss_pred CCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEE-------EcCCC
Confidence 0 01345799999988886 45566666689999887654433211 0 123455554 33333
Q ss_pred CeEEEEEeCCeEEEEcC---------------CCCceEEEEe-CCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCC
Q 001349 918 AGIKVHLRNGKTKLLNS---------------SKYPKCLALV-QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKA 981 (1094)
Q Consensus 918 ~~l~~~~~~g~i~l~~~---------------~~~v~~l~~s-~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~ 981 (1094)
. +-+++.++.+..++. ...|.++... ++.+.+|+.++.+..||..+++....... ....
T Consensus 375 ~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~----~~~~ 449 (781)
T 3v9f_A 375 K-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELE----KNEL 449 (781)
T ss_dssp C-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCST----TTCC
T ss_pred C-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccC----CCCC
Confidence 3 233333332332221 2456777776 57899999888899999887765422110 1234
Q ss_pred CCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-C-----CCCEEEEEEeCC-EEEEEEcCCeEEEEECCCCc
Q 001349 982 NPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-T-----LSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQI 1054 (1094)
Q Consensus 982 ~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~-----~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~ 1054 (1094)
..|.++...+++.+.++.. . -+..||..+++...... . ...|.++..+++ .++.|+.++-|..||..+++
T Consensus 450 ~~v~~i~~d~~g~lwigt~-~--Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~ 526 (781)
T 3v9f_A 450 LDVRVFYEDKNKKIWIGTH-A--GVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQL 526 (781)
T ss_dssp CCEEEEEECTTSEEEEEET-T--EEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCE
T ss_pred CeEEEEEECCCCCEEEEEC-C--ceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCe
Confidence 5789998888777666543 3 59999988765433322 1 356889988877 78888875568889987765
Q ss_pred EEEEeccc---CCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1055 RIETLQTG---TSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1055 ~~~~l~~~---h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
. ..+... ....|.++...++|.+.++ +.+|.|..||
T Consensus 527 ~-~~~~~~~~l~~~~i~~i~~d~~g~lWi~-T~~Glv~~~d 565 (781)
T 3v9f_A 527 V-RKFNQYEGFCSNTINQIYRSSKGQMWLA-TGEGLVCFPS 565 (781)
T ss_dssp E-EEECTTTTCSCSCEEEEEECTTSCEEEE-ETTEEEEESC
T ss_pred E-EEccCCCCCCCCeeEEEEECCCCCEEEE-ECCCceEEEC
Confidence 3 333211 2347899999888876554 4466546665
No 358
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.10 E-value=0.0013 Score=72.79 Aligned_cols=228 Identities=11% Similarity=0.024 Sum_probs=126.1
Q ss_pred CcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCC--cEEEEECCCCce
Q 001349 814 GKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDK--TARVWSIGNEEI 889 (1094)
Q Consensus 814 ~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~Dg--tI~vWdi~~~~~ 889 (1094)
.....++|+++ ++++...++.|..||..++ ....+. ....+..+++.++|+++++..... .|..+|..+++.
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~---~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~ 107 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN---QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV 107 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC---EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc---eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeE
Confidence 45778999886 5555557899999998765 222222 235688999999999766654432 366677777754
Q ss_pred EEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEE-cCCeEEEEECCCCce-
Q 001349 890 HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGC-QDGAIQEIDLATGTF- 967 (1094)
Q Consensus 890 ~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs-~Dg~I~iwDl~~~~~- 967 (1094)
..+...........+ ++.+ ++.+++.. .++.|..+|..++..
T Consensus 108 ~~~~~~~~~~~~~g~-------~~~~-----------------------------~~~~~v~d~~~g~i~~~d~~~~~~~ 151 (306)
T 2p4o_A 108 ETLLTLPDAIFLNGI-------TPLS-----------------------------DTQYLTADSYRGAIWLIDVVQPSGS 151 (306)
T ss_dssp EEEEECTTCSCEEEE-------EESS-----------------------------SSEEEEEETTTTEEEEEETTTTEEE
T ss_pred EEEEeCCCccccCcc-------cccC-----------------------------CCcEEEEECCCCeEEEEeCCCCcEe
Confidence 333222110000111 1111 12233333 467788888765432
Q ss_pred eEEeccc-e--eecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCC-CeE--EEEecCCCCEEEEEEeCC-EEEEE-
Q 001349 968 ATIQTGH-R--KLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSN-YNM--VGSLPTLSEVRAMVVSSE-LVYLG- 1039 (1094)
Q Consensus 968 ~~~~~~~-~--~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~-~~~--~~~~~~~~~v~~l~~spd-~l~sg- 1039 (1094)
+...... . ...+.-...+.+ ++++.++..+....+.|..||+.. +.. ...+........++++++ .++++
T Consensus 152 v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~ 229 (306)
T 2p4o_A 152 IWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGAT 229 (306)
T ss_dssp EEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEEC
T ss_pred EEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEe
Confidence 1100000 0 001111234455 666654444444445999999864 321 122221234566888887 44544
Q ss_pred EcCCeEEEEECCCCcEEE--EecccCCcceEEEEEc---CCCCEEEEEeCC
Q 001349 1040 CKGGTVEIWDQKRQIRIE--TLQTGTSGKVQCMALD---DNEEFLVIGTSD 1085 (1094)
Q Consensus 1040 s~dg~I~vwd~~t~~~~~--~l~~~h~~~I~~l~~S---pdg~~L~sgs~D 1085 (1094)
...+.|.+||.. ++... .+. ......++++|. ||++.|+.++..
T Consensus 230 ~~~~~V~~~~~~-G~~~~~~~~~-~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 230 HIYNSVVRIAPD-RSTTIIAQAE-QGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp BTTCCEEEECTT-CCEEEEECGG-GTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred CCCCeEEEECCC-CCEEEEeecc-cccCCceEEEEecccCCCCEEEEECCC
Confidence 456889999975 65432 232 223468999998 898887766653
No 359
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.10 E-value=0.0007 Score=82.09 Aligned_cols=256 Identities=15% Similarity=0.153 Sum_probs=140.8
Q ss_pred EEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccCC----CeE-EEEEec---CCC-EEEEEe------CCCcEEEEE
Q 001349 819 IACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTK----AVT-GLAILQ---SGE-MLYSGS------LDKTARVWS 883 (1094)
Q Consensus 819 l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~----~V~-sv~fsp---dg~-~LaSgs------~DgtI~vWd 883 (1094)
+++..+.++.++.|+.|..+|..+| +.+........ .+. +-.+.. +|+ .+++++ .+|.|.-+|
T Consensus 113 ~a~~~~~v~~~t~dg~l~AlD~~TG--~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD 190 (582)
T 1flg_A 113 AAIYGDKVFFGTLDASVVALNKNTG--KVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARD 190 (582)
T ss_dssp CEEETTEEEEEETTTEEEEEESSSC--CEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEEC
T ss_pred cEEECCEEEEEeCCCEEEEEECCCC--CEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEE
Confidence 3456678999999999999999999 56655443220 111 111111 233 566655 378999999
Q ss_pred CCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEc--------------CC-CC-ceEEEEe--C
Q 001349 884 IGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN--------------SS-KY-PKCLALV--Q 945 (1094)
Q Consensus 884 i~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~--------------~~-~~-v~~l~~s--~ 945 (1094)
..+|+..-.... .. +. +.|++........+.....|. .. .. -..++++ .
T Consensus 191 ~~tG~~~W~~~~--~~----~~-------~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~ 257 (582)
T 1flg_A 191 PDTGEEIWMRPF--VE----GH-------MGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAET 257 (582)
T ss_dssp TTTCCEEEEEES--ST----TC-------EEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTT
T ss_pred CCCCCEEeecCC--Cc----cc-------cccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCC
Confidence 999874332211 10 00 122211111110000000000 00 00 0123333 2
Q ss_pred CEEEEEEc--------------------C----CeEEEEECCCCceeEEeccce-e---ecCCCCCeEEEEEe-CCc---
Q 001349 946 GKVYCGCQ--------------------D----GAIQEIDLATGTFATIQTGHR-K---LLGKANPVHALQVH-NGL--- 993 (1094)
Q Consensus 946 ~~l~sgs~--------------------D----g~I~iwDl~~~~~~~~~~~~~-~---~~~h~~~V~sl~fs-~~~--- 993 (1094)
+.+++++. | +.|..+|..+|+....++... . +.+...++. +... .++
T Consensus 258 g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~ 336 (582)
T 1flg_A 258 NTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIV 336 (582)
T ss_dssp TEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEE
T ss_pred CEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEE
Confidence 55666653 2 689999999999886543210 0 001112222 2222 355
Q ss_pred cEEEEEECCCCEEEEEECCCCeEEEEecCCC---CE-------------------------------------------E
Q 001349 994 VYTASTSLDGAAVKMWSTSNYNMVGSLPTLS---EV-------------------------------------------R 1027 (1094)
Q Consensus 994 ~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~---~v-------------------------------------------~ 1027 (1094)
.+++.++.+| .+.++|..+|+.+..+.... .. .
T Consensus 337 ~~v~~~~~~G-~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~ 415 (582)
T 1flg_A 337 KATAHADRNG-FFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWN 415 (582)
T ss_dssp EEEEEECTTS-EEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSS
T ss_pred EEEEEECCCc-eEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCC
Confidence 3667777776 99999999999887665221 00 1
Q ss_pred EEEEeCC--EEEEEE---------------------------------cCCeEEEEECCCCcEEEEecccCCcceEEEEE
Q 001349 1028 AMVVSSE--LVYLGC---------------------------------KGGTVEIWDQKRQIRIETLQTGTSGKVQCMAL 1072 (1094)
Q Consensus 1028 ~l~~spd--~l~sgs---------------------------------~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~ 1072 (1094)
.++++|+ .+++.. .+|.|..||+.+++.+.....+. .+..-..
T Consensus 416 ~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~--~~~~g~~ 493 (582)
T 1flg_A 416 PMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL--PLWAGVL 493 (582)
T ss_dssp CCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS--CCCSCCE
T ss_pred CceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC--CCcccce
Confidence 3455665 333322 25889999999999887775322 2222222
Q ss_pred cCCCCEEEEEeCCCcEEEEeC
Q 001349 1073 DDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1073 Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
...+.+++.|+.||.++.||.
T Consensus 494 ~tagglvf~g~~dg~l~A~D~ 514 (582)
T 1flg_A 494 ATAGNLVFTGTGDGYFKAFDA 514 (582)
T ss_dssp EETTTEEEEECTTSEEEEEET
T ss_pred EeCCCEEEEECCCCcEEEEEC
Confidence 234678888999999999986
No 360
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.08 E-value=0.00037 Score=74.40 Aligned_cols=188 Identities=11% Similarity=0.158 Sum_probs=121.6
Q ss_pred eEEEecccCCC--eEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEE
Q 001349 847 LIQQIREHTKA--VTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHL 924 (1094)
Q Consensus 847 ~~~~l~~H~~~--V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~ 924 (1094)
.+.++ .|... ...+.|+ ++.+.++.+.+|.|+++|+.+++..... . .......- ..++|.
T Consensus 45 Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l--~~~~FgeG-------it~~g~------ 106 (268)
T 3nok_A 45 IIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-R--LGNIFAEG-------LASDGE------ 106 (268)
T ss_dssp EEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-E--CTTCCEEE-------EEECSS------
T ss_pred EEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-C--CCCcceeE-------EEEeCC------
Confidence 44555 35433 4688887 4677788888899999999998732222 1 11111111 222332
Q ss_pred eCCeEEEEcCCCCceEEEEeCCEEEE-EEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCC
Q 001349 925 RNGKTKLLNSSKYPKCLALVQGKVYC-GCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG 1003 (1094)
Q Consensus 925 ~~g~i~l~~~~~~v~~l~~s~~~l~s-gs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg 1003 (1094)
+++. .-.++.+.+||..+.+.+..+.. .++. ..+++. +..+..+..+
T Consensus 107 ----------------------~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~----~~eG---wGLt~D--g~~L~vSdGs- 154 (268)
T 3nok_A 107 ----------------------RLYQLTWTEGLLFTWSGMPPQRERTTRY----SGEG---WGLCYW--NGKLVRSDGG- 154 (268)
T ss_dssp ----------------------CEEEEESSSCEEEEEETTTTEEEEEEEC----SSCC---CCEEEE--TTEEEEECSS-
T ss_pred ----------------------EEEEEEccCCEEEEEECCcCcEEEEEeC----CCce---eEEecC--CCEEEEECCC-
Confidence 2333 33578899999999998865442 1221 344443 3333333334
Q ss_pred CEEEEEECCCCeEEEEecC---C---CCEEEEEEeCCEEEEEE-cCCeEEEEECCCCcEEEEeccc------------CC
Q 001349 1004 AAVKMWSTSNYNMVGSLPT---L---SEVRAMVVSSELVYLGC-KGGTVEIWDQKRQIRIETLQTG------------TS 1064 (1094)
Q Consensus 1004 ~~I~iwd~~~~~~~~~~~~---~---~~v~~l~~spd~l~sgs-~dg~I~vwd~~t~~~~~~l~~~------------h~ 1064 (1094)
..|.++|..+.+.+.++.- + ..++.+.|....+++.. .++.|.+.|..+++.+..+... ..
T Consensus 155 ~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~ 234 (268)
T 3nok_A 155 TMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPE 234 (268)
T ss_dssp SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTT
T ss_pred CEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcC
Confidence 4999999999999888872 1 34577888866777766 5789999999999999888532 11
Q ss_pred cceEEEEEcCCCCEEEEEeC
Q 001349 1065 GKVQCMALDDNEEFLVIGTS 1084 (1094)
Q Consensus 1065 ~~I~~l~~Spdg~~L~sgs~ 1084 (1094)
...+.|||+|+++.|+..+.
T Consensus 235 ~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 235 AVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp CCEEEEEECTTTCCEEEEET
T ss_pred CceEEEEEcCCCCEEEEeCC
Confidence 35799999998766655553
No 361
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.07 E-value=3.1e-06 Score=73.22 Aligned_cols=50 Identities=14% Similarity=0.370 Sum_probs=42.2
Q ss_pred ceeccCccccc--cCcEEcCCc-----ccccHHhHHHHHHhCC-CCCCCCCcCCCCCC
Q 001349 163 DFVCPITTHIF--DDPVTLETG-----QTYERRAIQEWIERGN-SSCPITRQKLSSTK 212 (1094)
Q Consensus 163 ~~~CpIc~~~~--~dPv~~~cG-----htfc~~ci~~~~~~~~-~~CP~c~~~~~~~~ 212 (1094)
+..|+||++-+ .+|++++|+ |.|-..||.+|+.... ..||+||..+....
T Consensus 15 ~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 15 QDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp SCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 67899999877 478999996 9999999999998743 57999999886544
No 362
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.05 E-value=0.0057 Score=77.01 Aligned_cols=290 Identities=11% Similarity=0.080 Sum_probs=169.0
Q ss_pred cEEEEeeCCCCeEEEeCCcce-eecc--------cCCCcEEEEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEec---
Q 001349 786 VKVLSNGHDSSADFWNHRELV-HVDS--------SENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIR--- 852 (1094)
Q Consensus 786 ~~l~s~s~dg~I~vWd~~~~~-~~~~--------~h~~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~--- 852 (1094)
..+..+..++-+..||..... ..+. .....|.++...++ .|..|+.+ -+.+||..++.........
T Consensus 174 g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~ 252 (781)
T 3v9f_A 174 GKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTSK-GLALFNANTETFTNFHNNPGNI 252 (781)
T ss_dssp TEEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEETT-EEEEEETTTTEEEC--------
T ss_pred CCEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeCC-cHheECCCCCcEEEEEcCCCcc
Confidence 345556556457778765321 1111 12356899988775 66667766 6889998877322221111
Q ss_pred --ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEe-------c------ccCccceeeeecCceEEEeeCC
Q 001349 853 --EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQV-------H------DIKDQIQNLAVSNSILCFIPQG 917 (1094)
Q Consensus 853 --~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~-------~------~~~~~V~~v~~~~~~~~fspdg 917 (1094)
-....|.++...++|.+. .|+..+-|.++|..++....... . -....|.++. ..++|
T Consensus 253 ~~l~~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~-------~D~~g 324 (781)
T 3v9f_A 253 HGALSSYIFSIKQLKDNKLW-IATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIF-------QDSFN 324 (781)
T ss_dssp ---CCCCEEEEEECTTSEEE-EEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEE-------ECSSC
T ss_pred ccccCceEEEEEECCCCCEE-EEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEE-------EeCCC
Confidence 124569999988877654 46664558899988765332221 0 0123344544 34444
Q ss_pred CeEEEEEeCCeEEEEcC---------------------CCCceEEEEeC-CEEEEEEcCCeEEEEECCCCceeEEeccce
Q 001349 918 AGIKVHLRNGKTKLLNS---------------------SKYPKCLALVQ-GKVYCGCQDGAIQEIDLATGTFATIQTGHR 975 (1094)
Q Consensus 918 ~~l~~~~~~g~i~l~~~---------------------~~~v~~l~~s~-~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~ 975 (1094)
. +-++..++.+..++. ...|.++...+ +.+.+|+.++.|..||..++..... ..
T Consensus 325 ~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~-~~-- 400 (781)
T 3v9f_A 325 N-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYN-KE-- 400 (781)
T ss_dssp C-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----
T ss_pred C-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEc-cC--
Confidence 3 333443433333321 23467777764 7899999888899999876543321 10
Q ss_pred eecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec---CCCCEEEEEEeCC-EEEEEEcCCeEEEEECC
Q 001349 976 KLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP---TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQK 1051 (1094)
Q Consensus 976 ~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~---~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~ 1051 (1094)
........|.++...+++.+.+.. .++ -+..||..+++...... ....|.++...++ .++.|+. +-|..||..
T Consensus 401 ~~~~~~~~v~~i~~d~~g~lWigt-~~~-Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~ 477 (781)
T 3v9f_A 401 NRELLSNSVLCSLKDSEGNLWFGT-YLG-NISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLA 477 (781)
T ss_dssp ---CCCSBEEEEEECTTSCEEEEE-TTE-EEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESS
T ss_pred CCCCCCcceEEEEECCCCCEEEEe-ccC-CEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCC
Confidence 011234578899888776655543 333 68899987775433221 3467899988876 7888887 569999988
Q ss_pred CCcEEEEeccc----CCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1052 RQIRIETLQTG----TSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1052 t~~~~~~l~~~----h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
+++........ ....|.++...++|.+.+....+| |..||
T Consensus 478 ~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~ 521 (781)
T 3v9f_A 478 SKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYT 521 (781)
T ss_dssp SSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEEC
T ss_pred CCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEe
Confidence 76643332111 135799999999887655443344 55565
No 363
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.95 E-value=0.0019 Score=68.83 Aligned_cols=182 Identities=12% Similarity=0.029 Sum_probs=112.7
Q ss_pred CcEEEEEEeCC-EEEEEECCC--eEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCce
Q 001349 814 GKVLSIACFRD-KIFSGHSDG--TIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGS-LDKTARVWSIGNEEI 889 (1094)
Q Consensus 814 ~~V~~l~fspd-~LaSgs~Dg--~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs-~DgtI~vWdi~~~~~ 889 (1094)
.-...+.|+.+ ++.+.+.+| .|+++|+.++ +.+..+.-. .......+.++++.|+... .++.+.+||..+.+.
T Consensus 43 ~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tg--kv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~ 119 (262)
T 3nol_A 43 AFTEGFFYRNGYFYESTGLNGRSSIRKVDIESG--KTLQQIELG-KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQ 119 (262)
T ss_dssp CEEEEEEEETTEEEEEEEETTEEEEEEECTTTC--CEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCE
T ss_pred cccceEEEECCEEEEECCCCCCceEEEEECCCC--cEEEEEecC-CccceeEEEEeCCEEEEEEeeCCEEEEEECccCcE
Confidence 34578899966 555556655 8999999999 556655432 3343333344455666555 478999999998752
Q ss_pred EEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeE
Q 001349 890 HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFAT 969 (1094)
Q Consensus 890 ~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~ 969 (1094)
. ....... ....+++||+ .++....++.|.++|..+.+...
T Consensus 120 ~--~ti~~~~---------eG~glt~dg~----------------------------~L~~SdGs~~i~~iDp~T~~v~~ 160 (262)
T 3nol_A 120 V--RSFNYDG---------EGWGLTHNDQ----------------------------YLIMSDGTPVLRFLDPESLTPVR 160 (262)
T ss_dssp E--EEEECSS---------CCCCEEECSS----------------------------CEEECCSSSEEEEECTTTCSEEE
T ss_pred E--EEEECCC---------CceEEecCCC----------------------------EEEEECCCCeEEEEcCCCCeEEE
Confidence 2 2221111 1111444444 35555557789999999988775
Q ss_pred EeccceeecCCC-CCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecC-------------CCCEEEEEEeCC-
Q 001349 970 IQTGHRKLLGKA-NPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT-------------LSEVRAMVVSSE- 1034 (1094)
Q Consensus 970 ~~~~~~~~~~h~-~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~-------------~~~v~~l~~spd- 1034 (1094)
..... ..+.. ..++.+.|. ++...+..-.+ ..|.+.|..+++.+..+.- ....++++++|+
T Consensus 161 ~I~V~--~~g~~~~~lNELe~~-~G~lyan~w~~-~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~ 236 (262)
T 3nol_A 161 TITVT--AHGEELPELNELEWV-DGEIFANVWQT-NKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEH 236 (262)
T ss_dssp EEECE--ETTEECCCEEEEEEE-TTEEEEEETTS-SEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTT
T ss_pred EEEec--cCCccccccceeEEE-CCEEEEEEccC-CeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCC
Confidence 43221 11111 345567777 44444544344 4999999999999888863 135689999987
Q ss_pred -EEEEEEc
Q 001349 1035 -LVYLGCK 1041 (1094)
Q Consensus 1035 -~l~sgs~ 1041 (1094)
.+++.+.
T Consensus 237 ~~lfVTGK 244 (262)
T 3nol_A 237 HRLFVTGK 244 (262)
T ss_dssp TEEEEEET
T ss_pred CEEEEECC
Confidence 5555554
No 364
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.94 E-value=0.0031 Score=76.45 Aligned_cols=265 Identities=13% Similarity=0.070 Sum_probs=148.1
Q ss_pred eCCEEEEEEC-CCeEEEEec-CCCcceeEEEecccCCC-----------eEEEEEecCCCE----EEEEeCCCcEEEEEC
Q 001349 822 FRDKIFSGHS-DGTIKVWTG-RGSILHLIQQIREHTKA-----------VTGLAILQSGEM----LYSGSLDKTARVWSI 884 (1094)
Q Consensus 822 spd~LaSgs~-Dg~I~vWd~-~t~~~~~~~~l~~H~~~-----------V~sv~fspdg~~----LaSgs~DgtI~vWdi 884 (1094)
..+.++.++. ++.|.-+|. .++ +.+..+...... ...++++|.+.. ++.++.|+.+.-+|.
T Consensus 61 ~~g~vyv~~~~~~~v~AlD~~~tG--~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa 138 (599)
T 1w6s_A 61 VDGKMYIHTSFPNNTFALGLDDPG--TILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNA 138 (599)
T ss_dssp ETTEEEEECSTTTCEEEEETTCTT--SEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEET
T ss_pred ECCEEEEEeCCCCEEEEEeCCCCC--cEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEEC
Confidence 3568888887 899999999 899 666666432210 123556544444 888899999999999
Q ss_pred CCCceEEEEeccc-C--cccee-eeecCceEEEee-------CCCeEEEEEeCCeEEEEc--CCCCc-------------
Q 001349 885 GNEEIHCVQVHDI-K--DQIQN-LAVSNSILCFIP-------QGAGIKVHLRNGKTKLLN--SSKYP------------- 938 (1094)
Q Consensus 885 ~~~~~~~~~~~~~-~--~~V~~-v~~~~~~~~fsp-------dg~~l~~~~~~g~i~l~~--~~~~v------------- 938 (1094)
.+|+..-...... . ..+.+ -.+....+.+.. +|...+....+|.. +|. .....
T Consensus 139 ~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~-~W~~~~~~~~~~~~~~p~~~~~~ 217 (599)
T 1w6s_A 139 ETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQ-VWRAYATGPDKDLLLASDFNIKN 217 (599)
T ss_dssp TTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCE-EEEEESSSCHHHHTBCTTTTTTC
T ss_pred CCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcE-EEEEcCCCCcccccccccccccc
Confidence 9997432222111 0 01111 011111111211 12222222122322 221 11110
Q ss_pred --------------------------eEEEE--eCCEEEEEEcCC----------------eEEEEECCCCceeEEeccc
Q 001349 939 --------------------------KCLAL--VQGKVYCGCQDG----------------AIQEIDLATGTFATIQTGH 974 (1094)
Q Consensus 939 --------------------------~~l~~--s~~~l~sgs~Dg----------------~I~iwDl~~~~~~~~~~~~ 974 (1094)
..+++ ..+.++.++.++ .|..+|..+|+....++..
T Consensus 218 ~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~ 297 (599)
T 1w6s_A 218 PHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKT 297 (599)
T ss_dssp GGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESS
T ss_pred ccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecC
Confidence 01233 346788887663 8999999999988654321
Q ss_pred ee----ecCCCCCeEEEEEe-CCc---cEEEEEECCCCEEEEEECCCCeEEEEecCCC--------------CE------
Q 001349 975 RK----LLGKANPVHALQVH-NGL---VYTASTSLDGAAVKMWSTSNYNMVGSLPTLS--------------EV------ 1026 (1094)
Q Consensus 975 ~~----~~~h~~~V~sl~fs-~~~---~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~--------------~v------ 1026 (1094)
.. +.....++. +... .++ ..++.++.+| .+.++|..+|+.+....... ++
T Consensus 298 ~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G-~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~ 375 (599)
T 1w6s_A 298 PHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNG-IVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYG 375 (599)
T ss_dssp TTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTS-EEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGC
T ss_pred CCccccccCCCccEE-EeccccCCcEEEEEEEECCCc-EEEEEECCCCCEeecccccCCcccccccccCCCceeeccccC
Confidence 10 001112222 2222 455 4666677776 99999999999887664110 11
Q ss_pred --------------------EEEEEeCC--EEEEE---------------------------------E------cCCeE
Q 001349 1027 --------------------RAMVVSSE--LVYLG---------------------------------C------KGGTV 1045 (1094)
Q Consensus 1027 --------------------~~l~~spd--~l~sg---------------------------------s------~dg~I 1045 (1094)
..++++|+ .+++. + .+|.|
T Consensus 376 ~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l 455 (599)
T 1w6s_A 376 TRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQI 455 (599)
T ss_dssp CCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEE
T ss_pred CCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeE
Confidence 13456655 33221 1 34789
Q ss_pred EEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1046 EIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1046 ~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
..||+.+++.+.....+. ++..-.+...+.+++.++.||.++.||.
T Consensus 456 ~A~D~~tG~~~W~~~~~~--~~~~g~~~tagg~vf~gt~dg~l~A~D~ 501 (599)
T 1w6s_A 456 KAYNAITGDYKWEKMERF--AVWGGTMATAGDLVFYGTLDGYLKARDS 501 (599)
T ss_dssp EEECTTTCCEEEEEEESS--CCCSBCEEETTTEEEEECTTSEEEEEET
T ss_pred EEEECCCCCEEeEecCCC--CccCcceEecCCEEEEECCCCeEEEEEC
Confidence 999999999888774322 2222123335778888999999999985
No 365
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.94 E-value=0.008 Score=64.61 Aligned_cols=214 Identities=11% Similarity=0.012 Sum_probs=119.3
Q ss_pred CeEEEEecCCCccee---EEEecccCCCeEEEEEecCCCEEE-EEeCCCcEEEEECCCCceEEEEecccCccceeeeecC
Q 001349 833 GTIKVWTGRGSILHL---IQQIREHTKAVTGLAILQSGEMLY-SGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSN 908 (1094)
Q Consensus 833 g~I~vWd~~t~~~~~---~~~l~~H~~~V~sv~fspdg~~La-Sgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~ 908 (1094)
+.|+.+|+.+..... ...+......+..++|++++..|+ +-..++.|..++.+++....+.... ......
T Consensus 10 ~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~-~~~p~~----- 83 (267)
T 1npe_A 10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD-LGSPEG----- 83 (267)
T ss_dssp EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTT-CCCEEE-----
T ss_pred CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECC-CCCccE-----
Confidence 478889987653210 111222234578999999665555 4445789999998775422211100 011222
Q ss_pred ceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEE-EcCCeEEEEECCCCceeEEeccceeecCCCCCeEEE
Q 001349 909 SILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCG-CQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHAL 987 (1094)
Q Consensus 909 ~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sg-s~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl 987 (1094)
+++.+++. .++.+ ...+.|.++|+......... .........+
T Consensus 84 --ia~d~~~~----------------------------~lyv~d~~~~~I~~~~~~g~~~~~~~------~~~~~~P~~i 127 (267)
T 1npe_A 84 --IALDHLGR----------------------------TIFWTDSQLDRIEVAKMDGTQRRVLF------DTGLVNPRGI 127 (267)
T ss_dssp --EEEETTTT----------------------------EEEEEETTTTEEEEEETTSCSCEEEE------CSSCSSEEEE
T ss_pred --EEEEecCC----------------------------eEEEEECCCCEEEEEEcCCCCEEEEE------ECCCCCccEE
Confidence 22454443 33333 34567888887643322111 1112456889
Q ss_pred EEeCC-ccEEEEEEC-CCCEEEEEECCCCeEEEEec--CCCCEEEEEEeCC--EEEEEE-cCCeEEEEECCCCcEEEEec
Q 001349 988 QVHNG-LVYTASTSL-DGAAVKMWSTSNYNMVGSLP--TLSEVRAMVVSSE--LVYLGC-KGGTVEIWDQKRQIRIETLQ 1060 (1094)
Q Consensus 988 ~fs~~-~~~las~s~-Dg~~I~iwd~~~~~~~~~~~--~~~~v~~l~~spd--~l~sgs-~dg~I~vwd~~t~~~~~~l~ 1060 (1094)
+++++ +.+.++... +.+.|..++.... ....+. .......++++++ .++.+. ..+.|.++|.........+.
T Consensus 128 ~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~ 206 (267)
T 1npe_A 128 VTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE 206 (267)
T ss_dssp EEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE
T ss_pred EEeeCCCEEEEEECCCCCcEEEEEecCCC-CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec
Confidence 99985 444444332 1248888887543 222232 3356889999985 555554 56899999998655443332
Q ss_pred ccCCcceEEEEEcCCCCEEEEEe-CCCcEEEEeC
Q 001349 1061 TGTSGKVQCMALDDNEEFLVIGT-SDGRIQAWGL 1093 (1094)
Q Consensus 1061 ~~h~~~I~~l~~Spdg~~L~sgs-~DG~I~iWdl 1093 (1094)
+ ......+++. +..|+.+. .++.|.++|.
T Consensus 207 -~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~ 236 (267)
T 1npe_A 207 -G-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDL 236 (267)
T ss_dssp -C-CCSEEEEEEE--TTEEEEEETTTTEEEEEET
T ss_pred -C-CCCceEEEEe--CCEEEEEECCCCeEEEEeC
Confidence 2 2345677664 44555444 5678888875
No 366
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.92 E-value=0.00035 Score=82.98 Aligned_cols=202 Identities=12% Similarity=0.093 Sum_probs=119.6
Q ss_pred CCCEEEEEeC-CCcEEEEECCCCceEEEEecccCccceeeeecCceEEE-e-eCCCeEEEEEeCCeEEEEcCCCCceEEE
Q 001349 866 SGEMLYSGSL-DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCF-I-PQGAGIKVHLRNGKTKLLNSSKYPKCLA 942 (1094)
Q Consensus 866 dg~~LaSgs~-DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~f-s-pdg~~l~~~~~~g~i~l~~~~~~v~~l~ 942 (1094)
||++++.... ++.|.+.|+.+.+...+...+.......+. + + |+++++.+...... -+-+....+.
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~-------~~~~p~~~~v~~~~~~~~-p~~~dg~~l~--- 168 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLR-------PQKWPRSNYVFCNGEDET-PLVNDGTNME--- 168 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEE-------ECCSSBCSEEEEEECSCE-ESSCSSSSTT---
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCccee-------eeecCCCcEEEEeccccc-ccCCCCcccc---
Confidence 7888877665 456999999997533222333333444444 5 4 88888766542210 0000000000
Q ss_pred EeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCC-------------------
Q 001349 943 LVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG------------------- 1003 (1094)
Q Consensus 943 ~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg------------------- 1003 (1094)
...-.++.+.++|..+.+...... ..+ ....+++++++.++.+++.+.
T Consensus 169 ------~~~~~~~~vtvID~~t~~v~~qI~----Vgg---~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V 235 (595)
T 1fwx_A 169 ------DVANYVNVFTAVDADKWEVAWQVL----VSG---NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVV 235 (595)
T ss_dssp ------CGGGEEEEEEEEETTTTEEEEEEE----ESS---CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEE
T ss_pred ------cccccCceEEEEECCCCeEEEEEE----eCC---CccceEECCCCCEEEEEecCcccCcchhhccccccceEEE
Confidence 000123456666766665543211 111 223455666666666665442
Q ss_pred ------------------CEEEEEECCC--CeE-EEEecCCCCEEEEEEeCC--EEEE-EEcCCeEEEEECCCCc-----
Q 001349 1004 ------------------AAVKMWSTSN--YNM-VGSLPTLSEVRAMVVSSE--LVYL-GCKGGTVEIWDQKRQI----- 1054 (1094)
Q Consensus 1004 ------------------~~I~iwd~~~--~~~-~~~~~~~~~v~~l~~spd--~l~s-gs~dg~I~vwd~~t~~----- 1054 (1094)
+.|.+.|..+ ++. +..+.-.....++.++|| ++++ +-.+++|.++|+.+.+
T Consensus 236 ~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~ 315 (595)
T 1fwx_A 236 FNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYE 315 (595)
T ss_dssp EEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHS
T ss_pred eeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccccc
Confidence 1478888887 555 666665667778999999 4444 4568999999999653
Q ss_pred -------EEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1055 -------RIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1055 -------~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
....+. -......++|+|||...++.--|+.|.+||+
T Consensus 316 ~l~~~~~v~~~v~--vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi 359 (595)
T 1fwx_A 316 NADPRSAVVAEPE--LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNI 359 (595)
T ss_dssp CCCGGGGEEECCB--CCSCEEEEEECTTSEEEEEETTTTEEEEEEH
T ss_pred ccCcccceEEEcC--CCCCcceEEECCCCeEEEEEecCCcEEEEEh
Confidence 344443 2346899999999944445667999999986
No 367
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.88 E-value=0.0096 Score=68.14 Aligned_cols=225 Identities=8% Similarity=-0.006 Sum_probs=128.4
Q ss_pred CCCCeEEEeCCc-ceeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCC-
Q 001349 793 HDSSADFWNHRE-LVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSG- 867 (1094)
Q Consensus 793 ~dg~I~vWd~~~-~~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg- 867 (1094)
....|+.++... ....+......+..++|++. ++++-...+.|..|+..++. ....+.........+++.+.+
T Consensus 94 ~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~--~~~~~~~~~~~p~glavd~~~g 171 (386)
T 3v65_B 94 NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN--VEEVVSTGLESPGGLAVDWVHD 171 (386)
T ss_dssp CBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC--EEEEECSSCSCCCCEEEETTTT
T ss_pred cCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC--cEEEEeCCCCCccEEEEEeCCC
Confidence 345677777762 22223333456889999963 55555677899999998762 222233233455778898754
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCE
Q 001349 868 EMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGK 947 (1094)
Q Consensus 868 ~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~ 947 (1094)
.+.++-...+.|.+.+++......+.... -.....+ ++.|.+..+.+..
T Consensus 172 ~lY~~d~~~~~I~~~~~dg~~~~~l~~~~-l~~P~gi-------avdp~~g~ly~td----------------------- 220 (386)
T 3v65_B 172 KLYWTDSGTSRIEVANLDGAHRKVLLWQS-LEKPRAI-------ALHPMEGTIYWTD----------------------- 220 (386)
T ss_dssp EEEEEETTTTEEEECBTTSCSCEEEECSS-CSCEEEE-------EEETTTTEEEEEE-----------------------
T ss_pred eEEEEcCCCCeEEEEeCCCCceEEeecCC-CCCCcEE-------EEEcCCCeEEEec-----------------------
Confidence 44455556678888888764322222111 1112222 3555544332222
Q ss_pred EEEEEcC-CeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCC
Q 001349 948 VYCGCQD-GAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSE 1025 (1094)
Q Consensus 948 l~sgs~D-g~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~ 1025 (1094)
..+ +.|..+++......... ...-...+.+++++++..+..+....+.|..+|+........+. ....
T Consensus 221 ----~~~~~~I~r~~~dG~~~~~~~------~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~ 290 (386)
T 3v65_B 221 ----WGNTPRIEASSMDGSGRRIIA------DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPH 290 (386)
T ss_dssp ----CSSSCEEEEEETTSCSCEEEE------CSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSS
T ss_pred ----cCCCCEEEEEeCCCCCcEEEE------ECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCC
Confidence 122 55666666543222111 11223568899996555444444444589999986543332233 3456
Q ss_pred EEEEEEeCCEEEEE-EcCCeEEEEECCCCcEEEEec
Q 001349 1026 VRAMVVSSELVYLG-CKGGTVEIWDQKRQIRIETLQ 1060 (1094)
Q Consensus 1026 v~~l~~spd~l~sg-s~dg~I~vwd~~t~~~~~~l~ 1060 (1094)
..++++..+.++.+ ...+.|..+|..+|+....+.
T Consensus 291 P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 291 PFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp EEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred ceEEEEECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 78888877755544 467889999977777666663
No 368
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.87 E-value=0.02 Score=64.57 Aligned_cols=223 Identities=9% Similarity=-0.013 Sum_probs=127.3
Q ss_pred CCCeEEEeCCc-ceeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecC-CC
Q 001349 794 DSSADFWNHRE-LVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS-GE 868 (1094)
Q Consensus 794 dg~I~vWd~~~-~~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspd-g~ 868 (1094)
.+.|+..+... ...........+..++|++. ++++-...+.|..++..++. ....+.........+++.+. +.
T Consensus 52 ~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~--~~~~~~~~~~~p~glavd~~~g~ 129 (349)
T 3v64_C 52 RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN--VEEVVSTGLESPGGLAVDWVHDK 129 (349)
T ss_dssp BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEEECSSCSCCCEEEEETTTTE
T ss_pred ccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCC--ceEEEeCCCCCccEEEEecCCCe
Confidence 34566666652 22222233455889999963 55555577899999998763 22223323345678999875 44
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEE
Q 001349 869 MLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKV 948 (1094)
Q Consensus 869 ~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l 948 (1094)
+.++-...+.|.+.+.+......+.... -.....+ ++.|.+..+.+..
T Consensus 130 ly~~d~~~~~I~~~~~dG~~~~~l~~~~-l~~P~~i-------avdp~~g~ly~td------------------------ 177 (349)
T 3v64_C 130 LYWTDSGTSRIEVANLDGAHRKVLLWQS-LEKPRAI-------ALHPMEGTIYWTD------------------------ 177 (349)
T ss_dssp EEEEETTTTEEEEEETTSCSCEEEECTT-CSCEEEE-------EEETTTTEEEEEE------------------------
T ss_pred EEEEcCCCCeEEEEcCCCCceEEEEeCC-CCCcceE-------EEecCcCeEEEec------------------------
Confidence 5555566788999998765322222111 1112223 3555444332222
Q ss_pred EEEEcC-CeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCE
Q 001349 949 YCGCQD-GAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEV 1026 (1094)
Q Consensus 949 ~sgs~D-g~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v 1026 (1094)
..+ +.|..+++........ ....-...+.+++++++..+..+....+.|..+|+........+. .....
T Consensus 178 ---~~~~~~I~r~~~dG~~~~~~------~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P 248 (349)
T 3v64_C 178 ---WGNTPRIEASSMDGSGRRII------ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHP 248 (349)
T ss_dssp ---CSSSCEEEEEETTSCSCEES------CCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSE
T ss_pred ---cCCCCEEEEEeCCCCCcEEE------EECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCc
Confidence 222 5666666654322211 111224578999997555444444444589999986543322232 34567
Q ss_pred EEEEEeCCEEEEEE-cCCeEEEEECCCCcEEEEe
Q 001349 1027 RAMVVSSELVYLGC-KGGTVEIWDQKRQIRIETL 1059 (1094)
Q Consensus 1027 ~~l~~spd~l~sgs-~dg~I~vwd~~t~~~~~~l 1059 (1094)
.++++..+.++.+. ..+.|..+|..+|+....+
T Consensus 249 ~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i 282 (349)
T 3v64_C 249 FAITVFEDSLYWTDWHTKSINSANKFTGKNQEII 282 (349)
T ss_dssp EEEEEETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred eEEEEECCEEEEecCCCCeEEEEEccCCCccEEe
Confidence 88888777655554 5688999997777655555
No 369
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.84 E-value=0.00076 Score=83.27 Aligned_cols=258 Identities=9% Similarity=-0.026 Sum_probs=142.8
Q ss_pred EEEEeC-C--EEEEEECCC-----------eEEEEecCCCcceeEEEecc-cCCCeEEEEEecCCCEEEEEeC-CCcEEE
Q 001349 818 SIACFR-D--KIFSGHSDG-----------TIKVWTGRGSILHLIQQIRE-HTKAVTGLAILQSGEMLYSGSL-DKTARV 881 (1094)
Q Consensus 818 ~l~fsp-d--~LaSgs~Dg-----------~I~vWd~~t~~~~~~~~l~~-H~~~V~sv~fspdg~~LaSgs~-DgtI~v 881 (1094)
++++.+ + +++.|+.++ .+.+||..++.+..+..+.. +.....++++..+|++++.|+. ++.+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 445554 3 667776543 68899999987766655532 3334456788889999999984 568999
Q ss_pred EECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEE-eC-----CeEEEEcCCCCceEEE-------------
Q 001349 882 WSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHL-RN-----GKTKLLNSSKYPKCLA------------- 942 (1094)
Q Consensus 882 Wdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~-~~-----g~i~l~~~~~~v~~l~------------- 942 (1094)
||..+++............-. ..++.++|+.++++. .+ ..+.+|+.........
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~-------s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~ 342 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQ-------SSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADK 342 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSC-------EEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCT
T ss_pred ecCcCCceeECCCCCcccccc-------ceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccc
Confidence 999987644332211111111 223556888888777 33 4567777654332221
Q ss_pred ----EeCCE-EEEEEcC---------CeEEEEECCCCceeEEeccceee----cCCCCCeEEEEEe-CCccEEEEEECCC
Q 001349 943 ----LVQGK-VYCGCQD---------GAIQEIDLATGTFATIQTGHRKL----LGKANPVHALQVH-NGLVYTASTSLDG 1003 (1094)
Q Consensus 943 ----~s~~~-l~sgs~D---------g~I~iwDl~~~~~~~~~~~~~~~----~~h~~~V~sl~fs-~~~~~las~s~Dg 1003 (1094)
..+++ ++.|+.+ ..+..||..++........ ... ......-.++.|. .++.+++.|+.++
T Consensus 343 ~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~-~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~ 421 (656)
T 1k3i_A 343 QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGK-RQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPD 421 (656)
T ss_dssp TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEE-CEETTEECCCCBTCEEEEEETTTTEEEEECCBSS
T ss_pred cceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCc-cccccccCCCCCCCceEeccCCCCeEEEEeCCCC
Confidence 01122 3445444 4567889887765432211 111 0011122445554 3556666665321
Q ss_pred -------C---EEEEEECCCCeEEEEe----cCCCCEEEEEEeCC--EEEEEEcC-----------CeEEEEECCCCcEE
Q 001349 1004 -------A---AVKMWSTSNYNMVGSL----PTLSEVRAMVVSSE--LVYLGCKG-----------GTVEIWDQKRQIRI 1056 (1094)
Q Consensus 1004 -------~---~I~iwd~~~~~~~~~~----~~~~~v~~l~~spd--~l~sgs~d-----------g~I~vwd~~t~~~~ 1056 (1094)
. .|.+||..+..-.... .....-.++++.++ .++.|+.+ ..+.+||..+.+-.
T Consensus 422 ~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~ 501 (656)
T 1k3i_A 422 YQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFY 501 (656)
T ss_dssp SSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEE
T ss_pred CCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCcee
Confidence 1 6788888766543322 22222233344444 66677643 56899998776422
Q ss_pred EEecc--cCCcceEEEEEcCCCCEEEEEeC
Q 001349 1057 ETLQT--GTSGKVQCMALDDNEEFLVIGTS 1084 (1094)
Q Consensus 1057 ~~l~~--~h~~~I~~l~~Spdg~~L~sgs~ 1084 (1094)
.+.. ..........+.|||++++.||.
T Consensus 502 -~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 502 -KQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp -ECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred -ecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 2211 11112234556799999999985
No 370
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.80 E-value=0.00039 Score=82.48 Aligned_cols=297 Identities=13% Similarity=0.181 Sum_probs=184.4
Q ss_pred HHHHHHHHHhhhccccchHhHHHHHHHHHHHHHhccchHHHHhhchhHHHhhhHhhhcc-CCchHHHHHHHHHHHhhccc
Q 001349 266 ITELKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFN-SVDPRVLEATIFLLSELGSR 344 (1094)
Q Consensus 266 ~~~l~~~i~~L~~s~~l~~~e~a~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~v~~L~~-s~~~~v~~~av~~L~~l~s~ 344 (1094)
.+-++....++.++.-+++++.|+..++.++|+-...-. ..-+..++.+|-. ..|.++.+++...|+++...
T Consensus 20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg-------~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~ 92 (651)
T 3grl_A 20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVG-------IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISN 92 (651)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHH-------HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCC
T ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhh-------hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence 455566667777778888899999999998765432111 1123446666666 45778899999999887665
Q ss_pred ccchhhhhccCCCcHHHHHHHHhcChHHHHHHHHhcCCChHHHHHhhhhHHHHHHHHhccccccccccCchhhHHHHHHH
Q 001349 345 DKSVIHTLTRVESDVERIVALFKKGLLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQ 424 (1094)
Q Consensus 345 ~~~~~~~i~~~~~~~~~L~~lLk~g~~~Aa~~l~~L~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~ 424 (1094)
+..--..-. ... ...+-. +...+.=+..-+.++.|+.+|++.+ + ..+-.++.+|..
T Consensus 93 ~~~~~~~~~-~~~-----------~~~~~~-----~~~~d~f~~~~~~i~~Ll~lL~~~d--f-----~vR~~alqlL~~ 148 (651)
T 3grl_A 93 DEEEEVEEN-STR-----------QSEDLG-----SQFTEIFIKQQENVTLLLSLLEEFD--F-----HVRWPGVKLLTS 148 (651)
T ss_dssp C--------------------------CHH-----HHHHHHHHHSTHHHHHHHHHTTCCC--H-----HHHHHHHHHHHH
T ss_pred CCccccccc-ccc-----------cchHHH-----HHHHHHHHcCCccHHHHHHHhcCcc--H-----HHHHHHHHHHHH
Confidence 431100000 000 000000 0000111122344578888886532 2 124456667776
Q ss_pred HhcCCcccccccchhhhc-cchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhcCC--
Q 001349 425 MIGDSEESIVSSIANTIV-SSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASD-- 501 (1094)
Q Consensus 425 l~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~-- 501 (1094)
|+..- -......|. .++||+.|++.|......-|..+..+|......+....+.++-+++.++++.+++....
T Consensus 149 L~~~r----~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~ 224 (651)
T 3grl_A 149 LLKQL----GPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSD 224 (651)
T ss_dssp HHHHS----HHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGG
T ss_pred HHhcC----cHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCc
Confidence 63221 123566666 67999999999998877778888888888999999999999999999999999888543
Q ss_pred c--hhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCC-----ccchhHHH---HHHhhhcccCCC
Q 001349 502 G--ERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANH-----DQCPVVAG---LLLQLDLLAEPR 571 (1094)
Q Consensus 502 ~--~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~-----~~~~~~a~---~l~~l~~~~~~~ 571 (1094)
. .=..|+.+|..|++.|- ...+-+.+.|++.. |..+|+..++ +| -+++ +|-=..+|+.|.
T Consensus 225 Ggivv~DCL~ll~nLLr~N~-----sNQ~~FrEt~~i~~---L~~LL~~~~~~~~W~~Q--k~~N~~~~L~iIrlLv~~~ 294 (651)
T 3grl_A 225 GGIVVEDCLILLQNLLKNNN-----SNQNFFKEGSYIQR---MKPWFEVGDENSGWSAQ--KVTNLHLMLQLVRVLVSPN 294 (651)
T ss_dssp SHHHHHHHHHHHHHHHTTCH-----HHHHHHHHTTCGGG---GGGGGCCCSCSSCCCHH--HHHHHHHHHHHHHHHTCTT
T ss_pred cchhHHHHHHHHHHHHhcCH-----HHHHHHHHcCCHHH---HHHHhCCCccccccHHH--HHHHHHHHHHHHHHHhCCC
Confidence 2 22357899999998843 33445677788877 3344432211 11 3566 444456677774
Q ss_pred CC---------CccHHHHHHHHHHHhhcCCCh-HHHHHHHHHHHhc
Q 001349 572 KM---------SIYREEAIDTLISCLRNSDYP-AAQLAAAKTIVSL 607 (1094)
Q Consensus 572 ~~---------~~~reea~~~~~~~l~~~~~~-~~~~~~~~~~~~l 607 (1094)
.. .+++-+.++.|+..+.....+ .++..|..|+..+
T Consensus 295 ~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~ 340 (651)
T 3grl_A 295 NPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEV 340 (651)
T ss_dssp SCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 32 456677788888877766544 4666666666653
No 371
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.76 E-value=0.0046 Score=68.66 Aligned_cols=227 Identities=11% Similarity=0.044 Sum_probs=133.1
Q ss_pred ccccCcEEEEeeCCCCeEEEeCCcc-eeeccc--------------------CCCcEEEEEEeC-C-EEEEEECCCeEEE
Q 001349 781 LAFEMVKVLSNGHDSSADFWNHREL-VHVDSS--------------------ENGKVLSIACFR-D-KIFSGHSDGTIKV 837 (1094)
Q Consensus 781 ~~~d~~~l~s~s~dg~I~vWd~~~~-~~~~~~--------------------h~~~V~~l~fsp-d-~LaSgs~Dg~I~v 837 (1094)
+..++..++++..++.|..|+.... ...+.. ..+.+..+++.+ + .|+.+...+.|..
T Consensus 26 ~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~~i~~ 105 (322)
T 2fp8_A 26 FDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSV 105 (322)
T ss_dssp CCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETTTEEEE
T ss_pred EcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECCCCEEE
Confidence 4456666777888899999987632 222110 113578999996 4 7777776677888
Q ss_pred EecCCCcceeEEEe-cc-cCCCeEEEEEec-CCCEEEEEeC-----------------CCcEEEEECCCCceEEEEeccc
Q 001349 838 WTGRGSILHLIQQI-RE-HTKAVTGLAILQ-SGEMLYSGSL-----------------DKTARVWSIGNEEIHCVQVHDI 897 (1094)
Q Consensus 838 Wd~~t~~~~~~~~l-~~-H~~~V~sv~fsp-dg~~LaSgs~-----------------DgtI~vWdi~~~~~~~~~~~~~ 897 (1094)
+|..++..+.+... .+ .......+++.+ +|++.++-.. ++.|..||..+++.......
T Consensus 106 ~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-- 183 (322)
T 2fp8_A 106 VGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKE-- 183 (322)
T ss_dssp ECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEE--
T ss_pred EeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccC--
Confidence 99876632222211 11 123578899999 8987776533 36677888776643222110
Q ss_pred CccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEE-EcCCeEEEEECCCCce--eEEeccc
Q 001349 898 KDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCG-CQDGAIQEIDLATGTF--ATIQTGH 974 (1094)
Q Consensus 898 ~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sg-s~Dg~I~iwDl~~~~~--~~~~~~~ 974 (1094)
...+..++++|+|+. ++++ +.++.|..|++..... ...+.
T Consensus 184 -------~~~p~gia~~~dg~~----------------------------lyv~d~~~~~I~~~~~~~~~~~~~~~~~-- 226 (322)
T 2fp8_A 184 -------LHVPGGAEVSADSSF----------------------------VLVAEFLSHQIVKYWLEGPKKGTAEVLV-- 226 (322)
T ss_dssp -------ESCCCEEEECTTSSE----------------------------EEEEEGGGTEEEEEESSSTTTTCEEEEE--
T ss_pred -------CccCcceEECCCCCE----------------------------EEEEeCCCCeEEEEECCCCcCCccceEE--
Confidence 112334457777764 3333 3457788888764211 11111
Q ss_pred eeecCCCCCeEEEEEeCCccEEEEEECC---------CCEEEEEECCCCeEEEEecCC-----CCEEEEEEeCCEEEEEE
Q 001349 975 RKLLGKANPVHALQVHNGLVYTASTSLD---------GAAVKMWSTSNYNMVGSLPTL-----SEVRAMVVSSELVYLGC 1040 (1094)
Q Consensus 975 ~~~~~h~~~V~sl~fs~~~~~las~s~D---------g~~I~iwd~~~~~~~~~~~~~-----~~v~~l~~spd~l~sgs 1040 (1094)
.. .. ...+++++++.+.++.... ++.|..+|. .++.+..+... ..++++++..+.|+.++
T Consensus 227 -~~---~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~ 300 (322)
T 2fp8_A 227 -KI---PN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGT 300 (322)
T ss_dssp -EC---SS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEEETTEEEEEC
T ss_pred -eC---CC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEEeCCEEEEee
Confidence 11 12 6778898887766665430 136888886 47777666522 34667777666666654
Q ss_pred -cCCeEEEEECCC
Q 001349 1041 -KGGTVEIWDQKR 1052 (1094)
Q Consensus 1041 -~dg~I~vwd~~t 1052 (1094)
.++.|.++++..
T Consensus 301 ~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 301 LFHGSVGILVYDK 313 (322)
T ss_dssp SSCSEEEEEEC--
T ss_pred cCCCceEEEeccc
Confidence 567888888753
No 372
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.74 E-value=0.065 Score=59.28 Aligned_cols=222 Identities=9% Similarity=-0.041 Sum_probs=124.0
Q ss_pred CCCeEEEeCCcc-eeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCC---cceeEEEecccCCCeEEEEEecC
Q 001349 794 DSSADFWNHREL-VHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGS---ILHLIQQIREHTKAVTGLAILQS 866 (1094)
Q Consensus 794 dg~I~vWd~~~~-~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~---~~~~~~~l~~H~~~V~sv~fspd 866 (1094)
.+.|+..+.... ..........+.+++|+++ ++++-..++.|..++..+. . .....+...-.....+++.+.
T Consensus 9 ~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~-~~~~~~~~~~~~p~glavd~~ 87 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS-SYDTVISRDIQAPDGLAVDWI 87 (316)
T ss_dssp BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC---------CEEEECSSCSCCCEEEEETT
T ss_pred CCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCc-ccEEEEeCCCCCcCEEEEeec
Confidence 356777887632 2222234567889999973 5555556789999998861 1 112223223345678999875
Q ss_pred CC-EEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC
Q 001349 867 GE-MLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ 945 (1094)
Q Consensus 867 g~-~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~ 945 (1094)
+. +.++-..++.|.+.+.+......+.... ......+ ++.|.+..+
T Consensus 88 ~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~-~~~P~~i-------avdp~~g~l------------------------- 134 (316)
T 1ijq_A 88 HSNIYWTDSVLGTVSVADTKGVKRKTLFREN-GSKPRAI-------VVDPVHGFM------------------------- 134 (316)
T ss_dssp TTEEEEEETTTTEEEEEETTSSSEEEEEECT-TCCEEEE-------EEETTTTEE-------------------------
T ss_pred CCeEEEEECCCCEEEEEeCCCCceEEEEECC-CCCcceE-------EeCCCCCEE-------------------------
Confidence 44 4455566788999998765332222111 1122223 255544433
Q ss_pred CEEEEEEc--CCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEe-c-
Q 001349 946 GKVYCGCQ--DGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSL-P- 1021 (1094)
Q Consensus 946 ~~l~sgs~--Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~-~- 1021 (1094)
+.... .+.|..+++...... .+ ....-...+.+++++++..+..+....+.|..+|+.... ...+ .
T Consensus 135 ---y~~d~~~~~~I~~~~~dG~~~~-~~-----~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~ 204 (316)
T 1ijq_A 135 ---YWTDWGTPAKIKKGGLNGVDIY-SL-----VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILED 204 (316)
T ss_dssp ---EEEECSSSCEEEEEETTSCCEE-EE-----ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEEC
T ss_pred ---EEEccCCCCeEEEEcCCCCCeE-EE-----EECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEeec
Confidence 22222 145666665432221 11 011224578999997655544444444599999986432 2222 2
Q ss_pred --CCCCEEEEEEeCCEEEEE-EcCCeEEEEECCCCcEEEEe
Q 001349 1022 --TLSEVRAMVVSSELVYLG-CKGGTVEIWDQKRQIRIETL 1059 (1094)
Q Consensus 1022 --~~~~v~~l~~spd~l~sg-s~dg~I~vwd~~t~~~~~~l 1059 (1094)
......++++..+.++.. ...+.|..+|..+++.+..+
T Consensus 205 ~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 205 EKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp TTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred CCccCCcEEEEEECCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence 234577888887855554 45689999998777655555
No 373
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.71 E-value=0.0011 Score=70.62 Aligned_cols=150 Identities=9% Similarity=0.039 Sum_probs=106.1
Q ss_pred CCCceEEEEeCCEEEE-EEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCC
Q 001349 935 SKYPKCLALVQGKVYC-GCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSN 1013 (1094)
Q Consensus 935 ~~~v~~l~~s~~~l~s-gs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~ 1013 (1094)
..+...+.|+++.|+. .+.+|.|+.+|+.+++..... .....---.+++..+..|.++. . ++.+.+||..+
T Consensus 54 ~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~------l~~~~FgeGit~~g~~Ly~ltw-~-~~~v~V~D~~T 125 (268)
T 3nok_A 54 NAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME------RLGNIFAEGLASDGERLYQLTW-T-EGLLFTWSGMP 125 (268)
T ss_dssp TCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE------ECTTCCEEEEEECSSCEEEEES-S-SCEEEEEETTT
T ss_pred ccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE------CCCCcceeEEEEeCCEEEEEEc-c-CCEEEEEECCc
Confidence 4556788888887655 455678999999999987432 1111122346777666665533 3 45999999999
Q ss_pred CeEEEEecCCCCEEEEEEeCCEEEEEEcCCeEEEEECCCCcEEEEecccCC----cceEEEEEcCCCCEEEEEeCCCcEE
Q 001349 1014 YNMVGSLPTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTS----GKVQCMALDDNEEFLVIGTSDGRIQ 1089 (1094)
Q Consensus 1014 ~~~~~~~~~~~~v~~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~----~~I~~l~~Spdg~~L~sgs~DG~I~ 1089 (1094)
.+.+.++.....-+.+++....++.+..++.|+++|..+.+.+.++..+-. ..++.+.|. +|+..+..-.++.|.
T Consensus 126 l~~~~ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~ 204 (268)
T 3nok_A 126 PQRERTTRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVL 204 (268)
T ss_dssp TEEEEEEECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEE
T ss_pred CcEEEEEeCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEE
Confidence 999999985555567778888888777899999999999999888854321 145778887 776554444566777
Q ss_pred EEeC
Q 001349 1090 AWGL 1093 (1094)
Q Consensus 1090 iWdl 1093 (1094)
+.|.
T Consensus 205 vIDp 208 (268)
T 3nok_A 205 EIDP 208 (268)
T ss_dssp EECT
T ss_pred EEeC
Confidence 7664
No 374
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.70 E-value=0.0028 Score=66.98 Aligned_cols=153 Identities=10% Similarity=0.123 Sum_probs=106.3
Q ss_pred cCCCCceEEEEeCCEEEEEEcC---CeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEE
Q 001349 933 NSSKYPKCLALVQGKVYCGCQD---GAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMW 1009 (1094)
Q Consensus 933 ~~~~~v~~l~~s~~~l~sgs~D---g~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iw 1009 (1094)
+.......+.|+++.++.++.. ..|+.+|+.+++........ .+ .---.+++..+..|.++ -.+ +.+.+|
T Consensus 18 d~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~----~~-~fgeGi~~~~~~ly~lt-w~~-~~v~v~ 90 (243)
T 3mbr_X 18 DTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVP----PP-YFGAGIVAWRDRLIQLT-WRN-HEGFVY 90 (243)
T ss_dssp CTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECC----TT-CCEEEEEEETTEEEEEE-SSS-SEEEEE
T ss_pred CCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCC----CC-cceeEEEEeCCEEEEEE-eeC-CEEEEE
Confidence 3456677888988887777665 48999999999987543211 11 11234566666655553 334 599999
Q ss_pred ECCCCeEEEEecCCCCEEEEEEeCCEEEEEEcCCeEEEEECCCCcEEEEecccCC----cceEEEEEcCCCCEEEEEeCC
Q 001349 1010 STSNYNMVGSLPTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTS----GKVQCMALDDNEEFLVIGTSD 1085 (1094)
Q Consensus 1010 d~~~~~~~~~~~~~~~v~~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~----~~I~~l~~Spdg~~L~sgs~D 1085 (1094)
|..+.+.+.++.....-..++...+.++.+..++.|.++|..+.+.+.++..+.. ..++.+.|. +|+..+..-.+
T Consensus 91 D~~tl~~~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s 169 (243)
T 3mbr_X 91 DLATLTPRARFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLT 169 (243)
T ss_dssp ETTTTEEEEEEECSSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTT
T ss_pred ECCcCcEEEEEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCC
Confidence 9999999999996555567777777777777789999999999999888864321 245677775 66655444346
Q ss_pred CcEEEEeC
Q 001349 1086 GRIQAWGL 1093 (1094)
Q Consensus 1086 G~I~iWdl 1093 (1094)
..|.+.|.
T Consensus 170 ~~I~vIDp 177 (243)
T 3mbr_X 170 SRIARIDP 177 (243)
T ss_dssp TEEEEECT
T ss_pred CeEEEEEC
Confidence 66766654
No 375
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.66 E-value=0.088 Score=60.37 Aligned_cols=228 Identities=9% Similarity=-0.044 Sum_probs=129.1
Q ss_pred CCCCeEEEeCCcc-eeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCc--ceeEEEecccCCCeEEEEEec-
Q 001349 793 HDSSADFWNHREL-VHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSI--LHLIQQIREHTKAVTGLAILQ- 865 (1094)
Q Consensus 793 ~dg~I~vWd~~~~-~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~--~~~~~~l~~H~~~V~sv~fsp- 865 (1094)
....|+..++... ...+......+..++|++. ++++-...+.|+.+++.+.. ......+.........+++.+
T Consensus 90 ~~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~ 169 (400)
T 3p5b_L 90 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 169 (400)
T ss_dssp ETTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETT
T ss_pred ccceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEec
Confidence 3467777777622 2233344567899999973 45555567899999987621 012233333445678899988
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC
Q 001349 866 SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ 945 (1094)
Q Consensus 866 dg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~ 945 (1094)
.+++.++-...+.|.+.++++.....+.... -.....++ +.|.+..+.+..+.
T Consensus 170 ~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~-~~~P~~ia-------vdp~~g~ly~td~~------------------- 222 (400)
T 3p5b_L 170 HSNIYWTDSVLGTVSVADTKGVKRKTLFREN-GSKPRAIV-------VDPVHGFMYWTDWG------------------- 222 (400)
T ss_dssp TTEEEEEETTTTEEEEECTTTCSEEEEEECS-SCCEEEEE-------EETTTTEEEEEECS-------------------
T ss_pred CCceEEEECCCCeEEEEeCCCCceEEEEeCC-CCCcceEE-------EecccCeEEEEeCC-------------------
Confidence 4555555566788988888765433222111 11122332 55544433222211
Q ss_pred CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec---C
Q 001349 946 GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP---T 1022 (1094)
Q Consensus 946 ~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~---~ 1022 (1094)
..+.|...++........ ....-...+.|++++++..+..+......|..+|+.......... .
T Consensus 223 -------~~~~I~~~~~dG~~~~~~------~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~ 289 (400)
T 3p5b_L 223 -------TPAKIKKGGLNGVDIYSL------VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKR 289 (400)
T ss_dssp -------SSCCEEEEETTSCSCEEE------ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSST
T ss_pred -------CCCEEEEEeCCCCccEEE------EECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCC
Confidence 124566666653332211 111224678899997655555554444589999986543322222 2
Q ss_pred CCCEEEEEEeCCEEE-EEEcCCeEEEEECCCCcEEEEec
Q 001349 1023 LSEVRAMVVSSELVY-LGCKGGTVEIWDQKRQIRIETLQ 1060 (1094)
Q Consensus 1023 ~~~v~~l~~spd~l~-sgs~dg~I~vwd~~t~~~~~~l~ 1060 (1094)
-....++++..+.++ +-...+.|..+|..+|+.+..+.
T Consensus 290 l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 290 LAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp TSSEEEEEEETTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred CCCCEEEEEeCCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 345678888888544 45566889999988887666653
No 376
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.65 E-value=0.0044 Score=77.64 Aligned_cols=195 Identities=11% Similarity=0.044 Sum_probs=110.9
Q ss_pred cEEEEEEe-CC--EEE-EEECCC----eEEEEecCCC-cceeEEEecccCCCeEEEEEecCCCEEEEEeCC-----CcEE
Q 001349 815 KVLSIACF-RD--KIF-SGHSDG----TIKVWTGRGS-ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD-----KTAR 880 (1094)
Q Consensus 815 ~V~~l~fs-pd--~La-Sgs~Dg----~I~vWd~~t~-~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~D-----gtI~ 880 (1094)
.+...+|| || +|+ +.+.+| +|+++|+.++ .. ....+.. ....+.|+|||+.|+..+.| ..|.
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~-l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~ 250 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT-IADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVW 250 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC-CCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe-CCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEE
Confidence 68889999 87 444 334333 5999999987 52 1111211 13468899999888877765 2578
Q ss_pred EEECCCCce--EEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEE
Q 001349 881 VWSIGNEEI--HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQ 958 (1094)
Q Consensus 881 vWdi~~~~~--~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~ 958 (1094)
+|++.++.. ..+...........+ .|+|||+.|++...++ ....|.
T Consensus 251 ~~~lgt~~~~~~lv~~~~~~~~~~~~-------~~SpDg~~l~~~~~~~-------------------------~~~~l~ 298 (751)
T 2xe4_A 251 RHVMGKLQSEDVCLYEEHNPLFSAFM-------YKAADTNTLCIGSQSP-------------------------ETAEVH 298 (751)
T ss_dssp EEETTSCGGGCEEEEECCCTTCEEEE-------EECTTSSEEEEEEECS-------------------------SCEEEE
T ss_pred EEECCCCchhcEEEEecCCCceEEEE-------EECCCCCEEEEEecCC-------------------------CCceEE
Confidence 888877642 122111111222233 3899999876544321 234577
Q ss_pred EEECCCCc--e-eEEeccceeecCCCCCeEEEEEeCCccEEEEEECC---CCEEEEEECCCC-eEEE-EecCCC--CEEE
Q 001349 959 EIDLATGT--F-ATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLD---GAAVKMWSTSNY-NMVG-SLPTLS--EVRA 1028 (1094)
Q Consensus 959 iwDl~~~~--~-~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~D---g~~I~iwd~~~~-~~~~-~~~~~~--~v~~ 1028 (1094)
++|+.++. . .. ...........++.|+.++.+++....+ ...|..+|+.++ .... .+.+.. .+..
T Consensus 299 ~~d~~~~~~~~~~~-----~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~ 373 (751)
T 2xe4_A 299 LLDLRKGNAHNTLE-----IVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMES 373 (751)
T ss_dssp EEESSSCTTCCCEE-----ESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEE
T ss_pred EEECCCCCCCceeE-----EeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEE
Confidence 88887652 2 01 1112234556667766666555555443 136777787652 2222 233333 4567
Q ss_pred EEEeCC-EEEEEEcCCe--EEEEEC
Q 001349 1029 MVVSSE-LVYLGCKGGT--VEIWDQ 1050 (1094)
Q Consensus 1029 l~~spd-~l~sgs~dg~--I~vwd~ 1050 (1094)
+.+..+ ++++...+|. |+++|+
T Consensus 374 ~~~~~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 374 IAVRSNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEECSSEEEEEEEETTEEEEEEEEC
T ss_pred EEEECCEEEEEEEeCCEEEEEEEec
Confidence 777777 4556667775 555665
No 377
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.59 E-value=0.015 Score=64.04 Aligned_cols=225 Identities=9% Similarity=0.063 Sum_probs=121.8
Q ss_pred cccccCcEEEEeeCCCCeEEEeCCcceeecccCCCcEEEEEEeCC--EEEEEEC-CC-eEEEEecCCCcceeEEEecccC
Q 001349 780 PLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD--KIFSGHS-DG-TIKVWTGRGSILHLIQQIREHT 855 (1094)
Q Consensus 780 ~~~~d~~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~fspd--~LaSgs~-Dg-~I~vWd~~t~~~~~~~~l~~H~ 855 (1094)
.+.+++..+++...++.|..||............+.+..+++.++ ++++... ++ .|..+|..++....+..+. ..
T Consensus 38 a~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~-~~ 116 (306)
T 2p4o_A 38 ASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLP-DA 116 (306)
T ss_dssp EECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECT-TC
T ss_pred EECCCCCEEEEeCCCCeEEEECCCCceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCC-Cc
Confidence 445567766666678889889876433322233457899999986 4443333 22 4667787777443333332 22
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEeccc-C--ccceeeeecCceEEEeeCCCeEEEEEeCCeEEEE
Q 001349 856 KAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDI-K--DQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLL 932 (1094)
Q Consensus 856 ~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~-~--~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~ 932 (1094)
.....+++.+++..+++-..++.|.++|..++.......... . .....+. .++. ++++++.+
T Consensus 117 ~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~-~png--is~dg~~l------------ 181 (306)
T 2p4o_A 117 IFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFP-AANG--LKRFGNFL------------ 181 (306)
T ss_dssp SCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSC-SEEE--EEEETTEE------------
T ss_pred cccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCC-cCCC--cCcCCCEE------------
Confidence 334556655555555555568888888887653222111100 0 0000110 0111 14444332
Q ss_pred cCCCCceEEEEeCCEEEEEEcCCeEEEEECCC-CceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEEC
Q 001349 933 NSSKYPKCLALVQGKVYCGCQDGAIQEIDLAT-GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWST 1011 (1094)
Q Consensus 933 ~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~-~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~ 1011 (1094)
+++-...+.|..||+.. +.... ...+. .......+++++++.+.++.... +.|.++|.
T Consensus 182 ---------------yv~d~~~~~I~~~~~~~~g~~~~----~~~~~-~~~~P~gi~vd~dG~l~va~~~~-~~V~~~~~ 240 (306)
T 2p4o_A 182 ---------------YVSNTEKMLLLRIPVDSTDKPGE----PEIFV-EQTNIDDFAFDVEGNLYGATHIY-NSVVRIAP 240 (306)
T ss_dssp ---------------EEEETTTTEEEEEEBCTTSCBCC----CEEEE-ESCCCSSEEEBTTCCEEEECBTT-CCEEEECT
T ss_pred ---------------EEEeCCCCEEEEEEeCCCCCCCc----cEEEe-ccCCCCCeEECCCCCEEEEeCCC-CeEEEECC
Confidence 23334567888888864 32210 01111 01245678899888776665544 48999997
Q ss_pred CCCeEEE--EecC-CCCEEEEEEe---CC--EEEEEEcC
Q 001349 1012 SNYNMVG--SLPT-LSEVRAMVVS---SE--LVYLGCKG 1042 (1094)
Q Consensus 1012 ~~~~~~~--~~~~-~~~v~~l~~s---pd--~l~sgs~d 1042 (1094)
. ++... .+.. ...+++++|. ++ .+++++..
T Consensus 241 ~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 241 D-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp T-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred C-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence 5 55532 3333 3678999998 55 56655543
No 378
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.58 E-value=0.024 Score=65.78 Aligned_cols=235 Identities=10% Similarity=0.095 Sum_probs=129.6
Q ss_pred CcEEEEEEeC-C--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCC-C----cEEEEECC
Q 001349 814 GKVLSIACFR-D--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD-K----TARVWSIG 885 (1094)
Q Consensus 814 ~~V~~l~fsp-d--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~D-g----tI~vWdi~ 885 (1094)
.....++|+| + .|+.+...+.|+.+|..++. +..+.........++|+++|++|+.+... + .+.+.+.
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~---v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~- 212 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY---VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR- 212 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE---EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE---EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-
Confidence 3567889996 2 67666666899999998872 33333355668899999999966666542 2 2222332
Q ss_pred CCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEE-EcCCeEEEEECCC
Q 001349 886 NEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCG-CQDGAIQEIDLAT 964 (1094)
Q Consensus 886 ~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sg-s~Dg~I~iwDl~~ 964 (1094)
.+......... . ...+..+++.|++ +.++++ ..++.|..||..+
T Consensus 213 ~g~~~~~~~l~------~-~~~p~giavdp~~----------------------------g~lyv~d~~~~~V~~~~~~~ 257 (430)
T 3tc9_A 213 ESGFKVITELT------K-GQNCNGAETHPIN----------------------------GELYFNSWNAGQVFRYDFTT 257 (430)
T ss_dssp GGTSCSEEEEE------E-CSSCCCEEECTTT----------------------------CCEEEEETTTTEEEEEETTT
T ss_pred CCceeeeeeec------c-CCCceEEEEeCCC----------------------------CEEEEEECCCCEEEEEECCC
Confidence 22211000000 0 0112223345521 223333 3567888888876
Q ss_pred CceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCC--CeE--EEEecC----------------CC
Q 001349 965 GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSN--YNM--VGSLPT----------------LS 1024 (1094)
Q Consensus 965 ~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~--~~~--~~~~~~----------------~~ 1024 (1094)
+...... . .+.......++|++++.++.......+.|..++... +.. ...+.. -.
T Consensus 258 ~~~~~~~----~-~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~ 332 (430)
T 3tc9_A 258 QETTPLF----T-IQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMH 332 (430)
T ss_dssp TEEEEEE----E-CSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBS
T ss_pred CcEEEEE----E-cCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeC
Confidence 6542211 1 111234678999999985555555556899987653 221 111111 01
Q ss_pred CEE-EEEEe--------CC-EEEEEE-cCCeEEEEECCCCcEEEEecc------c--C--------CcceEEEEEcCC-C
Q 001349 1025 EVR-AMVVS--------SE-LVYLGC-KGGTVEIWDQKRQIRIETLQT------G--T--------SGKVQCMALDDN-E 1076 (1094)
Q Consensus 1025 ~v~-~l~~s--------pd-~l~sgs-~dg~I~vwd~~t~~~~~~l~~------~--h--------~~~I~~l~~Spd-g 1076 (1094)
... .+++. ++ .|+.+. ..+.|+.++ .+|......-. + . -.....++++|+ +
T Consensus 333 ~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g 411 (430)
T 3tc9_A 333 APRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERE 411 (430)
T ss_dssp SEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTT
T ss_pred CCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCC
Confidence 233 56664 23 455554 567899998 45643333211 0 0 115789999995 6
Q ss_pred CEEEEEeCCCcEEEEeC
Q 001349 1077 EFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1077 ~~L~sgs~DG~I~iWdl 1093 (1094)
.++++-..++.|+.+++
T Consensus 412 ~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 412 CFFIGDRENRRIRKIGY 428 (430)
T ss_dssp EEEEEEGGGTEEEEEEE
T ss_pred EEEEEECCCCeEEEEcc
Confidence 55566556778888765
No 379
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.58 E-value=0.058 Score=60.65 Aligned_cols=230 Identities=9% Similarity=-0.010 Sum_probs=125.7
Q ss_pred EEEEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEE-EEeCCCcEEEEECCCCceEEEE
Q 001349 816 VLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLY-SGSLDKTARVWSIGNEEIHCVQ 893 (1094)
Q Consensus 816 V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~La-Sgs~DgtI~vWdi~~~~~~~~~ 893 (1094)
.+|.+..++ +|+.+ ....|+..++.+.. ....+. ....+..++|++.+..|+ +-...+.|..++.+++....+.
T Consensus 36 ~~C~~~~~~~~ll~~-~~~~I~~i~~~g~~--~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~ 111 (349)
T 3v64_C 36 RSCKALGPEPVLLFA-NRIDIRQVLPHRSE--YTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV 111 (349)
T ss_dssp SCEEESSSCCEEEEE-CBSCEEEECTTSCC--EEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred CcccccccCceeEee-cccceEEEeCCCCe--eEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE
Confidence 344444444 33333 33558888887762 333333 344588999997555544 5456788999998876432222
Q ss_pred ecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEecc
Q 001349 894 VHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTG 973 (1094)
Q Consensus 894 ~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~ 973 (1094)
.... ..... +++.+.+..+ +++-...+.|.++++........
T Consensus 112 ~~~~-~~p~g-------lavd~~~g~l---------------------------y~~d~~~~~I~~~~~dG~~~~~l--- 153 (349)
T 3v64_C 112 STGL-ESPGG-------LAVDWVHDKL---------------------------YWTDSGTSRIEVANLDGAHRKVL--- 153 (349)
T ss_dssp CSSC-SCCCE-------EEEETTTTEE---------------------------EEEETTTTEEEEEETTSCSCEEE---
T ss_pred eCCC-CCccE-------EEEecCCCeE---------------------------EEEcCCCCeEEEEcCCCCceEEE---
Confidence 1111 11112 2244333321 22233456777777764432211
Q ss_pred ceeecCCCCCeEEEEEeCCccEEEEEECCC-CEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEE-EcCCeEEEE
Q 001349 974 HRKLLGKANPVHALQVHNGLVYTASTSLDG-AAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLG-CKGGTVEIW 1048 (1094)
Q Consensus 974 ~~~~~~h~~~V~sl~fs~~~~~las~s~Dg-~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sg-s~dg~I~vw 1048 (1094)
....-.....++++|.+..+....... ..|..+++.......... .-.....++++++ .|+.+ +..+.|..+
T Consensus 154 ---~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~ 230 (349)
T 3v64_C 154 ---LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERA 230 (349)
T ss_dssp ---ECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ---EeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEE
Confidence 112234568899997544333333332 488888876433222222 3456889999975 55555 456889999
Q ss_pred ECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1049 DQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1049 d~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
|+........+ ........++++ ..+...++-...+.|..++
T Consensus 231 ~~dG~~~~~~~-~~~~~~P~giav-~~~~ly~td~~~~~V~~~~ 272 (349)
T 3v64_C 231 NLDGSHRKAVI-SQGLPHPFAITV-FEDSLYWTDWHTKSINSAN 272 (349)
T ss_dssp ETTSCSCEEEE-CSSCSSEEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred eCCCCceEEEE-eCCCCCceEEEE-ECCEEEEecCCCCeEEEEE
Confidence 98754433333 233445678888 3455555555567776665
No 380
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.55 E-value=0.042 Score=62.77 Aligned_cols=228 Identities=9% Similarity=-0.009 Sum_probs=126.5
Q ss_pred EEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCCCceEEEEec
Q 001349 818 SIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGE-MLYSGSLDKTARVWSIGNEEIHCVQVH 895 (1094)
Q Consensus 818 ~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~-~LaSgs~DgtI~vWdi~~~~~~~~~~~ 895 (1094)
|.+..++ +|+.+ ....|+.+++.++. ....+ .....+..++|++.+. ++++-...+.|..|+.+++....+...
T Consensus 81 C~~~~~~~~l~~~-~~~~I~~i~~~~~~--~~~~~-~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 156 (386)
T 3v65_B 81 CKALGPEPVLLFA-NRIDIRQVLPHRSE--YTLLL-NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 156 (386)
T ss_dssp EEECSSCCEEEEE-CBSCEEEECTTSCC--CEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS
T ss_pred ECCccccceeEee-cCccceeeccCCCc--EEEEe-cCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC
Confidence 4343344 34333 34678888988763 22223 2345688999997555 444555678899999887643322211
Q ss_pred ccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccce
Q 001349 896 DIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHR 975 (1094)
Q Consensus 896 ~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~ 975 (1094)
.. .. +..+++.+.+..+ +++-...+.|.++++........
T Consensus 157 ~~-~~-------p~glavd~~~g~l---------------------------Y~~d~~~~~I~~~~~dg~~~~~l----- 196 (386)
T 3v65_B 157 GL-ES-------PGGLAVDWVHDKL---------------------------YWTDSGTSRIEVANLDGAHRKVL----- 196 (386)
T ss_dssp SC-SC-------CCCEEEETTTTEE---------------------------EEEETTTTEEEECBTTSCSCEEE-----
T ss_pred CC-CC-------ccEEEEEeCCCeE---------------------------EEEcCCCCeEEEEeCCCCceEEe-----
Confidence 11 11 1222244433322 22223345677777654332211
Q ss_pred eecCCCCCeEEEEEeCCccEEEEEECCC-CEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEE-EcCCeEEEEEC
Q 001349 976 KLLGKANPVHALQVHNGLVYTASTSLDG-AAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLG-CKGGTVEIWDQ 1050 (1094)
Q Consensus 976 ~~~~h~~~V~sl~fs~~~~~las~s~Dg-~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sg-s~dg~I~vwd~ 1050 (1094)
+.........++++|.+.++....... ..|..+++.......... .-.....++++++ .|+.+ +..+.|..+|+
T Consensus 197 -~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~ 275 (386)
T 3v65_B 197 -LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANL 275 (386)
T ss_dssp -ECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECT
T ss_pred -ecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeC
Confidence 112224578899997544443333332 488888876443333222 3456889999965 55554 45688999998
Q ss_pred CCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1051 KRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1051 ~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
........+ ........++++ ..+.++++-...+.|..++
T Consensus 276 dG~~~~~~~-~~~~~~P~giav-~~~~ly~td~~~~~V~~~~ 315 (386)
T 3v65_B 276 DGSHRKAVI-SQGLPHPFAITV-FEDSLYWTDWHTKSINSAN 315 (386)
T ss_dssp TSCSCEEEE-CSSCSSEEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred CCCeeEEEE-ECCCCCceEEEE-ECCEEEEeeCCCCeEEEEE
Confidence 754433333 233445678888 3455556666677777765
No 381
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.49 E-value=0.043 Score=63.73 Aligned_cols=235 Identities=11% Similarity=0.065 Sum_probs=129.9
Q ss_pred CcEEEEEEeC----CEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCC---Cc-EEEEECC
Q 001349 814 GKVLSIACFR----DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD---KT-ARVWSIG 885 (1094)
Q Consensus 814 ~~V~~l~fsp----d~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~D---gt-I~vWdi~ 885 (1094)
.....++|++ ..|+.+...+.|+.+|..++ .+..+.........++|+++|+++++-... .. +...+..
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g---~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~ 215 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQ---YVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRA 215 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTT---EEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGG
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCC---EEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECC
Confidence 3467899997 36666665589999999887 233444455668999999999944443321 11 2222221
Q ss_pred CCceEEEEecccCccceeeeecCceEEEee-CCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEE-cCCeEEEEECC
Q 001349 886 NEEIHCVQVHDIKDQIQNLAVSNSILCFIP-QGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGC-QDGAIQEIDLA 963 (1094)
Q Consensus 886 ~~~~~~~~~~~~~~~V~~v~~~~~~~~fsp-dg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs-~Dg~I~iwDl~ 963 (1094)
.+.... . .......+..+++.| +| .|+++. .++.|+.+|..
T Consensus 216 ~~~~~~-~-------~~~~~~~P~giavd~~~G-----------------------------~lyv~d~~~~~V~~~d~~ 258 (433)
T 4hw6_A 216 SGFTER-L-------SLCNARGAKTCAVHPQNG-----------------------------KIYYTRYHHAMISSYDPA 258 (433)
T ss_dssp GTTCCE-E-------EEEECSSBCCCEECTTTC-----------------------------CEEECBTTCSEEEEECTT
T ss_pred CCeecc-c-------cccccCCCCEEEEeCCCC-----------------------------eEEEEECCCCEEEEEECC
Confidence 110000 0 000001122233444 22 244333 45678888887
Q ss_pred CCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECC--CCeE--EEEecC----------------C
Q 001349 964 TGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTS--NYNM--VGSLPT----------------L 1023 (1094)
Q Consensus 964 ~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~--~~~~--~~~~~~----------------~ 1023 (1094)
++....... . .+....-..++|++++.++..+....+.|..++.. ++.. ...+.. -
T Consensus 259 ~g~~~~~~~---~-~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~ 334 (433)
T 4hw6_A 259 TGTLTEEEV---M-MDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARL 334 (433)
T ss_dssp TCCEEEEEE---E-CSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBC
T ss_pred CCeEEEEEe---c-cCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEE
Confidence 776522111 0 11112334799999988555555555699998865 2321 111111 1
Q ss_pred CCEEEEEE---------eCC-EEEEEE-cCCeEEEEECCCCcEEEEecccC----------------CcceEEEEEc-CC
Q 001349 1024 SEVRAMVV---------SSE-LVYLGC-KGGTVEIWDQKRQIRIETLQTGT----------------SGKVQCMALD-DN 1075 (1094)
Q Consensus 1024 ~~v~~l~~---------spd-~l~sgs-~dg~I~vwd~~t~~~~~~l~~~h----------------~~~I~~l~~S-pd 1075 (1094)
.....+++ .++ .|+.+. ..+.|+.++. +|......-.+. -.....|+++ ++
T Consensus 335 ~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~ 413 (433)
T 4hw6_A 335 WGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKR 413 (433)
T ss_dssp SSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTT
T ss_pred cCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCC
Confidence 24677898 555 455554 5678999985 554333221111 1247899999 67
Q ss_pred CCEEEEEeCCCcEEEEeC
Q 001349 1076 EEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1076 g~~L~sgs~DG~I~iWdl 1093 (1094)
|.++++=..+++|+.+++
T Consensus 414 g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 414 KCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp TEEEEEEGGGTEEEEEEE
T ss_pred CEEEEEeCCCCEEEEEec
Confidence 766666666788888775
No 382
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.45 E-value=0.071 Score=59.25 Aligned_cols=231 Identities=10% Similarity=-0.017 Sum_probs=121.2
Q ss_pred CCcEEEEEEeCCEEEEEECCCeEEEEecCCC-cceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc-eE
Q 001349 813 NGKVLSIACFRDKIFSGHSDGTIKVWTGRGS-ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE-IH 890 (1094)
Q Consensus 813 ~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~-~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~-~~ 890 (1094)
...+.+|.|.++.++.++.+|.|..- .+.+ .++.+.....+.+.+..+.+.+++..++.+ .+|.|.. ..+.|+ ..
T Consensus 79 ~~~~~~i~~~~~~~~~~g~~g~i~~S-~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~ 155 (327)
T 2xbg_A 79 DYRFNSVSFQGNEGWIVGEPPIMLHT-TDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQ 155 (327)
T ss_dssp CCEEEEEEEETTEEEEEEETTEEEEE-SSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEE
T ss_pred CccEEEEEecCCeEEEEECCCeEEEE-CCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCE
Confidence 45789999998755556667766543 2223 223322222244567888888777666655 4564422 223332 22
Q ss_pred EEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEE
Q 001349 891 CVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATI 970 (1094)
Q Consensus 891 ~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~ 970 (1094)
... ......+..+. +.+++. ++..+.+|.+..-+-..+..-..
T Consensus 156 ~~~-~~~~~~~~~~~-------~~~~~~-----------------------------~~~~g~~G~~~~S~d~gG~tW~~ 198 (327)
T 2xbg_A 156 ALV-QEAIGVMRNLN-------RSPSGE-----------------------------YVAVSSRGSFYSTWEPGQTAWEP 198 (327)
T ss_dssp EEE-CSCCCCEEEEE-------ECTTSC-----------------------------EEEEETTSSEEEEECTTCSSCEE
T ss_pred Eee-cCCCcceEEEE-------EcCCCc-----------------------------EEEEECCCcEEEEeCCCCCceeE
Confidence 221 12222333333 444444 33333444433322111221111
Q ss_pred eccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-----CCCCEEEEEEeCC-EEEEEEcCCe
Q 001349 971 QTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-----TLSEVRAMVVSSE-LVYLGCKGGT 1044 (1094)
Q Consensus 971 ~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-----~~~~v~~l~~spd-~l~sgs~dg~ 1044 (1094)
. -......+..+.+.+++.+.+.+ .+| .+.+++...++.-..+. ....+..+.+.++ .+++++.+|.
T Consensus 199 ~-----~~~~~~~~~~~~~~~~g~~~~~~-~~G-~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~ 271 (327)
T 2xbg_A 199 H-----NRTTSRRLHNMGFTPDGRLWMIV-NGG-KIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGA 271 (327)
T ss_dssp E-----ECCSSSCEEEEEECTTSCEEEEE-TTT-EEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTC
T ss_pred C-----CCCCCCccceeEECCCCCEEEEe-CCc-eEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCe
Confidence 0 11234578888888887765544 444 67666433233322222 2235888888865 5555566777
Q ss_pred EEEEECCCCcEEEEeccc--CCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1045 VEIWDQKRQIRIETLQTG--TSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1045 I~vwd~~t~~~~~~l~~~--h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
| .+..+.|+.-..+..+ +...+.++.|.+++ .+++++.+|+|.-++
T Consensus 272 i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 272 L-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYV 319 (327)
T ss_dssp E-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEEC
T ss_pred E-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEc
Confidence 7 4555556555544322 23567889897554 566777899887664
No 383
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.40 E-value=0.12 Score=55.05 Aligned_cols=213 Identities=10% Similarity=0.066 Sum_probs=122.4
Q ss_pred ecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcceeEEEec-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 001349 808 VDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIR-EHTKAVTGLAILQSGEMLYSGSLDKTARVWS 883 (1094)
Q Consensus 808 ~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~~~~l~-~H~~~V~sv~fspdg~~LaSgs~DgtI~vWd 883 (1094)
.+.+-.+.+..++|+|+ ++++...++.|...|.. + +.++.+. +-....-.|++.+++.++++.-.++.+.+++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g--~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~ 97 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-G--DLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVIS 97 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-C--CEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-C--CEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEE
Confidence 44566678999999984 55567789999999998 5 4555542 2225678899998888777766778899998
Q ss_pred CCCCce-EEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEEC
Q 001349 884 IGNEEI-HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDL 962 (1094)
Q Consensus 884 i~~~~~-~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl 962 (1094)
+..... .........-....-...-..++|.|+++ .++++.......+|.+
T Consensus 98 v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~----------------------------~L~va~E~~p~~i~~~ 149 (255)
T 3qqz_A 98 LTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDH----------------------------TFWFFKEKNPIEVYKV 149 (255)
T ss_dssp ECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTT----------------------------EEEEEEESSSEEEEEE
T ss_pred cCCCCeeeeeeeeccccccccccCCcceEEEeCCCC----------------------------EEEEEECcCCceEEEE
Confidence 876431 11111110000000000001222444443 3444444433333333
Q ss_pred C---CCceeEEeccce-eecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecC--C--------CCEEE
Q 001349 963 A---TGTFATIQTGHR-KLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT--L--------SEVRA 1028 (1094)
Q Consensus 963 ~---~~~~~~~~~~~~-~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~--~--------~~v~~ 1028 (1094)
. .+.......... .-..+...+.+++++|....+...+..++.+.++|.. |+.+..+.- + .....
T Consensus 150 ~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEG 228 (255)
T 3qqz_A 150 NGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEG 228 (255)
T ss_dssp ESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEE
T ss_pred cccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCe
Confidence 2 111111111000 0011234578999998765555566666799999975 556665551 1 36789
Q ss_pred EEEeCC-EEEEEEcCCeEEEEECCC
Q 001349 1029 MVVSSE-LVYLGCKGGTVEIWDQKR 1052 (1094)
Q Consensus 1029 l~~spd-~l~sgs~dg~I~vwd~~t 1052 (1094)
|+|+++ .+++.++.+.+++|....
T Consensus 229 ia~d~~G~lyIvsE~n~~y~f~~~~ 253 (255)
T 3qqz_A 229 VAMDASGNIYIVSEPNRFYRFTPQS 253 (255)
T ss_dssp EEECTTCCEEEEETTTEEEEEEC--
T ss_pred eEECCCCCEEEEcCCceEEEEEecC
Confidence 999998 677778888888886543
No 384
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.39 E-value=0.11 Score=57.39 Aligned_cols=223 Identities=9% Similarity=0.006 Sum_probs=126.1
Q ss_pred CCCeEEEeCCcc---eeecccCCCcEEEEEEeC--C-EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecC-
Q 001349 794 DSSADFWNHREL---VHVDSSENGKVLSIACFR--D-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS- 866 (1094)
Q Consensus 794 dg~I~vWd~~~~---~~~~~~h~~~V~~l~fsp--d-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspd- 866 (1094)
...|+.+++... .......-..+.+++|.+ + ++++-...+.|..++..++.. ....+...-.....+++.+.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~-~~~~~~~~l~~p~glavd~~~ 90 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES-VQNVVVSGLLSPDGLACDWLG 90 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSC-CCEEEEECCSCCCEEEEETTT
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCc-eEEEEcCCCCCccEEEEEcCC
Confidence 456777777632 122222234567899987 3 555666778999999887621 11122222345678899874
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCC
Q 001349 867 GEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQG 946 (1094)
Q Consensus 867 g~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~ 946 (1094)
+.+.++-...+.|.+++.+......+.... ......+ ++.|.+..
T Consensus 91 g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~-~~~P~gi-------avdp~~g~--------------------------- 135 (318)
T 3sov_A 91 EKLYWTDSETNRIEVSNLDGSLRKVLFWQE-LDQPRAI-------ALDPSSGF--------------------------- 135 (318)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSS-CSSEEEE-------EEEGGGTE---------------------------
T ss_pred CeEEEEECCCCEEEEEECCCCcEEEEEeCC-CCCccEE-------EEeCCCCE---------------------------
Confidence 555555566788999998765322222111 1112222 25554433
Q ss_pred EEEEEE--cCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CC
Q 001349 947 KVYCGC--QDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TL 1023 (1094)
Q Consensus 947 ~l~sgs--~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~ 1023 (1094)
++... ..+.|..+++......... ...-...+.+++++++..+..+....+.|..+|+.......... ..
T Consensus 136 -ly~td~~~~~~I~r~~~dG~~~~~~~------~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~ 208 (318)
T 3sov_A 136 -MYWTDWGEVPKIERAGMDGSSRFIII------NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSL 208 (318)
T ss_dssp -EEEEECSSSCEEEEEETTSCSCEEEE------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCC
T ss_pred -EEEEecCCCCEEEEEEcCCCCeEEEE------ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCC
Confidence 33332 1355666665432221111 11124568999997555444444444599999986433222222 34
Q ss_pred CCEEEEEEeCCEEE-EEEcCCeEEEEECCCCcEEEEe
Q 001349 1024 SEVRAMVVSSELVY-LGCKGGTVEIWDQKRQIRIETL 1059 (1094)
Q Consensus 1024 ~~v~~l~~spd~l~-sgs~dg~I~vwd~~t~~~~~~l 1059 (1094)
....++++..+.++ +-...+.|..+|..+|+....+
T Consensus 209 ~~P~glav~~~~lywtd~~~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 209 PHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREI 245 (318)
T ss_dssp SCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CCceEEEEeCCEEEEEecCCCeEEEEECCCCCceEEE
Confidence 56778888888544 4446789999999877655554
No 385
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.32 E-value=0.00014 Score=63.68 Aligned_cols=46 Identities=9% Similarity=0.112 Sum_probs=39.5
Q ss_pred eccCccccccCcE-EcCCcccccHHhHHHHHHhCCCCCCCCCcCCCC
Q 001349 165 VCPITTHIFDDPV-TLETGQTYERRAIQEWIERGNSSCPITRQKLSS 210 (1094)
Q Consensus 165 ~CpIc~~~~~dPv-~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~ 210 (1094)
.|++|.-.+..-. ++||+|.||..|+..|..++...||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 4899998888654 579999999999999998878899999987653
No 386
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.32 E-value=0.31 Score=53.73 Aligned_cols=212 Identities=12% Similarity=0.011 Sum_probs=116.6
Q ss_pred CeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEE-EEEeCCCcEEEEECCCC----ceEEEEecccCccceeeeec
Q 001349 833 GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEML-YSGSLDKTARVWSIGNE----EIHCVQVHDIKDQIQNLAVS 907 (1094)
Q Consensus 833 g~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~L-aSgs~DgtI~vWdi~~~----~~~~~~~~~~~~~V~~v~~~ 907 (1094)
..|+..|+.+.. ....+. ....+..++|++++..| ++-..++.|..++..+. ....+. ...-.....
T Consensus 10 ~~I~~i~~~~~~--~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~-~~~~~~p~g---- 81 (316)
T 1ijq_A 10 HEVRKMTLDRSE--YTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-SRDIQAPDG---- 81 (316)
T ss_dssp SSEEEEETTSCC--CEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE-CSSCSCCCE----
T ss_pred CeEEEEECCCcc--eEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEE-eCCCCCcCE----
Confidence 568889998873 333333 45567899999865544 45455688998888762 111110 000001111
Q ss_pred CceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEE-EcCCeEEEEECCCCceeEEeccceeecCCCCCeEE
Q 001349 908 NSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCG-CQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHA 986 (1094)
Q Consensus 908 ~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sg-s~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~s 986 (1094)
+++.+.+ +.++.. ..++.|.++|+......... .........
T Consensus 82 ---lavd~~~----------------------------~~ly~~d~~~~~I~~~~~~g~~~~~~~------~~~~~~P~~ 124 (316)
T 1ijq_A 82 ---LAVDWIH----------------------------SNIYWTDSVLGTVSVADTKGVKRKTLF------RENGSKPRA 124 (316)
T ss_dssp ---EEEETTT----------------------------TEEEEEETTTTEEEEEETTSSSEEEEE------ECTTCCEEE
T ss_pred ---EEEeecC----------------------------CeEEEEECCCCEEEEEeCCCCceEEEE------ECCCCCcce
Confidence 1233222 234333 45677888887654332211 112245788
Q ss_pred EEEeCCccEEEEEECCC-CEEEEEECCCCeEEEEec--CCCCEEEEEEeCC--EEEEEE-cCCeEEEEECCCCcEEEEec
Q 001349 987 LQVHNGLVYTASTSLDG-AAVKMWSTSNYNMVGSLP--TLSEVRAMVVSSE--LVYLGC-KGGTVEIWDQKRQIRIETLQ 1060 (1094)
Q Consensus 987 l~fs~~~~~las~s~Dg-~~I~iwd~~~~~~~~~~~--~~~~v~~l~~spd--~l~sgs-~dg~I~vwd~~t~~~~~~l~ 1060 (1094)
++++|.+..+..+.... ..|..+++.. .....+. .-.....++++++ .++.+. ..+.|..+|...... ..+.
T Consensus 125 iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~-~~~~ 202 (316)
T 1ijq_A 125 IVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTIL 202 (316)
T ss_dssp EEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE
T ss_pred EEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce-EEEe
Confidence 99997444333333322 4788888753 3333332 3456889999975 555554 567999999875332 2221
Q ss_pred c--cCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1061 T--GTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1061 ~--~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
. .......++++. .+.++++-...+.|..++
T Consensus 203 ~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~ 235 (316)
T 1ijq_A 203 EDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSAN 235 (316)
T ss_dssp ECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred ecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEe
Confidence 1 122346788885 355555665667787776
No 387
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.22 E-value=0.38 Score=62.60 Aligned_cols=297 Identities=9% Similarity=0.016 Sum_probs=154.5
Q ss_pred CcEEEEeeCCCCeEEEeCCc--cee-ecccCCCcEEEEEEeC--------CEEEEEEC-CCeEEEEecCCCcceeEEEec
Q 001349 785 MVKVLSNGHDSSADFWNHRE--LVH-VDSSENGKVLSIACFR--------DKIFSGHS-DGTIKVWTGRGSILHLIQQIR 852 (1094)
Q Consensus 785 ~~~l~s~s~dg~I~vWd~~~--~~~-~~~~h~~~V~~l~fsp--------d~LaSgs~-Dg~I~vWd~~t~~~~~~~~l~ 852 (1094)
+..++.+. .+.+.+++... ... ....-.+.|.|+++.+ ++++.|.. |++|+|+++.+........+.
T Consensus 523 ~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~ 601 (1158)
T 3ei3_A 523 SSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLG 601 (1158)
T ss_dssp SSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECC
T ss_pred CCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECC
Confidence 44565554 56677766541 111 1112256899999874 38999997 999999999875322223332
Q ss_pred ccCCCeEEEEEec--CCCEEEEEeCCCcEEEEEC--CCCceEEEEecc-cCccceeeeec--CceEEEee-CCCeEEEEE
Q 001349 853 EHTKAVTGLAILQ--SGEMLYSGSLDKTARVWSI--GNEEIHCVQVHD-IKDQIQNLAVS--NSILCFIP-QGAGIKVHL 924 (1094)
Q Consensus 853 ~H~~~V~sv~fsp--dg~~LaSgs~DgtI~vWdi--~~~~~~~~~~~~-~~~~V~~v~~~--~~~~~fsp-dg~~l~~~~ 924 (1094)
+ .....++.+.. ...+|..|-.||.+.-+.+ .+|++.-..... ...++.-..+. +....|.. +..++. ..
T Consensus 602 ~-~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~li-y~ 679 (1158)
T 3ei3_A 602 G-EIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVI-YS 679 (1158)
T ss_dssp S-SCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEE-EE
T ss_pred C-CCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEE-EE
Confidence 1 22344554432 3457889999998765544 455433221111 12232222111 11111222 112222 22
Q ss_pred eCCeEEEEcCC-CCceEE-EEe----CCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEE
Q 001349 925 RNGKTKLLNSS-KYPKCL-ALV----QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTAS 998 (1094)
Q Consensus 925 ~~g~i~l~~~~-~~v~~l-~~s----~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las 998 (1094)
.++.+.+-... ..+..+ .|+ ++.++..+ ++.+++..+..-..... +++ .-...+..++++|+...++.
T Consensus 680 ~~~~l~~s~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~----~~i-pL~~Tprri~y~~~~~~~~v 753 (1158)
T 3ei3_A 680 SNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHI----RTV-PLYESPRKICYQEVSQCFGV 753 (1158)
T ss_dssp SSSSEEEEEBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEE----EEE-ECSSEEEEEEEEGGGTEEEE
T ss_pred cCCceEEeccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeE----EEE-eCCCCceEEEEcCCCCEEEE
Confidence 23333322221 122222 332 34455443 55688887754322211 111 11235566666654433222
Q ss_pred EE-C-----------------------------------------------CCCEEEEEECCCCeEEEEec--CCCCEEE
Q 001349 999 TS-L-----------------------------------------------DGAAVKMWSTSNYNMVGSLP--TLSEVRA 1028 (1094)
Q Consensus 999 ~s-~-----------------------------------------------Dg~~I~iwd~~~~~~~~~~~--~~~~v~~ 1028 (1094)
+. . ..+.|++.|..+++.+..+. ....+.+
T Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~s 833 (1158)
T 3ei3_A 754 LSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALS 833 (1158)
T ss_dssp EEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEE
T ss_pred EEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEE
Confidence 11 0 01268888888888777666 3444555
Q ss_pred EEE---eC---CEEEEEE----------cCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1029 MVV---SS---ELVYLGC----------KGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1029 l~~---sp---d~l~sgs----------~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
++. .. .++++|+ ..|.|++|++..++.....+....+.|++++-- +|+ |++|- ..+|++|+
T Consensus 834 v~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~-Lla~i-g~~l~vy~ 910 (1158)
T 3ei3_A 834 LVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGK-LLASI-NSTVRLYE 910 (1158)
T ss_dssp EEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTE-EEEEE-TTEEEEEE
T ss_pred EEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCE-EEEEc-CCEEEEEE
Confidence 554 22 3888886 348899999876554443333456789988743 454 44443 46899998
Q ss_pred C
Q 001349 1093 L 1093 (1094)
Q Consensus 1093 l 1093 (1094)
+
T Consensus 911 l 911 (1158)
T 3ei3_A 911 W 911 (1158)
T ss_dssp E
T ss_pred C
Confidence 6
No 388
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.16 E-value=0.39 Score=59.94 Aligned_cols=227 Identities=9% Similarity=-0.054 Sum_probs=126.7
Q ss_pred CCCCeEEEeCCc-ceeecccCCCcEEEEEEeC--C-EEEEEECCCeEEEEecCCCcc--eeEEEecccCCCeEEEEEecC
Q 001349 793 HDSSADFWNHRE-LVHVDSSENGKVLSIACFR--D-KIFSGHSDGTIKVWTGRGSIL--HLIQQIREHTKAVTGLAILQS 866 (1094)
Q Consensus 793 ~dg~I~vWd~~~-~~~~~~~h~~~V~~l~fsp--d-~LaSgs~Dg~I~vWd~~t~~~--~~~~~l~~H~~~V~sv~fspd 866 (1094)
....|+..++.. ....+......+.+++|.+ + ++++-...+.|+.+++.+... .....+.........|++.+.
T Consensus 402 n~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~ 481 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 481 (791)
T ss_dssp CBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred cccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeec
Confidence 345566666652 2222333456788999987 3 555556678899999875310 122333334456778999886
Q ss_pred CC-EEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC
Q 001349 867 GE-MLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ 945 (1094)
Q Consensus 867 g~-~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~ 945 (1094)
+. +.++-...+.|.+.+++......+.... -.....|+ +.|.+..|.+..+.
T Consensus 482 ~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~-l~~P~gIa-------VDp~~g~LYwtD~g------------------- 534 (791)
T 3m0c_C 482 HSNIYWTDSVLGTVSVADTKGVKRKTLFREN-GSKPRAIV-------VDPVHGFMYWTDWG------------------- 534 (791)
T ss_dssp TTEEEEEETTTTEEEEEETTSSSEEEEEECT-TCCEEEEE-------EETTTTEEEEEECS-------------------
T ss_pred CCcEEEEecCCCeEEEEeCCCCeEEEEEeCC-CCCcceEE-------EecCCCCEEEecCC-------------------
Confidence 65 4445556788999998865433322211 11222333 55544433222211
Q ss_pred CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecC---
Q 001349 946 GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT--- 1022 (1094)
Q Consensus 946 ~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~--- 1022 (1094)
..+.|...++........ +...-...+.|++++....+..+......|..+|+........+..
T Consensus 535 -------~~~~I~~~~~dG~~~~~l------v~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~ 601 (791)
T 3m0c_C 535 -------TPAKIKKGGLNGVDIYSL------VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKR 601 (791)
T ss_dssp -------SSCEEEEEETTSCCEEEE------ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTT
T ss_pred -------CCCeEEEEecCCCceEEE------EeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCc
Confidence 124566666653332211 1112246788999865444444444445899999865443333332
Q ss_pred CCCEEEEEEeCCEEEEEE-cCCeEEEEECCCCcEEEEe
Q 001349 1023 LSEVRAMVVSSELVYLGC-KGGTVEIWDQKRQIRIETL 1059 (1094)
Q Consensus 1023 ~~~v~~l~~spd~l~sgs-~dg~I~vwd~~t~~~~~~l 1059 (1094)
-....+|++..+.|+... ..+.|...|..+|+.+..+
T Consensus 602 l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 602 LAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp TSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred cCCCCEEEEeCCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 235678888888666655 5688999998887665555
No 389
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.15 E-value=0.27 Score=52.38 Aligned_cols=205 Identities=13% Similarity=0.092 Sum_probs=111.0
Q ss_pred EEecccCCCeEEEEEecCCCEEE-EEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCC
Q 001349 849 QQIREHTKAVTGLAILQSGEMLY-SGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNG 927 (1094)
Q Consensus 849 ~~l~~H~~~V~sv~fspdg~~La-Sgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g 927 (1094)
+.+.+-.+.+..++|+|+++.|+ +...++.|...|.. ++...............++ +.++|.+++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa-------~~~~g~~~v------ 85 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIE-------YIGDNQFVI------ 85 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEE-------ECSTTEEEE------
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeE-------EeCCCEEEE------
Confidence 35666677899999999766555 46678888888987 5422221111112233333 444443221
Q ss_pred eEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccce-ee--cCCCCCeEEEEEeCCccEEEEEECCC-
Q 001349 928 KTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHR-KL--LGKANPVHALQVHNGLVYTASTSLDG- 1003 (1094)
Q Consensus 928 ~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~-~~--~~h~~~V~sl~fs~~~~~las~s~Dg- 1003 (1094)
+.-.++.+.++++.....+....... .+ .........++|++.+..+..+...+
T Consensus 86 ----------------------s~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p 143 (255)
T 3qqz_A 86 ----------------------SDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNP 143 (255)
T ss_dssp ----------------------EETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSS
T ss_pred ----------------------EECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCC
Confidence 22233455555544333211100000 01 12345678999998774444443332
Q ss_pred CEEEEEECC-CCeEEEEec--------CCCCEEEEEEeCC---EEEEEEcCCeEEEEECCCCcEEEEec--ccCC-----
Q 001349 1004 AAVKMWSTS-NYNMVGSLP--------TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIRIETLQ--TGTS----- 1064 (1094)
Q Consensus 1004 ~~I~iwd~~-~~~~~~~~~--------~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~~~~~~l~--~~h~----- 1064 (1094)
..|..|+-. ....+..+. .-..+.+++++|. +++....+..+.++|.. |+.+..+. .+..
T Consensus 144 ~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~ 222 (255)
T 3qqz_A 144 IEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHN 222 (255)
T ss_dssp EEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSC
T ss_pred ceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccc
Confidence 245555510 111111111 2245789999987 56666677889999976 44555442 1211
Q ss_pred -cceEEEEEcCCCCEEEEEeCCCcEEEE
Q 001349 1065 -GKVQCMALDDNEEFLVIGTSDGRIQAW 1091 (1094)
Q Consensus 1065 -~~I~~l~~Spdg~~L~sgs~DG~I~iW 1091 (1094)
...-.|+|.++|+ |+..++-+.++.|
T Consensus 223 ~~qpEGia~d~~G~-lyIvsE~n~~y~f 249 (255)
T 3qqz_A 223 IKQAEGVAMDASGN-IYIVSEPNRFYRF 249 (255)
T ss_dssp CCSEEEEEECTTCC-EEEEETTTEEEEE
T ss_pred cCCCCeeEECCCCC-EEEEcCCceEEEE
Confidence 2568999999998 4445777666555
No 390
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.12 E-value=0.096 Score=58.14 Aligned_cols=194 Identities=11% Similarity=0.201 Sum_probs=115.9
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC
Q 001349 866 SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ 945 (1094)
Q Consensus 866 dg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~ 945 (1094)
...+++....++-+.+||+....+ ..... ..++.+...+. |.-.|+.+-
T Consensus 39 ~~s~ii~t~k~~gL~Vydl~G~~l---~~~~~-g~~nnVD~r~~---~~l~g~~~d------------------------ 87 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSLDGKML---HSYNT-GKLNNVDIRYD---FPLNGKKVD------------------------ 87 (355)
T ss_dssp GGCEEEEEETTTEEEEEETTSCEE---EEECC-SCEEEEEEEEE---EEETTEEEE------------------------
T ss_pred CccEEEEEcCCCCEEEEcCCCcEE---EEccC-CCcccEEEecc---cccCCceEe------------------------
Confidence 345677777778899999954322 22221 45556553221 222222110
Q ss_pred CEEEEEE-c--CCeEEEEEC--CCCceeEEeccc-eeecCCCCCeEEEEE--eC-Cc-cEEEEEECCCCEEEEEECC---
Q 001349 946 GKVYCGC-Q--DGAIQEIDL--ATGTFATIQTGH-RKLLGKANPVHALQV--HN-GL-VYTASTSLDGAAVKMWSTS--- 1012 (1094)
Q Consensus 946 ~~l~sgs-~--Dg~I~iwDl--~~~~~~~~~~~~-~~~~~h~~~V~sl~f--s~-~~-~~las~s~Dg~~I~iwd~~--- 1012 (1094)
.+++.. . +++|.+|++ .++... ..... ..+..-...+..+++ ++ .+ .++.....+| .+..|++.
T Consensus 88 -la~as~R~~~~n~l~vf~iDp~~~~l~-~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G-~~~q~~l~~~~ 164 (355)
T 3amr_A 88 -IAAASNRSEGKNTIEIYAIDGKNGTLQ-SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEG-EFEQYELKADK 164 (355)
T ss_dssp -EEEEEECSTTCCEEEEEEECTTTCCEE-ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSS-EEEEEEEEECT
T ss_pred -EEEEeCCCCCCCeEEEEEECCCCCcee-eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCC-eEEEEEEEeCC
Confidence 122333 3 578999966 444422 21100 001011145666777 55 34 3666666675 89998882
Q ss_pred ----CCeEEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECC-----CCcEEEEecccCC-cceEEEEE--cCCCC-
Q 001349 1013 ----NYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQK-----RQIRIETLQTGTS-GKVQCMAL--DDNEE- 1077 (1094)
Q Consensus 1013 ----~~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~-----t~~~~~~l~~~h~-~~I~~l~~--Spdg~- 1077 (1094)
+++.+++|...+.+..+.+++. .|+.+-++.-|..|+.. +++.+..+..++- ..+..|++ .++++
T Consensus 165 ~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~g 244 (355)
T 3amr_A 165 NGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKG 244 (355)
T ss_dssp TSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCE
T ss_pred CCcccceEEEEecCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCE
Confidence 3467888888888999999976 89999999777777754 3556666533333 36888888 45665
Q ss_pred EEEEEe-CCCcEEEEeC
Q 001349 1078 FLVIGT-SDGRIQAWGL 1093 (1094)
Q Consensus 1078 ~L~sgs-~DG~I~iWdl 1093 (1094)
+|++++ .+++..+||.
T Consensus 245 yLivSsQG~~s~~Vydr 261 (355)
T 3amr_A 245 YLMASSQGNSSYAIYDR 261 (355)
T ss_dssp EEEEEEGGGTEEEEEES
T ss_pred EEEEEcCCCCEEEEEEC
Confidence 666665 5678999886
No 391
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.10 E-value=0.013 Score=73.48 Aligned_cols=196 Identities=9% Similarity=0.033 Sum_probs=108.6
Q ss_pred CeEEEEEe-cCCCEEEEEeC-C----CcEEEEECCCC-ceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeE
Q 001349 857 AVTGLAIL-QSGEMLYSGSL-D----KTARVWSIGNE-EIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKT 929 (1094)
Q Consensus 857 ~V~sv~fs-pdg~~LaSgs~-D----gtI~vWdi~~~-~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i 929 (1094)
.+....|| |||++|+-+.. + .+|+++|+.++ +.. ...+... .....|+|||+.++....+..
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l-------~~~~~~~---~~~~~WspDg~~l~y~~~d~~- 243 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI-------ADKVSGT---NGEIVWGPDHTSLFYVTKDET- 243 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC-------CCCEEEE---CSCCEECSSTTEEEEEEECTT-
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC-------CccccCc---eeeEEEecCCCEEEEEEECCC-
Confidence 67889999 99998875433 2 35999999997 511 1111111 223459999987655443210
Q ss_pred EEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCcee--EEeccceeecCCCCCeEEEEEeCCccEEEEEECC--CCE
Q 001349 930 KLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFA--TIQTGHRKLLGKANPVHALQVHNGLVYTASTSLD--GAA 1005 (1094)
Q Consensus 930 ~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~--~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~D--g~~ 1005 (1094)
.....|..+++.++... .++.. .+......+.|++|+.+++..+.+ ...
T Consensus 244 ----------------------~~~~~v~~~~lgt~~~~~~lv~~~-----~~~~~~~~~~~SpDg~~l~~~~~~~~~~~ 296 (751)
T 2xe4_A 244 ----------------------LRENKVWRHVMGKLQSEDVCLYEE-----HNPLFSAFMYKAADTNTLCIGSQSPETAE 296 (751)
T ss_dssp ----------------------CCEEEEEEEETTSCGGGCEEEEEC-----CCTTCEEEEEECTTSSEEEEEEECSSCEE
T ss_pred ----------------------CCCCEEEEEECCCCchhcEEEEec-----CCCceEEEEEECCCCCEEEEEecCCCCce
Confidence 00125777787765421 11110 122345678899999887765532 347
Q ss_pred EEEEECCCCe-EE--EEec--CCCCEEEEEEeC-CEEEEEE-cC----CeEEEEECCCC-cEEE-EecccCCcceEEEEE
Q 001349 1006 VKMWSTSNYN-MV--GSLP--TLSEVRAMVVSS-ELVYLGC-KG----GTVEIWDQKRQ-IRIE-TLQTGTSGKVQCMAL 1072 (1094)
Q Consensus 1006 I~iwd~~~~~-~~--~~~~--~~~~v~~l~~sp-d~l~sgs-~d----g~I~vwd~~t~-~~~~-~l~~~h~~~I~~l~~ 1072 (1094)
|.++|+.++. .. ..+. ......++.|+. +.++..+ .+ ..|..+|+.++ .... .+.......+..+.+
T Consensus 297 l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~ 376 (751)
T 2xe4_A 297 VHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV 376 (751)
T ss_dssp EEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE
T ss_pred EEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE
Confidence 8889988752 12 3333 234456666443 4444443 32 36777887753 2122 232111124566666
Q ss_pred cCCCCEEEEEeCCCcEEEE
Q 001349 1073 DDNEEFLVIGTSDGRIQAW 1091 (1094)
Q Consensus 1073 Spdg~~L~sgs~DG~I~iW 1091 (1094)
. .+.++++...+|..++|
T Consensus 377 ~-~~~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 377 R-SNYLVVAGRRAGLTRIW 394 (751)
T ss_dssp C-SSEEEEEEEETTEEEEE
T ss_pred E-CCEEEEEEEeCCEEEEE
Confidence 5 33455677778865554
No 392
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=97.07 E-value=0.013 Score=60.53 Aligned_cols=186 Identities=15% Similarity=0.104 Sum_probs=122.0
Q ss_pred CCcHHHHHHHHhcC----hHHHHHHHHhcCCChHHHHHhhhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcc
Q 001349 356 ESDVERIVALFKKG----LLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEE 431 (1094)
Q Consensus 356 ~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~ 431 (1094)
+..++.|+.+|+.+ +..|+..|..+.. -+.+|.|+..|...+.. -+..|+..|..+
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-------~~~~~~L~~~l~~~~~~-------vr~~a~~aL~~~------ 77 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-------ERAVEPLIKALKDEDAW-------VRRAAADALGQI------ 77 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSCHH-------HHHHHHHHHHHH------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------ccHHHHHHHHHcCCCHH-------HHHHHHHHHHhh------
Confidence 44678888888776 5567777776654 13458888888754211 134555555543
Q ss_pred cccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHHH
Q 001349 432 SIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFL 511 (1094)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 511 (1094)
.....++.|+..+...+...|..|+..|...- +...++.|+.++...+...|..|+..|
T Consensus 78 ----------~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL 136 (211)
T 3ltm_A 78 ----------GDERAVEPLIKALKDEDGWVRQSAAVALGQIG-----------DERAVEPLIKALKDEDWFVRIAAAFAL 136 (211)
T ss_dssp ----------CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-----------CGGGHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred ----------CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------cHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 24578899999999999999998888776441 234567788888777777777777777
Q ss_pred HHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcC
Q 001349 512 SELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNS 591 (1094)
Q Consensus 512 ~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~~~~~reea~~~~~~~l~~~ 591 (1094)
..+- .-..+..|..+++...+.-+..++..|.++.- +++++.|...+.++
T Consensus 137 ~~~~-------------------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~ 186 (211)
T 3ltm_A 137 GEIG-------------------DERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETG 186 (211)
T ss_dssp HHHC-------------------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHC
T ss_pred HHcC-------------------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCC
Confidence 6651 11233345556655555555667777777742 78999999998865
Q ss_pred CChHHHHHHHHHHHhccccccc
Q 001349 592 DYPAAQLAAAKTIVSLQGRFTT 613 (1094)
Q Consensus 592 ~~~~~~~~~~~~~~~l~g~~s~ 613 (1094)
+ +.++..|+.+|..+++....
T Consensus 187 ~-~~vr~~A~~aL~~~~~~~~~ 207 (211)
T 3ltm_A 187 T-GFARKVAVNYLETHKSFNHH 207 (211)
T ss_dssp C-HHHHHHHHHHHHC-------
T ss_pred C-HHHHHHHHHHHHhcCCCCCC
Confidence 4 67899999999998876543
No 393
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.05 E-value=0.36 Score=53.46 Aligned_cols=107 Identities=16% Similarity=0.216 Sum_probs=68.2
Q ss_pred CCCCeEEEEEeCCccEEEEEECCCCEEEEEEC--CCCeEEEEecCCCCEEEEEEeCC-EEEEEEcCCeEEEEECCCCcEE
Q 001349 980 KANPVHALQVHNGLVYTASTSLDGAAVKMWST--SNYNMVGSLPTLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRI 1056 (1094)
Q Consensus 980 h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~--~~~~~~~~~~~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~~~ 1056 (1094)
+...+..+.+.+++.+++.+. +|...+-+|- .+.+.+. ......+..+.+.++ .++.++.+|.+++++...++..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~tW~~~~-~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW 238 (327)
T 2xbg_A 161 AIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQTAWEPHN-RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENW 238 (327)
T ss_dssp CCCCEEEEEECTTSCEEEEET-TSSEEEEECTTCSSCEEEE-CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEE
T ss_pred CCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCCCceeECC-CCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCee
Confidence 345788999998888776653 4445555553 3444442 234567888888877 6667778898888754434443
Q ss_pred EEeccc---CCcceEEEEEcCCCCEEEEEeCCCcEE
Q 001349 1057 ETLQTG---TSGKVQCMALDDNEEFLVIGTSDGRIQ 1089 (1094)
Q Consensus 1057 ~~l~~~---h~~~I~~l~~Spdg~~L~sgs~DG~I~ 1089 (1094)
..+..+ +...+.++++.+++..++++. +|.|.
T Consensus 239 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i~ 273 (327)
T 2xbg_A 239 GELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGALL 273 (327)
T ss_dssp CCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCEE
T ss_pred EeccCCcccCCcceEEEEecCCCEEEEEeC-CCeEE
Confidence 333222 223588999998887666654 66663
No 394
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=96.98 E-value=0.33 Score=53.61 Aligned_cols=217 Identities=11% Similarity=0.054 Sum_probs=117.7
Q ss_pred CCeEEEEecCCCcceeEEEecccCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCce-EEEEecccCccceeeeecCc
Q 001349 832 DGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS-GEMLYSGSLDKTARVWSIGNEEI-HCVQVHDIKDQIQNLAVSNS 909 (1094)
Q Consensus 832 Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspd-g~~LaSgs~DgtI~vWdi~~~~~-~~~~~~~~~~~V~~v~~~~~ 909 (1094)
...|+.+|+.+........+. ....+..++|++. +.+.++-...+.|..++.+++.. ..+.... -. .+.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~-l~-------~p~ 82 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG-LL-------SPD 82 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEEC-CS-------CCC
T ss_pred cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCC-CC-------Ccc
Confidence 467899999876311122222 2345678999985 44555555677888888876521 1111000 00 111
Q ss_pred eEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEE-EEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEE
Q 001349 910 ILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYC-GCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQ 988 (1094)
Q Consensus 910 ~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~s-gs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~ 988 (1094)
.+++.+.+. .|+. -...+.|.++++........ ..........++
T Consensus 83 glavd~~~g----------------------------~ly~~d~~~~~I~~~~~dG~~~~~l------~~~~~~~P~gia 128 (318)
T 3sov_A 83 GLACDWLGE----------------------------KLYWTDSETNRIEVSNLDGSLRKVL------FWQELDQPRAIA 128 (318)
T ss_dssp EEEEETTTT----------------------------EEEEEETTTTEEEEEETTSCSCEEE------ECSSCSSEEEEE
T ss_pred EEEEEcCCC----------------------------eEEEEECCCCEEEEEECCCCcEEEE------EeCCCCCccEEE
Confidence 222333222 3333 33456788888764432211 112234568899
Q ss_pred EeCCccEEEEEE-CCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEE-EcCCeEEEEECCCCcEEEEecccC
Q 001349 989 VHNGLVYTASTS-LDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLG-CKGGTVEIWDQKRQIRIETLQTGT 1063 (1094)
Q Consensus 989 fs~~~~~las~s-~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sg-s~dg~I~vwd~~t~~~~~~l~~~h 1063 (1094)
++|.+.++..+. .....|...++.......... .-.....++++++ .++.+ +..+.|..+|+........+ .+.
T Consensus 129 vdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~-~~~ 207 (318)
T 3sov_A 129 LDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV-KGS 207 (318)
T ss_dssp EEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CSC
T ss_pred EeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEe-cCC
Confidence 997544333333 223478888875432222222 3456789999975 55555 45689999998754332222 233
Q ss_pred CcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1064 SGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1064 ~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
.....++++.. +.++++-...+.|..++.
T Consensus 208 ~~~P~glav~~-~~lywtd~~~~~V~~~~~ 236 (318)
T 3sov_A 208 LPHPFALTLFE-DILYWTDWSTHSILACNK 236 (318)
T ss_dssp CSCEEEEEEET-TEEEEEETTTTEEEEEET
T ss_pred CCCceEEEEeC-CEEEEEecCCCeEEEEEC
Confidence 44567788753 345555555677777664
No 395
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.96 E-value=0.52 Score=55.11 Aligned_cols=246 Identities=12% Similarity=0.080 Sum_probs=129.1
Q ss_pred cEEEEEEeC-C--EEEEE-ECCCeEEEEecCCCcceeEEEec-ccCCCeEEEEE-------ecCCCEEEEEeCCC-c---
Q 001349 815 KVLSIACFR-D--KIFSG-HSDGTIKVWTGRGSILHLIQQIR-EHTKAVTGLAI-------LQSGEMLYSGSLDK-T--- 878 (1094)
Q Consensus 815 ~V~~l~fsp-d--~LaSg-s~Dg~I~vWd~~t~~~~~~~~l~-~H~~~V~sv~f-------spdg~~LaSgs~Dg-t--- 878 (1094)
....|+|+| + .|+.+ ...+.|++.|..++....+.... ........++| +++|++|+.+...+ .
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 567899997 2 44444 44577999999987322222211 12235899999 99999777776654 2
Q ss_pred ---EEEEECCC-CceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcC
Q 001349 879 ---ARVWSIGN-EEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQD 954 (1094)
Q Consensus 879 ---I~vWdi~~-~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~D 954 (1094)
|.+.+... +.... ......+... -.+..+++.|++..| +++-..+
T Consensus 220 ~~~V~~i~r~~~G~~~~---~~~~~~v~~~-~~p~giavdp~~g~L---------------------------Yvtd~~~ 268 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDD---RSDIQLIAAY-KQCNGATIHPINGEL---------------------------YFNSYEK 268 (496)
T ss_dssp EEEEEEEECCTTSCCST---TSCEEEEEEE-SCCCCEEECTTTCCE---------------------------EEEETTT
T ss_pred CceEEEEecCCCCceee---cccceeeccC-CCceEEEEcCCCCeE---------------------------EEEECCC
Confidence 44554333 11100 0000000000 011122234422221 3344466
Q ss_pred CeEEEEECC-------CCceeEEecc-----cee--ecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEEC--CCCeEE-
Q 001349 955 GAIQEIDLA-------TGTFATIQTG-----HRK--LLGKANPVHALQVHNGLVYTASTSLDGAAVKMWST--SNYNMV- 1017 (1094)
Q Consensus 955 g~I~iwDl~-------~~~~~~~~~~-----~~~--~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~--~~~~~~- 1017 (1094)
+.|..+|+. ++........ ... ..+.....+.++|+|++.++..+....+.|+.+|. ..+...
T Consensus 269 g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~ 348 (496)
T 3kya_A 269 GQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFIT 348 (496)
T ss_dssp TEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECC
T ss_pred CEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecc
Confidence 778899987 5543000000 000 11223456799999999855555445568988654 333220
Q ss_pred -EEecC----C------------CCEE-EEEEe-------CC-EEEEE-EcCCeEEEEECCCCcEEEEecc---------
Q 001349 1018 -GSLPT----L------------SEVR-AMVVS-------SE-LVYLG-CKGGTVEIWDQKRQIRIETLQT--------- 1061 (1094)
Q Consensus 1018 -~~~~~----~------------~~v~-~l~~s-------pd-~l~sg-s~dg~I~vwd~~t~~~~~~l~~--------- 1061 (1094)
..+.+ . .... .+++. ++ .|+++ +.++.|+.++ .+|. +.++-.
T Consensus 349 ~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~ 426 (496)
T 3kya_A 349 PYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLAD 426 (496)
T ss_dssp CEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHH
T ss_pred cEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccC
Confidence 12211 0 1244 55664 34 34444 4678999998 4554 444411
Q ss_pred ----cC----------CcceEEEEEcCC-CCEEEEEeCCCcEEEEeC
Q 001349 1062 ----GT----------SGKVQCMALDDN-EEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1062 ----~h----------~~~I~~l~~Spd-g~~L~sgs~DG~I~iWdl 1093 (1094)
|. -.....|+++++ |.+.++=+.+++|+.+++
T Consensus 427 ~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~ 473 (496)
T 3kya_A 427 GNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISM 473 (496)
T ss_dssp SCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEEC
Confidence 10 124779999997 766666666788988875
No 396
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.94 E-value=0.93 Score=55.05 Aligned_cols=223 Identities=11% Similarity=0.041 Sum_probs=128.7
Q ss_pred CCCCeEEEeCCcc--eee-cccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecC
Q 001349 793 HDSSADFWNHREL--VHV-DSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS 866 (1094)
Q Consensus 793 ~dg~I~vWd~~~~--~~~-~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspd 866 (1094)
..+.|+..++... ... ....-..+..++|++. .+++-..++.|..+++.+.. ....+.........+++.+.
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~--~~~v~~~g~~~P~GlAvD~~ 90 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSA--LEHVVEFGLDYPEGMAVDWL 90 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEEECSSCSCCCEEEEETT
T ss_pred eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCC--cEEEEeCCCCCcceEEEEeC
Confidence 5667888887632 111 1223456889999974 55566678999999988763 22223322345678899875
Q ss_pred CCEE-EEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC
Q 001349 867 GEML-YSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ 945 (1094)
Q Consensus 867 g~~L-aSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~ 945 (1094)
+..| ++-...+.|.+.++++.....+..... .....+ ++.|....+.+..+.
T Consensus 91 ~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l-~~P~~i-------avdp~~G~lY~tD~g------------------- 143 (628)
T 4a0p_A 91 GKNLYWADTGTNRIEVSKLDGQHRQVLVWKDL-DSPRAL-------ALDPAEGFMYWTEWG------------------- 143 (628)
T ss_dssp TTEEEEEETTTTEEEEEETTSTTCEEEECSSC-CCEEEE-------EEETTTTEEEEEECS-------------------
T ss_pred CCEEEEEECCCCEEEEEecCCCcEEEEEeCCC-CCcccE-------EEccCCCeEEEeCCC-------------------
Confidence 5544 555556788888887654322221111 112222 255443333222211
Q ss_pred CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCC
Q 001349 946 GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLS 1024 (1094)
Q Consensus 946 ~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~ 1024 (1094)
..+.|...++........ ...-...+.+++++++..+..+....+.|..+|+..... ..+. ...
T Consensus 144 -------~~~~I~r~~~dG~~~~~l-------~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~ 208 (628)
T 4a0p_A 144 -------GKPKIDRAAMDGSERTTL-------VPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLP 208 (628)
T ss_dssp -------SSCEEEEEETTSCSCEEE-------ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCS
T ss_pred -------CCCEEEEEeCCCCceEEE-------ECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCC
Confidence 134555566554332211 112346788999986555555544445899999865433 2232 345
Q ss_pred CEEEEEEeCCEEEEEE-cCCeEEEEECCCCcEEEEe
Q 001349 1025 EVRAMVVSSELVYLGC-KGGTVEIWDQKRQIRIETL 1059 (1094)
Q Consensus 1025 ~v~~l~~spd~l~sgs-~dg~I~vwd~~t~~~~~~l 1059 (1094)
...++++..+.++... ..+.|...|..+|+....+
T Consensus 209 ~P~glav~~~~ly~tD~~~~~I~~~dk~tg~~~~~l 244 (628)
T 4a0p_A 209 HPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTII 244 (628)
T ss_dssp CEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CceEEEEECCEEEEecCCCCEEEEEECCCCCceEEE
Confidence 5678999888766665 4789999998777644444
No 397
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=96.93 E-value=0.54 Score=53.74 Aligned_cols=219 Identities=12% Similarity=0.044 Sum_probs=119.8
Q ss_pred EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEE-EEeCCCcEEEEECCCCc----eEEEEecccCc
Q 001349 825 KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLY-SGSLDKTARVWSIGNEE----IHCVQVHDIKD 899 (1094)
Q Consensus 825 ~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~La-Sgs~DgtI~vWdi~~~~----~~~~~~~~~~~ 899 (1094)
+|+.+. ...|+..|+.+... ...+ .....+..++|++.+..|+ +-...+.|+.+++++.. ...+... .
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~--~~~~-~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~-~-- 157 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEY--TSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-D-- 157 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSC--EEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECS-S--
T ss_pred eeEEec-cceeEEEccCCcce--eEec-cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeC-C--
Confidence 444433 47888889887632 2223 3456788999998655554 44456788888876521 1111000 0
Q ss_pred cceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEe--CCEEEEE-EcCCeEEEEECCCCceeEEecccee
Q 001349 900 QIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALV--QGKVYCG-CQDGAIQEIDLATGTFATIQTGHRK 976 (1094)
Q Consensus 900 ~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s--~~~l~sg-s~Dg~I~iwDl~~~~~~~~~~~~~~ 976 (1094)
-..+..+++. .+.|+.. ...+.|.+.|+.........
T Consensus 158 -----------------------------------~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~----- 197 (400)
T 3p5b_L 158 -----------------------------------IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF----- 197 (400)
T ss_dssp -----------------------------------CSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEE-----
T ss_pred -----------------------------------CCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEE-----
Confidence 0112233332 2334333 34567888887655433221
Q ss_pred ecCCCCCeEEEEEeCCc-cEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEE-cCCeEEEEECC
Q 001349 977 LLGKANPVHALQVHNGL-VYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGC-KGGTVEIWDQK 1051 (1094)
Q Consensus 977 ~~~h~~~V~sl~fs~~~-~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs-~dg~I~vwd~~ 1051 (1094)
.........++++|.+ .+..+-..+...|...++........+. .-.....|+++++ .|+.+. ..+.|..+|+.
T Consensus 198 -~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~d 276 (400)
T 3p5b_L 198 -RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 276 (400)
T ss_dssp -ECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred -eCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCC
Confidence 1123457889999754 3333332222478888886443333333 3467899999975 565554 56889999987
Q ss_pred CCcEEEEecc-cCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1052 RQIRIETLQT-GTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1052 t~~~~~~l~~-~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
.......+.. +......++++. .+.++++-...+.|..+|
T Consensus 277 G~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~ 317 (400)
T 3p5b_L 277 GGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSAN 317 (400)
T ss_dssp SCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEE
T ss_pred CCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEE
Confidence 5443333311 122345677773 344555655667777766
No 398
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.89 E-value=0.27 Score=55.15 Aligned_cols=73 Identities=14% Similarity=0.169 Sum_probs=47.9
Q ss_pred CCcEEEEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEec---ccCCCeEEEEEecC---CCEEEEEeC-C-----CcE
Q 001349 813 NGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIR---EHTKAVTGLAILQS---GEMLYSGSL-D-----KTA 879 (1094)
Q Consensus 813 ~~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~---~H~~~V~sv~fspd---g~~LaSgs~-D-----gtI 879 (1094)
-.....++|.|+ .++.+..+|.|++++ ++....+..+. ........|+|+|+ +..|+.+.. + +.|
T Consensus 30 l~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp CSCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 345689999997 666667789999998 44323333322 22456889999998 555554433 2 567
Q ss_pred EEEECCCC
Q 001349 880 RVWSIGNE 887 (1094)
Q Consensus 880 ~vWdi~~~ 887 (1094)
..|+...+
T Consensus 108 ~r~~~~~~ 115 (352)
T 2ism_A 108 VRLRHLGE 115 (352)
T ss_dssp EEEEECSS
T ss_pred EEEEeCCC
Confidence 78887654
No 399
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.87 E-value=0.00089 Score=56.51 Aligned_cols=48 Identities=10% Similarity=0.266 Sum_probs=39.2
Q ss_pred ceeccCccccccCcEEc-CCcccccHHhHHHHHHhC-CCCCCCCCcCCCC
Q 001349 163 DFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERG-NSSCPITRQKLSS 210 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~~-~cGhtfc~~ci~~~~~~~-~~~CP~c~~~~~~ 210 (1094)
--.|.||.+++..-..- .|||.|=..||.+||+.. ...||.|++....
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 35699999999855443 799999999999999863 2679999988653
No 400
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.85 E-value=0.03 Score=68.88 Aligned_cols=113 Identities=8% Similarity=0.085 Sum_probs=70.0
Q ss_pred ccccc-cCcEEEEeeCCC-----------CeEEEeCCcc----e-eecccCCCcEEEEEEeCC--EEEEEE-CCCeEEEE
Q 001349 779 SPLAF-EMVKVLSNGHDS-----------SADFWNHREL----V-HVDSSENGKVLSIACFRD--KIFSGH-SDGTIKVW 838 (1094)
Q Consensus 779 ~~~~~-d~~~l~s~s~dg-----------~I~vWd~~~~----~-~~~~~h~~~V~~l~fspd--~LaSgs-~Dg~I~vW 838 (1094)
..+.+ ++..++.|+.++ .+.+||..+. . .....+.....++++..+ +++.|+ .++.+.+|
T Consensus 191 ~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~y 270 (656)
T 1k3i_A 191 AAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLY 270 (656)
T ss_dssp EEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEE
T ss_pred EEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEe
Confidence 33444 677778877643 4778887621 1 111223333445666553 777776 45689999
Q ss_pred ecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEe-CC-----CcEEEEECCCCceEEE
Q 001349 839 TGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGS-LD-----KTARVWSIGNEEIHCV 892 (1094)
Q Consensus 839 d~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs-~D-----gtI~vWdi~~~~~~~~ 892 (1094)
|..++.+..+..+... ..-.++++.++|++++.|+ .+ ..+.+||..+++...+
T Consensus 271 d~~t~~W~~~~~~~~~-R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~ 329 (656)
T 1k3i_A 271 DSSSDSWIPGPDMQVA-RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL 329 (656)
T ss_dssp EGGGTEEEECCCCSSC-CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEE
T ss_pred cCcCCceeECCCCCcc-ccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeC
Confidence 9998865554433221 1223456667999999998 44 5799999998765443
No 401
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=96.78 E-value=0.027 Score=57.51 Aligned_cols=183 Identities=15% Similarity=0.127 Sum_probs=119.8
Q ss_pred cHHHHHHHHhcC----hHHHHHHHHhcCCChHHHHHhhhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccc
Q 001349 358 DVERIVALFKKG----LLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESI 433 (1094)
Q Consensus 358 ~~~~L~~lLk~g----~~~Aa~~l~~L~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~ 433 (1094)
..+.++.+|+.+ +..|+..|..+... +.++.|+..|...... -+..|+..|..+
T Consensus 15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~-------~~~~~L~~~l~~~~~~-------vr~~a~~~L~~~-------- 72 (201)
T 3ltj_A 15 KVEMYIKNLQDDSYYVRRAAAYALGKIGDE-------RAVEPLIKALKDEDAW-------VRRAAADALGQI-------- 72 (201)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHCCG-------GGHHHHHHHTTCSSHH-------HHHHHHHHHHHH--------
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHhcCCh-------hHHHHHHHHHcCCCHH-------HHHHHHHHHHhh--------
Confidence 457777888776 56677777766542 3458888888644211 134455545433
Q ss_pred cccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHH
Q 001349 434 VSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSE 513 (1094)
Q Consensus 434 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~e 513 (1094)
....+++.|++.+...+...|..|+..|...- +...++.++.++...+...|..|+..|..
T Consensus 73 --------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~ 133 (201)
T 3ltj_A 73 --------GDERAVEPLIKALKDEDGWVRQSAAVALGQIG-----------DERAVEPLIKALKDEDWFVRIAAAFALGE 133 (201)
T ss_dssp --------CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred --------CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------cHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 23468899999999999999999888776541 22356677777776666677777777765
Q ss_pred HHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCC
Q 001349 514 LVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDY 593 (1094)
Q Consensus 514 l~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~~~~~reea~~~~~~~l~~~~~ 593 (1094)
+-. -.....|..+++...++-+..++..|.++. .+++++.|...+.+. .
T Consensus 134 ~~~-------------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~-----------~~~~~~~L~~~l~d~-~ 182 (201)
T 3ltj_A 134 IGD-------------------ERAVEPLIKALKDEDGWVRQSAADALGEIG-----------GERVRAAMEKLAETG-T 182 (201)
T ss_dssp HTC-------------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-----------SHHHHHHHHHHHHHC-C
T ss_pred hCC-------------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------chhHHHHHHHHHhCC-C
Confidence 511 122334555665555555566777777763 278999999999765 4
Q ss_pred hHHHHHHHHHHHhcccccc
Q 001349 594 PAAQLAAAKTIVSLQGRFT 612 (1094)
Q Consensus 594 ~~~~~~~~~~~~~l~g~~s 612 (1094)
..++..|+.+|..+.+..|
T Consensus 183 ~~vr~~A~~aL~~l~~~~~ 201 (201)
T 3ltj_A 183 GFARKVAVNYLETHKSLIS 201 (201)
T ss_dssp HHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHHHhhcC
Confidence 6789999999999886643
No 402
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.77 E-value=0.58 Score=52.46 Aligned_cols=247 Identities=11% Similarity=0.062 Sum_probs=121.1
Q ss_pred CCcEEEEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEec---ccCCCeEEEEEecC---CCEEEEEeC----C----C
Q 001349 813 NGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIR---EHTKAVTGLAILQS---GEMLYSGSL----D----K 877 (1094)
Q Consensus 813 ~~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~---~H~~~V~sv~fspd---g~~LaSgs~----D----g 877 (1094)
-.....++|.|+ .|+.+..+|.|+++| .++. ..+..+. ........|+|+|+ +..|+.+.. + +
T Consensus 28 l~~P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVTERPGRLVLIS-PSGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEEEETTTEEEEEC-SSCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEEEeCCCEEEEEe-CCCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 345789999987 777778889999997 3453 3333321 22356889999997 445544432 3 5
Q ss_pred cEEEEECCCC--ce---EEE-EecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEE
Q 001349 878 TARVWSIGNE--EI---HCV-QVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCG 951 (1094)
Q Consensus 878 tI~vWdi~~~--~~---~~~-~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sg 951 (1094)
.|..|+...+ .. +.+ .... .. -...+..+.|.|||...++....+.. .... .. .
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~-~~----~~h~~~~l~~~pDG~Lyvt~G~~~~~---~~~~-------d~-----~ 165 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIP-GA----YIHNGGRIRFGPDGMLYITTGDAADP---RLAQ-------DL-----S 165 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEE-CC----SSCCCCCEEECTTSCEEEECCCTTCG---GGGT-------CT-----T
T ss_pred EEEEEEECCCCcCcCccEEEEEcCC-CC----CCcCCceEEECCCCcEEEEECCCCCC---cccc-------CC-----C
Confidence 6777776654 11 111 1111 00 00123345688888644332211110 0000 00 0
Q ss_pred EcCCeEEEEECCCCceeE--Ee-ccceeecCCCCCeEEEEEeC-CccEEEEEECCC--CEEEEEECCC------------
Q 001349 952 CQDGAIQEIDLATGTFAT--IQ-TGHRKLLGKANPVHALQVHN-GLVYTASTSLDG--AAVKMWSTSN------------ 1013 (1094)
Q Consensus 952 s~Dg~I~iwDl~~~~~~~--~~-~~~~~~~~h~~~V~sl~fs~-~~~~las~s~Dg--~~I~iwd~~~------------ 1013 (1094)
...|.|.-+|... +... .+ ....-..+|. ....++|++ ++.+.++-...+ ..|.+.....
T Consensus 166 ~~~G~I~ri~~dG-~~p~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~ 243 (354)
T 3a9g_A 166 SLAGKILRVDEEG-RPPADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAG 243 (354)
T ss_dssp CCSSEEEEECTTS-CCCTTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCC
T ss_pred CCCeEEEEEcCCC-CCCCCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCC
Confidence 1123344444321 1000 00 0000112232 345788887 555544432211 1233322110
Q ss_pred ----CeEEEEe-cCCCCEEEEEEe--------CC-EEEEEEcCCeEEEEECCCC-cEE--EEecccCCcceEEEEEcCCC
Q 001349 1014 ----YNMVGSL-PTLSEVRAMVVS--------SE-LVYLGCKGGTVEIWDQKRQ-IRI--ETLQTGTSGKVQCMALDDNE 1076 (1094)
Q Consensus 1014 ----~~~~~~~-~~~~~v~~l~~s--------pd-~l~sgs~dg~I~vwd~~t~-~~~--~~l~~~h~~~I~~l~~Spdg 1076 (1094)
..++..+ ..+.....++|. .. ++++....+.|...++... +.. ..+..+....+..+++.|||
T Consensus 244 ~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG 323 (354)
T 3a9g_A 244 RGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDG 323 (354)
T ss_dssp CTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTS
T ss_pred CCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCC
Confidence 0123333 234567788883 22 4444445678888888753 322 23322334579999999999
Q ss_pred CEEEEEe
Q 001349 1077 EFLVIGT 1083 (1094)
Q Consensus 1077 ~~L~sgs 1083 (1094)
.+.++..
T Consensus 324 ~lyv~~~ 330 (354)
T 3a9g_A 324 GILISTS 330 (354)
T ss_dssp CEEEEEC
T ss_pred cEEEEEe
Confidence 8776664
No 403
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.63 E-value=0.38 Score=55.67 Aligned_cols=102 Identities=9% Similarity=0.157 Sum_probs=59.5
Q ss_pred cEEEEeeCCCCeEEEeCC-cceeecccCCCcEEEEEEeCC-EEEEEECCC----e-EEEEecCCCcceeEEEecccCCCe
Q 001349 786 VKVLSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACFRD-KIFSGHSDG----T-IKVWTGRGSILHLIQQIREHTKAV 858 (1094)
Q Consensus 786 ~~l~s~s~dg~I~vWd~~-~~~~~~~~h~~~V~~l~fspd-~LaSgs~Dg----~-I~vWd~~t~~~~~~~~l~~H~~~V 858 (1094)
..|..+...+.|+.++.. .....+.........++|+++ .|+.+...+ . +...+...+ ......+. .....
T Consensus 153 g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~-~~~~~~~~-~~~~P 230 (433)
T 4hw6_A 153 DDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASG-FTERLSLC-NARGA 230 (433)
T ss_dssp CEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGT-TCCEEEEE-ECSSB
T ss_pred CEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCC-eecccccc-ccCCC
Confidence 344444444889999884 334444445567899999986 344444321 2 333333322 11111221 23445
Q ss_pred EEEEEec-CCCEEEEEeCCCcEEEEECCCCce
Q 001349 859 TGLAILQ-SGEMLYSGSLDKTARVWSIGNEEI 889 (1094)
Q Consensus 859 ~sv~fsp-dg~~LaSgs~DgtI~vWdi~~~~~ 889 (1094)
..++++| +|.+.++-..++.|+.+|..++..
T Consensus 231 ~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~ 262 (433)
T 4hw6_A 231 KTCAVHPQNGKIYYTRYHHAMISSYDPATGTL 262 (433)
T ss_dssp CCCEECTTTCCEEECBTTCSEEEEECTTTCCE
T ss_pred CEEEEeCCCCeEEEEECCCCEEEEEECCCCeE
Confidence 6788999 677666666778899999987754
No 404
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.57 E-value=1.6 Score=56.69 Aligned_cols=228 Identities=14% Similarity=0.126 Sum_probs=123.4
Q ss_pred CCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecC------CCEEEEEeC-CCcEEEEECC
Q 001349 813 NGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS------GEMLYSGSL-DKTARVWSIG 885 (1094)
Q Consensus 813 ~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspd------g~~LaSgs~-DgtI~vWdi~ 885 (1094)
...|...+.++.+++.++ ++.+.++.+..+........ .-...|.|+++.|. +++++.|.+ |++|+|+++.
T Consensus 513 ~~~I~~As~n~~~vvva~-g~~l~~fel~~~~L~~~~~~-~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~ 590 (1158)
T 3ei3_A 513 AKNISVASCNSSQVVVAV-GRALYYLQIHPQELRQISHT-EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLP 590 (1158)
T ss_dssp CCCCCEEEECSSEEEEEE-TTEEEEEEEETTEEEEEEEE-ECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETT
T ss_pred CCEEEEEEeCCCEEEEEE-CCEEEEEEeeCCceeeeccc-CCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECC
Confidence 346888887777666665 67888888876643333332 24568999999863 479999997 9999999998
Q ss_pred CCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEEC--C
Q 001349 886 NEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDL--A 963 (1094)
Q Consensus 886 ~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl--~ 963 (1094)
+-+..............++. +. ..++. -.+.+|-.||.+..+.+ .
T Consensus 591 ~l~~~~~~~L~~~~~p~si~-------l~---------~~~~~-----------------~~L~igl~dG~l~~~~~d~~ 637 (1158)
T 3ei3_A 591 SFELLHKEMLGGEIIPRSIL-------MT---------TFESS-----------------HYLLCALGDGALFYFGLNIE 637 (1158)
T ss_dssp TCCEEEEEECCSSCCEEEEE-------EE---------EETTE-----------------EEEEEEETTSEEEEEEECTT
T ss_pred CCCeEEEEECCCCCCCcEEE-------EE---------EeCCC-----------------cEEEEEeCCCeEEEEEEcCC
Confidence 75422222221111222221 11 00111 13778888888765544 4
Q ss_pred CCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEE-EEecCCCCEEEEEEe----CCEEEE
Q 001349 964 TGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMV-GSLPTLSEVRAMVVS----SELVYL 1038 (1094)
Q Consensus 964 ~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~-~~~~~~~~v~~l~~s----pd~l~s 1038 (1094)
+|...... ..+.| ..++.-..+...+...+-+..+. ...+|... ++.. ..+....--....|+ |+.++.
T Consensus 638 tg~l~d~r---~~~LG-~~pv~L~~~~~~~~~~V~a~s~r-p~liy~~~-~~l~~s~l~~~~v~~~~~F~se~~~~g~v~ 711 (1158)
T 3ei3_A 638 TGLLSDRK---KVTLG-TQPTVLRTFRSLSTTNVFACSDR-PTVIYSSN-HKLVFSNVNLKEVNYMCPLNSDGYPDSLAL 711 (1158)
T ss_dssp TCCEEEEE---EEECC-SSCCEEEEEESSSCEEEEEESSS-CEEEEESS-SSEEEEEBSSSCCCEEEEECCSSSTTEEEE
T ss_pred CCccccce---eEEcC-CCceEEEEEeeCCceeEEEECCC-CEEEEEcC-CceEEeccChHHhceEeccCcccCCCcEEE
Confidence 55443221 12333 24555444543332222222232 33444433 3322 222222111233343 456665
Q ss_pred EEcCCeEEEEECCCCc--EEEEecccCCcceEEEEEcCCCCEEEEEeC
Q 001349 1039 GCKGGTVEIWDQKRQI--RIETLQTGTSGKVQCMALDDNEEFLVIGTS 1084 (1094)
Q Consensus 1039 gs~dg~I~vwd~~t~~--~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~ 1084 (1094)
.+ ++.++|..+.... .+.++. -...+..++++|+.+.++.+..
T Consensus 712 ~~-~~~LrI~~i~~~~~~~~~~ip--L~~Tprri~y~~~~~~~~v~~~ 756 (1158)
T 3ei3_A 712 AN-NSTLTIGTIDEIQKLHIRTVP--LYESPRKICYQEVSQCFGVLSS 756 (1158)
T ss_dssp EC-SSCEEEEEECCSSSEEEEEEE--CSSEEEEEEEEGGGTEEEEEEE
T ss_pred Ec-CCceEEEEecccCCeeEEEEe--CCCCceEEEEcCCCCEEEEEEE
Confidence 55 4559998875433 334443 3457899999999887766553
No 405
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.55 E-value=1.6 Score=49.61 Aligned_cols=253 Identities=13% Similarity=0.081 Sum_probs=143.4
Q ss_pred CCeEEEeCCcceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEE
Q 001349 795 SSADFWNHRELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYS 872 (1094)
Q Consensus 795 g~I~vWd~~~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaS 872 (1094)
..|.|-|........+..- .--+...+|. .+|--. ..++.|+|+++. ..++.+.- ...|.--.|-.+ +.|+-
T Consensus 48 ~~vvIiDl~~~~~~~rrpi-~AdsAIMnP~~~iiALra-g~~lQiFnle~K--~klks~~~-~e~VvfWkWis~-~~l~l 121 (494)
T 1bpo_A 48 AQVVIIDMNDPSNPIRRPI-SADSAIMNPASKVIALKA-GKTLQIFNIEMK--SKMKAHTM-TDDVTFWKWISL-NTVAL 121 (494)
T ss_dssp CEEEEEETTSTTSCEEEEC-CCSEEEECSSSSCEEEEE-TTEEEEEETTTT--EEEEEEEC-SSCCCEEEEEET-TEEEE
T ss_pred CeEEEEECCCCCcceeccc-ccceeeeCCCCcEEEEec-CCeEEEEchHHh--hhhcceec-CCCceEEEecCC-CeEEE
Confidence 4677777763222211100 0112334553 333333 789999999998 66666653 345666677643 45555
Q ss_pred EeCCCcEEEEECCCCc--eEEEEeccc--CccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEE
Q 001349 873 GSLDKTARVWSIGNEE--IHCVQVHDI--KDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKV 948 (1094)
Q Consensus 873 gs~DgtI~vWdi~~~~--~~~~~~~~~--~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l 948 (1094)
.+. ..|+-|++.+.. .+.+..+.. ...|.+ ...+++.+++++.+ +.-.++.+
T Consensus 122 VT~-taVyHWsi~~~s~P~kvFdR~~~L~~~QIIn-------Y~~d~~~kW~~l~G----------------I~~~~~~v 177 (494)
T 1bpo_A 122 VTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIIN-------YRTDAKQKWLLLTG----------------ISAQQNRV 177 (494)
T ss_dssp ECS-SEEEEEESSSSCCCEEEEECCGGGTTCEEEE-------EEECTTSSEEEEEE----------------EEEETTEE
T ss_pred EcC-CeeEEecccCCCCchhheecchhcccceEEE-------EEECCCCCeEEEEe----------------ecccCCcc
Confidence 544 579999997632 222222211 111211 22466666655432 22223322
Q ss_pred EEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCC---ccEEEEEE--CCCCEEEEEECCCC---e-----
Q 001349 949 YCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG---LVYTASTS--LDGAAVKMWSTSNY---N----- 1015 (1094)
Q Consensus 949 ~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~---~~~las~s--~Dg~~I~iwd~~~~---~----- 1015 (1094)
.|.+++|..+.+.. +.+.||......+....+ ..+++.+. ..|+.++|-++... .
T Consensus 178 -----~G~mQLYS~er~~s-------Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~k 245 (494)
T 1bpo_A 178 -----VGAMQLYSVDRKVS-------QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPK 245 (494)
T ss_dssp -----EEEEEEEESTTCCE-------EEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCC
T ss_pred -----cceEEEeecccccc-------chheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccc
Confidence 47899999887765 345666554444444321 11222222 23458999998542 1
Q ss_pred EEEE--ec---CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcE
Q 001349 1016 MVGS--LP---TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRI 1088 (1094)
Q Consensus 1016 ~~~~--~~---~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I 1088 (1094)
.... ++ ..+...++.+++. .++.-+.-|.|++||+.++.++..-. -....|..-+.+.+..-++..+..|.|
T Consensus 246 k~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nr-Is~~~iF~t~~~~~~~Gi~~Vnr~GqV 324 (494)
T 1bpo_A 246 KAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR-ISGETIFVTAPHEATAGIIGVNRKGQV 324 (494)
T ss_dssp EEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEEETTTTEEEEEETTCEE
T ss_pred eeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeec-ccCCceEEecccCCCCcEEEEccCceE
Confidence 1111 11 2456778999987 78889999999999999999988763 344566666665555556666677766
Q ss_pred EE
Q 001349 1089 QA 1090 (1094)
Q Consensus 1089 ~i 1090 (1094)
.-
T Consensus 325 l~ 326 (494)
T 1bpo_A 325 LS 326 (494)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 406
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.47 E-value=0.97 Score=50.11 Aligned_cols=198 Identities=10% Similarity=0.193 Sum_probs=115.4
Q ss_pred EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecC----CC---EEEEEeC---CCcEEEEECC--CCceEEE
Q 001349 825 KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS----GE---MLYSGSL---DKTARVWSIG--NEEIHCV 892 (1094)
Q Consensus 825 ~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspd----g~---~LaSgs~---DgtI~vWdi~--~~~~~~~ 892 (1094)
+++.....+-+.+||+ +| +.++.+.. +.++.+..-|+ |+ ++++... +++|.+|+++ ++++..+
T Consensus 42 ~ii~t~k~~gL~Vydl-~G--~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i 116 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DG--KMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSM 116 (355)
T ss_dssp EEEEEETTTEEEEEET-TS--CEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEEC
T ss_pred EEEEEcCCCCEEEEcC-CC--cEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeec
Confidence 7777778899999999 55 56777653 67888887763 22 2333333 5789999774 4332222
Q ss_pred EecccCccceeeeecCceEEE--eeC-CCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECC---CCc
Q 001349 893 QVHDIKDQIQNLAVSNSILCF--IPQ-GAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLA---TGT 966 (1094)
Q Consensus 893 ~~~~~~~~V~~v~~~~~~~~f--spd-g~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~---~~~ 966 (1094)
... ..++..-...+..+|+ +|. ++. ++++...+|.+..|++. .+.
T Consensus 117 ~~~--~~pv~t~~~~pyGlcly~~~~~g~~---------------------------yafV~~k~G~~~q~~l~~~~~g~ 167 (355)
T 3amr_A 117 TDP--DHPIATAINEVYGFTLYHSQKTGKY---------------------------YAMVTGKEGEFEQYELKADKNGY 167 (355)
T ss_dssp SCT--TSCEECCCSSCCCEEEEECTTTCCE---------------------------EEEEECSSSEEEEEEEEECTTSC
T ss_pred ccc--ccCcCCCCCCeeEEEEEecCCCCcE---------------------------EEEEECCCCeEEEEEEEeCCCCc
Confidence 110 0011000011222223 332 221 36666777888888773 332
Q ss_pred eeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECC-----CCeEEEEecCC---CCEEEEEEe--CC--
Q 001349 967 FATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTS-----NYNMVGSLPTL---SEVRAMVVS--SE-- 1034 (1094)
Q Consensus 967 ~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~-----~~~~~~~~~~~---~~v~~l~~s--pd-- 1034 (1094)
...... +++.- ...+..+.+++....+..+-.+. -|..+|.. +++.+..+... ..+..|++- ++
T Consensus 168 ~~~~lV--R~f~l-gsq~EgcvvDd~~g~Lyv~eEd~-GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~ 243 (355)
T 3amr_A 168 ISGKKV--RAFKM-NSQTEGMAADDEYGRLYIAEEDE-AIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGK 243 (355)
T ss_dssp EEEEEE--EEEEC-SSCEEEEEEETTTTEEEEEETTT-EEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGC
T ss_pred ccceEE--EEecC-CCCcceEEEcCCCCeEEEecccc-eEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCC
Confidence 221111 22222 24677888888777777777664 56666654 35566665432 468888884 32
Q ss_pred -EEEEEE-cCCeEEEEECC-CCcEEEEec
Q 001349 1035 -LVYLGC-KGGTVEIWDQK-RQIRIETLQ 1060 (1094)
Q Consensus 1035 -~l~sgs-~dg~I~vwd~~-t~~~~~~l~ 1060 (1094)
++++++ .+++..|||.. +.+.+..|.
T Consensus 244 gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 244 GYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred EEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 677666 57899999997 677777774
No 407
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=96.47 E-value=1.6 Score=54.36 Aligned_cols=215 Identities=11% Similarity=0.019 Sum_probs=113.3
Q ss_pred CCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCCCce----EEEEecccCccceeeee
Q 001349 832 DGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGE-MLYSGSLDKTARVWSIGNEEI----HCVQVHDIKDQIQNLAV 906 (1094)
Q Consensus 832 Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~-~LaSgs~DgtI~vWdi~~~~~----~~~~~~~~~~~V~~v~~ 906 (1094)
...|+..++.... ....+ .....+..|+|++.+. ++++-...+.|+.+++..... ..+... ....
T Consensus 403 ~~~Ir~i~l~~~~--~~~l~-~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~-~l~~------ 472 (791)
T 3m0c_C 403 RHEVRKMTLDRSE--YTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-DIQA------ 472 (791)
T ss_dssp BSSEEEECTTSCC--CEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS-SCSC------
T ss_pred ccceeEeeccCCc--ceeee-cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEec-CCCC------
Confidence 4567888887663 22223 3456678999998544 445555567888888875310 111000 0011
Q ss_pred cCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEE-EEEcCCeEEEEECCCCceeEEeccceeecCCCCCeE
Q 001349 907 SNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVY-CGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVH 985 (1094)
Q Consensus 907 ~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~-sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~ 985 (1094)
+..+++.+.+. .|+ +-...+.|.+.++........ +........
T Consensus 473 -P~GLAvD~~~~----------------------------~LY~tD~~~~~I~v~~ldG~~~~~l------~~~~l~~P~ 517 (791)
T 3m0c_C 473 -PDGLAVDWIHS----------------------------NIYWTDSVLGTVSVADTKGVKRKTL------FRENGSKPR 517 (791)
T ss_dssp -CCEEEEETTTT----------------------------EEEEEETTTTEEEEEETTSSSEEEE------EECTTCCEE
T ss_pred -cceeeeeecCC----------------------------cEEEEecCCCeEEEEeCCCCeEEEE------EeCCCCCcc
Confidence 11222333332 333 334457788888765443221 112234578
Q ss_pred EEEEeCCccEEEEEEC-CCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEE-cCCeEEEEECCCCcEEEEec
Q 001349 986 ALQVHNGLVYTASTSL-DGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGC-KGGTVEIWDQKRQIRIETLQ 1060 (1094)
Q Consensus 986 sl~fs~~~~~las~s~-Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs-~dg~I~vwd~~t~~~~~~l~ 1060 (1094)
.|++++...++..+.. ....|...++........+. .-.....|++++. .|+.+. ..+.|..+++........+.
T Consensus 518 gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~ 597 (791)
T 3m0c_C 518 AIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE 597 (791)
T ss_dssp EEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEE
T ss_pred eEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEec
Confidence 9999986433333322 21478888886544333333 3367899999965 566554 56789999987554433332
Q ss_pred c-cCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1061 T-GTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1061 ~-~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
. +.-....+|++.. +.++++-...+.|...+
T Consensus 598 ~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~d 629 (791)
T 3m0c_C 598 DEKRLAHPFSLAVFE-DKVFWTDIINEAIFSAN 629 (791)
T ss_dssp CTTTTSSEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred CCCccCCCCEEEEeC-CEEEEEECCCCEEEEEe
Confidence 1 1122345666642 23334444456666554
No 408
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=96.40 E-value=0.0031 Score=50.99 Aligned_cols=48 Identities=19% Similarity=0.325 Sum_probs=39.3
Q ss_pred ceeccCccccccCcEEcCCcc-----cccHHhHHHHHHh-CCCCCCCCCcCCCC
Q 001349 163 DFVCPITTHIFDDPVTLETGQ-----TYERRAIQEWIER-GNSSCPITRQKLSS 210 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~~~cGh-----tfc~~ci~~~~~~-~~~~CP~c~~~~~~ 210 (1094)
+-.|.||++-..+|.+.||.+ -|=+.|+.+|+.. ++..||+|+..+..
T Consensus 6 ~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 6 VPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 568999999888888888653 6778899999985 46679999988753
No 409
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=96.37 E-value=0.088 Score=61.00 Aligned_cols=149 Identities=11% Similarity=0.058 Sum_probs=92.5
Q ss_pred CceEEEEeC---CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCC----EEEEE
Q 001349 937 YPKCLALVQ---GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGA----AVKMW 1009 (1094)
Q Consensus 937 ~v~~l~~s~---~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~----~I~iw 1009 (1094)
....+++++ +.|+++...+.|+.+|+.++...... ........++|++++.++..+...++ .+..+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-------~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~ 210 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-------SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYIL 210 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-------CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-------cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEE
Confidence 456677763 45777777688999999877654321 23356889999999884444443211 33334
Q ss_pred ECCCCeEE--EEecCCCCEEEEEEeC-C-EEEEE-EcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEE-EEe
Q 001349 1010 STSNYNMV--GSLPTLSEVRAMVVSS-E-LVYLG-CKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLV-IGT 1083 (1094)
Q Consensus 1010 d~~~~~~~--~~~~~~~~v~~l~~sp-d-~l~sg-s~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~-sgs 1083 (1094)
+. .+... ..+........++++| + .++.+ ..++.|+.|+..++........+.......++|+|+|++|+ +-.
T Consensus 211 ~~-~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~ 289 (430)
T 3tc9_A 211 TR-ESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVV 289 (430)
T ss_dssp EG-GGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEET
T ss_pred eC-CCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEEC
Confidence 43 22211 2233334456788998 4 45544 46789999999877643333222234578999999999555 445
Q ss_pred CCCcEEEEeC
Q 001349 1084 SDGRIQAWGL 1093 (1094)
Q Consensus 1084 ~DG~I~iWdl 1093 (1094)
..+.|..|+.
T Consensus 290 ~~~~I~~~~~ 299 (430)
T 3tc9_A 290 NQHYILRSDY 299 (430)
T ss_dssp TTTEEEEEEE
T ss_pred CCCEEEEEeC
Confidence 5678888763
No 410
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.36 E-value=1.6 Score=47.67 Aligned_cols=253 Identities=13% Similarity=0.081 Sum_probs=140.6
Q ss_pred CCeEEEeCCcceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEE
Q 001349 795 SSADFWNHRELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYS 872 (1094)
Q Consensus 795 g~I~vWd~~~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaS 872 (1094)
..|.|-|........+..-.. -+...+|. .+|--. ..++.|+|+++. ..++.+.- ...|.--.|-. .+.|+-
T Consensus 49 ~~VvIiDl~n~~~~~Rrpi~A-dsAIMnP~~~ViALra-g~~LQiFnletK--~klks~~~-~e~VvfWkWis-~~~L~l 122 (365)
T 2xzh_A 49 AQVVIIDMNDPSNPIRRPISA-DSAIMNPASKVIALKA-GKTLQIFNIEMK--SKMKAHTM-TDDVTFWKWIS-LNTVAL 122 (365)
T ss_dssp EEEEEEETTSTTSCEEEECCC-SEEEECSSSSEEEEEE-TTEEEEEETTTT--EEEEEEEC-SSCEEEEEECS-SSEEEE
T ss_pred CEEEEEECCCCCCcccccccc-ceeeeCCCccEEEEec-CCeEEEechHHh--hhhcceec-CCccEEEEecC-CCeEEE
Confidence 367777776322221111011 12334554 444444 689999999998 66666653 45677777764 345555
Q ss_pred EeCCCcEEEEECCCCc--eEEEEeccc--CccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEE
Q 001349 873 GSLDKTARVWSIGNEE--IHCVQVHDI--KDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKV 948 (1094)
Q Consensus 873 gs~DgtI~vWdi~~~~--~~~~~~~~~--~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l 948 (1094)
.+. ..|+.|++.+.. .+.+..+.. ...|.+ ...+++.+++++.+ +.-.++.+
T Consensus 123 VT~-taVyHWs~~~~s~P~kvFdR~~~L~~~QIIn-------Y~~d~~~kW~~l~G----------------I~~~~~~v 178 (365)
T 2xzh_A 123 VTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIIN-------YRTDAKQKWLLLTG----------------ISAQQNRV 178 (365)
T ss_dssp EES-SEEEEEESSTTCCCEEEEECCGGGTTCEEEE-------EEECTTSCEEEEEE----------------EEEETTEE
T ss_pred EcC-CcEEEEcccCCCCCceeeecchhcccceEEE-------EEECCCCCEEEEEe----------------EeccCCcc
Confidence 554 479999997633 222222211 111111 22456666655432 11222322
Q ss_pred EEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCC---ccEEE--EEECCCCEEEEEECCCC---eE----
Q 001349 949 YCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG---LVYTA--STSLDGAAVKMWSTSNY---NM---- 1016 (1094)
Q Consensus 949 ~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~---~~~la--s~s~Dg~~I~iwd~~~~---~~---- 1016 (1094)
.|.+++|..+.+.. +.+.||......+.+..+ ..+++ .-...|+.++|-++... .+
T Consensus 179 -----~G~mQLYS~er~~s-------Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~k 246 (365)
T 2xzh_A 179 -----VGAMQLYSVDRKVS-------QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPK 246 (365)
T ss_dssp -----EEEEEEEETTTTEE-------EEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCC
T ss_pred -----ceeEEEEeeccccc-------ceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCccc
Confidence 37899999887654 344555443333332211 11112 11223348999988432 11
Q ss_pred -EEE--ec---CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcE
Q 001349 1017 -VGS--LP---TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRI 1088 (1094)
Q Consensus 1017 -~~~--~~---~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I 1088 (1094)
... ++ ..+...++.+|+. .++.-+.-|.|++||+.++.++..-+ -....|..-+-+.+..=++..+..|.|
T Consensus 247 k~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nr-IS~d~iF~ta~~~~~~Gi~~Vnr~GqV 325 (365)
T 2xzh_A 247 KAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR-ISGETIFVTAPHEATAGIIGVNRKGQV 325 (365)
T ss_dssp EEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEEEGGGTEEEEEETTCEE
T ss_pred ccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEec-cCCCceEEecccCCCCcEEEEcCCCEE
Confidence 111 11 2456778999987 78889999999999999999988763 344456555555444456666677765
Q ss_pred EE
Q 001349 1089 QA 1090 (1094)
Q Consensus 1089 ~i 1090 (1094)
.-
T Consensus 326 l~ 327 (365)
T 2xzh_A 326 LS 327 (365)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 411
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.35 E-value=0.012 Score=73.00 Aligned_cols=227 Identities=9% Similarity=-0.046 Sum_probs=117.0
Q ss_pred CCCeEEEeCCcc-eeecccCCCcEEEEEEeCC--EEEEE-ECCCeEEEEecCCCc--ceeEEEecccCCCeEEEEEecC-
Q 001349 794 DSSADFWNHREL-VHVDSSENGKVLSIACFRD--KIFSG-HSDGTIKVWTGRGSI--LHLIQQIREHTKAVTGLAILQS- 866 (1094)
Q Consensus 794 dg~I~vWd~~~~-~~~~~~h~~~V~~l~fspd--~LaSg-s~Dg~I~vWd~~t~~--~~~~~~l~~H~~~V~sv~fspd- 866 (1094)
.+.|++.+.... ...+......+..++|.+. .|+.+ ...+.|+.+++.+.. ......+.........|++.+.
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~ 464 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 464 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSS
T ss_pred ccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeC
Confidence 356666666532 1122222345678899873 44444 456889999987510 0111112112223456788754
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCC
Q 001349 867 GEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQG 946 (1094)
Q Consensus 867 g~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~ 946 (1094)
++++++-...+.|.+++..+.....+.... ... +..+++.|.+..|.+..+.
T Consensus 465 g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~-~~~-------P~giavDp~~g~ly~td~~-------------------- 516 (699)
T 1n7d_A 465 SNIYWTDSVLGTVSVADTKGVKRKTLFREQ-GSK-------PRAIVVDPVHGFMYWTDWG-------------------- 516 (699)
T ss_dssp SBCEECCTTTSCEEEEBSSSCCEEEECCCS-SCC-------CCCEECCSSSSCCEECCCS--------------------
T ss_pred CcEEEEeccCCeEEEEecCCCceEEEEeCC-CCC-------cceEEEccCCCcEEEcccC--------------------
Confidence 455555556788999998765432221111 111 2233355544432221110
Q ss_pred EEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec---CC
Q 001349 947 KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP---TL 1023 (1094)
Q Consensus 947 ~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~---~~ 1023 (1094)
..+.|..+++......... ...-...+.|+|++++..+..+....+.|..+|+........+. ..
T Consensus 517 ------~~~~I~~~~~dG~~~~~l~------~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~ 584 (699)
T 1n7d_A 517 ------TPAKIKKGGLNGVDIYSLV------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRL 584 (699)
T ss_dssp ------SSCCEEBCCSSSCCCCEES------CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSC
T ss_pred ------CCCeEEEEeCCCCCeeEEE------eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcC
Confidence 1145555555422211110 01123456799987544333333334589999986433222222 12
Q ss_pred CCEEEEEEeCCEEEE-EEcCCeEEEEECCCCcEEEEec
Q 001349 1024 SEVRAMVVSSELVYL-GCKGGTVEIWDQKRQIRIETLQ 1060 (1094)
Q Consensus 1024 ~~v~~l~~spd~l~s-gs~dg~I~vwd~~t~~~~~~l~ 1060 (1094)
....+|++..+.++. ....+.|..+|..+|+.+..+.
T Consensus 585 ~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 585 AHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp SSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred CCceEeEEECCEEEEEeCCCCeEEEEEccCCCceEEee
Confidence 345577778885554 4566899999999888877774
No 412
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=96.35 E-value=0.07 Score=57.60 Aligned_cols=222 Identities=10% Similarity=0.013 Sum_probs=139.5
Q ss_pred HhhhHhhhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCCChHHHHHh
Q 001349 315 INGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPSTRTLIEM 390 (1094)
Q Consensus 315 ~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~~~~~~~~ 390 (1094)
++.++..| .+.+..++..|+..|.++.. +..++.|+.+|+.. ...|+..|..+...+..+..
T Consensus 25 i~~L~~~L-~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~- 90 (280)
T 1oyz_A 25 DDELFRLL-DDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN- 90 (280)
T ss_dssp HHHHHHHT-TCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHH-
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchH-
Confidence 44455555 45788999999999998841 23568888999876 56788888888754432211
Q ss_pred hhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHH
Q 001349 391 DMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILL 470 (1094)
Q Consensus 391 ~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~ 470 (1094)
.++.|...+.+.. +. .-+.+++..|..+-... .......++.|+..+...+...|..|+..|.
T Consensus 91 -l~~~L~~~~~~d~-~~-----~vr~~a~~aL~~l~~~~----------~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~ 153 (280)
T 1oyz_A 91 -VFNILNNMALNDK-SA-----CVRATAIESTAQRCKKN----------PIYSPKIVEQSQITAFDKSTNVRRATAFAIS 153 (280)
T ss_dssp -HHHHHHHHHHHCS-CH-----HHHHHHHHHHHHHHHHC----------GGGHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCC-CH-----HHHHHHHHHHHHHhccC----------CcccHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 1123322222211 11 11455555565541100 1123467899999999999999998888776
Q ss_pred HHhhccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcC
Q 001349 471 RCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTAN 550 (1094)
Q Consensus 471 ~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~ 550 (1094)
..- +...+++|+.++...+...|..++..|..+-.. .-.....|+..|+...
T Consensus 154 ~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-----------------~~~~~~~L~~~l~d~~ 205 (280)
T 1oyz_A 154 VIN-----------DKATIPLLINLLKDPNGDVRNWAAFAININKYD-----------------NSDIRDCFVEMLQDKN 205 (280)
T ss_dssp TC--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC-----------------CHHHHHHHHHHTTCSC
T ss_pred hcC-----------CHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccC-----------------cHHHHHHHHHHhcCCC
Confidence 331 234678889888877777788787777655111 1122334555665555
Q ss_pred CccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhccc
Q 001349 551 HDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQG 609 (1094)
Q Consensus 551 ~~~~~~~a~~l~~l~~~~~~~~~~~~reea~~~~~~~l~~~~~~~~~~~~~~~~~~l~g 609 (1094)
++-+-.++..|.++. -+++++.|+..|.+.+ ++..|+.+|..++.
T Consensus 206 ~~vR~~A~~aL~~~~-----------~~~~~~~L~~~l~d~~---vr~~a~~aL~~i~~ 250 (280)
T 1oyz_A 206 EEVRIEAIIGLSYRK-----------DKRVLSVLCDELKKNT---VYDDIIEAAGELGD 250 (280)
T ss_dssp HHHHHHHHHHHHHTT-----------CGGGHHHHHHHHTSSS---CCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhC-----------CHhhHHHHHHHhcCcc---HHHHHHHHHHhcCc
Confidence 555666777777664 2468899999998754 67788999988865
No 413
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.34 E-value=0.00065 Score=73.39 Aligned_cols=47 Identities=23% Similarity=0.443 Sum_probs=37.9
Q ss_pred ceeccCccccccC----cEE----cCCcccccHHhHHHHHHhCC----------CCCCCCCcCCC
Q 001349 163 DFVCPITTHIFDD----PVT----LETGQTYERRAIQEWIERGN----------SSCPITRQKLS 209 (1094)
Q Consensus 163 ~~~CpIc~~~~~d----Pv~----~~cGhtfc~~ci~~~~~~~~----------~~CP~c~~~~~ 209 (1094)
...|+||...+.+ |-. ..|||.|-..||.+|++... ..||.|+++++
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 5679999999987 422 37999999999999997521 35999999875
No 414
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=96.27 E-value=0.023 Score=67.60 Aligned_cols=141 Identities=18% Similarity=0.152 Sum_probs=97.1
Q ss_pred hHHHHHHHHhcCCChHHHHHhhhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccc--------------
Q 001349 370 LLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVS-------------- 435 (1094)
Q Consensus 370 ~~~Aa~~l~~L~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~-------------- 435 (1094)
+-.|...|..++.....-+.-..+|+|+.+|++..+|. +-..++|+-|+..+......
T Consensus 39 RR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~--------e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~ 110 (651)
T 3grl_A 39 RRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDS--------EIIGYALDTLYNIISNDEEEEVEENSTRQSEDLG 110 (651)
T ss_dssp HHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCH--------HHHHHHHHHHHHHHCCC--------------CHH
T ss_pred HHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccH--------HHHHHHHHHHHHHhCCCCcccccccccccchHHH
Confidence 34455566666554444444445688888888765442 23333444443222111110
Q ss_pred -cch-hhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCc-chhhHhhh-cCchhHHHHHHhcCCchhHHHHHHH
Q 001349 436 -SIA-NTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGK-CRNSIADK-AELAPVMESFMAASDGERFEIVCFL 511 (1094)
Q Consensus 436 -~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~-~r~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~l 511 (1094)
.++ .-+-+.++|+.|+++|+..+...|..++-+|..++..... ..+.|... ++++.|+++|....+.-|..++.+|
T Consensus 111 ~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL 190 (651)
T 3grl_A 111 SQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLL 190 (651)
T ss_dssp HHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHH
Confidence 011 1234678899999999999999999999999888877766 88888865 8999999999888778888899999
Q ss_pred HHHHhcc
Q 001349 512 SELVKLN 518 (1094)
Q Consensus 512 ~el~~~~ 518 (1094)
.+|...+
T Consensus 191 ~~Lt~~n 197 (651)
T 3grl_A 191 QALTRSN 197 (651)
T ss_dssp HHHHTTC
T ss_pred HHHhcCC
Confidence 9998874
No 415
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.25 E-value=2.3 Score=51.48 Aligned_cols=216 Identities=10% Similarity=0.024 Sum_probs=121.3
Q ss_pred CCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEE-EEeCCCcEEEEECCCCceEEEEecccCccceeeeecCc
Q 001349 831 SDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLY-SGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNS 909 (1094)
Q Consensus 831 ~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~La-Sgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~ 909 (1094)
..+.|+..|+.+........+ ..-..+..|+|++.+..|+ +-..++.|..++++......+..... .. +.
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~-~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~-~~-------P~ 83 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPL-TGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGL-DY-------PE 83 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCC-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC-SC-------CC
T ss_pred eCCcEEEEECCCCCcceEEEc-CCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCC-CC-------cc
Confidence 567899999987632222222 2335678999999655554 55567888888887653322221110 11 12
Q ss_pred eEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEE-EEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEE
Q 001349 910 ILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYC-GCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQ 988 (1094)
Q Consensus 910 ~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~s-gs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~ 988 (1094)
.+++.+.+. .|+. -...+.|.+.++......... ...-.....++
T Consensus 84 GlAvD~~~~----------------------------~LY~tD~~~~~I~v~~~dG~~~~~l~------~~~l~~P~~ia 129 (628)
T 4a0p_A 84 GMAVDWLGK----------------------------NLYWADTGTNRIEVSKLDGQHRQVLV------WKDLDSPRALA 129 (628)
T ss_dssp EEEEETTTT----------------------------EEEEEETTTTEEEEEETTSTTCEEEE------CSSCCCEEEEE
T ss_pred eEEEEeCCC----------------------------EEEEEECCCCEEEEEecCCCcEEEEE------eCCCCCcccEE
Confidence 222433333 3333 233567777777644322111 12224568999
Q ss_pred EeCC-ccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEE-EcCCeEEEEECCCCcEEEEecccCC
Q 001349 989 VHNG-LVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLG-CKGGTVEIWDQKRQIRIETLQTGTS 1064 (1094)
Q Consensus 989 fs~~-~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sg-s~dg~I~vwd~~t~~~~~~l~~~h~ 1064 (1094)
++|. +.+..+-..+...|...++........+..-.....++++++ .|+.+ ...+.|..+|+..... ..+. ...
T Consensus 130 vdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~-~~l 207 (628)
T 4a0p_A 130 LDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIA-DDL 207 (628)
T ss_dssp EETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE-ECC
T ss_pred EccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEee-ccC
Confidence 9974 444444322124788888765443333445677899999985 55555 4568899999876543 3332 233
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1065 GKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1065 ~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
....++++.. +.+.++-...+.|...|
T Consensus 208 ~~P~glav~~-~~ly~tD~~~~~I~~~d 234 (628)
T 4a0p_A 208 PHPFGLTQYQ-DYIYWTDWSRRSIERAN 234 (628)
T ss_dssp SCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred CCceEEEEEC-CEEEEecCCCCEEEEEE
Confidence 3456787764 44444444567777665
No 416
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.24 E-value=0.44 Score=51.66 Aligned_cols=227 Identities=12% Similarity=0.135 Sum_probs=111.1
Q ss_pred cCcEEEEee-CC-----CCeEEEeCCcceee----cccCCCcEEEEEEeCCEEEEEECC-----CeEEEEecCCCc---c
Q 001349 784 EMVKVLSNG-HD-----SSADFWNHRELVHV----DSSENGKVLSIACFRDKIFSGHSD-----GTIKVWTGRGSI---L 845 (1094)
Q Consensus 784 d~~~l~s~s-~d-----g~I~vWd~~~~~~~----~~~h~~~V~~l~fspd~LaSgs~D-----g~I~vWd~~t~~---~ 845 (1094)
++..++.|| .+ ..+.+||..+.... .........++.+...+++.|+.+ ..+.+||..++. +
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W 93 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVW 93 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCee
Confidence 455667777 33 36777777632211 111112222333333366667654 468999999886 6
Q ss_pred eeEEEecccCCCeEEEEEecCCCEEEEEeCC-----CcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeE
Q 001349 846 HLIQQIREHTKAVTGLAILQSGEMLYSGSLD-----KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGI 920 (1094)
Q Consensus 846 ~~~~~l~~H~~~V~sv~fspdg~~LaSgs~D-----gtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l 920 (1094)
..+..+......-..+.+ ++.+++.|+.+ ..+.+||..+++...+........-.++ ...+++.
T Consensus 94 ~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~--------~~~~~~i- 162 (301)
T 2vpj_A 94 YSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGL--------VVASGVI- 162 (301)
T ss_dssp EEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEE--------EEETTEE-
T ss_pred EECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceE--------EEECCEE-
Confidence 655444322222222222 67777777654 3578888888765444322111100000 1112222
Q ss_pred EEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEc-----CCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccE
Q 001349 921 KVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQ-----DGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVY 995 (1094)
Q Consensus 921 ~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~-----Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~ 995 (1094)
++.|+. -..+..||+.+++........... .-.++....+..+
T Consensus 163 ---------------------------yv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-----~~~~~~~~~~~i~ 210 (301)
T 2vpj_A 163 ---------------------------YCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKR-----SGAGVALLNDHIY 210 (301)
T ss_dssp ---------------------------EEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCC-----BSCEEEEETTEEE
T ss_pred ---------------------------EEECCCCCCcccceEEEEeCCCCcEEeCCCCCccc-----ccceEEEECCEEE
Confidence 222332 246889999888765432111111 1123333444444
Q ss_pred EEEEECCC----CEEEEEECCCCeEEE--EecCCCCEEEEEEeCC-EEEEEEcC-----CeEEEEECCCCc
Q 001349 996 TASTSLDG----AAVKMWSTSNYNMVG--SLPTLSEVRAMVVSSE-LVYLGCKG-----GTVEIWDQKRQI 1054 (1094)
Q Consensus 996 las~s~Dg----~~I~iwd~~~~~~~~--~~~~~~~v~~l~~spd-~l~sgs~d-----g~I~vwd~~t~~ 1054 (1094)
+ .|+.++ ..+.+||+.+.+-.. .+.....-.+++...+ .++.|+.+ +.|.+||+.+.+
T Consensus 211 v-~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 211 V-VGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp E-ECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred E-EeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 4 443332 368999998765322 2222211122333344 55556544 468889987754
No 417
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.20 E-value=0.33 Score=53.38 Aligned_cols=159 Identities=12% Similarity=0.052 Sum_probs=102.9
Q ss_pred CCCceEEEEeC--CEEEEEE-cCCeEEEEECCCCceeEEeccceeecCC-CCCeEEEEE---eCCccEEEEEEC------
Q 001349 935 SKYPKCLALVQ--GKVYCGC-QDGAIQEIDLATGTFATIQTGHRKLLGK-ANPVHALQV---HNGLVYTASTSL------ 1001 (1094)
Q Consensus 935 ~~~v~~l~~s~--~~l~sgs-~Dg~I~iwDl~~~~~~~~~~~~~~~~~h-~~~V~sl~f---s~~~~~las~s~------ 1001 (1094)
.-+..+..|++ +.++.++ ..++|..||...+.............+. ...+..+.+ .+++.+++....
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF 91 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence 34556677764 6777777 6899999999866544321100000011 113578999 677777775431
Q ss_pred -------CCCEEEEEECC---CCeEEEEecC-------------C-CCEEEEEEeCC--EEEEEEcC-CeEEEEECCCCc
Q 001349 1002 -------DGAAVKMWSTS---NYNMVGSLPT-------------L-SEVRAMVVSSE--LVYLGCKG-GTVEIWDQKRQI 1054 (1094)
Q Consensus 1002 -------Dg~~I~iwd~~---~~~~~~~~~~-------------~-~~v~~l~~spd--~l~sgs~d-g~I~vwd~~t~~ 1054 (1094)
+ +.|..||+. +++.+....- . .....+++.++ ..++++.. +.|..++.....
T Consensus 92 ~g~~~~g~-~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~ 170 (334)
T 2p9w_A 92 ADQSSHGA-SSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT 170 (334)
T ss_dssp TSCCSSSC-CEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC
T ss_pred cccccCCC-CEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE
Confidence 3 489999999 7877665541 1 24788999887 55567777 888877776443
Q ss_pred EEEEe-cc---cCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1055 RIETL-QT---GTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1055 ~~~~l-~~---~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
....+ .. ......+.|+++|||+.|++...+|.+..+|+.
T Consensus 171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 22111 11 111236799999999999988779999998863
No 418
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.19 E-value=0.53 Score=51.06 Aligned_cols=228 Identities=13% Similarity=0.179 Sum_probs=109.8
Q ss_pred ccCcEEEEeeCC----CCeEEEeCCcceee----cccCCCcEEEEEEeCCEEEEEECC-----CeEEEEecCCCcceeEE
Q 001349 783 FEMVKVLSNGHD----SSADFWNHRELVHV----DSSENGKVLSIACFRDKIFSGHSD-----GTIKVWTGRGSILHLIQ 849 (1094)
Q Consensus 783 ~d~~~l~s~s~d----g~I~vWd~~~~~~~----~~~h~~~V~~l~fspd~LaSgs~D-----g~I~vWd~~t~~~~~~~ 849 (1094)
.++..++.||.+ ..+..||..+.... .......-..+.+...+++.|+.+ ..+.+||..++.+..+.
T Consensus 14 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 93 (302)
T 2xn4_A 14 LPKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA 93 (302)
T ss_dssp -CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred CCCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence 345566677754 35667776632111 111111112233333366666654 35889999988666554
Q ss_pred EecccCCCeEEEEEecCCCEEEEEeCCC-----cEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEE
Q 001349 850 QIREHTKAVTGLAILQSGEMLYSGSLDK-----TARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHL 924 (1094)
Q Consensus 850 ~l~~H~~~V~sv~fspdg~~LaSgs~Dg-----tI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~ 924 (1094)
.+......-..+.+ ++.+++.|+.++ .+.+||..+++...+........-.++ ...+++.
T Consensus 94 ~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~--------~~~~~~i----- 158 (302)
T 2xn4_A 94 NMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGV--------GVVGGLL----- 158 (302)
T ss_dssp CCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEE--------EEETTEE-----
T ss_pred CCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceE--------EEECCEE-----
Confidence 44322222222222 677777777653 467788887754443222111000000 1112221
Q ss_pred eCCeEEEEcCCCCceEEEEeCCEEEEEEc-------CCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEE
Q 001349 925 RNGKTKLLNSSKYPKCLALVQGKVYCGCQ-------DGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTA 997 (1094)
Q Consensus 925 ~~g~i~l~~~~~~v~~l~~s~~~l~sgs~-------Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~la 997 (1094)
++.|+. -..+..||+.+++............+ .++....+..+++
T Consensus 159 -----------------------yv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-----~~~~~~~~~iyv~ 210 (302)
T 2xn4_A 159 -----------------------YAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSG-----AGVGVLNNLLYAV 210 (302)
T ss_dssp -----------------------EEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBS-----CEEEEETTEEEEE
T ss_pred -----------------------EEEeCCCCCCCccccEEEEEeCCCCcEEECCCCcccccc-----ccEEEECCEEEEE
Confidence 222221 24588999988876543211111111 2333445554544
Q ss_pred EEECCC----CEEEEEECCCCeEEE--EecCCCCEEEEEEeCC-EEEEEEcC-----CeEEEEECCCCc
Q 001349 998 STSLDG----AAVKMWSTSNYNMVG--SLPTLSEVRAMVVSSE-LVYLGCKG-----GTVEIWDQKRQI 1054 (1094)
Q Consensus 998 s~s~Dg----~~I~iwd~~~~~~~~--~~~~~~~v~~l~~spd-~l~sgs~d-----g~I~vwd~~t~~ 1054 (1094)
|+.++ ..+.+||..+.+-.. .+.....-.+++...+ .++.|+.+ ..+.+||+.+.+
T Consensus 211 -GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 211 -GGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp -CCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred -CCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 43332 368999998764322 2222111122333344 55566544 358999988764
No 419
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=96.17 E-value=0.13 Score=52.35 Aligned_cols=146 Identities=21% Similarity=0.257 Sum_probs=100.8
Q ss_pred HhhhHhhhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCCChHHHHHh
Q 001349 315 INGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPSTRTLIEM 390 (1094)
Q Consensus 315 ~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~~~~~~~~ 390 (1094)
...+++.| .+.+..+...|+..|..+.. ...++.|+.+|+.+ ...|+.+|..+...
T Consensus 16 ~~~~i~~L-~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~------- 75 (201)
T 3ltj_A 16 VEMYIKNL-QDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDEDAWVRRAAADALGQIGDE------- 75 (201)
T ss_dssp HHHHHHHT-TCSCHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-------
T ss_pred hHHHHHHh-cCCCHHHHHHHHHHHHhcCC------------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-------
Confidence 44455555 55789999999999998732 24678899999776 55677777766432
Q ss_pred hhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHH
Q 001349 391 DMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILL 470 (1094)
Q Consensus 391 ~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~ 470 (1094)
+.++.|+..|...+.. -+.+|+..|..+ .....++.|+..+...+...|..|+..|.
T Consensus 76 ~~~~~L~~~l~d~~~~-------vr~~a~~aL~~~----------------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~ 132 (201)
T 3ltj_A 76 RAVEPLIKALKDEDGW-------VRQSAAVALGQI----------------GDERAVEPLIKALKDEDWFVRIAAAFALG 132 (201)
T ss_dssp GGHHHHHHHTTCSSHH-------HHHHHHHHHHHH----------------CCGGGHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHH-------HHHHHHHHHHHh----------------CcHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3458888877653211 145555555543 33568899999999999999999888776
Q ss_pred HHhhccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHHH
Q 001349 471 RCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSEL 514 (1094)
Q Consensus 471 ~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el 514 (1094)
.. .+...++.|++++...+...|..|+..|..+
T Consensus 133 ~~-----------~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 133 EI-----------GDERAVEPLIKALKDEDGWVRQSAADALGEI 165 (201)
T ss_dssp HH-----------TCGGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred Hh-----------CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 54 1234567788888776667777777777665
No 420
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.16 E-value=1.1 Score=48.62 Aligned_cols=236 Identities=11% Similarity=0.069 Sum_probs=112.2
Q ss_pred CcEEEEeeCC--CCeEEEeCCcceee----cccCCCcEEEEEEeCCEEEEEECC----CeEEEEecCCCcceeEEEeccc
Q 001349 785 MVKVLSNGHD--SSADFWNHRELVHV----DSSENGKVLSIACFRDKIFSGHSD----GTIKVWTGRGSILHLIQQIREH 854 (1094)
Q Consensus 785 ~~~l~s~s~d--g~I~vWd~~~~~~~----~~~h~~~V~~l~fspd~LaSgs~D----g~I~vWd~~t~~~~~~~~l~~H 854 (1094)
+..++.||.+ ..+.+||..+.... .......-.++.+...+++.|+.+ ..+.+||..++.+..+..+...
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 91 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP 91 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence 3455666654 56777777632211 111112223333333366667654 6788999999876665544322
Q ss_pred CCCeEEEEEecCCCEEEEEeCC------CcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCe
Q 001349 855 TKAVTGLAILQSGEMLYSGSLD------KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGK 928 (1094)
Q Consensus 855 ~~~V~sv~fspdg~~LaSgs~D------gtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~ 928 (1094)
...-..+.+ ++.+++.|+.+ ..+.+||..+++...+........-.++ ...+++.++++..++.
T Consensus 92 r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~--------~~~~~~iyv~GG~~~~ 161 (306)
T 3ii7_A 92 RDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGM--------VEANGLIYVCGGSLGN 161 (306)
T ss_dssp CBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEE--------EEETTEEEEECCEESC
T ss_pred ccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEE--------EEECCEEEEECCCCCC
Confidence 222222222 67777777765 4588889888764443221111000000 1112221111110000
Q ss_pred EEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCC---CE
Q 001349 929 TKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG---AA 1005 (1094)
Q Consensus 929 i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg---~~ 1005 (1094)
.. .+..-..+.+||+.+++.......... ..-.++....+..+++.|.... ..
T Consensus 162 -------~~------------~~~~~~~~~~yd~~~~~W~~~~~~p~~-----r~~~~~~~~~~~i~v~GG~~~~~~~~~ 217 (306)
T 3ii7_A 162 -------NV------------SGRVLNSCEVYDPATETWTELCPMIEA-----RKNHGLVFVKDKIFAVGGQNGLGGLDN 217 (306)
T ss_dssp -------TT------------TCEECCCEEEEETTTTEEEEECCCSSC-----CBSCEEEEETTEEEEECCEETTEEBCC
T ss_pred -------CC------------cccccceEEEeCCCCCeEEECCCccch-----hhcceEEEECCEEEEEeCCCCCCCCce
Confidence 00 000135688999988865533211111 1112333345555544432211 26
Q ss_pred EEEEECCCCeEE--EEecCC-CCEEEEEEeCCEEEEEEcC-----CeEEEEECCCCc
Q 001349 1006 VKMWSTSNYNMV--GSLPTL-SEVRAMVVSSELVYLGCKG-----GTVEIWDQKRQI 1054 (1094)
Q Consensus 1006 I~iwd~~~~~~~--~~~~~~-~~v~~l~~spd~l~sgs~d-----g~I~vwd~~t~~ 1054 (1094)
+.+||..+.+-. ..+... .....+.+....++.|+.+ +.+.+||+.+.+
T Consensus 218 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 218 VEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp EEEEETTTTEEEECCCCSCCBSCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred EEEeeCCCCcEEECCCCCCCccceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 889998875422 222221 2223333333366666643 578999988754
No 421
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.10 E-value=0.43 Score=51.72 Aligned_cols=214 Identities=12% Similarity=0.186 Sum_probs=104.5
Q ss_pred CeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCC-----CcEEEEECCCCc---eEEEEecccCccceee
Q 001349 833 GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD-----KTARVWSIGNEE---IHCVQVHDIKDQIQNL 904 (1094)
Q Consensus 833 g~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~D-----gtI~vWdi~~~~---~~~~~~~~~~~~V~~v 904 (1094)
..+.+||..++.+..+..+.........+ ..++.+++.|+.+ ..+.+||..+++ ...+........-.++
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~ 108 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASV--SLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGA 108 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEE--EETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEE--EECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeE
Confidence 46888999888655444332211111222 2366777777755 358888888865 4443221111000000
Q ss_pred eecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEc-----CCeEEEEECCCCceeEEeccceeecC
Q 001349 905 AVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQ-----DGAIQEIDLATGTFATIQTGHRKLLG 979 (1094)
Q Consensus 905 ~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~-----Dg~I~iwDl~~~~~~~~~~~~~~~~~ 979 (1094)
...+++. ++.|+. ...+.+||+.+++............+
T Consensus 109 --------~~~~~~l----------------------------yv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 152 (301)
T 2vpj_A 109 --------TTLGDMI----------------------------YVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREG 152 (301)
T ss_dssp --------EEETTEE----------------------------EEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBS
T ss_pred --------EEECCEE----------------------------EEEcccCCCcccceEEEEcCCCCeEEECCCCCCCccc
Confidence 1112221 222322 24688999988776543211111111
Q ss_pred CCCCeEEEEEeCCccEEEEEECCC----CEEEEEECCCCeEEEE--ecCCCCEEEEEEeCC-EEEEEEcC-----CeEEE
Q 001349 980 KANPVHALQVHNGLVYTASTSLDG----AAVKMWSTSNYNMVGS--LPTLSEVRAMVVSSE-LVYLGCKG-----GTVEI 1047 (1094)
Q Consensus 980 h~~~V~sl~fs~~~~~las~s~Dg----~~I~iwd~~~~~~~~~--~~~~~~v~~l~~spd-~l~sgs~d-----g~I~v 1047 (1094)
.++....+..+ +.|+.++ ..+.+||..+.+-... +.....-.+++...+ .++.|+.+ +.+.+
T Consensus 153 -----~~~~~~~~~iy-v~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~ 226 (301)
T 2vpj_A 153 -----AGLVVASGVIY-CLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEA 226 (301)
T ss_dssp -----CEEEEETTEEE-EECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEE
T ss_pred -----ceEEEECCEEE-EECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEE
Confidence 22333344444 4443332 3688999877643222 222222223333345 55556553 57999
Q ss_pred EECCCCcEEEEecccCCc--ceEEEEEcCCCCEEEEEeCCC-----cEEEEeC
Q 001349 1048 WDQKRQIRIETLQTGTSG--KVQCMALDDNEEFLVIGTSDG-----RIQAWGL 1093 (1094)
Q Consensus 1048 wd~~t~~~~~~l~~~h~~--~I~~l~~Spdg~~L~sgs~DG-----~I~iWdl 1093 (1094)
||+.+.+-.. +...... ....+. -++++++.|+.++ .|.+||+
T Consensus 227 yd~~~~~W~~-~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~ 276 (301)
T 2vpj_A 227 YNIRTDSWTT-VTSMTTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDP 276 (301)
T ss_dssp EETTTTEEEE-ECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEET
T ss_pred EeCCCCcEEE-CCCCCCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcC
Confidence 9998765322 2111111 112222 2677888887663 4677775
No 422
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.08 E-value=0.85 Score=49.40 Aligned_cols=224 Identities=12% Similarity=0.198 Sum_probs=108.7
Q ss_pred EEEEEECC----CeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCC-----CcEEEEECCCCceEEEEec
Q 001349 825 KIFSGHSD----GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD-----KTARVWSIGNEEIHCVQVH 895 (1094)
Q Consensus 825 ~LaSgs~D----g~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~D-----gtI~vWdi~~~~~~~~~~~ 895 (1094)
+++.|+.+ ..+.+||..++.+..+..+...... .+++. -++.+++.|+.+ ..+.+||..+++...+...
T Consensus 18 i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~ 95 (302)
T 2xn4_A 18 MVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCR-AGMVY-MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANM 95 (302)
T ss_dssp EEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEE-ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCC
T ss_pred EEEECCCCCCCCCcEEEEcCcCCcEeEcccCCccccc-ceEEE-ECCEEEEEeCcCCCccccceEEECCCCCceeeCCCC
Confidence 45555543 4688899988865544333221111 12222 266777777754 3578888888764443322
Q ss_pred ccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcC-----CeEEEEECCCCceeEE
Q 001349 896 DIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQD-----GAIQEIDLATGTFATI 970 (1094)
Q Consensus 896 ~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~D-----g~I~iwDl~~~~~~~~ 970 (1094)
.....-.++ ...+++. ++.|+.+ ..+.+||+.+++....
T Consensus 96 p~~r~~~~~--------~~~~~~i----------------------------yv~GG~~~~~~~~~~~~~d~~~~~W~~~ 139 (302)
T 2xn4_A 96 RDRRSTLGA--------AVLNGLL----------------------------YAVGGFDGSTGLSSVEAYNIKSNEWFHV 139 (302)
T ss_dssp SSCCBSCEE--------EEETTEE----------------------------EEEEEECSSCEEEEEEEEETTTTEEEEE
T ss_pred CccccceEE--------EEECCEE----------------------------EEEcCCCCCccCceEEEEeCCCCeEeec
Confidence 111100000 1112222 2333333 3578899988776543
Q ss_pred eccceeecCCCCCeEEEEEeCCccEEEEEECCC-----CEEEEEECCCCeEEE--EecCCCCEEEEEEeCC-EEEEEEcC
Q 001349 971 QTGHRKLLGKANPVHALQVHNGLVYTASTSLDG-----AAVKMWSTSNYNMVG--SLPTLSEVRAMVVSSE-LVYLGCKG 1042 (1094)
Q Consensus 971 ~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg-----~~I~iwd~~~~~~~~--~~~~~~~v~~l~~spd-~l~sgs~d 1042 (1094)
...... ..-.+++...+..+++.|.... ..+.+||..+.+-.. .+.....-.+++...+ .++.|+.+
T Consensus 140 ~~~p~~-----r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 214 (302)
T 2xn4_A 140 APMNTR-----RSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHD 214 (302)
T ss_dssp CCCSSC-----CBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBS
T ss_pred CCCCCc-----ccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCC
Confidence 211111 1112333445555555443211 258899988764322 2222211223333445 55556543
Q ss_pred -----CeEEEEECCCCcEEEEecccCCcce-EEEEEcCCCCEEEEEeCCC-----cEEEEeC
Q 001349 1043 -----GTVEIWDQKRQIRIETLQTGTSGKV-QCMALDDNEEFLVIGTSDG-----RIQAWGL 1093 (1094)
Q Consensus 1043 -----g~I~vwd~~t~~~~~~l~~~h~~~I-~~l~~Spdg~~L~sgs~DG-----~I~iWdl 1093 (1094)
+.+.+||+.+.+-.. +........ .+++ ..++++++.|+.++ .|.+||+
T Consensus 215 ~~~~~~~~~~yd~~~~~W~~-~~~~~~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~ 274 (302)
T 2xn4_A 215 GPLVRKSVEVYDPTTNAWRQ-VADMNMCRRNAGVC-AVNGLLYVVGGDDGSCNLASVEYYNP 274 (302)
T ss_dssp SSSBCCCEEEEETTTTEEEE-ECCCSSCCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEET
T ss_pred CCcccceEEEEeCCCCCEee-CCCCCCccccCeEE-EECCEEEEECCcCCCcccccEEEEcC
Confidence 479999998765322 211111111 1122 23677888888664 3778875
No 423
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.05 E-value=1.8 Score=52.34 Aligned_cols=226 Identities=9% Similarity=0.009 Sum_probs=120.1
Q ss_pred CCCCeEEEeCCcc---eeecccCCCcEEEEEEeCC--EEE-EEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecC
Q 001349 793 HDSSADFWNHREL---VHVDSSENGKVLSIACFRD--KIF-SGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS 866 (1094)
Q Consensus 793 ~dg~I~vWd~~~~---~~~~~~h~~~V~~l~fspd--~La-Sgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspd 866 (1094)
..+.|+..++... .......-+.+.+++|++. .|+ +-...+.|..++..+.. .....+...-.....+++.+.
T Consensus 16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~-~~~~v~~~~~~~P~GlAvD~~ 94 (619)
T 3s94_A 16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE-SVQNVVVSGLLSPDGLACDWL 94 (619)
T ss_dssp CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CEEEECSSCSCEEEEEEETT
T ss_pred ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCC-ceEEEEeCCCCCcCeEEEEec
Confidence 4566777777632 2223344566889999973 444 44557889999987652 112233333356889999985
Q ss_pred CC-EEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC
Q 001349 867 GE-MLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ 945 (1094)
Q Consensus 867 g~-~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~ 945 (1094)
+. +.++-...+.|.+.+.++.....+.... -. .|..+++.|.+..+.+..+.
T Consensus 95 ~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~-l~-------~P~~Iavdp~~g~ly~tD~g------------------- 147 (619)
T 3s94_A 95 GEKLYWTDSETNRIEVSNLDGSLRKVLFWQE-LD-------QPRAIALDPSSGFMYWTDWG------------------- 147 (619)
T ss_dssp TTEEEEEETTTTEEEEEETTSCSCEEEECSS-CS-------CCCCEEEETTTTEEEEEECS-------------------
T ss_pred CCEEEEEeCCCCEEEEEECCCCCEEEEEeCC-CC-------CCceEEEecCCCeEEEeccC-------------------
Confidence 55 4555556789999999875433332111 11 12333466655444333321
Q ss_pred CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCC
Q 001349 946 GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLS 1024 (1094)
Q Consensus 946 ~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~ 1024 (1094)
..+.|...++......... ...-...+.++++++...+..+......|..+|+.......... ...
T Consensus 148 -------~~~~I~r~~~dG~~~~~l~------~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~ 214 (619)
T 3s94_A 148 -------EVPKIERAGMDGSSRFIII------NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLP 214 (619)
T ss_dssp -------SSCEEEEEETTSCSCEEEE------CSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC--------
T ss_pred -------CCCEEEEEECCCCceEEEE------eCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCC
Confidence 1234444444322221111 11224568899987544444444444588888886543322222 222
Q ss_pred CEEEEEEeCCEEEEEE-cCCeEEEEECCCCcEEEEe
Q 001349 1025 EVRAMVVSSELVYLGC-KGGTVEIWDQKRQIRIETL 1059 (1094)
Q Consensus 1025 ~v~~l~~spd~l~sgs-~dg~I~vwd~~t~~~~~~l 1059 (1094)
...++++.++.++.+. .++.|...|..+++....+
T Consensus 215 ~P~gi~~~~~~ly~td~~~~~V~~~d~~tg~~~~~i 250 (619)
T 3s94_A 215 HPFALTLFEDILYWTDWSTHSILACNKYTGEGLREI 250 (619)
T ss_dssp -CCCEEESSSEEEEECTTTCSEEEEESSSCCCCEEC
T ss_pred CceEEEEeCCEEEEecCCCCEEEEEECCCCcccEEE
Confidence 3457788888666554 5678999998877654443
No 424
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=96.03 E-value=0.14 Score=52.55 Aligned_cols=149 Identities=21% Similarity=0.253 Sum_probs=103.6
Q ss_pred hHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCCChHHH
Q 001349 312 PAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPSTRTL 387 (1094)
Q Consensus 312 ~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~~~~~ 387 (1094)
+..++.+++.|- +.+..+...++..|..+.. ...++.|+.+|+.. ...|+.+|..+..
T Consensus 18 ~~~~~~L~~~L~-~~~~~vR~~A~~~L~~~~~------------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQ-DDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----- 79 (211)
T ss_dssp GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----
T ss_pred HhHHHHHHHHHc-CCCHHHHHHHHHHHHHhCC------------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-----
Confidence 344555666654 6789999999999998732 24678899999876 5567777777653
Q ss_pred HHhhhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHH
Q 001349 388 IEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVG 467 (1094)
Q Consensus 388 ~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 467 (1094)
-+.++.|+..|...+.. -+.+|+..|..+ .....++.|++.++..+...|..|+.
T Consensus 80 --~~~~~~L~~~l~~~~~~-------vr~~a~~aL~~~----------------~~~~~~~~L~~~l~d~~~~vr~~a~~ 134 (211)
T 3ltm_A 80 --ERAVEPLIKALKDEDGW-------VRQSAAVALGQI----------------GDERAVEPLIKALKDEDWFVRIAAAF 134 (211)
T ss_dssp --GGGHHHHHHHTTCSSHH-------HHHHHHHHHHHH----------------CCGGGHHHHHHHTTCSSHHHHHHHHH
T ss_pred --HHHHHHHHHHHcCCCHH-------HHHHHHHHHHHh----------------CcHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 13448888887653211 145555555544 23568899999999999999999888
Q ss_pred HHHHHhhccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHHH
Q 001349 468 ILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSEL 514 (1094)
Q Consensus 468 ~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el 514 (1094)
.|... .+...++.|+.++...+...|..++..|..+
T Consensus 135 aL~~~-----------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 170 (211)
T 3ltm_A 135 ALGEI-----------GDERAVEPLIKALKDEDGWVRQSAADALGEI 170 (211)
T ss_dssp HHHHH-----------CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHc-----------CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 87654 1234567788888766767777777777665
No 425
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.95 E-value=0.0023 Score=58.03 Aligned_cols=33 Identities=12% Similarity=0.259 Sum_probs=28.9
Q ss_pred CceeccCccc-cccCcEE--cCCcccccHHhHHHHH
Q 001349 162 KDFVCPITTH-IFDDPVT--LETGQTYERRAIQEWI 194 (1094)
Q Consensus 162 ~~~~CpIc~~-~~~dPv~--~~cGhtfc~~ci~~~~ 194 (1094)
+++.|+||.+ ++.+||. +.|||+||+.|++.+.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHh
Confidence 3789999996 5889999 8999999999999843
No 426
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=95.92 E-value=0.94 Score=49.16 Aligned_cols=223 Identities=13% Similarity=0.128 Sum_probs=110.5
Q ss_pred EEEEEEC--CCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCC----CcEEEEECCCCceEEEEecccC
Q 001349 825 KIFSGHS--DGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD----KTARVWSIGNEEIHCVQVHDIK 898 (1094)
Q Consensus 825 ~LaSgs~--Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~D----gtI~vWdi~~~~~~~~~~~~~~ 898 (1094)
+++.|+. ...+.+||..++.+..+..+......-..+. -++.+++.|+.+ ..+.+||..+++...+......
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 91 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP 91 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence 4555654 3678899999886655544332222222222 266777777755 5678888888764443322111
Q ss_pred ccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcC------CeEEEEECCCCceeEEec
Q 001349 899 DQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQD------GAIQEIDLATGTFATIQT 972 (1094)
Q Consensus 899 ~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~D------g~I~iwDl~~~~~~~~~~ 972 (1094)
..-..+ ...+++. ++.|+.+ ..+.+||+.+++....-.
T Consensus 92 r~~~~~--------~~~~~~i----------------------------yv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~ 135 (306)
T 3ii7_A 92 RDSLAA--------CAAEGKI----------------------------YTSGGSEVGNSALYLFECYDTRTESWHTKPS 135 (306)
T ss_dssp CBSCEE--------EEETTEE----------------------------EEECCBBTTBSCCCCEEEEETTTTEEEEECC
T ss_pred ccceeE--------EEECCEE----------------------------EEECCCCCCCcEeeeEEEEeCCCCceEeCCC
Confidence 000000 1112221 2333333 468899998887553321
Q ss_pred cceeecCCCCCeEEEEEeCCccEEEEEECC-------CCEEEEEECCCCeEEE--EecCCCCEEEEEEeCC-EEEEEEcC
Q 001349 973 GHRKLLGKANPVHALQVHNGLVYTASTSLD-------GAAVKMWSTSNYNMVG--SLPTLSEVRAMVVSSE-LVYLGCKG 1042 (1094)
Q Consensus 973 ~~~~~~~h~~~V~sl~fs~~~~~las~s~D-------g~~I~iwd~~~~~~~~--~~~~~~~v~~l~~spd-~l~sgs~d 1042 (1094)
....... .+++...+..+++.|... -..+.+||..+.+-.. .+.....-.+++...+ .++.|+.+
T Consensus 136 ~p~~r~~-----~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~ 210 (306)
T 3ii7_A 136 MLTQRCS-----HGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQN 210 (306)
T ss_dssp CSSCCBS-----CEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEE
T ss_pred CcCCcce-----eEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCC
Confidence 1111111 223334555555544321 1258899998764322 2222222223333345 45555432
Q ss_pred -----CeEEEEECCCCcEEE--EecccCCcceEEEEEcCCCCEEEEEeCC-----CcEEEEeC
Q 001349 1043 -----GTVEIWDQKRQIRIE--TLQTGTSGKVQCMALDDNEEFLVIGTSD-----GRIQAWGL 1093 (1094)
Q Consensus 1043 -----g~I~vwd~~t~~~~~--~l~~~h~~~I~~l~~Spdg~~L~sgs~D-----G~I~iWdl 1093 (1094)
..+.+||+.+.+-.. .+.. .......+.+ ++++++.|+.+ ..+.+||+
T Consensus 211 ~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~ 270 (306)
T 3ii7_A 211 GLGGLDNVEYYDIKLNEWKMVSPMPW-KGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNT 270 (306)
T ss_dssp TTEEBCCEEEEETTTTEEEECCCCSC-CBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEET
T ss_pred CCCCCceEEEeeCCCCcEEECCCCCC-CccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcC
Confidence 468999998764221 1211 1112223333 67788888855 45777775
No 427
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.88 E-value=1.5 Score=49.08 Aligned_cols=69 Identities=14% Similarity=0.157 Sum_probs=42.8
Q ss_pred ecCCCCEEEEEEeC--------C-EEEEEEcCCeEEEEECCCCcEEEE--ecccCCcceEEEEEcCCCCEEEEEe-CCCc
Q 001349 1020 LPTLSEVRAMVVSS--------E-LVYLGCKGGTVEIWDQKRQIRIET--LQTGTSGKVQCMALDDNEEFLVIGT-SDGR 1087 (1094)
Q Consensus 1020 ~~~~~~v~~l~~sp--------d-~l~sgs~dg~I~vwd~~t~~~~~~--l~~~h~~~I~~l~~Spdg~~L~sgs-~DG~ 1087 (1094)
+.++..+..+.|.. . ++++....+.|...++..++.... +.......+..+++.|||.+.++.. .+|.
T Consensus 267 ~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~ 346 (353)
T 2g8s_A 267 WKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGE 346 (353)
T ss_dssp ESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEE
T ss_pred eCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCE
Confidence 34455677888853 2 455445667888888776544332 2223335799999999998666543 4554
Q ss_pred E
Q 001349 1088 I 1088 (1094)
Q Consensus 1088 I 1088 (1094)
|
T Consensus 347 I 347 (353)
T 2g8s_A 347 L 347 (353)
T ss_dssp E
T ss_pred E
Confidence 3
No 428
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=95.81 E-value=0.81 Score=50.28 Aligned_cols=213 Identities=11% Similarity=0.024 Sum_probs=110.0
Q ss_pred cCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCceEEEEecccC----c---cceeeeecCceEEE---eeCCCeEEE
Q 001349 854 HTKAVTGLAILQSGEMLYSGS-LDKTARVWSIGNEEIHCVQVHDIK----D---QIQNLAVSNSILCF---IPQGAGIKV 922 (1094)
Q Consensus 854 H~~~V~sv~fspdg~~LaSgs-~DgtI~vWdi~~~~~~~~~~~~~~----~---~V~~v~~~~~~~~f---spdg~~l~~ 922 (1094)
..-.-.+++|++....++.++ ..++|..||..++....+ ..+.- . .+.. +.+ .|+|+.+++
T Consensus 11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sG-------l~~~~~D~~grL~vv 82 (334)
T 2p9w_A 11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSG-------LSLLTHDNSKRLFAV 82 (334)
T ss_dssp TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEE-------EEESSSSSCCEEEEE
T ss_pred cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeE-------EEEeccCCCCcEEEE
Confidence 333445788988555555555 789999999986643333 22110 0 1122 224 344433221
Q ss_pred EEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECC---CCceeEEeccceeec------C-CCCCeEEEEEeCC
Q 001349 923 HLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLA---TGTFATIQTGHRKLL------G-KANPVHALQVHNG 992 (1094)
Q Consensus 923 ~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~---~~~~~~~~~~~~~~~------~-h~~~V~sl~fs~~ 992 (1094)
...... |+.. +.. -+.++.|..||+. +++......-..... + -......++..++
T Consensus 83 ~~~~~a---f~~~---------g~~---~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~ 147 (334)
T 2p9w_A 83 MKNAKS---FNFA---------DQS---SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRD 147 (334)
T ss_dssp EEETTT---TCTT---------SCC---SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTT
T ss_pred Eccccc---cccc---------ccc---cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCC
Confidence 110000 0000 000 0136789999998 777654322110000 1 1134788999999
Q ss_pred ccEEEEEECC-CCEEEEEECCCCeEEEEec-------CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcE--EEEec
Q 001349 993 LVYTASTSLD-GAAVKMWSTSNYNMVGSLP-------TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIR--IETLQ 1060 (1094)
Q Consensus 993 ~~~las~s~D-g~~I~iwd~~~~~~~~~~~-------~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~--~~~l~ 1060 (1094)
+...++++.. + .|..++.... .+..+. .....+.|+++|+ .|++...+|.+..+|+.+... +..-.
T Consensus 148 GnaYVt~s~~~~-~I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~ 225 (334)
T 2p9w_A 148 GNSYVAFALGMP-AIARVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKI 225 (334)
T ss_dssp SCEEEEEEESSC-EEEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEE
T ss_pred CCEEEeCCCCCC-eEEEEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccc
Confidence 8888877765 5 6665555432 222221 1223679999987 566665599999999885433 21100
Q ss_pred ccC---CcceEE-EEEcCCCCE-EEEEeCCCcEEEE
Q 001349 1061 TGT---SGKVQC-MALDDNEEF-LVIGTSDGRIQAW 1091 (1094)
Q Consensus 1061 ~~h---~~~I~~-l~~Spdg~~-L~sgs~DG~I~iW 1091 (1094)
.+. ...... +..-.+|+. +++.+..+.+.+.
T Consensus 226 ~G~~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~ 261 (334)
T 2p9w_A 226 NGDFGTLSGTEKIVTVPVGNESVLVGARAPYAISFR 261 (334)
T ss_dssp SSCCCCCTTEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred cCCcccccCcccccccccCCEEEEEEcCCCCEEEEE
Confidence 021 112334 334457777 5555556655543
No 429
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.64 E-value=1.7 Score=47.44 Aligned_cols=123 Identities=10% Similarity=0.115 Sum_probs=60.0
Q ss_pred CeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCC----CEEEEEECCCCeEE--EEecCCCCEEE
Q 001349 955 GAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG----AAVKMWSTSNYNMV--GSLPTLSEVRA 1028 (1094)
Q Consensus 955 g~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg----~~I~iwd~~~~~~~--~~~~~~~~v~~ 1028 (1094)
..+.+||+.+++............ -.+++...+..+++.|..++ ..+.+||..+.+-. ..+.....-.+
T Consensus 117 ~~~~~~d~~~~~W~~~~~~p~~r~-----~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~ 191 (315)
T 4asc_A 117 DSVMCYDRLSFKWGESDPLPYVVY-----GHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFG 191 (315)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCB-----SCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCE
T ss_pred ceEEEECCCCCcEeECCCCCCccc-----ceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceE
Confidence 468899998876543211111111 12333445555555443121 26889998875422 22222211122
Q ss_pred EEEeCC-EEEEEEcCC-----eEEEEECCCCcEEEEecccCCc--ceEEEEEcCCCCEEEEEeCC
Q 001349 1029 MVVSSE-LVYLGCKGG-----TVEIWDQKRQIRIETLQTGTSG--KVQCMALDDNEEFLVIGTSD 1085 (1094)
Q Consensus 1029 l~~spd-~l~sgs~dg-----~I~vwd~~t~~~~~~l~~~h~~--~I~~l~~Spdg~~L~sgs~D 1085 (1094)
++...+ .++.|+.++ .+.+||+.+.+-.. +...... ....+.+ ++++++.|+.+
T Consensus 192 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~~~~~~~--~~~l~v~GG~~ 253 (315)
T 4asc_A 192 ATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAP-FEAFPQERSSLSLVSL--VGTLYAIGGFA 253 (315)
T ss_dssp EEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEE-ECCCSSCCBSCEEEEE--TTEEEEEEEEE
T ss_pred EEEECCEEEEEeccCCCCccceEEEEECCCCeEEE-CCCCCCcccceeEEEE--CCEEEEECCcc
Confidence 333344 555665543 58899998764222 2111111 1122222 57778888764
No 430
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.56 E-value=1.6 Score=48.86 Aligned_cols=126 Identities=10% Similarity=0.163 Sum_probs=74.5
Q ss_pred CCeEEEEECCCCceeEEeccceeecCC-CCCeEEEEEeCCccEEEEEEC---C-------------CCEEEEEECCCCeE
Q 001349 954 DGAIQEIDLATGTFATIQTGHRKLLGK-ANPVHALQVHNGLVYTASTSL---D-------------GAAVKMWSTSNYNM 1016 (1094)
Q Consensus 954 Dg~I~iwDl~~~~~~~~~~~~~~~~~h-~~~V~sl~fs~~~~~las~s~---D-------------g~~I~iwd~~~~~~ 1016 (1094)
+.+|.+|++..+....... ..+.+. -...+.+.+.+++.+.++... | .+.|.-+|. ++.
T Consensus 138 ~s~ielf~~d~~~~~~~~~--~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~ 213 (355)
T 3sre_A 138 SSTVEVFKFQEEEKSLLHL--KTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDV 213 (355)
T ss_dssp CCEEEEEEEETTTTEEEEE--EEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCC
T ss_pred CCeEEEEEEECCCCEEEEE--eccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeE
Confidence 4667777665432211111 222222 246789999999988777541 1 124444544 333
Q ss_pred EEEecCCCCEEEEEEeCC--EEEEE-EcCCeEEEEECCC-CcE--EEEecccCCcceEEEEEcC-CCCEEEEEeCC
Q 001349 1017 VGSLPTLSEVRAMVVSSE--LVYLG-CKGGTVEIWDQKR-QIR--IETLQTGTSGKVQCMALDD-NEEFLVIGTSD 1085 (1094)
Q Consensus 1017 ~~~~~~~~~v~~l~~spd--~l~sg-s~dg~I~vwd~~t-~~~--~~~l~~~h~~~I~~l~~Sp-dg~~L~sgs~D 1085 (1094)
......-...+.++|+|| .++.+ +..+.|+.|++.. ++. ...+ ...+..-.+++.+ +|++.+++..+
T Consensus 214 ~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~--~~~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 214 RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL--SFDTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE--ECSSEEEEEEECTTTCCEEEEEESC
T ss_pred EEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE--eCCCCCceEEEeCCCCcEEEEecCC
Confidence 222334466889999999 55555 4678999999863 332 2233 1245678899998 59887766544
No 431
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.54 E-value=1.7 Score=48.47 Aligned_cols=200 Identities=10% Similarity=0.095 Sum_probs=98.1
Q ss_pred CCCeEEEEecCC--CcceeEEEecc-----cCCCeEEEEEec--CCC-EEEEE-eC--CCcEEEEECCCCc--eEEEEec
Q 001349 831 SDGTIKVWTGRG--SILHLIQQIRE-----HTKAVTGLAILQ--SGE-MLYSG-SL--DKTARVWSIGNEE--IHCVQVH 895 (1094)
Q Consensus 831 ~Dg~I~vWd~~t--~~~~~~~~l~~-----H~~~V~sv~fsp--dg~-~LaSg-s~--DgtI~vWdi~~~~--~~~~~~~ 895 (1094)
.+|.|.++|..+ .+...+. +.+ ..-....+.+.+ +|. +|+.+ .. +.+|.+|+++.+. ...+...
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~-~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~ 159 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELE-IIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTI 159 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECE-EECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEE
T ss_pred CCCeEEEEecCCCCCceEEEE-ccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEecc
Confidence 689999999874 3222222 222 234677788766 354 34443 22 4677887776532 2222222
Q ss_pred ccCccceeeeecCceEEEeeCCCeEEEEEeC-C--eEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEec
Q 001349 896 DIKDQIQNLAVSNSILCFIPQGAGIKVHLRN-G--KTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQT 972 (1094)
Q Consensus 896 ~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~-g--~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~ 972 (1094)
.. .+.. .++.+.+.++|...+..... . ....+. .+.+...|.|..||.. +.....
T Consensus 160 ~g-~~~~----~pND~~v~~~G~fyvt~~~~ftd~~~~~~e--------------~~~~~~~g~vyr~d~~--~~~~~~- 217 (355)
T 3sre_A 160 RH-KLLP----SVNDIVAVGPEHFYATNDHYFIDPYLKSWE--------------MHLGLAWSFVTYYSPN--DVRVVA- 217 (355)
T ss_dssp CC-TTCS----SEEEEEEEETTEEEEEESCSCSSHHHHHHH--------------HHTTCCCEEEEEECTT--CCEEEE-
T ss_pred cc-CCCC----CCceEEEeCCCCEEecCCcEeCCcccccch--------------hhccCCccEEEEEECC--eEEEee-
Confidence 21 1111 12334466776643322100 0 000000 0000112455556552 221111
Q ss_pred cceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCC-CeE--EEEecCCCCEEEEEEeC-C-EEEEEE-cC-CeE
Q 001349 973 GHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSN-YNM--VGSLPTLSEVRAMVVSS-E-LVYLGC-KG-GTV 1045 (1094)
Q Consensus 973 ~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~-~~~--~~~~~~~~~v~~l~~sp-d-~l~sgs-~d-g~I 1045 (1094)
..-...+.++|+||+..+..+....+.|..|++.. +.. .+.+......-.+++++ + .++++. .+ +.|
T Consensus 218 ------~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~~~g~~v 291 (355)
T 3sre_A 218 ------EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPNGMRI 291 (355)
T ss_dssp ------EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEESCHHHH
T ss_pred ------cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEecCCceEE
Confidence 11135689999999977666655556999999863 332 22343456678888887 4 454433 33 344
Q ss_pred EEEECC--CCcEEEEe
Q 001349 1046 EIWDQK--RQIRIETL 1059 (1094)
Q Consensus 1046 ~vwd~~--t~~~~~~l 1059 (1094)
..||.. .+..+..+
T Consensus 292 ~~~~P~~~~~s~v~rI 307 (355)
T 3sre_A 292 FFYDAENPPGSEVLRI 307 (355)
T ss_dssp HSCCTTSCCCEEEEEE
T ss_pred EEECCCCCCCCEEEEE
Confidence 444443 24444444
No 432
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.33 E-value=8.2 Score=47.75 Aligned_cols=261 Identities=12% Similarity=0.109 Sum_probs=144.3
Q ss_pred cEEEEEEeC--CEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEE
Q 001349 815 KVLSIACFR--DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCV 892 (1094)
Q Consensus 815 ~V~~l~fsp--d~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~ 892 (1094)
.|.++...+ +.|..|+. +-+..+|..++.......+ ....|.++....+|.+.+ |+.+| +.+++..++.....
T Consensus 192 ~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l--~~~~i~~i~~d~~g~lWi-gT~~G-l~~~~~~~~~~~~~ 266 (758)
T 3ott_A 192 FVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAF--HNNSIKSLALDGNGDLLA-GTDNG-LYVYHNDTTPLQHI 266 (758)
T ss_dssp CEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEE--EEEEEEEEEECTTCCEEE-EETTE-EEEECCTTSCCEEE
T ss_pred eeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCC--CCCeEEEEEEcCCCCEEE-EeCCc-eeEEecCCCcEEEE
Confidence 488888875 35666664 4578889887743332222 234588888887777655 44554 78888877654333
Q ss_pred Eecc------cCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC-----------------CCCceEEEEe-CCEE
Q 001349 893 QVHD------IKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS-----------------SKYPKCLALV-QGKV 948 (1094)
Q Consensus 893 ~~~~------~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~-----------------~~~v~~l~~s-~~~l 948 (1094)
.... ....|.++. ...+|. +-+++..| +.++.. ...|.++... ++.+
T Consensus 267 ~~~~~~~~~l~~~~i~~i~-------~D~~g~-lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~l 337 (758)
T 3ott_A 267 IHDSRNIQSLTNNIIWNIF-------ADQEHN-IWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFY 337 (758)
T ss_dssp CCCTTCTTSCSCSCEEEEE-------ECTTCC-EEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCE
T ss_pred EcCCCCcCcCCcCeEEEEE-------EcCCCC-EEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCE
Confidence 2111 112344443 223333 33333334 222211 1245666554 4678
Q ss_pred EEEEcCCeEEEEECCCCce--eEEeccc-eeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEe--c--
Q 001349 949 YCGCQDGAIQEIDLATGTF--ATIQTGH-RKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSL--P-- 1021 (1094)
Q Consensus 949 ~sgs~Dg~I~iwDl~~~~~--~~~~~~~-~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~--~-- 1021 (1094)
.+|+.+ -+..++..++.. ...+... ....-....|.++.-..++.+-++. ++ -+..||..+++..... .
T Consensus 338 WiGt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt--~~-GL~~~~~~~~~~~~~~~~~~~ 413 (758)
T 3ott_A 338 WFGGAN-GLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIAT--DG-SINRYDYATRQFIHYNIVDNT 413 (758)
T ss_dssp EEEETT-EEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEEE--TT-EEEEEETTTTEEEEEEEECCC
T ss_pred EEeeCC-cceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEEe--CC-cHhhcCcCCCcEEEeecCCCc
Confidence 888865 566777665421 1111100 0000112468888887776554443 33 5999999887654321 1
Q ss_pred ---CCCCEEEEEEeCC-EEEEEEcCCeEEEEECCC-----CcEE---EEec--cc-CCcceEEEEEcCCCCEEEEEeCCC
Q 001349 1022 ---TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKR-----QIRI---ETLQ--TG-TSGKVQCMALDDNEEFLVIGTSDG 1086 (1094)
Q Consensus 1022 ---~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t-----~~~~---~~l~--~~-h~~~I~~l~~Spdg~~L~sgs~DG 1086 (1094)
....|.++..+++ .+..|+..+-|.++|..+ +... ..+. .+ ....|.++...++|.+.+.++..+
T Consensus 414 ~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~ 493 (758)
T 3ott_A 414 GTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNK 493 (758)
T ss_dssp --CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCS
T ss_pred CCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCC
Confidence 1245888888776 888999877788998653 1222 1221 11 123589999998888766333333
Q ss_pred cEEEEeC
Q 001349 1087 RIQAWGL 1093 (1094)
Q Consensus 1087 ~I~iWdl 1093 (1094)
-|..+|.
T Consensus 494 Gl~~~d~ 500 (758)
T 3ott_A 494 GIDKINP 500 (758)
T ss_dssp SEEEEET
T ss_pred CcEEEeC
Confidence 4655653
No 433
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.25 E-value=2.3 Score=46.41 Aligned_cols=122 Identities=15% Similarity=0.225 Sum_probs=59.1
Q ss_pred eEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCC----CEEEEEECCCCeEEE--EecCCCCEEEE
Q 001349 956 AIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG----AAVKMWSTSNYNMVG--SLPTLSEVRAM 1029 (1094)
Q Consensus 956 ~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg----~~I~iwd~~~~~~~~--~~~~~~~v~~l 1029 (1094)
.+.+||+.+.+............+| +++...+..+++.|..++ ..+.+||..+.+-.. .+.....-.++
T Consensus 128 ~~~~yd~~~~~W~~~~~~p~~r~~~-----~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~ 202 (318)
T 2woz_A 128 SVLCYDPVAAKWSEVKNLPIKVYGH-----NVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGV 202 (318)
T ss_dssp EEEEEETTTTEEEEECCCSSCEESC-----EEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred eEEEEeCCCCCEeECCCCCCccccc-----EEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceE
Confidence 5788999887765432211112222 233345555555443221 258999998764222 22222111233
Q ss_pred EEeCC-EEEEEEcC-----CeEEEEECCCCcEEE--EecccCCcceEEEEEcCCCCEEEEEeCC
Q 001349 1030 VVSSE-LVYLGCKG-----GTVEIWDQKRQIRIE--TLQTGTSGKVQCMALDDNEEFLVIGTSD 1085 (1094)
Q Consensus 1030 ~~spd-~l~sgs~d-----g~I~vwd~~t~~~~~--~l~~~h~~~I~~l~~Spdg~~L~sgs~D 1085 (1094)
+...+ .++.|+.+ ..+.+||+.+.+-.. .+.. .......+. .++++++.|+.+
T Consensus 203 ~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~--~~~~i~v~GG~~ 263 (318)
T 2woz_A 203 AIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQ-ERSSISLVS--LAGSLYAIGGFA 263 (318)
T ss_dssp EEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSS-CCBSCEEEE--ETTEEEEECCBC
T ss_pred EEECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCC-cccceEEEE--ECCEEEEECCee
Confidence 33444 55555432 457889988765221 1211 111112222 357777877754
No 434
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=95.24 E-value=7.6 Score=46.87 Aligned_cols=296 Identities=12% Similarity=-0.009 Sum_probs=155.2
Q ss_pred CcEEE-EeeCCCCeEEEeCCcc---eeecccCCCcEEEEEEeC--C-EEEEEECCCeEEEEecCCCcceeEEEecccCCC
Q 001349 785 MVKVL-SNGHDSSADFWNHREL---VHVDSSENGKVLSIACFR--D-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKA 857 (1094)
Q Consensus 785 ~~~l~-s~s~dg~I~vWd~~~~---~~~~~~h~~~V~~l~fsp--d-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~ 857 (1094)
...|+ +-...+.|..++.... ..+....-.....+++.+ + ++++-...+.|.+.+..+.. ....+...-..
T Consensus 51 ~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~--~~~l~~~~l~~ 128 (619)
T 3s94_A 51 HGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL--RKVLFWQELDQ 128 (619)
T ss_dssp TTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEEECSSCSC
T ss_pred CCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC--EEEEEeCCCCC
Confidence 44444 4344577777777632 223333335788899986 3 55556677999999998762 22222234455
Q ss_pred eEEEEEecCCCEEEEEeC--CCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeC-CeEEEEcC
Q 001349 858 VTGLAILQSGEMLYSGSL--DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRN-GKTKLLNS 934 (1094)
Q Consensus 858 V~sv~fspdg~~LaSgs~--DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~-g~i~l~~~ 934 (1094)
...|++.|.+.+|+.+.. .+.|...+++......+.... -.. |..+++++++..+.+.... +.+..++.
T Consensus 129 P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~-~~~-------P~Glald~~~~~LY~aD~~~~~I~~~~~ 200 (619)
T 3s94_A 129 PRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSE-IYW-------PNGLTLDYEEQKLYWADAKLNFIHKSNL 200 (619)
T ss_dssp CCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSS-CSS-------EEEEEEETTTTEEEEEETTTCCEEEESS
T ss_pred CceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCC-CCC-------CcEEEEEccCCEEEEEeCCCCeEEEecC
Confidence 778999997555554443 356766777654433332211 122 2334477766555554432 44555443
Q ss_pred C------------CCceEEEEeCCEEEEEE-cCCeEEEEECCCCceeEEeccc-------------eeecCCC------C
Q 001349 935 S------------KYPKCLALVQGKVYCGC-QDGAIQEIDLATGTFATIQTGH-------------RKLLGKA------N 982 (1094)
Q Consensus 935 ~------------~~v~~l~~s~~~l~sgs-~Dg~I~iwDl~~~~~~~~~~~~-------------~~~~~h~------~ 982 (1094)
. .....+++.++.++... ..+.|...|..+|+........ ....+.. +
T Consensus 201 dG~~~~~~~~~~~~~P~gi~~~~~~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng 280 (619)
T 3s94_A 201 DGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNG 280 (619)
T ss_dssp SCCEEC---------CCCEEESSSEEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGG
T ss_pred CCCccEEEEeCCCCCceEEEEeCCEEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCC
Confidence 2 23455666666766654 4578888998777543221100 0000000 0
Q ss_pred CeEEEEE-----------eCC---------------ccEEEEEECCCCEEEEEECCCCeEE-EEe--cCCCCEEEEEEeC
Q 001349 983 PVHALQV-----------HNG---------------LVYTASTSLDGAAVKMWSTSNYNMV-GSL--PTLSEVRAMVVSS 1033 (1094)
Q Consensus 983 ~V~sl~f-----------s~~---------------~~~las~s~Dg~~I~iwd~~~~~~~-~~~--~~~~~v~~l~~sp 1033 (1094)
....+++ .|. ..+++.+. . ..|+..++...... ..+ ..-..+.+++|++
T Consensus 281 ~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~-~-~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~ 358 (619)
T 3s94_A 281 GCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLAR-R-TDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDP 358 (619)
T ss_dssp GCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEE-S-SCEEEEESSSTTCCCEECCCSCCSSEEEEEEET
T ss_pred cccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEc-c-cceEEEecCCCccceeEEeccccCccEEEEEEc
Confidence 0111111 111 11222222 1 24565666543211 111 2335678899987
Q ss_pred C--EEEEEE-cCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEE-EEEeCCCcEEEEeC
Q 001349 1034 E--LVYLGC-KGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFL-VIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1034 d--~l~sgs-~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L-~sgs~DG~I~iWdl 1093 (1094)
. .++.+. ..+.|+.+++........+ .........+++...+..| ++-+..+.|.+.++
T Consensus 359 ~~~~ly~sD~~~~~I~r~~~~g~~~~~v~-~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~ 421 (619)
T 3s94_A 359 VEGYIYWTDDEVRAIRRSFIDGSGSQFVV-TAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRL 421 (619)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCEEEE-CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CCCeEEEEeCCCCeEEEEEcCCCccEEEE-ECCCCCcCceEEecccCcEEEEeCCCCcEEEEeC
Confidence 3 555554 5788999998765433333 2233467889998755544 44445677777654
No 435
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.11 E-value=1.3 Score=48.21 Aligned_cols=111 Identities=9% Similarity=0.026 Sum_probs=57.1
Q ss_pred cccccccCcEEEEeeCC----CCeEEEeCCcceeec----ccCCCcEEEEEEeCCEEEEEEC----C-----CeEEEEec
Q 001349 778 YSPLAFEMVKVLSNGHD----SSADFWNHRELVHVD----SSENGKVLSIACFRDKIFSGHS----D-----GTIKVWTG 840 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~d----g~I~vWd~~~~~~~~----~~h~~~V~~l~fspd~LaSgs~----D-----g~I~vWd~ 840 (1094)
..+...++..++.||.+ ..+.+||..+..... ......-..+.+...+++.|+. + ..+.+||.
T Consensus 18 ~~~~~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~ 97 (308)
T 1zgk_A 18 SHAPKVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNP 97 (308)
T ss_dssp ---CCCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEET
T ss_pred ccccCCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECC
Confidence 45555667777777742 456777776322111 1111111223333335555554 2 46888999
Q ss_pred CCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCC-----CcEEEEECCCCceE
Q 001349 841 RGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD-----KTARVWSIGNEEIH 890 (1094)
Q Consensus 841 ~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~D-----gtI~vWdi~~~~~~ 890 (1094)
.++.+..+..+......-..+.+ ++++++.|+.+ ..+.+||..+++..
T Consensus 98 ~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 150 (308)
T 1zgk_A 98 MTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWH 150 (308)
T ss_dssp TTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEE
T ss_pred CCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEe
Confidence 98865554433322222222222 66777777643 35778888876543
No 436
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=95.02 E-value=3.1 Score=46.39 Aligned_cols=95 Identities=8% Similarity=0.065 Sum_probs=54.8
Q ss_pred ccccccCcEEEEeeCCCCeEEEeCCccee-----ecccCCCcEEEEEEeCC-----EEEEEECC------CeEEEEecCC
Q 001349 779 SPLAFEMVKVLSNGHDSSADFWNHRELVH-----VDSSENGKVLSIACFRD-----KIFSGHSD------GTIKVWTGRG 842 (1094)
Q Consensus 779 ~~~~~d~~~l~s~s~dg~I~vWd~~~~~~-----~~~~h~~~V~~l~fspd-----~LaSgs~D------g~I~vWd~~t 842 (1094)
..+.+++..++ +..+|.|.+++-..... +..........|+|+|+ .|+.+... +.|..|+..+
T Consensus 36 ia~~pdG~l~V-~e~~g~I~~i~~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~ 114 (352)
T 2ism_A 36 LAFLPDGGMLI-AERPGRIRLFREGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLG 114 (352)
T ss_dssp EEECTTSCEEE-EETTTEEEEEETTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECS
T ss_pred EEEcCCCeEEE-EeCCCeEEEEECCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCC
Confidence 34556777444 45668898887222111 11223467899999996 66555432 6788888775
Q ss_pred Ccc---ee-EEEec---ccCCCeEEEEEecCCCEEEEEe
Q 001349 843 SIL---HL-IQQIR---EHTKAVTGLAILQSGEMLYSGS 874 (1094)
Q Consensus 843 ~~~---~~-~~~l~---~H~~~V~sv~fspdg~~LaSgs 874 (1094)
+.. +. +..+. +.......++|.|||.+.++.+
T Consensus 115 ~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 115 ERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp SCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred CCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 421 11 22233 1111236899999997766654
No 437
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=94.73 E-value=0.098 Score=64.65 Aligned_cols=219 Identities=11% Similarity=0.002 Sum_probs=107.1
Q ss_pred CCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEE-eCCCcEEEEECCCCceEEEEecccCccceeeeecCce
Q 001349 832 DGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSG-SLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSI 910 (1094)
Q Consensus 832 Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSg-s~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~ 910 (1094)
.+.|++.++.+. .....+ .....+..|+|++.+..|+.+ ...+.|+.+++.+.... ......+..-...+..
T Consensus 385 ~~~I~~id~~~~--~~~~~~-~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~----~~~~~~i~~~~~~P~g 457 (699)
T 1n7d_A 385 RHEVRKMTLDRS--EYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV----SSYDTVISRDIQAPDG 457 (699)
T ss_dssp TTC-CEECTTSC--CEECCS-CCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-----CCCCCBCCSCC--CCC
T ss_pred ccceEEEeCCCC--cceeee-ccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCC----cceEEEEeCCCCCcce
Confidence 357788888776 222222 233456789999866666554 44578888888751000 0000000000001111
Q ss_pred EEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEE-EcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEE
Q 001349 911 LCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCG-CQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQV 989 (1094)
Q Consensus 911 ~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sg-s~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~f 989 (1094)
+++.+.+ +.|+.+ ...+.|.++++.......... ........+++
T Consensus 458 lavD~~~----------------------------g~LY~tD~~~~~I~v~d~dg~~~~~l~~------~~~~~P~giav 503 (699)
T 1n7d_A 458 LAVDWIH----------------------------SNIYWTDSVLGTVSVADTKGVKRKTLFR------EQGSKPRAIVV 503 (699)
T ss_dssp EECCCSS----------------------------SBCEECCTTTSCEEEEBSSSCCEEEECC------CSSCCCCCEEC
T ss_pred EEEEeeC----------------------------CcEEEEeccCCeEEEEecCCCceEEEEe------CCCCCcceEEE
Confidence 2232222 223222 345677777776544322111 11133567788
Q ss_pred eCCcc-EEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEE-EEcCCeEEEEECCCCcEEEEecc-cC
Q 001349 990 HNGLV-YTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYL-GCKGGTVEIWDQKRQIRIETLQT-GT 1063 (1094)
Q Consensus 990 s~~~~-~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~s-gs~dg~I~vwd~~t~~~~~~l~~-~h 1063 (1094)
+|.+. ++++-....+.|..+++........+. .-.....|+|+++ .|+. -+..+.|.++|+........+.. +.
T Consensus 504 Dp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~ 583 (699)
T 1n7d_A 504 DPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKR 583 (699)
T ss_dssp CSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSS
T ss_pred ccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCc
Confidence 87433 333321121367777764322211122 2345678999975 4444 45668899999875433322211 11
Q ss_pred CcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1064 SGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1064 ~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
......|++..+ .++++....+.|..++
T Consensus 584 ~~~P~glavd~~-~lywtd~~~~~V~~~d 611 (699)
T 1n7d_A 584 LAHPFSLAVFED-KVFWTDIINEAIFSAN 611 (699)
T ss_dssp CSSCCCCEEETT-EEEEECSTTTCEEEEE
T ss_pred CCCceEeEEECC-EEEEEeCCCCeEEEEE
Confidence 223455666543 4445555567788776
No 438
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=94.69 E-value=0.096 Score=64.59 Aligned_cols=219 Identities=14% Similarity=0.106 Sum_probs=131.7
Q ss_pred ccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHH-HHhcC----hHHHHHHHHhcCCCh-----HHHHHhhh
Q 001349 323 FNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVA-LFKKG----LLEAVVLIDLLRPST-----RTLIEMDM 392 (1094)
Q Consensus 323 ~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~-lLk~g----~~~Aa~~l~~L~~~~-----~~~~~~~~ 392 (1094)
+.|.+..++..|...|.+|.. +.+.++.+.+. +.+..++. +|.-. +.+|+.+|.+|.... ..+..-+.
T Consensus 43 L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~-~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~i 120 (684)
T 4gmo_A 43 LKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLRE-QVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRLDV 120 (684)
T ss_dssp HSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHT-THHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTH
T ss_pred cCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHc-CCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHcCh
Confidence 357888999999999999964 66666666644 45555554 44322 778999999996432 34455566
Q ss_pred hHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHH
Q 001349 393 MESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRC 472 (1094)
Q Consensus 393 ~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~ 472 (1094)
+++|++.|++..+.. .....+.. ......-..+.+. -.++..+|.+.
T Consensus 121 l~~L~~~l~~~~~~~-~~~~~~~~------------------------~~~~~~~~~~~~~--------~~~~l~lL~~L 167 (684)
T 4gmo_A 121 LTAIEHAAKAVLETL-TTSEPPFS------------------------KLLKAQQRLVWDI--------TGSLLVLIGLL 167 (684)
T ss_dssp HHHHHHHHHHHHHHH-HCBTTBGG------------------------GSCHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHH-hhhccccc------------------------cccHHHHHHHHHH--------HHHHHHHHHHH
Confidence 799999998742210 00000000 0000000001111 11233445555
Q ss_pred hhccCcchhhHhhhcCchhHHHHHHhcCC---chhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhc
Q 001349 473 MQEDGKCRNSIADKAELAPVMESFMAASD---GERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTA 549 (1094)
Q Consensus 473 ~~~~~~~r~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~ 549 (1094)
+..+..-...+.....++.++.+|..... ..+..|.++|+.|..- +.++.+.|.+.+....|.+++.. ++.
T Consensus 168 ~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~d-----n~~~~~~i~~~~~~~~~~~ll~~-~~~ 241 (684)
T 4gmo_A 168 ALARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSED-----NLKVGQAITDDQETHVYDVLLKL-ATG 241 (684)
T ss_dssp HHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTT-----CHHHHHHHHTCCSSCHHHHHHHH-HHS
T ss_pred HhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcc-----CHHHHHHHHhcchHHHHHHHHHH-hcC
Confidence 55555666667777788888887765432 3455678888888655 55778888888877777766654 455
Q ss_pred CCccchhHHHHHHhhhcccCCCCCCccHHHHHH
Q 001349 550 NHDQCPVVAGLLLQLDLLAEPRKMSIYREEAID 582 (1094)
Q Consensus 550 ~~~~~~~~a~~l~~l~~~~~~~~~~~~reea~~ 582 (1094)
..-.+-+++++|..+-.-.....++.|...++.
T Consensus 242 ~~~~~~la~giL~Ni~~~~~~~d~s~~~~~~~~ 274 (684)
T 4gmo_A 242 TDPRAVMACGVLHNVFTSLQWMDHSPGKDGACD 274 (684)
T ss_dssp SCTTHHHHHHHHHHHHHHHTCBTTBCCGGGCSG
T ss_pred CcHHHHHHHHHHHhHhhhhhhhhcchhhHHHHH
Confidence 555678889998876433344455666655544
No 439
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=94.68 E-value=1.1 Score=48.78 Aligned_cols=130 Identities=13% Similarity=0.236 Sum_probs=64.1
Q ss_pred CeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCC----CEEEEEECCCCeEEE--EecCCCCEEE
Q 001349 955 GAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG----AAVKMWSTSNYNMVG--SLPTLSEVRA 1028 (1094)
Q Consensus 955 g~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg----~~I~iwd~~~~~~~~--~~~~~~~v~~ 1028 (1094)
..+.+||+.+++............+ .+++...+..+++ |+.++ ..+.+||..+.+-.. .+.....-.+
T Consensus 137 ~~~~~yd~~~~~W~~~~~~p~~r~~-----~~~~~~~~~iyv~-GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~ 210 (308)
T 1zgk_A 137 NSVERYEPERDEWHLVAPMLTRRIG-----VGVAVLNRLLYAV-GGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAG 210 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBS-----CEEEEETTEEEEE-CCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCE
T ss_pred ccEEEECCCCCeEeECCCCCccccc-----eEEEEECCEEEEE-eCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccce
Confidence 4688899988765532211111111 1233334444444 43332 258899987754322 1222111122
Q ss_pred EEEeCC-EEEEEEcC-----CeEEEEECCCCcEEEEecccCC--cceEEEEEcCCCCEEEEEeCCC-----cEEEEeC
Q 001349 1029 MVVSSE-LVYLGCKG-----GTVEIWDQKRQIRIETLQTGTS--GKVQCMALDDNEEFLVIGTSDG-----RIQAWGL 1093 (1094)
Q Consensus 1029 l~~spd-~l~sgs~d-----g~I~vwd~~t~~~~~~l~~~h~--~~I~~l~~Spdg~~L~sgs~DG-----~I~iWdl 1093 (1094)
++...+ .++.|+.+ ..+.+||+.+.+-. .+..... .....+. -++++++.|+.++ .|.+||+
T Consensus 211 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~-~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~ 285 (308)
T 1zgk_A 211 VCVLHNCIYAAGGYDGQDQLNSVERYDVETETWT-FVAPMKHRRSALGITV--HQGRIYVLGGYDGHTFLDSVECYDP 285 (308)
T ss_dssp EEEETTEEEEECCBCSSSBCCCEEEEETTTTEEE-ECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEET
T ss_pred EEEECCEEEEEeCCCCCCccceEEEEeCCCCcEE-ECCCCCCCccceEEEE--ECCEEEEEcCcCCCcccceEEEEcC
Confidence 333345 55556543 56999999876422 2211111 1112222 2677888887543 4677775
No 440
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=94.32 E-value=3.6 Score=44.64 Aligned_cols=95 Identities=13% Similarity=0.189 Sum_probs=47.9
Q ss_pred CeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCC---CEEEEEECCCCeEEE--EecCCCCEEEE
Q 001349 955 GAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG---AAVKMWSTSNYNMVG--SLPTLSEVRAM 1029 (1094)
Q Consensus 955 g~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg---~~I~iwd~~~~~~~~--~~~~~~~v~~l 1029 (1094)
..+.+||+.+.+......... ...-.++....+..+++.|..+. ..+.+||..+.+-.. .+.....-.++
T Consensus 165 ~~~~~yd~~~~~W~~~~~~p~-----~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~ 239 (315)
T 4asc_A 165 NKMCVYDPKKFEWKELAPMQT-----ARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSL 239 (315)
T ss_dssp CCEEEEETTTTEEEECCCCSS-----CCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred ceEEEEeCCCCeEEECCCCCC-----chhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeE
Confidence 468899998876543221111 11112333445555555543322 168889988764222 22222222233
Q ss_pred EEeCC-EEEEEEcC--------------CeEEEEECCCCc
Q 001349 1030 VVSSE-LVYLGCKG--------------GTVEIWDQKRQI 1054 (1094)
Q Consensus 1030 ~~spd-~l~sgs~d--------------g~I~vwd~~t~~ 1054 (1094)
+...+ .++.|+.+ +.+.+||+.+.+
T Consensus 240 ~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 240 VSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp EEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred EEECCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence 33344 55555543 347788988764
No 441
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=94.15 E-value=5.1 Score=43.50 Aligned_cols=104 Identities=12% Similarity=0.000 Sum_probs=51.9
Q ss_pred CcEEEEeeCCCCeEEEeCCcceeec---cc-CCCcEEEEEEeCC-EEEEEEC----CC-------eEEEEecCCCcceeE
Q 001349 785 MVKVLSNGHDSSADFWNHRELVHVD---SS-ENGKVLSIACFRD-KIFSGHS----DG-------TIKVWTGRGSILHLI 848 (1094)
Q Consensus 785 ~~~l~s~s~dg~I~vWd~~~~~~~~---~~-h~~~V~~l~fspd-~LaSgs~----Dg-------~I~vWd~~t~~~~~~ 848 (1094)
...++.|+.+ +..||..+..... .. ....-.+++...+ .++.|+. ++ .+.+||..++.+..+
T Consensus 16 ~~i~~~GG~~--~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 93 (318)
T 2woz_A 16 DLILLVNDTA--AVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL 93 (318)
T ss_dssp EEEEEECSSE--EEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEEC
T ss_pred chhhhccccc--eEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEEC
Confidence 3455556543 6778876322111 11 1112233333444 6666762 12 177889888865544
Q ss_pred EEecccCCCeEEEEEecCCCEEEEEeCC-------CcEEEEECCCCceEEE
Q 001349 849 QQIREHTKAVTGLAILQSGEMLYSGSLD-------KTARVWSIGNEEIHCV 892 (1094)
Q Consensus 849 ~~l~~H~~~V~sv~fspdg~~LaSgs~D-------gtI~vWdi~~~~~~~~ 892 (1094)
..+......- +++.. ++.+++.|+.+ ..+.+||..+++...+
T Consensus 94 ~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~ 142 (318)
T 2woz_A 94 PPLPSARCLF-GLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEV 142 (318)
T ss_dssp SCBSSCBCSC-EEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEE
T ss_pred CCCCcccccc-ceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeEC
Confidence 3332211111 22222 66777777754 2477788887754433
No 442
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=93.64 E-value=18 Score=44.54 Aligned_cols=285 Identities=13% Similarity=0.109 Sum_probs=149.3
Q ss_pred EEEEeeCCCCeEEEeCCc-ceeec-----ccCCCcEEEEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEeccc----C
Q 001349 787 KVLSNGHDSSADFWNHRE-LVHVD-----SSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREH----T 855 (1094)
Q Consensus 787 ~l~s~s~dg~I~vWd~~~-~~~~~-----~~h~~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H----~ 855 (1094)
.+..+..+ -+..++... ....+ ......|.++...++ .|..|+.+| +..+|..++..... ..... .
T Consensus 114 ~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~G-l~~~~~~~~~~~~~-~~~~~~~~~~ 190 (758)
T 3ott_A 114 TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYVGTYNG-LCRYIPSNGKFEGI-PLPVHSSQSN 190 (758)
T ss_dssp EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEEEETTE-EEEEETTTTEEEEE-CCCCCTTCSS
T ss_pred cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEEEeCCC-HhhCccCCCceEEe-cCCCcccccc
Confidence 44445544 455677652 11111 112456888888754 666676654 77788877632111 11111 2
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC-
Q 001349 856 KAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS- 934 (1094)
Q Consensus 856 ~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~- 934 (1094)
..|.++...+++..|..|+. +-+..+|..+++........ ...|.++. ...+|.. -+++.+ .+..++.
T Consensus 191 ~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~-~~~i~~i~-------~d~~g~l-WigT~~-Gl~~~~~~ 259 (758)
T 3ott_A 191 LFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFH-NNSIKSLA-------LDGNGDL-LAGTDN-GLYVYHND 259 (758)
T ss_dssp CCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEE-EEEEEEEE-------ECTTCCE-EEEETT-EEEEECCT
T ss_pred ceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCC-CCeEEEEE-------EcCCCCE-EEEeCC-ceeEEecC
Confidence 34888888777776555664 34888998877543322111 22344443 2333332 222222 2333321
Q ss_pred ------------------CCCceEEEEe-CCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccE
Q 001349 935 ------------------SKYPKCLALV-QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVY 995 (1094)
Q Consensus 935 ------------------~~~v~~l~~s-~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~ 995 (1094)
...|.++... ++.|.+|+..| +.++.. .............-......|.++....++.+
T Consensus 260 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT~~G-l~~~~~-~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~l 337 (758)
T 3ott_A 260 TTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLGTDYG-ISLSRY-NSALQFIPISQITGTGDGNQFYSLFRDSKGFY 337 (758)
T ss_dssp TSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEEEESSS-EEEECC-CC-CEEEEHHHHSCSCCCCBEEEEEECTTCCE
T ss_pred CCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEeCCc-cccccc-CCceeEEecccCCCCCCCceEEEEEEcCCCCE
Confidence 1236666665 46788888777 554433 22211110000000112346888888777665
Q ss_pred EEEEECCCCEEEEEECCCCe--EEEEec--------CCCCEEEEEEeCC-EEEEEEcCCeEEEEECCCCcEEEEec-cc-
Q 001349 996 TASTSLDGAAVKMWSTSNYN--MVGSLP--------TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQ-TG- 1062 (1094)
Q Consensus 996 las~s~Dg~~I~iwd~~~~~--~~~~~~--------~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~~~~~l~-~~- 1062 (1094)
-+.. .+ -+..++..++. ....+. ....|.++.-+.+ .+..|+ ++-+..||..+++...... ..
T Consensus 338 WiGt-~~--Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~ 413 (758)
T 3ott_A 338 WFGG-AN--GLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNT 413 (758)
T ss_dssp EEEE-TT--EEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC
T ss_pred EEee-CC--cceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCc
Confidence 5544 33 36667665432 122222 1245888888776 678888 4579999998875432210 11
Q ss_pred ---CCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1063 ---TSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1063 ---h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
....|.++...++|. |..|+..+-|..+|
T Consensus 414 ~~~~~~~v~~i~~d~~g~-lWigT~~~Gl~~~~ 445 (758)
T 3ott_A 414 GTYNTNWTYYIFEDTAGQ-LWISTCLGGIFVVD 445 (758)
T ss_dssp --CBSSSEEEEEECTTSE-EEEEESSSCEEEEE
T ss_pred CCCCCceEEEEEEcCCCC-EEEEECCCceEEEc
Confidence 123688888877765 45566555566654
No 443
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=93.63 E-value=2.4 Score=54.98 Aligned_cols=255 Identities=12% Similarity=0.048 Sum_probs=128.1
Q ss_pred CCeEEEeCCcceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEE
Q 001349 795 SSADFWNHRELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYS 872 (1094)
Q Consensus 795 g~I~vWd~~~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaS 872 (1094)
..|.|-|......+.... -.--+...+|. .++-- ...++.|+|+.+. ..+..+.- ...|.--.|-.+ +.|+-
T Consensus 48 ~~vvIidl~~~~~~~rrp-i~AdsAIMnP~~~iiALr-ag~~lQiFnl~~k--~klks~~~-~e~VvfWkWis~-~~l~l 121 (1630)
T 1xi4_A 48 AQVVIIDMNDPSNPIRRP-ISADSAIMNPASKVIALK-AGKTLQIFNIEMK--SKMKAHTM-TDDVTFWKWISL-NTVAL 121 (1630)
T ss_pred ceEEEEECCCCCCccccc-ccchhhccCCCcceEEEe-cCCeEEEeehHHh--hhhccccc-CCCceEEEecCC-CeeEE
Confidence 467777776432221111 11112234453 33333 4789999999987 45555443 345666677543 44444
Q ss_pred EeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEE
Q 001349 873 GSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGC 952 (1094)
Q Consensus 873 gs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs 952 (1094)
.+. ..|..|++.+.. .....++......+..+ -....+++.+++++.+-. ..+ |.
T Consensus 122 VT~-~aVyHW~~~~~s-~P~k~fdR~~~L~~~QI--inY~~d~~~kW~~l~gi~----------------~~~-----~~ 176 (1630)
T 1xi4_A 122 VTD-NAVYHWSMEGES-QPVKMFDRHSSLAGCQI--INYRTDAKQKWLLLTGIS----------------AQQ-----NR 176 (1630)
T ss_pred EcC-CeEEEeccCCCC-ccHHHHhcchhcccCee--EEeeeCCCCCeEEEEeec----------------cCC-----Cc
Confidence 443 469999996532 22222211111110000 011245555555433211 111 23
Q ss_pred cCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEe--CC-ccEEEEE--ECCCCEEEEEECCCC---eEEE------
Q 001349 953 QDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVH--NG-LVYTAST--SLDGAAVKMWSTSNY---NMVG------ 1018 (1094)
Q Consensus 953 ~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs--~~-~~~las~--s~Dg~~I~iwd~~~~---~~~~------ 1018 (1094)
..|.+++|....+.. +.+.||......+... +. ...++.+ ...|+.++|-++... .+..
T Consensus 177 v~G~mQLyS~er~~s-------Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~ 249 (1630)
T 1xi4_A 177 VVGAMQLYSVDRKVS-------QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVD 249 (1630)
T ss_pred ccceeeeeecccccc-------hhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCcccccc
Confidence 458899998876654 3445555444444332 11 1111111 123458999988542 1111
Q ss_pred -Eec---CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcE
Q 001349 1019 -SLP---TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRI 1088 (1094)
Q Consensus 1019 -~~~---~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I 1088 (1094)
.++ ..+...++.+++. .++.-+.-|.|++||+.||.++..-. -....|...+.+....-++.....|.|
T Consensus 250 ~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~r-is~~~iF~~~~~~~~~g~~~vnr~G~v 324 (1630)
T 1xi4_A 250 VFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR-ISGETIFVTAPHEATAGIIGVNRKGQV 324 (1630)
T ss_pred ccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhcc-ccCCceEEeccCCCCCceEEEcCCceE
Confidence 011 1344567888887 68888999999999999998776542 223344433333332333434445544
No 444
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=93.52 E-value=13 Score=42.33 Aligned_cols=202 Identities=10% Similarity=0.137 Sum_probs=121.5
Q ss_pred CcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCC-----------CCceEEEEe-
Q 001349 877 KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS-----------KYPKCLALV- 944 (1094)
Q Consensus 877 gtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~-----------~~v~~l~~s- 944 (1094)
..|-|.|+..+.. +..-....+....+|..+.++... ...+++|+.. ..|.-..|-
T Consensus 48 ~~vvIiDl~~~~~-----------~~rrpi~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis 115 (494)
T 1bpo_A 48 AQVVIIDMNDPSN-----------PIRRPISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWIS 115 (494)
T ss_dssp CEEEEEETTSTTS-----------CEEEECCCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEE
T ss_pred CeEEEEECCCCCc-----------ceecccccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecC
Confidence 3677777766431 221122233444778887777765 6777888753 344445553
Q ss_pred CCEEEEEEcCCeEEEEECCC-CceeEEeccceeecCCCCCeEEEEEeCCccEEEEEEC---CC---CEEEEEECCCCeEE
Q 001349 945 QGKVYCGCQDGAIQEIDLAT-GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSL---DG---AAVKMWSTSNYNMV 1017 (1094)
Q Consensus 945 ~~~l~sgs~Dg~I~iwDl~~-~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~---Dg---~~I~iwd~~~~~~~ 1017 (1094)
+..|+.. .+..|+-|++.. ..+...+..+..+. ...|.....+++..+++..+. ++ +.+.+|....+..
T Consensus 116 ~~~l~lV-T~taVyHWsi~~~s~P~kvFdR~~~L~--~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s- 191 (494)
T 1bpo_A 116 LNTVALV-TDNAVYHWSMEGESQPVKMFDRHSSLA--GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS- 191 (494)
T ss_dssp TTEEEEE-CSSEEEEEESSSSCCCEEEEECCGGGT--TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE-
T ss_pred CCeEEEE-cCCeeEEecccCCCCchhheecchhcc--cceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc-
Confidence 4444444 467899999974 34555555544443 356777777888887765532 21 3788999876543
Q ss_pred EEec-CCCCEEEEEEeCC-----EEEEEEc---CCeEEEEECCCC--------cEEEEecc---cCCcceEEEEEcCCCC
Q 001349 1018 GSLP-TLSEVRAMVVSSE-----LVYLGCK---GGTVEIWDQKRQ--------IRIETLQT---GTSGKVQCMALDDNEE 1077 (1094)
Q Consensus 1018 ~~~~-~~~~v~~l~~spd-----~l~sgs~---dg~I~vwd~~t~--------~~~~~l~~---~h~~~I~~l~~Spdg~ 1077 (1094)
+.+. |......+.+..+ .+..+.. .+.++|-++... +....+.. .-.+...++..|+...
T Consensus 192 Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kyg 271 (494)
T 1bpo_A 192 QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD 271 (494)
T ss_dssp EEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTT
T ss_pred chheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCC
Confidence 3333 3333444444433 3333433 378999998543 11112111 2244677889999999
Q ss_pred EEEEEeCCCcEEEEeCC
Q 001349 1078 FLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1078 ~L~sgs~DG~I~iWdls 1094 (1094)
.++.-+.-|.|++||+.
T Consensus 272 viyviTK~G~i~lyDle 288 (494)
T 1bpo_A 272 VVFLITKYGYIHLYDLE 288 (494)
T ss_dssp EEEEEETTSEEEEEETT
T ss_pred EEEEEecCceEEEEecc
Confidence 99999999999999974
No 445
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=93.51 E-value=1.4 Score=51.57 Aligned_cols=153 Identities=10% Similarity=0.052 Sum_probs=91.0
Q ss_pred CceEEEEeC---CEEEEEEcC-CeEEEEECCCCceeEEeccceeecCCCCCeEEEEE-------eCCccEEEEEECCC--
Q 001349 937 YPKCLALVQ---GKVYCGCQD-GAIQEIDLATGTFATIQTGHRKLLGKANPVHALQV-------HNGLVYTASTSLDG-- 1003 (1094)
Q Consensus 937 ~v~~l~~s~---~~l~sgs~D-g~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~f-------s~~~~~las~s~Dg-- 1003 (1094)
....|+++| +.|+++..+ +.|++.|+.++......... .........++| ++++.++......+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~---~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~ 216 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNIN---TIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGK 216 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCT---TSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccC---ccccCCCcEEEEeecccccCCCCCEEEEEeCCCCC
Confidence 356777774 346666553 67999999887765433211 112235889999 98887555554443
Q ss_pred ----CEEEEEECCC-CeEE-----EEecCCCCEEEEEEeCC--E-EEEEEcCCeEEEEECC-------CCcE--------
Q 001349 1004 ----AAVKMWSTSN-YNMV-----GSLPTLSEVRAMVVSSE--L-VYLGCKGGTVEIWDQK-------RQIR-------- 1055 (1094)
Q Consensus 1004 ----~~I~iwd~~~-~~~~-----~~~~~~~~v~~l~~spd--~-l~sgs~dg~I~vwd~~-------t~~~-------- 1055 (1094)
..|.+++... +... ..+........++++|+ . +++-..++.|+.+|+. ++..
T Consensus 217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~ 296 (496)
T 3kya_A 217 GDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNN 296 (496)
T ss_dssp GGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGC
T ss_pred cccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccc
Confidence 1366665433 1211 22221223456788884 4 4455577889999987 5543
Q ss_pred ---EEE-ecccCCcceEEEEEcCCCCEEEEE-eCCCcEEEEe
Q 001349 1056 ---IET-LQTGTSGKVQCMALDDNEEFLVIG-TSDGRIQAWG 1092 (1094)
Q Consensus 1056 ---~~~-l~~~h~~~I~~l~~Spdg~~L~sg-s~DG~I~iWd 1092 (1094)
... +..+.......++|+|+|++|+.+ +..+.|+.++
T Consensus 297 ~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid 338 (496)
T 3kya_A 297 PNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSD 338 (496)
T ss_dssp TTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEe
Confidence 112 222333457899999999965544 4566777754
No 446
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=93.24 E-value=2.1 Score=45.65 Aligned_cols=194 Identities=13% Similarity=0.130 Sum_probs=116.6
Q ss_pred CCcHHHHHHHHhcC----hHHHHHHHHhcCCChHHHHHhhhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcc
Q 001349 356 ESDVERIVALFKKG----LLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEE 431 (1094)
Q Consensus 356 ~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~ 431 (1094)
+..++.|+..|+.. ...|+..|..+.. -+.+++|+..|...... .+.+|+..|.++-...
T Consensus 22 ~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-------~~~~~~L~~~l~d~~~~-------vR~~A~~aL~~l~~~~-- 85 (280)
T 1oyz_A 22 KLNDDELFRLLDDHNSLKRISSARVLQLRGG-------QDAVRLAIEFCSDKNYI-------RRDIGAFILGQIKICK-- 85 (280)
T ss_dssp TSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------HHHHHHHHHHHTCSSHH-------HHHHHHHHHHHSCCCT--
T ss_pred HhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-------chHHHHHHHHHcCCCHH-------HHHHHHHHHHHhcccc--
Confidence 34678888888776 5677778887762 12448888888754311 2455666666541100
Q ss_pred cccccchhhhccchhHHHHHH-hhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHH
Q 001349 432 SIVSSIANTIVSSKVFESVIS-SLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCF 510 (1094)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~l~~-~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 510 (1094)
. . -...++.|.+ .+...+...|..|+..|......+..+ ....++.++.++...+...|..++..
T Consensus 86 ----~---~--~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~-----~~~~~~~L~~~l~d~~~~vR~~a~~a 151 (280)
T 1oyz_A 86 ----K---C--EDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITAFDKSTNVRRATAFA 151 (280)
T ss_dssp ----T---T--HHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred ----c---c--chHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc-----cHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 0 0 0012234442 345677888888888877654322211 12234566666666666666666666
Q ss_pred HHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhc
Q 001349 511 LSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRN 590 (1094)
Q Consensus 511 l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~~~~~reea~~~~~~~l~~ 590 (1094)
|..+ ... ..+..|...++...++-+..++..|.++.. .-+++++.|+..|.+
T Consensus 152 L~~~----------------~~~---~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------~~~~~~~~L~~~l~d 203 (280)
T 1oyz_A 152 ISVI----------------NDK---ATIPLLINLLKDPNGDVRNWAAFAININKY---------DNSDIRDCFVEMLQD 203 (280)
T ss_dssp HHTC----------------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTC---------CCHHHHHHHHHHTTC
T ss_pred HHhc----------------CCH---HHHHHHHHHHcCCCHHHHHHHHHHHHhhcc---------CcHHHHHHHHHHhcC
Confidence 5433 111 134446677766666666677777877631 136899999999976
Q ss_pred CCChHHHHHHHHHHHhcc
Q 001349 591 SDYPAAQLAAAKTIVSLQ 608 (1094)
Q Consensus 591 ~~~~~~~~~~~~~~~~l~ 608 (1094)
.+ ..++..|+.+|..++
T Consensus 204 ~~-~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 204 KN-EEVRIEAIIGLSYRK 220 (280)
T ss_dssp SC-HHHHHHHHHHHHHTT
T ss_pred CC-HHHHHHHHHHHHHhC
Confidence 54 678999999999886
No 447
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=92.74 E-value=8.9 Score=42.25 Aligned_cols=93 Identities=6% Similarity=-0.035 Sum_probs=46.5
Q ss_pred ccCcEEEEeeCC-CCeEEEeCCc---ceeec---c-cCCCcEEEEEEeCCEEEEEEC-C---------CeEEEEecCCCc
Q 001349 783 FEMVKVLSNGHD-SSADFWNHRE---LVHVD---S-SENGKVLSIACFRDKIFSGHS-D---------GTIKVWTGRGSI 844 (1094)
Q Consensus 783 ~d~~~l~s~s~d-g~I~vWd~~~---~~~~~---~-~h~~~V~~l~fspd~LaSgs~-D---------g~I~vWd~~t~~ 844 (1094)
.++..++.||.+ ..+.++|... .-..+ . .....-.++.+...+++.|+. + ..+.+||..+..
T Consensus 18 ~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~ 97 (357)
T 2uvk_A 18 DNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS 97 (357)
T ss_dssp ETTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred ECCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence 356666666654 4677777642 11111 1 111122233333335555554 2 468899999886
Q ss_pred ceeEEEecccCCCeEEEEEecCCCEEEEEeCC
Q 001349 845 LHLIQQIREHTKAVTGLAILQSGEMLYSGSLD 876 (1094)
Q Consensus 845 ~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~D 876 (1094)
+..+.........-.++.. .++++++.|+.+
T Consensus 98 W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~ 128 (357)
T 2uvk_A 98 WVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVN 128 (357)
T ss_dssp EEECSCCCSSCCSSEEEEE-ETTEEEEEECCC
T ss_pred EEECCCCCCcccccceEEE-ECCEEEEEeCcC
Confidence 6554443311111112222 477788888765
No 448
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=92.70 E-value=5.1 Score=49.16 Aligned_cols=196 Identities=10% Similarity=0.127 Sum_probs=96.5
Q ss_pred CEEEEEECC----CeEEEEecCCCcceeEE-Eec----ccCCCeEEEEEec-CCCEEEEEeCCC------cEEEEECCCC
Q 001349 824 DKIFSGHSD----GTIKVWTGRGSILHLIQ-QIR----EHTKAVTGLAILQ-SGEMLYSGSLDK------TARVWSIGNE 887 (1094)
Q Consensus 824 d~LaSgs~D----g~I~vWd~~t~~~~~~~-~l~----~H~~~V~sv~fsp-dg~~LaSgs~Dg------tI~vWdi~~~ 887 (1094)
..++.|+.+ ..+.+||..++.+..+. .+. .....-.+++..+ ++.+++.||.++ .+.+||..++
T Consensus 399 ~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~ 478 (695)
T 2zwa_A 399 DVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTR 478 (695)
T ss_dssp CEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTT
T ss_pred EEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCC
Confidence 366666643 46888999988766655 311 1111112333333 777777777543 4778888876
Q ss_pred ceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCC--eEEEEECCCC
Q 001349 888 EIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDG--AIQEIDLATG 965 (1094)
Q Consensus 888 ~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg--~I~iwDl~~~ 965 (1094)
+...+.... .+-... ..+...+++. ++.|+.++ .+.+||+.++
T Consensus 479 ~W~~~~~~p--~~R~~h-----~~~~~~~~~i----------------------------yv~GG~~~~~~v~~yd~~t~ 523 (695)
T 2zwa_A 479 EWSMIKSLS--HTRFRH-----SACSLPDGNV----------------------------LILGGVTEGPAMLLYNVTEE 523 (695)
T ss_dssp EEEECCCCS--BCCBSC-----EEEECTTSCE----------------------------EEECCBCSSCSEEEEETTTT
T ss_pred cEEECCCCC--CCcccc-----eEEEEcCCEE----------------------------EEECCCCCCCCEEEEECCCC
Confidence 543332111 110000 0011112322 33343333 6899999988
Q ss_pred ceeEEeccceeecCCCCCeEEEEEeCC-ccEEEEEEC--CC----CEEEEEECCCCe--------EEEEec--CCCCEEE
Q 001349 966 TFATIQTGHRKLLGKANPVHALQVHNG-LVYTASTSL--DG----AAVKMWSTSNYN--------MVGSLP--TLSEVRA 1028 (1094)
Q Consensus 966 ~~~~~~~~~~~~~~h~~~V~sl~fs~~-~~~las~s~--Dg----~~I~iwd~~~~~--------~~~~~~--~~~~v~~ 1028 (1094)
......... ...........+.+..+ +.+.+.|+. ++ ..+.+||+.+.. .+.... .......
T Consensus 524 ~W~~~~~~g-~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~ 602 (695)
T 2zwa_A 524 IFKDVTPKD-EFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQI 602 (695)
T ss_dssp EEEECCCSS-GGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEE
T ss_pred ceEEccCCC-CCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceE
Confidence 765332100 01101111123444543 444444443 11 368999988765 122211 1222344
Q ss_pred EEEeCC-EEEEEEc--------CCeEEEEECCCCcE
Q 001349 1029 MVVSSE-LVYLGCK--------GGTVEIWDQKRQIR 1055 (1094)
Q Consensus 1029 l~~spd-~l~sgs~--------dg~I~vwd~~t~~~ 1055 (1094)
+.+..+ .++.|+. ...|.+||+.+.+-
T Consensus 603 ~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W 638 (695)
T 2zwa_A 603 KYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETL 638 (695)
T ss_dssp EEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEE
T ss_pred EEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeE
Confidence 455524 5555653 35699999988753
No 449
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=92.61 E-value=1.2 Score=49.30 Aligned_cols=123 Identities=12% Similarity=0.090 Sum_probs=69.4
Q ss_pred CEEEEEECCCeEEEEecCCCcceeEEEeccc-CCCeEEEEEe--cCCCEEEEE--eCCCcEEEEECCCCceEEEEecccC
Q 001349 824 DKIFSGHSDGTIKVWTGRGSILHLIQQIREH-TKAVTGLAIL--QSGEMLYSG--SLDKTARVWSIGNEEIHCVQVHDIK 898 (1094)
Q Consensus 824 d~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H-~~~V~sv~fs--pdg~~LaSg--s~DgtI~vWdi~~~~~~~~~~~~~~ 898 (1094)
+.++.++.||.|.-.|..+| +..++++.. ..++....-. +.+..++.+ +.||.+..++..+|..+..... .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG--~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~--~ 86 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNG--HIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSI--R 86 (339)
T ss_dssp EEEEEEETTSCEEEEETTTT--EEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEH--H
T ss_pred CEEEEEeCCCeEEEEECCCC--cEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecc--c
Confidence 37899999999999999999 777777643 1222221100 112234433 5899999999988743221111 1
Q ss_pred ccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEec
Q 001349 899 DQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQT 972 (1094)
Q Consensus 899 ~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~ 972 (1094)
..+.. ++ +.-++.-++ .+.. -...++.+++|+.+|.+...|+.+|+.+..+.
T Consensus 87 ~lv~~---SP----~~~~~~pvv----------~~~~-----~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~ 138 (339)
T 2be1_A 87 QLVST---SP----LHLKTNIVV----------NDSG-----KIVEDEKVYTGSMRTIMYTINMLNGEIISAFG 138 (339)
T ss_dssp HHHTT---CS----EEEECC-------------------------CCEEEEECEEEEEEEEEETTTCCEEEEES
T ss_pred cceec---cc----cccCCCcee----------eccc-----ccccCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 11100 00 000111000 0000 00024568999999999999999999987654
No 450
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=92.36 E-value=16 Score=40.44 Aligned_cols=251 Identities=13% Similarity=0.107 Sum_probs=119.2
Q ss_pred cCCCcEEEEEEeCC-EEEEEEC-CCeEEEEecCCCcceeEEEe----cccCCCeEEEEEecC---CCEEEEE-e--CCCc
Q 001349 811 SENGKVLSIACFRD-KIFSGHS-DGTIKVWTGRGSILHLIQQI----REHTKAVTGLAILQS---GEMLYSG-S--LDKT 878 (1094)
Q Consensus 811 ~h~~~V~~l~fspd-~LaSgs~-Dg~I~vWd~~t~~~~~~~~l----~~H~~~V~sv~fspd---g~~LaSg-s--~Dgt 878 (1094)
..-...+.|+|.|| .++.+.. .|.|++++..++....+..+ ....+....|+|+|+ +..|+.. + .++.
T Consensus 29 ~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~ 108 (347)
T 3das_A 29 TGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR 108 (347)
T ss_dssp CCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred cCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence 33456789999997 4555555 89999998766643333333 233567899999995 3444432 2 3445
Q ss_pred EEEEECCCC-----c---eEEE-EecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEE
Q 001349 879 ARVWSIGNE-----E---IHCV-QVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVY 949 (1094)
Q Consensus 879 I~vWdi~~~-----~---~~~~-~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~ 949 (1094)
|.-|....+ . .+.+ ..... . -......+.|.|||...+.....+... .. ...
T Consensus 109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~-~----~~H~g~~l~fgpDG~Lyvt~Gd~~~~~--~~-qd~----------- 169 (347)
T 3das_A 109 IVRMLYDEKKPSGEQLGAPDTVFRGIPK-G----VIHNGGRIAFGPDKMLYAGTGESGDTG--LS-QDR----------- 169 (347)
T ss_dssp EEEEEBCTTSCTTCCBCCCEEEEEEECC-C----SSCCCCCEEECTTSCEEEECBCTTCGG--GT-TCT-----------
T ss_pred EEEEEeCCCCcccccCCCcEEEEEcCCC-C----CCccCccccCCCCCCEEEEECCCCCCc--cc-cCC-----------
Confidence 655665542 1 1111 11110 0 011223456888886544332221100 00 000
Q ss_pred EEEcCCeEEEEECCCCceeE--Eeccc-eeecCCCCCeEEEEEeCCccEEEEEE-CCC-CEEEEEEC--------CCC--
Q 001349 950 CGCQDGAIQEIDLATGTFAT--IQTGH-RKLLGKANPVHALQVHNGLVYTASTS-LDG-AAVKMWST--------SNY-- 1014 (1094)
Q Consensus 950 sgs~Dg~I~iwDl~~~~~~~--~~~~~-~~~~~h~~~V~sl~fs~~~~~las~s-~Dg-~~I~iwd~--------~~~-- 1014 (1094)
....|.|.-++... +... .+... .--.+|. ....++|++++.+.++-. .++ ..|.+..- ..+
T Consensus 170 -~~~~G~IlRi~~dG-~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~ 246 (347)
T 3das_A 170 -KSLGGKILRMTPDG-EPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKG 246 (347)
T ss_dssp -TCSTTCEEEECTTS-SBCTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSC
T ss_pred -CCCCCEEEEEeCCC-CccCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCC
Confidence 00123333333321 1000 00000 0112333 345677877665544432 221 02222210 000
Q ss_pred ------eEEEEecCC-CCEEEEEEeCCEEEEEE-cCCeEEEEECCCCcE---EEEecccCCcceEEEEEcCCCCEEEEEe
Q 001349 1015 ------NMVGSLPTL-SEVRAMVVSSELVYLGC-KGGTVEIWDQKRQIR---IETLQTGTSGKVQCMALDDNEEFLVIGT 1083 (1094)
Q Consensus 1015 ------~~~~~~~~~-~~v~~l~~spd~l~sgs-~dg~I~vwd~~t~~~---~~~l~~~h~~~I~~l~~Spdg~~L~sgs 1083 (1094)
.++..+.+. .....++|....++.+. ..+.|....+..... ...+..+..+++.+|+..|||.++++.+
T Consensus 247 ~~~~~~~P~~~~~~~~~ap~G~~~~~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 247 GGSGFHDPVAQWSTDEASPSGIAYAEGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp CCTTCCCCSEEECTTTCCEEEEEEETTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred CCccccCCcEecCCCCCCCcceEEEcCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 122333322 46778888877555554 445666666554432 1233234456899999999998766644
No 451
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=92.35 E-value=15 Score=40.12 Aligned_cols=202 Identities=10% Similarity=0.140 Sum_probs=119.5
Q ss_pred CcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCC-----------CCceEEEEeC
Q 001349 877 KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS-----------KYPKCLALVQ 945 (1094)
Q Consensus 877 gtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~-----------~~v~~l~~s~ 945 (1094)
.+|.|.|+..+.. +..-....+....+|..+.++... ...+++++.. ..|.-..|-.
T Consensus 49 ~~VvIiDl~n~~~-----------~~Rrpi~AdsAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~e~VvfWkWis 116 (365)
T 2xzh_A 49 AQVVIIDMNDPSN-----------PIRRPISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWIS 116 (365)
T ss_dssp EEEEEEETTSTTS-----------CEEEECCCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCEEEEEECS
T ss_pred CEEEEEECCCCCC-----------ccccccccceeeeCCCccEEEEec-CCeEEEechHHhhhhcceecCCccEEEEecC
Confidence 3677777776532 111112233344788888777775 6778888753 3444455543
Q ss_pred -CEEEEEEcCCeEEEEECCC-CceeEEeccceeecCCCCCeEEEEEeCCccEEEEEEC---CC---CEEEEEECCCCeEE
Q 001349 946 -GKVYCGCQDGAIQEIDLAT-GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSL---DG---AAVKMWSTSNYNMV 1017 (1094)
Q Consensus 946 -~~l~sgs~Dg~I~iwDl~~-~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~---Dg---~~I~iwd~~~~~~~ 1017 (1094)
..|+.. .+..|+.|++.. ..+...+..+..+. ...|.....+++..+++..+. ++ +.+.+|..+.+..
T Consensus 117 ~~~L~lV-T~taVyHWs~~~~s~P~kvFdR~~~L~--~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s- 192 (365)
T 2xzh_A 117 LNTVALV-TDNAVYHWSMEGESQPVKMFDRHSSLA--GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS- 192 (365)
T ss_dssp SSEEEEE-ESSEEEEEESSTTCCCEEEEECCGGGT--TCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE-
T ss_pred CCeEEEE-cCCcEEEEcccCCCCCceeeecchhcc--cceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccccc-
Confidence 444444 357899999975 34555555544443 356777777888887766543 22 3788999876543
Q ss_pred EEec-CCCCEEEEEEeCC-----EEEEEEc---CCeEEEEECCCC--------cEEEEecc---cCCcceEEEEEcCCCC
Q 001349 1018 GSLP-TLSEVRAMVVSSE-----LVYLGCK---GGTVEIWDQKRQ--------IRIETLQT---GTSGKVQCMALDDNEE 1077 (1094)
Q Consensus 1018 ~~~~-~~~~v~~l~~spd-----~l~sgs~---dg~I~vwd~~t~--------~~~~~l~~---~h~~~I~~l~~Spdg~ 1077 (1094)
+.+. |......+.+..+ .+..+.. .+.++|-++... +....+.. ...+...++..|+...
T Consensus 193 Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kyg 272 (365)
T 2xzh_A 193 QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD 272 (365)
T ss_dssp EEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTT
T ss_pred ceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCC
Confidence 3333 3233333333322 2333322 268999987542 11111111 2245677888999889
Q ss_pred EEEEEeCCCcEEEEeCC
Q 001349 1078 FLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1078 ~L~sgs~DG~I~iWdls 1094 (1094)
.++.-+.-|.|++||+.
T Consensus 273 viyviTK~G~ihlyDle 289 (365)
T 2xzh_A 273 VVFLITKYGYIHLYDLE 289 (365)
T ss_dssp EEEEEETTSEEEEEETT
T ss_pred EEEEEeCCcEEEEEEcc
Confidence 99999999999999974
No 452
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=91.65 E-value=0.11 Score=57.32 Aligned_cols=62 Identities=11% Similarity=0.288 Sum_probs=48.5
Q ss_pred ceeccCccccccCcEE-cCCccc--ccHHhHHHHHHh-CCCCCCCCCcCCCCCCCCChhHHHHHHHH
Q 001349 163 DFVCPITTHIFDDPVT-LETGQT--YERRAIQEWIER-GNSSCPITRQKLSSTKLPKTNYVLKRLIA 225 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~-~~cGht--fc~~ci~~~~~~-~~~~CP~c~~~~~~~~~~~pN~~l~~~i~ 225 (1094)
.+.|||....|+.|+- ..|.|. |+...+.....+ +.-.||+|.+.+...++. .+..+.++++
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~-ID~~~~~IL~ 314 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLA-ISEFVDDILQ 314 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEE-EBHHHHHHHT
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHee-EcHHHHHHHH
Confidence 5889999999999997 589998 666555554433 345699999999998987 7777776654
No 453
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=91.39 E-value=7.7 Score=43.98 Aligned_cols=131 Identities=10% Similarity=0.052 Sum_probs=87.7
Q ss_pred cCCeEEEEECCCCceeEEeccceeecC--CCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCe------------EEE
Q 001349 953 QDGAIQEIDLATGTFATIQTGHRKLLG--KANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN------------MVG 1018 (1094)
Q Consensus 953 ~Dg~I~iwDl~~~~~~~~~~~~~~~~~--h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~------------~~~ 1018 (1094)
.++.||.-++..+.....+. ... .-..|..+..+|+|.+++..+.. .|.|-.+..+. ..+
T Consensus 39 ~~n~iR~~~i~~~~~Yk~L~----~~~~i~f~~i~qlvlSpsG~lLAl~g~~--~V~Vv~LP~~~~~~~~~~~~~~~q~~ 112 (452)
T 3pbp_A 39 QDNIIRWYNVLTDSLYHSLN----FSRHLVLDDTFHVISSTSGDLLCLFNDN--EIFVMEVPWGYSNVEDVSIQDAFQIF 112 (452)
T ss_dssp ETTEEEEEETTTCSSCEEEE----CTTTCCCCTTCEEEECTTSSEEEEECSS--EEEEEECCTTCSCCCCHHHHHTTEEE
T ss_pred ECCEEEEEECCCCCcceEEe----cCcccccCceeEEEECCCCCEEEEecCC--eEEEEEecCccccCccccccccccee
Confidence 45778887877443221111 111 11357789999999999998654 79999887321 122
Q ss_pred Eec-------CCCCEEEEEEeCC-----EEEEEEcCCeEEEEECCCCc--EEEEec--------ccCCcceEEEEEcCCC
Q 001349 1019 SLP-------TLSEVRAMVVSSE-----LVYLGCKGGTVEIWDQKRQI--RIETLQ--------TGTSGKVQCMALDDNE 1076 (1094)
Q Consensus 1019 ~~~-------~~~~v~~l~~spd-----~l~sgs~dg~I~vwd~~t~~--~~~~l~--------~~h~~~I~~l~~Spdg 1076 (1094)
++. ....|..+.|+|- .+++-..|++|++||+.... +. .+. ......|.+++|.+++
T Consensus 113 ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~ 191 (452)
T 3pbp_A 113 HYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDG 191 (452)
T ss_dssp EEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTS
T ss_pred EEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCC
Confidence 333 1467999999995 79999999999999997522 22 332 1122478999999988
Q ss_pred CEEEEEe--CCCcEEE
Q 001349 1077 EFLVIGT--SDGRIQA 1090 (1094)
Q Consensus 1077 ~~L~sgs--~DG~I~i 1090 (1094)
-.|...+ .+|-|+-
T Consensus 192 lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 192 LTLYCLNTTEGGDIFA 207 (452)
T ss_dssp SCEEEEECTTSCEEEE
T ss_pred cEEEEEecCCCCCEEE
Confidence 7777755 7787764
No 454
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=91.27 E-value=6.8 Score=46.39 Aligned_cols=296 Identities=12% Similarity=0.058 Sum_probs=155.0
Q ss_pred HHHHHHHHHhhhccccchHhHHHHHHHHHHHHHhccchHHHHhhchhHHHhhhHhhhcc--CCchHHHHHHHHHHHhhcc
Q 001349 266 ITELKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFN--SVDPRVLEATIFLLSELGS 343 (1094)
Q Consensus 266 ~~~l~~~i~~L~~s~~l~~~e~a~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~v~~L~~--s~~~~v~~~av~~L~~l~s 343 (1094)
...+...+..+.+.+. ..+..|+..+..++...+.. ...+.+++.|.. +.+..++..+...|.++..
T Consensus 9 ~~~i~~l~~~l~s~~~-~~R~~A~~~l~~i~~~~~~~----------~~~~~l~~~L~~~~d~~~~vr~~~~~~L~~~~~ 77 (588)
T 1b3u_A 9 LYPIAVLIDELRNEDV-QLRLNSIKKLSTIALALGVE----------RTRSELLPFLTDTIYDEDEVLLALAEQLGTFTT 77 (588)
T ss_dssp SHHHHHHHHHTTCSCH-HHHHHHHHTHHHHHHHSCHH----------HHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSG
T ss_pred cCcHHHHHHHhhcccH-HHHHHHHHhHHHHHHHhCHH----------HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHh
Confidence 3456667777765443 43566666666665433221 112223333322 4567888888888887743
Q ss_pred cc--cchhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCC-ChHHHHHhhhhHHHHHHHHhccccccccccCchh
Q 001349 344 RD--KSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRP-STRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKS 416 (1094)
Q Consensus 344 ~~--~~~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~-~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~ 416 (1094)
.- .... ..-++.|..++... +..|...|..+.. .+.+.. ...+-+++..+..+. +. ..+.
T Consensus 78 ~~~~~~~~------~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~-~~~l~~~l~~l~~~~-~~-----~~R~ 144 (588)
T 1b3u_A 78 LVGGPEYV------HCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDL-EAHFVPLVKRLAGGD-WF-----TSRT 144 (588)
T ss_dssp GGTSGGGG------GGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHH-HHTHHHHHHHHHTCS-SH-----HHHH
T ss_pred ccCcHHHH------HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHhcCC-Cc-----HHHH
Confidence 31 1111 11224444444433 5566677777633 222211 112223333333222 11 1245
Q ss_pred hHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHH
Q 001349 417 VSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESF 496 (1094)
Q Consensus 417 aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~ 496 (1094)
+|..++..+...... ......++.+...+...+.+.|..|+..|......-+.- .+ ...-++.++.++
T Consensus 145 ~a~~~l~~~~~~~~~---------~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~-~~--~~~l~~~l~~~~ 212 (588)
T 1b3u_A 145 SACGLFSVCYPRVSS---------AVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD-NV--KSEIIPMFSNLA 212 (588)
T ss_dssp HHGGGHHHHTTTSCH---------HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH-HH--HHTHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH-hH--HHHHHHHHHHHh
Confidence 555566655433210 112345688888888889999999998887766554321 11 112234555566
Q ss_pred HhcCCchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCcc
Q 001349 497 MAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIY 576 (1094)
Q Consensus 497 ~~~~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~~~~~ 576 (1094)
.......|..|+..|..+...-... .... ..+..+..+++.....-+-.++..|.++--...+ ..|
T Consensus 213 ~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~--------~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~ 278 (588)
T 1b3u_A 213 SDEQDSVRLLAVEACVNIAQLLPQE---DLEA--------LVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EIT 278 (588)
T ss_dssp TCSCHHHHTTHHHHHHHHHHHSCHH---HHHH--------HTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHH
T ss_pred cCCcHHHHHHHHHHHHHHHHhCCHH---HHHH--------HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccc
Confidence 6666667777777777665431110 0000 1222333444333333345666666665443222 235
Q ss_pred HHHHHHHHHHHhhcCCChHHHHHHHHHHHhcccccc
Q 001349 577 REEAIDTLISCLRNSDYPAAQLAAAKTIVSLQGRFT 612 (1094)
Q Consensus 577 reea~~~~~~~l~~~~~~~~~~~~~~~~~~l~g~~s 612 (1094)
.++.++.++..+... .+.++..|+.+|..++..+.
T Consensus 279 ~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~ 313 (588)
T 1b3u_A 279 KTDLVPAFQNLMKDC-EAEVRAAASHKVKEFCENLS 313 (588)
T ss_dssp HHTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHTSC
T ss_pred hhHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHhC
Confidence 677888888888643 45788899999988776553
No 455
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=91.11 E-value=0.27 Score=54.62 Aligned_cols=111 Identities=15% Similarity=0.132 Sum_probs=72.1
Q ss_pred CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEE---eCCccEEEEE-ECCCCEEEEEECCCCeEEEEec
Q 001349 946 GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQV---HNGLVYTAST-SLDGAAVKMWSTSNYNMVGSLP 1021 (1094)
Q Consensus 946 ~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~f---s~~~~~las~-s~Dg~~I~iwd~~~~~~~~~~~ 1021 (1094)
+.+++++.||.|+-+|..+|+....+... ...++....- ..++..++.. +.|| .|..+|..+|.....+.
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~-----~~~p~~~~~~~~~~~~~~~~vv~p~~dG-~l~a~~~~~G~~~~~~~ 84 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPE-----NFQPLIEIQEPSRLETYETLIIEPFGDG-NIYYFNAHQGLQKLPLS 84 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGG-----GSCCSEECCCSCTTTSSEEEEECCSTTT-EEEEEETTTEEEEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCC-----ccCCcEEecCCccccCCcEEEEEECCCC-EEEEEECCCCcEEeeec
Confidence 46899999999999999999988765432 1111111110 0122333332 4565 89999988886555444
Q ss_pred -----CCCCEEE---EEE-------eCCEEEEEEcCCeEEEEECCCCcEEEEeccc
Q 001349 1022 -----TLSEVRA---MVV-------SSELVYLGCKGGTVEIWDQKRQIRIETLQTG 1062 (1094)
Q Consensus 1022 -----~~~~v~~---l~~-------spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~ 1062 (1094)
..+++.. ..+ ..+.+++|+.+|.+...|..+|+.+..+..+
T Consensus 85 ~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 85 IRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp HHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred cccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 2223321 111 3448899999999999999999999999644
No 456
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=91.00 E-value=22 Score=39.35 Aligned_cols=94 Identities=10% Similarity=-0.031 Sum_probs=53.9
Q ss_pred cccccCcEEEEeeCCCCeEEEeCCcceeec------ccCCCcEEEEEEeCC-----EEEEEEC----C----CeEEEEec
Q 001349 780 PLAFEMVKVLSNGHDSSADFWNHRELVHVD------SSENGKVLSIACFRD-----KIFSGHS----D----GTIKVWTG 840 (1094)
Q Consensus 780 ~~~~d~~~l~s~s~dg~I~vWd~~~~~~~~------~~h~~~V~~l~fspd-----~LaSgs~----D----g~I~vWd~ 840 (1094)
.+.+++. ++.+..+|.|.+++.... ..+ .........|+|+|+ .|+.+.. + +.|..|+.
T Consensus 35 a~~pdG~-l~V~e~~g~I~~~d~~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~ 112 (354)
T 3a9g_A 35 APLGGGR-YLVTERPGRLVLISPSGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRL 112 (354)
T ss_dssp EEEETTE-EEEEETTTEEEEECSSCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEE
T ss_pred EEcCCCe-EEEEeCCCEEEEEeCCCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEE
Confidence 3455676 444556689988874422 211 122456899999985 5555443 3 56777877
Q ss_pred CCC--cc---eeE-EEecc-cCCCeEEEEEecCCCEEEEEeC
Q 001349 841 RGS--IL---HLI-QQIRE-HTKAVTGLAILQSGEMLYSGSL 875 (1094)
Q Consensus 841 ~t~--~~---~~~-~~l~~-H~~~V~sv~fspdg~~LaSgs~ 875 (1094)
..+ .. +.+ ..+.. .......++|.|||.+.++.+.
T Consensus 113 ~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~ 154 (354)
T 3a9g_A 113 DGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGD 154 (354)
T ss_dssp CSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCC
T ss_pred CCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECC
Confidence 654 11 111 22221 1112467999999987776543
No 457
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=90.52 E-value=32 Score=43.03 Aligned_cols=311 Identities=12% Similarity=0.139 Sum_probs=151.8
Q ss_pred hHHHHHHHHHHHHHhccchHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcH----H
Q 001349 285 SEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDV----E 360 (1094)
Q Consensus 285 ~e~a~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~----~ 360 (1094)
+..+...|..+++.... ..-|.++..+++.+. +.+..+++.++.+|..+.......... ......+ +
T Consensus 107 r~~~a~~i~~ia~~~~~-------~~wp~ll~~L~~~l~-~~~~~~r~~al~~L~~i~~~~~~~~~~-~~~~~~~~~il~ 177 (852)
T 4fdd_A 107 RATVGILITTIASKGEL-------QNWPDLLPKLCSLLD-SEDYNTCEGAFGALQKICEDSAEILDS-DVLDRPLNIMIP 177 (852)
T ss_dssp HHHHHHHHHHHHHHTTT-------TTCTTHHHHHHHHHS-CSSHHHHHHHHHHHHHHHHHHTTHHHH-CSSSSCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCc-------cccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhHHHhch-hhhcchHHHHHH
Confidence 34444445555544321 123445555555543 567888999999988775332211110 0001123 3
Q ss_pred HHHHHHhcC----hHHHHHHHHhcCCChHH-H-HHh-hhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccc
Q 001349 361 RIVALFKKG----LLEAVVLIDLLRPSTRT-L-IEM-DMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESI 433 (1094)
Q Consensus 361 ~L~~lLk~g----~~~Aa~~l~~L~~~~~~-~-~~~-~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~ 433 (1094)
.|+..++.. +..|..+|..+-....+ . ..+ +.++.|+..+..+..+ -+.++...|..|+.......
T Consensus 178 ~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~-------vr~~a~~~L~~l~~~~~~~~ 250 (852)
T 4fdd_A 178 KFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPE-------VRKNVCRALVMLLEVRMDRL 250 (852)
T ss_dssp HHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHH-------HHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHH-------HHHHHHHHHHHHHHhCHHHH
Confidence 334444433 45666677655332221 1 111 3346777665543211 13455556666654332111
Q ss_pred cccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHH----HHH----------hc
Q 001349 434 VSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVME----SFM----------AA 499 (1094)
Q Consensus 434 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~----l~~----------~~ 499 (1094)
.+ .-.+.++.++..+...+.+-|..|...+..+++. ..+++++.. .+..++. .+. ..
T Consensus 251 ~~------~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~-~~~~~~~~~--~~~~l~p~ll~~l~~~e~d~~~~~~d 321 (852)
T 4fdd_A 251 LP------HMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQ-PICKDVLVR--HLPKLIPVLVNGMKYSDIDIILLKGD 321 (852)
T ss_dssp GG------GHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTS-TTHHHHHTT--THHHHHHHHHHHTSCCHHHHHHHHC-
T ss_pred HH------HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcc-hhHHHHHHH--HHHHHHHHHHHHcCCcHhHHHHhcCC
Confidence 11 1124568888888877777788888777665432 245554322 1222222 220 11
Q ss_pred ------------CCchhHHHHHHHHHHHhc-------------------c---ccchhHHHHHHhhhcCc-------chh
Q 001349 500 ------------SDGERFEIVCFLSELVKL-------------------N---RRTFNEQILHIIKDEGT-------YSS 538 (1094)
Q Consensus 500 ------------~~~~~~~~~~~l~el~~~-------------------~---r~~~~~~~l~~i~~~~~-------~~~ 538 (1094)
.-..|..+...|..|... + .|..+...+..|-+... -..
T Consensus 322 ~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~ 401 (852)
T 4fdd_A 322 VEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPEL 401 (852)
T ss_dssp -----------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHH
T ss_pred cccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 011133333333222221 1 12223333333332211 112
Q ss_pred HHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhcccccccCChhh
Q 001349 539 MHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQGRFTTSGKSL 618 (1094)
Q Consensus 539 ~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~~~~~reea~~~~~~~l~~~~~~~~~~~~~~~~~~l~g~~s~~g~~~ 618 (1094)
+..++..++...+.=+-.++..|.++.-...+.....|-.+.+..|+..|.+. .+.+|..|+.+|.++.-.....=.||
T Consensus 402 l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~-~~~vr~~a~~aL~~l~~~~~~~l~~~ 480 (852)
T 4fdd_A 402 IPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDS-NKRVQEAACSAFATLEEEACTELVPY 480 (852)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHGGGGGGG
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHhhHhhHhH
Confidence 23344444433333344566677776654333345678899999999999765 46889999999999874433322344
Q ss_pred HHH
Q 001349 619 TRA 621 (1094)
Q Consensus 619 ~~~ 621 (1094)
...
T Consensus 481 l~~ 483 (852)
T 4fdd_A 481 LAY 483 (852)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 458
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=90.50 E-value=2.8 Score=50.46 Aligned_cols=256 Identities=13% Similarity=0.175 Sum_probs=139.3
Q ss_pred ccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCCChHHH----HHhhhhH
Q 001349 323 FNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPSTRTL----IEMDMME 394 (1094)
Q Consensus 323 ~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~~~~~----~~~~~~~ 394 (1094)
+.+.++.|.+.|+..|..+...++.... ..+.++.|..+|... ...|+.+|+.+.....+. .....++
T Consensus 130 L~d~~~~VRk~A~~al~~i~~~~p~~~~----~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~ 205 (591)
T 2vgl_B 130 LKDEDPYVRKTAAVCVAKLHDINAQMVE----DQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNIN 205 (591)
T ss_dssp SSCSCHHHHHHHHHHHHHHHHSSCCCHH----HHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHhhChhhcc----cccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHH
Confidence 3478899999999999988665553322 123447777777643 567778898886654321 1112235
Q ss_pred HHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhh
Q 001349 395 SLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQ 474 (1094)
Q Consensus 395 ~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~ 474 (1094)
.|+..|...++ -+-+.++..| +... ..... .....++.+...+++.+..-+..|+..+..+..
T Consensus 206 ~Ll~~l~~~~~----------~~q~~il~~l-~~l~--~~~~~----~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~ 268 (591)
T 2vgl_B 206 KLLTALNECTE----------WGQIFILDCL-SNYN--PKDDR----EAQSICERVTPRLSHANSAVVLSAVKVLMKFLE 268 (591)
T ss_dssp HHHHHHHHCCH----------HHHHHHHHHH-HTSC--CCSHH----HHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCC
T ss_pred HHHHcCCCCCc----------hHHHHHHHHH-HHhC--CCChH----HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhh
Confidence 56666554332 1223333322 2221 10000 013456778888888788888888887776543
Q ss_pred c---cCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHHHHhccc--------------------cchhHHHHHHhh
Q 001349 475 E---DGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNR--------------------RTFNEQILHIIK 531 (1094)
Q Consensus 475 ~---~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el~~~~r--------------------~~~~~~~l~~i~ 531 (1094)
. +...-..+.+ ...++++.|+ +.....|..++..|..+..... |..+.++|-.+.
T Consensus 269 ~~~~~~~~~~~~~~-~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~ 346 (591)
T 2vgl_B 269 LLPKDSDYYNMLLK-KLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLA 346 (591)
T ss_dssp SCCBTTBSHHHHHH-HTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTC
T ss_pred ccCCCHHHHHHHHH-HHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHC
Confidence 1 1121111222 2235777665 4566678888888888775321 012334444455
Q ss_pred hcCcc-hhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhc
Q 001349 532 DEGTY-SSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSL 607 (1094)
Q Consensus 532 ~~~~~-~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~~~~~reea~~~~~~~l~~~~~~~~~~~~~~~~~~l 607 (1094)
++..+ ..+.-|+.|++....+-+.-++.-+.++.. ++.-.-+..++.|+..|+... +.+...+..++..+
T Consensus 347 ~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~-----~~~~~~~~~v~~Ll~ll~~~~-~~v~~e~i~~l~~i 417 (591)
T 2vgl_B 347 SQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAI-----KVEQSAERCVSTLLDLIQTKV-NYVVQEAIVVIRDI 417 (591)
T ss_dssp CSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHTCC-HHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-----hChhHHHHHHHHHHHHHcccc-hHHHHHHHHHHHHH
Confidence 55433 355667777776666666666666666554 222223566677776666543 23333344444443
No 459
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=90.42 E-value=5 Score=44.36 Aligned_cols=65 Identities=6% Similarity=0.011 Sum_probs=34.6
Q ss_pred EEEEEEC-CCeEEEEecCC--CcceeEEEecccCCCeEEEEEecCCCEEEEEeC-C---------CcEEEEECCCCceE
Q 001349 825 KIFSGHS-DGTIKVWTGRG--SILHLIQQIREHTKAVTGLAILQSGEMLYSGSL-D---------KTARVWSIGNEEIH 890 (1094)
Q Consensus 825 ~LaSgs~-Dg~I~vWd~~t--~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~-D---------gtI~vWdi~~~~~~ 890 (1094)
+++.|+. ...+.++|..+ ..+..+..+......-.+++. -++.+++.|+. + ..+.+||..+++..
T Consensus 22 iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~ 99 (357)
T 2uvk_A 22 VYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF-IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWV 99 (357)
T ss_dssp EEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEE-ETTEEEEECCEEECTTSCEEECCCEEEEETTTTEEE
T ss_pred EEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEE-ECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEE
Confidence 4445543 45788889874 545444433311111112222 25667777765 2 35788888876543
No 460
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=89.42 E-value=0.23 Score=54.67 Aligned_cols=63 Identities=13% Similarity=0.314 Sum_probs=49.5
Q ss_pred ceeccCccccccCcEE-cCCccc--ccHHhHHHHHHh-CCCCCCCCCcCCCCCCCCChhHHHHHHHHH
Q 001349 163 DFVCPITTHIFDDPVT-LETGQT--YERRAIQEWIER-GNSSCPITRQKLSSTKLPKTNYVLKRLIAS 226 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~-~~cGht--fc~~ci~~~~~~-~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~ 226 (1094)
.+.|||....|+.|+- ..|.|. |+...+...... +.-.||+|++.+...++. .+..+.+++..
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~-ID~~~~~IL~~ 281 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLI-LDGLFMEILND 281 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEE-EBHHHHHHHTT
T ss_pred eeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeE-EcHHHHHHHHh
Confidence 6899999999999997 589998 776666554443 345699999999988887 77777776653
No 461
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=88.98 E-value=0.47 Score=40.34 Aligned_cols=47 Identities=19% Similarity=0.292 Sum_probs=37.7
Q ss_pred ceeccCcccccc-----CcEEc--CCcccccHHhHHHHHHhCCCCCCCCCcCCC
Q 001349 163 DFVCPITTHIFD-----DPVTL--ETGQTYERRAIQEWIERGNSSCPITRQKLS 209 (1094)
Q Consensus 163 ~~~CpIc~~~~~-----dPv~~--~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~ 209 (1094)
.-.|.||.+-.- +|.+. .|+...||.|.+-=...++..||.|+.++.
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 357999998632 35554 699999999999877788889999998876
No 462
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=88.88 E-value=37 Score=40.43 Aligned_cols=73 Identities=11% Similarity=0.143 Sum_probs=45.4
Q ss_pred HHHHHHHHhhhccccchHhHHHHHHHHHHHHHhccchHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhccccc
Q 001349 267 TELKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDK 346 (1094)
Q Consensus 267 ~~l~~~i~~L~~s~~l~~~e~a~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~ 346 (1094)
+.+-..+.++..+..-..+..|+..+.++++...+.. ..+.+++.+.++| .+.+..|+.+|+.+|.++...+.
T Consensus 120 ~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~------~~~~~~~~l~~lL-~d~d~~V~~~A~~aL~~i~~~~~ 192 (591)
T 2vgl_B 120 EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV------EDQGFLDSLRDLI-ADSNPMVVANAVAALSEISESHP 192 (591)
T ss_dssp HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH------HHHHHHHHHHHTT-SCSCHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc------ccccHHHHHHHHh-CCCChhHHHHHHHHHHHHHhhCC
Confidence 3334444444444444557788888888887543311 1123455555555 46889999999999999865543
No 463
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=88.78 E-value=7 Score=46.27 Aligned_cols=144 Identities=10% Similarity=0.069 Sum_probs=65.0
Q ss_pred HHhhhHhhhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCCCh-HHHH
Q 001349 314 VINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPST-RTLI 388 (1094)
Q Consensus 314 v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~~-~~~~ 388 (1094)
++..++..+ .+.+..|.+.+...|..+...-......-.-.+.-++.|..+++.. +..|+.+|..+...- .+..
T Consensus 282 l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~ 360 (588)
T 1b3u_A 282 LVPAFQNLM-KDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNT 360 (588)
T ss_dssp HHHHHHHHH-TCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHH
T ss_pred HHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHH
Confidence 444444444 3567888999988888775432110000000112236666666554 334444444443211 1111
Q ss_pred HhhhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHH
Q 001349 389 EMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGI 468 (1094)
Q Consensus 389 ~~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 468 (1094)
.-..+|.++..+...... . +.+++..+..+...++. .......+|.|...++..+.+.|..++..
T Consensus 361 ~~~l~p~l~~~l~d~~~~-V------r~~a~~~l~~l~~~~~~--------~~~~~~~lp~l~~~~~d~~~~vr~~~~~~ 425 (588)
T 1b3u_A 361 IEHLLPLFLAQLKDECPE-V------RLNIISNLDCVNEVIGI--------RQLSQSLLPAIVELAEDAKWRVRLAIIEY 425 (588)
T ss_dssp HHHTHHHHHHHHTCSCHH-H------HHHHHTTCHHHHHHSCH--------HHHHHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCchH-H------HHHHHHHHHHHHHhcCH--------HHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 112337777777643211 1 22333333333221110 00112345666666666666666666555
Q ss_pred HHHHh
Q 001349 469 LLRCM 473 (1094)
Q Consensus 469 l~~~~ 473 (1094)
|-...
T Consensus 426 l~~l~ 430 (588)
T 1b3u_A 426 MPLLA 430 (588)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 464
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=88.63 E-value=0.33 Score=50.91 Aligned_cols=49 Identities=10% Similarity=0.260 Sum_probs=39.6
Q ss_pred ceeccCccccccCcEEc-CCcccccHHhHHHHHHhC-CCCCCCCCcCCCCC
Q 001349 163 DFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERG-NSSCPITRQKLSST 211 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~~-~cGhtfc~~ci~~~~~~~-~~~CP~c~~~~~~~ 211 (1094)
-..|.||.++...-+.- .|+|.|=..|+..|++.. ...||.|+...+..
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 45699999999976654 499999999999999753 44799999876544
No 465
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=88.40 E-value=25 Score=37.45 Aligned_cols=67 Identities=15% Similarity=0.043 Sum_probs=39.2
Q ss_pred CcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 001349 814 GKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGN 886 (1094)
Q Consensus 814 ~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~ 886 (1094)
..|..|+......+.-. ||.|..|-..... .+..-......|..|+...+. .++. . ||.|..|-...
T Consensus 24 ~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~G--qlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~ 90 (282)
T 3qhy_B 24 SGVDAIAGGYFHGLALK-GGKVLGWGANLNG--QLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNE 90 (282)
T ss_dssp SSCCEEEECSSEEEEEE-TTEEEEEECCSSS--TTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCT
T ss_pred CCCcEEEeCCCeEEEEE-CCEEEEEeCCCCC--CCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCC
Confidence 46888888777433335 9999999755421 111111123457777765432 3333 4 89999997654
No 466
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=88.18 E-value=2.8 Score=51.41 Aligned_cols=208 Identities=13% Similarity=0.082 Sum_probs=116.7
Q ss_pred HHHHHHHHhhhccccchHhHHHHHHHHHHHHHhccchHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhccc-c
Q 001349 267 TELKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSR-D 345 (1094)
Q Consensus 267 ~~l~~~i~~L~~s~~l~~~e~a~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~-~ 345 (1094)
+.+-..+.+|.+. ...+++.|...|..++.+. ..+.. +.+..++.-++.-++...+..|+++|..+|.+|... .
T Consensus 34 ~~i~Pll~~L~S~-~~~~r~~A~~al~~l~~~~-~~~~l---~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g 108 (684)
T 4gmo_A 34 DKILPVLKDLKSP-DAKSRTTAAGAIANIVQDA-KCRKL---LLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEE 108 (684)
T ss_dssp HTTHHHHHHHSSS-CCSHHHHHHHHHHHHTTSH-HHHHH---HHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSC
T ss_pred hhHHHHHHHcCCC-CHHHHHHHHHHHHHHHcCc-HHHHH---HHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcC
Confidence 3445567777654 4466788888888887432 22222 233344444555556678899999999999999755 3
Q ss_pred cchhhhhccCCCcHHHHHHHHhcChHHHHHHHHhcCCCh-----HHHHH-hhhhHH---HHHHHHhccccccccccCchh
Q 001349 346 KSVIHTLTRVESDVERIVALFKKGLLEAVVLIDLLRPST-----RTLIE-MDMMES---LMTVIKKKEEDFLKMCLKPKS 416 (1094)
Q Consensus 346 ~~~~~~i~~~~~~~~~L~~lLk~g~~~Aa~~l~~L~~~~-----~~~~~-~~~~~~---Ll~~l~~~~~~~~~~~~~~~~ 416 (1094)
..++..+.+.+ .+++|..+|++.. ..+..+.+.. ..... .+..+. +|..|++++
T Consensus 109 ~d~~~~l~~~~-il~~L~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s------------ 171 (684)
T 4gmo_A 109 ADFCVHLYRLD-VLTAIEHAAKAVL----ETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALAR------------ 171 (684)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH----HHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHC------------
T ss_pred chHHHHHHHcC-hHHHHHHHHHhhH----HHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCC------------
Confidence 56777777544 7788888887531 1122221111 11111 111122 222222222
Q ss_pred hHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhccc---HHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHH
Q 001349 417 VSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEW---AEERIAAVGILLRCMQEDGKCRNSIADKAELAPVM 493 (1094)
Q Consensus 417 aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~ 493 (1094)
.....+++..++++.|+..|...+ .+-+..|+..|..+...+...-..+.+.+....+.
T Consensus 172 ------------------~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~ 233 (684)
T 4gmo_A 172 ------------------DEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYD 233 (684)
T ss_dssp ------------------HHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHH
T ss_pred ------------------HHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHH
Confidence 223345667799999999986443 45677777777777666666666666655443332
Q ss_pred HHH--HhcCCchhHHHHHHHHHH
Q 001349 494 ESF--MAASDGERFEIVCFLSEL 514 (1094)
Q Consensus 494 ~l~--~~~~~~~~~~~~~~l~el 514 (1094)
-++ ...++..|..+...|..+
T Consensus 234 ~ll~~~~~~~~~~~la~giL~Ni 256 (684)
T 4gmo_A 234 VLLKLATGTDPRAVMACGVLHNV 256 (684)
T ss_dssp HHHHHHHSSCTTHHHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHhH
Confidence 232 234444455444444443
No 467
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=87.12 E-value=29 Score=39.28 Aligned_cols=277 Identities=11% Similarity=0.056 Sum_probs=140.0
Q ss_pred hHHHhhhHhhhccCC-chHHHHHHHHHHHhhcccc-cchhhhhccCCCcHHHHHHHHhcC------hHHHHHHHHhcCC-
Q 001349 312 PAVINGFVEILFNSV-DPRVLEATIFLLSELGSRD-KSVIHTLTRVESDVERIVALFKKG------LLEAVVLIDLLRP- 382 (1094)
Q Consensus 312 ~~v~~~~v~~L~~s~-~~~v~~~av~~L~~l~s~~-~~~~~~i~~~~~~~~~L~~lLk~g------~~~Aa~~l~~L~~- 382 (1094)
|.++..++..+..+. +..+.+.++.+|..+...- ........ +.-++.|+..|+.. +..|..++..+-.
T Consensus 127 ~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~ 204 (462)
T 1ibr_B 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS--NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF 204 (462)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH--HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 445555666655433 7888999999999885432 11111111 11235566666544 2456666665432
Q ss_pred ChHHHHHhhhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHH
Q 001349 383 STRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEER 462 (1094)
Q Consensus 383 ~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 462 (1094)
...+...-...+.++..|.....+.. -.-+.+++..+..+...+.... ...+....++.++..++..+.+-|
T Consensus 205 ~~~~~~~~~~~~~l~~~l~~~~~~~~---~~vr~~~~~~l~~l~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~v~ 276 (462)
T 1ibr_B 205 TKANFDKESERHFIMQVVCEATQCPD---TRVRVAALQNLVKIMSLYYQYM-----ETYMGPALFAITIEAMKSDIDEVA 276 (462)
T ss_dssp THHHHTSHHHHHHHHHHHHHHTTCSS---HHHHHHHHHHHHHHHHHCGGGC-----TTTTTTTHHHHHHHHHHCSSHHHH
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHcCCchHHH
Confidence 22222111111223444432211100 0113456666666654332111 011111556788888887788888
Q ss_pred HHHHHHHHHHhhcc------------------CcchhhHhhh--cCchhHHHHHHhc-------CCchhHHHHHHHHHHH
Q 001349 463 IAAVGILLRCMQED------------------GKCRNSIADK--AELAPVMESFMAA-------SDGERFEIVCFLSELV 515 (1094)
Q Consensus 463 ~~~~~~l~~~~~~~------------------~~~r~~~~~~--~~~~~~~~l~~~~-------~~~~~~~~~~~l~el~ 515 (1094)
..|...+..++... ..+..++... .-++.++..+... +...|..|...|..|.
T Consensus 277 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~ 356 (462)
T 1ibr_B 277 LQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLA 356 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHH
Confidence 88888877665542 1222222110 0112222333221 1244555666666654
Q ss_pred hccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCChH
Q 001349 516 KLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPA 595 (1094)
Q Consensus 516 ~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~~~~~reea~~~~~~~l~~~~~~~ 595 (1094)
..-... ++. ..+..+..+++......+--+...|..+.--.++.....|-.+.+..|+..|.+.. +.
T Consensus 357 ~~~~~~----~~~--------~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~-~~ 423 (462)
T 1ibr_B 357 TCCEDD----IVP--------HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPS-VV 423 (462)
T ss_dssp HHTTTT----HHH--------HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSC-HH
T ss_pred HhccHH----HHH--------HHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCC-HH
Confidence 431111 111 12333444555555555555666666655322223344556789999999997654 78
Q ss_pred HHHHHHHHHHhccccc
Q 001349 596 AQLAAAKTIVSLQGRF 611 (1094)
Q Consensus 596 ~~~~~~~~~~~l~g~~ 611 (1094)
++..|+.+|..++..+
T Consensus 424 Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 424 VRDTAAWTVGRICELL 439 (462)
T ss_dssp HHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999987554
No 468
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=86.56 E-value=43 Score=36.92 Aligned_cols=97 Identities=10% Similarity=0.052 Sum_probs=51.5
Q ss_pred ccccccCcEEEEeeCCCCeEEEeCCccee--------ecccCCCcEEEEEEeCC-----EEEEEE-C-------CCeEEE
Q 001349 779 SPLAFEMVKVLSNGHDSSADFWNHRELVH--------VDSSENGKVLSIACFRD-----KIFSGH-S-------DGTIKV 837 (1094)
Q Consensus 779 ~~~~~d~~~l~s~s~dg~I~vWd~~~~~~--------~~~~h~~~V~~l~fspd-----~LaSgs-~-------Dg~I~v 837 (1094)
..+.+++++++.+...|.|++++...... +.....+....++|+|+ .|+... . ...|..
T Consensus 23 i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r 102 (353)
T 2g8s_A 23 LAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGY 102 (353)
T ss_dssp EEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEE
T ss_pred EEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEE
Confidence 34556777344555678998887542211 11223456789999983 444332 2 235666
Q ss_pred EecCCC--cceeEE----Eecc---cCCCeEEEEEecCCCEEEEEeC
Q 001349 838 WTGRGS--ILHLIQ----QIRE---HTKAVTGLAILQSGEMLYSGSL 875 (1094)
Q Consensus 838 Wd~~t~--~~~~~~----~l~~---H~~~V~sv~fspdg~~LaSgs~ 875 (1094)
|+...+ ...... .+.. ....-..++|.|||.+.++.+.
T Consensus 103 ~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd 149 (353)
T 2g8s_A 103 GRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGE 149 (353)
T ss_dssp EEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECC
T ss_pred EEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECC
Confidence 666432 111111 1211 1112357999999966665543
No 469
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=86.25 E-value=15 Score=45.97 Aligned_cols=95 Identities=12% Similarity=0.083 Sum_probs=60.7
Q ss_pred hhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCc--chhhHhhhcCchhH
Q 001349 415 KSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGK--CRNSIADKAELAPV 492 (1094)
Q Consensus 415 ~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~--~r~~~~~~~~~~~~ 492 (1094)
+.+|+..+.++..+.+.. ..-.-...++.|+..+...+.+-|..|+..|.+.....+. ...++. .-++.+
T Consensus 376 R~aa~~alg~i~~~~~~~------~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~--~ll~~L 447 (852)
T 4fdd_A 376 KESGILVLGAIAEGCMQG------MIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLK--PLMTEL 447 (852)
T ss_dssp HHHHHHHHHHTTTTTHHH------HGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHH--HHHHHH
T ss_pred HHHHHHHHHHHHhcchHH------HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHH--HHHHHH
Confidence 678888898886655321 1113356779999999999999999888887665443211 111111 233456
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHhc
Q 001349 493 MESFMAASDGERFEIVCFLSELVKL 517 (1094)
Q Consensus 493 ~~l~~~~~~~~~~~~~~~l~el~~~ 517 (1094)
+..+...+.+.|..|...|..+...
T Consensus 448 ~~~L~d~~~~vr~~a~~aL~~l~~~ 472 (852)
T 4fdd_A 448 LKRILDSNKRVQEAACSAFATLEEE 472 (852)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 6666666667777887777777543
No 470
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=86.17 E-value=27 Score=45.64 Aligned_cols=180 Identities=10% Similarity=0.161 Sum_probs=102.5
Q ss_pred EEEeeCCCeEEEEEeCCeEEEEcC-----------CCCceEEEEeCCEEEEEEcCCeEEEEECCCC-ceeEEeccceeec
Q 001349 911 LCFIPQGAGIKVHLRNGKTKLLNS-----------SKYPKCLALVQGKVYCGCQDGAIQEIDLATG-TFATIQTGHRKLL 978 (1094)
Q Consensus 911 ~~fspdg~~l~~~~~~g~i~l~~~-----------~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~-~~~~~~~~~~~~~ 978 (1094)
...+|..+.++... ..++++|+. +..|.-..|-....+.--.+..|..|++... .+...+..+..+.
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~ 149 (1630)
T 1xi4_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLA 149 (1630)
T ss_pred hccCCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEEcCCeEEEeccCCCCccHHHHhcchhcc
Confidence 33677777776665 677888874 3445555665433333334678999999642 3333343333333
Q ss_pred CCCCCeEEEEEeCCccEEEEEEC---CC---CEEEEEECCCCeEEEEec-CCCCEEEEEEeCC----EEEE-EE---cCC
Q 001349 979 GKANPVHALQVHNGLVYTASTSL---DG---AAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE----LVYL-GC---KGG 1043 (1094)
Q Consensus 979 ~h~~~V~sl~fs~~~~~las~s~---Dg---~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd----~l~s-gs---~dg 1043 (1094)
...|.....+++..+++..+. +| |.+.+|+...+.. +.+. |......+.+..+ .+++ +. ..+
T Consensus 150 --~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s-Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~ 226 (1630)
T 1xi4_A 150 --GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGG 226 (1630)
T ss_pred --cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc-hhhhHhHhhhheeccCCCCCCceEEEEEEecCCCc
Confidence 356777777888887765543 11 3788888865432 2222 2222222222211 2222 22 136
Q ss_pred eEEEEECCCC---cE------EEEe-c-ccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1044 TVEIWDQKRQ---IR------IETL-Q-TGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1044 ~I~vwd~~t~---~~------~~~l-~-~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
.++|-++... .+ +..+ . ..-.+...++..|+....+...+.-|.|+++|+.
T Consensus 227 kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~ 288 (1630)
T 1xi4_A 227 KLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLE 288 (1630)
T ss_pred eEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecc
Confidence 8888887543 11 1111 0 1123456678888888889999999999999974
No 471
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=85.80 E-value=26 Score=35.99 Aligned_cols=99 Identities=9% Similarity=0.026 Sum_probs=58.6
Q ss_pred eEEEEEeCCccEEEEEECCCCEEEEEECCCCeEE------EEe-c-CCCCEEEEEEeCC-EEEEEEcCCeEEEEECCCCc
Q 001349 984 VHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMV------GSL-P-TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQI 1054 (1094)
Q Consensus 984 V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~------~~~-~-~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~ 1054 (1094)
...+.|++++.+.++ .|| .|.-++-.+...- ..+ . .-..+..+.+.|+ .|++.. |+.++-+...++.
T Consensus 90 F~a~~fD~~G~LYav--~dG-~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~ 165 (236)
T 1tl2_A 90 FQFLFFDPNGYLYAV--SKD-KLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYKALPPVSN 165 (236)
T ss_dssp CSEEEECTTSCEEEE--ETT-EEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEEEECCCSST
T ss_pred ceEEEECCCCCEEEe--CCC-EEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEEecCCCCCC
Confidence 468889999998888 455 7877775331110 111 1 1256899999999 677777 8886554443221
Q ss_pred ------EEEEecccCCcceEEEEEcCCCCEEEEEeCCCcE
Q 001349 1055 ------RIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRI 1088 (1094)
Q Consensus 1055 ------~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I 1088 (1094)
....+-...-..-.-+.|.++|.+.++. +|.+
T Consensus 166 ~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 166 QDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp TCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred CcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence 1112211222245557799998776665 7744
No 472
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=85.02 E-value=9.3 Score=43.28 Aligned_cols=91 Identities=10% Similarity=0.151 Sum_probs=62.7
Q ss_pred CCEEEEEECCCCeEEEEecCC-----CCEEEEEEeCC--EEEEEEcCCeEEEEECCCCc------------EEEEeccc-
Q 001349 1003 GAAVKMWSTSNYNMVGSLPTL-----SEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQI------------RIETLQTG- 1062 (1094)
Q Consensus 1003 g~~I~iwd~~~~~~~~~~~~~-----~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~------------~~~~l~~~- 1062 (1094)
|+.||.-++......+.+... ..+..+..+|+ +++.. .+..|.|-.+..+. ..+.+.-+
T Consensus 40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~-g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~ 118 (452)
T 3pbp_A 40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLF-NDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE 118 (452)
T ss_dssp TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEE-CSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG
T ss_pred CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEe-cCCeEEEEEecCccccCcccccccccceeEEEcCC
Confidence 458898888754444444422 25788999998 45544 56688888876321 22334322
Q ss_pred ----CCcceEEEEEcCCC---CEEEEEeCCCcEEEEeCC
Q 001349 1063 ----TSGKVQCMALDDNE---EFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1063 ----h~~~I~~l~~Spdg---~~L~sgs~DG~I~iWdls 1094 (1094)
...+|..+.|+|-+ ..|++-..|++|++||++
T Consensus 119 ~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~ 157 (452)
T 3pbp_A 119 EEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDIL 157 (452)
T ss_dssp CC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETT
T ss_pred cccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcc
Confidence 24679999999954 689999999999999984
No 473
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=84.41 E-value=40 Score=34.66 Aligned_cols=160 Identities=13% Similarity=-0.017 Sum_probs=81.9
Q ss_pred EEEEEECCCeEEEEecCCCc---c-eeEEEeccc--CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc-------eEE
Q 001349 825 KIFSGHSDGTIKVWTGRGSI---L-HLIQQIREH--TKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE-------IHC 891 (1094)
Q Consensus 825 ~LaSgs~Dg~I~vWd~~t~~---~-~~~~~l~~H--~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~-------~~~ 891 (1094)
+|+....| +|++=....+. + ....++ ++ =..+..++|+|+|.+.+. .+|.+.-.+..++. -..
T Consensus 6 ~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~i-G~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~ 81 (236)
T 1tl2_A 6 MLRGVYQD-KFYQGTYPQNKNDNWLARATLI-GKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKK 81 (236)
T ss_dssp CEEEEETT-EEEEESCCCSTTCCHHHHSEEE-ESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEE
T ss_pred EEEEEeCC-cEEecCCCCCcccchhhhcccc-CccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccE
Confidence 45666666 66555444432 1 011222 22 236779999999986665 66765555543321 011
Q ss_pred EEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCC-------------------CCceEEEEeC-CEEEEE
Q 001349 892 VQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS-------------------KYPKCLALVQ-GKVYCG 951 (1094)
Q Consensus 892 ~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~-------------------~~v~~l~~s~-~~l~sg 951 (1094)
+-...... .. .+.|.|+|...++ .+|.+.-++.. +.+..+.+.+ +.|+..
T Consensus 82 IG~~Gw~~-F~-------a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav 151 (236)
T 1tl2_A 82 IGNGGWNQ-FQ-------FLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAV 151 (236)
T ss_dssp EECSCGGG-CS-------EEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEE
T ss_pred eccccccc-ce-------EEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEE
Confidence 11101001 22 3448999998888 56888766652 2456677765 667777
Q ss_pred EcCCeEEEEECCCCceeEEeccceeec-CCCCCeEEEEEeCCccEEEEE
Q 001349 952 CQDGAIQEIDLATGTFATIQTGHRKLL-GKANPVHALQVHNGLVYTAST 999 (1094)
Q Consensus 952 s~Dg~I~iwDl~~~~~~~~~~~~~~~~-~h~~~V~sl~fs~~~~~las~ 999 (1094)
. |+.+.-+...++...........+. +......-+.|.+++.+.+..
T Consensus 152 ~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~ 199 (236)
T 1tl2_A 152 H-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ 199 (236)
T ss_dssp E-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE
T ss_pred e-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe
Confidence 7 8875443333222110000001111 222234446677887766655
No 474
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=83.17 E-value=71 Score=36.59 Aligned_cols=61 Identities=15% Similarity=0.170 Sum_probs=39.6
Q ss_pred CcEEEEEEeCC-EEEEEECCC-eEEEEecCCCcceeEEEecc------cCCCeEEEEEecC---CCEEEEEe
Q 001349 814 GKVLSIACFRD-KIFSGHSDG-TIKVWTGRGSILHLIQQIRE------HTKAVTGLAILQS---GEMLYSGS 874 (1094)
Q Consensus 814 ~~V~~l~fspd-~LaSgs~Dg-~I~vWd~~t~~~~~~~~l~~------H~~~V~sv~fspd---g~~LaSgs 874 (1094)
...+.++|.|+ .|+.+...| .|++++..++....+..+.. ..+....|+|+|| +..|+.+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~ 98 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG 98 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence 45679999997 555556665 79988876664344444432 2456789999995 55554443
No 475
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=81.61 E-value=72 Score=38.15 Aligned_cols=73 Identities=10% Similarity=0.186 Sum_probs=46.4
Q ss_pred cCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCCChHHH-HHh-hhhHHHH
Q 001349 324 NSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPSTRTL-IEM-DMMESLM 397 (1094)
Q Consensus 324 ~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~~~~~-~~~-~~~~~Ll 397 (1094)
.+.++-|.++|+..|..+...++..... -++.|..+|... ...|..+|+.+...+.+. ... ..+|.|+
T Consensus 152 ~~~~~~VRk~A~~al~~l~~~~p~~v~~------~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~ 225 (618)
T 1w63_A 152 KTSNSYLRKKAALCAVHVIRKVPELMEM------FLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLV 225 (618)
T ss_dssp HSCCHHHHHHHHHHHHHHHHHCGGGGGG------GGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHChHHHHH------HHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 3678999999999999886655544332 234444555432 345566888887765442 222 2348888
Q ss_pred HHHHh
Q 001349 398 TVIKK 402 (1094)
Q Consensus 398 ~~l~~ 402 (1094)
.+|..
T Consensus 226 ~~L~~ 230 (618)
T 1w63_A 226 RILKN 230 (618)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88875
No 476
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=79.53 E-value=83 Score=35.02 Aligned_cols=153 Identities=18% Similarity=0.150 Sum_probs=84.7
Q ss_pred CceEEEEeCCEEEEEEcCCeEEEEECCCC-c-----eeEEeccceeec-CCCCCeEEEEEeCCccEEEEEECCCCEEEEE
Q 001349 937 YPKCLALVQGKVYCGCQDGAIQEIDLATG-T-----FATIQTGHRKLL-GKANPVHALQVHNGLVYTASTSLDGAAVKMW 1009 (1094)
Q Consensus 937 ~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~-~-----~~~~~~~~~~~~-~h~~~V~sl~fs~~~~~las~s~Dg~~I~iw 1009 (1094)
.|..++....+.++-..||.|..|-.... + ......+ ..+. .....|..++......+.+....|| .|..|
T Consensus 160 ~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p-~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G-~v~~w 237 (389)
T 3kci_A 160 EVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKP-KLVEALQGHRVVDIACGSGDAQTLCLTDDD-TVWSW 237 (389)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEE-EECGGGTTSCEEEEEECCSSCEEEEEETTT-EEEEE
T ss_pred eEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccc-eEecccCCCeEEEEEEcCCCcEEEEEccCC-EEEEE
Confidence 45555555667777788999999975321 1 0000000 1111 1223566666654334444555665 89988
Q ss_pred ECCCC-----------eEEEEec--CCCCEEEEEEeCCEEEEEEcCCeEEEEECCCC-----------cEEEEecccCCc
Q 001349 1010 STSNY-----------NMVGSLP--TLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQ-----------IRIETLQTGTSG 1065 (1094)
Q Consensus 1010 d~~~~-----------~~~~~~~--~~~~v~~l~~spd~l~sgs~dg~I~vwd~~t~-----------~~~~~l~~~h~~ 1065 (1094)
-.... .....+. ....|..++...++.++-..+|.|+.|-.... .....+......
T Consensus 238 G~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~ 317 (389)
T 3kci_A 238 GDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGK 317 (389)
T ss_dssp ECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTC
T ss_pred eCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCC
Confidence 65321 1112222 23458888888887777789999999975421 111222111223
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1066 KVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1066 ~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
.|..++.. ....+.-..||.|+.|--
T Consensus 318 ~v~~ia~G--~~h~~al~~~G~v~~wG~ 343 (389)
T 3kci_A 318 KVIAIATG--SLHCVCCTEDGEVYTWGD 343 (389)
T ss_dssp CEEEEEEC--SSEEEEEETTCCEEEEEC
T ss_pred CEEEEEec--cCeEEEECCCCCEEEeeC
Confidence 46666654 334555678999999953
No 477
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=79.39 E-value=40 Score=41.05 Aligned_cols=109 Identities=8% Similarity=0.026 Sum_probs=61.2
Q ss_pred ccCcEEEEeeCC----CCeEEEeCCcce--eec--------ccCCCcEEEEEEe-CC-EEEEEECC------CeEEEEec
Q 001349 783 FEMVKVLSNGHD----SSADFWNHRELV--HVD--------SSENGKVLSIACF-RD-KIFSGHSD------GTIKVWTG 840 (1094)
Q Consensus 783 ~d~~~l~s~s~d----g~I~vWd~~~~~--~~~--------~~h~~~V~~l~fs-pd-~LaSgs~D------g~I~vWd~ 840 (1094)
.++..++.||.+ ..+.+||..+.. ... ......-.++.+. .+ .++.|+.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456677777754 456677765221 111 1111223344442 44 66666643 35888999
Q ss_pred CCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCC--cEEEEECCCCceEEE
Q 001349 841 RGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDK--TARVWSIGNEEIHCV 892 (1094)
Q Consensus 841 ~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~Dg--tI~vWdi~~~~~~~~ 892 (1094)
.++.+..+..+...... .+++...++.+++.||.++ .+.+||..++....+
T Consensus 476 ~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~ 528 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDV 528 (695)
T ss_dssp TTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEEC
T ss_pred CCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEc
Confidence 98866555433321111 2233324788888888755 689999998764443
No 478
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=78.87 E-value=9.2 Score=35.39 Aligned_cols=55 Identities=25% Similarity=0.176 Sum_probs=35.3
Q ss_pred HHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHHHH
Q 001349 447 FESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLS 512 (1094)
Q Consensus 447 ~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 512 (1094)
++.|+..++..+...|..|+..|...- +...+++|+.+|...+...|..|+..|.
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~aL~~~~-----------~~~a~~~L~~~L~d~~~~VR~~A~~aL~ 98 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWIIGNFQ-----------DERAVEPLIKLLEDDSGFVRSGAARSLE 98 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGGGC-----------SHHHHHHHHHHHHHCCTHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 688889998888888888877665331 1223556666666555555555555543
No 479
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=75.01 E-value=62 Score=34.10 Aligned_cols=101 Identities=11% Similarity=0.120 Sum_probs=70.3
Q ss_pred hhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccch-hHHHHHHhhhcccHHHHHHHHHHHH
Q 001349 392 MMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSK-VFESVISSLEAEWAEERIAAVGILL 470 (1094)
Q Consensus 392 ~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~l~ 470 (1094)
.+|.|++.+-..++. -++++..++.+|. .+..+. ..+.+++.+++.+.+.|+.+...|.
T Consensus 133 ~lP~LveKlGd~k~~-------vR~~~r~il~~l~-------------~v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~ 192 (266)
T 2of3_A 133 FVPYLLLKTGEAKDN-------MRTSVRDIVNVLS-------------DVVGPLKMTPMLLDALKSKNARQRSECLLVIE 192 (266)
T ss_dssp HHHHHHHGGGCSSHH-------HHHHHHHHHHHHH-------------HHHCHHHHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHH-------HHHHHHHHHHHHH-------------HHCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 448888776433321 1455555555441 122333 4588999999999999999999999
Q ss_pred HHhhccCcchhhHhhhcCc---hhHHHHHHhcCCchhHHHHHHHHHHHhc
Q 001349 471 RCMQEDGKCRNSIADKAEL---APVMESFMAASDGERFEIVCFLSELVKL 517 (1094)
Q Consensus 471 ~~~~~~~~~r~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~l~el~~~ 517 (1094)
++++..|.- ....+ +.+..++-.-+...|..|++.+.|+|..
T Consensus 193 ~li~~~G~~-----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 193 YYITNAGIS-----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp HHHHHHCSG-----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCC-----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 999988764 22345 5566666666778899999999999987
No 480
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=73.40 E-value=60 Score=42.41 Aligned_cols=281 Identities=16% Similarity=0.145 Sum_probs=0.0
Q ss_pred hhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccc----------cchhhhhccCCCcHHHHHHHHhcC----hHHH
Q 001349 308 MLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRD----------KSVIHTLTRVESDVERIVALFKKG----LLEA 373 (1094)
Q Consensus 308 ~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~----------~~~~~~i~~~~~~~~~L~~lLk~g----~~~A 373 (1094)
+...+.-+..+++- ..|.|..+...|..-|.+....+ + -++.|+..|... +..|
T Consensus 1 ~~~~~~~l~~lL~~-l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~-----------il~~Ll~~L~d~~~~vR~~A 68 (1230)
T 1u6g_C 1 MASASYHISNLLEK-MTSSDKDFRFMATNDLMTELQKDSIKLDDDSERK-----------VVKMILKLLEDKNGEVQNLA 68 (1230)
T ss_dssp ---CCHHHHHHHHH-TTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHH-----------HHHHHHHHTTCSSHHHHHHH
T ss_pred CCchHhHHHHHHHh-cCCCCHhHHHHHHHHHHHHHcccccCCChhHHHH-----------HHHHHHHHhcCCCHHHHHHH
Q ss_pred HHHHHhcCCChHHHHHhhhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHh
Q 001349 374 VVLIDLLRPSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISS 453 (1094)
Q Consensus 374 a~~l~~L~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 453 (1094)
+..|..|...-.+-..-..++.|+..|......- +.+|...|.++...............-.-...+|.|++.
T Consensus 69 ~~~L~~l~~~~~~~~~~~i~~~Ll~~l~d~~~~v-------R~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~ 141 (1230)
T 1u6g_C 69 VKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQL-------RDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSA 141 (1230)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHTTCSSSHH-------HHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCcHHH-------HHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHH
Q ss_pred hh-cccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHHHHhccccchhHHHHHHhhh
Q 001349 454 LE-AEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKD 532 (1094)
Q Consensus 454 l~-~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~ 532 (1094)
+. .++.+.|..|..+|..++...+..=.-.. ..-++.++..+.......|..|+..|..+... -.
T Consensus 142 l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~-~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~-------------~~ 207 (1230)
T 1u6g_C 142 IAKQEDVSVQLEALDIMADMLSRQGGLLVNFH-PSILTCLLPQLTSPRLAVRKRTIIALGHLVMS-------------CG 207 (1230)
T ss_dssp HSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTH-HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTT-------------C-
T ss_pred HcCCCchHHHHHHHHHHHHHHHHhHhHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHh-------------cC
Q ss_pred cCcchh-HHHHHHHHhhcC-CccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhcccc
Q 001349 533 EGTYSS-MHTLLVYLQTAN-HDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQGR 610 (1094)
Q Consensus 533 ~~~~~~-~~~~~~~l~~~~-~~~~~~~a~~l~~l~~~~~~~~~~~~reea~~~~~~~l~~~~~~~~~~~~~~~~~~l~g~ 610 (1094)
+..+.. |..++.+|+... +..+.-++..|..+-... |....-|-++-++.++..+. .+.+.++..+..++..+...
T Consensus 208 ~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~-~~~~~~~l~~l~~~ll~~l~-d~~~~vR~~a~~~l~~l~~~ 285 (1230)
T 1u6g_C 208 NIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQA-GHRIGEYLEKIIPLVVKFCN-VDDDELREYCIQAFESFVRR 285 (1230)
T ss_dssp ---CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHS-SGGGTTSCTTHHHHHHHHHS-SCCTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHH
Q ss_pred cccCChhhHHHHH
Q 001349 611 FTTSGKSLTRAML 623 (1094)
Q Consensus 611 ~s~~g~~~~~~~l 623 (1094)
+...=.|+....+
T Consensus 286 ~~~~~~~~l~~li 298 (1230)
T 1u6g_C 286 CPKEVYPHVSTII 298 (1230)
T ss_dssp TTCCCHHHHHHHH
T ss_pred ChHHHHHhHHHHH
No 481
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=73.12 E-value=64 Score=39.91 Aligned_cols=270 Identities=15% Similarity=0.096 Sum_probs=132.9
Q ss_pred ccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCCChHH------------
Q 001349 323 FNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPSTRT------------ 386 (1094)
Q Consensus 323 ~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~~~~------------ 386 (1094)
..+.+.++.+.++.+|..+............. ..-++.++..++.. ...|...+..+......
T Consensus 233 ~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~-~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~ 311 (861)
T 2bpt_A 233 TQAEDIEVQAAAFGCLCKIMSKYYTFMKPYME-QALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSP 311 (861)
T ss_dssp HTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHH-HTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCS
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCc
Confidence 35678888999999998886543221111000 01123333344333 34455555444221100
Q ss_pred -------HHH-hhhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhccc
Q 001349 387 -------LIE-MDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEW 458 (1094)
Q Consensus 387 -------~~~-~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 458 (1094)
... -..+|.|+..+....++...---.++.++...|..|...++ .. +-...++.+.+.+.+.+
T Consensus 312 ~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~--------~~-~~~~l~~~l~~~l~~~~ 382 (861)
T 2bpt_A 312 LQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG--------NH-ILEPVLEFVEQNITADN 382 (861)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG--------GG-GHHHHHHHHHHHTTCSS
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc--------Hh-HHHHHHHHHHHHcCCCC
Confidence 111 22347788777654321100001234556666665533221 01 12245577888888888
Q ss_pred HHHHHHHHHHHHHHhhccCcchhhHhhh--cCchhHHHHHHhcCCchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcc
Q 001349 459 AEERIAAVGILLRCMQEDGKCRNSIADK--AELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTY 536 (1094)
Q Consensus 459 ~~~~~~~~~~l~~~~~~~~~~r~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~ 536 (1094)
.+.|..|+.+|..+....+ ...+... .-++.++..+.......|..++..|..+...-.... ....---
T Consensus 383 ~~~r~~a~~~l~~i~~~~~--~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-------~~~~~~~ 453 (861)
T 2bpt_A 383 WRNREAAVMAFGSIMDGPD--KVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESI-------DPQQHLP 453 (861)
T ss_dssp HHHHHHHHHHHHHTSSSSC--HHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGS-------CTTTTHH
T ss_pred hhHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhc-------CCHHHHH
Confidence 8888888777666543211 1222211 112334444444444455555555544432200000 0000111
Q ss_pred hhHHHHHHHHhhcCCccchhHHHHHHhhhc-ccC--CCCCCccHHHHHHHHHHHhhcCCC-hHHHHHHHHHHHhcccccc
Q 001349 537 SSMHTLLVYLQTANHDQCPVVAGLLLQLDL-LAE--PRKMSIYREEAIDTLISCLRNSDY-PAAQLAAAKTIVSLQGRFT 612 (1094)
Q Consensus 537 ~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~-~~~--~~~~~~~reea~~~~~~~l~~~~~-~~~~~~~~~~~~~l~g~~s 612 (1094)
..+..++.+++.. ++-+--++..|.++-- +.+ +....-|-++-++.|+..+.+.+. .+++..+.+++..+.....
T Consensus 454 ~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~ 532 (861)
T 2bpt_A 454 GVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYAT 532 (861)
T ss_dssp HHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcc
Confidence 2344555566442 3333334444544432 221 344556778889999999987664 5789899999988876543
No 482
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=72.78 E-value=87 Score=31.93 Aligned_cols=178 Identities=11% Similarity=0.092 Sum_probs=105.3
Q ss_pred cccchHhHHHHHHHHHHHHHhccchHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCc
Q 001349 279 SEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESD 358 (1094)
Q Consensus 279 s~~l~~~e~a~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~ 358 (1094)
+..-.++..|+..+..+......- . ......+++.+...|..+.+..|...|..+|..|... ++
T Consensus 26 s~~w~~R~~a~~~L~~l~~~~~~~---~-~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~-------l~----- 89 (242)
T 2qk2_A 26 EKKWTLRKESLEVLEKLLTDHPKL---E-NGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKG-------LA----- 89 (242)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCSSB---C-CCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH-------HG-----
T ss_pred cCCHHHHHHHHHHHHHHHccCCCC---C-CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH-------Hh-----
Confidence 444566778888888877652210 0 0112234554555554356788888888888877311 10
Q ss_pred HHHHHHHHhcChHHHHHHHHhcCCChHHHHHhhhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccch
Q 001349 359 VERIVALFKKGLLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIA 438 (1094)
Q Consensus 359 ~~~L~~lLk~g~~~Aa~~l~~L~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~ 438 (1094)
+.- ..-.-..+|+|+..+...+.. -+.+|...|..++....
T Consensus 90 -----------------------~~~-~~~~~~ilp~ll~~l~d~~~~-------vr~~a~~aL~~~~~~~~-------- 130 (242)
T 2qk2_A 90 -----------------------KRF-SNYASACVPSLLEKFKEKKPN-------VVTALREAIDAIYASTS-------- 130 (242)
T ss_dssp -----------------------GGG-HHHHHHHHHHHHHGGGCCCHH-------HHHHHHHHHHHHHTTSC--------
T ss_pred -----------------------hhH-HHHHHHHHHHHHHHHcCCCHH-------HHHHHHHHHHHHHHcCC--------
Confidence 000 001112337777776654311 14667777776654321
Q ss_pred hhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCc---chhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHHHH
Q 001349 439 NTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGK---CRNSIADKAELAPVMESFMAASDGERFEIVCFLSELV 515 (1094)
Q Consensus 439 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~---~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el~ 515 (1094)
+ ...++.|...+++++...|..+..+|..++..-+. ...++. .-++.++.++.....+.|..|+..|..+.
T Consensus 131 --~--~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~--~l~p~l~~~l~D~~~~VR~~A~~~l~~l~ 204 (242)
T 2qk2_A 131 --L--EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLK--LLTTSLVKTLNEPDPTVRDSSAEALGTLI 204 (242)
T ss_dssp --H--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHH--HHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred --H--HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHH--HHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 0 13458889999999999999999999988776432 223332 23456666676666677888888888876
Q ss_pred hc
Q 001349 516 KL 517 (1094)
Q Consensus 516 ~~ 517 (1094)
..
T Consensus 205 ~~ 206 (242)
T 2qk2_A 205 KL 206 (242)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 483
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=72.72 E-value=49 Score=36.46 Aligned_cols=102 Identities=11% Similarity=0.094 Sum_probs=63.5
Q ss_pred CCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeE--EEEec-----CCCCEEEEEEeCC-----EEEEE---EcCCeEE
Q 001349 982 NPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNM--VGSLP-----TLSEVRAMVVSSE-----LVYLG---CKGGTVE 1046 (1094)
Q Consensus 982 ~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~--~~~~~-----~~~~v~~l~~spd-----~l~sg---s~dg~I~ 1046 (1094)
.....++|.|++.++++-...| .|++++..++.. +..+. .......|+++|+ .+++. ..++.|.
T Consensus 32 ~~P~~ia~~pdG~llVter~~G-~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEA-TITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTC-EEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCceEEEEcCCCcEEEEEecCC-EEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 4567999999998877764355 899988765543 22221 3466889999985 45543 2455666
Q ss_pred EEECCCC----------cEE-EEecccCCcceEEEEEcCCCCEEEEEeC
Q 001349 1047 IWDQKRQ----------IRI-ETLQTGTSGKVQCMALDDNEEFLVIGTS 1084 (1094)
Q Consensus 1047 vwd~~t~----------~~~-~~l~~~h~~~I~~l~~Spdg~~L~sgs~ 1084 (1094)
-|....+ +.+ ..+..+....-..|+|.|||.+.++.++
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd 159 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGE 159 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBC
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECC
Confidence 6665431 122 2232221123567999999987777653
No 484
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=72.69 E-value=64 Score=33.53 Aligned_cols=181 Identities=11% Similarity=0.078 Sum_probs=100.5
Q ss_pred hHhhhccCCchHHHHHHHHHHHh-hcccccchhhhhccCCCc----HHHHHHHHh-cC----hHHHHHHHHhcC-----C
Q 001349 318 FVEILFNSVDPRVLEATIFLLSE-LGSRDKSVIHTLTRVESD----VERIVALFK-KG----LLEAVVLIDLLR-----P 382 (1094)
Q Consensus 318 ~v~~L~~s~~~~v~~~av~~L~~-l~s~~~~~~~~i~~~~~~----~~~L~~lLk-~g----~~~Aa~~l~~L~-----~ 382 (1094)
|-+.| .|.+-...++|+..|.. +....+ +|....++ +..|...+. -. +..|..+|-.|. +
T Consensus 21 f~~~l-~s~~w~eRk~al~~L~~~~~~~~~----~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~ 95 (249)
T 2qk1_A 21 FQERI-TSSKWKDRVEALEEFWDSVLSQTK----KLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTP 95 (249)
T ss_dssp HHHHH-TCSSHHHHHHHHHHHHHHTGGGCC----CBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHh-hcCCHHHHHHHHHHHHHHHHhcCC----ccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccc
Confidence 44444 45677777888888888 743222 12211222 344445552 22 334444555543 2
Q ss_pred ChHHHHHhhhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhc--cchhHHHHHHhhhcccHH
Q 001349 383 STRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIV--SSKVFESVISSLEAEWAE 460 (1094)
Q Consensus 383 ~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~ 460 (1094)
...-.-....+|+++..+.+.+. ..++++...|..++... ++ .... =.-.++.|+..+++++..
T Consensus 96 ~f~~~y~~~llp~ll~~l~dkk~-------~V~~aa~~al~~i~~~~----~~---~~~~~~l~~ll~~l~~~l~~k~~~ 161 (249)
T 2qk1_A 96 GFSKDYVSLVFTPLLDRTKEKKP-------SVIEAIRKALLTICKYY----DP---LASSGRNEDMLKDILEHMKHKTPQ 161 (249)
T ss_dssp TSCHHHHHHHHHHHHHGGGCCCH-------HHHHHHHHHHHHHHHHS----CT---TCTTCTTHHHHHHHHHHTTCSSHH
T ss_pred cccHHHHHHHHHHHHHHHcCCCH-------HHHHHHHHHHHHHHHHc----cc---cccCCcHHHHHHHHHHHHcCCChH
Confidence 21102222345888888765431 12456666666553221 11 1111 113458889999999999
Q ss_pred HHHHHHHHHHHHhhccCcchhhHhh---hcCchhHHHHHHhcCCchhHHHHHHHHHHHhc
Q 001349 461 ERIAAVGILLRCMQEDGKCRNSIAD---KAELAPVMESFMAASDGERFEIVCFLSELVKL 517 (1094)
Q Consensus 461 ~~~~~~~~l~~~~~~~~~~r~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~l~el~~~ 517 (1094)
.|..+..+|..|+...+..-..+.. ..=++.+..++.......|..|++.|-.+...
T Consensus 162 vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 162 IRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKI 221 (249)
T ss_dssp HHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999998876653122111 12234555566555666788888888887653
No 485
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=72.06 E-value=1.4e+02 Score=36.66 Aligned_cols=275 Identities=11% Similarity=0.114 Sum_probs=132.0
Q ss_pred CCchHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcC---hHHHHHHHHhcCCC-----hHHH-HHh-hhhH
Q 001349 325 SVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG---LLEAVVLIDLLRPS-----TRTL-IEM-DMME 394 (1094)
Q Consensus 325 s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g---~~~Aa~~l~~L~~~-----~~~~-~~~-~~~~ 394 (1094)
+.++.|.+.+..+|..+...-......-.-.+.-++.|+..|+.. ...|+.+|..+... ...+ ..+ ..++
T Consensus 422 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~ 501 (861)
T 2bpt_A 422 DQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVD 501 (861)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHH
Confidence 457788888888887764321100000000112346666666554 23445555544211 0111 111 1236
Q ss_pred HHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcc---------------cH
Q 001349 395 SLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAE---------------WA 459 (1094)
Q Consensus 395 ~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---------------~~ 459 (1094)
.|+..+...+.+. .-+.+++..+..++...+... .. .-...++.+++.+..- ..
T Consensus 502 ~L~~~l~~~d~~~-----~vr~~a~~al~~l~~~~~~~~-----~~-~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~ 570 (861)
T 2bpt_A 502 GLIGAANRIDNEF-----NARASAFSALTTMVEYATDTV-----AE-TSASISTFVMDKLGQTMSVDENQLTLEDAQSLQ 570 (861)
T ss_dssp HHHHHHTCSCCGG-----GHHHHHHHHHHHHHHHCCGGG-----HH-HHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHH
T ss_pred HHHHHHhCcCcch-----HHHHHHHHHHHHHHHHcchhh-----HH-HHHHHHHHHHHHHHHHHhhhcccCChhhHHHHH
Confidence 6666665422111 124566667777765443211 00 1113446666666521 12
Q ss_pred HHHHHHHHHHHHHhhccCc-chhhHhhhcCchhHHHHHHhcCC-chhHHHHHHHHHHHhccccchhHHHHHHhhhcCcch
Q 001349 460 EERIAAVGILLRCMQEDGK-CRNSIADKAELAPVMESFMAASD-GERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYS 537 (1094)
Q Consensus 460 ~~~~~~~~~l~~~~~~~~~-~r~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~ 537 (1094)
+-|..+...|..+++.-+. +..++.+ -++.++.++..... ..|..++.++..+...-... ....+. .
T Consensus 571 ~~~~~~~~~l~~l~~~~~~~~~~~~~~--l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~-~~~~l~--------~ 639 (861)
T 2bpt_A 571 ELQSNILTVLAAVIRKSPSSVEPVADM--LMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKG-FEKYLE--------T 639 (861)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTGGGHHH--HHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGG-GHHHHH--------H
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHH--HHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhh-HHHHHH--------H
Confidence 2344555556555554432 2222221 22344555555544 56777777776665432211 111111 1
Q ss_pred hHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCC-ChHHHHHHHHHHHhcccccccCCh
Q 001349 538 SMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSD-YPAAQLAAAKTIVSLQGRFTTSGK 616 (1094)
Q Consensus 538 ~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~~~~~reea~~~~~~~l~~~~-~~~~~~~~~~~~~~l~g~~s~~g~ 616 (1094)
.+..++.++....++-+-.+..++..+-.-.. ....-|-.+-+..++..|.+.+ ...++..+..++..+...+...=.
T Consensus 640 i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~ 718 (861)
T 2bpt_A 640 FSPYLLKALNQVDSPVSITAVGFIADISNSLE-EDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFI 718 (861)
T ss_dssp HHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTG-GGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGH
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHhc-hhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHH
Confidence 34455556644334434445555544433221 2344566777888888888764 356788888888877665533333
Q ss_pred hhHHHH
Q 001349 617 SLTRAM 622 (1094)
Q Consensus 617 ~~~~~~ 622 (1094)
+|....
T Consensus 719 ~~l~~~ 724 (861)
T 2bpt_A 719 PYLNDI 724 (861)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444333
No 486
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=71.11 E-value=1.5 Score=37.73 Aligned_cols=50 Identities=12% Similarity=0.146 Sum_probs=39.1
Q ss_pred ceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCC
Q 001349 163 DFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLP 214 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~ 214 (1094)
-+-|-.|-.-.+ -.+...-|-+|..|+...+.. ...||+|+++++.+--+
T Consensus 28 ~~nCKsCWf~~k-~LV~C~dHYLCl~CLtlmL~~-SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 28 PQFCKSCWFENK-GLVECNNHYLCLNCLTLLLSV-SNRCPICKMPLPTKLRP 77 (99)
T ss_dssp CCCCCSSCSCCS-SEEECSSCEEEHHHHHHTCSS-SSEETTTTEECCCCSCT
T ss_pred cccChhhccccC-CeeeecchhhHHHHHHHHHhh-ccCCcccCCcCCcceec
Confidence 578999987666 455566799999999988877 44699999999865443
No 487
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=69.55 E-value=4.4 Score=33.59 Aligned_cols=34 Identities=15% Similarity=0.268 Sum_probs=29.0
Q ss_pred ceeccCccccccCcEEcCC----cccccHHhHHHHHHh
Q 001349 163 DFVCPITTHIFDDPVTLET----GQTYERRAIQEWIER 196 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~~~c----Ghtfc~~ci~~~~~~ 196 (1094)
.+.|.+|.+-+.|---+.| +|.||-.|-+..++.
T Consensus 15 ~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 15 PLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred eeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 6899999999999755544 899999999998874
No 488
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=67.51 E-value=1.5 Score=30.52 Aligned_cols=15 Identities=20% Similarity=0.558 Sum_probs=12.3
Q ss_pred ceeccCccccccCcE
Q 001349 163 DFVCPITTHIFDDPV 177 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv 177 (1094)
-|+||||+.-+..|-
T Consensus 5 GFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 5 GFICPQCMKSLGSAD 19 (34)
T ss_dssp EEECTTTCCEESSHH
T ss_pred ccCCcHHHHHcCCHH
Confidence 599999998887763
No 489
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=65.95 E-value=1.8e+02 Score=36.42 Aligned_cols=179 Identities=13% Similarity=0.083 Sum_probs=92.9
Q ss_pred hhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcC-----hHHHHHHHHhcCCChH
Q 001349 311 KPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG-----LLEAVVLIDLLRPSTR 385 (1094)
Q Consensus 311 ~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g-----~~~Aa~~l~~L~~~~~ 385 (1094)
...++..++..+....++.+.+.++..|..+...++ -+++.++.+|+.. +.-|+.++-.-..-.-
T Consensus 505 n~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~----------e~~~~li~~L~~~~dp~vRygaa~alglAyaGTG 574 (963)
T 4ady_A 505 KPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ----------ELADDLITKMLASDESLLRYGGAFTIALAYAGTG 574 (963)
T ss_dssp CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG----------GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSC
T ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCC
Confidence 344666677776666667777777777776543333 2345666666542 2222222222222222
Q ss_pred HHHHhhhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhh-hcccHHHHHH
Q 001349 386 TLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSL-EAEWAEERIA 464 (1094)
Q Consensus 386 ~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~~~~ 464 (1094)
|..+| ..||+.+.+..++.. +.+|+..|.-+..+- +..++.+++.+ +.++..-|..
T Consensus 575 n~~aI---q~LL~~~~~d~~d~V------RraAViaLGlI~~g~--------------~e~v~rlv~~L~~~~d~~VR~g 631 (963)
T 4ady_A 575 NNSAV---KRLLHVAVSDSNDDV------RRAAVIALGFVLLRD--------------YTTVPRIVQLLSKSHNAHVRCG 631 (963)
T ss_dssp CHHHH---HHHHHHHHHCSCHHH------HHHHHHHHHHHTSSS--------------CSSHHHHTTTGGGCSCHHHHHH
T ss_pred CHHHH---HHHHHHhccCCcHHH------HHHHHHHHHhhccCC--------------HHHHHHHHHHHHhcCCHHHHHH
Confidence 33222 456676666544432 345555565443222 23456666644 4688888888
Q ss_pred HHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHHHHhccccc---hhHHHHHH
Q 001349 465 AVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRT---FNEQILHI 529 (1094)
Q Consensus 465 ~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el~~~~r~~---~~~~~l~~ 529 (1094)
|+-.|-....-++. ...+..|..+++......|..|+..|-.+..+...+ .+.+++++
T Consensus 632 AalALGli~aGn~~-------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~ 692 (963)
T 4ady_A 632 TAFALGIACAGKGL-------QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKN 692 (963)
T ss_dssp HHHHHHHHTSSSCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHH
T ss_pred HHHHHHHhccCCCc-------HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHH
Confidence 77766543322221 111223444455556666777777777776654433 35555553
No 490
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=65.39 E-value=1.9e+02 Score=32.93 Aligned_cols=36 Identities=3% Similarity=-0.085 Sum_probs=26.0
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceE
Q 001349 855 TKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIH 890 (1094)
Q Consensus 855 ~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~ 890 (1094)
-...+.|+|.|+|+++++-...+.|++++..++...
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~ 61 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVK 61 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEe
Confidence 446789999999997776544457888887655533
No 491
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=65.25 E-value=4.9 Score=37.33 Aligned_cols=102 Identities=18% Similarity=0.148 Sum_probs=63.6
Q ss_pred CCchHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCCChHHHHHhhhhHHHHHHH
Q 001349 325 SVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPSTRTLIEMDMMESLMTVI 400 (1094)
Q Consensus 325 s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~~~~~~~~~~~~~Ll~~l 400 (1094)
+.+..+...|+..|.++. +.+++.|+.+|+.. +..|+.+|..+... +.+++|+..|
T Consensus 23 ~~~~~vR~~A~~~L~~~~-------------~~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~~-------~a~~~L~~~L 82 (131)
T 1te4_A 23 DENKWVRRDVSTALSRMG-------------DEAFEPLLESLSNEDWRIRGAAAWIIGNFQDE-------RAVEPLIKLL 82 (131)
T ss_dssp SSCCCSSSSCCSSTTSCS-------------STTHHHHHHGGGCSCHHHHHHHHHHHGGGCSH-------HHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC-------------chHHHHHHHHHcCCCHHHHHHHHHHHHhcCCH-------HHHHHHHHHH
Confidence 445555555555554441 23468888888765 56677777776531 2358888888
Q ss_pred HhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHH
Q 001349 401 KKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGIL 469 (1094)
Q Consensus 401 ~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l 469 (1094)
...+.. -+.+|+..|..+ ....+++.|+..++..+...|..|+..|
T Consensus 83 ~d~~~~-------VR~~A~~aL~~~----------------~~~~a~~~L~~~l~d~~~~vr~~A~~aL 128 (131)
T 1te4_A 83 EDDSGF-------VRSGAARSLEQI----------------GGERVRAAMEKLAETGTGFARKVAVNYL 128 (131)
T ss_dssp HHCCTH-------HHHHHHHHHHHH----------------CSHHHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred cCCCHH-------HHHHHHHHHHHh----------------CcHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 654311 144555556544 2456789999999888888888776654
No 492
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=61.19 E-value=0.56 Score=40.59 Aligned_cols=41 Identities=24% Similarity=0.458 Sum_probs=28.0
Q ss_pred ceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCC
Q 001349 163 DFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLS 209 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~ 209 (1094)
+..||+|...|.. .-|+.+|..|-..+.. ...||.|+++|.
T Consensus 32 ~~~CP~Cq~eL~~----~g~~~hC~~C~~~f~~--~a~CPdC~q~Le 72 (101)
T 2jne_A 32 ELHCPQCQHVLDQ----DNGHARCRSCGEFIEM--KALCPDCHQPLQ 72 (101)
T ss_dssp CCBCSSSCSBEEE----ETTEEEETTTCCEEEE--EEECTTTCSBCE
T ss_pred cccCccCCCccee----cCCEEECccccchhhc--cccCcchhhHHH
Confidence 5899999987652 3455569999443211 224999999875
No 493
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=60.16 E-value=2.9e+02 Score=33.83 Aligned_cols=267 Identities=13% Similarity=0.040 Sum_probs=129.3
Q ss_pred cCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCCChH--------------
Q 001349 324 NSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPSTR-------------- 385 (1094)
Q Consensus 324 ~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~~~-------------- 385 (1094)
.+.+..+.+.++.+|..+............. ..-++.++..++.. ...|...+..+.....
T Consensus 227 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~ 305 (876)
T 1qgr_A 227 QCPDTRVRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGR 305 (876)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHSGGGCHHHHT-TTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCC
Confidence 4567788888999888886543322211110 12234444444433 2334444433321100
Q ss_pred -------HH--HHh-hhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhh
Q 001349 386 -------TL--IEM-DMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLE 455 (1094)
Q Consensus 386 -------~~--~~~-~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 455 (1094)
+. ..+ ..+|.++..+....++.-.---.++.+|...+..|...+. ..+ -...++.+...+.
T Consensus 306 ~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~--------~~~-~~~~l~~l~~~l~ 376 (876)
T 1qgr_A 306 PPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--------DDI-VPHVLPFIKEHIK 376 (876)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG--------GGG-HHHHHHHHHHHTT
T ss_pred CccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc--------Hhh-HHHHHHHHHHHcc
Confidence 01 112 2337777777643221000011445677777776644332 111 2345678888888
Q ss_pred cccHHHHHHHHHHHHHHhhccC-c-chhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHHHHhccccchhHHHHHHhhhc
Q 001349 456 AEWAEERIAAVGILLRCMQEDG-K-CRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDE 533 (1094)
Q Consensus 456 ~~~~~~~~~~~~~l~~~~~~~~-~-~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~ 533 (1094)
..+...|..|..+|.......+ . ...++.+ -++.++.++.......|..|+..|..+...-..... ...
T Consensus 377 ~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~--~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~-------~~~ 447 (876)
T 1qgr_A 377 NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQ--AMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAI-------NDV 447 (876)
T ss_dssp CSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHH--HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTS-------STT
T ss_pred CCChHHHHHHHHHHHHHHcCCCHHHHHHHHHH--HHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcc-------cHH
Confidence 8888889988777765543222 1 1122222 345666666666666777777777776554221000 000
Q ss_pred CcchhHHHHHHHHhhcCCccchhHHHHHHhhhcc-c------------CCCCCCccHHHHHHHHHHHhhcCC--ChHHHH
Q 001349 534 GTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLL-A------------EPRKMSIYREEAIDTLISCLRNSD--YPAAQL 598 (1094)
Q Consensus 534 ~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~-~------------~~~~~~~~reea~~~~~~~l~~~~--~~~~~~ 598 (1094)
---..+..++..++.. +.-+.-++..|..+--- . .+....-|-+.-++.|+..+...+ ..+++.
T Consensus 448 ~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~ 526 (876)
T 1qgr_A 448 YLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRS 526 (876)
T ss_dssp THHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHH
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHH
Confidence 0112233344444331 11122233333333211 1 112344566777777777776653 334555
Q ss_pred HHHHHHHhcccc
Q 001349 599 AAAKTIVSLQGR 610 (1094)
Q Consensus 599 ~~~~~~~~l~g~ 610 (1094)
.+.+++..+...
T Consensus 527 ~~~~~l~~l~~~ 538 (876)
T 1qgr_A 527 SAYESLMEIVKN 538 (876)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 666666665543
No 494
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=59.77 E-value=1.8e+02 Score=30.94 Aligned_cols=61 Identities=13% Similarity=0.147 Sum_probs=33.8
Q ss_pred EeCCEEEEEE--CCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCC--------------CcEEEEEC
Q 001349 821 CFRDKIFSGH--SDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD--------------KTARVWSI 884 (1094)
Q Consensus 821 fspd~LaSgs--~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~D--------------gtI~vWdi 884 (1094)
+..+.|+-.. .++.|...+........+.. . .+--|+++|.+|+-+... +.|+..++
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~---~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~ 95 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSN---D----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKR 95 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTSCSCEEEEE---E----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEET
T ss_pred EeCCEEEEEeCCCCceEEEEcCCCCCCEEccC---C----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeC
Confidence 4555444332 35667667766553223222 1 123557888888766543 35677777
Q ss_pred CCCc
Q 001349 885 GNEE 888 (1094)
Q Consensus 885 ~~~~ 888 (1094)
++++
T Consensus 96 dg~~ 99 (302)
T 3s25_A 96 NGHG 99 (302)
T ss_dssp TSCC
T ss_pred CCCc
Confidence 7664
No 495
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=59.30 E-value=88 Score=39.61 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=28.5
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 001349 857 AVTGLAILQSGEMLYSGSLDKTARVWSIGNEE 888 (1094)
Q Consensus 857 ~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~ 888 (1094)
.+.+++..++..+++|-+.|+++|+|++.+++
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~ 268 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQ 268 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCC
Confidence 46777888888999999999999999999985
No 496
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=59.28 E-value=1.9e+02 Score=30.87 Aligned_cols=105 Identities=10% Similarity=0.048 Sum_probs=53.3
Q ss_pred ccccccCcEEEEeeC--CCCeEEEeCC-cceeecccCCCcEEEEEEeCCEEEEE-EC-------------CCeEEEEecC
Q 001349 779 SPLAFEMVKVLSNGH--DSSADFWNHR-ELVHVDSSENGKVLSIACFRDKIFSG-HS-------------DGTIKVWTGR 841 (1094)
Q Consensus 779 ~~~~~d~~~l~s~s~--dg~I~vWd~~-~~~~~~~~h~~~V~~l~fspd~LaSg-s~-------------Dg~I~vWd~~ 841 (1094)
--+.+++.++..... ++.|...+.+ .....+.. +.+..+....++|+-. .. ++.|+..++.
T Consensus 19 g~~~~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~--~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d 96 (302)
T 3s25_A 19 GLFCESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSN--DTAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN 96 (302)
T ss_dssp TCEEEETTEEEEEEGGGTTEEEEEETTSCSCEEEEE--EEEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred eEEEEeCCEEEEEeCCCCceEEEEcCCCCCCEEccC--CceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence 335667777766543 3444444443 11122211 2234444444544433 33 3467888888
Q ss_pred CCcceeEEEecccCCCeEEEEEecCCCEEEEEe----CCCcEEEEECCCCceEEE
Q 001349 842 GSILHLIQQIREHTKAVTGLAILQSGEMLYSGS----LDKTARVWSIGNEEIHCV 892 (1094)
Q Consensus 842 t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs----~DgtI~vWdi~~~~~~~~ 892 (1094)
++....+.. .. +..|++++++|+-.. .+..|...++++...+.+
T Consensus 97 g~~~~~l~~-----~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~l 144 (302)
T 3s25_A 97 GHGSTVLDP-----DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKI 144 (302)
T ss_dssp SCCCEEEEC-----SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEE
T ss_pred CCcceEeec-----CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEE
Confidence 774333221 11 236788888888665 344566666765443333
No 497
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=59.17 E-value=65 Score=31.90 Aligned_cols=65 Identities=9% Similarity=0.142 Sum_probs=43.2
Q ss_pred hhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHHH
Q 001349 445 KVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSEL 514 (1094)
Q Consensus 445 ~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el 514 (1094)
+.+|+|....+.|+..-|++.+..|-..+.++...-.++.+ -+.-++.+.++-.|..|++|+..+
T Consensus 107 ~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~r-----di~smltskd~~Dkl~aLnFi~al 171 (253)
T 2db0_A 107 SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVR-----DFMSMLSSKNREDKLTALNFIEAM 171 (253)
T ss_dssp HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHH-----HHHHHTSCSSHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHH-----HHHHHhcCCChHHHHHHHHHHHHH
Confidence 45677778888888888888888887777777665555544 233445555666666667766544
No 498
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=59.16 E-value=1.7e+02 Score=30.24 Aligned_cols=172 Identities=9% Similarity=0.061 Sum_probs=98.1
Q ss_pred hccCCchHHHHHHHHHHHhhcccc-cchhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhc-CCChHHHHHhhhh-H
Q 001349 322 LFNSVDPRVLEATIFLLSELGSRD-KSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLL-RPSTRTLIEMDMM-E 394 (1094)
Q Consensus 322 L~~s~~~~v~~~av~~L~~l~s~~-~~~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L-~~~~~~~~~~~~~-~ 394 (1094)
|....|+.++.+++.+|-++..+- +.....+. +--++.++.++|.. ...|...|.-| ...+-.-.....+ .
T Consensus 41 LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~--e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~ 118 (265)
T 3b2a_A 41 LAGEDDETTRLRAFVALGEILKRADSDLRMMVL--ERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLKAAK 118 (265)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHH--HHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHHHHhccccccHHHH--HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 346688999999999999997662 22222222 23568888888776 45666544433 3333222233333 6
Q ss_pred HHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccc-hhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHh
Q 001349 395 SLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSI-ANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCM 473 (1094)
Q Consensus 395 ~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~ 473 (1094)
.|+.++.++.+. -..++.+.| +. .......+.+..+.+.+++.+.+.|.++-++|+..-
T Consensus 119 aL~dlik~~~~i----------l~~eaae~L----------gklkv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia 178 (265)
T 3b2a_A 119 TLVSLLESPDDM----------MRIETIDVL----------SKLQPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNML 178 (265)
T ss_dssp HHHHHTTSCCHH----------HHHHHHHHH----------HHCCBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHG
T ss_pred HHHHHhcCCCch----------HHHHHHHHh----------CcCCcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhh
Confidence 777776654321 112222222 01 222235677789999999999999999999888665
Q ss_pred hccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHHHHhcc
Q 001349 474 QEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLN 518 (1094)
Q Consensus 474 ~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el~~~~ 518 (1094)
...+.-...-- -+.-+-++|.+.+.--+..|+..|-+.+.-|
T Consensus 179 ~~S~D~~i~~~---I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 179 NSSADSGHLTL---ILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp GGCSSCCCGGG---TTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred cccCCHHHHHH---HHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 44332111110 1112334556665555666777777765543
No 499
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=57.65 E-value=47 Score=34.09 Aligned_cols=148 Identities=10% Similarity=0.030 Sum_probs=92.9
Q ss_pred hhHHHHHHhhh-cccHHHHHHHHHHHHHHhhccCc-chhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHHHHhccccch
Q 001349 445 KVFESVISSLE-AEWAEERIAAVGILLRCMQEDGK-CRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTF 522 (1094)
Q Consensus 445 ~~~~~l~~~l~-~~~~~~~~~~~~~l~~~~~~~~~-~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el~~~~r~~~ 522 (1094)
..++.|...+. ..+...|..|...|..+...-+. ...++.. -++++++.+.......|..+...|.++...-.
T Consensus 56 ~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~--ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--- 130 (242)
T 2qk2_A 56 ALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASA--CVPSLLEKFKEKKPNVVTALREAIDAIYASTS--- 130 (242)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHH--HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC---
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC---
Confidence 34577888884 77888888887777666543221 1122211 34566666666666777888888888765311
Q ss_pred hHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhh-hcccCCC-CCCccHHHHHHHHHHHhhcCCChHHHHHH
Q 001349 523 NEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQL-DLLAEPR-KMSIYREEAIDTLISCLRNSDYPAAQLAA 600 (1094)
Q Consensus 523 ~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l-~~~~~~~-~~~~~reea~~~~~~~l~~~~~~~~~~~~ 600 (1094)
. -..|..++.+|+...+.-+.-++.+|..+ +.. .|. ....|=..-++.|+.+|.. ....++..|
T Consensus 131 ~------------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~-~~~~~~~~~l~~l~p~l~~~l~D-~~~~VR~~A 196 (242)
T 2qk2_A 131 L------------EAQQESIVESLSNKNPSVKSETALFIARALTRT-QPTALNKKLLKLLTTSLVKTLNE-PDPTVRDSS 196 (242)
T ss_dssp H------------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-CGGGCCHHHHHHHHHHHHHHHTS-SCHHHHHHH
T ss_pred H------------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHhcC-CChHHHHHH
Confidence 1 12455567777766666666777777763 332 333 2334556778888888854 355678889
Q ss_pred HHHHHhccccc
Q 001349 601 AKTIVSLQGRF 611 (1094)
Q Consensus 601 ~~~~~~l~g~~ 611 (1094)
..++..++..+
T Consensus 197 ~~~l~~l~~~v 207 (242)
T 2qk2_A 197 AEALGTLIKLM 207 (242)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 98888877554
No 500
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=57.15 E-value=2.4e+02 Score=31.43 Aligned_cols=230 Identities=11% Similarity=0.113 Sum_probs=114.6
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEECCCC-c-----------eEEEEecccCccceeeeecCce-EEEeeCCCeEEE
Q 001349 856 KAVTGLAILQSGEMLYSGSLDKTARVWSIGNE-E-----------IHCVQVHDIKDQIQNLAVSNSI-LCFIPQGAGIKV 922 (1094)
Q Consensus 856 ~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~-~-----------~~~~~~~~~~~~V~~v~~~~~~-~~fspdg~~l~~ 922 (1094)
..|..|+. .+...+.-..||.|..|-.... + ..... ......|..++..... +++..+|+....
T Consensus 75 ~~v~~va~--G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~-v~~~~~i~~va~G~~hs~al~~~G~v~~w 151 (423)
T 3mvd_K 75 PDAVDISA--GGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDL-IDLPGKALCISAGDSHSACLLEDGRVFAW 151 (423)
T ss_dssp SSEEEEEE--CSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEE-CCCSSCEEEEEECSSEEEEEETTSCEEEE
T ss_pred CCceEEee--CCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeE-EcCCCCEEEEEcCcCeEEEEeCCCeEEEE
Confidence 34655554 4556666778999999965431 1 00011 1122345555443332 233444444444
Q ss_pred EE---eCCeEEE-----------EcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEE-----------------e
Q 001349 923 HL---RNGKTKL-----------LNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATI-----------------Q 971 (1094)
Q Consensus 923 ~~---~~g~i~l-----------~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~-----------------~ 971 (1094)
+. ..|.+-. ......|..++....+.+.-..||.|..|-....-.+-. .
T Consensus 152 G~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~ 231 (423)
T 3mvd_K 152 GSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLL 231 (423)
T ss_dssp ECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTS
T ss_pred eCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCccccccccccccccccc
Confidence 42 1121100 011234566666667777788999999996432111000 0
Q ss_pred ccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCC-----------eEEEEec-CCCCEEEEEEeCCEEEEE
Q 001349 972 TGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNY-----------NMVGSLP-TLSEVRAMVVSSELVYLG 1039 (1094)
Q Consensus 972 ~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~-----------~~~~~~~-~~~~v~~l~~spd~l~sg 1039 (1094)
.+..........|..++......+++ ...+| .|..|-.... ....... ....|..++....+.++-
T Consensus 232 ~p~~v~~~~~~~v~~i~~g~~~~~~~-~~~~g-~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G~~ht~al 309 (423)
T 3mvd_K 232 RPTQLIITRAKPFEAIWATNYCTFMR-ESQTQ-VIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQHHTVIL 309 (423)
T ss_dssp SCEEECCTTCCCEEEEEEETTEEEEE-ETTTC-CEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEECSSEEEEE
T ss_pred CCeEEeecCCccEEEEEECCcEEEEE-ECCCC-eEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEcccCeEEEE
Confidence 00001111223456665544333222 23454 7888854321 1111111 245677888777777777
Q ss_pred EcCCeEEEEECCCC------------cEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1040 CKGGTVEIWDQKRQ------------IRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1040 s~dg~I~vwd~~t~------------~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
..||.|+.|-.... .....+. .-...|..|+... ..-+.-+.||.|+.|--
T Consensus 310 t~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~-~l~~~v~~ia~G~--~hs~alt~~G~v~~wG~ 372 (423)
T 3mvd_K 310 TTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVK-KLTEKIVSVGCGE--VCSYAVTIDGKLYSWGS 372 (423)
T ss_dssp ETTCCEEEEECCGGGTTCSSSCCSCEEEEEECT-TCCSCEEEEEEET--TEEEEEETTSCEEEEEC
T ss_pred eCCCcEEEEECCCCCCCCCCCccccccCceEec-cCCCCEEEEEcCC--CeEEEEcCCCCEEEECC
Confidence 88999999965321 1112221 2222577776653 33444478999999953
Done!