Query 001352
Match_columns 1093
No_of_seqs 900 out of 5033
Neff 10.6
Searched_HMMs 46136
Date Thu Mar 28 22:35:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001352.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001352hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0293 WD40 repeat-containing 100.0 7.2E-71 1.6E-75 544.6 34.9 493 5-654 17-514 (519)
2 KOG0275 Conserved WD40 repeat- 100.0 4.8E-62 1E-66 466.4 30.8 491 5-651 7-507 (508)
3 KOG0319 WD40-repeat-containing 100.0 3.7E-59 8.1E-64 496.0 47.8 577 341-1011 25-621 (775)
4 KOG0319 WD40-repeat-containing 100.0 2.7E-55 5.9E-60 466.6 44.6 584 298-967 24-620 (775)
5 KOG0318 WD40 repeat stress pro 100.0 1.9E-52 4.2E-57 427.3 61.7 575 339-1009 22-602 (603)
6 KOG0291 WD40-repeat-containing 100.0 3.1E-50 6.8E-55 427.9 61.1 591 292-1018 12-718 (893)
7 KOG0318 WD40 repeat stress pro 100.0 6.5E-50 1.4E-54 408.9 58.1 541 328-966 52-602 (603)
8 KOG0291 WD40-repeat-containing 100.0 4E-49 8.6E-54 419.4 64.5 573 402-1055 19-703 (893)
9 KOG0306 WD40-repeat-containing 100.0 4.1E-48 8.9E-53 411.5 52.2 575 337-1013 23-668 (888)
10 KOG0271 Notchless-like WD40 re 100.0 1.3E-50 2.8E-55 397.4 27.6 333 325-715 105-479 (480)
11 KOG0271 Notchless-like WD40 re 100.0 5.6E-50 1.2E-54 392.9 29.3 367 393-915 111-479 (480)
12 KOG0306 WD40-repeat-containing 100.0 3.2E-47 7E-52 404.7 49.5 585 408-1063 33-665 (888)
13 KOG1408 WD40 repeat protein [F 100.0 2.5E-41 5.5E-46 356.4 39.8 623 337-1063 39-714 (1080)
14 KOG1408 WD40 repeat protein [F 100.0 9.5E-41 2.1E-45 352.1 41.1 509 329-918 72-714 (1080)
15 KOG1063 RNA polymerase II elon 100.0 7E-39 1.5E-43 338.9 47.3 605 341-1009 20-763 (764)
16 KOG0273 Beta-transducin family 100.0 3.6E-40 7.7E-45 333.4 34.1 345 323-764 167-522 (524)
17 KOG0272 U4/U6 small nuclear ri 100.0 2.7E-41 5.8E-46 337.2 23.2 283 333-651 173-458 (459)
18 KOG1539 WD repeat protein [Gen 100.0 2.6E-37 5.6E-42 333.8 55.5 581 341-1060 39-646 (910)
19 KOG0279 G protein beta subunit 100.0 2.3E-39 5E-44 306.2 30.3 297 328-653 8-313 (315)
20 KOG0286 G-protein beta subunit 100.0 4.7E-39 1E-43 305.8 32.1 292 329-651 49-343 (343)
21 KOG0276 Vesicle coat complex C 100.0 1.1E-37 2.4E-42 325.2 44.6 481 327-966 5-490 (794)
22 KOG0272 U4/U6 small nuclear ri 100.0 3E-40 6.5E-45 329.7 22.5 285 395-715 173-458 (459)
23 KOG1539 WD repeat protein [Gen 100.0 1.5E-35 3.3E-40 320.2 50.8 546 333-966 74-648 (910)
24 KOG0286 G-protein beta subunit 100.0 3.3E-37 7.2E-42 293.3 32.3 287 392-715 50-343 (343)
25 KOG1063 RNA polymerase II elon 100.0 1.4E-35 3E-40 314.1 45.3 591 403-1062 20-763 (764)
26 KOG0315 G-protein beta subunit 100.0 9.7E-37 2.1E-41 283.1 31.5 294 347-674 9-309 (311)
27 KOG0263 Transcription initiati 100.0 5.5E-37 1.2E-41 331.8 32.2 278 320-612 363-652 (707)
28 KOG0279 G protein beta subunit 100.0 5E-36 1.1E-40 283.7 32.1 295 732-1062 12-313 (315)
29 KOG0276 Vesicle coat complex C 100.0 7.1E-35 1.5E-39 304.3 43.9 464 393-1007 9-488 (794)
30 KOG0292 Vesicle coat complex C 100.0 2.2E-34 4.8E-39 311.7 46.3 583 331-1011 5-596 (1202)
31 KOG0295 WD40 repeat-containing 100.0 1.8E-36 3.9E-41 297.0 24.8 292 326-652 99-405 (406)
32 KOG2106 Uncharacterized conser 100.0 6.1E-33 1.3E-37 282.9 49.0 524 340-1008 70-625 (626)
33 KOG0296 Angio-associated migra 100.0 4.1E-35 8.8E-40 287.8 30.0 333 327-716 56-397 (399)
34 KOG0296 Angio-associated migra 100.0 2E-34 4.2E-39 283.1 34.3 339 437-917 59-398 (399)
35 KOG0285 Pleiotropic regulator 100.0 3.9E-35 8.4E-40 286.2 25.9 298 322-655 138-441 (460)
36 KOG0315 G-protein beta subunit 100.0 1.2E-33 2.6E-38 262.6 31.7 295 501-896 11-309 (311)
37 KOG0292 Vesicle coat complex C 100.0 3.7E-32 8.1E-37 294.6 46.4 498 394-1009 6-518 (1202)
38 KOG0645 WD40 repeat protein [G 100.0 2.3E-33 5E-38 264.5 31.3 291 328-653 7-311 (312)
39 KOG2106 Uncharacterized conser 100.0 1.3E-31 2.7E-36 273.4 45.9 523 402-1061 70-625 (626)
40 KOG0273 Beta-transducin family 100.0 8.1E-34 1.8E-38 287.5 29.6 280 335-653 235-523 (524)
41 KOG0265 U5 snRNP-specific prot 100.0 1.9E-33 4E-38 269.1 27.8 292 328-651 40-336 (338)
42 KOG2048 WD40 repeat protein [G 100.0 1.1E-29 2.3E-34 269.6 56.9 549 396-1062 24-601 (691)
43 KOG0265 U5 snRNP-specific prot 100.0 3.7E-33 8.1E-38 267.0 27.4 286 393-713 43-334 (338)
44 KOG0316 Conserved WD40 repeat- 100.0 1.9E-33 4.2E-38 258.8 24.4 292 322-651 4-297 (307)
45 KOG0284 Polyadenylation factor 100.0 1.8E-34 4E-39 286.9 17.5 283 335-653 96-380 (464)
46 KOG0295 WD40 repeat-containing 100.0 2.9E-33 6.4E-38 274.5 24.0 285 393-715 104-404 (406)
47 KOG0266 WD40 repeat-containing 100.0 1.5E-32 3.2E-37 311.2 31.7 294 328-653 151-454 (456)
48 KOG0293 WD40 repeat-containing 100.0 4.7E-33 1E-37 276.7 23.0 292 393-717 220-513 (519)
49 KOG0282 mRNA splicing factor [ 100.0 7.7E-34 1.7E-38 289.2 17.6 296 322-651 201-503 (503)
50 KOG0285 Pleiotropic regulator 100.0 4.2E-32 9.2E-37 265.0 26.7 292 393-764 147-438 (460)
51 KOG2048 WD40 repeat protein [G 100.0 1.4E-28 3E-33 261.2 52.9 547 335-966 25-601 (691)
52 KOG0263 Transcription initiati 100.0 4.2E-32 9.1E-37 294.1 25.5 247 396-655 377-651 (707)
53 KOG0281 Beta-TrCP (transducin 100.0 4.5E-33 9.8E-38 270.3 15.8 276 334-657 196-481 (499)
54 cd00200 WD40 WD40 domain, foun 100.0 1.5E-30 3.3E-35 283.3 36.7 287 329-651 3-289 (289)
55 KOG0645 WD40 repeat protein [G 100.0 2.9E-30 6.2E-35 243.7 31.3 292 733-1062 12-311 (312)
56 KOG0284 Polyadenylation factor 100.0 4.3E-32 9.4E-37 270.1 18.0 283 396-717 95-380 (464)
57 KOG0266 WD40 repeat-containing 100.0 2.8E-30 6E-35 292.7 32.5 291 395-717 157-454 (456)
58 KOG0282 mRNA splicing factor [ 100.0 1E-31 2.2E-36 273.8 17.6 290 392-715 209-503 (503)
59 KOG0278 Serine/threonine kinas 100.0 3.6E-31 7.8E-36 246.0 18.4 290 330-658 9-302 (334)
60 KOG0316 Conserved WD40 repeat- 100.0 4.6E-30 9.9E-35 236.7 23.7 269 392-678 12-283 (307)
61 KOG0281 Beta-TrCP (transducin 100.0 1.5E-31 3.3E-36 259.7 14.6 278 396-725 196-485 (499)
62 PLN00181 protein SPA1-RELATED; 100.0 7E-29 1.5E-33 304.3 39.2 294 331-652 479-792 (793)
63 KOG0640 mRNA cleavage stimulat 100.0 1.8E-29 3.9E-34 241.9 24.9 313 328-653 105-426 (430)
64 KOG1445 Tumor-specific antigen 100.0 1.2E-28 2.5E-33 257.6 32.3 697 326-1073 70-855 (1012)
65 KOG0288 WD40 repeat protein Ti 100.0 2.8E-30 6E-35 257.8 18.7 298 321-651 161-459 (459)
66 cd00200 WD40 WD40 domain, foun 100.0 2E-28 4.3E-33 266.6 35.4 285 393-715 5-289 (289)
67 KOG1407 WD40 repeat protein [F 100.0 1.8E-28 4E-33 230.0 28.8 281 327-644 12-293 (313)
68 KOG0275 Conserved WD40 repeat- 100.0 6.2E-30 1.4E-34 246.1 18.3 291 733-1060 211-507 (508)
69 PLN00181 protein SPA1-RELATED; 100.0 1.4E-27 3E-32 292.9 41.2 322 357-764 457-792 (793)
70 KOG0973 Histone transcription 100.0 2.3E-28 4.9E-33 274.8 28.8 306 334-655 12-357 (942)
71 KOG0310 Conserved WD40 repeat- 100.0 2.2E-28 4.8E-33 250.2 25.9 285 332-653 24-309 (487)
72 KOG0643 Translation initiation 100.0 1.2E-27 2.6E-32 225.3 27.8 287 391-717 4-317 (327)
73 KOG0278 Serine/threonine kinas 100.0 3.5E-29 7.5E-34 232.9 16.4 287 393-721 10-301 (334)
74 KOG0643 Translation initiation 100.0 1.6E-27 3.5E-32 224.4 27.1 287 330-654 5-318 (327)
75 KOG1446 Histone H3 (Lys4) meth 100.0 1.5E-26 3.2E-31 225.0 33.6 285 333-653 12-303 (311)
76 KOG0313 Microtubule binding pr 100.0 1E-27 2.2E-32 237.0 25.8 281 334-653 104-418 (423)
77 KOG0640 mRNA cleavage stimulat 100.0 6.1E-28 1.3E-32 231.4 22.3 307 623-1009 112-426 (430)
78 KOG0283 WD40 repeat-containing 100.0 5.4E-28 1.2E-32 265.1 23.7 309 327-655 258-578 (712)
79 KOG0641 WD40 repeat protein [G 100.0 4.1E-26 8.8E-31 208.9 30.6 307 329-653 27-349 (350)
80 PTZ00421 coronin; Provisional 100.0 3.4E-26 7.3E-31 257.0 36.0 288 334-634 19-314 (493)
81 KOG0274 Cdc4 and related F-box 100.0 6.9E-27 1.5E-31 262.1 29.3 283 334-661 207-490 (537)
82 KOG0973 Histone transcription 100.0 8.2E-27 1.8E-31 262.4 28.3 306 734-1067 12-360 (942)
83 KOG0277 Peroxisomal targeting 100.0 6.1E-27 1.3E-31 218.9 21.5 284 339-652 12-308 (311)
84 KOG1446 Histone H3 (Lys4) meth 100.0 3E-25 6.6E-30 215.8 33.4 272 393-677 10-287 (311)
85 KOG1407 WD40 repeat protein [F 100.0 4.8E-26 1.1E-30 213.9 26.6 252 393-659 16-267 (313)
86 KOG0305 Anaphase promoting com 100.0 2.7E-26 5.8E-31 246.1 28.5 279 338-655 180-463 (484)
87 KOG0313 Microtubule binding pr 100.0 2.9E-26 6.4E-31 226.8 25.2 281 395-717 103-418 (423)
88 KOG0310 Conserved WD40 repeat- 100.0 1.9E-26 4.1E-31 236.1 24.4 282 734-1061 25-308 (487)
89 KOG0772 Uncharacterized conser 100.0 7.6E-27 1.7E-31 239.2 21.3 307 322-653 154-487 (641)
90 KOG0647 mRNA export protein (c 99.9 7.8E-26 1.7E-30 217.1 26.2 275 335-642 27-312 (347)
91 KOG0299 U3 snoRNP-associated p 99.9 3.8E-26 8.2E-31 232.0 24.7 292 329-642 136-444 (479)
92 KOG2096 WD40 repeat protein [G 99.9 1.1E-25 2.3E-30 217.1 26.0 313 658-1011 79-404 (420)
93 PTZ00420 coronin; Provisional 99.9 9.4E-25 2E-29 245.6 36.7 237 393-635 70-318 (568)
94 KOG0283 WD40 repeat-containing 99.9 7.1E-26 1.5E-30 248.5 26.7 277 733-1012 265-579 (712)
95 KOG1963 WD40 repeat protein [G 99.9 1.2E-23 2.6E-28 231.5 43.8 571 393-1065 12-653 (792)
96 KOG0288 WD40 repeat protein Ti 99.9 8.9E-27 1.9E-31 232.9 17.5 285 393-715 171-459 (459)
97 KOG0268 Sof1-like rRNA process 99.9 8E-27 1.7E-31 229.1 15.7 294 325-658 56-350 (433)
98 KOG0772 Uncharacterized conser 99.9 1.2E-25 2.5E-30 230.7 24.7 297 733-1064 165-490 (641)
99 KOG0301 Phospholipase A2-activ 99.9 1.4E-25 3.1E-30 238.7 26.2 283 327-655 6-290 (745)
100 KOG0308 Conserved WD40 repeat- 99.9 6E-26 1.3E-30 239.6 21.8 352 334-717 20-393 (735)
101 PTZ00421 coronin; Provisional 99.9 1.2E-24 2.5E-29 244.6 33.6 270 396-675 19-313 (493)
102 KOG0647 mRNA export protein (c 99.9 4.5E-25 9.7E-30 212.0 25.6 275 394-681 24-309 (347)
103 KOG0641 WD40 repeat protein [G 99.9 4E-24 8.7E-29 195.9 30.6 304 734-1062 31-349 (350)
104 KOG0300 WD40 repeat-containing 99.9 1.2E-25 2.6E-30 216.2 21.2 298 325-655 138-478 (481)
105 KOG0299 U3 snoRNP-associated p 99.9 4.4E-25 9.6E-30 224.2 26.0 250 393-655 138-412 (479)
106 KOG0294 WD40 repeat-containing 99.9 1.2E-24 2.7E-29 210.2 27.4 241 800-1064 40-283 (362)
107 KOG0274 Cdc4 and related F-box 99.9 4.6E-25 1E-29 247.4 26.9 279 396-722 207-487 (537)
108 KOG0308 Conserved WD40 repeat- 99.9 1.4E-25 3.1E-30 236.8 20.3 242 402-655 29-287 (735)
109 KOG0289 mRNA splicing factor [ 99.9 1.7E-24 3.8E-29 217.7 26.0 281 398-715 220-504 (506)
110 KOG0289 mRNA splicing factor [ 99.9 5.3E-24 1.1E-28 214.3 27.6 284 336-652 220-505 (506)
111 KOG1445 Tumor-specific antigen 99.9 2.5E-23 5.3E-28 218.1 33.6 216 392-613 74-297 (1012)
112 KOG0300 WD40 repeat-containing 99.9 2.4E-24 5.2E-29 207.3 23.1 341 411-918 126-477 (481)
113 KOG0277 Peroxisomal targeting 99.9 8.2E-25 1.8E-29 204.8 18.4 244 335-608 60-308 (311)
114 KOG0268 Sof1-like rRNA process 99.9 2.9E-25 6.3E-30 218.2 16.0 284 437-766 61-346 (433)
115 KOG1036 Mitotic spindle checkp 99.9 1.3E-23 2.9E-28 203.1 27.1 270 335-643 13-294 (323)
116 KOG0305 Anaphase promoting com 99.9 3.3E-24 7.1E-29 230.1 25.3 274 402-718 182-462 (484)
117 KOG1274 WD40 repeat protein [G 99.9 9.4E-21 2E-25 209.0 52.6 278 333-650 11-297 (933)
118 KOG2096 WD40 repeat protein [G 99.9 1.3E-23 2.9E-28 202.8 26.3 298 327-653 78-402 (420)
119 KOG0294 WD40 repeat-containing 99.9 1.4E-23 3E-28 203.0 25.4 272 412-720 4-284 (362)
120 KOG1332 Vesicle coat complex C 99.9 1.7E-24 3.7E-29 201.5 18.3 252 393-654 7-287 (299)
121 PTZ00420 coronin; Provisional 99.9 5.6E-23 1.2E-27 231.3 34.3 248 415-676 50-317 (568)
122 KOG1274 WD40 repeat protein [G 99.9 2.8E-20 6.1E-25 205.2 51.8 278 394-688 10-293 (933)
123 KOG1963 WD40 repeat protein [G 99.9 2.2E-21 4.8E-26 213.9 42.7 511 440-1068 14-589 (792)
124 KOG0301 Phospholipase A2-activ 99.9 3.3E-23 7.1E-28 220.9 25.2 275 732-1062 11-288 (745)
125 KOG0264 Nucleosome remodeling 99.9 1.8E-23 4E-28 213.1 21.4 262 333-609 122-404 (422)
126 KOG0639 Transducin-like enhanc 99.9 1.2E-23 2.6E-28 214.8 20.1 290 329-652 414-703 (705)
127 KOG1273 WD40 repeat protein [G 99.9 1.2E-22 2.7E-27 196.0 24.5 299 322-655 12-324 (405)
128 KOG1332 Vesicle coat complex C 99.9 2.8E-23 6E-28 193.5 18.8 254 331-609 7-286 (299)
129 KOG0639 Transducin-like enhanc 99.9 4.5E-23 9.8E-28 210.7 21.3 283 733-1061 417-703 (705)
130 KOG2055 WD40 repeat protein [G 99.9 2.4E-22 5.2E-27 204.2 24.7 288 335-653 213-512 (514)
131 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 5.4E-21 1.2E-25 209.6 37.7 289 350-674 3-299 (300)
132 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.1E-20 2.3E-25 207.2 39.3 279 592-1018 2-288 (300)
133 KOG1538 Uncharacterized conser 99.9 2.7E-21 5.9E-26 204.1 32.3 450 444-962 14-520 (1081)
134 KOG2055 WD40 repeat protein [G 99.9 4.3E-22 9.2E-27 202.4 25.3 290 624-1009 214-512 (514)
135 KOG0646 WD40 repeat protein [G 99.9 3.3E-22 7.1E-27 204.0 24.2 293 350-677 9-331 (476)
136 KOG1036 Mitotic spindle checkp 99.9 1.2E-21 2.6E-26 189.7 26.8 272 395-684 11-293 (323)
137 KOG4283 Transcription-coupled 99.9 9.7E-22 2.1E-26 187.9 25.2 319 333-717 41-365 (397)
138 KOG1273 WD40 repeat protein [G 99.9 6.3E-22 1.4E-26 191.1 22.6 282 400-717 26-322 (405)
139 KOG0646 WD40 repeat protein [G 99.9 6.4E-22 1.4E-26 201.9 21.2 255 348-634 51-330 (476)
140 KOG0264 Nucleosome remodeling 99.9 1.3E-21 2.9E-26 199.6 23.3 253 393-654 120-405 (422)
141 KOG0650 WD40 repeat nucleolar 99.9 1.2E-21 2.7E-26 204.9 22.7 323 318-714 383-732 (733)
142 KOG1538 Uncharacterized conser 99.9 5E-20 1.1E-24 194.6 34.7 274 337-655 14-295 (1081)
143 KOG4328 WD40 protein [Function 99.9 2.8E-21 6.1E-26 196.4 24.1 302 329-654 180-496 (498)
144 KOG0267 Microtubule severing p 99.9 8.9E-23 1.9E-27 218.3 10.7 236 393-644 24-259 (825)
145 KOG0650 WD40 repeat nucleolar 99.9 4.8E-21 1E-25 200.6 22.2 323 391-762 394-732 (733)
146 KOG4283 Transcription-coupled 99.9 3.3E-20 7.2E-25 177.5 24.9 305 734-1062 42-365 (397)
147 KOG0269 WD40 repeat-containing 99.9 8.4E-21 1.8E-25 205.1 20.7 242 740-1011 92-342 (839)
148 KOG1009 Chromatin assembly com 99.9 7.7E-20 1.7E-24 183.5 23.4 306 333-657 12-376 (434)
149 KOG0267 Microtubule severing p 99.9 1.2E-21 2.5E-26 209.8 10.5 239 329-601 22-260 (825)
150 KOG0321 WD40 repeat-containing 99.9 5.3E-20 1.1E-24 194.6 22.1 288 345-655 61-393 (720)
151 KOG0269 WD40 repeat-containing 99.9 2.4E-20 5.1E-25 201.7 19.6 285 398-714 40-337 (839)
152 KOG2445 Nuclear pore complex c 99.9 3.2E-19 6.8E-24 172.4 25.0 268 332-620 10-332 (361)
153 KOG2445 Nuclear pore complex c 99.8 4.2E-19 9.1E-24 171.6 24.8 256 393-654 9-319 (361)
154 KOG0270 WD40 repeat-containing 99.8 6.6E-20 1.4E-24 186.1 19.1 243 409-659 192-455 (463)
155 KOG1034 Transcriptional repres 99.8 1.7E-19 3.6E-24 175.9 20.9 298 734-1061 37-382 (385)
156 KOG1034 Transcriptional repres 99.8 4.3E-19 9.3E-24 173.0 23.1 295 329-653 32-383 (385)
157 KOG0321 WD40 repeat-containing 99.8 3.7E-19 7.9E-24 188.3 24.2 287 748-1063 65-392 (720)
158 COG2319 FOG: WD40 repeat [Gene 99.8 1.4E-16 3E-21 185.5 47.1 373 393-918 61-443 (466)
159 KOG4378 Nuclear protein COP1 [ 99.8 4.9E-19 1.1E-23 181.3 22.3 289 358-677 12-305 (673)
160 COG2319 FOG: WD40 repeat [Gene 99.8 7.5E-17 1.6E-21 187.6 44.4 371 329-765 59-442 (466)
161 KOG0307 Vesicle coat complex C 99.8 3.6E-20 7.8E-25 210.1 15.2 296 338-655 9-329 (1049)
162 KOG4378 Nuclear protein COP1 [ 99.8 8.2E-19 1.8E-23 179.6 23.6 293 595-991 6-305 (673)
163 KOG1912 WD40 repeat protein [G 99.8 5.4E-17 1.2E-21 175.3 34.5 605 334-1013 14-745 (1062)
164 KOG1912 WD40 repeat protein [G 99.8 7.1E-17 1.5E-21 174.4 35.1 495 397-946 15-572 (1062)
165 KOG4497 Uncharacterized conser 99.8 4.9E-18 1.1E-22 165.3 23.7 409 402-910 13-425 (447)
166 KOG1009 Chromatin assembly com 99.8 1.1E-17 2.3E-22 168.2 26.8 300 735-1063 13-373 (434)
167 KOG4328 WD40 protein [Function 99.8 3.9E-18 8.4E-23 173.8 23.8 267 393-666 182-463 (498)
168 KOG0302 Ribosome Assembly prot 99.8 2.1E-18 4.6E-23 171.2 20.7 263 332-607 148-436 (440)
169 KOG2919 Guanine nucleotide-bin 99.8 1E-17 2.2E-22 163.0 23.5 290 338-644 52-361 (406)
170 KOG0303 Actin-binding protein 99.8 8E-18 1.7E-22 168.1 23.4 237 392-634 76-320 (472)
171 KOG0644 Uncharacterized conser 99.8 4.3E-19 9.4E-24 192.8 13.3 287 326-658 181-473 (1113)
172 KOG1524 WD40 repeat-containing 99.8 1.3E-16 2.8E-21 165.4 30.3 498 395-1065 12-526 (737)
173 KOG4497 Uncharacterized conser 99.8 3.6E-17 7.8E-22 159.3 24.1 337 536-1001 14-424 (447)
174 KOG2919 Guanine nucleotide-bin 99.8 1.9E-17 4.2E-22 161.0 21.7 198 805-1010 160-368 (406)
175 KOG0302 Ribosome Assembly prot 99.8 3.5E-18 7.7E-23 169.7 16.9 173 325-519 201-379 (440)
176 KOG0270 WD40 repeat-containing 99.8 7.4E-18 1.6E-22 171.4 19.6 253 347-614 192-454 (463)
177 KOG1524 WD40 repeat-containing 99.8 6E-16 1.3E-20 160.4 32.3 497 333-967 12-524 (737)
178 KOG0303 Actin-binding protein 99.8 3.8E-17 8.2E-22 163.3 22.1 236 408-656 43-297 (472)
179 KOG0307 Vesicle coat complex C 99.8 2.8E-18 6E-23 194.9 13.6 251 337-612 66-330 (1049)
180 KOG0642 Cell-cycle nuclear pro 99.8 1E-17 2.3E-22 175.5 16.1 262 392-664 289-572 (577)
181 KOG4227 WD40 repeat protein [G 99.8 6.5E-17 1.4E-21 160.8 20.8 303 326-653 47-387 (609)
182 KOG1334 WD40 repeat protein [G 99.8 7.3E-18 1.6E-22 173.0 14.2 302 326-655 133-468 (559)
183 KOG1310 WD40 repeat protein [G 99.7 1.6E-16 3.5E-21 165.1 21.0 245 436-725 44-311 (758)
184 KOG0290 Conserved WD40 repeat- 99.7 4.3E-16 9.3E-21 149.6 22.1 282 337-650 46-362 (364)
185 KOG0649 WD40 repeat protein [G 99.7 2.9E-15 6.2E-20 140.2 26.9 286 737-1060 12-314 (325)
186 KOG0322 G-protein beta subunit 99.7 2E-17 4.4E-22 156.4 12.8 249 329-608 8-322 (323)
187 PRK11028 6-phosphogluconolacto 99.7 1E-14 2.3E-19 160.8 36.6 198 807-1009 83-304 (330)
188 KOG0642 Cell-cycle nuclear pro 99.7 4.5E-17 9.8E-22 170.8 16.3 269 329-620 288-572 (577)
189 KOG4227 WD40 repeat protein [G 99.7 5.1E-16 1.1E-20 154.5 22.1 294 393-716 52-386 (609)
190 KOG2110 Uncharacterized conser 99.7 1.2E-14 2.6E-19 145.0 31.3 242 397-655 5-250 (391)
191 KOG1188 WD40 repeat protein [G 99.7 2.3E-16 5E-21 155.2 18.6 292 458-765 42-346 (376)
192 KOG0649 WD40 repeat protein [G 99.7 3.4E-15 7.5E-20 139.6 25.0 281 337-650 12-313 (325)
193 KOG0644 Uncharacterized conser 99.7 2.2E-17 4.8E-22 179.7 12.1 288 567-920 181-471 (1113)
194 KOG1007 WD repeat protein TSSC 99.7 8.2E-16 1.8E-20 147.5 21.3 260 329-609 57-361 (370)
195 KOG1007 WD repeat protein TSSC 99.7 1.3E-15 2.8E-20 146.1 22.5 182 806-1009 173-361 (370)
196 KOG0322 G-protein beta subunit 99.7 1.7E-16 3.7E-21 150.2 15.8 290 392-716 9-322 (323)
197 KOG2110 Uncharacterized conser 99.7 6.8E-15 1.5E-19 146.8 26.8 242 802-1065 4-251 (391)
198 KOG1188 WD40 repeat protein [G 99.7 6.2E-16 1.3E-20 152.3 19.3 275 350-653 42-346 (376)
199 PRK11028 6-phosphogluconolacto 99.7 2.5E-14 5.4E-19 157.7 34.3 275 349-653 3-304 (330)
200 KOG0771 Prolactin regulatory e 99.7 3.9E-16 8.5E-21 158.7 15.1 199 807-1011 148-356 (398)
201 KOG1517 Guanine nucleotide bin 99.7 1.7E-14 3.7E-19 161.7 26.3 302 581-1012 1066-1384(1387)
202 KOG1240 Protein kinase contain 99.7 4.2E-14 9E-19 161.4 29.7 255 393-655 1044-1336(1431)
203 PRK01742 tolB translocation pr 99.7 1.1E-14 2.4E-19 165.4 24.6 235 357-634 183-426 (429)
204 KOG2041 WD40 repeat protein [G 99.7 2.9E-13 6.3E-18 145.3 32.9 509 396-1008 13-618 (1189)
205 KOG1517 Guanine nucleotide bin 99.7 3.9E-14 8.5E-19 158.8 27.0 298 332-655 1061-1383(1387)
206 PF02239 Cytochrom_D1: Cytochr 99.6 1.3E-12 2.9E-17 142.6 38.0 331 456-884 6-356 (369)
207 PF02239 Cytochrom_D1: Cytochr 99.6 1.8E-13 3.9E-18 149.4 31.1 321 502-923 8-353 (369)
208 KOG1587 Cytoplasmic dynein int 99.6 4.1E-14 8.9E-19 157.8 26.2 250 396-655 241-518 (555)
209 KOG0771 Prolactin regulatory e 99.6 4.8E-15 1E-19 150.9 16.3 197 848-1063 148-355 (398)
210 COG4946 Uncharacterized protei 99.6 4.2E-11 9.2E-16 123.3 44.0 412 347-906 50-507 (668)
211 KOG0974 WD-repeat protein WDR6 99.6 9.3E-12 2E-16 141.1 41.9 277 337-655 9-290 (967)
212 KOG2394 WD40 protein DMR-N9 [G 99.6 5.3E-14 1.1E-18 146.7 22.2 247 812-1075 182-463 (636)
213 KOG0974 WD-repeat protein WDR6 99.6 1.5E-11 3.2E-16 139.5 43.1 198 334-566 86-290 (967)
214 KOG0290 Conserved WD40 repeat- 99.6 3.9E-14 8.5E-19 136.3 19.1 241 802-1052 95-356 (364)
215 KOG1334 WD40 repeat protein [G 99.6 8.1E-15 1.7E-19 151.0 15.2 296 393-717 138-466 (559)
216 KOG1523 Actin-related protein 99.6 1.4E-13 3.1E-18 134.6 22.3 230 396-638 9-264 (361)
217 KOG1587 Cytoplasmic dynein int 99.6 8.4E-14 1.8E-18 155.4 23.7 252 335-610 242-517 (555)
218 KOG1240 Protein kinase contain 99.6 1.1E-13 2.5E-18 157.9 24.2 364 655-1060 1038-1431(1431)
219 PRK01742 tolB translocation pr 99.6 4.3E-14 9.4E-19 160.5 20.2 225 327-590 195-426 (429)
220 KOG2139 WD40 repeat protein [G 99.6 9.8E-13 2.1E-17 130.7 26.7 288 337-653 100-431 (445)
221 KOG2321 WD40 repeat protein [G 99.6 2.6E-13 5.6E-18 142.7 23.9 284 333-654 49-344 (703)
222 KOG2111 Uncharacterized conser 99.6 5.1E-12 1.1E-16 124.0 31.0 241 399-655 7-258 (346)
223 KOG1310 WD40 repeat protein [G 99.6 2.3E-14 5E-19 149.3 15.5 245 327-617 42-311 (758)
224 PF04762 IKI3: IKI3 family; I 99.6 5.2E-09 1.1E-13 127.1 63.5 539 395-1014 73-689 (928)
225 KOG2139 WD40 repeat protein [G 99.6 1.2E-12 2.6E-17 130.2 25.9 260 735-1009 140-431 (445)
226 KOG1832 HIV-1 Vpr-binding prot 99.6 4.5E-15 9.8E-20 162.5 9.3 339 171-643 1014-1379(1516)
227 KOG1272 WD40-repeat-containing 99.6 1.5E-14 3.3E-19 148.0 12.0 273 337-650 131-406 (545)
228 KOG1523 Actin-related protein 99.6 1.1E-12 2.5E-17 128.4 23.9 243 529-854 9-259 (361)
229 PRK03629 tolB translocation pr 99.6 1.7E-12 3.7E-17 146.9 29.5 237 359-633 180-427 (429)
230 KOG1272 WD40-repeat-containing 99.6 2.3E-14 5E-19 146.8 12.4 270 397-689 129-403 (545)
231 KOG2111 Uncharacterized conser 99.6 1.7E-12 3.8E-17 127.2 24.6 239 804-1065 6-259 (346)
232 PRK05137 tolB translocation pr 99.5 2.3E-12 4.9E-17 147.1 29.5 237 358-633 182-432 (435)
233 PRK04922 tolB translocation pr 99.5 3E-12 6.4E-17 145.9 26.0 238 358-633 184-432 (433)
234 COG4946 Uncharacterized protei 99.5 1.4E-09 3.1E-14 112.2 42.0 522 329-1010 72-655 (668)
235 PF10282 Lactonase: Lactonase, 99.5 3.4E-10 7.4E-15 124.6 40.9 208 806-1015 89-330 (345)
236 PRK03629 tolB translocation pr 99.5 1.8E-12 4E-17 146.6 23.4 225 329-589 192-427 (429)
237 KOG2041 WD40 repeat protein [G 99.5 1.8E-10 3.8E-15 124.4 36.4 558 337-968 16-621 (1189)
238 PRK02889 tolB translocation pr 99.5 4.3E-12 9.4E-17 143.9 26.2 223 393-633 191-424 (427)
239 KOG2394 WD40 protein DMR-N9 [G 99.5 2.5E-12 5.5E-17 134.4 20.8 252 337-632 125-383 (636)
240 PRK04922 tolB translocation pr 99.5 2.4E-12 5.2E-17 146.6 22.5 227 327-589 195-432 (433)
241 COG5354 Uncharacterized protei 99.5 9.4E-11 2E-15 122.4 31.7 365 514-1001 16-421 (561)
242 PRK02889 tolB translocation pr 99.5 2.5E-12 5.4E-17 145.9 22.2 228 328-590 188-425 (427)
243 PF04762 IKI3: IKI3 family; I 99.5 4.7E-08 1E-12 119.0 58.9 519 398-1062 22-639 (928)
244 KOG2315 Predicted translation 99.5 5.9E-11 1.3E-15 125.6 29.5 286 337-661 36-352 (566)
245 KOG3881 Uncharacterized conser 99.5 6.7E-12 1.5E-16 126.6 21.5 272 335-633 55-341 (412)
246 COG5354 Uncharacterized protei 99.5 3.4E-11 7.4E-16 125.6 27.0 280 337-655 34-350 (561)
247 COG2706 3-carboxymuconate cycl 99.5 4.9E-10 1.1E-14 113.2 34.0 280 708-1013 15-327 (346)
248 TIGR02658 TTQ_MADH_Hv methylam 99.5 4.5E-10 9.8E-15 119.2 35.4 204 808-1018 109-339 (352)
249 KOG2314 Translation initiation 99.5 3.3E-11 7.1E-16 126.6 25.9 320 299-654 216-574 (698)
250 KOG2315 Predicted translation 99.4 9.6E-11 2.1E-15 124.1 29.3 336 530-918 34-391 (566)
251 KOG2314 Translation initiation 99.4 9.4E-11 2E-15 123.3 29.0 328 532-1010 212-574 (698)
252 PRK05137 tolB translocation pr 99.4 1.1E-11 2.3E-16 141.7 23.1 228 326-589 192-432 (435)
253 KOG2321 WD40 repeat protein [G 99.4 5E-11 1.1E-15 125.8 23.8 284 440-765 49-343 (703)
254 COG2706 3-carboxymuconate cycl 99.4 1.6E-09 3.4E-14 109.7 33.0 253 802-1069 38-328 (346)
255 TIGR02658 TTQ_MADH_Hv methylam 99.4 7.6E-10 1.7E-14 117.5 32.2 269 358-661 27-338 (352)
256 KOG1409 Uncharacterized conser 99.4 5E-11 1.1E-15 118.1 21.4 340 567-1010 15-395 (404)
257 PF08662 eIF2A: Eukaryotic tra 99.4 5.5E-11 1.2E-15 117.7 21.0 155 848-1018 9-187 (194)
258 PRK01029 tolB translocation pr 99.4 5E-10 1.1E-14 126.2 29.3 243 358-635 165-426 (428)
259 KOG1354 Serine/threonine prote 99.3 2.8E-10 6.2E-15 112.7 23.4 358 441-964 24-432 (433)
260 PF10282 Lactonase: Lactonase, 99.3 7.9E-09 1.7E-13 113.8 37.8 270 358-653 13-322 (345)
261 PRK01029 tolB translocation pr 99.3 1.6E-10 3.5E-15 130.1 24.7 233 330-591 179-426 (428)
262 KOG3881 Uncharacterized conser 99.3 1.3E-10 2.8E-15 117.5 20.5 117 803-920 202-323 (412)
263 KOG2659 LisH motif-containing 99.3 7E-12 1.5E-16 119.6 10.5 168 4-183 25-204 (228)
264 PRK00178 tolB translocation pr 99.3 6.8E-10 1.5E-14 127.3 29.1 237 359-633 180-427 (430)
265 PRK04792 tolB translocation pr 99.3 6.8E-10 1.5E-14 126.3 28.6 223 393-633 213-446 (448)
266 PRK00178 tolB translocation pr 99.3 1.9E-10 4E-15 131.9 23.9 226 329-589 192-427 (430)
267 TIGR02800 propeller_TolB tol-p 99.3 6.2E-10 1.3E-14 127.7 27.7 210 393-618 185-405 (417)
268 PF08662 eIF2A: Eukaryotic tra 99.3 2.4E-10 5.3E-15 113.1 20.2 162 401-571 9-185 (194)
269 PRK04792 tolB translocation pr 99.3 2.8E-10 6E-15 129.4 23.6 226 329-589 211-446 (448)
270 KOG1409 Uncharacterized conser 99.3 5.4E-11 1.2E-15 117.9 14.4 358 477-876 15-395 (404)
271 TIGR02800 propeller_TolB tol-p 99.3 1.4E-09 3.1E-14 124.7 28.8 205 824-1055 170-387 (417)
272 KOG1354 Serine/threonine prote 99.3 3.1E-10 6.8E-15 112.4 18.8 267 334-612 24-362 (433)
273 KOG4547 WD40 repeat-containing 99.2 1.2E-09 2.5E-14 117.1 22.7 194 406-610 2-221 (541)
274 KOG4547 WD40 repeat-containing 99.2 1.1E-09 2.3E-14 117.4 22.1 189 813-1011 3-222 (541)
275 TIGR03300 assembly_YfgL outer 99.2 4.2E-08 9E-13 110.5 31.6 186 458-655 67-261 (377)
276 TIGR03300 assembly_YfgL outer 99.1 1.7E-07 3.7E-12 105.6 31.8 273 351-665 68-350 (377)
277 KOG1897 Damage-specific DNA bi 99.1 9.8E-05 2.1E-09 84.9 53.5 622 333-1006 304-1001(1096)
278 PLN02919 haloacid dehalogenase 99.0 1.4E-07 3.1E-12 117.4 31.6 260 739-1013 571-892 (1057)
279 KOG3617 WD40 and TPR repeat-co 99.0 1.5E-08 3.2E-13 112.0 18.5 506 338-971 18-590 (1416)
280 PF15492 Nbas_N: Neuroblastoma 99.0 1.8E-07 3.8E-12 92.2 23.9 205 809-1018 3-268 (282)
281 KOG4190 Uncharacterized conser 99.0 2.8E-09 6.1E-14 111.8 12.2 244 393-652 731-987 (1034)
282 PLN02919 haloacid dehalogenase 99.0 2.4E-07 5.3E-12 115.3 31.2 254 807-1064 571-890 (1057)
283 KOG0280 Uncharacterized conser 99.0 4E-08 8.6E-13 96.0 18.4 254 337-611 71-335 (339)
284 KOG4190 Uncharacterized conser 99.0 2.5E-09 5.3E-14 112.2 10.9 293 328-649 728-1032(1034)
285 PRK04043 tolB translocation pr 99.0 7.5E-08 1.6E-12 107.7 23.1 197 337-566 189-402 (419)
286 KOG1064 RAVE (regulator of V-A 99.0 4.9E-09 1.1E-13 125.1 13.6 202 393-620 2204-2409(2439)
287 KOG1064 RAVE (regulator of V-A 98.9 1E-08 2.2E-13 122.4 13.4 224 411-662 2182-2407(2439)
288 KOG0280 Uncharacterized conser 98.9 2.8E-07 6.1E-12 90.2 19.7 268 358-655 46-335 (339)
289 PRK04043 tolB translocation pr 98.9 1.4E-06 3E-11 97.7 28.3 213 825-1067 170-403 (419)
290 PF07433 DUF1513: Protein of u 98.8 2E-06 4.3E-11 88.1 25.5 185 808-1002 55-278 (305)
291 KOG0309 Conserved WD40 repeat- 98.8 3.6E-08 7.8E-13 107.6 12.6 210 391-610 108-340 (1081)
292 PRK11138 outer membrane biogen 98.8 7.3E-06 1.6E-10 92.6 32.2 219 815-1061 161-393 (394)
293 KOG4532 WD40-like repeat conta 98.8 5.7E-07 1.2E-11 86.7 19.0 148 400-549 161-321 (344)
294 PF07433 DUF1513: Protein of u 98.8 8E-06 1.7E-10 83.7 28.3 204 808-1018 9-256 (305)
295 KOG3617 WD40 and TPR repeat-co 98.8 8.7E-07 1.9E-11 98.4 22.7 339 400-820 18-372 (1416)
296 KOG3914 WD repeat protein WDR4 98.8 7.1E-08 1.5E-12 98.8 13.4 165 337-527 64-232 (390)
297 PF15492 Nbas_N: Neuroblastoma 98.8 7.4E-06 1.6E-10 81.0 26.2 248 339-620 1-270 (282)
298 COG5170 CDC55 Serine/threonine 98.8 1.2E-07 2.7E-12 92.9 13.4 258 802-1063 25-368 (460)
299 KOG3914 WD repeat protein WDR4 98.7 1.6E-07 3.4E-12 96.3 12.9 159 848-1018 66-232 (390)
300 KOG1832 HIV-1 Vpr-binding prot 98.7 1.3E-08 2.9E-13 112.9 5.5 215 393-640 1097-1318(1516)
301 PRK11138 outer membrane biogen 98.7 1.8E-05 4E-10 89.4 31.2 153 458-618 71-232 (394)
302 PF13360 PQQ_2: PQQ-like domai 98.7 5.1E-06 1.1E-10 87.0 25.0 223 823-1069 2-237 (238)
303 PF06433 Me-amine-dh_H: Methyl 98.7 1.4E-05 3.1E-10 82.7 26.8 205 808-1018 99-329 (342)
304 KOG0309 Conserved WD40 repeat- 98.7 1.9E-07 4.1E-12 102.1 13.7 294 397-718 24-340 (1081)
305 PF08450 SGL: SMP-30/Gluconola 98.7 3.7E-05 7.9E-10 80.7 30.1 221 740-998 4-244 (246)
306 PF08450 SGL: SMP-30/Gluconola 98.7 5E-05 1.1E-09 79.6 30.6 221 339-598 3-244 (246)
307 KOG1897 Damage-specific DNA bi 98.6 0.0025 5.5E-08 73.8 58.4 619 341-1066 263-946 (1096)
308 KOG4714 Nucleoporin [Nuclear s 98.6 7.5E-07 1.6E-11 85.6 13.7 209 338-565 39-255 (319)
309 KOG0882 Cyclophilin-related pe 98.6 1.3E-06 2.8E-11 90.6 16.0 299 734-1059 8-369 (558)
310 COG5170 CDC55 Serine/threonine 98.6 8E-07 1.7E-11 87.3 13.6 118 801-919 170-311 (460)
311 KOG1920 IkappaB kinase complex 98.6 7.1E-05 1.5E-09 88.0 31.4 243 580-921 69-326 (1265)
312 KOG4649 PQQ (pyrrolo-quinoline 98.6 0.00059 1.3E-08 66.3 31.9 137 501-648 24-160 (354)
313 PF06433 Me-amine-dh_H: Methyl 98.6 3.8E-05 8.2E-10 79.7 25.6 285 556-885 17-330 (342)
314 KOG4532 WD40-like repeat conta 98.6 1E-05 2.3E-10 78.3 19.9 201 814-1021 83-294 (344)
315 PRK02888 nitrous-oxide reducta 98.5 2E-05 4.3E-10 88.4 24.8 183 810-1010 199-405 (635)
316 KOG1645 RING-finger-containing 98.5 1.4E-05 3.1E-10 82.0 21.4 251 392-653 188-461 (463)
317 PF13360 PQQ_2: PQQ-like domai 98.5 1.4E-05 3E-10 83.7 22.8 195 814-1016 35-237 (238)
318 KOG0882 Cyclophilin-related pe 98.5 2.4E-06 5.2E-11 88.6 15.3 257 396-662 8-314 (558)
319 KOG2695 WD40 repeat protein [G 98.5 3.6E-07 7.7E-12 91.4 9.1 168 339-530 215-388 (425)
320 PF00930 DPPIV_N: Dipeptidyl p 98.5 5.7E-05 1.2E-09 83.7 27.4 267 344-643 1-347 (353)
321 KOG0396 Uncharacterized conser 98.5 1.7E-06 3.7E-11 87.9 12.9 173 5-190 115-298 (389)
322 PRK02888 nitrous-oxide reducta 98.5 3.5E-05 7.5E-10 86.6 24.1 105 810-918 283-405 (635)
323 KOG1920 IkappaB kinase complex 98.5 5.3E-05 1.2E-09 89.0 26.0 271 735-1061 68-364 (1265)
324 PF00930 DPPIV_N: Dipeptidyl p 98.5 0.00023 4.9E-09 78.9 30.3 304 539-906 1-346 (353)
325 PF00400 WD40: WD domain, G-be 98.4 5.2E-07 1.1E-11 62.8 6.0 39 877-915 1-39 (39)
326 KOG4649 PQQ (pyrrolo-quinoline 98.4 0.00042 9.1E-09 67.3 26.8 144 342-513 17-160 (354)
327 KOG1275 PAB-dependent poly(A) 98.4 4.7E-06 1E-10 94.1 15.8 180 814-1007 146-340 (1118)
328 KOG4714 Nucleoporin [Nuclear s 98.4 3.8E-06 8.1E-11 81.0 12.4 206 840-1060 85-316 (319)
329 PF10607 CLTH: CTLH/CRA C-term 98.4 8.2E-07 1.8E-11 84.0 7.8 134 38-183 5-141 (145)
330 PF14583 Pectate_lyase22: Olig 98.3 0.0015 3.3E-08 69.5 30.6 280 341-652 41-380 (386)
331 KOG3621 WD40 repeat-containing 98.3 0.00017 3.7E-09 80.1 23.2 140 334-494 32-178 (726)
332 KOG2114 Vacuolar assembly/sort 98.2 9.1E-05 2E-09 83.8 20.1 206 851-1071 30-252 (933)
333 PF00400 WD40: WD domain, G-be 98.2 5.8E-06 1.3E-10 57.5 6.4 39 834-873 1-39 (39)
334 PF14583 Pectate_lyase22: Olig 98.2 0.0049 1.1E-07 65.7 30.8 300 536-916 41-380 (386)
335 KOG2066 Vacuolar assembly/sort 98.2 3.9E-05 8.4E-10 86.1 15.8 188 845-1062 40-233 (846)
336 KOG1645 RING-finger-containing 98.2 0.00012 2.5E-09 75.5 17.8 250 328-609 186-461 (463)
337 KOG2114 Vacuolar assembly/sort 98.2 0.00036 7.7E-09 79.2 22.9 201 810-1017 30-251 (933)
338 KOG2695 WD40 repeat protein [G 98.2 6.4E-06 1.4E-10 82.7 8.3 139 327-484 245-386 (425)
339 KOG1275 PAB-dependent poly(A) 98.1 4.9E-05 1.1E-09 86.2 15.8 187 458-654 149-343 (1118)
340 cd00216 PQQ_DH Dehydrogenases 98.1 0.0036 7.7E-08 72.6 30.6 138 501-645 62-238 (488)
341 KOG2066 Vacuolar assembly/sort 98.1 0.00029 6.3E-09 79.4 20.2 186 737-966 41-233 (846)
342 smart00668 CTLH C-terminal to 98.0 2.9E-06 6.2E-11 65.3 2.5 53 37-90 4-56 (58)
343 PF11768 DUF3312: Protein of u 98.0 0.004 8.8E-08 68.7 26.8 115 940-1067 208-334 (545)
344 cd00216 PQQ_DH Dehydrogenases 98.0 0.0039 8.5E-08 72.3 28.1 246 351-622 113-437 (488)
345 PF02897 Peptidase_S9_N: Proly 98.0 0.017 3.6E-07 66.1 32.8 252 337-615 125-410 (414)
346 PF08513 LisH: LisH; InterPro 97.9 1.4E-05 3E-10 49.0 3.8 27 6-32 1-27 (27)
347 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.9 0.048 1E-06 63.5 35.7 110 502-619 71-199 (527)
348 PF06977 SdiA-regulated: SdiA- 97.9 0.004 8.6E-08 63.6 23.0 195 331-548 17-239 (248)
349 PF11768 DUF3312: Protein of u 97.9 0.0006 1.3E-08 74.9 17.6 114 804-920 206-332 (545)
350 COG0823 TolB Periplasmic compo 97.9 0.00098 2.1E-08 74.3 19.6 195 327-550 184-389 (425)
351 smart00667 LisH Lissencephaly 97.9 2.2E-05 4.7E-10 52.5 4.1 32 4-35 2-33 (34)
352 PRK13616 lipoprotein LpqB; Pro 97.9 0.0038 8.2E-08 72.8 25.1 222 845-1081 350-587 (591)
353 PF08596 Lgl_C: Lethal giant l 97.8 0.0049 1.1E-07 68.1 24.4 278 737-1061 3-334 (395)
354 PF08596 Lgl_C: Lethal giant l 97.8 0.0043 9.3E-08 68.5 22.8 254 337-597 3-324 (395)
355 PF04841 Vps16_N: Vps16, N-ter 97.8 0.019 4.1E-07 64.5 27.8 199 809-1019 34-256 (410)
356 PF06977 SdiA-regulated: SdiA- 97.7 0.015 3.2E-07 59.5 24.1 201 802-1006 20-247 (248)
357 PF04053 Coatomer_WDAD: Coatom 97.7 0.0037 8E-08 70.0 21.7 225 393-654 28-263 (443)
358 COG3391 Uncharacterized conser 97.7 0.011 2.3E-07 66.1 25.4 206 806-1018 76-292 (381)
359 COG3490 Uncharacterized protei 97.7 0.017 3.6E-07 57.5 22.9 256 582-916 70-347 (366)
360 PF02897 Peptidase_S9_N: Proly 97.7 0.027 5.8E-07 64.4 29.1 248 399-657 125-408 (414)
361 COG0823 TolB Periplasmic compo 97.7 0.0042 9E-08 69.4 21.5 173 825-1013 174-362 (425)
362 PRK13616 lipoprotein LpqB; Pro 97.7 0.0026 5.7E-08 74.1 20.1 185 804-1002 350-561 (591)
363 PF04841 Vps16_N: Vps16, N-ter 97.7 0.043 9.4E-07 61.6 29.2 232 398-663 81-324 (410)
364 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.6 0.089 1.9E-06 61.2 32.1 197 409-614 69-338 (527)
365 COG3391 Uncharacterized conser 97.6 0.16 3.5E-06 56.8 32.9 251 399-662 32-292 (381)
366 PF04053 Coatomer_WDAD: Coatom 97.6 0.007 1.5E-07 67.8 21.3 220 738-1012 35-265 (443)
367 COG3490 Uncharacterized protei 97.5 0.026 5.7E-07 56.2 21.2 232 808-1061 72-347 (366)
368 KOG3621 WD40 repeat-containing 97.5 0.0015 3.2E-08 73.0 13.7 138 396-539 32-179 (726)
369 COG3386 Gluconolactonase [Carb 97.5 0.031 6.8E-07 59.3 23.0 224 340-598 29-274 (307)
370 PF00780 CNH: CNH domain; Int 97.5 0.11 2.3E-06 55.6 27.8 229 346-620 6-266 (275)
371 PF00780 CNH: CNH domain; Int 97.4 0.11 2.5E-06 55.4 27.5 231 407-663 5-265 (275)
372 KOG1008 Uncharacterized conser 97.4 7.3E-05 1.6E-09 81.6 1.9 184 487-677 57-255 (783)
373 TIGR03074 PQQ_membr_DH membran 97.3 0.71 1.5E-05 55.8 38.8 206 458-663 196-487 (764)
374 KOG1008 Uncharacterized conser 97.3 9.3E-05 2E-09 80.9 1.8 204 334-564 55-275 (783)
375 KOG2817 Predicted E3 ubiquitin 97.2 0.0018 4E-08 67.6 10.2 107 7-115 118-237 (394)
376 PF08553 VID27: VID27 cytoplas 97.2 0.017 3.6E-07 68.4 19.2 149 856-1009 492-647 (794)
377 COG3386 Gluconolactonase [Carb 97.2 0.11 2.4E-06 55.2 23.7 214 449-674 31-263 (307)
378 PF03178 CPSF_A: CPSF A subuni 97.2 0.11 2.4E-06 56.9 24.6 178 358-564 2-202 (321)
379 PF14655 RAB3GAP2_N: Rab3 GTPa 97.2 0.13 2.9E-06 56.6 24.4 83 802-884 306-407 (415)
380 PF03178 CPSF_A: CPSF A subuni 97.2 0.023 5.1E-07 62.1 19.0 214 782-1006 5-262 (321)
381 PF14655 RAB3GAP2_N: Rab3 GTPa 97.1 0.22 4.8E-06 55.0 25.5 84 531-620 308-409 (415)
382 PRK10115 protease 2; Provision 97.0 1.2 2.7E-05 53.9 32.6 244 337-612 128-397 (686)
383 PRK10115 protease 2; Provision 97.0 0.91 2E-05 54.9 31.5 245 398-655 127-396 (686)
384 KOG4640 Anaphase-promoting com 97.0 0.0036 7.8E-08 69.1 9.9 94 336-452 21-115 (665)
385 PF14870 PSII_BNR: Photosynthe 96.9 0.71 1.5E-05 48.8 25.9 158 841-1006 141-301 (302)
386 PF10647 Gmad1: Lipoprotein Lp 96.9 0.39 8.4E-06 50.1 23.6 203 846-1073 25-245 (253)
387 smart00320 WD40 WD40 repeats. 96.8 0.0024 5.3E-08 43.6 5.0 39 877-915 2-40 (40)
388 PF10647 Gmad1: Lipoprotein Lp 96.7 0.17 3.7E-06 52.7 19.6 147 804-955 24-183 (253)
389 KOG4640 Anaphase-promoting com 96.7 0.0083 1.8E-07 66.3 9.5 93 845-946 21-114 (665)
390 KOG2395 Protein involved in va 96.6 0.049 1.1E-06 59.2 14.6 144 408-563 344-499 (644)
391 PF05096 Glu_cyclase_2: Glutam 96.6 0.97 2.1E-05 46.1 23.0 188 803-999 44-250 (264)
392 PRK13684 Ycf48-like protein; P 96.6 1.6 3.4E-05 47.8 29.9 157 887-1062 172-331 (334)
393 PF07995 GSDH: Glucose / Sorbo 96.6 1.6 3.4E-05 47.8 26.7 113 337-466 3-135 (331)
394 PF08553 VID27: VID27 cytoplas 96.5 0.064 1.4E-06 63.6 16.1 145 455-608 493-646 (794)
395 KOG2395 Protein involved in va 96.5 0.045 9.7E-07 59.4 13.3 146 859-1010 348-501 (644)
396 KOG2079 Vacuolar assembly/sort 96.5 0.18 4E-06 59.8 19.2 99 350-473 101-202 (1206)
397 PHA02713 hypothetical protein; 96.5 0.17 3.7E-06 59.6 19.7 197 856-1076 303-545 (557)
398 KOG4441 Proteins containing BT 96.5 0.23 5.1E-06 58.3 20.6 234 407-656 283-549 (571)
399 PF07995 GSDH: Glucose / Sorbo 96.4 1.2 2.7E-05 48.5 24.6 239 805-1057 3-330 (331)
400 PF14783 BBS2_Mid: Ciliary BBS 96.4 0.16 3.4E-06 43.8 13.5 101 890-1005 2-110 (111)
401 KOG2079 Vacuolar assembly/sort 96.4 0.039 8.4E-07 65.1 13.0 104 408-517 98-202 (1206)
402 smart00320 WD40 WD40 repeats. 96.3 0.01 2.3E-07 40.2 5.6 39 834-873 2-40 (40)
403 PHA02713 hypothetical protein; 96.3 0.17 3.6E-06 59.7 18.7 202 453-665 303-545 (557)
404 PF15390 DUF4613: Domain of un 96.3 0.24 5.1E-06 55.1 17.7 159 845-1011 20-188 (671)
405 PF05694 SBP56: 56kDa selenium 96.1 1.1 2.4E-05 48.8 21.1 206 346-566 86-344 (461)
406 PF14727 PHTB1_N: PTHB1 N-term 96.1 3.2 7E-05 46.2 32.9 282 344-658 33-365 (418)
407 PF14727 PHTB1_N: PTHB1 N-term 96.1 3.3 7.1E-05 46.1 30.8 276 746-1062 36-360 (418)
408 COG3204 Uncharacterized protei 96.0 2.1 4.6E-05 43.7 22.8 171 840-1011 81-265 (316)
409 COG3204 Uncharacterized protei 96.0 1.9 4.2E-05 44.1 21.1 204 734-963 84-309 (316)
410 KOG4499 Ca2+-binding protein R 96.0 1.2 2.7E-05 43.5 18.7 137 442-590 108-264 (310)
411 PF05694 SBP56: 56kDa selenium 95.9 1.3 2.8E-05 48.3 20.3 154 499-652 86-276 (461)
412 PF14870 PSII_BNR: Photosynthe 95.8 3.2 6.8E-05 44.1 29.3 230 805-1059 63-301 (302)
413 PF14783 BBS2_Mid: Ciliary BBS 95.6 0.4 8.8E-06 41.3 12.6 98 342-469 9-109 (111)
414 PF12894 Apc4_WD40: Anaphase-p 95.6 0.057 1.2E-06 38.6 6.2 32 396-427 10-41 (47)
415 KOG4441 Proteins containing BT 95.5 0.88 1.9E-05 53.5 19.5 225 601-878 301-549 (571)
416 PF05096 Glu_cyclase_2: Glutam 95.4 3.6 7.9E-05 42.1 21.9 192 736-955 45-248 (264)
417 TIGR03074 PQQ_membr_DH membran 95.2 5.1 0.00011 48.7 24.9 204 814-1018 194-486 (764)
418 KOG2444 WD40 repeat protein [G 95.1 0.06 1.3E-06 52.3 6.6 102 817-918 72-178 (238)
419 KOG4499 Ca2+-binding protein R 95.0 0.28 6.1E-06 47.7 10.9 114 339-465 161-276 (310)
420 TIGR02604 Piru_Ver_Nterm putat 94.9 6.4 0.00014 43.9 23.3 139 804-954 14-200 (367)
421 KOG1898 Splicing factor 3b, su 94.8 13 0.00029 44.9 30.8 104 809-917 939-1048(1205)
422 PF10168 Nup88: Nuclear pore c 94.7 4.4 9.4E-05 48.8 22.3 72 845-918 85-180 (717)
423 COG4257 Vgb Streptogramin lyas 94.6 3.9 8.4E-05 41.3 17.6 192 846-1064 63-264 (353)
424 PF12894 Apc4_WD40: Anaphase-p 94.6 0.13 2.7E-06 36.8 5.6 34 844-879 11-44 (47)
425 PF12234 Rav1p_C: RAVE protein 94.4 1 2.2E-05 52.4 15.6 124 840-965 25-155 (631)
426 KOG2280 Vacuolar assembly/sort 94.4 3.1 6.7E-05 48.1 18.8 182 825-1018 65-255 (829)
427 PF10168 Nup88: Nuclear pore c 94.2 1.1 2.3E-05 53.9 15.8 94 979-1074 84-191 (717)
428 PHA03098 kelch-like protein; P 94.2 1.8 3.8E-05 51.4 17.9 153 499-656 342-514 (534)
429 PF12234 Rav1p_C: RAVE protein 94.0 1.3 2.9E-05 51.5 15.5 112 444-563 31-155 (631)
430 KOG2444 WD40 repeat protein [G 94.0 0.19 4.2E-06 48.9 7.2 106 408-519 69-178 (238)
431 KOG1898 Splicing factor 3b, su 93.9 20 0.00043 43.5 40.9 121 943-1075 939-1061(1205)
432 PF14761 HPS3_N: Hermansky-Pud 93.5 3.7 8.1E-05 40.3 15.2 150 900-1061 29-213 (215)
433 KOG2377 Uncharacterized conser 93.4 2.4 5.3E-05 45.7 14.7 146 846-998 24-172 (657)
434 PF03022 MRJP: Major royal jel 93.0 10 0.00022 40.3 19.3 189 806-998 3-254 (287)
435 PHA03098 kelch-like protein; P 93.0 2.9 6.3E-05 49.6 17.1 195 408-614 294-516 (534)
436 TIGR03118 PEPCTERM_chp_1 conse 92.8 14 0.0003 38.4 22.8 206 806-1019 25-289 (336)
437 TIGR02604 Piru_Ver_Nterm putat 92.7 3.4 7.5E-05 46.0 16.0 151 845-1000 14-204 (367)
438 KOG2280 Vacuolar assembly/sort 92.6 9.3 0.0002 44.5 18.6 164 399-573 85-255 (829)
439 KOG3630 Nuclear pore complex, 92.4 1.9 4.1E-05 52.0 13.5 146 803-954 100-260 (1405)
440 PHA02790 Kelch-like protein; P 92.4 5.7 0.00012 46.1 17.9 184 814-1013 271-474 (480)
441 PF03022 MRJP: Major royal jel 92.4 14 0.00031 39.2 19.3 167 467-641 35-253 (287)
442 COG3292 Predicted periplasmic 92.3 24 0.00051 39.9 22.2 272 337-649 166-443 (671)
443 COG3823 Glutamine cyclotransfe 92.1 8.2 0.00018 37.4 14.7 102 814-918 55-159 (262)
444 KOG1916 Nuclear protein, conta 92.1 0.14 3E-06 59.3 3.8 140 866-1009 110-265 (1283)
445 COG1520 FOG: WD40-like repeat 92.0 22 0.00048 39.7 21.5 201 811-1019 65-278 (370)
446 KOG1916 Nuclear protein, conta 91.9 0.32 6.9E-06 56.5 6.5 165 802-971 131-328 (1283)
447 PF13449 Phytase-like: Esteras 91.8 22 0.00049 38.7 22.4 164 844-1009 19-249 (326)
448 PF15390 DUF4613: Domain of un 91.7 28 0.00061 39.6 25.7 58 942-999 343-404 (671)
449 PF14761 HPS3_N: Hermansky-Pud 91.5 11 0.00023 37.2 15.4 111 806-919 20-165 (215)
450 TIGR03118 PEPCTERM_chp_1 conse 91.4 20 0.00043 37.3 23.4 214 444-663 24-289 (336)
451 PLN00033 photosystem II stabil 91.3 28 0.00062 38.8 32.4 150 890-1059 241-396 (398)
452 PF14781 BBS2_N: Ciliary BBSom 91.2 8.3 0.00018 34.7 13.0 122 340-481 3-132 (136)
453 PF08728 CRT10: CRT10; InterP 91.1 5.8 0.00013 46.8 15.6 173 815-1008 49-245 (717)
454 KOG2377 Uncharacterized conser 91.1 1.1 2.4E-05 48.1 8.9 122 335-476 66-187 (657)
455 COG3292 Predicted periplasmic 91.0 32 0.0007 38.9 23.5 72 396-475 163-234 (671)
456 PHA02790 Kelch-like protein; P 91.0 9.2 0.0002 44.4 17.5 148 499-655 318-472 (480)
457 KOG1900 Nuclear pore complex, 90.7 15 0.00033 45.8 18.9 160 849-1010 83-273 (1311)
458 KOG1900 Nuclear pore complex, 90.6 5.9 0.00013 49.1 15.4 172 319-519 63-273 (1311)
459 TIGR03606 non_repeat_PQQ dehyd 90.5 35 0.00077 38.6 27.6 61 336-409 30-90 (454)
460 PF10214 Rrn6: RNA polymerase 90.4 55 0.0012 40.6 27.8 173 802-1011 78-278 (765)
461 PLN00033 photosystem II stabil 90.3 35 0.00075 38.2 28.4 149 847-1006 241-396 (398)
462 PF10313 DUF2415: Uncharacteri 90.0 1.3 2.8E-05 30.7 5.5 32 398-429 1-35 (43)
463 PF05935 Arylsulfotrans: Aryls 89.7 22 0.00047 41.2 19.0 147 865-1021 126-313 (477)
464 PRK14131 N-acetylneuraminic ac 89.7 33 0.00072 38.4 20.2 39 603-643 314-352 (376)
465 COG1520 FOG: WD40-like repeat 89.7 39 0.00084 37.8 22.9 199 412-620 71-279 (370)
466 KOG4460 Nuclear pore complex, 89.3 6.6 0.00014 43.4 13.0 95 979-1075 103-211 (741)
467 PF10433 MMS1_N: Mono-function 89.3 51 0.0011 38.7 39.9 80 815-897 418-503 (504)
468 KOG2247 WD40 repeat-containing 89.2 0.087 1.9E-06 56.8 -0.9 243 740-1018 39-289 (615)
469 PF02333 Phytase: Phytase; In 88.9 40 0.00087 37.0 22.9 188 458-655 70-292 (381)
470 KOG3630 Nuclear pore complex, 88.9 7.5 0.00016 47.3 14.1 99 805-905 157-261 (1405)
471 PF13449 Phytase-like: Esteras 88.4 34 0.00074 37.3 18.5 151 802-954 18-231 (326)
472 PF11725 AvrE: Pathogenicity f 88.1 67 0.0015 41.7 21.9 150 333-519 360-517 (1774)
473 COG5167 VID27 Protein involved 88.1 21 0.00045 39.5 15.6 149 448-608 472-631 (776)
474 TIGR03548 mutarot_permut cycli 87.6 47 0.001 36.2 21.6 108 458-568 75-198 (323)
475 PF10313 DUF2415: Uncharacteri 87.4 2.5 5.4E-05 29.3 5.5 32 980-1011 1-35 (43)
476 COG5276 Uncharacterized conser 87.4 38 0.00083 34.9 25.7 276 580-917 87-369 (370)
477 PF07676 PD40: WD40-like Beta 87.3 1.1 2.3E-05 30.7 3.9 30 334-363 7-38 (39)
478 PRK13684 Ycf48-like protein; P 87.0 51 0.0011 36.1 32.4 154 803-965 172-330 (334)
479 KOG1983 Tomosyn and related SN 87.0 11 0.00024 47.5 15.1 69 939-1013 200-268 (993)
480 COG5167 VID27 Protein involved 87.0 15 0.00032 40.6 13.8 143 812-966 476-632 (776)
481 PF11725 AvrE: Pathogenicity f 86.8 58 0.0012 42.2 20.4 133 863-1004 619-767 (1774)
482 PF10395 Utp8: Utp8 family; I 86.7 75 0.0016 37.6 24.0 242 810-1062 34-305 (670)
483 COG4590 ABC-type uncharacteriz 86.6 2.3 5.1E-05 45.7 7.6 158 802-969 219-389 (733)
484 PF07250 Glyoxal_oxid_N: Glyox 86.5 16 0.00035 37.4 13.3 148 513-663 49-207 (243)
485 COG4590 ABC-type uncharacteriz 86.2 21 0.00046 38.8 14.2 163 734-920 219-389 (733)
486 COG3823 Glutamine cyclotransfe 86.0 25 0.00054 34.3 13.1 150 499-658 55-209 (262)
487 TIGR03606 non_repeat_PQQ dehyd 85.6 18 0.00039 40.9 14.4 113 887-1000 29-166 (454)
488 PF07569 Hira: TUP1-like enhan 85.5 5.8 0.00013 40.1 9.7 74 943-1017 16-103 (219)
489 PF07569 Hira: TUP1-like enhan 85.1 3.8 8.3E-05 41.4 8.2 74 895-968 18-97 (219)
490 PLN02193 nitrile-specifier pro 84.8 84 0.0018 36.4 21.4 153 458-616 231-417 (470)
491 PRK13613 lipoprotein LpqB; Pro 84.7 94 0.002 37.0 21.0 225 823-1069 334-586 (599)
492 COG4257 Vgb Streptogramin lyas 84.1 53 0.0011 33.6 23.0 166 792-966 136-305 (353)
493 TIGR03548 mutarot_permut cycli 84.1 69 0.0015 34.9 20.0 111 898-1013 72-198 (323)
494 KOG3616 Selective LIM binding 84.0 26 0.00056 40.6 14.4 194 845-1056 15-238 (1636)
495 PF12657 TFIIIC_delta: Transcr 83.1 5.3 0.00012 38.8 8.1 31 398-428 86-122 (173)
496 TIGR02276 beta_rpt_yvtn 40-res 83.1 4.7 0.0001 27.8 5.7 29 345-373 1-29 (42)
497 KOG1983 Tomosyn and related SN 82.9 30 0.00064 43.8 16.2 32 337-369 37-68 (993)
498 PF08728 CRT10: CRT10; InterP 82.7 4.2 9.2E-05 47.9 8.2 135 337-473 102-245 (717)
499 PF12657 TFIIIC_delta: Transcr 82.4 8 0.00017 37.5 9.0 31 888-918 86-122 (173)
500 smart00036 CNH Domain found in 81.6 81 0.0018 33.9 30.0 241 344-619 10-280 (302)
No 1
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.2e-71 Score=544.60 Aligned_cols=493 Identities=20% Similarity=0.311 Sum_probs=415.7
Q ss_pred hHHHHHHHHHhhhhcChHHHHHHHHHhcCCChh---HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHHHhhhh
Q 001352 5 NKDLVFLILQFLNEEGFTESAHMLERESRFYFD---MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNF 81 (1093)
Q Consensus 5 ~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~~~---~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~ 81 (1093)
+.|++|++.|+|+.+||.+|+.+||.|||+.++ .+.|.+++++|+|+.++..+..+. .++.....++.|++.||+|
T Consensus 17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~-~~de~~~~ea~fLv~kQ~f 95 (519)
T KOG0293|consen 17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRIS-FEDERNRKEAMFLVNKQIF 95 (519)
T ss_pred cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhcc-CcchhhhHHHHHHHHHHHH
Confidence 458999999999999999999999999999876 899999999999999999988773 3334556679999999999
Q ss_pred hhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcccCcccccccccccCCChHHHHHHHHHHHhhcccCcccccc
Q 001352 82 FEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGK 161 (1093)
Q Consensus 82 lEll~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~R~~l~~~l~~~~~~~~~~~~~ 161 (1093)
||++..|...+|+.+||+...++. .+.++|++|+.-+..++.....+... .......|.+|+++|+++|||+++
T Consensus 96 LEf~k~~~is~al~~l~~~~~~lr-~~~kk~~el~~sll~sn~~~~ne~~~-~~~~~n~R~~ll~elskyi~p~il---- 169 (519)
T KOG0293|consen 96 LEFLKTGSISHALPVLRNPVLYLR-KNKKKFHELASSLLVSNDQFSNEENT-TAQLNNERDKLLDELSKYIPPNIL---- 169 (519)
T ss_pred HHHHhhccHhhhhHhhhcchhhhh-hhHHHHHHHHHHHhccccccccccch-hhhhchhHHHHHHHHHhhCCHhhc----
Confidence 999999999999999999888876 47888999988776654433333222 112367899999999999999999
Q ss_pred cCCCCCcchHHHHHHHHhHHhhhhcCCCCCCCCCCCCcceecccCCCCCCCcCCCCCCCCCCCCCCCCCCcccccCCccc
Q 001352 162 LKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLT 241 (1093)
Q Consensus 162 ~~~~~~p~~rL~~ll~qa~~~q~~~c~~~~~~~~~~sl~~d~~c~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 241 (1093)
+|++||+.||+||+++|+.+|+||+ +.+..|||.||.|++ .++
T Consensus 170 -----lP~rRLehLl~qAv~~Q~d~cvyhn-sldsvsll~Dh~c~~------~qi------------------------- 212 (519)
T KOG0293|consen 170 -----LPKRRLEHLLEQAVKYQRDSCVYHN-SLDSVSLLSDHFCGR------LQI------------------------- 212 (519)
T ss_pred -----CChHHHHHHHHHHHHHHHhHhHHhc-ccchhhhhhhcccCc------ccC-------------------------
Confidence 9999999999999999999999999 555589999999987 332
Q ss_pred CcccccccccCCCCCcccccccCCCCCCCcccCCCcccccccCCCcceecCcCCCCcCCCCCCcccccccccccCCCccC
Q 001352 242 DSAVSFVALSLSDPTNKVAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFS 321 (1093)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~fsP~~s~~~~~~~~~~~~~~~ 321 (1093)
T Consensus 213 -------------------------------------------------------------------------------- 212 (519)
T KOG0293|consen 213 -------------------------------------------------------------------------------- 212 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CchHHHHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeE
Q 001352 322 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 401 (1093)
Q Consensus 322 ~~p~~~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 401 (1093)
|....++|..|+++||.+.||++|+| ||+++.|.+..||++.....+.- ...+.+|..+|.
T Consensus 213 --p~qt~qil~~htdEVWfl~FS~nGky-LAsaSkD~Taiiw~v~~d~~~kl----------------~~tlvgh~~~V~ 273 (519)
T KOG0293|consen 213 --PSQTWQILQDHTDEVWFLQFSHNGKY-LASASKDSTAIIWIVVYDVHFKL----------------KKTLVGHSQPVS 273 (519)
T ss_pred --CchhhhhHhhCCCcEEEEEEcCCCee-EeeccCCceEEEEEEecCcceee----------------eeeeecccCceE
Confidence 23344678889999999999999996 99999999999999876544211 122889999999
Q ss_pred EEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEE
Q 001352 402 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 481 (1093)
Q Consensus 402 ~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~ 481 (1093)
.+.||||.+||++|+.+..+.+||+.+|....... .+|...+.+++|.|||. .+++|+.|++|..||+ .|..+..
T Consensus 274 yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~--~~V~Gs~dr~i~~wdl-Dgn~~~~ 348 (519)
T KOG0293|consen 274 YIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGF--RFVTGSPDRTIIMWDL-DGNILGN 348 (519)
T ss_pred EEEECCCCCeEEecCchHheeeccCCcchhhhhcc--cCcCCCcceeEEccCCc--eeEecCCCCcEEEecC-Ccchhhc
Confidence 99999999999999999999999999998766432 24668999999999999 7999999999999995 4555666
Q ss_pred eecCC-CCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001352 482 FEGHG-APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 560 (1093)
Q Consensus 482 ~~~h~-~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~i 560 (1093)
.++-. ..|.++++ +.||+++++.+.|..|++++.++...+. +.....+|++++.|.|++++++.-. +..+.+
T Consensus 349 W~gvr~~~v~dlai--t~Dgk~vl~v~~d~~i~l~~~e~~~dr~-lise~~~its~~iS~d~k~~LvnL~----~qei~L 421 (519)
T KOG0293|consen 349 WEGVRDPKVHDLAI--TYDGKYVLLVTVDKKIRLYNREARVDRG-LISEEQPITSFSISKDGKLALVNLQ----DQEIHL 421 (519)
T ss_pred ccccccceeEEEEE--cCCCcEEEEEecccceeeechhhhhhhc-cccccCceeEEEEcCCCcEEEEEcc----cCeeEE
Confidence 65543 55888888 5688999999999999999988765553 3334568999999999999998765 455999
Q ss_pred EeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEec-CCCEEE
Q 001352 561 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLA 639 (1093)
Q Consensus 561 wd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~ 639 (1093)
||++....++.+.||.+....|.++.-..+..++++|++|+.|+||+..+|+++..+.+|.. .|++|+|+| +..++|
T Consensus 422 WDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~--~vNcVswNP~~p~m~A 499 (519)
T KOG0293|consen 422 WDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK--TVNCVSWNPADPEMFA 499 (519)
T ss_pred eecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc--eeeEEecCCCCHHHhh
Confidence 99999999999999986656666665556668999999999999999999999999998864 599999999 667899
Q ss_pred EEECCCeEEEEEcCC
Q 001352 640 VIANENRIKILETPE 654 (1093)
Q Consensus 640 ~~~~dg~i~iw~~~~ 654 (1093)
++++||+|+||....
T Consensus 500 SasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 500 SASDDGTIRIWGPSD 514 (519)
T ss_pred ccCCCCeEEEecCCc
Confidence 999999999998764
No 2
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.8e-62 Score=466.36 Aligned_cols=491 Identities=18% Similarity=0.281 Sum_probs=399.2
Q ss_pred hHHHHHHHHHhhhhcChHHHHHHHHHhcCCChh----HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHHHhhh
Q 001352 5 NKDLVFLILQFLNEEGFTESAHMLERESRFYFD----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQN 80 (1093)
Q Consensus 5 ~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~~~----~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ 80 (1093)
..||||||+|||+|+.+++++++||+|+++++| +..|-+.|.+|+||.++..+++| +++.+-+..||||.
T Consensus 7 ssdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL------KLP~kkL~dLYEqi 80 (508)
T KOG0275|consen 7 SSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL------KLPDKKLIDLYEQI 80 (508)
T ss_pred cchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc------cCchhHHHHHHHHH
Confidence 468999999999999999999999999999998 89999999999999999999998 44455678899999
Q ss_pred hhhhccCCCHHHHHHHHHhh--ccccCCCCHHHHHHHHHhhcccCcccccccccccCCChHHHHHHHHHHHhhcccCccc
Q 001352 81 FFEALDGHDIAKALNILKKD--LKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPIL 158 (1093)
Q Consensus 81 ~lEll~~~~~~~A~~~l~~~--l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~R~~l~~~l~~~~~~~~~~ 158 (1093)
.|||+|.++...|..+||+. ..-+++.+|++|-+|+.|+..+.++.++.+. +..++.|+..+. +.++.++-
T Consensus 81 vlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~---dssKEkrRa~IA---Q~ls~EV~- 153 (508)
T KOG0275|consen 81 VLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYG---DSSKEKRRAVIA---QALSGEVH- 153 (508)
T ss_pred HHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcC---cchHHHHHHHHH---HHhcCceE-
Confidence 99999999999999999984 3445566899999999999999999887743 356677665443 23333222
Q ss_pred ccccCCCCCcchHHHHHHHHhHHhhhhcCCCCCCCCCCCCcceecccCCCCCCCcCCCCCCCCCCCCCCCCCCcccccCC
Q 001352 159 QGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSS 238 (1093)
Q Consensus 159 ~~~~~~~~~p~~rL~~ll~qa~~~q~~~c~~~~~~~~~~sl~~d~~c~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 238 (1093)
.+||+||+.||+||++||+++.+.|. +- .++ .|++..
T Consensus 154 -------VVppSRLlaLlGQaLKWQqHQGLLPP---------------------------Gt--~iD------LFRGkA- 190 (508)
T KOG0275|consen 154 -------VVPPSRLLALLGQALKWQQHQGLLPP---------------------------GT--TID------LFRGKA- 190 (508)
T ss_pred -------EcChHHHHHHHHHHhhhHhhcCCCCC---------------------------Cc--eee------eccchh-
Confidence 28999999999999999999865542 10 000 011000
Q ss_pred cccCcccccccccCCCCCcccccccCCCCCCCcccCCCcccccccCCCcceecCcCCCCcCCCCCCcccccccccccCCC
Q 001352 239 MLTDSAVSFVALSLSDPTNKVAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGET 318 (1093)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~fsP~~s~~~~~~~~~~~~ 318 (1093)
+. . ...|-+||.+.
T Consensus 191 ---------------------A~---------K------------~~~Ee~~Pt~l------------------------ 204 (508)
T KOG0275|consen 191 ---------------------AM---------K------------DQEEERYPTQL------------------------ 204 (508)
T ss_pred ---------------------hh---------h------------hhHhhhchHHh------------------------
Confidence 00 0 00111234333
Q ss_pred ccCCchHHHHHhhc-cCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCC
Q 001352 319 SFSDFPKTVAQTLI-EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG 397 (1093)
Q Consensus 319 ~~~~~p~~~~~~l~-~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 397 (1093)
.+.+. |.+..+.|..|||||+| |++|+.||-|.+||..+|+......++.-|- +--+.
T Consensus 205 ---------~r~IKFg~KSh~EcA~FSPDgqy-LvsgSvDGFiEVWny~~GKlrKDLkYQAqd~-----------fMMmd 263 (508)
T KOG0275|consen 205 ---------ARSIKFGQKSHVECARFSPDGQY-LVSGSVDGFIEVWNYTTGKLRKDLKYQAQDN-----------FMMMD 263 (508)
T ss_pred ---------hhheecccccchhheeeCCCCce-Eeeccccceeeeehhccchhhhhhhhhhhcc-----------eeecc
Confidence 33333 55668999999999996 9999999999999999999877544432110 33478
Q ss_pred CCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCc
Q 001352 398 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 477 (1093)
Q Consensus 398 ~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~ 477 (1093)
.+|.|+.||.|...||+|+.||.|+||.+.+|.+++.+. +.|+..|+|+.||.|+. -+++++.|.+++|.-+.+|+
T Consensus 264 ~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd--rAHtkGvt~l~FSrD~S--qiLS~sfD~tvRiHGlKSGK 339 (508)
T KOG0275|consen 264 DAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD--RAHTKGVTCLSFSRDNS--QILSASFDQTVRIHGLKSGK 339 (508)
T ss_pred cceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhh--hhhccCeeEEEEccCcc--hhhcccccceEEEeccccch
Confidence 999999999999999999999999999999999998532 28999999999999999 58999999999999999999
Q ss_pred eeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC--CceEEEEEccC-CCEEEEEecCCCC
Q 001352 478 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG--LGCTRMAYSAN-GRRLFSCGTSKEG 554 (1093)
Q Consensus 478 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~~v~~~~~s~d-~~~l~~~~~~~~~ 554 (1093)
+++.++||...|+...| .+||..+++++.||+|++|+..+.++..++...+ .+|.++..-|. ...+++|..
T Consensus 340 ~LKEfrGHsSyvn~a~f--t~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNr---- 413 (508)
T KOG0275|consen 340 CLKEFRGHSSYVNEATF--TDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNR---- 413 (508)
T ss_pred hHHHhcCccccccceEE--cCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcC----
Confidence 99999999999999998 5688999999999999999999999888776544 36777777664 467777765
Q ss_pred ceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecC
Q 001352 555 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 634 (1093)
Q Consensus 555 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 634 (1093)
.+.|++.++. |+.++.+.......+...+++.+|.|.++++.++|+.++.|...+|++..++..+.. .+..++-+|.
T Consensus 414 sntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk--dvIGl~HHPH 490 (508)
T KOG0275|consen 414 SNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK--DVIGLTHHPH 490 (508)
T ss_pred CCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccc--cccccccCcc
Confidence 5568998864 778888876655567788889999999999999999999999999999999988755 4788999999
Q ss_pred CCEEEEEECCCeEEEEE
Q 001352 635 GTLLAVIANENRIKILE 651 (1093)
Q Consensus 635 ~~~l~~~~~dg~i~iw~ 651 (1093)
.+.+|+-+.||.+++|.
T Consensus 491 qNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 491 QNLLASYSEDGLLKLWK 507 (508)
T ss_pred cchhhhhcccchhhhcC
Confidence 99999999999999995
No 3
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.7e-59 Score=496.02 Aligned_cols=577 Identities=19% Similarity=0.258 Sum_probs=493.0
Q ss_pred eeecCCCceEEEEEccCCcEEEEecCCCcee-EEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcCC
Q 001352 341 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL-FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH 419 (1093)
Q Consensus 341 ~~~spdg~~llasg~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d~ 419 (1093)
++||++|+ +|++... ..|.+-|+.++... ... -......+++++.+||+++|++++..+
T Consensus 25 ~~~s~nG~-~L~t~~~-d~Vi~idv~t~~~~l~s~------------------~~ed~d~ita~~l~~d~~~L~~a~rs~ 84 (775)
T KOG0319|consen 25 VAWSSNGQ-HLYTACG-DRVIIIDVATGSIALPSG------------------SNEDEDEITALALTPDEEVLVTASRSQ 84 (775)
T ss_pred eeECCCCC-EEEEecC-ceEEEEEccCCceecccC------------------CccchhhhheeeecCCccEEEEeeccc
Confidence 99999999 4777543 45999999999873 210 223567899999999999999999999
Q ss_pred EEEEEEccCCCcccceEEecc-ccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccC
Q 001352 420 IVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 498 (1093)
Q Consensus 420 ~i~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 498 (1093)
.+++|++.+|+.++ .++. |++||.-++|+|.+. ++++|+.|+.++|||+..+.+.+.|+||.+.|.++.|+|..
T Consensus 85 llrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~ 159 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW 159 (775)
T ss_pred eEEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence 99999999998877 4555 999999999999997 89999999999999999999999999999999999999998
Q ss_pred CccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccc
Q 001352 499 NIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 577 (1093)
Q Consensus 499 ~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~ 577 (1093)
+...|++|..|+++++||+..... ......|.+.|++++|++|+..+++++. +..+.+||+.+.+..+++...+
T Consensus 160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~R----Dkvi~vwd~~~~~~l~~lp~ye- 234 (775)
T KOG0319|consen 160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGR----DKVIIVWDLVQYKKLKTLPLYE- 234 (775)
T ss_pred chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEecc----CcEEEEeehhhhhhhheechhh-
Confidence 888999999999999999996555 6678889999999999999999999987 7789999998877777776544
Q ss_pred cCCCeEEEEEcCC-----CCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEc
Q 001352 578 QHNSVSVVHFDTA-----KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 652 (1093)
Q Consensus 578 ~~~~v~~v~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 652 (1093)
.+.++.+-++ +.+++++|.+|.+++||.++++++....... .+.+..+...+....++..+.+..+.++|.
T Consensus 235 ---~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~-~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~ 310 (775)
T KOG0319|consen 235 ---SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSD-SEEIDHLLAIESMSQLLLVTAEQNLFLYDE 310 (775)
T ss_pred ---heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCC-chhhhcceeccccCceEEEEccceEEEEEc
Confidence 6777777777 6799999999999999999998876655443 233666666666666777788899999999
Q ss_pred CCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCcc
Q 001352 653 PESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSK 732 (1093)
Q Consensus 653 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~ 732 (1093)
.+.+....+-|..+.|..+.|- .|+.++++.++..+.+|+++... ..|. .+ .
T Consensus 311 ~~l~i~k~ivG~ndEI~Dm~~l---------------------G~e~~~laVATNs~~lr~y~~~~---~~c~--ii--~ 362 (775)
T KOG0319|consen 311 DELTIVKQIVGYNDEILDMKFL---------------------GPEESHLAVATNSPELRLYTLPT---SYCQ--II--P 362 (775)
T ss_pred cccEEehhhcCCchhheeeeec---------------------CCccceEEEEeCCCceEEEecCC---CceE--EE--e
Confidence 9999999999999999988886 57889999999999999997553 2333 22 3
Q ss_pred ccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEc
Q 001352 733 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS 812 (1093)
Q Consensus 733 ~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 812 (1093)
+|...|.++....+|-++++++.|..+++|+++.+... . ... -...+|...|.+++++
T Consensus 363 GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~------------------~--~~~--a~~~gH~~svgava~~ 420 (775)
T KOG0319|consen 363 GHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSK------------------S--LCV--AQANGHTNSVGAVAGS 420 (775)
T ss_pred CchhheeeeeecccCcEEEEecCCceEEEEEecCCcch------------------h--hhh--hhhcccccccceeeec
Confidence 59999999998888889999999999999998432110 0 000 1112599999999998
Q ss_pred cCC-CEEEEEe-CCeEEEEEccCceeE-----E----EECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceee
Q 001352 813 KND-AYLFSAS-GGVISLYIVMTFKTI-----L----TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS 881 (1093)
Q Consensus 813 ~dg-~~la~~~-dg~i~iwd~~~~~~~-----~----~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~ 881 (1093)
..+ .++++++ |.++++|++...+.. . +...|...|+|++++| +.+++|||+.|++.+||+++.++...
T Consensus 421 ~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~ 499 (775)
T KOG0319|consen 421 KLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLG 499 (775)
T ss_pred ccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEE
Confidence 776 5777777 799999999752211 1 2346899999999999 89999999999999999999999999
Q ss_pred ecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE-EeCCeE
Q 001352 882 KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHL 960 (1093)
Q Consensus 882 ~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i 960 (1093)
++.||...|.++.|+|..+.++|+|.|++|+||.+++ ..++++++||.. .|..+.|-.+|+.|++ ++||-+
T Consensus 500 vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~-----fSClkT~eGH~~---aVlra~F~~~~~qliS~~adGli 571 (775)
T KOG0319|consen 500 VLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIST-----FSCLKTFEGHTS---AVLRASFIRNGKQLISAGADGLI 571 (775)
T ss_pred EeeCCccceEEEEeccccceeEeccCCceEEEEEecc-----ceeeeeecCccc---eeEeeeeeeCCcEEEeccCCCcE
Confidence 9999999999999999999999999999999999999 558999999987 8999999999999999 799999
Q ss_pred EEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 001352 961 AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1011 (1093)
Q Consensus 961 ~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~ 1011 (1093)
++|++.+++|... +.+|..+|+++.-++++.+++||+.||.|.+|.=.+.
T Consensus 572 KlWnikt~eC~~t-lD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 572 KLWNIKTNECEMT-LDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred EEEeccchhhhhh-hhhccceeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence 9999999999998 6789999999999999999999999999999975554
No 4
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.7e-55 Score=466.64 Aligned_cols=584 Identities=14% Similarity=0.182 Sum_probs=472.9
Q ss_pred cCCCCCCcccccccccccCCCccCCchHHH--HHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEee
Q 001352 298 IPDYSPKSSLKKEMFQSFGETSFSDFPKTV--AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRN 375 (1093)
Q Consensus 298 ~~~fsP~~s~~~~~~~~~~~~~~~~~p~~~--~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~ 375 (1093)
-..|+|++..+.-...+... .++.-+... ...-.+-.+.+++++.+||+++ |++++..+.+++|++.+|+.++.
T Consensus 24 ~~~~s~nG~~L~t~~~d~Vi-~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~-L~~a~rs~llrv~~L~tgk~irs-- 99 (775)
T KOG0319|consen 24 PVAWSSNGQHLYTACGDRVI-IIDVATGSIALPSGSNEDEDEITALALTPDEEV-LVTASRSQLLRVWSLPTGKLIRS-- 99 (775)
T ss_pred ceeECCCCCEEEEecCceEE-EEEccCCceecccCCccchhhhheeeecCCccE-EEEeeccceEEEEEcccchHhHh--
Confidence 46777777766554443100 011111111 1122345678999999999985 88889999999999999987764
Q ss_pred eeeeecccccceeeeeeecC-CCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCC
Q 001352 376 FKVWDIGACSMLFKTALVRD-PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPC 454 (1093)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~-h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~ 454 (1093)
.+. |+.||.-++|+|.|..||+|+.|+.|+|||+..+.+.. .++||.+.|.++.|.|+-
T Consensus 100 -----------------wKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl~F~~~~ 159 (775)
T KOG0319|consen 100 -----------------WKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSLLFHPHW 159 (775)
T ss_pred -----------------HhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE---EecCCCceEEEEEeCCcc
Confidence 334 99999999999999999999999999999999986555 799999999999999998
Q ss_pred CcEEEEEEcCCCcEEEEECCCCce-eEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCce
Q 001352 455 KQISVITCGDDKTIKVWDAVTGSR-TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGC 533 (1093)
Q Consensus 455 ~~l~l~s~~~d~~i~vwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v 533 (1093)
....|++|+.|+++++||+.++.. +..+..|.+.|+++++.+ |+..+++++.|..+.+||+...+...+.+.. ..+
T Consensus 160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~--d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~y-e~~ 236 (775)
T KOG0319|consen 160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSE--DSLELLSVGRDKVIIVWDLVQYKKLKTLPLY-ESL 236 (775)
T ss_pred chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeecc--CCceEEEeccCcEEEEeehhhhhhhheechh-hhe
Confidence 766799999999999999996654 888899999999999954 5789999999999999999665555444332 245
Q ss_pred EEEEEccC-----CCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001352 534 TRMAYSAN-----GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 608 (1093)
Q Consensus 534 ~~~~~s~d-----~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~ 608 (1093)
.++.+-++ |.++++++. ++.+++||.+++++........ ...+..+...+....+++...|..+.++|.
T Consensus 237 E~vv~l~~~~~~~~~~~~TaG~----~g~~~~~d~es~~~~~~~~~~~--~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~ 310 (775)
T KOG0319|consen 237 ESVVRLREELGGKGEYIITAGG----SGVVQYWDSESGKCVYKQRQSD--SEEIDHLLAIESMSQLLLVTAEQNLFLYDE 310 (775)
T ss_pred eeEEEechhcCCcceEEEEecC----CceEEEEecccchhhhhhccCC--chhhhcceeccccCceEEEEccceEEEEEc
Confidence 56666666 668888875 7779999999998877665543 233666666667778888888999999999
Q ss_pred CCCceEEEEecCCCCCCCceEEEe-cCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCC
Q 001352 609 NKVQLLTTIDAGGGLPENPRICFN-KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG 687 (1093)
Q Consensus 609 ~~~~~~~~~~~~~~~~~v~~v~~s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 687 (1093)
++.+....+-+.. ..|..++|- |+.++|++++..+.+++|+..+..+. .+.+|.+.|.++...
T Consensus 311 ~~l~i~k~ivG~n--dEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~------------- 374 (775)
T KOG0319|consen 311 DELTIVKQIVGYN--DEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVW------------- 374 (775)
T ss_pred cccEEehhhcCCc--hhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeec-------------
Confidence 9999988887553 468888864 68899999999999999998887665 888999999887743
Q ss_pred ceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCc-eEEEeeccceeEEeeecC
Q 001352 688 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ-AIFALASNGVHLMWRWPR 766 (1093)
Q Consensus 688 ~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~-~l~~~~~dg~v~vw~~~~ 766 (1093)
..|-++++++.|+++++|.++.... .........+|.+.|.+++++..+. .+++++.|+++++|+++.
T Consensus 375 ---------~~g~llat~sKD~svilWr~~~~~~--~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~ 443 (775)
T KOG0319|consen 375 ---------SSGDLLATGSKDKSVILWRLNNNCS--KSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPK 443 (775)
T ss_pred ---------ccCcEEEEecCCceEEEEEecCCcc--hhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCC
Confidence 4567899999999999999832211 1111222357999999999987664 567888999999999987
Q ss_pred cccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCC
Q 001352 767 NDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSP 845 (1093)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~ 845 (1093)
.+.... +. ..........|...|.|++++|+.+++|+|+ |.+.+||+++.+....++.+|..
T Consensus 444 s~~~~~--------~~---------~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~R 506 (775)
T KOG0319|consen 444 SKETAF--------PI---------VLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTR 506 (775)
T ss_pred cccccc--------cc---------eehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCcc
Confidence 321100 00 1111122335999999999999999999999 79999999999999999999999
Q ss_pred CeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeee
Q 001352 846 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCR 925 (1093)
Q Consensus 846 ~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~ 925 (1093)
.+.++.|+| ..+.+||+|.|++|+||.+.+..++++|.||+..|..+.|-.+|+.|+|++.||.|++|++++++
T Consensus 507 Gvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~e----- 580 (775)
T KOG0319|consen 507 GVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNE----- 580 (775)
T ss_pred ceEEEEecc-ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchh-----
Confidence 999999999 88999999999999999999999999999999999999999999999999999999999999965
Q ss_pred eeecCCCcccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCC
Q 001352 926 SLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEE 967 (1093)
Q Consensus 926 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~ 967 (1093)
+....+.|.. .|.+++.+|++.++++ +.|+.|.+|.=.+
T Consensus 581 C~~tlD~H~D---rvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 581 CEMTLDAHND---RVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred hhhhhhhccc---eeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 7778888886 8999999999999998 6899999996443
No 5
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.9e-52 Score=427.34 Aligned_cols=575 Identities=15% Similarity=0.193 Sum_probs=462.7
Q ss_pred eeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcC
Q 001352 339 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 418 (1093)
Q Consensus 339 ~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d 418 (1093)
.-+.-.|.|+.++.+.+ ..|.+-++++...... +.+|..+++-..|||.|-|+|+|...
T Consensus 22 ~~ig~dpkgd~ilY~nG--ksv~ir~i~~~~~~~i-------------------YtEH~~~vtVAkySPsG~yiASGD~s 80 (603)
T KOG0318|consen 22 IIIGGDPKGDNILYTNG--KSVIIRNIDNPASVDI-------------------YTEHAHQVTVAKYSPSGFYIASGDVS 80 (603)
T ss_pred eEeccCCCCCeEEEeCC--CEEEEEECCCccceee-------------------eccccceeEEEEeCCCceEEeecCCc
Confidence 34556788887777644 6788888887665433 78899999999999999999999999
Q ss_pred CEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEE--cCCCcEEEEECCCCceeEEeecCCCCeEEeeecc
Q 001352 419 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC--GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 496 (1093)
Q Consensus 419 ~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~--~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~ 496 (1093)
|+|+|||....+.+.. .++..-.++|.+++|+.|+++ ++.. +.++..+++-.++|..+-.+.||...|+++.|-|
T Consensus 81 G~vRIWdtt~~~hiLK-nef~v~aG~I~Di~Wd~ds~R--I~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~Kp 157 (603)
T KOG0318|consen 81 GKVRIWDTTQKEHILK-NEFQVLAGPIKDISWDFDSKR--IAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKP 157 (603)
T ss_pred CcEEEEeccCcceeee-eeeeecccccccceeCCCCcE--EEEEecCccceeEEEEecCCCccceeeccceeEeeeeccC
Confidence 9999999987543322 256678899999999999995 4443 3444455555678999999999999999999977
Q ss_pred cCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeeccc
Q 001352 497 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 576 (1093)
Q Consensus 497 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 576 (1093)
+.. -.+++|+.|++|.+|+=...+-...+..|..-|.++.|+|||.++++++. |+.+++||-.+|+.+..+....
T Consensus 158 sRP-fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs----Dgki~iyDGktge~vg~l~~~~ 232 (603)
T KOG0318|consen 158 SRP-FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS----DGKIYIYDGKTGEKVGELEDSD 232 (603)
T ss_pred CCc-eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC----CccEEEEcCCCccEEEEecCCC
Confidence 644 57999999999999987766677778888889999999999999999987 6779999999999999999655
Q ss_pred ccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCC-CceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001352 577 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE-NPRICFNKNGTLLAVIANENRIKILETPES 655 (1093)
Q Consensus 577 ~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 655 (1093)
.|.+.|.+++|+||+.++++++.|.+++|||+.+.+++.++........ ...+.|. +..|++.+.+|.|.+++....
T Consensus 233 aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~ 310 (603)
T KOG0318|consen 233 AHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDP 310 (603)
T ss_pred CccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCC
Confidence 5669999999999999999999999999999999999999987654211 1233444 668999999999999999999
Q ss_pred ceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccc
Q 001352 656 NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKA 735 (1093)
Q Consensus 656 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~ 735 (1093)
..+..+.+|...|++++.+ +|++++++++.||.|.-|+...+.... +....|.
T Consensus 311 ~~~~~i~GHnK~ITaLtv~----------------------~d~~~i~SgsyDG~I~~W~~~~g~~~~-----~~g~~h~ 363 (603)
T KOG0318|consen 311 SVLKVISGHNKSITALTVS----------------------PDGKTIYSGSYDGHINSWDSGSGTSDR-----LAGKGHT 363 (603)
T ss_pred ChhheecccccceeEEEEc----------------------CCCCEEEeeccCceEEEEecCCccccc-----ccccccc
Confidence 9999999999999999996 788999999999999999987554332 3334589
Q ss_pred cceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCC
Q 001352 736 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 815 (1093)
Q Consensus 736 ~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg 815 (1093)
..|.+++.+..+. +++.+.|.++++.++..+...... . .+ -.....+++..+|+
T Consensus 364 nqI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t~~~------------------~--~~-----lg~QP~~lav~~d~ 417 (603)
T KOG0318|consen 364 NQIKGMAASESGE-LFTIGWDDTLRVISLKDNGYTKSE------------------V--VK-----LGSQPKGLAVLSDG 417 (603)
T ss_pred ceEEEEeecCCCc-EEEEecCCeEEEEecccCcccccc------------------e--ee-----cCCCceeEEEcCCC
Confidence 9999999988776 788888889988776443221100 0 11 12233488999999
Q ss_pred CEEEEEeCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcce--eeecccccCCeEEE
Q 001352 816 AYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--ISKLEGHSKRVTGL 893 (1093)
Q Consensus 816 ~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~--~~~l~~h~~~V~~l 893 (1093)
.+++.+.++.|.+..-.++ +.... ..-...++|++| ++..+|+|+.||.|+||.+..+.. ...+..|.++|+++
T Consensus 418 ~~avv~~~~~iv~l~~~~~--~~~~~-~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~v 493 (603)
T KOG0318|consen 418 GTAVVACISDIVLLQDQTK--VSSIP-IGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDV 493 (603)
T ss_pred CEEEEEecCcEEEEecCCc--ceeec-cccccceEEEcC-CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEE
Confidence 8888888766666653222 22222 345678999999 999999999999999999987653 34566799999999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcceee
Q 001352 894 VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLK 972 (1093)
Q Consensus 894 ~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~ 972 (1093)
++|||+.+||++...+.+.+||+.+.+.... ...-|. ..|.+++|||+.+++|+ +-|..|.||++.......
T Consensus 494 aySpd~~yla~~Da~rkvv~yd~~s~~~~~~----~w~FHt---akI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i 566 (603)
T KOG0318|consen 494 AYSPDGAYLAAGDASRKVVLYDVASREVKTN----RWAFHT---AKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHI 566 (603)
T ss_pred EECCCCcEEEEeccCCcEEEEEcccCceecc----eeeeee---eeEEEEEeCCCceEEEeccccceEEEEEccChhhhe
Confidence 9999999999999999999999999764221 111233 37999999999999999 579999999999877666
Q ss_pred eeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 001352 973 QWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1009 (1093)
Q Consensus 973 ~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~ 1009 (1093)
....+|...|+.+.|- |...|++.+.|..|++|++.
T Consensus 567 ~iknAH~~gVn~v~wl-de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 567 IIKNAHLGGVNSVAWL-DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred EeccccccCceeEEEe-cCceEEeccCcceeEEeccc
Confidence 6678898889999997 45678899999999999875
No 6
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.1e-50 Score=427.85 Aligned_cols=591 Identities=17% Similarity=0.209 Sum_probs=455.4
Q ss_pred CcCCCC-cCCCCCCcc-cccccccccCCCccCCchHHHHHhhc-cCCCCceeeeecCCCceEEEEEccCCcEEEEecCCC
Q 001352 292 GVSLKN-IPDYSPKSS-LKKEMFQSFGETSFSDFPKTVAQTLI-EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG 368 (1093)
Q Consensus 292 ~~~~~~-~~~fsP~~s-~~~~~~~~~~~~~~~~~p~~~~~~l~-~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~ 368 (1093)
+.+|.. .+.|+|++. .+... .+...+.++.+....||. .+...|++++.||+|. +|++....|...+-+....
T Consensus 12 GTvyr~Gnl~ft~dG~sviSPv---GNrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~-lllavdE~g~~~lvs~~~r 87 (893)
T KOG0291|consen 12 GTVYRAGNLVFTKDGNSVISPV---GNRVSVFDLKNNKSYTLPLETRYNITRIALSPDGT-LLLAVDERGRALLVSLLSR 87 (893)
T ss_pred cceeecCcEEECCCCCEEEecc---CCEEEEEEccCCcceeEEeecCCceEEEEeCCCce-EEEEEcCCCcEEEEecccc
Confidence 344433 567777733 22211 112233333344444544 4566999999999998 5666678899999999888
Q ss_pred ceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCc-----ccceEEeccccc
Q 001352 369 QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD-----ARQQLEIDAHVG 443 (1093)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~-----~~~~~~~~~h~~ 443 (1093)
..++.++| +.+|.|+.|||||+++|+|..+ .+.||....... .....++.+|-.
T Consensus 88 ~Vlh~f~f--------------------k~~v~~i~fSPng~~fav~~gn-~lqiw~~P~~~~~~~~pFvl~r~~~g~fd 146 (893)
T KOG0291|consen 88 SVLHRFNF--------------------KRGVGAIKFSPNGKFFAVGCGN-LLQIWHAPGEIKNEFNPFVLHRTYLGHFD 146 (893)
T ss_pred eeeEEEee--------------------cCccceEEECCCCcEEEEEecc-eeEEEecCcchhcccCcceEeeeecCCcc
Confidence 88876554 4789999999999999998654 599998764322 233446779999
Q ss_pred cEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCce--eEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCC--
Q 001352 444 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR--TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-- 519 (1093)
Q Consensus 444 ~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~-- 519 (1093)
.|.++.|+.|.+ ++++|+.|.++++|+++..+- .+.+.+|...|..+-| ..|...+++.+.||.+.+|....
T Consensus 147 di~si~Ws~DSr--~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF--~~~~~~l~tvskdG~l~~W~~~~~P 222 (893)
T KOG0291|consen 147 DITSIDWSDDSR--LLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFF--GANSLDLYTVSKDGALFVWTCDLRP 222 (893)
T ss_pred ceeEEEeccCCc--eEEeccccceEEEEEeccccccceEeccCCCcceEEEEe--ccCcceEEEEecCceEEEEEecCCC
Confidence 999999999999 899999999999999987666 5678899999998877 44557899999999999997761
Q ss_pred ---------------------CCc-----------eEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001352 520 ---------------------LGA-----------RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 567 (1093)
Q Consensus 520 ---------------------~~~-----------~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~ 567 (1093)
++. ...+......+++.+|++..+.|+++-. .+...+|++....
T Consensus 223 ~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFs----sG~f~LyelP~f~ 298 (893)
T KOG0291|consen 223 PELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFS----SGEFGLYELPDFN 298 (893)
T ss_pred cccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEec----CCeeEEEecCCce
Confidence 111 0111223357899999999999999876 4458899999999
Q ss_pred eeeeeecccccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCe
Q 001352 568 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 646 (1093)
Q Consensus 568 ~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 646 (1093)
+++.+.-.. .+|..++|+..|.+++.|+ .-|.+.||+..+..-+....+| ...+.+++++|||+++|+|++||.
T Consensus 299 lih~LSis~---~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH--~~~i~~l~YSpDgq~iaTG~eDgK 373 (893)
T KOG0291|consen 299 LIHSLSISD---QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGH--SDRITSLAYSPDGQLIATGAEDGK 373 (893)
T ss_pred EEEEeeccc---ceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecccc--ccceeeEEECCCCcEEEeccCCCc
Confidence 998888765 7899999999999999966 5589999999887776665544 567999999999999999999999
Q ss_pred EEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccc
Q 001352 647 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 726 (1093)
Q Consensus 647 i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~ 726 (1093)
|+|||..++-++.++..
T Consensus 374 VKvWn~~SgfC~vTFte--------------------------------------------------------------- 390 (893)
T KOG0291|consen 374 VKVWNTQSGFCFVTFTE--------------------------------------------------------------- 390 (893)
T ss_pred EEEEeccCceEEEEecc---------------------------------------------------------------
Confidence 99999998877766654
Q ss_pred cccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCe
Q 001352 727 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 806 (1093)
Q Consensus 727 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 806 (1093)
|.+.|+.+.|+..|+.+++.+-||+|+.||+... .+..++..| .....
T Consensus 391 -------Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY----------------------rNfRTft~P---~p~Qf 438 (893)
T KOG0291|consen 391 -------HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY----------------------RNFRTFTSP---EPIQF 438 (893)
T ss_pred -------CCCceEEEEEEecCCEEEEeecCCeEEeeeeccc----------------------ceeeeecCC---Cceee
Confidence 5566777777888888888888888888876432 223333332 45567
Q ss_pred eEEEEccCCCEEEEEe-C-CeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc-ceeeec
Q 001352 807 PCFALSKNDAYLFSAS-G-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVISKL 883 (1093)
Q Consensus 807 ~~l~~s~dg~~la~~~-d-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~-~~~~~l 883 (1093)
.|++..|.|.+++.|+ | =.|.+|++++|+.+..+.+|.++|.+++|+| ++..||+|+.|.+|++||+-.. ..+.++
T Consensus 439 scvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEtl 517 (893)
T KOG0291|consen 439 SCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGTVETL 517 (893)
T ss_pred eEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEEeeccCceeeeE
Confidence 8999999999999988 4 4599999999999999999999999999999 8999999999999999998654 344555
Q ss_pred ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeee----------eee--ecCCCcccCCCCceEEEEccCCCE
Q 001352 884 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC----------RSL--QTPDGVMTLAPSETHIQFHKDQTR 951 (1093)
Q Consensus 884 ~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~----------~~~--~~~~~~~~~~~~v~~~~~s~dg~~ 951 (1093)
+ +...+..++|+|||+.|+++.-||.|.+||...+..... +.. .....+.......+.+++|+||..
T Consensus 518 ~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~ 596 (893)
T KOG0291|consen 518 E-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKC 596 (893)
T ss_pred e-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCE
Confidence 5 777899999999999999999999999999986543310 000 000111122257899999999999
Q ss_pred EEE-EeCCeEEEEEcCCcceeeeeecC----------------------------------------------------C
Q 001352 952 FLL-VHETHLAIYEAEELTCLKQWFPI----------------------------------------------------S 978 (1093)
Q Consensus 952 l~~-~~d~~i~vwd~~~~~~~~~~~~~----------------------------------------------------h 978 (1093)
+++ |..+.|++|++.++..++.+... +
T Consensus 597 IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr 676 (893)
T KOG0291|consen 597 ILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRR 676 (893)
T ss_pred EEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccc
Confidence 998 67789999999887665543211 0
Q ss_pred ---CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEec
Q 001352 979 ---SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1018 (1093)
Q Consensus 979 ---~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~ 1018 (1093)
.-+|.++.|||.|+-++.++..| +.||.+++.-....+.
T Consensus 677 ~rpeIrv~sv~fsPtgraFAaatTEG-l~IYsld~~~~FDPf~ 718 (893)
T KOG0291|consen 677 FRPEIRVTSVQFSPTGRAFAAATTEG-LLIYSLDTTILFDPFD 718 (893)
T ss_pred cCceEEEEEEEECCCcCeeeeecccc-eEEEecCCceEEcccc
Confidence 12578899999999999999987 8899998876654443
No 7
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=6.5e-50 Score=408.85 Aligned_cols=541 Identities=12% Similarity=0.199 Sum_probs=433.2
Q ss_pred HHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC
Q 001352 328 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 407 (1093)
Q Consensus 328 ~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~ 407 (1093)
...+.+|...++-+.|||.|- ++|+|...|.|+|||....+.+...+|+ .-.++|..++|++
T Consensus 52 ~~iYtEH~~~vtVAkySPsG~-yiASGD~sG~vRIWdtt~~~hiLKnef~-----------------v~aG~I~Di~Wd~ 113 (603)
T KOG0318|consen 52 VDIYTEHAHQVTVAKYSPSGF-YIASGDVSGKVRIWDTTQKEHILKNEFQ-----------------VLAGPIKDISWDF 113 (603)
T ss_pred eeeeccccceeEEEEeCCCce-EEeecCCcCcEEEEeccCcceeeeeeee-----------------ecccccccceeCC
Confidence 345678999999999999997 4999999999999999886666544433 3568999999999
Q ss_pred CCCEEEEEEcC--CEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecC
Q 001352 408 DGSLLGVAYSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 485 (1093)
Q Consensus 408 dg~~las~~~d--~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h 485 (1093)
|+++|++.+.. +-.+++-+++|..+. ++.||...|++++|-|.... .++||+.|++|.+|+-.--+...++..|
T Consensus 114 ds~RI~avGEGrerfg~~F~~DSG~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v~ffeGPPFKFk~s~r~H 189 (603)
T KOG0318|consen 114 DSKRIAAVGEGRERFGHVFLWDSGNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNTVAFFEGPPFKFKSSFREH 189 (603)
T ss_pred CCcEEEEEecCccceeEEEEecCCCccc---eeeccceeEeeeeccCCCce-EEEeccCCCeEEEeeCCCeeeeeccccc
Confidence 99999887543 334444444554444 78899999999999998765 8999999999999986666777888899
Q ss_pred CCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEec---CCCCceEEEEEccCCCEEEEEecCCCCceeEEEEe
Q 001352 486 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD---APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 562 (1093)
Q Consensus 486 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd 562 (1093)
...|+++.|+| ||.++++++.||.+.+||=.+++....+. .|.+.|.+++|+||+..+++++. +..+++||
T Consensus 190 skFV~~VRysP--DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa----Dkt~KIWd 263 (603)
T KOG0318|consen 190 SKFVNCVRYSP--DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA----DKTIKIWD 263 (603)
T ss_pred ccceeeEEECC--CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC----CceEEEEE
Confidence 99999999955 68899999999999999999999988887 78899999999999999999987 66799999
Q ss_pred CCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEE
Q 001352 563 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 642 (1093)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 642 (1093)
+.+.++++++.....-.+....+.|. +..|++.+.+|+|.+++...+..+..+.+|. ..|++++.+|++.+|++|+
T Consensus 264 Vs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHn--K~ITaLtv~~d~~~i~Sgs 339 (603)
T KOG0318|consen 264 VSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHN--KSITALTVSPDGKTIYSGS 339 (603)
T ss_pred eeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccc--cceeEEEEcCCCCEEEeec
Confidence 99999999987655222444455565 5689999999999999999999888888764 4699999999999999999
Q ss_pred CCCeEEEEEcCCCceeeec-ccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccC
Q 001352 643 NENRIKILETPESNSVDAA-GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARP 721 (1093)
Q Consensus 643 ~dg~i~iw~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~ 721 (1093)
.||.|.-|+..++..-... ++|...|.+++.+ +...+++.+.|.++++.++.....
T Consensus 340 yDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~-----------------------~~~~~~t~g~Dd~l~~~~~~~~~~ 396 (603)
T KOG0318|consen 340 YDGHINSWDSGSGTSDRLAGKGHTNQIKGMAAS-----------------------ESGELFTIGWDDTLRVISLKDNGY 396 (603)
T ss_pred cCceEEEEecCCccccccccccccceEEEEeec-----------------------CCCcEEEEecCCeEEEEecccCcc
Confidence 9999999999988665544 6788888777765 235577888999999987643333
Q ss_pred ccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCC
Q 001352 722 SECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSN 801 (1093)
Q Consensus 722 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1093)
.......+. ..-.+++..+++..++.+...+.+.+-+... +....
T Consensus 397 t~~~~~~lg-----~QP~~lav~~d~~~avv~~~~~iv~l~~~~~-------------------------~~~~~----- 441 (603)
T KOG0318|consen 397 TKSEVVKLG-----SQPKGLAVLSDGGTAVVACISDIVLLQDQTK-------------------------VSSIP----- 441 (603)
T ss_pred cccceeecC-----CCceeEEEcCCCCEEEEEecCcEEEEecCCc-------------------------ceeec-----
Confidence 222222211 2233788888887666666655544422111 11111
Q ss_pred CCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCcee--EEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcc
Q 001352 802 SQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 878 (1093)
Q Consensus 802 ~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~ 878 (1093)
-.....+++++|++..+|+|+ |+.|+||.+..+.. ...+..|.++|++++||| |+.+||+|...+.+.+||+.+.+
T Consensus 442 ~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySp-d~~yla~~Da~rkvv~yd~~s~~ 520 (603)
T KOG0318|consen 442 IGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSP-DGAYLAAGDASRKVVLYDVASRE 520 (603)
T ss_pred cccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECC-CCcEEEEeccCCcEEEEEcccCc
Confidence 345677999999999999998 79999999987553 334567999999999999 99999999999999999999987
Q ss_pred eeee-cccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeC
Q 001352 879 VISK-LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 957 (1093)
Q Consensus 879 ~~~~-l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d 957 (1093)
.... +.-|+++|.|++|||+.+++|||+-|-.|.||+++... ..+.....|.. .|+.+.|-.+...+-+|.|
T Consensus 521 ~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~----~~i~iknAH~~---gVn~v~wlde~tvvSsG~D 593 (603)
T KOG0318|consen 521 VKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPA----KHIIIKNAHLG---GVNSVAWLDESTVVSSGQD 593 (603)
T ss_pred eecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChh----hheEecccccc---CceeEEEecCceEEeccCc
Confidence 6433 33499999999999999999999999999999998743 22444555554 5999999999888888999
Q ss_pred CeEEEEEcC
Q 001352 958 THLAIYEAE 966 (1093)
Q Consensus 958 ~~i~vwd~~ 966 (1093)
..|++|++.
T Consensus 594 a~iK~W~v~ 602 (603)
T KOG0318|consen 594 ANIKVWNVT 602 (603)
T ss_pred ceeEEeccc
Confidence 999999864
No 8
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4e-49 Score=419.44 Aligned_cols=573 Identities=15% Similarity=0.211 Sum_probs=460.7
Q ss_pred EEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEE
Q 001352 402 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 481 (1093)
Q Consensus 402 ~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~ 481 (1093)
.+.|++||..+++-..+ .|.++|+...+.... .-.+...|++++.||+|. ++++....|.+.+-++.....++.
T Consensus 19 nl~ft~dG~sviSPvGN-rvsv~dLknN~S~Tl---~~e~~~NI~~ialSp~g~--lllavdE~g~~~lvs~~~r~Vlh~ 92 (893)
T KOG0291|consen 19 NLVFTKDGNSVISPVGN-RVSVFDLKNNKSYTL---PLETRYNITRIALSPDGT--LLLAVDERGRALLVSLLSRSVLHR 92 (893)
T ss_pred cEEECCCCCEEEeccCC-EEEEEEccCCcceeE---EeecCCceEEEEeCCCce--EEEEEcCCCcEEEEecccceeeEE
Confidence 48899999999987655 499999998764332 224778899999999999 889999999999999988888888
Q ss_pred eecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCC--------ceEEecCCCCceEEEEEccCCCEEEEEecCCC
Q 001352 482 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--------ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 553 (1093)
Q Consensus 482 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--------~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~ 553 (1093)
+. ...+|.+++|+| ||.+++. +..+.+.+|...... ...++.+|-..+.++.|+.|.+++++++.
T Consensus 93 f~-fk~~v~~i~fSP--ng~~fav-~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsr--- 165 (893)
T KOG0291|consen 93 FN-FKRGVGAIKFSP--NGKFFAV-GCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSR--- 165 (893)
T ss_pred Ee-ecCccceEEECC--CCcEEEE-EecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccc---
Confidence 76 678899999955 6655555 456789999764322 23356777889999999999999999986
Q ss_pred CceeEEEEeCCCCee--eeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---------------------
Q 001352 554 GESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--------------------- 610 (1093)
Q Consensus 554 ~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~--------------------- 610 (1093)
|..+++|+++..+- ...+.+|. +.|.++.|..+...+++.+.||.+.+|....
T Consensus 166 -D~s~rl~~v~~~k~~~~~~l~gHk---d~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~ 241 (893)
T KOG0291|consen 166 -DLSARLFGVDGNKNLFTYALNGHK---DYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMD 241 (893)
T ss_pred -cceEEEEEeccccccceEeccCCC---cceEEEEeccCcceEEEEecCceEEEEEecCCCccccccccccccccccccc
Confidence 77799999887665 55667777 9999999999999999999999999998761
Q ss_pred --Cce-----E----EEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCce
Q 001352 611 --VQL-----L----TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 679 (1093)
Q Consensus 611 --~~~-----~----~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 679 (1093)
++. . ...-.......+++.+|++..+.|+++-..|.+.+|++..-..+..+.....+|..++++..
T Consensus 242 ~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~t--- 318 (893)
T KOG0291|consen 242 EDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNST--- 318 (893)
T ss_pred ccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEeccc---
Confidence 111 0 01111112246889999999999999999999999999999999999988888988888744
Q ss_pred eeeeccCCceEecCCCCCCCccceeeccc-ccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccce
Q 001352 680 TGAGIANGSVSVNEDPKEDVKPEISVEAE-NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGV 758 (1093)
Q Consensus 680 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d-~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~ 758 (1093)
|.+++.|+.. |.+-+|+.+. ..+.+..++|...+.+++++|||+++++|+.||.
T Consensus 319 -------------------GDWiA~g~~klgQLlVweWqs------EsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgK 373 (893)
T KOG0291|consen 319 -------------------GDWIAFGCSKLGQLLVWEWQS------ESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGK 373 (893)
T ss_pred -------------------CCEEEEcCCccceEEEEEeec------cceeeeccccccceeeEEECCCCcEEEeccCCCc
Confidence 4455544433 7888898653 3455566779999999999999999999999998
Q ss_pred eEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeE
Q 001352 759 HLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI 837 (1093)
Q Consensus 759 v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~ 837 (1093)
|+||+ ..+|.|+.++.- |...|+.+.|+.+|+.+++.+ ||+|+.||+...+..
T Consensus 374 VKvWn----------------------~~SgfC~vTFte----Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNf 427 (893)
T KOG0291|consen 374 VKVWN----------------------TQSGFCFVTFTE----HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNF 427 (893)
T ss_pred EEEEe----------------------ccCceEEEEecc----CCCceEEEEEEecCCEEEEeecCCeEEeeeeccccee
Confidence 88865 567788888764 999999999999999999998 999999999999999
Q ss_pred EEECCCCC-CeEEEEEcCCCCCEEEEEeCCC-eEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEe
Q 001352 838 LTIMPPSP-TATSLAFNPHDNNVIAIGMDDS-TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 915 (1093)
Q Consensus 838 ~~~~~~~~-~i~~l~~s~~d~~~lasg~~dg-~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd 915 (1093)
+++..+.. ...|++..| .|.++.+|+.|. .|.+|++++|+.+..+.||.++|.+++|+|++..|||+|.|++|++||
T Consensus 428 RTft~P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~ 506 (893)
T KOG0291|consen 428 RTFTSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWD 506 (893)
T ss_pred eeecCCCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEE
Confidence 99986553 678999999 899999999887 899999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcceeeeee------cC-----------
Q 001352 916 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWF------PI----------- 977 (1093)
Q Consensus 916 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~------~~----------- 977 (1093)
+-...... ..++.. ..+..++|+|||+.||+ .-||.|.+||+..+..+..+. .+
T Consensus 507 if~s~~~v-Etl~i~-------sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~ 578 (893)
T KOG0291|consen 507 IFSSSGTV-ETLEIR-------SDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAEN 578 (893)
T ss_pred eeccCcee-eeEeec-------cceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhh
Confidence 97642111 122222 14889999999999999 689999999998765543211 11
Q ss_pred --CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccc---------------------------------
Q 001352 978 --SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY--------------------------------- 1022 (1093)
Q Consensus 978 --h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~--------------------------------- 1022 (1093)
.....+.++||+||.++++||....|++|+++++.+++++..+..
T Consensus 579 sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~ 658 (893)
T KOG0291|consen 579 SAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEG 658 (893)
T ss_pred cccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccc
Confidence 156889999999999999999999999999999999887771111
Q ss_pred -----cCCCC--------CCCccceeEEEeCCCCCCEEEEEeCCCc
Q 001352 1023 -----LRPTT--------SCLHVYPHAIAAHPLKPTQFAVGLTNGE 1055 (1093)
Q Consensus 1023 -----~~~~~--------~~~~v~~~~~~~~p~d~~~l~~~~~dg~ 1055 (1093)
+|... ....|....+.|+|. |+-+|+++..|-
T Consensus 659 ~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPt-graFAaatTEGl 703 (893)
T KOG0291|consen 659 RIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPT-GRAFAAATTEGL 703 (893)
T ss_pred cccccCCccccCCccccccCceEEEEEEEECCC-cCeeeeecccce
Confidence 11110 011466788999994 888999988884
No 9
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.1e-48 Score=411.52 Aligned_cols=575 Identities=15% Similarity=0.180 Sum_probs=446.4
Q ss_pred Cceeeee-cCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEE
Q 001352 337 SPMSMDF-HPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 415 (1093)
Q Consensus 337 ~V~~~~~-spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~ 415 (1093)
++..+.. +..|+++.+ +....|.+||+.+|+...... ...-...|+|+.-+||.-+||+|
T Consensus 23 N~~~~~~~~~~Gr~va~--~a~E~vn~WdlRtge~~~~l~-----------------~~~~k~evt~l~~~~d~l~lAVG 83 (888)
T KOG0306|consen 23 NINFVVKRSGKGRAVAV--SALEQVNIWDLRTGEIEKKLI-----------------LLKKKAEVTCLRSSDDILLLAVG 83 (888)
T ss_pred ceeEEEeecCCCcEEEE--eccccEeEEeeecchhhhhhh-----------------hhcccceEEEeeccCCcceEEEE
Confidence 3444333 345875333 344689999999995543211 22344689999999999999999
Q ss_pred EcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeec
Q 001352 416 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 495 (1093)
Q Consensus 416 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~ 495 (1093)
..||.|+||+..++... .++.||...|+++.|...|. .|+|||.|+.|.+||+-...-+..+.||...|+.+-|.
T Consensus 84 YaDGsVqif~~~s~~~~---~tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~ 158 (888)
T KOG0306|consen 84 YADGSVQIFSLESEEIL---ITFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFL 158 (888)
T ss_pred ecCceEEeeccCCCcee---eeecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhcc
Confidence 99999999999987533 37889999999999999999 89999999999999999999999999999999988774
Q ss_pred ccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC---------
Q 001352 496 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG--------- 566 (1093)
Q Consensus 496 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~--------- 566 (1093)
. +..++++.+.|+.|++||+.+..+..+...|.+.+..+++.+ +.+++++. +..+.+|++...
T Consensus 159 ~--~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~----dse~~v~~L~~~~D~~~~~~~ 230 (888)
T KOG0306|consen 159 N--GDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGT----DSELKVWELAFEDDEKETNRY 230 (888)
T ss_pred C--CCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEec----CCceEEEEeeccccccccccc
Confidence 3 457999999999999999999999999999999999999988 66777665 455999988211
Q ss_pred ---eeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE-------------EE--ec---------
Q 001352 567 ---AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT-------------TI--DA--------- 619 (1093)
Q Consensus 567 ---~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-------------~~--~~--------- 619 (1093)
+...++... ..+....+...++++++++-+.|..+.++.+.+.+.+. .. ..
T Consensus 231 ~s~~~~G~~~rq--sk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~ 308 (888)
T KOG0306|consen 231 ISTKLRGTFIRQ--SKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLS 308 (888)
T ss_pred ceeeccceeeec--cCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHH
Confidence 011112111 13445566677788899999999999999886532110 00 00
Q ss_pred --------CCCCCCCceEEEecCCC---EEEEEECCCeEEEEEcCCCcee---------eecccccccceeeeecCCCce
Q 001352 620 --------GGGLPENPRICFNKNGT---LLAVIANENRIKILETPESNSV---------DAAGVLSDNLRKLSVNPISTV 679 (1093)
Q Consensus 620 --------~~~~~~v~~v~~s~~~~---~l~~~~~dg~i~iw~~~~~~~~---------~~~~~~~~~i~~~~~~~~~~~ 679 (1093)
-.....+.++.|-|.++ .|+. -.++++.+|.+...... ..+.+|...|.+++++
T Consensus 309 ~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS----- 382 (888)
T KOG0306|consen 309 DEIKRLETIRTSAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVS----- 382 (888)
T ss_pred HHHHHHHheechhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEee-----
Confidence 00112356677766443 2333 66788888887752222 3456888889888887
Q ss_pred eeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeecccee
Q 001352 680 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVH 759 (1093)
Q Consensus 680 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v 759 (1093)
.+...++++ ..+.+++|+..+....+.. ..+.+.+..|-|.+++++.|..+|.+
T Consensus 383 -----------------~d~~~~~Sg-a~~SikiWn~~t~kciRTi--------~~~y~l~~~Fvpgd~~Iv~G~k~Gel 436 (888)
T KOG0306|consen 383 -----------------SDSILLASG-AGESIKIWNRDTLKCIRTI--------TCGYILASKFVPGDRYIVLGTKNGEL 436 (888)
T ss_pred -----------------cCceeeeec-CCCcEEEEEccCcceeEEe--------ccccEEEEEecCCCceEEEeccCCce
Confidence 333334444 3478999997743322211 33478889999999999999999999
Q ss_pred EEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccC-----
Q 001352 760 LMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMT----- 833 (1093)
Q Consensus 760 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~----- 833 (1093)
.+||+..... +-+. .+|.+.+..++.+||++.+++++ |.+|++||..-
T Consensus 437 ~vfdlaS~~l----------------------~Eti----~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~ 490 (888)
T KOG0306|consen 437 QVFDLASASL----------------------VETI----RAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVP 490 (888)
T ss_pred EEEEeehhhh----------------------hhhh----hccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccC
Confidence 9999765422 1111 14999999999999999999998 89999999752
Q ss_pred ceeEEEEC-------CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEe
Q 001352 834 FKTILTIM-------PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG 906 (1093)
Q Consensus 834 ~~~~~~~~-------~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s 906 (1093)
|...+.+. .-...|.|+.+|| |+++||++--|.+|+||-+++-+..-.+.||.-||.|+..|||+++++|||
T Consensus 491 gt~~k~lsl~~~rtLel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgS 569 (888)
T KOG0306|consen 491 GTQKKVLSLKHTRTLELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGS 569 (888)
T ss_pred cccceeeeeccceEEeccccEEEEEEcC-CCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEecc
Confidence 22211111 2456899999999 999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcceeeeeecCCCCCEEEE
Q 001352 907 GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQA 985 (1093)
Q Consensus 907 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~ 985 (1093)
.|+.|+||-++-|. +.+.+.+|.. .|.++.|-|+..++.+ |.|+.|+-||....+++.. +.+|...|+++
T Consensus 570 ADKnVKiWGLdFGD-----CHKS~fAHdD---Svm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~-L~~H~~ev~cL 640 (888)
T KOG0306|consen 570 ADKNVKIWGLDFGD-----CHKSFFAHDD---SVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQK-LDGHHSEVWCL 640 (888)
T ss_pred CCCceEEeccccch-----hhhhhhcccC---ceeEEEEcccceeEEEecCcceEEeechhhhhhhee-eccchheeeee
Confidence 99999999999865 5666666665 7999999999888887 7999999999999999988 66899999999
Q ss_pred EEccCCCEEEEEeCCCcEEEEEcCCCce
Q 001352 986 TFSCDCRMVFTSFVDGTLSIHEASNLEV 1013 (1093)
Q Consensus 986 ~fs~dg~~l~t~~~dg~v~vwd~~~~~~ 1013 (1093)
+.+|+|.+++++|.|.+|++|.-....+
T Consensus 641 av~~~G~~vvs~shD~sIRlwE~tde~~ 668 (888)
T KOG0306|consen 641 AVSPNGSFVVSSSHDKSIRLWERTDEIL 668 (888)
T ss_pred EEcCCCCeEEeccCCceeEeeeccCcce
Confidence 9999999999999999999999876444
No 10
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-50 Score=397.39 Aligned_cols=333 Identities=20% Similarity=0.324 Sum_probs=304.3
Q ss_pred HHHHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEE
Q 001352 325 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 404 (1093)
Q Consensus 325 ~~~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 404 (1093)
.+|...+.||.+.|.|++|+|+|++ ||+|+.|.++++||+.|..++++ .++|...|.|++
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~~-l~tGsGD~TvR~WD~~TeTp~~t-------------------~KgH~~WVlcva 164 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGSR-LVTGSGDTTVRLWDLDTETPLFT-------------------CKGHKNWVLCVA 164 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCce-EEecCCCceEEeeccCCCCccee-------------------ecCCccEEEEEE
Confidence 5678889999999999999999996 99999999999999999988876 889999999999
Q ss_pred ECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeC-----CCCcEEEEEEcCCCcEEEEECCCCcee
Q 001352 405 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-----PCKQISVITCGDDKTIKVWDAVTGSRT 479 (1093)
Q Consensus 405 ~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-----d~~~l~l~s~~~d~~i~vwd~~~~~~~ 479 (1093)
|||||+.||+|+.||+|++||..+|+++.. .+.+|...|++++|.| ..+ +|++++.||+|+|||+..++++
T Consensus 165 wsPDgk~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd~~~~~~~ 240 (480)
T KOG0271|consen 165 WSPDGKKIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWDTKLGTCV 240 (480)
T ss_pred ECCCcchhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEEEccCceEE
Confidence 999999999999999999999999987654 6889999999999965 455 7999999999999999999999
Q ss_pred EEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEc-----------cCCC-----
Q 001352 480 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYS-----------ANGR----- 543 (1093)
Q Consensus 480 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s-----------~d~~----- 543 (1093)
..+.+|+.+|+|++|- ++ .++++|+.|++|++|+...+.....+.+|...|+.++.+ |.++
T Consensus 241 ~~lsgHT~~VTCvrwG--G~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~ 317 (480)
T KOG0271|consen 241 RTLSGHTASVTCVRWG--GE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSF 317 (480)
T ss_pred EEeccCccceEEEEEc--CC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCCh
Confidence 9999999999999983 22 499999999999999999988999999999999998877 2233
Q ss_pred --------------------EEEEEecCCCCceeEEEEeCCC-CeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCc
Q 001352 544 --------------------RLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV 602 (1093)
Q Consensus 544 --------------------~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~ 602 (1093)
.|++++. +..+.+|+... .+++....+|. ..|+.+.|+||++++++++.|..
T Consensus 318 se~~~~Al~rY~~~~~~~~erlVSgsD----d~tlflW~p~~~kkpi~rmtgHq---~lVn~V~fSPd~r~IASaSFDkS 390 (480)
T KOG0271|consen 318 SEEQKKALERYEAVLKDSGERLVSGSD----DFTLFLWNPFKSKKPITRMTGHQ---ALVNHVSFSPDGRYIASASFDKS 390 (480)
T ss_pred HHHHHHHHHHHHHhhccCcceeEEecC----CceEEEecccccccchhhhhchh---hheeeEEECCCccEEEEeecccc
Confidence 4888875 77799999764 45788888988 89999999999999999999999
Q ss_pred EEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeee
Q 001352 603 IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGA 682 (1093)
Q Consensus 603 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 682 (1093)
|++||-.+|+.+.++.+| ...|+.++|+.|.++|++++.|.++++|++.+.+....+.+|.+.|.++.++
T Consensus 391 VkLW~g~tGk~lasfRGH--v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDws-------- 460 (480)
T KOG0271|consen 391 VKLWDGRTGKFLASFRGH--VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWS-------- 460 (480)
T ss_pred eeeeeCCCcchhhhhhhc--cceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEec--------
Confidence 999999999999999866 5679999999999999999999999999999999999999999999999886
Q ss_pred eccCCceEecCCCCCCCccceeecccccceecc
Q 001352 683 GIANGSVSVNEDPKEDVKPEISVEAENKSEVEK 715 (1093)
Q Consensus 683 ~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~ 715 (1093)
|||..+++|+.|..+++|.
T Consensus 461 --------------pDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 461 --------------PDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred --------------CCCceeecCCCceEEEeec
Confidence 8899999999999999995
No 11
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.6e-50 Score=392.90 Aligned_cols=367 Identities=20% Similarity=0.290 Sum_probs=295.2
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352 393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 472 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 472 (1093)
+.||.++|.|++|+|+|++||+|+.|.++++||+.+..... +.++|...|.|++|+|||+ .|++|+.||+|++||
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLWD 185 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcc--hhhccccCCeEEEec
Confidence 77999999999999999999999999999999999975444 8899999999999999999 899999999999999
Q ss_pred CCCCcee-EEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecC
Q 001352 473 AVTGSRT-YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 551 (1093)
Q Consensus 473 ~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~ 551 (1093)
.++|+++ ..+.+|...|++++|.|- ...|..++|++++.
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~---------------------------------------hl~p~~r~las~sk- 225 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPL---------------------------------------HLVPPCRRLASSSK- 225 (480)
T ss_pred CCCCCcccccccCcccceeEEeeccc---------------------------------------ccCCCccceecccC-
Confidence 9999876 678999999999998653 23466677887765
Q ss_pred CCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEE
Q 001352 552 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 631 (1093)
Q Consensus 552 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 631 (1093)
|+.++|||+..+.++..+.+|. .+|+|+.|..+ .++++|+.|++|++|+...|.+...+.+|.+ .|+.++.
T Consensus 226 ---Dg~vrIWd~~~~~~~~~lsgHT---~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHah--wvN~lal 296 (480)
T KOG0271|consen 226 ---DGSVRIWDTKLGTCVRTLSGHT---ASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAH--WVNHLAL 296 (480)
T ss_pred ---CCCEEEEEccCceEEEEeccCc---cceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccch--heeeeec
Confidence 5568999999999999999999 99999999876 4899999999999999999999999998866 5888888
Q ss_pred ecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccc
Q 001352 632 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS 711 (1093)
Q Consensus 632 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i 711 (1093)
+-+- .|-+|..|.+=+-....+ +..+ .+......
T Consensus 297 sTdy-~LRtgaf~~t~~~~~~~s-e~~~-----------~Al~rY~~--------------------------------- 330 (480)
T KOG0271|consen 297 STDY-VLRTGAFDHTGRKPKSFS-EEQK-----------KALERYEA--------------------------------- 330 (480)
T ss_pred cchh-hhhccccccccccCCChH-HHHH-----------HHHHHHHH---------------------------------
Confidence 7542 222333222111100000 0000 00000000
Q ss_pred eecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCc
Q 001352 712 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ 791 (1093)
Q Consensus 712 ~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1093)
+.-..++++++++.|.++.+|+-...+ ++
T Consensus 331 ------------------------------~~~~~~erlVSgsDd~tlflW~p~~~k---------------------kp 359 (480)
T KOG0271|consen 331 ------------------------------VLKDSGERLVSGSDDFTLFLWNPFKSK---------------------KP 359 (480)
T ss_pred ------------------------------hhccCcceeEEecCCceEEEecccccc---------------------cc
Confidence 001123446666666666666422111 00
Q ss_pred eeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEE
Q 001352 792 FMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTIL 870 (1093)
Q Consensus 792 ~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~ 870 (1093)
+. ... +|..-|..+.||||++++|+++ |..|++|+..+|+.+..|++|-..|..++|+. |.++|++|+.|.+++
T Consensus 360 i~--rmt--gHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLK 434 (480)
T KOG0271|consen 360 IT--RMT--GHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLK 434 (480)
T ss_pred hh--hhh--chhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEEEEcCCCceEE
Confidence 11 111 4999999999999999999999 99999999999999999999999999999999 999999999999999
Q ss_pred EEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEe
Q 001352 871 IYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 915 (1093)
Q Consensus 871 iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd 915 (1093)
+|++++.++...+.||.+.|.++.|+|||+.+++++.|+.+++|.
T Consensus 435 vw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 435 VWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999999999999999999999999999999999999999999995
No 12
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.2e-47 Score=404.73 Aligned_cols=585 Identities=14% Similarity=0.151 Sum_probs=449.0
Q ss_pred CCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCC
Q 001352 408 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 487 (1093)
Q Consensus 408 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~ 487 (1093)
.|+++|+.. .-.|.+||+.+|+..+.+.. ......|+|+.-++|.- .||.|..||.|+||+..++..+.++.+|..
T Consensus 33 ~Gr~va~~a-~E~vn~WdlRtge~~~~l~~-~~~k~evt~l~~~~d~l--~lAVGYaDGsVqif~~~s~~~~~tfngHK~ 108 (888)
T KOG0306|consen 33 KGRAVAVSA-LEQVNIWDLRTGEIEKKLIL-LKKKAEVTCLRSSDDIL--LLAVGYADGSVQIFSLESEEILITFNGHKA 108 (888)
T ss_pred CCcEEEEec-cccEeEEeeecchhhhhhhh-hcccceEEEeeccCCcc--eEEEEecCceEEeeccCCCceeeeeccccc
Confidence 588877633 33499999999965554322 23446899999888877 799999999999999999999999999999
Q ss_pred CeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001352 488 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 567 (1093)
Q Consensus 488 ~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~ 567 (1093)
.|+.+.| +..|..|++||.|+.|.+||+-.......+.+|...|+.+-|..+.+++++++. |++|++||+.+..
T Consensus 109 AVt~l~f--d~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sK----Ds~iK~WdL~tqh 182 (888)
T KOG0306|consen 109 AVTTLKF--DKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSK----DSMIKFWDLETQH 182 (888)
T ss_pred ceEEEEE--cccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEecc----CceEEEEecccce
Confidence 9999999 557789999999999999999999999999999999999999998899999886 7889999999999
Q ss_pred eeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC------------ceEEEEecCCCCCCCceEEEecCC
Q 001352 568 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV------------QLLTTIDAGGGLPENPRICFNKNG 635 (1093)
Q Consensus 568 ~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~------------~~~~~~~~~~~~~~v~~v~~s~~~ 635 (1093)
+..+...|. +.+..+++.+ +.+++++.|+.+++|++... +...++...+ ......++..+++
T Consensus 183 Cf~Thvd~r---~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqs-k~R~i~l~~d~s~ 256 (888)
T KOG0306|consen 183 CFETHVDHR---GEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQS-KGREINLVTDFSD 256 (888)
T ss_pred eeeEEeccc---ceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeecc-CCceeEEeecCcc
Confidence 999988887 9999999987 78999999999999998211 1111222111 1234567777889
Q ss_pred CEEEEEECCCeEEEEEcCCCceeee--------cccccc--c-ceeeee------cCCCceeeeeccCCceEecCCCCCC
Q 001352 636 TLLAVIANENRIKILETPESNSVDA--------AGVLSD--N-LRKLSV------NPISTVTGAGIANGSVSVNEDPKED 698 (1093)
Q Consensus 636 ~~l~~~~~dg~i~iw~~~~~~~~~~--------~~~~~~--~-i~~~~~------~~~~~~~~~~~~~~~~~~~~~~s~d 698 (1093)
+++++-+.|..+.++.+.+...+.. .+.+.. . -..+.- -+... +.......++.+.+ ++.
T Consensus 257 r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~-ir~~~kiks~dv~~--~~~ 333 (888)
T KOG0306|consen 257 RFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLET-IRTSAKIKSFDVTP--SGG 333 (888)
T ss_pred cEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHh-eechhheeEEEEEe--cCC
Confidence 9999999999999999876532211 000000 0 000000 00000 00000001111111 111
Q ss_pred C-ccceeecccccceecceeeccCc---cccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcc
Q 001352 699 V-KPEISVEAENKSEVEKPLFARPS---ECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTE 774 (1093)
Q Consensus 699 ~-~~l~s~~~d~~i~~w~~~~~~~~---~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~ 774 (1093)
. +.++. -.++++..+.++..... ....-.+...+|...|.++++|.+...+++++. +.+++|
T Consensus 334 ~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiW------------ 399 (888)
T KOG0306|consen 334 TENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIW------------ 399 (888)
T ss_pred cceeEEE-eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCC-CcEEEE------------
Confidence 1 23333 55677888776652211 112222333569999999999999886555554 455555
Q ss_pred cccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEc
Q 001352 775 ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFN 853 (1093)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s 853 (1093)
+..+.+|+.++. ...+.+..|-|.++++++|. .|.+.+||+.+...+.++++|.+.|.+++.+
T Consensus 400 ----------n~~t~kciRTi~------~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~ 463 (888)
T KOG0306|consen 400 ----------NRDTLKCIRTIT------CGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLS 463 (888)
T ss_pred ----------EccCcceeEEec------cccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeec
Confidence 566677777754 34788999999999999998 5999999999999999999999999999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEcCC-----cce--e------eecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc
Q 001352 854 PHDNNVIAIGMDDSTILIYNARS-----SEV--I------SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG 920 (1093)
Q Consensus 854 ~~d~~~lasg~~dg~i~iwd~~~-----~~~--~------~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~ 920 (1093)
| |++.+++|+.|.+|++||..- |.. + ++++ -...|.|+.+||||++||.+=-|.+|+||-+++
T Consensus 464 p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDt-- 539 (888)
T KOG0306|consen 464 P-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDT-- 539 (888)
T ss_pred C-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCCCcEEEEEeccCeEEEEEecc--
Confidence 9 999999999999999999752 111 1 1122 356799999999999999999999999999998
Q ss_pred eeeeeeeecCCCcccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeC
Q 001352 921 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFV 999 (1093)
Q Consensus 921 ~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~ 999 (1093)
....-.+-||.- +|.++.+|||++++++ +.|.+|+||-++=|.|-..++ +|...|.++.|.|+..+++|+|.
T Consensus 540 ---lKFflsLYGHkL---PV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f-AHdDSvm~V~F~P~~~~FFt~gK 612 (888)
T KOG0306|consen 540 ---LKFFLSLYGHKL---PVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF-AHDDSVMSVQFLPKTHLFFTCGK 612 (888)
T ss_pred ---eeeeeeeccccc---ceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhh-cccCceeEEEEcccceeEEEecC
Confidence 445566777776 8999999999999999 689999999999999998855 79999999999999999999999
Q ss_pred CCcEEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecCC
Q 001352 1000 DGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1063 (1093)
Q Consensus 1000 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~ 1063 (1093)
|+.|+-||-...+.+..+. .|...|+ |++.+| +|.++++++.|.+|++|+-.+
T Consensus 613 D~kvKqWDg~kFe~iq~L~--------~H~~ev~--cLav~~-~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 613 DGKVKQWDGEKFEEIQKLD--------GHHSEVW--CLAVSP-NGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred cceEEeechhhhhhheeec--------cchheee--eeEEcC-CCCeEEeccCCceeEeeeccC
Confidence 9999999999988887776 3566677 556667 489999999999999999765
No 13
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2.5e-41 Score=356.42 Aligned_cols=623 Identities=14% Similarity=0.151 Sum_probs=413.3
Q ss_pred CceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEE
Q 001352 337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 416 (1093)
Q Consensus 337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~ 416 (1093)
.-..++.+|-.. ++|- -....|.+||+....+-+- +..|..+++|+|||++|+|+|+|-
T Consensus 39 ~~~gLa~~p~Sg-l~aY-pAGCvVVlfn~~~~tQ~hl-------------------vnssRk~~t~vAfS~~GryvatGE 97 (1080)
T KOG1408|consen 39 NANGLASVPCSG-LCAY-PAGCVVVLFNVDSCTQSHL-------------------VNSSRKPLTCVAFSQNGRYVATGE 97 (1080)
T ss_pred cCCccccccccc-ceee-ccCcEEEEEcccccchhhe-------------------ecccCcceeEEEEcCCCcEEEecc
Confidence 344666777655 3443 2236789999887654432 566888999999999999999984
Q ss_pred --cCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcC--CCcEEEEECCCCceeEEeecCCCCeEEe
Q 001352 417 --SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--DKTIKVWDAVTGSRTYSFEGHGAPVYSL 492 (1093)
Q Consensus 417 --~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~--d~~i~vwd~~~~~~~~~~~~h~~~v~~~ 492 (1093)
....++||++..-..+. ++..|...|+|++|+|.++ ++++.+. |-.|.+||++.......- .-...|..+
T Consensus 98 cG~~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asn-kiss~Vsav 171 (1080)
T KOG1408|consen 98 CGRTPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASN-KISSVVSAV 171 (1080)
T ss_pred cCCCccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhccccccc-ccceeEEEE
Confidence 66679999999876444 6778999999999999999 7887765 446778887654433222 134567778
Q ss_pred eecccCCccEEEEEecCCeEEEEEcCCCCceE---EecCCCCc--------eEEEEE----ccCCCEEEEEecCCCCcee
Q 001352 493 CPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGLG--------CTRMAY----SANGRRLFSCGTSKEGESF 557 (1093)
Q Consensus 493 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~~~~~--------v~~~~~----s~d~~~l~~~~~~~~~~~~ 557 (1093)
+| +.||.|+++.+ ...|++|.++...... .+.+...- ...++. ..+..+.++. .+.
T Consensus 172 ~f--sEdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~------qGh 242 (1080)
T KOG1408|consen 172 AF--SEDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITA------QGH 242 (1080)
T ss_pred EE--ccCCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEec------ccc
Confidence 88 66888888876 5689999887655211 11111100 000110 0011111111 111
Q ss_pred EEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecC-----------------
Q 001352 558 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG----------------- 620 (1093)
Q Consensus 558 i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------------- 620 (1093)
+. ...+.+++..+.... .....|++.+ .++|++|..+|.|++|+..+-..+.+++..
T Consensus 243 Lv--EFSsRRLLDKWVqcR--TTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~ 316 (1080)
T KOG1408|consen 243 LV--EFSSRRLLDKWVQCR--TTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKN 316 (1080)
T ss_pred ee--eechhhhhhhhhhhh--ccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccc
Confidence 11 112222222221111 1334566665 579999999999999998875544433211
Q ss_pred -----CCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceee---ecccccccceeeeecCCCceeeeeccCCceEec
Q 001352 621 -----GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD---AAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN 692 (1093)
Q Consensus 621 -----~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1093)
...+....+.|++....|.+...|..++|||++.-..+. .+-.|...|+.+..-|....-. ....
T Consensus 317 s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~-----~~ac-- 389 (1080)
T KOG1408|consen 317 SESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSP-----TAAC-- 389 (1080)
T ss_pred cccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCc-----cccc--
Confidence 112334567899999999999999999999998764433 3345666676665544211000 0000
Q ss_pred CCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcC
Q 001352 693 EDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLS 772 (1093)
Q Consensus 693 ~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~ 772 (1093)
-|.+- +++++.|++||+|++........... .| ++.+-..++ ..|+...+..
T Consensus 390 ---lp~~c-F~TCSsD~TIRlW~l~~ctnn~vyrR---------Ni----ls~~l~ki~--y~d~~~q~~~--------- 441 (1080)
T KOG1408|consen 390 ---LPRGC-FTTCSSDGTIRLWDLAFCTNNQVYRR---------NI----LSANLSKIP--YEDSTQQIMH--------- 441 (1080)
T ss_pred ---CCccc-eeEecCCCcEEEeecccccccceeec---------cc----chhhhhcCc--cccCchhhhh---------
Confidence 13333 78999999999999875322221100 00 111110011 1111110000
Q ss_pred cccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEE
Q 001352 773 TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLA 851 (1093)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~ 851 (1093)
....-++|-.... . ......++++++||+|++||+|. .|.++||++...+....+..|..+|.|+.
T Consensus 442 -----d~~~~~fdka~~s------~--~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLe 508 (1080)
T KOG1408|consen 442 -----DASAGIFDKALVS------T--CDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLE 508 (1080)
T ss_pred -----hccCCcccccchh------h--cCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEe
Confidence 0001111111100 0 12567899999999999999998 59999999999999999999999999999
Q ss_pred EcCC--CCCEEEEEeCCCeEEEEEcCC-cceeeecccccCCeEEEEEeCCC--CEEEEEeCCCcEEEEeCCCCceeeeee
Q 001352 852 FNPH--DNNVIAIGMDDSTILIYNARS-SEVISKLEGHSKRVTGLVFSDAL--NILVSSGGDAQIFVWDVDGWGIQTCRS 926 (1093)
Q Consensus 852 ~s~~--d~~~lasg~~dg~i~iwd~~~-~~~~~~l~~h~~~V~~l~~s~dg--~~l~s~s~dg~i~iwd~~~~~~~~~~~ 926 (1093)
||-. ..++||+++.|.-|.|||+.. ..+++++.+|+..|+++.|.-.| ..++++|.|+.|.+ +........ .
T Consensus 509 yS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimF-r~~qk~~~g--~ 585 (1080)
T KOG1408|consen 509 YSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF-RVNQKASSG--R 585 (1080)
T ss_pred ecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhhe-ehhccccCc--e
Confidence 9853 357999999999999999975 35778999999999999999877 77999999997654 333211000 1
Q ss_pred eecCCCcccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcceeeeeecC--CCCCEEEEEEccCCCEEEEEeCCCcE
Q 001352 927 LQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTL 1003 (1093)
Q Consensus 927 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~--h~~~v~~~~fs~dg~~l~t~~~dg~v 1003 (1093)
+.....+......+..++..|..+++++ +.|..|+||++++|+..+.+... |.+....+...|.|-||+|...|+++
T Consensus 586 ~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl 665 (1080)
T KOG1408|consen 586 LFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTL 665 (1080)
T ss_pred eccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCce
Confidence 1111111111135889999999999999 68999999999999999886654 45677788999999999999999999
Q ss_pred EEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecCC
Q 001352 1004 SIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1063 (1093)
Q Consensus 1004 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~ 1063 (1093)
.++|..+|+++++... |+..|. -+.|.+ |.+.|++++.||.|++|.++.
T Consensus 666 ~~~Df~sgEcvA~m~G--------HsE~VT--G~kF~n-DCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 666 CFVDFVSGECVAQMTG--------HSEAVT--GVKFLN-DCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EEEEeccchhhhhhcC--------cchhee--eeeecc-cchhheeecCCceEEEEECch
Confidence 9999999999988873 344444 356887 579999999999999999863
No 14
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=9.5e-41 Score=352.08 Aligned_cols=509 Identities=15% Similarity=0.187 Sum_probs=380.5
Q ss_pred HhhccCCCCceeeeecCCCceEEEEEc--cCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEEC
Q 001352 329 QTLIEGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 406 (1093)
Q Consensus 329 ~~l~~h~~~V~~~~~spdg~~llasg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 406 (1093)
+.+..|...++|++||++|+| +|+|- ....++||++..-..+.+ +..|+-.|+|++|+
T Consensus 72 hlvnssRk~~t~vAfS~~Gry-vatGEcG~~pa~kVw~la~h~vVAE-------------------fvdHKY~vtcvaFs 131 (1080)
T KOG1408|consen 72 HLVNSSRKPLTCVAFSQNGRY-VATGECGRTPASKVWSLAFHGVVAE-------------------FVDHKYNVTCVAFS 131 (1080)
T ss_pred heecccCcceeEEEEcCCCcE-EEecccCCCccceeeeeccccchhh-------------------hhhccccceeeeec
Confidence 445678889999999999996 89986 566799999998776665 66799999999999
Q ss_pred CCCCEEEEEEc--CCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeE----
Q 001352 407 PDGSLLGVAYS--KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY---- 480 (1093)
Q Consensus 407 ~dg~~las~~~--d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~---- 480 (1093)
|.++|+++.+. |-.|.+||+....... -..-...|..++|+.||. +++|.+ ...|++|.++.++...
T Consensus 132 p~~kyvvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~g-nrHvk~wyl~~~~KykdpiP 204 (1080)
T KOG1408|consen 132 PGNKYVVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSG-NRHVKLWYLQIQSKYKDPIP 204 (1080)
T ss_pred CCCcEEEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeee-eeeEEEEEeeccccccCCcc
Confidence 99999998865 4467889887543221 223456799999999999 789888 5679999887665210
Q ss_pred ---------Ee------------------------ecC-----------------CCCeEEeeecccCCccEEEEEecCC
Q 001352 481 ---------SF------------------------EGH-----------------GAPVYSLCPHAKENIHFIFSISVDG 510 (1093)
Q Consensus 481 ---------~~------------------------~~h-----------------~~~v~~~~~~~~~~~~~l~s~~~dg 510 (1093)
.+ .|| +...+|++. +.++|++|+.+|
T Consensus 205 l~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcV----s~r~I~cgCa~g 280 (1080)
T KOG1408|consen 205 LPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICV----SSRLIACGCAKG 280 (1080)
T ss_pred ccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeee----ecceEEEeeccc
Confidence 00 000 111223333 346899999999
Q ss_pred eEEEEEcCCCCceEEecC--------------------C----CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001352 511 KIKAWLYDSLGARVDYDA--------------------P----GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 566 (1093)
Q Consensus 511 ~i~vwd~~~~~~~~~~~~--------------------~----~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 566 (1093)
.|++|+..+..-..++.. . -....++.|++....|.+... +..+++||++.-
T Consensus 281 ~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYn----dhSlYvWDvrD~ 356 (1080)
T KOG1408|consen 281 MVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYN----DHSLYVWDVRDV 356 (1080)
T ss_pred eeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEc----CceEEEEecccc
Confidence 999998765433222110 0 012456788888888888765 677999999876
Q ss_pred eeeeeeecccccCCCeEEEEEcCC-----------CCEEEEEeCCCcEEEEECCCCceEEEEe-----------------
Q 001352 567 AIKRTYQGLQLQHNSVSVVHFDTA-----------KDQILAAGDDHVIKIWDMNKVQLLTTID----------------- 618 (1093)
Q Consensus 567 ~~~~~~~~~~~~~~~v~~v~~~~~-----------~~~l~~~~~dg~i~iwd~~~~~~~~~~~----------------- 618 (1093)
..+......-.|...|+.+.--|. ...+++++.|++|++||+..+..-..+.
T Consensus 357 ~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~ 436 (1080)
T KOG1408|consen 357 NKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDST 436 (1080)
T ss_pred ccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCc
Confidence 544333222222355666554441 2358899999999999997632111100
Q ss_pred ------------------cCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCcee
Q 001352 619 ------------------AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVT 680 (1093)
Q Consensus 619 ------------------~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 680 (1093)
.-+....+.+++.+|+|++||+|..-|.+++|++.+.+....+..|...|.|+.|+-..
T Consensus 437 ~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~--- 513 (1080)
T KOG1408|consen 437 QQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPV--- 513 (1080)
T ss_pred hhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCch---
Confidence 00122457899999999999999999999999999999999999999999999998211
Q ss_pred eeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCC--ceEEEeeccce
Q 001352 681 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGG--QAIFALASNGV 758 (1093)
Q Consensus 681 ~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g--~~l~~~~~dg~ 758 (1093)
-..++|++++.|..|.++|.. +.+.+.....+|...|+++.|.-+| ..+++++.|..
T Consensus 514 ----------------~~~kLLASasrdRlIHV~Dv~-----rny~l~qtld~HSssITsvKFa~~gln~~MiscGADks 572 (1080)
T KOG1408|consen 514 ----------------LTNKLLASASRDRLIHVYDVK-----RNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKS 572 (1080)
T ss_pred ----------------hhhHhhhhccCCceEEEEecc-----cccchhhhhcccccceeEEEEeecCCceEEEeccCchh
Confidence 135789999999999999965 2333333445699999999999888 77899999876
Q ss_pred eEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeE
Q 001352 759 HLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI 837 (1093)
Q Consensus 759 v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~ 837 (1093)
+.+-..+.. .+|.......-. -....++.+++.|..++++++. |..|+||++++|+..
T Consensus 573 imFr~~qk~-------------------~~g~~f~r~t~t--~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~ 631 (1080)
T KOG1408|consen 573 IMFRVNQKA-------------------SSGRLFPRHTQT--LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQV 631 (1080)
T ss_pred hheehhccc-------------------cCceeccccccc--cccceEEEeeeCCCcceEEEEecccceEEEecccccee
Confidence 654221110 011111110000 1356788999999999999998 799999999999999
Q ss_pred EEECC---CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 001352 838 LTIMP---PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW 914 (1093)
Q Consensus 838 ~~~~~---~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iw 914 (1093)
+.|++ |.+....+...| .+-|||+.+.|+++.++|+.+|+++.+..||...|+.+.|++|-++|++++.||.|.||
T Consensus 632 k~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW 710 (1080)
T KOG1408|consen 632 KSFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVW 710 (1080)
T ss_pred eeecccccCCCceEEEEECC-CccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEE
Confidence 99975 557788899999 89999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCC
Q 001352 915 DVDG 918 (1093)
Q Consensus 915 d~~~ 918 (1093)
.+..
T Consensus 711 ~lp~ 714 (1080)
T KOG1408|consen 711 KLPL 714 (1080)
T ss_pred ECch
Confidence 9864
No 15
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=7e-39 Score=338.90 Aligned_cols=605 Identities=13% Similarity=0.149 Sum_probs=427.7
Q ss_pred eeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCC---EEEEEEc
Q 001352 341 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS---LLGVAYS 417 (1093)
Q Consensus 341 ~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~---~las~~~ 417 (1093)
.+|.|.+ ++|.|. ...|.+||..+-.... .+.||..+|+|+.|-|+.+ ++++|+.
T Consensus 20 ~sw~~~~--~vafGa-~~~Iav~dp~k~~i~t-------------------~l~GH~a~VnC~~~l~~s~~~a~~vsG~s 77 (764)
T KOG1063|consen 20 SSWGPGG--LVAFGA-GPAIAVADPEKILIVT-------------------TLDGHVARVNCVHWLPTSEIVAEMVSGDS 77 (764)
T ss_pred ccccccc--eEEecC-CceEEEeCcccceeEE-------------------eccCCccceEEEEEcccccccceEEEccC
Confidence 4456766 366654 4789999987653332 2889999999999999988 8999999
Q ss_pred CCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCc--eeEEeecCCCCeEE--ee
Q 001352 418 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS--RTYSFEGHGAPVYS--LC 493 (1093)
Q Consensus 418 d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~--~~~~~~~h~~~v~~--~~ 493 (1093)
|+.|++|.++. +.+.....+.+|...+.|+.-.+ . .......|+++.+||.+..+ ++..+.-..+.+.. ++
T Consensus 78 D~~v~lW~l~~-~~~~~i~~~~g~~~~~~cv~a~~--~--~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~ 152 (764)
T KOG1063|consen 78 DGRVILWKLRD-EYLIKIYTIQGHCKECVCVVARS--S--VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLA 152 (764)
T ss_pred CCcEEEEEEee-hheEEEEeecCcceeEEEEEeee--e--EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHh
Confidence 99999999993 44555667778776665554322 2 22223789999999985555 33334333333333 34
Q ss_pred ecccCCccEEEEEecCCeEEEEEcCCC--CceEEecCCCCceEEEEEccCCC---EEEEEecCCCCceeEEEEeCCCCe-
Q 001352 494 PHAKENIHFIFSISVDGKIKAWLYDSL--GARVDYDAPGLGCTRMAYSANGR---RLFSCGTSKEGESFLVEWNESEGA- 567 (1093)
Q Consensus 494 ~~~~~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~s~d~~---~l~~~~~~~~~~~~i~iwd~~~~~- 567 (1093)
+.+.++.-.++.|+.+..|.++.-... .....+.+|...|.+++|...+. +|++++. |..|+||.+.-+.
T Consensus 153 ~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQ----D~yIRiW~i~~~~~ 228 (764)
T KOG1063|consen 153 ALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQ----DRYIRIWRIVLGDD 228 (764)
T ss_pred hhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCC----ceEEEEEEEEecCC
Confidence 444334445666777788888855432 44568899999999999987654 4555543 7889999765332
Q ss_pred --------------------ee----------eeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC--ceEE
Q 001352 568 --------------------IK----------RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLT 615 (1093)
Q Consensus 568 --------------------~~----------~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~ 615 (1093)
.. ..+.||. +.|.++.|+|.+..|++++.|.++.+|...+. -.+.
T Consensus 229 ~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHe---DWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~ 305 (764)
T KOG1063|consen 229 EDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHE---DWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVD 305 (764)
T ss_pred ccccccccccccccCCceeeeeeeEEEEEehhhhhcCcc---cceEEEEEccchhhheecccCcceEEEecCCccceEEE
Confidence 01 1123555 99999999999999999999999999987654 3333
Q ss_pred EEecC---CCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCC---ceeeecccccccceeeeecCCCceeeeeccCCce
Q 001352 616 TIDAG---GGLPENPRICFNKNGTLLAVIANENRIKILETPES---NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV 689 (1093)
Q Consensus 616 ~~~~~---~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 689 (1093)
..... +........-|+|+++.+++-+..|.+++|..... .....+.+|...|+.+.+.
T Consensus 306 ~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~--------------- 370 (764)
T KOG1063|consen 306 VVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWD--------------- 370 (764)
T ss_pred EEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeec---------------
Confidence 33322 22234678899999999999999999999994433 3344567899999999997
Q ss_pred EecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCccc
Q 001352 690 SVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL 769 (1093)
Q Consensus 690 ~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~ 769 (1093)
|.|.++++.+.|.+-|+|-.. +.....+.+..| +.|...++++++-+....+++++....+|+|+.+..-.
T Consensus 371 -------psGeflLsvs~DQTTRlFa~w-g~q~~wHEiaRP-QiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv 441 (764)
T KOG1063|consen 371 -------PSGEFLLSVSLDQTTRLFARW-GRQQEWHEIARP-QIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFV 441 (764)
T ss_pred -------CCCCEEEEeccccceeeeccc-ccccceeeeccc-ccccccceeeehccCCceeeecccceeeeeecCcHHHH
Confidence 678899999999999998754 222223444434 35889999999999666688999999999999875432
Q ss_pred ----------------CcCccccc----ccCCccc--CCCCCCc------------------------eeeccC-----C
Q 001352 770 ----------------TLSTEATT----KVPPRLY--QPRHGPQ------------------------FMVNDT-----T 798 (1093)
Q Consensus 770 ----------------~~~~~~~~----~~~~~~~--~~~~~~~------------------------~~~~~~-----~ 798 (1093)
.+.+.... +.+. ++ +..+|.. +....+ +
T Consensus 442 ~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa-~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~K 520 (764)
T KOG1063|consen 442 KSLMAICGKCFKGSDELPDGANVPALGLSNKA-FFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHK 520 (764)
T ss_pred HHHHHHhCccccCchhcccccccccccccCCC-CcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHH
Confidence 00000000 0000 01 1122211 111110 1
Q ss_pred CCCCCCCeeEEEEccCCCEEEEEeC------CeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEE
Q 001352 799 DSNSQEAVPCFALSKNDAYLFSASG------GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY 872 (1093)
Q Consensus 799 ~~~~~~~v~~l~~s~dg~~la~~~d------g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iw 872 (1093)
..||...|.+++.+|+|+++|++.. ..|++|+..++..++.+..|.-.|+.++||| |+++|++.+.|.++.+|
T Consensus 521 LYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl~ 599 (764)
T KOG1063|consen 521 LYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSLY 599 (764)
T ss_pred hccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEEee
Confidence 2479999999999999999999962 3499999999999999999999999999999 99999999999999999
Q ss_pred EcCCcce----eeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccC
Q 001352 873 NARSSEV----ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 948 (1093)
Q Consensus 873 d~~~~~~----~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 948 (1093)
....... ....+.|+..|+++.|+||++++||+|.|++|++|......-. .+... .....+..|+++++.|-
T Consensus 600 ~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~---~i~~~-a~~~~~~aVTAv~~~~~ 675 (764)
T KOG1063|consen 600 EVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDK---YISRF-ACLKFSLAVTAVAYLPV 675 (764)
T ss_pred eeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhh---hhhhh-chhccCCceeeEEeecc
Confidence 9865321 2346789999999999999999999999999999999875211 11110 11122246889988773
Q ss_pred C-----CEEEEE-eCCeEEEEEcC-------Ccce----eeeeecCCCCCEEEEEEccC----------CCEEEEEeCCC
Q 001352 949 Q-----TRFLLV-HETHLAIYEAE-------ELTC----LKQWFPISSVPISQATFSCD----------CRMVFTSFVDG 1001 (1093)
Q Consensus 949 g-----~~l~~~-~d~~i~vwd~~-------~~~~----~~~~~~~h~~~v~~~~fs~d----------g~~l~t~~~dg 1001 (1093)
. ..+++| ..|.|.+|... .+.. ...-..+|...|..+.|+|- ...|++|+.|.
T Consensus 676 ~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~ 755 (764)
T KOG1063|consen 676 DHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDE 755 (764)
T ss_pred ccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccc
Confidence 2 245556 67899999854 1110 01112346889999999974 23579999999
Q ss_pred cEEEEEcC
Q 001352 1002 TLSIHEAS 1009 (1093)
Q Consensus 1002 ~v~vwd~~ 1009 (1093)
+++++++.
T Consensus 756 ~vri~nv~ 763 (764)
T KOG1063|consen 756 SVRIFNVD 763 (764)
T ss_pred eeEEeecc
Confidence 99999874
No 16
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.6e-40 Score=333.42 Aligned_cols=345 Identities=19% Similarity=0.266 Sum_probs=287.8
Q ss_pred chHHHHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCC--CceeEEeeeeeeecccccceeeeeeecCCCCCe
Q 001352 323 FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS--GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 400 (1093)
Q Consensus 323 ~p~~~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 400 (1093)
.|+...+.++ |+.+|.+++|+|-..-++|+|+.|-+.++|++.. +.......+ ..|...-- .-...+..|
T Consensus 167 I~~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~l-----rh~~~~~~--~s~~~nkdV 238 (524)
T KOG0273|consen 167 IPSSKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVL-----RHCIREGG--KSVPSNKDV 238 (524)
T ss_pred ccccceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhh-----hhhhhhhc--ccCCccCCc
Confidence 3444445566 9999999999998765799999999999999874 111110000 00000000 001134689
Q ss_pred EEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeE
Q 001352 401 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 480 (1093)
Q Consensus 401 ~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~ 480 (1093)
++++|+.+|..||+|+.||.++||+...+. +. ++..|.++|.++.|+.+|. ++++++.|+++.+||..+|...+
T Consensus 239 T~L~Wn~~G~~LatG~~~G~~riw~~~G~l-~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~~q 312 (524)
T KOG0273|consen 239 TSLDWNNDGTLLATGSEDGEARIWNKDGNL-IS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTVKQ 312 (524)
T ss_pred ceEEecCCCCeEEEeecCcEEEEEecCchh-hh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceEEE
Confidence 999999999999999999999999988743 33 6788999999999999999 89999999999999999999999
Q ss_pred EeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001352 481 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 560 (1093)
Q Consensus 481 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~i 560 (1093)
.+.-|..+-..+.|-. ...+++.+.||.|+|+.+...++..++.+|.++|.++.|.|.|.+|++++. |++++|
T Consensus 313 ~f~~~s~~~lDVdW~~---~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd----D~Tlki 385 (524)
T KOG0273|consen 313 QFEFHSAPALDVDWQS---NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSD----DGTLKI 385 (524)
T ss_pred eeeeccCCccceEEec---CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecC----CCeeEe
Confidence 9999998866677642 247999999999999999999999999999999999999999999999986 778999
Q ss_pred EeCCCCeeeeeeecccccCCCeEEEEEcCCC---------CEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEE
Q 001352 561 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAK---------DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 631 (1093)
Q Consensus 561 wd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 631 (1093)
|+.........++.|. ..|..+.|+|.| ..+++++.|++|++||+..+.++..+..| ..+|++++|
T Consensus 386 Ws~~~~~~~~~l~~Hs---kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH--~~pVysvaf 460 (524)
T KOG0273|consen 386 WSMGQSNSVHDLQAHS---KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKH--QEPVYSVAF 460 (524)
T ss_pred eecCCCcchhhhhhhc---cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccC--CCceEEEEe
Confidence 9999999999999988 899999999975 36888999999999999999999998755 457999999
Q ss_pred ecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccc
Q 001352 632 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS 711 (1093)
Q Consensus 632 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i 711 (1093)
+|+|+++|+|+.||.|.+|+.++++.++...
T Consensus 461 S~~g~ylAsGs~dg~V~iws~~~~~l~~s~~------------------------------------------------- 491 (524)
T KOG0273|consen 461 SPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ------------------------------------------------- 491 (524)
T ss_pred cCCCcEEEecCCCCeeEeccccchheeEeec-------------------------------------------------
Confidence 9999999999999999999999887766554
Q ss_pred eecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeee
Q 001352 712 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 764 (1093)
Q Consensus 712 ~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~ 764 (1093)
..+.|..+.|+.+|..+.++..||.+++-|+
T Consensus 492 ----------------------~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 492 ----------------------GTGGIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred ----------------------CCCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 2344777889999998999999998888765
No 17
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.7e-41 Score=337.22 Aligned_cols=283 Identities=19% Similarity=0.247 Sum_probs=266.2
Q ss_pred cCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC--CC
Q 001352 333 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD--GS 410 (1093)
Q Consensus 333 ~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d--g~ 410 (1093)
|.+.+|..+.||+|++ +||||+-+|.++||+..++..+.. +.||...|.++.|+|. +.
T Consensus 173 gd~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~~-------------------l~gH~~~v~~~~fhP~~~~~ 232 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQT-------------------LRGHTSRVGAAVFHPVDSDL 232 (459)
T ss_pred cCCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeEE-------------------EeccccceeeEEEccCCCcc
Confidence 6788999999999999 699999999999999999977765 8899999999999996 67
Q ss_pred EEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeE
Q 001352 411 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 490 (1093)
Q Consensus 411 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~ 490 (1093)
.+|+|+.||++++|++.+...+. .+.+|..+|..++|+|+|+ +|+|++.|.+-++||+.++..+....||...|.
T Consensus 233 ~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~ 307 (459)
T KOG0272|consen 233 NLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGVF 307 (459)
T ss_pred ceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhcccccccc
Confidence 99999999999999999876665 6889999999999999999 899999999999999999999999999999999
Q ss_pred EeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeee
Q 001352 491 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 570 (1093)
Q Consensus 491 ~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 570 (1093)
+++|.+ ||.++++|+.|..-+|||++++.++..+.+|..+|.+++|+|+|..|++|+. |++++|||++....+.
T Consensus 308 ~iaf~~--DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~----Dnt~kVWDLR~r~~ly 381 (459)
T KOG0272|consen 308 SIAFQP--DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS----DNTCKVWDLRMRSELY 381 (459)
T ss_pred eeEecC--CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCC----CCcEEEeeecccccce
Confidence 999954 7789999999999999999999999999999999999999999999999986 7789999999999999
Q ss_pred eeecccccCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEE
Q 001352 571 TYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 649 (1093)
Q Consensus 571 ~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 649 (1093)
++.+|. +-|..|.|+| .|.+|++++.|++++||...+..+++.+.+|.. .|.++.+++|+..+++++.|.++++
T Consensus 382 ~ipAH~---nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~--kV~s~Dis~d~~~i~t~s~DRT~KL 456 (459)
T KOG0272|consen 382 TIPAHS---NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG--KVISLDISPDSQAIATSSFDRTIKL 456 (459)
T ss_pred eccccc---chhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCcc--ceEEEEeccCCceEEEeccCceeee
Confidence 999998 9999999999 678899999999999999999999999998755 5999999999999999999999999
Q ss_pred EE
Q 001352 650 LE 651 (1093)
Q Consensus 650 w~ 651 (1093)
|.
T Consensus 457 W~ 458 (459)
T KOG0272|consen 457 WR 458 (459)
T ss_pred cc
Confidence 95
No 18
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=2.6e-37 Score=333.79 Aligned_cols=581 Identities=15% Similarity=0.160 Sum_probs=435.1
Q ss_pred eeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcCCE
Q 001352 341 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 420 (1093)
Q Consensus 341 ~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d~~ 420 (1093)
..+..-|..++++.+.+.+..+||++.-..+.. -..+...|+|++-..+ +..+++.. .
T Consensus 39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~v-------------------s~~lp~~I~alas~~~--~vy~A~g~-~ 96 (910)
T KOG1539|consen 39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFV-------------------SKPLPDKITALASDKD--YVYVASGN-K 96 (910)
T ss_pred eeeeecCceEEEEEecCceEEEEeccceEEEEe-------------------cCCCCCceEEEEecCc--eEEEecCc-E
Confidence 666666667888889999999999998877764 2347788999886544 44444433 3
Q ss_pred EEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCC-cee----EEeecCCCCeEEeeec
Q 001352 421 VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRT----YSFEGHGAPVYSLCPH 495 (1093)
Q Consensus 421 i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~~~----~~~~~h~~~v~~~~~~ 495 (1093)
|.+|.. |+.++. .+.+|...|.-+.- -|. .++++..++.+.||+..++ ..+ .-++.....|+++. +
T Consensus 97 i~~~~r--gk~i~~--~~~~~~a~v~~l~~--fGe--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-H 167 (910)
T KOG1539|consen 97 IYAYAR--GKHIRH--TTLLHGAKVHLLLP--FGE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-H 167 (910)
T ss_pred EEEEEc--cceEEE--EeccccceEEEEee--ecc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-c
Confidence 666654 333332 45678777776654 355 6888999999999998874 221 11222333377764 4
Q ss_pred ccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecc
Q 001352 496 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 575 (1093)
Q Consensus 496 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 575 (1093)
|+.--+.++.|+.+|.+.+|++++++.+.++......|+++.-+|-=..++.|.. +|.|.+++++.++.+..|+..
T Consensus 168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~----~G~ViifNlK~dkil~sFk~d 243 (910)
T KOG1539|consen 168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLE----NGTVIIFNLKFDKILMSFKQD 243 (910)
T ss_pred chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEecc----CceEEEEEcccCcEEEEEEcc
Confidence 4444457999999999999999999999999999999999999999889999876 777999999999999999876
Q ss_pred cccCCCeEEEEEcCCCCEEEE-EeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001352 576 QLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 654 (1093)
Q Consensus 576 ~~~~~~v~~v~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 654 (1093)
. +.|++++|..||+.+++ |+..|.+.+||++..+.+..+... +...+....|-|....+++++.|+.+++|-.++
T Consensus 244 ~---g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~na-h~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~ 319 (910)
T KOG1539|consen 244 W---GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNA-HYGSVTGATFLPGEPVLVTAGADNSLKVWVFDS 319 (910)
T ss_pred c---cceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeecc-ccCCcccceecCCCceEeeccCCCceeEEEeeC
Confidence 5 89999999999987655 667799999999998888776532 234688899999999999999999999887664
Q ss_pred C----ceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccC
Q 001352 655 S----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLP 730 (1093)
Q Consensus 655 ~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~ 730 (1093)
+ +.++...||..+..++.|. ...|..+.+++.|++.+.+++......+....
T Consensus 320 ~dg~pR~LR~R~GHs~Pp~~irfy---------------------~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~--- 375 (910)
T KOG1539|consen 320 GDGVPRLLRSRGGHSAPPSCIRFY---------------------GSQGHFILSAKQDRTLRSFSVISESQSQELGQ--- 375 (910)
T ss_pred CCCcchheeeccCCCCCchheeee---------------------ccCcEEEEecccCcchhhhhhhHHHHhHhhcc---
Confidence 3 5667778999999888887 46788899999999998888542211111000
Q ss_pred ccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEE
Q 001352 731 SKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA 810 (1093)
Q Consensus 731 ~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 810 (1093)
......++ .+. +... .. + .-.+|..++
T Consensus 376 ----------~~~~~~~k---------k~~----------------------~~~~------~~--~----k~p~i~~fa 402 (910)
T KOG1539|consen 376 ----------LHNKKRAK---------KVN----------------------VFST------EK--L----KLPPIVEFA 402 (910)
T ss_pred ----------cccccccc---------ccc----------------------ccch------hh--h----cCCcceeee
Confidence 00000000 000 0000 00 0 122333444
Q ss_pred EccC-----CCEEEEE-eCCeEEEEEccCcee-EEEEC-----CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcc
Q 001352 811 LSKN-----DAYLFSA-SGGVISLYIVMTFKT-ILTIM-----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 878 (1093)
Q Consensus 811 ~s~d-----g~~la~~-~dg~i~iwd~~~~~~-~~~~~-----~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~ 878 (1093)
+... ...++.. ++...+.|++..... ...+. .....+++++.++ .|++.+.|+..|.|.+|++++|-
T Consensus 403 ~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSGi 481 (910)
T KOG1539|consen 403 FENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSGI 481 (910)
T ss_pred cccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccCe
Confidence 3321 1223322 246788999876554 22232 2346899999999 99999999999999999999999
Q ss_pred eeeec---ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE-
Q 001352 879 VISKL---EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL- 954 (1093)
Q Consensus 879 ~~~~l---~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~- 954 (1093)
....+ ..|.++|++++...-++.+++++.+|.+++||+....... ... .+..+..+..+.....+++
T Consensus 482 ~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~-----~l~----l~~~~~~iv~hr~s~l~a~~ 552 (910)
T KOG1539|consen 482 HRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKK-----SLR----LGSSITGIVYHRVSDLLAIA 552 (910)
T ss_pred eecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceee-----eec----cCCCcceeeeeehhhhhhhh
Confidence 88888 5799999999998888999999999999999999854222 211 1125778888888888888
Q ss_pred EeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCccce
Q 001352 955 VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYP 1034 (1093)
Q Consensus 955 ~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1034 (1093)
..|-.|.++|+.+.+.++. +.||+.+|++++|||||++|++++.|++|++||+.++.++..+... ..+
T Consensus 553 ~ddf~I~vvD~~t~kvvR~-f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd-----------~~~ 620 (910)
T KOG1539|consen 553 LDDFSIRVVDVVTRKVVRE-FWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD-----------SPC 620 (910)
T ss_pred cCceeEEEEEchhhhhhHH-hhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC-----------Ccc
Confidence 4667899999999988887 6689999999999999999999999999999999999999777611 234
Q ss_pred eEEEeCCCCCCEEEEEeCC-CcEEEEe
Q 001352 1035 HAIAAHPLKPTQFAVGLTN-GEVYVIE 1060 (1093)
Q Consensus 1035 ~~~~~~p~d~~~l~~~~~d-g~v~~w~ 1060 (1093)
.+++|+| .|++|||+..| ..|++|-
T Consensus 621 ~sls~SP-ngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 621 TSLSFSP-NGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred eeeEECC-CCCEEEEEEecCceEEEEE
Confidence 6789999 59999999999 6899996
No 19
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-39 Score=306.25 Aligned_cols=297 Identities=20% Similarity=0.286 Sum_probs=254.0
Q ss_pred HHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC
Q 001352 328 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 407 (1093)
Q Consensus 328 ~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~ 407 (1093)
.-+|++|+++|+.++..+.+..++.+++.|.++.+|++.......- .+ ...+.||+..|..++.++
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G------------~~--~r~~~GHsH~v~dv~~s~ 73 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYG------------VP--VRRLTGHSHFVSDVVLSS 73 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccC------------ce--eeeeeccceEecceEEcc
Confidence 3578999999999999999888899999999999999876422211 11 112889999999999999
Q ss_pred CCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecC--
Q 001352 408 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH-- 485 (1093)
Q Consensus 408 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h-- 485 (1093)
||.+.++++.|+++++||+.+|+..+ .|.||...|.+++|++|++ .++||+.|++|++||+. |.+..++..+
T Consensus 74 dg~~alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~-g~ck~t~~~~~~ 147 (315)
T KOG0279|consen 74 DGNFALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTL-GVCKYTIHEDSH 147 (315)
T ss_pred CCceEEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeec-ccEEEEEecCCC
Confidence 99999999999999999999996554 6789999999999999999 69999999999999955 4555555443
Q ss_pred CCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001352 486 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 565 (1093)
Q Consensus 486 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~ 565 (1093)
.+.|.+++|+|.++..+|++++.|++|++||+++.+....+.+|.+.++.+++||||...++|+. ++.+.+||++.
T Consensus 148 ~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgk----dg~~~LwdL~~ 223 (315)
T KOG0279|consen 148 REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGK----DGEAMLWDLNE 223 (315)
T ss_pred cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCC----CceEEEEEccC
Confidence 78999999999988899999999999999999999999999999999999999999999999876 67799999999
Q ss_pred CeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCC-------CCCCceEEEecCCCEE
Q 001352 566 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-------LPENPRICFNKNGTLL 638 (1093)
Q Consensus 566 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~v~~s~~~~~l 638 (1093)
++.+..+... ..|.+++|+|+. +.+++..+..|+|||++++..+..+..... .+...+++|++||..|
T Consensus 224 ~k~lysl~a~----~~v~sl~fspnr-ywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tL 298 (315)
T KOG0279|consen 224 GKNLYSLEAF----DIVNSLCFSPNR-YWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTL 298 (315)
T ss_pred CceeEeccCC----CeEeeEEecCCc-eeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEE
Confidence 9998777653 589999999985 445555556699999999998877754321 2335678999999999
Q ss_pred EEEECCCeEEEEEcC
Q 001352 639 AVIANENRIKILETP 653 (1093)
Q Consensus 639 ~~~~~dg~i~iw~~~ 653 (1093)
+.|..|+.|++|.+.
T Consensus 299 f~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 299 FAGYTDNVIRVWQVA 313 (315)
T ss_pred EeeecCCcEEEEEee
Confidence 999999999999864
No 20
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.7e-39 Score=305.81 Aligned_cols=292 Identities=17% Similarity=0.256 Sum_probs=267.1
Q ss_pred HhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC
Q 001352 329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 408 (1093)
Q Consensus 329 ~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d 408 (1093)
++|+||.+.|.++.|++|.++ +++++.||.++|||.-|...++. ++-....|..+||+|.
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~-ivSaSqDGklIvWDs~TtnK~ha-------------------ipl~s~WVMtCA~sPS 108 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRR-IVSASQDGKLIVWDSFTTNKVHA-------------------IPLPSSWVMTCAYSPS 108 (343)
T ss_pred EEecccccceeeeEecCCcCe-EEeeccCCeEEEEEcccccceeE-------------------EecCceeEEEEEECCC
Confidence 789999999999999999996 89999999999999999887765 3336789999999999
Q ss_pred CCEEEEEEcCCEEEEEEccCC--C-cccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecC
Q 001352 409 GSLLGVAYSKHIVQLYAYHGG--S-DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 485 (1093)
Q Consensus 409 g~~las~~~d~~i~iwd~~~~--~-~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h 485 (1093)
|+++|+|+-|+...||++.+. + .++...++.+|++.+.|+.|.+|+. |+|++.|.++.+||+++|+.+..|.+|
T Consensus 109 g~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f~GH 185 (343)
T KOG0286|consen 109 GNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVFHGH 185 (343)
T ss_pred CCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEecCC
Confidence 999999999999999999865 2 2344456889999999999999886 999999999999999999999999999
Q ss_pred CCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001352 486 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 565 (1093)
Q Consensus 486 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~ 565 (1093)
.+.|.++.+.|+ +++.+++|+-|+..++||++.+.....+.+|...|++++|.|+|.-+++|+. ++..++||++.
T Consensus 186 ~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSD----D~tcRlyDlRa 260 (343)
T KOG0286|consen 186 TGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSD----DATCRLYDLRA 260 (343)
T ss_pred cccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCC----CceeEEEeecC
Confidence 999999999875 7789999999999999999999999999999999999999999999999986 77899999999
Q ss_pred CeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCC
Q 001352 566 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 645 (1093)
Q Consensus 566 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 645 (1093)
.+.+..|.... ...+|++++|+..|++|++|..|.++.+||.-.++.+..+.+|.+ .|.++..+|||.-+++|+.|.
T Consensus 261 D~~~a~ys~~~-~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN--RvScl~~s~DG~av~TgSWDs 337 (343)
T KOG0286|consen 261 DQELAVYSHDS-IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN--RVSCLGVSPDGMAVATGSWDS 337 (343)
T ss_pred CcEEeeeccCc-ccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCC--eeEEEEECCCCcEEEecchhH
Confidence 99998887433 446899999999999999999999999999999999999987755 699999999999999999999
Q ss_pred eEEEEE
Q 001352 646 RIKILE 651 (1093)
Q Consensus 646 ~i~iw~ 651 (1093)
.++||.
T Consensus 338 ~lriW~ 343 (343)
T KOG0286|consen 338 TLRIWA 343 (343)
T ss_pred heeecC
Confidence 999994
No 21
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-37 Score=325.21 Aligned_cols=481 Identities=17% Similarity=0.268 Sum_probs=360.8
Q ss_pred HHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEEC
Q 001352 327 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 406 (1093)
Q Consensus 327 ~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 406 (1093)
..+++..|++.|.++.|+|.... +.++-.+|.|.|||.++...++.+. -...+|.+..|-
T Consensus 5 ~krk~~~rSdRVKsVd~HPtePw-~la~LynG~V~IWnyetqtmVksfe-------------------V~~~PvRa~kfi 64 (794)
T KOG0276|consen 5 FKRKFQSRSDRVKSVDFHPTEPW-ILAALYNGDVQIWNYETQTMVKSFE-------------------VSEVPVRAAKFI 64 (794)
T ss_pred hhhHhhccCCceeeeecCCCCce-EEEeeecCeeEEEecccceeeeeee-------------------ecccchhhheee
Confidence 34567779999999999999995 6666789999999999998887633 256789999999
Q ss_pred CCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCC-ceeEEeecC
Q 001352 407 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGH 485 (1093)
Q Consensus 407 ~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~~~~~~~~h 485 (1093)
+-..++++|++|..|+||+.++++.+. .+..|.+.|.+++.+|... +++|+|.|-+|++||.+.+ .+.++|.||
T Consensus 65 aRknWiv~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH 139 (794)
T KOG0276|consen 65 ARKNWIVTGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGH 139 (794)
T ss_pred eccceEEEecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCc
Confidence 999999999999999999999997665 7889999999999999988 8999999999999999876 788999999
Q ss_pred CCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCC--CEEEEEecCCCCceeEEEEeC
Q 001352 486 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG--RRLFSCGTSKEGESFLVEWNE 563 (1093)
Q Consensus 486 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~--~~l~~~~~~~~~~~~i~iwd~ 563 (1093)
...|.+++|+|. |...+++++-|++|++|.+....+..++.+|...|+++.|-+-| .+|++++. |..+.+||.
T Consensus 140 ~HyVMqv~fnPk-D~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD----D~tiKvWDy 214 (794)
T KOG0276|consen 140 EHYVMQVAFNPK-DPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD----DLTIKVWDY 214 (794)
T ss_pred ceEEEEEEecCC-CccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC----CceEEEeec
Confidence 999999999987 45799999999999999999999999999999999999998754 58999875 788999999
Q ss_pred CCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEEC
Q 001352 564 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 643 (1093)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 643 (1093)
++..+++++.||. ..|..+.|+|.-..+++|++||+++||+..+-++..++... ...+.+++-.+.++.+++|.+
T Consensus 215 Qtk~CV~TLeGHt---~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g--leRvW~I~~~k~~~~i~vG~D 289 (794)
T KOG0276|consen 215 QTKSCVQTLEGHT---NNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYG--LERVWCIAAHKGDGKIAVGFD 289 (794)
T ss_pred chHHHHHHhhccc---ccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcC--CceEEEEeecCCCCeEEEecc
Confidence 9999999999999 89999999999999999999999999999998888887755 346899999998889999998
Q ss_pred CCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCcc
Q 001352 644 ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSE 723 (1093)
Q Consensus 644 dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~ 723 (1093)
.|.+.+ .+....+...+ .+.|+.+ |...
T Consensus 290 eg~i~v-~lgreeP~vsM----------------------------------d~~gKIi-----------wa~~------ 317 (794)
T KOG0276|consen 290 EGSVTV-KLGREEPAVSM----------------------------------DSNGKII-----------WAVH------ 317 (794)
T ss_pred CCcEEE-EccCCCCceee----------------------------------cCCccEE-----------EEcC------
Confidence 887755 22222111111 1112211 2110
Q ss_pred ccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCce--eeccCCCCC
Q 001352 724 CQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF--MVNDTTDSN 801 (1093)
Q Consensus 724 ~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 801 (1093)
+.|..+..-+ .+..+ ++..|+++ ...++..
T Consensus 318 ------------~ei~~~~~ks-------~~~~~---------------------------ev~DgErL~LsvKeLgs-- 349 (794)
T KOG0276|consen 318 ------------SEIQAVNLKS-------VGAQK---------------------------EVTDGERLPLSVKELGS-- 349 (794)
T ss_pred ------------ceeeeeecee-------ccCcc---------------------------cccCCccccchhhhccc--
Confidence 1111111100 00000 11111111 0011100
Q ss_pred CCCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceee
Q 001352 802 SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS 881 (1093)
Q Consensus 802 ~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~ 881 (1093)
-.-....++-+|+|+++++++||.-.||..-..+. ...+.-....|++ |....|+-..++.|+++ ++.+...
T Consensus 350 ~eiyPq~L~hsPNGrfV~VcgdGEyiIyTala~Rn-----K~fG~~~eFvw~~-dsne~avRes~~~vki~--knfke~k 421 (794)
T KOG0276|consen 350 VEIYPQTLAHSPNGRFVVVCGDGEYIIYTALALRN-----KAFGSGLEFVWAA-DSNEFAVRESNGNVKIF--KNFKEHK 421 (794)
T ss_pred cccchHHhccCCCCcEEEEecCccEEEEEeeehhh-----cccccceeEEEcC-CCCeEEEEecCCceEEE--ecceecc
Confidence 11122357889999999999999999987543322 2445667889999 76777778778899998 6666665
Q ss_pred ecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCCeEE
Q 001352 882 KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLA 961 (1093)
Q Consensus 882 ~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~ 961 (1093)
.+...-. +-.+ -.|.+|...+ ++.+++||.++++... ..+- ....+.|+.+|.+++.+.|...+
T Consensus 422 si~~~~~---~e~i-~gg~Llg~~s-s~~~~fydW~~~~lVr-----rI~v------~~k~v~w~d~g~lVai~~d~Sfy 485 (794)
T KOG0276|consen 422 SIRPDMS---AEGI-FGGPLLGVRS-SDFLCFYDWESGELVR-----RIEV------TSKHVYWSDNGELVAIAGDDSFY 485 (794)
T ss_pred ccccccc---eeee-cCCceEEEEe-CCeEEEEEcccceEEE-----EEee------ccceeEEecCCCEEEEEecCcee
Confidence 5542111 1111 2345555555 5559999999866433 2222 23478999999999998888766
Q ss_pred EEEcC
Q 001352 962 IYEAE 966 (1093)
Q Consensus 962 vwd~~ 966 (1093)
++...
T Consensus 486 il~~n 490 (794)
T KOG0276|consen 486 ILKFN 490 (794)
T ss_pred EEEec
Confidence 66543
No 22
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3e-40 Score=329.71 Aligned_cols=285 Identities=17% Similarity=0.258 Sum_probs=266.1
Q ss_pred CCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECC
Q 001352 395 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 474 (1093)
Q Consensus 395 ~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~ 474 (1093)
|.+.+|..+.||+|++.||+|+.+|.++||+..+...+. ++.||...|.++.|+|....+.++||+.||++++|++.
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~---~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ---TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE---EEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 467899999999999999999999999999999875444 78999999999999998422279999999999999999
Q ss_pred CCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCC
Q 001352 475 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 554 (1093)
Q Consensus 475 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~ 554 (1093)
+..++..+.+|...|..++|+| +|++|++++.|.+-++||+.++.......+|...|.+++|.|||..+++|+.
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHP--sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl---- 323 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHP--SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL---- 323 (459)
T ss_pred CCcchhhhhcchhhheeeeecC--CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc----
Confidence 9999999999999999999966 6689999999999999999999999999999999999999999999999987
Q ss_pred ceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEec-
Q 001352 555 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK- 633 (1093)
Q Consensus 555 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~- 633 (1093)
|..-++||+++|.++..+.+|. .+|.+|.|+|+|..+++||.|++++|||++..+.+.+++.|.. .|..|.|+|
T Consensus 324 D~~~RvWDlRtgr~im~L~gH~---k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n--lVS~Vk~~p~ 398 (459)
T KOG0272|consen 324 DSLGRVWDLRTGRCIMFLAGHI---KEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN--LVSQVKYSPQ 398 (459)
T ss_pred cchhheeecccCcEEEEecccc---cceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc--hhhheEeccc
Confidence 6678999999999999999988 9999999999999999999999999999999999999987754 599999998
Q ss_pred CCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeeccccccee
Q 001352 634 NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 713 (1093)
Q Consensus 634 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~ 713 (1093)
.|.+|++++.|++++||...+..+++.+.||.+.|.++.++ +|+..+++++.|+++++
T Consensus 399 ~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis----------------------~d~~~i~t~s~DRT~KL 456 (459)
T KOG0272|consen 399 EGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDIS----------------------PDSQAIATSSFDRTIKL 456 (459)
T ss_pred CCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEec----------------------cCCceEEEeccCceeee
Confidence 78999999999999999999999999999999999999886 78899999999999999
Q ss_pred cc
Q 001352 714 EK 715 (1093)
Q Consensus 714 w~ 715 (1093)
|.
T Consensus 457 W~ 458 (459)
T KOG0272|consen 457 WR 458 (459)
T ss_pred cc
Confidence 96
No 23
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=1.5e-35 Score=320.15 Aligned_cols=546 Identities=13% Similarity=0.162 Sum_probs=403.3
Q ss_pred cCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEE
Q 001352 333 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 412 (1093)
Q Consensus 333 ~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~l 412 (1093)
.+.+.|+|++=+.+-- ++|.| ..|.+|. .|+.+.. +..+|...|.-+. |=|.++
T Consensus 74 ~lp~~I~alas~~~~v-y~A~g---~~i~~~~--rgk~i~~------------------~~~~~~a~v~~l~--~fGe~l 127 (910)
T KOG1539|consen 74 PLPDKITALASDKDYV-YVASG---NKIYAYA--RGKHIRH------------------TTLLHGAKVHLLL--PFGEHL 127 (910)
T ss_pred CCCCceEEEEecCceE-EEecC---cEEEEEE--ccceEEE------------------EeccccceEEEEe--eecceE
Confidence 4667899998777654 24433 4566665 3433321 1456777776654 458899
Q ss_pred EEEEcCCEEEEEEccCC-CcccceEEe-ccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeE
Q 001352 413 GVAYSKHIVQLYAYHGG-SDARQQLEI-DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 490 (1093)
Q Consensus 413 as~~~d~~i~iwd~~~~-~~~~~~~~~-~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~ 490 (1093)
+++..++.+.||+..++ +.......+ ....+.|+++ ++|..--..++.|+.+|.+++|++.+++.+++++++...|+
T Consensus 128 ia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT 206 (910)
T KOG1539|consen 128 IAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRIT 206 (910)
T ss_pred EEEEccCcEEEEEeccccccccccceeeeccCCceeeE-ecchhheeeEEEeecCCcEEEEEeccCcEEEEeccccccee
Confidence 99999999999999884 221111122 2222237766 45553222588999999999999999999999999999999
Q ss_pred EeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeee
Q 001352 491 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 570 (1093)
Q Consensus 491 ~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 570 (1093)
++.-+|-- ..++.|..+|+|.+++++..+.+..+....++|++++|..||..+.+.+. ..|.+.+||++..+.+.
T Consensus 207 ~ieqsPaL--DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~---~~G~m~~wDLe~kkl~~ 281 (910)
T KOG1539|consen 207 AIEQSPAL--DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGR---SNGDMAFWDLEKKKLIN 281 (910)
T ss_pred EeccCCcc--eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEecc---CCceEEEEEcCCCeeee
Confidence 99775544 58999999999999999999999999988899999999999998777654 25669999999988887
Q ss_pred eee-cccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc----eEEEEecCCCCCCCceEEEe-cCCCEEEEEECC
Q 001352 571 TYQ-GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ----LLTTIDAGGGLPENPRICFN-KNGTLLAVIANE 644 (1093)
Q Consensus 571 ~~~-~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~s-~~~~~l~~~~~d 644 (1093)
... .|. +.+....|.|....+++++.|+.+++|=.+++. .++... +|..+..++.|. .+|..+.+++.|
T Consensus 282 v~~nah~---~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~--GHs~Pp~~irfy~~~g~~ilsa~~D 356 (910)
T KOG1539|consen 282 VTRNAHY---GSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRG--GHSAPPSCIRFYGSQGHFILSAKQD 356 (910)
T ss_pred eeecccc---CCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeecc--CCCCCchheeeeccCcEEEEecccC
Confidence 776 444 789999999999999999999999988555433 233333 445567889887 689999999999
Q ss_pred CeEEEEEcCCCceeeeccc------------------ccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeec
Q 001352 645 NRIKILETPESNSVDAAGV------------------LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE 706 (1093)
Q Consensus 645 g~i~iw~~~~~~~~~~~~~------------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~ 706 (1093)
++++.+++.....-+.+.. .-.+|..+++.-.. .....+.+...-
T Consensus 357 rt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~R-----------------E~~W~Nv~~~h~ 419 (910)
T KOG1539|consen 357 RTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAR-----------------EKEWDNVITAHK 419 (910)
T ss_pred cchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccch-----------------hhhhcceeEEec
Confidence 9999988764321111110 01112222221000 012334444555
Q ss_pred ccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCC
Q 001352 707 AENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQP 786 (1093)
Q Consensus 707 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1093)
.+...+.|+......++...-.-+.......+.+++.++-|++.+.|.+.|.|.+|+++.+-.
T Consensus 420 ~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~----------------- 482 (910)
T KOG1539|consen 420 GKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIH----------------- 482 (910)
T ss_pred CcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCee-----------------
Confidence 566788899876555433322222222456789999999999999999999999988765421
Q ss_pred CCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeC
Q 001352 787 RHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD 865 (1093)
Q Consensus 787 ~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~ 865 (1093)
...+- ....|..+|+.++...-++.+++++ +|.+.+||..+...+..+. -...++++.++. ...++|++..
T Consensus 483 -----r~sf~-~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr-~s~l~a~~~d 554 (910)
T KOG1539|consen 483 -----RKSFG-DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHR-VSDLLAIALD 554 (910)
T ss_pred -----ecccc-cCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeee-hhhhhhhhcC
Confidence 11110 1124999999999998888888887 7999999999888777776 456788888888 7789999999
Q ss_pred CCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEE
Q 001352 866 DSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQF 945 (1093)
Q Consensus 866 dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 945 (1093)
|-.|+++|..+.+.++.|.||.+.|++++|||||++|++++.|++|++||+.++.......+. .+.+++.|
T Consensus 555 df~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd---------~~~~sls~ 625 (910)
T KOG1539|consen 555 DFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD---------SPCTSLSF 625 (910)
T ss_pred ceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC---------CcceeeEE
Confidence 999999999999999999999999999999999999999999999999999997654432222 25789999
Q ss_pred ccCCCEEEEE-eC-CeEEEEEcC
Q 001352 946 HKDQTRFLLV-HE-THLAIYEAE 966 (1093)
Q Consensus 946 s~dg~~l~~~-~d-~~i~vwd~~ 966 (1093)
||+|.+||+. .| ..|++|.-.
T Consensus 626 SPngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 626 SPNGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred CCCCCEEEEEEecCceEEEEEch
Confidence 9999999995 33 579999743
No 24
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.3e-37 Score=293.27 Aligned_cols=287 Identities=15% Similarity=0.179 Sum_probs=265.4
Q ss_pred eecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEE
Q 001352 392 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 471 (1093)
Q Consensus 392 ~~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw 471 (1093)
+++||.+.|.++.|++|+++|++++.||.+.|||.-+..... .++-....|..++|+|.|+ +++.|+.|+...||
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h---aipl~s~WVMtCA~sPSg~--~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH---AIPLPSSWVMTCAYSPSGN--FVACGGLDNKCSIY 124 (343)
T ss_pred EecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee---EEecCceeEEEEEECCCCC--eEEecCcCceeEEE
Confidence 388999999999999999999999999999999998865443 4556778999999999999 89999999999999
Q ss_pred ECCCC------ceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEcc-CCCE
Q 001352 472 DAVTG------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRR 544 (1093)
Q Consensus 472 d~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~-d~~~ 544 (1093)
++.+. +..+.+.+|.+.+.++.|.. | ..|++++.|.+..+||++++.....+.+|.+.|.++.++| +++.
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~d--D-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLD--D-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcC--C-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCe
Confidence 99865 44567899999999999854 3 5899999999999999999999999999999999999999 9999
Q ss_pred EEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCC
Q 001352 545 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 624 (1093)
Q Consensus 545 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 624 (1093)
+++|+- +...++||++.+.+++.|.+|. ..|+++.|.|+|.-+++|++|++.++||++..+.+..+.......
T Consensus 202 FvSg~c----D~~aklWD~R~~~c~qtF~ghe---sDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~ 274 (343)
T KOG0286|consen 202 FVSGGC----DKSAKLWDVRSGQCVQTFEGHE---SDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIIC 274 (343)
T ss_pred EEeccc----ccceeeeeccCcceeEeecccc---cccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccC
Confidence 999986 6679999999999999999999 999999999999999999999999999999999999998877778
Q ss_pred CCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCcccee
Q 001352 625 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 704 (1093)
Q Consensus 625 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s 704 (1093)
+|++++||..|++|++|..|..+.+||.-.++.+..+.+|.+.|.++..+ |||--+++
T Consensus 275 gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s----------------------~DG~av~T 332 (343)
T KOG0286|consen 275 GITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVS----------------------PDGMAVAT 332 (343)
T ss_pred CceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEEC----------------------CCCcEEEe
Confidence 89999999999999999999999999999999999999999999999997 77888899
Q ss_pred ecccccceecc
Q 001352 705 VEAENKSEVEK 715 (1093)
Q Consensus 705 ~~~d~~i~~w~ 715 (1093)
|+.|.++|+|.
T Consensus 333 gSWDs~lriW~ 343 (343)
T KOG0286|consen 333 GSWDSTLRIWA 343 (343)
T ss_pred cchhHheeecC
Confidence 99999999994
No 25
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.4e-35 Score=314.05 Aligned_cols=591 Identities=14% Similarity=0.172 Sum_probs=402.6
Q ss_pred EEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCC-cEEEEEEcCCCcEEEEECCCC--cee
Q 001352 403 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK-QISVITCGDDKTIKVWDAVTG--SRT 479 (1093)
Q Consensus 403 v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~-~l~l~s~~~d~~i~vwd~~~~--~~~ 479 (1093)
.+|.| +..+|.| ....|.+||.... .....+.||..+|+|+.|.|+.+ ...+++|+.|+.|++|.++.. .++
T Consensus 20 ~sw~~-~~~vafG-a~~~Iav~dp~k~---~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i 94 (764)
T KOG1063|consen 20 SSWGP-GGLVAFG-AGPAIAVADPEKI---LIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKI 94 (764)
T ss_pred ccccc-cceEEec-CCceEEEeCcccc---eeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEE
Confidence 34544 3355555 4557999998775 23347889999999999998875 115899999999999998843 456
Q ss_pred EEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCc--eEEecCCCC--ceEEEEEcc-CCCEEEEEecCCCC
Q 001352 480 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGL--GCTRMAYSA-NGRRLFSCGTSKEG 554 (1093)
Q Consensus 480 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~--~v~~~~~s~-d~~~l~~~~~~~~~ 554 (1093)
.++.+|...+.++.-.+ ....+.+.|+.+.+||.+..+. ...+..... -..|+++.+ .+.++.+++.+
T Consensus 95 ~~~~g~~~~~~cv~a~~----~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs--- 167 (764)
T KOG1063|consen 95 YTIQGHCKECVCVVARS----SVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGS--- 167 (764)
T ss_pred EeecCcceeEEEEEeee----eEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCc---
Confidence 77788777776664211 1223337999999999855441 111111111 234566666 45555555432
Q ss_pred ceeEEEEeCCCC--eeeeeeecccccCCCeEEEEEcCCCC---EEEEEeCCCcEEEEECCCCc-----------------
Q 001352 555 ESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKD---QILAAGDDHVIKIWDMNKVQ----------------- 612 (1093)
Q Consensus 555 ~~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~v~~~~~~~---~l~~~~~dg~i~iwd~~~~~----------------- 612 (1093)
+..|.++.-.+. +.+..+.||. +.|.+++|...+. +++++|.|..||||.+.-+.
T Consensus 168 ~~~v~~~s~~~d~f~~v~el~GH~---DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~ 244 (764)
T KOG1063|consen 168 KFVVDLYSSSADSFARVAELEGHT---DWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNL 244 (764)
T ss_pred ceEEEEeccCCcceeEEEEeeccc---hhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCC
Confidence 566777765433 4567778888 9999999987654 67889999999999875322
Q ss_pred ----eEEEEe--------cCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceee--ecc-----cccccceeeee
Q 001352 613 ----LLTTID--------AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD--AAG-----VLSDNLRKLSV 673 (1093)
Q Consensus 613 ----~~~~~~--------~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~-----~~~~~i~~~~~ 673 (1093)
....+. ..+|...|+++.|+|.+..|.+++.|.++.+|...+..-+. ..+ +.........|
T Consensus 245 ~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw 324 (764)
T KOG1063|consen 245 PVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLW 324 (764)
T ss_pred ceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEE
Confidence 111111 12456789999999999999999999999999987653322 221 11111222222
Q ss_pred cCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEe
Q 001352 674 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFAL 753 (1093)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~ 753 (1093)
+|++..+++-+..|..++|. +.+.......... .+|...|..++|.|.|++++++
T Consensus 325 ----------------------~~n~~~ii~~g~~Gg~hlWk--t~d~~~w~~~~~i-SGH~~~V~dv~W~psGeflLsv 379 (764)
T KOG1063|consen 325 ----------------------SPNSNVIIAHGRTGGFHLWK--TKDKTFWTQEPVI-SGHVDGVKDVDWDPSGEFLLSV 379 (764)
T ss_pred ----------------------cCCCCEEEEecccCcEEEEe--ccCccceeecccc-ccccccceeeeecCCCCEEEEe
Confidence 57788889999999999998 2233333322222 4699999999999999999999
Q ss_pred eccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeC-CeEEEEEcc
Q 001352 754 ASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVM 832 (1093)
Q Consensus 754 ~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d-g~i~iwd~~ 832 (1093)
+.|.+-|++---.++. -|. ++.... -|....+|++|-+....+++|.| ..+|+|+..
T Consensus 380 s~DQTTRlFa~wg~q~-------------~wH-----EiaRPQ----iHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aP 437 (764)
T KOG1063|consen 380 SLDQTTRLFARWGRQQ-------------EWH-----EIARPQ----IHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAP 437 (764)
T ss_pred ccccceeeeccccccc-------------cee-----eecccc----cccccceeeehccCCceeeecccceeeeeecCc
Confidence 9999888864221100 021 111111 27778888888875555555554 667787742
Q ss_pred C-------------------------------------------cee---------------------------------
Q 001352 833 T-------------------------------------------FKT--------------------------------- 836 (1093)
Q Consensus 833 ~-------------------------------------------~~~--------------------------------- 836 (1093)
. |..
T Consensus 438 k~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPE 517 (764)
T KOG1063|consen 438 KSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPE 517 (764)
T ss_pred HHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchh
Confidence 1 100
Q ss_pred EEEECCCCCCeEEEEEcCCCCCEEEEEeCCC-----eEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcE
Q 001352 837 ILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-----TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQI 911 (1093)
Q Consensus 837 ~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg-----~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i 911 (1093)
++.+.+|..+|.+++.+| +++++|+++... .|++|+..+...+..+.+|+-.|+.++|||||++|+++|.|+++
T Consensus 518 v~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~ 596 (764)
T KOG1063|consen 518 VHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTV 596 (764)
T ss_pred hHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceE
Confidence 113457888999999999 999999988654 79999999988888999999999999999999999999999999
Q ss_pred EEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCc--ceeee-eecCCCCCEEEEEE
Q 001352 912 FVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEEL--TCLKQ-WFPISSVPISQATF 987 (1093)
Q Consensus 912 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~--~~~~~-~~~~h~~~v~~~~f 987 (1093)
.+|........... ......|.. -|.++.|+||+.++|+ +.|.+|+||..... +.+.. -...++.+|+.+++
T Consensus 597 sl~~~~~~~~~e~~-fa~~k~HtR---IIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~ 672 (764)
T KOG1063|consen 597 SLYEVQEDIKDEFR-FACLKAHTR---IIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAY 672 (764)
T ss_pred Eeeeeecccchhhh-hccccccce---EEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEe
Confidence 99998664432222 222333432 5899999999999999 68999999999887 55544 23456889999999
Q ss_pred cc-----CCCEEEEEeCCCcEEEEEcCCCce---EEEecc-ccccCCCCCCCccceeEEEeCCC---------CCCEEEE
Q 001352 988 SC-----DCRMVFTSFVDGTLSIHEASNLEV---QCRILS-TAYLRPTTSCLHVYPHAIAAHPL---------KPTQFAV 1049 (1093)
Q Consensus 988 s~-----dg~~l~t~~~dg~v~vwd~~~~~~---~~~~~~-~~~~~~~~~~~~v~~~~~~~~p~---------d~~~l~~ 1049 (1093)
.| .+..+++|-..|.|.+|....-.. ...+.. ...-+...+.+.|. .+.|.|. ....|++
T Consensus 673 ~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~--rl~w~p~~~~~~~~~~~~l~la~ 750 (764)
T KOG1063|consen 673 LPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVN--RLLWRPTCSDDWVEDKEWLNLAV 750 (764)
T ss_pred eccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhh--eeEeccccccccccccceeEEee
Confidence 87 233778888999999999661111 001110 01111112334454 4566653 2245799
Q ss_pred EeCCCcEEEEecC
Q 001352 1050 GLTNGEVYVIEPN 1062 (1093)
Q Consensus 1050 ~~~dg~v~~w~~~ 1062 (1093)
|++|..++++++.
T Consensus 751 ~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 751 GGDDESVRIFNVD 763 (764)
T ss_pred ecccceeEEeecc
Confidence 9999999999874
No 26
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=9.7e-37 Score=283.11 Aligned_cols=294 Identities=16% Similarity=0.273 Sum_probs=251.9
Q ss_pred CceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEc
Q 001352 347 QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAY 426 (1093)
Q Consensus 347 g~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~ 426 (1093)
..-+|++++.|.+|++|...+|.+.++ +....+.|..+...||+++||+++... |++||+
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~qh-vRlyD~ 68 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGNQH-VRLYDL 68 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccCCe-eEEEEc
Confidence 335899999999999999999999886 444678899999999999999997664 999999
Q ss_pred cCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEE
Q 001352 427 HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI 506 (1093)
Q Consensus 427 ~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~ 506 (1093)
.++..- +..++.+|...|+++.|..||+ +++|||.||+++|||++...+.+.++ |..+|+++.++|. ..-|++|
T Consensus 69 ~S~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpn--QteLis~ 142 (311)
T KOG0315|consen 69 NSNNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPN--QTELISG 142 (311)
T ss_pred cCCCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCC--cceEEee
Confidence 998753 5668999999999999999999 89999999999999999977777775 7899999999764 4689999
Q ss_pred ecCCeEEEEEcCCCCceEEe-cCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe------eeeeeecccccC
Q 001352 507 SVDGKIKAWLYDSLGARVDY-DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA------IKRTYQGLQLQH 579 (1093)
Q Consensus 507 ~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~------~~~~~~~~~~~~ 579 (1093)
..+|.|++||+........+ ......|.+++..|||.+++.+.. .|..++|++-++. ++..++.|.
T Consensus 143 dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn----kG~cyvW~l~~~~~~s~l~P~~k~~ah~--- 215 (311)
T KOG0315|consen 143 DQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANN----KGNCYVWRLLNHQTASELEPVHKFQAHN--- 215 (311)
T ss_pred cCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecC----CccEEEEEccCCCccccceEhhheeccc---
Confidence 99999999999987665544 344568999999999999999865 6679999987653 345566666
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceee
Q 001352 580 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD 659 (1093)
Q Consensus 580 ~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 659 (1093)
+.+..+.+||++++|+++|.|.+++||+.++. ....+...++...+..++||.||++|++++.|+..++|++..++.+.
T Consensus 216 ~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~ 294 (311)
T KOG0315|consen 216 GHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVR 294 (311)
T ss_pred ceEEEEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceee
Confidence 88999999999999999999999999999988 33333344445679999999999999999999999999999999999
Q ss_pred ecccccccceeeeec
Q 001352 660 AAGVLSDNLRKLSVN 674 (1093)
Q Consensus 660 ~~~~~~~~i~~~~~~ 674 (1093)
...+|.....|++..
T Consensus 295 qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 295 QYQGHHKAAVCVALN 309 (311)
T ss_pred ecCCcccccEEEEee
Confidence 999998887777654
No 27
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.5e-37 Score=331.85 Aligned_cols=278 Identities=18% Similarity=0.260 Sum_probs=241.3
Q ss_pred cCCchHHHHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeE--------Eeeeeeeec----ccccce
Q 001352 320 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLF--------IRNFKVWDI----GACSML 387 (1093)
Q Consensus 320 ~~~~p~~~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~--------~~~~~~~~~----~~~~~~ 387 (1093)
...+|.-|..++..-...++|+.||+|++ ++|.|..|..|++|.+...+... ......-|+ ..-...
T Consensus 363 ~~~lpSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~ 441 (707)
T KOG0263|consen 363 RNSLPSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSS 441 (707)
T ss_pred CCCCCcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCC
Confidence 56677777888776677999999999998 79999999999999998533211 111001111 111122
Q ss_pred eeeeeecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCc
Q 001352 388 FKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT 467 (1093)
Q Consensus 388 ~~~~~~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~ 467 (1093)
.....+.||+++|..+.|+|+.++|++++.|++|++|.+.+..++. .+.||..+|+++.|+|-|- +++|+|.|++
T Consensus 442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~t 516 (707)
T KOG0263|consen 442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQT 516 (707)
T ss_pred ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCce
Confidence 2334488999999999999999999999999999999999986554 6789999999999999998 8999999999
Q ss_pred EEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEE
Q 001352 468 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 547 (1093)
Q Consensus 468 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 547 (1093)
.++|......+++.+.+|-+.|.|+.|+| +..++++||.|.+||+||..++..+..+.+|.++|.+++|||+|++|++
T Consensus 517 ArLWs~d~~~PlRifaghlsDV~cv~FHP--Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaS 594 (707)
T KOG0263|consen 517 ARLWSTDHNKPLRIFAGHLSDVDCVSFHP--NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLAS 594 (707)
T ss_pred eeeeecccCCchhhhcccccccceEEECC--cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEee
Confidence 99999999999999999999999999977 5579999999999999999999999999999999999999999999999
Q ss_pred EecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 001352 548 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 612 (1093)
Q Consensus 548 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~ 612 (1093)
++. ++.|.+||+.+++++..+.+|. +.|.++.|+.+|..|++|+.|.+|++||+..-.
T Consensus 595 g~e----d~~I~iWDl~~~~~v~~l~~Ht---~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 595 GDE----DGLIKIWDLANGSLVKQLKGHT---GTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred ccc----CCcEEEEEcCCCcchhhhhccc---CceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 976 7789999999999999999997 999999999999999999999999999987533
No 28
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5e-36 Score=283.72 Aligned_cols=295 Identities=16% Similarity=0.188 Sum_probs=248.6
Q ss_pred cccccceEEEEeecC-CceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEE
Q 001352 732 KVKANKISRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA 810 (1093)
Q Consensus 732 ~~~~~~i~~l~~s~~-g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 810 (1093)
.+|.+.|..++..+. ...++.++.|..+.+|++... |...|..... +. +|...|..++
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d-----------------d~~~G~~~r~--~~--GHsH~v~dv~ 70 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD-----------------DIKYGVPVRR--LT--GHSHFVSDVV 70 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC-----------------ccccCceeee--ee--ccceEecceE
Confidence 458999999999887 456777888999999998754 3334443333 33 4999999999
Q ss_pred EccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeeccc--cc
Q 001352 811 LSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG--HS 887 (1093)
Q Consensus 811 ~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~--h~ 887 (1093)
.++||++.++++ |+++++||+.+++..+.|.+|...|.+++|++ |++.+++|+.|.+|.+|+... .+..++.. |+
T Consensus 71 ~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~ 148 (315)
T KOG0279|consen 71 LSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHR 148 (315)
T ss_pred EccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeecc-cEEEEEecCCCc
Confidence 999999999998 89999999999999999999999999999999 899999999999999999985 44444443 38
Q ss_pred CCeEEEEEeCC--CCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE-EeCCeEEEEE
Q 001352 888 KRVTGLVFSDA--LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYE 964 (1093)
Q Consensus 888 ~~V~~l~~s~d--g~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd 964 (1093)
+.|.|+.|+|+ ..+++++|.|++|++||+.+ ++..+.+.+|.. .++.+++||||.++++ +.||.+.+||
T Consensus 149 ~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~-----~~l~~~~~gh~~---~v~t~~vSpDGslcasGgkdg~~~Lwd 220 (315)
T KOG0279|consen 149 EWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN-----CQLRTTFIGHSG---YVNTVTVSPDGSLCASGGKDGEAMLWD 220 (315)
T ss_pred CcEEEEEEcCCCCCcEEEEccCCceEEEEccCC-----cchhhccccccc---cEEEEEECCCCCEEecCCCCceEEEEE
Confidence 89999999998 68999999999999999998 445666777765 8999999999999999 6899999999
Q ss_pred cCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCC
Q 001352 965 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKP 1044 (1093)
Q Consensus 965 ~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~ 1044 (1093)
++.++.+.. .+|...|.+++|+|+.-.|+.+ .+..|+|||++++..+..+.+-..-+ ......+.+++++|++ ||
T Consensus 221 L~~~k~lys--l~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~-s~~~~~~~clslaws~-dG 295 (315)
T KOG0279|consen 221 LNEGKNLYS--LEAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGP-SSKAGDPICLSLAWSA-DG 295 (315)
T ss_pred ccCCceeEe--ccCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhcccccccc-ccccCCcEEEEEEEcC-CC
Confidence 999999664 4578999999999998666655 56679999999999988776433333 2345567889999999 69
Q ss_pred CEEEEEeCCCcEEEEecC
Q 001352 1045 TQFAVGLTNGEVYVIEPN 1062 (1093)
Q Consensus 1045 ~~l~~~~~dg~v~~w~~~ 1062 (1093)
..|.+|..|+.|++|.+.
T Consensus 296 ~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 296 QTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cEEEeeecCCcEEEEEee
Confidence 999999999999999985
No 29
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.1e-35 Score=304.27 Aligned_cols=464 Identities=14% Similarity=0.207 Sum_probs=344.3
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352 393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 472 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 472 (1093)
+..++..|.++.|+|...+++++-.+|.|.||+.++...++ .+.-..-+|.+..|-+--+ ++++|+.|..|+||+
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN 83 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence 44589999999999999999999999999999999987776 5666778999999998877 899999999999999
Q ss_pred CCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCC-CceEEecCCCCceEEEEEcc-CCCEEEEEec
Q 001352 473 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSA-NGRRLFSCGT 550 (1093)
Q Consensus 473 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~ 550 (1093)
..+++.++.|..|...|++++.+|.. .+++++|.|-+|++||++.. .+.+++.+|.+-|.+++|.| |.+.+++++-
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence 99999999999999999999998765 69999999999999999875 45678999999999999999 5678899887
Q ss_pred CCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCC--CEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCce
Q 001352 551 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK--DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 628 (1093)
Q Consensus 551 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 628 (1093)
|++|.+|.+.+..+..++++|. ..|+++.+-+-| .++++|+.|.+++|||.++..+++++.+|.+ .|..
T Consensus 162 ----DrTVKVWslgs~~~nfTl~gHe---kGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~--Nvs~ 232 (794)
T KOG0276|consen 162 ----DRTVKVWSLGSPHPNFTLEGHE---KGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN--NVSF 232 (794)
T ss_pred ----cccEEEEEcCCCCCceeeeccc---cCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc--cceE
Confidence 7779999999999999999998 899999997644 7999999999999999999999999997755 5999
Q ss_pred EEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeeccc
Q 001352 629 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 708 (1093)
Q Consensus 629 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 708 (1093)
++|+|.-..+++|+.||+++||...+-+....+.-..+.
T Consensus 233 v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleR----------------------------------------- 271 (794)
T KOG0276|consen 233 VFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLER----------------------------------------- 271 (794)
T ss_pred EEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCce-----------------------------------------
Confidence 999999999999999999999998876555544433333
Q ss_pred ccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCC
Q 001352 709 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRH 788 (1093)
Q Consensus 709 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (1093)
+.+++..+.+..++.|..+|.+.+=
T Consensus 272 -----------------------------vW~I~~~k~~~~i~vG~Deg~i~v~-------------------------- 296 (794)
T KOG0276|consen 272 -----------------------------VWCIAAHKGDGKIAVGFDEGSVTVK-------------------------- 296 (794)
T ss_pred -----------------------------EEEEeecCCCCeEEEeccCCcEEEE--------------------------
Confidence 3444444444444555544544430
Q ss_pred CCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeC--CeEEEE------EccCceeEE----EECCCCCCeEEEEEcCCC
Q 001352 789 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG--GVISLY------IVMTFKTIL----TIMPPSPTATSLAFNPHD 856 (1093)
Q Consensus 789 ~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d--g~i~iw------d~~~~~~~~----~~~~~~~~i~~l~~s~~d 856 (1093)
-......+..++.|+.+-+... -.+.+- ++..|+.+. .+-...-....++-+| +
T Consensus 297 -------------lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsP-N 362 (794)
T KOG0276|consen 297 -------------LGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSP-N 362 (794)
T ss_pred -------------ccCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCC-C
Confidence 0011112233333332222211 001111 222232221 1111112234678899 8
Q ss_pred CCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccC
Q 001352 857 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL 936 (1093)
Q Consensus 857 ~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 936 (1093)
|++++++ .||.-.||..-..+ ..+.+.-....|++|.+..++--.++.|+++ ...+..+ ....
T Consensus 363 GrfV~Vc-gdGEyiIyTala~R-----nK~fG~~~eFvw~~dsne~avRes~~~vki~--knfke~k-----si~~---- 425 (794)
T KOG0276|consen 363 GRFVVVC-GDGEYIIYTALALR-----NKAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHK-----SIRP---- 425 (794)
T ss_pred CcEEEEe-cCccEEEEEeeehh-----hcccccceeEEEcCCCCeEEEEecCCceEEE--ecceecc-----cccc----
Confidence 9887755 48888888632211 1245566778999998899988888889988 3322111 1110
Q ss_pred CCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 001352 937 APSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1007 (1093)
Q Consensus 937 ~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd 1007 (1093)
-..+.+--.|.+|.+..++.+++||.++++.++.+.. ....+.|+.+|.+++.++.|. .++..
T Consensus 426 ---~~~~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~v----~~k~v~w~d~g~lVai~~d~S-fyil~ 488 (794)
T KOG0276|consen 426 ---DMSAEGIFGGPLLGVRSSDFLCFYDWESGELVRRIEV----TSKHVYWSDNGELVAIAGDDS-FYILK 488 (794)
T ss_pred ---ccceeeecCCceEEEEeCCeEEEEEcccceEEEEEee----ccceeEEecCCCEEEEEecCc-eeEEE
Confidence 0113333456677778899999999999999988543 456789999999988887664 44443
No 30
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-34 Score=311.70 Aligned_cols=583 Identities=16% Similarity=0.226 Sum_probs=401.1
Q ss_pred hccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCC
Q 001352 331 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 410 (1093)
Q Consensus 331 l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~ 410 (1093)
++..+..|..++|+|...+ +.++-.+|.|.+||..-+.++.. +.+|.++|..++|+|++.
T Consensus 5 fEskSsRvKglsFHP~rPw-ILtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qp 64 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPW-ILTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQP 64 (1202)
T ss_pred hhcccccccceecCCCCCE-EEEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCC
Confidence 4456679999999999985 77888999999999999988876 778999999999999999
Q ss_pred EEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeE
Q 001352 411 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 490 (1093)
Q Consensus 411 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~ 490 (1093)
++++|++|..|+||+..+.+++. ++.||.+.|..+.|++.-. +++|+|.|.+|+||++.+++++..+.||...|.
T Consensus 65 lFVSGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVM 139 (1202)
T KOG0292|consen 65 LFVSGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVM 139 (1202)
T ss_pred eEEecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEE
Confidence 99999999999999999987665 7889999999999999877 899999999999999999999999999999999
Q ss_pred EeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeee
Q 001352 491 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 570 (1093)
Q Consensus 491 ~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 570 (1093)
|..|+|..| .++++|-|.+||+||+...+....-.+ ++.-.+.+..+. .-++-....-...
T Consensus 140 cAqFhptED--lIVSaSLDQTVRVWDisGLRkk~~~pg------~~e~~~~~~~~~-----------~dLfg~~DaVVK~ 200 (1202)
T KOG0292|consen 140 CAQFHPTED--LIVSASLDQTVRVWDISGLRKKNKAPG------SLEDQMRGQQGN-----------SDLFGQTDAVVKH 200 (1202)
T ss_pred eeccCCccc--eEEEecccceEEEEeecchhccCCCCC------Cchhhhhccccc-----------hhhcCCcCeeeee
Confidence 999998775 899999999999999875443322111 000001111110 0111111122345
Q ss_pred eeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEE
Q 001352 571 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 650 (1093)
Q Consensus 571 ~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 650 (1093)
.+.||. ..|+-++|+|.-..+++|+.|..|++|.+..-+.-..-...++...|.++-|+|...++++.+.|++|++|
T Consensus 201 VLEGHD---RGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVw 277 (1202)
T KOG0292|consen 201 VLEGHD---RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVW 277 (1202)
T ss_pred eecccc---cccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEE
Confidence 678888 88999999999999999999999999998765543333344556679999999999999999999999999
Q ss_pred EcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCC-----CCCCccceeecccccceecceeeccCcccc
Q 001352 651 ETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDP-----KEDVKPEISVEAENKSEVEKPLFARPSECQ 725 (1093)
Q Consensus 651 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~ 725 (1093)
|+...+.+++++...+..+.++..|.....+.|-..|.+.|.-.- .-.++.+...- |..|+.+|+.+.......
T Consensus 278 Dm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErpa~~v~~n~LfYvk-d~~i~~~d~~t~~d~~v~ 356 (1202)
T KOG0292|consen 278 DMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERPAYAVNGNGLFYVK-DRFIRSYDLRTQKDTAVA 356 (1202)
T ss_pred ecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCceEEEcCCEEEEEc-cceEEeeeccccccceeE
Confidence 999999999999999999999999999999999888888884331 12333343333 788888998775555554
Q ss_pred ccccCccccccceEEEEeecCCceEEEee--ccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCC
Q 001352 726 SLLLPSKVKANKISRLTYNNGGQAIFALA--SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQ 803 (1093)
Q Consensus 726 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~--~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 803 (1093)
.++.+.. ...++.++.++|....++.++ .+|...++.++........ .... . ..
T Consensus 357 ~lr~~g~-~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~------------~~~~-------~----k~ 412 (1202)
T KOG0292|consen 357 SLRRPGT-LWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSD------------GKDV-------K----KG 412 (1202)
T ss_pred eccCCCc-ccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCC------------chhh-------h----cC
Confidence 4443331 335678899999877665553 3467777766554210000 0000 0 11
Q ss_pred CCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeec
Q 001352 804 EAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 883 (1093)
Q Consensus 804 ~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l 883 (1093)
.....+-.+.++-.+..-++..+.+-++.+ +..+.+... .....+-+.. .|.+|+. ....|.+||++..+.+..+
T Consensus 413 tG~~a~fvarNrfavl~k~~~~v~ik~l~N-~vtkkl~~~-~~~~~IF~ag-~g~lll~--~~~~v~lfdvQq~~~~~si 487 (1202)
T KOG0292|consen 413 TGEGALFVARNRFAVLDKSNEQVVIKNLKN-KVTKKLLLP-ESTDDIFYAG-TGNLLLR--SPDSVTLFDVQQKKKVGSI 487 (1202)
T ss_pred CCCceEEEEecceEEEEecCcceEEecccc-hhhhcccCc-ccccceeecc-CccEEEE--cCCeEEEEEeecceEEEEE
Confidence 112222222222222222234444444432 222223222 2344455554 5655543 3456999999988877777
Q ss_pred ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEE
Q 001352 884 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIY 963 (1093)
Q Consensus 884 ~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vw 963 (1093)
+ ...|..+.||+|..+++--+. .+|.|.+.+-. .+...... -+|.+-+|.-+|-+|.+..+.- + |
T Consensus 488 ~--~s~vkyvvws~dm~~vAll~K-h~i~i~~kkL~------l~~sihEt----iriksgawde~gVfiYtT~nHi-k-Y 552 (1202)
T KOG0292|consen 488 K--VSKVKYVVWSNDMSRVALLSK-HTITIADKKLE------LLCSIHET----IRIKSGAWDEDGVFIYTTLNHI-K-Y 552 (1202)
T ss_pred e--cCceeEEEEcCccchhhhccc-ceEEEEecchh------heecchhe----eEeeeceeccCceEEEEehhhh-h-h
Confidence 5 467899999999988887665 45888876541 22222111 1477788888888877643321 0 1
Q ss_pred EcCCcc--eeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 001352 964 EAEELT--CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1011 (1093)
Q Consensus 964 d~~~~~--~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~ 1011 (1093)
-+.+|. .++++ ..++.-.. -.|..+++-..|+.+...+++.-
T Consensus 553 al~~GD~GIikTL----d~~iyitk--v~gn~V~cl~rd~~~~~~~IDpt 596 (1202)
T KOG0292|consen 553 ALENGDSGIIKTL----DKPIYITK--VKGNKVFCLNRDGEIECLTIDPT 596 (1202)
T ss_pred hhccCCcceEEec----ccceEEEE--eeCCEEEEEecCCCeEEEeechH
Confidence 111111 11111 11222222 24667777777888888777654
No 31
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.8e-36 Score=296.98 Aligned_cols=292 Identities=22% Similarity=0.337 Sum_probs=268.1
Q ss_pred HHHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEE
Q 001352 326 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 405 (1093)
Q Consensus 326 ~~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 405 (1093)
+..+.|.||...|+.+-|+|+-. ++++++.|++|++||..+|+.... ++||...|..++|
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~~-------------------LrGHt~sv~di~~ 158 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELERS-------------------LRGHTDSVFDISF 158 (406)
T ss_pred CchhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhhh-------------------hhccccceeEEEE
Confidence 56678889999999999999997 799999999999999999998765 8899999999999
Q ss_pred CCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecC
Q 001352 406 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 485 (1093)
Q Consensus 406 s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h 485 (1093)
+..|++||+++.|-.+++||.++- .++...+.+|...|.+++|-|.|. ++++++.|.+|+.|++.+|-+++++.+|
T Consensus 159 ~a~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~~~h 234 (406)
T KOG0295|consen 159 DASGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTFPGH 234 (406)
T ss_pred ecCccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccceeEEecccceeEEeccCc
Confidence 999999999999999999999873 334446779999999999999998 8999999999999999999999999999
Q ss_pred CCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccC---------------CCEEEEEec
Q 001352 486 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN---------------GRRLFSCGT 550 (1093)
Q Consensus 486 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d---------------~~~l~~~~~ 550 (1093)
...|..+.. ..||.++++++.|.++++|-+.+..+...+..|+.+|.+++|.|. +.++.+++.
T Consensus 235 ~ewvr~v~v--~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~Sr 312 (406)
T KOG0295|consen 235 SEWVRMVRV--NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSR 312 (406)
T ss_pred hHhEEEEEe--cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecc
Confidence 999998887 678999999999999999999999999999999999999999773 236666665
Q ss_pred CCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEE
Q 001352 551 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 630 (1093)
Q Consensus 551 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 630 (1093)
|+.|++||+.+|.++.++.+|. ..|..++|+|.|+||+++.+|+++++||+++++++..++.+.+ -++++.
T Consensus 313 ----DktIk~wdv~tg~cL~tL~ghd---nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~h--fvt~lD 383 (406)
T KOG0295|consen 313 ----DKTIKIWDVSTGMCLFTLVGHD---NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEH--FVTSLD 383 (406)
T ss_pred ----cceEEEEeccCCeEEEEEeccc---ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcc--eeEEEe
Confidence 7789999999999999999999 9999999999999999999999999999999999999998766 489999
Q ss_pred EecCCCEEEEEECCCeEEEEEc
Q 001352 631 FNKNGTLLAVIANENRIKILET 652 (1093)
Q Consensus 631 ~s~~~~~l~~~~~dg~i~iw~~ 652 (1093)
|+.+..++++|+-|.++++|.-
T Consensus 384 fh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 384 FHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred cCCCCceEEeccccceeeeeec
Confidence 9999999999999999999974
No 32
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=6.1e-33 Score=282.89 Aligned_cols=524 Identities=12% Similarity=0.168 Sum_probs=378.2
Q ss_pred eeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcCC
Q 001352 340 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH 419 (1093)
Q Consensus 340 ~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d~ 419 (1093)
.+-+-|.|..+..++ +.+.+++++...+.. +.||+..|.|++.+||.-++|+|-..|
T Consensus 70 Nly~lptgE~vyfvA---~V~Vl~n~ee~~Qr~--------------------y~GH~ddikc~~vHPdri~vatGQ~ag 126 (626)
T KOG2106|consen 70 NLYLLPTGELVYFVA---AVGVLYNWEERSQRH--------------------YLGHNDDIKCMAVHPDRIRVATGQGAG 126 (626)
T ss_pred eeEEccCccEEEEec---cEEEEEeehhhhccc--------------------ccCCCCceEEEeecCCceeeccCcccc
Confidence 345667776333333 456677765533322 678999999999999999999874443
Q ss_pred --------EEEEEEccCCCcccceEEeccccccEEEEEeeCCCCc--EEEEEEcCCCcEEEEECCCCceeEEeecCCCCe
Q 001352 420 --------IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQ--ISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 489 (1093)
Q Consensus 420 --------~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~--l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v 489 (1093)
.+++||..+-..+. .+......|+|++||+-... +..+--+.+..+.|||+..+......+..+..|
T Consensus 127 ~~g~~~~phvriWdsv~L~TL~---V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v 203 (626)
T KOG2106|consen 127 TSGRPLQPHVRIWDSVTLSTLH---VIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVV 203 (626)
T ss_pred cCCCcCCCeeeecccccceeee---eeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceE
Confidence 59999987754343 56667778999999986432 223334566779999999999888888888889
Q ss_pred EEeeecccCCccEEEEEecCCeEEEEEcCCCCceEE---ecCC-CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001352 490 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD---YDAP-GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 565 (1093)
Q Consensus 490 ~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~---~~~~-~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~ 565 (1093)
....|+|... .++.....|.+.+|+++.+..... +..+ ...|.+++|.++|..+- + |.++.|.||+..+
T Consensus 204 ~~a~FHPtd~--nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviT-g----DS~G~i~Iw~~~~ 276 (626)
T KOG2106|consen 204 FLATFHPTDP--NLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVIT-G----DSGGNILIWSKGT 276 (626)
T ss_pred EEEEeccCCC--cEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEe-e----cCCceEEEEeCCC
Confidence 9999988754 355555678999999987765443 2222 25799999999998663 3 3377899999988
Q ss_pred CeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCC
Q 001352 566 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 645 (1093)
Q Consensus 566 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 645 (1093)
.+..+....|. +.|.+++...+|. |++|+.|..|..|| ..-+.++..+.......+..++=...+ +++|+..+
T Consensus 277 ~~~~k~~~aH~---ggv~~L~~lr~Gt-llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTtrN 349 (626)
T KOG2106|consen 277 NRISKQVHAHD---GGVFSLCMLRDGT-LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTTRN 349 (626)
T ss_pred ceEEeEeeecC---CceEEEEEecCcc-EeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCc--EEEeeccc
Confidence 77777766666 9999999999885 55599999999999 455555555555545556665543322 66776665
Q ss_pred eEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCcccc
Q 001352 646 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ 725 (1093)
Q Consensus 646 ~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~ 725 (1093)
.|..=.+.++..+
T Consensus 350 ~iL~Gt~~~~f~~------------------------------------------------------------------- 362 (626)
T KOG2106|consen 350 FILQGTLENGFTL------------------------------------------------------------------- 362 (626)
T ss_pred eEEEeeecCCceE-------------------------------------------------------------------
Confidence 5544333322111
Q ss_pred ccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCC
Q 001352 726 SLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEA 805 (1093)
Q Consensus 726 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 (1093)
...+|......++..|+...+++++.|+.+++|+ ..+ .+|... ...+
T Consensus 363 ----~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k-------------~~wt~~--------------~~d~ 409 (626)
T KOG2106|consen 363 ----TVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHK-------------LEWTKI--------------IEDP 409 (626)
T ss_pred ----EEEecccceeeEEcCCChhheeeccCcceEEEcc--CCc-------------eeEEEE--------------ecCc
Confidence 1123666778888999999999999999999997 111 122211 3567
Q ss_pred eeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc-ceeeec
Q 001352 806 VPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVISKL 883 (1093)
Q Consensus 806 v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~-~~~~~l 883 (1093)
+.|+.|+|.| .+|.|. .|...+.|.++...+..-.. ..++++++|+| +|.+||+|+.|+.|+||.+..+ ....+.
T Consensus 410 ~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp-~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~ 486 (626)
T KOG2106|consen 410 AECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSP-DGAFLAVGSHDNHIYIYRVSANGRKYSRV 486 (626)
T ss_pred eeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcC-CCCEEEEecCCCeEEEEEECCCCcEEEEe
Confidence 8899999999 888887 69999999999665555444 88999999999 9999999999999999998764 333333
Q ss_pred c-cccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeee---------ee---eecCCCcccCCCCceEEEEccCCC
Q 001352 884 E-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC---------RS---LQTPDGVMTLAPSETHIQFHKDQT 950 (1093)
Q Consensus 884 ~-~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~---------~~---~~~~~~~~~~~~~v~~~~~s~dg~ 950 (1093)
. .|..+|+.+.||+|+++|.+.+.|-.|..|.-..-..... .+ .....+ ..+..+..++-|.+.+
T Consensus 487 ~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~--s~~t~i~a~~rs~~~~ 564 (626)
T KOG2106|consen 487 GKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGG--SDGTDINAVARSHCEK 564 (626)
T ss_pred eeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecc--cCCchHHHhhhhhhhh
Confidence 2 2448999999999999999999999999994332211110 00 111111 1113577888889999
Q ss_pred EEEEE-eCCeEEEEEcCCcc--eeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 001352 951 RFLLV-HETHLAIYEAEELT--CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1008 (1093)
Q Consensus 951 ~l~~~-~d~~i~vwd~~~~~--~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~ 1008 (1093)
++|++ ..|+|++|...--+ .....+.+|++.|++++|+.+...|++.+.|.+|..|++
T Consensus 565 ~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 565 LLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred hhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 99997 45899999876433 233446789999999999999999998889999999986
No 33
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=4.1e-35 Score=287.83 Aligned_cols=333 Identities=15% Similarity=0.191 Sum_probs=287.4
Q ss_pred HHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEEC
Q 001352 327 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 406 (1093)
Q Consensus 327 ~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 406 (1093)
.+.+|..|++.|.+++.+|+.+ ++|||+.|....||+..+|..... +.+|++.|+++.||
T Consensus 56 S~~tF~~H~~svFavsl~P~~~-l~aTGGgDD~AflW~~~~ge~~~e-------------------ltgHKDSVt~~~Fs 115 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNN-LVATGGGDDLAFLWDISTGEFAGE-------------------LTGHKDSVTCCSFS 115 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCc-eEEecCCCceEEEEEccCCcceeE-------------------ecCCCCceEEEEEc
Confidence 4567889999999999999776 799999999999999999997765 88999999999999
Q ss_pred CCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCC
Q 001352 407 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 486 (1093)
Q Consensus 407 ~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~ 486 (1093)
.||.+||+|+.+|.|+||+..++.... .+......|.-+.|+|.+. +|+.|+.||.+-+|.+.++...+.+.||.
T Consensus 116 hdgtlLATGdmsG~v~v~~~stg~~~~---~~~~e~~dieWl~WHp~a~--illAG~~DGsvWmw~ip~~~~~kv~~Gh~ 190 (399)
T KOG0296|consen 116 HDGTLLATGDMSGKVLVFKVSTGGEQW---KLDQEVEDIEWLKWHPRAH--ILLAGSTDGSVWMWQIPSQALCKVMSGHN 190 (399)
T ss_pred cCceEEEecCCCccEEEEEcccCceEE---EeecccCceEEEEeccccc--EEEeecCCCcEEEEECCCcceeeEecCCC
Confidence 999999999999999999999987554 4545667788999999888 89999999999999999998899999999
Q ss_pred CCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC-CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001352 487 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 565 (1093)
Q Consensus 487 ~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~ 565 (1093)
.++++=.|.| +|+.++++..||+|++|+..+..+....... .....++.++..+..++.|.. ++.+++-+..+
T Consensus 191 ~~ct~G~f~p--dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~----e~~~~~~~~~s 264 (399)
T KOG0296|consen 191 SPCTCGEFIP--DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNS----EGVACGVNNGS 264 (399)
T ss_pred CCcccccccC--CCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccC----CccEEEEcccc
Confidence 9999999955 6899999999999999999999888877643 446778899999999888875 56688888888
Q ss_pred Ceeeeeeec--------ccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCE
Q 001352 566 GAIKRTYQG--------LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 637 (1093)
Q Consensus 566 ~~~~~~~~~--------~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 637 (1093)
|+.+....+ +......|.++.++..-...++|+.||+|.|||+...++....... ..|..+.|-+ ..+
T Consensus 265 gKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he---~~V~~l~w~~-t~~ 340 (399)
T KOG0296|consen 265 GKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHE---DGVTKLKWLN-TDY 340 (399)
T ss_pred ceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCC---CceEEEEEcC-cch
Confidence 887776663 2211233444555555677889999999999999988887777655 3489999998 789
Q ss_pred EEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecce
Q 001352 638 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKP 716 (1093)
Q Consensus 638 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~ 716 (1093)
|++++.+|.|+.||.++++....+.+|...|.+++++ |+.+++++++.|++.++|+.
T Consensus 341 l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls----------------------~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 341 LLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALS----------------------PQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred heeeccCceEEeeeccccceEEEEecCchheeEEEEc----------------------CCCcEEEEecCCCeEEEEec
Confidence 9999999999999999999999999999999999986 78889999999999999875
No 34
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2e-34 Score=283.07 Aligned_cols=339 Identities=18% Similarity=0.230 Sum_probs=287.1
Q ss_pred EeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEE
Q 001352 437 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 516 (1093)
Q Consensus 437 ~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd 516 (1093)
.|..|+..|.+++.+|+.+ +++||+.|....+|++.+|.....+.+|...|+++.| +.+|.+|++|+.+|.|+||+
T Consensus 59 tF~~H~~svFavsl~P~~~--l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~F--shdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNN--LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSF--SHDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred ehhhcCCceEEEEeCCCCc--eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEE--ccCceEEEecCCCccEEEEE
Confidence 6778999999999999777 8999999999999999999999999999999999999 55789999999999999999
Q ss_pred cCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEE
Q 001352 517 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA 596 (1093)
Q Consensus 517 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~ 596 (1093)
..++.....+......+.-+.|+|.+..|++|+. ++.+.+|.+.++...+.+.||. .++++-.|.|+|+++++
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~----DGsvWmw~ip~~~~~kv~~Gh~---~~ct~G~f~pdGKr~~t 207 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGST----DGSVWMWQIPSQALCKVMSGHN---SPCTCGEFIPDGKRILT 207 (399)
T ss_pred cccCceEEEeecccCceEEEEecccccEEEeecC----CCcEEEEECCCcceeeEecCCC---CCcccccccCCCceEEE
Confidence 9999999999888889999999999999999986 6679999999988899999988 89999999999999999
Q ss_pred EeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCC
Q 001352 597 AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPI 676 (1093)
Q Consensus 597 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~ 676 (1093)
+..||+|++||..+++++..+....+ ....++.++..+..++.|..++.+.+-+..+++.+....+
T Consensus 208 gy~dgti~~Wn~ktg~p~~~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~------------- 273 (399)
T KOG0296|consen 208 GYDDGTIIVWNPKTGQPLHKITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNG------------- 273 (399)
T ss_pred EecCceEEEEecCCCceeEEeccccc-CcCCccccccccceeEeccCCccEEEEccccceEEEecCC-------------
Confidence 99999999999999999998875554 3568899999999999999988887766554432211110
Q ss_pred CceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeecc
Q 001352 677 STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN 756 (1093)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d 756 (1093)
++..+....
T Consensus 274 ---------------------------------------------------------------------~~~~l~~~~-- 282 (399)
T KOG0296|consen 274 ---------------------------------------------------------------------TVPELKPSQ-- 282 (399)
T ss_pred ---------------------------------------------------------------------CCccccccc--
Confidence 000000000
Q ss_pred ceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCce
Q 001352 757 GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFK 835 (1093)
Q Consensus 757 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~ 835 (1093)
......|..+.++..-.+.|+|+ ||+|.|||+.+.+
T Consensus 283 -------------------------------------------e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~ 319 (399)
T KOG0296|consen 283 -------------------------------------------EELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST 319 (399)
T ss_pred -------------------------------------------hhhhhhhhhcccccccchhhcccccceEEEEecccch
Confidence 00223344455555667778887 8999999998877
Q ss_pred eEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEe
Q 001352 836 TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 915 (1093)
Q Consensus 836 ~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd 915 (1093)
....+. |...|+.+.|-+ ..+|++++.+|.|+.||.++|+++..+.||..+|.+++++|+.++++|+|.|++.+|++
T Consensus 320 ~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 320 LRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred hheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence 655554 888899999986 56899999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 001352 916 VD 917 (1093)
Q Consensus 916 ~~ 917 (1093)
+.
T Consensus 397 v~ 398 (399)
T KOG0296|consen 397 VP 398 (399)
T ss_pred cC
Confidence 74
No 35
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3.9e-35 Score=286.19 Aligned_cols=298 Identities=18% Similarity=0.266 Sum_probs=267.8
Q ss_pred CchHHHHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeE
Q 001352 322 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 401 (1093)
Q Consensus 322 ~~p~~~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 401 (1093)
..|-.+.+.+.||-+.|.|+++.|-.. ++++|+.|++|+|||+.+|++..+ +.||-..|.
T Consensus 138 HapwKl~rVi~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lklt-------------------ltGhi~~vr 197 (460)
T KOG0285|consen 138 HAPWKLYRVISGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKLT-------------------LTGHIETVR 197 (460)
T ss_pred cCcceehhhhhhccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEEe-------------------ecchhheee
Confidence 345678889999999999999999987 699999999999999999998876 889999999
Q ss_pred EEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEE
Q 001352 402 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 481 (1093)
Q Consensus 402 ~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~ 481 (1093)
.+++|+--.||.+++.|+.|+.||++..+.++ .+.||-..|.|++..|.-. +|+||+.|.+++|||+++...+..
T Consensus 198 ~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~~ 272 (460)
T KOG0285|consen 198 GVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVHV 272 (460)
T ss_pred eeeecccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEEE
Confidence 99999999999999999999999999998877 6779999999999999988 899999999999999999999999
Q ss_pred eecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEE
Q 001352 482 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 561 (1093)
Q Consensus 482 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iw 561 (1093)
+.||..+|.++.+.+.+ ..+++|+.|++|++||+..++....+..|...+.+++.+|....+++++.+ .|..|
T Consensus 273 l~GH~~~V~~V~~~~~d--pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-----nik~w 345 (460)
T KOG0285|consen 273 LSGHTNPVASVMCQPTD--PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-----NIKQW 345 (460)
T ss_pred ecCCCCcceeEEeecCC--CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-----cceec
Confidence 99999999999886543 579999999999999999999999999999999999999999999998753 39999
Q ss_pred eCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe---cCC---CCCCCceEEEecCC
Q 001352 562 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID---AGG---GLPENPRICFNKNG 635 (1093)
Q Consensus 562 d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~---~~~~v~~v~~s~~~ 635 (1093)
++..|..+..+.+|. ..+.+++...|+ ++++|+++|.+..||.++|-..+... ..+ ....|.+.+|...|
T Consensus 346 ~~p~g~f~~nlsgh~---~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg 421 (460)
T KOG0285|consen 346 KLPEGEFLQNLSGHN---AIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTG 421 (460)
T ss_pred cCCccchhhcccccc---ceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccC
Confidence 999999999988888 889999998774 88999999999999999986655442 111 22457889999999
Q ss_pred CEEEEEECCCeEEEEEcCCC
Q 001352 636 TLLAVIANENRIKILETPES 655 (1093)
Q Consensus 636 ~~l~~~~~dg~i~iw~~~~~ 655 (1093)
..|+++..|.+|++|.-...
T Consensus 422 ~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 422 SRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred ceEEeccCCcceEEEecccc
Confidence 99999999999999986643
No 36
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.2e-33 Score=262.58 Aligned_cols=295 Identities=17% Similarity=0.253 Sum_probs=251.7
Q ss_pred cEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe--eeeeeeccccc
Q 001352 501 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQ 578 (1093)
Q Consensus 501 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~ 578 (1093)
-+|++++.|.+||+|...++.+..++....+.|..+.+.||++.|++++ ...|++||+++++ ++.++.+|.
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-----~qhvRlyD~~S~np~Pv~t~e~h~-- 83 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-----NQHVRLYDLNSNNPNPVATFEGHT-- 83 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-----CCeeEEEEccCCCCCceeEEeccC--
Confidence 5899999999999999999999999999999999999999999999987 4459999999875 588899988
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCcee
Q 001352 579 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV 658 (1093)
Q Consensus 579 ~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 658 (1093)
..|.++.|..+|+++++||+||+++|||++...+.+.+... .+|+++..+|+...|+++..+|.|++||+.+....
T Consensus 84 -kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~---spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~ 159 (311)
T KOG0315|consen 84 -KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN---SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCT 159 (311)
T ss_pred -CceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC---CCcceEEecCCcceEEeecCCCcEEEEEccCCccc
Confidence 89999999999999999999999999999996666666543 56999999999999999999999999999866332
Q ss_pred eecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccce
Q 001352 659 DAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKI 738 (1093)
Q Consensus 659 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i 738 (1093)
..+- |+ ....|
T Consensus 160 ~~li-------------------------------------------------------------------Pe--~~~~i 170 (311)
T KOG0315|consen 160 HELI-------------------------------------------------------------------PE--DDTSI 170 (311)
T ss_pred cccC-------------------------------------------------------------------CC--CCcce
Confidence 2211 11 23568
Q ss_pred EEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEE
Q 001352 739 SRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYL 818 (1093)
Q Consensus 739 ~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l 818 (1093)
.+++..|||..++++...|..++|++..... .+.. .....+ ..|...+..+.+|||+++|
T Consensus 171 ~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~-----------------~s~l-~P~~k~--~ah~~~il~C~lSPd~k~l 230 (311)
T KOG0315|consen 171 QSLTVMPDGSMLAAANNKGNCYVWRLLNHQT-----------------ASEL-EPVHKF--QAHNGHILRCLLSPDVKYL 230 (311)
T ss_pred eeEEEcCCCcEEEEecCCccEEEEEccCCCc-----------------cccc-eEhhhe--ecccceEEEEEECCCCcEE
Confidence 8999999999999999999999999865321 0000 011112 2488999999999999999
Q ss_pred EEEe-CCeEEEEEccCc-eeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEe
Q 001352 819 FSAS-GGVISLYIVMTF-KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFS 896 (1093)
Q Consensus 819 a~~~-dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s 896 (1093)
|+++ |.+++||+.++. +....+.+|...+..++||. |++||++|+.|+.+++|++..++.+....||.....|++..
T Consensus 231 at~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 231 ATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred EeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 9998 799999999987 66778899999999999999 99999999999999999999999999999999888888764
No 37
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.7e-32 Score=294.59 Aligned_cols=498 Identities=16% Similarity=0.201 Sum_probs=356.0
Q ss_pred cCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEEC
Q 001352 394 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 473 (1093)
Q Consensus 394 ~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~ 473 (1093)
...+..|..++|+|...+++++-..|.|++||..-+.++. .+..|.++|..++|+|++. +++|||.|..|+||+.
T Consensus 6 EskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWnY 80 (1202)
T KOG0292|consen 6 ESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWNY 80 (1202)
T ss_pred hcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEec
Confidence 3456789999999999999999999999999999988776 6789999999999999998 8999999999999999
Q ss_pred CCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCC
Q 001352 474 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 553 (1093)
Q Consensus 474 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~ 553 (1093)
.+.+++.++.||-..|+.+.|++.- .+|+++|.|.+|+||++.+.+++..+.+|.+-|.|..|+|....+++++-
T Consensus 81 k~rrclftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSL--- 155 (1202)
T KOG0292|consen 81 KTRRCLFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASL--- 155 (1202)
T ss_pred ccceehhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecc---
Confidence 9999999999999999999997643 69999999999999999999999999999999999999999999999987
Q ss_pred CceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEE---EEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEE
Q 001352 554 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI---LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 630 (1093)
Q Consensus 554 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l---~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 630 (1093)
|.+|++||+..-+....-.+ ++.=.+.+... +-|+.|- -....+.+ +...|+-++
T Consensus 156 -DQTVRVWDisGLRkk~~~pg---------~~e~~~~~~~~~~dLfg~~Da----------VVK~VLEG--HDRGVNwaA 213 (1202)
T KOG0292|consen 156 -DQTVRVWDISGLRKKNKAPG---------SLEDQMRGQQGNSDLFGQTDA----------VVKHVLEG--HDRGVNWAA 213 (1202)
T ss_pred -cceEEEEeecchhccCCCCC---------CchhhhhccccchhhcCCcCe----------eeeeeecc--cccccceEE
Confidence 66799999865333222111 00000011111 1111221 12233444 455799999
Q ss_pred EecCCCEEEEEECCCeEEEEEcCCCc--eeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeeccc
Q 001352 631 FNKNGTLLAVIANENRIKILETPESN--SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 708 (1093)
Q Consensus 631 ~s~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 708 (1093)
|+|.-.++++|++|..|++|.+...+ .+.+.++|.+.|.++.|+ |....+++.+.|
T Consensus 214 fhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfh----------------------p~q~lIlSnsED 271 (1202)
T KOG0292|consen 214 FHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFH----------------------PHQDLILSNSED 271 (1202)
T ss_pred ecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEec----------------------CccceeEecCCC
Confidence 99999999999999999999998664 467889999999999887 567789999999
Q ss_pred ccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCC
Q 001352 709 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRH 788 (1093)
Q Consensus 709 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (1093)
+++++||+......+++.- ..++...++..|..+ +++++.|+.+.+|.++..
T Consensus 272 ksirVwDm~kRt~v~tfrr------endRFW~laahP~lN-LfAAgHDsGm~VFkleRE--------------------- 323 (1202)
T KOG0292|consen 272 KSIRVWDMTKRTSVQTFRR------ENDRFWILAAHPELN-LFAAGHDSGMIVFKLERE--------------------- 323 (1202)
T ss_pred ccEEEEecccccceeeeec------cCCeEEEEEecCCcc-eeeeecCCceEEEEEccc---------------------
Confidence 9999999987776665543 456788999999999 555556666667665432
Q ss_pred CCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEccCcee--EEEECCC---CCCeEEEEEcCCCCCEEEEE
Q 001352 789 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT--ILTIMPP---SPTATSLAFNPHDNNVIAIG 863 (1093)
Q Consensus 789 ~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~--~~~~~~~---~~~i~~l~~s~~d~~~lasg 863 (1093)
.+ +.++ ++..|....+..|+-+|+.+.+. +..++.. ..+..++.++|..+..|++.
T Consensus 324 ---------------rp--a~~v--~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics 384 (1202)
T KOG0292|consen 324 ---------------RP--AYAV--NGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICS 384 (1202)
T ss_pred ---------------Cc--eEEE--cCCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEe
Confidence 12 2233 34445555688999999987543 3334433 36789999999656566655
Q ss_pred eCC-CeEEEEEcCCcceeeecc---c-ccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCC
Q 001352 864 MDD-STILIYNARSSEVISKLE---G-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAP 938 (1093)
Q Consensus 864 ~~d-g~i~iwd~~~~~~~~~l~---~-h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 938 (1093)
..| |.-.++.+..... .... . ......++ |-...++.+---.+..+.+-++.+...+ .++.+.
T Consensus 385 ~~~n~~y~L~~ipk~~~-~~~~~~~~~k~tG~~a~-fvarNrfavl~k~~~~v~ik~l~N~vtk---kl~~~~------- 452 (1202)
T KOG0292|consen 385 NLDNGEYELVQIPKDSD-GVSDGKDVKKGTGEGAL-FVARNRFAVLDKSNEQVVIKNLKNKVTK---KLLLPE------- 452 (1202)
T ss_pred ccCCCeEEEEEecCccc-ccCCchhhhcCCCCceE-EEEecceEEEEecCcceEEecccchhhh---cccCcc-------
Confidence 444 4555665543211 0111 0 11122222 3222233333333556777777653311 122221
Q ss_pred CceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 001352 939 SETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1009 (1093)
Q Consensus 939 ~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~ 1009 (1093)
....+-+..+|.+|+ .....|.+||++.+..+.++. -..|..+.||+|..+++--+. .+|.|.+..
T Consensus 453 ~~~~IF~ag~g~lll-~~~~~v~lfdvQq~~~~~si~---~s~vkyvvws~dm~~vAll~K-h~i~i~~kk 518 (1202)
T KOG0292|consen 453 STDDIFYAGTGNLLL-RSPDSVTLFDVQQKKKVGSIK---VSKVKYVVWSNDMSRVALLSK-HTITIADKK 518 (1202)
T ss_pred cccceeeccCccEEE-EcCCeEEEEEeecceEEEEEe---cCceeEEEEcCccchhhhccc-ceEEEEecc
Confidence 233455555565554 445679999999888877755 357889999999887776654 356666543
No 38
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.3e-33 Score=264.50 Aligned_cols=291 Identities=22% Similarity=0.339 Sum_probs=239.5
Q ss_pred HHhhccCCCCceeeeecCC-CceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEEC
Q 001352 328 AQTLIEGSSSPMSMDFHPV-QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 406 (1093)
Q Consensus 328 ~~~l~~h~~~V~~~~~spd-g~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 406 (1093)
.+++++|++.|+.++|+|- |. +||+|+.|+.|+||+...+.-... +..+-.+|+..|.++||+
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~c---------------k~vld~~hkrsVRsvAws 70 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTC---------------KTVLDDGHKRSVRSVAWS 70 (312)
T ss_pred EEeecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEE---------------EEeccccchheeeeeeec
Confidence 3578899999999999999 86 799999999999999986433221 112245799999999999
Q ss_pred CCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCC---ceeEEee
Q 001352 407 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG---SRTYSFE 483 (1093)
Q Consensus 407 ~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~---~~~~~~~ 483 (1093)
|.|++||++|.|.++.||.-..++ ......+.||...|.|++|+++|. +|+|++.|++|-||.+..+ ++...++
T Consensus 71 p~g~~La~aSFD~t~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL~ 147 (312)
T KOG0645|consen 71 PHGRYLASASFDATVVIWKKEDGE-FECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVLQ 147 (312)
T ss_pred CCCcEEEEeeccceEEEeecCCCc-eeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeeec
Confidence 999999999999999999988654 455668999999999999999999 8999999999999998754 5678889
Q ss_pred cCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCC---CCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001352 484 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS---LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 560 (1093)
Q Consensus 484 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~---~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~i 560 (1093)
.|...|..+.|+|..+ +|++++.|++|++|+-.. -....++.++...|.+++|++.|..|++++. ++.+.|
T Consensus 148 ~HtqDVK~V~WHPt~d--lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd----D~tv~I 221 (312)
T KOG0645|consen 148 EHTQDVKHVIWHPTED--LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD----DGTVSI 221 (312)
T ss_pred cccccccEEEEcCCcc--eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC----CcceEe
Confidence 9999999999998774 999999999999997763 2357788899999999999999999999986 777999
Q ss_pred EeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc------eEEEEecCCCCCCCceEEEecC
Q 001352 561 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ------LLTTIDAGGGLPENPRICFNKN 634 (1093)
Q Consensus 561 wd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~v~~v~~s~~ 634 (1093)
|-..+. +.+ .|...++.+.|. ...|++++.|+.|++|.-...- ++... .+.+...|+++.|+|.
T Consensus 222 w~~~~~-----~~~--~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~-~~aHe~dVNsV~w~p~ 291 (312)
T KOG0645|consen 222 WRLYTD-----LSG--MHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKK-EGAHEVDVNSVQWNPK 291 (312)
T ss_pred eeeccC-----cch--hcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhh-hcccccccceEEEcCC
Confidence 985422 222 124788999998 4579999999999999766421 11111 1223347999999994
Q ss_pred -CCEEEEEECCCeEEEEEcC
Q 001352 635 -GTLLAVIANENRIKILETP 653 (1093)
Q Consensus 635 -~~~l~~~~~dg~i~iw~~~ 653 (1093)
.++|+++++||.+++|.+.
T Consensus 292 ~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 292 VSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCCceeecCCCceEEEEEec
Confidence 7899999999999999864
No 39
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=1.3e-31 Score=273.36 Aligned_cols=523 Identities=14% Similarity=0.198 Sum_probs=374.4
Q ss_pred EEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCC--------cEEEEEC
Q 001352 402 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--------TIKVWDA 473 (1093)
Q Consensus 402 ~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~--------~i~vwd~ 473 (1093)
.+-+-|.|..+.... +.+.+++++... ...+.+|...|.|++.+||.- .+++|-.-| .+++||.
T Consensus 70 Nly~lptgE~vyfvA--~V~Vl~n~ee~~----Qr~y~GH~ddikc~~vHPdri--~vatGQ~ag~~g~~~~phvriWds 141 (626)
T KOG2106|consen 70 NLYLLPTGELVYFVA--AVGVLYNWEERS----QRHYLGHNDDIKCMAVHPDRI--RVATGQGAGTSGRPLQPHVRIWDS 141 (626)
T ss_pred eeEEccCccEEEEec--cEEEEEeehhhh----cccccCCCCceEEEeecCCce--eeccCcccccCCCcCCCeeeeccc
Confidence 355778887766543 345667765522 114669999999999999865 566654433 4999999
Q ss_pred CCCceeEEeecCCCCeEEeeecccCCccEEEEEe--cCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCC-EEEEEec
Q 001352 474 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS--VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR-RLFSCGT 550 (1093)
Q Consensus 474 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~~~~~ 550 (1093)
.+-..++.+......|.+++|++...|.++.... .+..+.+||+..+.........+..+....|.|.+. .+++++
T Consensus 142 v~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~G- 220 (626)
T KOG2106|consen 142 VTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCG- 220 (626)
T ss_pred ccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeC-
Confidence 9999999988888899999999888887776653 455689999998877777777777888999999655 455554
Q ss_pred CCCCceeEEEEeCCCCeeeee---eecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCc
Q 001352 551 SKEGESFLVEWNESEGAIKRT---YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 627 (1093)
Q Consensus 551 ~~~~~~~i~iwd~~~~~~~~~---~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 627 (1093)
.+.++.|+.+.+.+.++ +..+. ...|.+++|.++| .+++|..+|.|.||+..+.+..+....| ...|.
T Consensus 221 ----k~H~~Fw~~~~~~l~k~~~~fek~e--kk~Vl~v~F~eng-dviTgDS~G~i~Iw~~~~~~~~k~~~aH--~ggv~ 291 (626)
T KOG2106|consen 221 ----KGHLYFWTLRGGSLVKRQGIFEKRE--KKFVLCVTFLENG-DVITGDSGGNILIWSKGTNRISKQVHAH--DGGVF 291 (626)
T ss_pred ----CceEEEEEccCCceEEEeecccccc--ceEEEEEEEcCCC-CEEeecCCceEEEEeCCCceEEeEeeec--CCceE
Confidence 67799999998876654 44444 3679999999987 4789999999999999888877776644 45699
Q ss_pred eEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecc
Q 001352 628 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA 707 (1093)
Q Consensus 628 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~ 707 (1093)
+++.-.+|.+|- |+.|..|..||-. -+.++...
T Consensus 292 ~L~~lr~GtllS-GgKDRki~~Wd~~-y~k~r~~e--------------------------------------------- 324 (626)
T KOG2106|consen 292 SLCMLRDGTLLS-GGKDRKIILWDDN-YRKLRETE--------------------------------------------- 324 (626)
T ss_pred EEEEecCccEee-cCccceEEecccc-cccccccc---------------------------------------------
Confidence 999999997665 9999999999922 11111111
Q ss_pred cccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCC
Q 001352 708 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPR 787 (1093)
Q Consensus 708 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1093)
+|+ ..+.|..++-...+ ++.++..+.+..=.++
T Consensus 325 ---------------------lPe--~~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~~---------------------- 357 (626)
T KOG2106|consen 325 ---------------------LPE--QFGPIRTVAEGKGD--ILVGTTRNFILQGTLE---------------------- 357 (626)
T ss_pred ---------------------Cch--hcCCeeEEecCCCc--EEEeeccceEEEeeec----------------------
Confidence 111 12223322221111 4444444443322111
Q ss_pred CCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCC
Q 001352 788 HGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD 866 (1093)
Q Consensus 788 ~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d 866 (1093)
.+..+.. .+|......++.+|+...+++++ |+.+++|+ ..+...+.. ...++.|++|+| .| .+|.|+..
T Consensus 358 ~~f~~~v-----~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhp-sg-~va~Gt~~ 427 (626)
T KOG2106|consen 358 NGFTLTV-----QGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHP-SG-VVAVGTAT 427 (626)
T ss_pred CCceEEE-----EecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccC-cc-eEEEeecc
Confidence 1111111 14788889999999999999887 79999999 444444433 457889999999 77 99999999
Q ss_pred CeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEc
Q 001352 867 STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFH 946 (1093)
Q Consensus 867 g~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 946 (1093)
|...+.|.++...+..-.. ..++++++|+|+|.+||.|+.|+.|.||.++.+.....+ +....+ .+|+.+.||
T Consensus 428 G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r-~~k~~g-----s~ithLDwS 500 (626)
T KOG2106|consen 428 GRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSR-VGKCSG-----SPITHLDWS 500 (626)
T ss_pred ceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEE-eeeecC-----ceeEEeeec
Confidence 9999999998555544443 889999999999999999999999999999876533322 222222 369999999
Q ss_pred cCCCEEEE-EeCCeEEEEEcCCcceee-----------------eeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 001352 947 KDQTRFLL-VHETHLAIYEAEELTCLK-----------------QWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1008 (1093)
Q Consensus 947 ~dg~~l~~-~~d~~i~vwd~~~~~~~~-----------------~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~ 1008 (1093)
+|++++.+ +.|-.|..|....-..+. .....|+..|..++-|.+.+++++|...|.|++|..
T Consensus 501 ~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~y 580 (626)
T KOG2106|consen 501 SDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSY 580 (626)
T ss_pred CCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEcc
Confidence 99999999 778889999443221111 112235677778888889999999999999999998
Q ss_pred CCCceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEec
Q 001352 1009 SNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1061 (1093)
Q Consensus 1009 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~ 1061 (1093)
+--+..+.+. ....|++.|. +++|.-.| ..|++.+.|.+|..|++
T Consensus 581 Pc~s~rA~~h-----e~~ghs~~vt--~V~Fl~~d-~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 581 PCSSPRAPSH-----EYGGHSSHVT--NVAFLCKD-SHLISTGKDTSIMQWRL 625 (626)
T ss_pred ccCCCcccce-----eeccccceeE--EEEEeeCC-ceEEecCCCceEEEEEe
Confidence 8765553332 2223566677 45565534 55666669999999986
No 40
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=8.1e-34 Score=287.52 Aligned_cols=280 Identities=19% Similarity=0.300 Sum_probs=252.6
Q ss_pred CCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEE
Q 001352 335 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 414 (1093)
Q Consensus 335 ~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las 414 (1093)
...|++++|+.+|. +||+|+.||.++||+...+ ++.+ +..|.++|.++.|+.+|.||++
T Consensus 235 nkdVT~L~Wn~~G~-~LatG~~~G~~riw~~~G~-l~~t-------------------l~~HkgPI~slKWnk~G~yilS 293 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGT-LLATGSEDGEARIWNKDGN-LIST-------------------LGQHKGPIFSLKWNKKGTYILS 293 (524)
T ss_pred cCCcceEEecCCCC-eEEEeecCcEEEEEecCch-hhhh-------------------hhccCCceEEEEEcCCCCEEEe
Confidence 35899999999998 7999999999999997654 4433 6679999999999999999999
Q ss_pred EEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeee
Q 001352 415 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 494 (1093)
Q Consensus 415 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~ 494 (1093)
++.|+++.+||..+|+... .+.-|..+-.++.|-.+.. +++++.|+.|+|+.+...+++.++.+|.++|.++.|
T Consensus 294 ~~vD~ttilwd~~~g~~~q---~f~~~s~~~lDVdW~~~~~---F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~ 367 (524)
T KOG0273|consen 294 GGVDGTTILWDAHTGTVKQ---QFEFHSAPALDVDWQSNDE---FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKW 367 (524)
T ss_pred ccCCccEEEEeccCceEEE---eeeeccCCccceEEecCce---EeecCCCceEEEEEecCCCcceeeecccCceEEEEE
Confidence 9999999999999987544 4556888878899988776 899999999999999999999999999999999999
Q ss_pred cccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCC---------CEEEEEecCCCCceeEEEEeCCC
Q 001352 495 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG---------RRLFSCGTSKEGESFLVEWNESE 565 (1093)
Q Consensus 495 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~---------~~l~~~~~~~~~~~~i~iwd~~~ 565 (1093)
.| .+.+|++++.|+++++|.+........+..|...|..+.|+|.| ..+++++. +++|++||+..
T Consensus 368 n~--tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~----dstV~lwdv~~ 441 (524)
T KOG0273|consen 368 NP--TGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF----DSTVKLWDVES 441 (524)
T ss_pred CC--CCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec----CCeEEEEEccC
Confidence 55 56799999999999999999888889999999999999999965 46777765 77899999999
Q ss_pred CeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCC
Q 001352 566 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 645 (1093)
Q Consensus 566 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 645 (1093)
|.++..|..|. .+|++++|+|+|.++++|+.||.|.+|+..+++..+.....+ .|..++|+.+|.++..+..|+
T Consensus 442 gv~i~~f~kH~---~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~---~Ifel~Wn~~G~kl~~~~sd~ 515 (524)
T KOG0273|consen 442 GVPIHTLMKHQ---EPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG---GIFELCWNAAGDKLGACASDG 515 (524)
T ss_pred CceeEeeccCC---CceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC---eEEEEEEcCCCCEEEEEecCC
Confidence 99999999888 999999999999999999999999999999999999987654 489999999999999999999
Q ss_pred eEEEEEcC
Q 001352 646 RIKILETP 653 (1093)
Q Consensus 646 ~i~iw~~~ 653 (1093)
.+.+.|+.
T Consensus 516 ~vcvldlr 523 (524)
T KOG0273|consen 516 SVCVLDLR 523 (524)
T ss_pred CceEEEec
Confidence 99998864
No 41
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.9e-33 Score=269.08 Aligned_cols=292 Identities=18% Similarity=0.234 Sum_probs=253.0
Q ss_pred HHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC
Q 001352 328 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 407 (1093)
Q Consensus 328 ~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~ 407 (1093)
+..|.||+++|..+.|+|+|. ++|+|+.|..|.+|++.....-. ..+++|+++|..+.|.+
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN~------------------~~lkgHsgAVM~l~~~~ 100 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCENF------------------WVLKGHSGAVMELHGMR 100 (338)
T ss_pred hhhcCCCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccce------------------eeeccccceeEeeeecc
Confidence 345779999999999999998 59999999999999975432211 12779999999999999
Q ss_pred CCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCC
Q 001352 408 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 487 (1093)
Q Consensus 408 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~ 487 (1093)
|+..|++++.|.+|+.||+++|+..+ .+++|..-|+++.-+.-|.+ ++.|++.|+++++||+++..+++++. ...
T Consensus 101 d~s~i~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~ky 175 (338)
T KOG0265|consen 101 DGSHILSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NKY 175 (338)
T ss_pred CCCEEEEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-cce
Confidence 99999999999999999999998777 67799999999996666665 78899999999999999999988875 556
Q ss_pred CeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC--
Q 001352 488 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-- 565 (1093)
Q Consensus 488 ~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~-- 565 (1093)
.++++.|. ..+..+++|+-|+.|++||++.......+.+|...|+.+..+|+|.++.+.+- +..+++||.+.
T Consensus 176 qltAv~f~--d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsM----d~tvrvwd~rp~~ 249 (338)
T KOG0265|consen 176 QLTAVGFK--DTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSM----DNTVRVWDVRPFA 249 (338)
T ss_pred eEEEEEec--ccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccc----cceEEEEEecccC
Confidence 78888884 45568999999999999999999999999999999999999999999998875 77899999874
Q ss_pred --Ceeeeeeecccc-cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEE
Q 001352 566 --GAIKRTYQGLQL-QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 642 (1093)
Q Consensus 566 --~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 642 (1093)
..++..+.++.. .+.....++|+|++..+-+|+.|..+++||......+..++++. ..|+++.|+|....+.+++
T Consensus 250 p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~--gsvn~~~Fhp~e~iils~~ 327 (338)
T KOG0265|consen 250 PSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHY--GSVNEVDFHPTEPIILSCS 327 (338)
T ss_pred CCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcc--eeEEEeeecCCCcEEEEec
Confidence 345777887652 12346778999999999999999999999999989998888764 4699999999999999999
Q ss_pred CCCeEEEEE
Q 001352 643 NENRIKILE 651 (1093)
Q Consensus 643 ~dg~i~iw~ 651 (1093)
.|.+|.+=+
T Consensus 328 sdk~i~lge 336 (338)
T KOG0265|consen 328 SDKTIYLGE 336 (338)
T ss_pred cCceeEeec
Confidence 999998744
No 42
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.1e-29 Score=269.63 Aligned_cols=549 Identities=12% Similarity=0.120 Sum_probs=387.1
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccc-cccEEEEEeeCCCCcEEEEEEcCCCcEEEEECC
Q 001352 396 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAH-VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 474 (1093)
Q Consensus 396 h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h-~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~ 474 (1093)
-..+|.++|||.+.+.||.+-.+|.|.||++..+-.... .+.++ ...|.+++|++.++ |++.+.+|.|.-||+.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~--vi~g~~drsIE~L~W~e~~R---LFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEP--VIHGPEDRSIESLAWAEGGR---LFSSGLSGSITEWDLH 98 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeE--EEecCCCCceeeEEEccCCe---EEeecCCceEEEEecc
Confidence 346899999999999999999999999999998754433 45554 45899999996664 9999999999999999
Q ss_pred CCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceE--EecCCCCceEEEEEccCCCEEEEEecCC
Q 001352 475 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV--DYDAPGLGCTRMAYSANGRRLFSCGTSK 552 (1093)
Q Consensus 475 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~--~~~~~~~~v~~~~~s~d~~~l~~~~~~~ 552 (1093)
+++.+..+....+.|++++.++.. ..++.|+.||.+..++........ .+....+++.+++|+|++..++.|+.
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~-- 174 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI-- 174 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc--
Confidence 999999999999999999997765 589999999977777776655544 33445579999999999999999986
Q ss_pred CCceeEEEEeCCCCeeeeeeec----ccc-cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCc
Q 001352 553 EGESFLVEWNESEGAIKRTYQG----LQL-QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 627 (1093)
Q Consensus 553 ~~~~~i~iwd~~~~~~~~~~~~----~~~-~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 627 (1093)
|+.|++||..++..+..... ... ...-|.++.|-.+ ..|++|...|+|.+||...+.+++.+..+. ..|.
T Consensus 175 --Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~--adVl 249 (691)
T KOG2048|consen 175 --DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHD--ADVL 249 (691)
T ss_pred --CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhh--ccee
Confidence 77899999999987763221 110 1234778888755 579999999999999999999999988774 4599
Q ss_pred eEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecc
Q 001352 628 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA 707 (1093)
Q Consensus 628 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~ 707 (1093)
+++..+++.++++++.|+.+.-+...+...-
T Consensus 250 ~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~------------------------------------------------- 280 (691)
T KOG2048|consen 250 ALAVADNEDRVFSAGVDPKIIQYSLTTNKSE------------------------------------------------- 280 (691)
T ss_pred EEEEcCCCCeEEEccCCCceEEEEecCCccc-------------------------------------------------
Confidence 9999999999999999999988877654220
Q ss_pred cccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCC
Q 001352 708 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPR 787 (1093)
Q Consensus 708 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1093)
|-. ..+...|...|.+++..++ .+++++.|..+.+-.....+ ..+-
T Consensus 281 ------wv~-----------~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~--------------~~~h- 326 (691)
T KOG2048|consen 281 ------WVI-----------NSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFK--------------NMDH- 326 (691)
T ss_pred ------eee-----------eccccCCcccceeeeeecc--eEEecceeeEEEEccccccC--------------chhh-
Confidence 100 0011236777888888877 68888888877763322100 0000
Q ss_pred CCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEccCcee---------EEEECCCCCCeEEEEEcCCCCC
Q 001352 788 HGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT---------ILTIMPPSPTATSLAFNPHDNN 858 (1093)
Q Consensus 788 ~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~---------~~~~~~~~~~i~~l~~s~~d~~ 858 (1093)
.+.... ... .-+...|..++++.-....+.+|.+.+... .+-.......|.|.+.|| +|+
T Consensus 327 ----~~~~~~----p~~--~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSP-dg~ 395 (691)
T KOG2048|consen 327 ----RQKNLF----PAS--DRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISP-DGN 395 (691)
T ss_pred ----hccccc----ccc--ceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCC-CCC
Confidence 000000 011 123455666677777778888998866521 222234556899999999 999
Q ss_pred EEEEEeCCCeEEEEEcCCccee-----eecccccCCeEEEEEeCCCCEEEEEe-CCCcEEEEeCCCCceeeeeeeecCCC
Q 001352 859 VIAIGMDDSTILIYNARSSEVI-----SKLEGHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVDGWGIQTCRSLQTPDG 932 (1093)
Q Consensus 859 ~lasg~~dg~i~iwd~~~~~~~-----~~l~~h~~~V~~l~~s~dg~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~ 932 (1093)
++|.+. -..++||.+...-.+ .......-....+.|+-|++.++.++ .+..+.+.++++...+....++.. +
T Consensus 396 ~Ia~st-~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~-~ 473 (691)
T KOG2048|consen 396 LIAIST-VSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ-A 473 (691)
T ss_pred EEEEee-ccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccc-c
Confidence 999776 345888887652221 11222344577889999998888888 778888888887654432222222 1
Q ss_pred cccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcCC
Q 001352 933 VMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSIHEASN 1010 (1093)
Q Consensus 933 ~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~-dg~~l~t~~~dg~v~vwd~~~ 1010 (1093)
.. ..|..++.||||++||+ +..+.|.+|++++++.-.... .-...|+.++|+| +-..|+.+..++.|.-||++.
T Consensus 474 ~~---~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~-rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~ 549 (691)
T KOG2048|consen 474 KC---PSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKV-RLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEA 549 (691)
T ss_pred CC---CcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchh-ccCcceeeeeccccccCcEEEEecCCeEEEEecch
Confidence 11 36999999999999999 789999999999887544321 2247899999995 556788899999999999955
Q ss_pred CceEEEecccc--ccCCCC--CCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecC
Q 001352 1011 LEVQCRILSTA--YLRPTT--SCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1062 (1093)
Q Consensus 1011 ~~~~~~~~~~~--~~~~~~--~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~ 1062 (1093)
.++ .++.... .+|..+ .-..+ .-+.|+|. +...+...+.+-+++.|++
T Consensus 550 ~~l-~~ws~~nt~nlpk~~~~l~~~~--~gisfd~~-n~s~~~~~~a~w~~~id~~ 601 (691)
T KOG2048|consen 550 RNL-TRWSKNNTRNLPKEPKTLIPGI--PGISFDPK-NSSRFIVYDAHWSCLIDFS 601 (691)
T ss_pred hhh-hhhhhccccccccChhhcCCCC--ceEEeCCC-CccEEEEEcCcEEEEEecC
Confidence 442 2221111 111110 01112 23556674 3444445556667777764
No 43
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.7e-33 Score=267.03 Aligned_cols=286 Identities=18% Similarity=0.295 Sum_probs=248.7
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352 393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 472 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 472 (1093)
+.+|++.|..+.|+|+|.+||+|+.|..|.+|++.... .....+++|++.|..+.|.+|+. .+++++.|++|+.||
T Consensus 43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRGWD 118 (338)
T ss_pred cCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceEEEEe
Confidence 78999999999999999999999999999999976543 34447889999999999999999 899999999999999
Q ss_pred CCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001352 473 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 552 (1093)
Q Consensus 473 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~ 552 (1093)
+++|++++.+++|...|+++... ..+-.++.+++.||++++||++......++.. ..+++++.|..++..+.+++-
T Consensus 119 ~~tG~~~rk~k~h~~~vNs~~p~-rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~qv~sggI-- 194 (338)
T KOG0265|consen 119 AETGKRIRKHKGHTSFVNSLDPS-RRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQVISGGI-- 194 (338)
T ss_pred cccceeeehhccccceeeecCcc-ccCCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEecccccceeeccc--
Confidence 99999999999999999999843 23446788999999999999998777666543 347899999999999999987
Q ss_pred CCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC----CceEEEEecCCCCCC--C
Q 001352 553 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK----VQLLTTIDAGGGLPE--N 626 (1093)
Q Consensus 553 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~--v 626 (1093)
++.|.+||++.+....++.||. ++|+.+..+|+|.++++-+.|.++++||++. .+++..+..+.+.-. .
T Consensus 195 --dn~ikvWd~r~~d~~~~lsGh~---DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknl 269 (338)
T KOG0265|consen 195 --DNDIKVWDLRKNDGLYTLSGHA---DTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNL 269 (338)
T ss_pred --cCceeeeccccCcceEEeeccc---CceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhc
Confidence 5559999999999999999999 9999999999999999999999999999875 344666766544333 3
Q ss_pred ceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeec
Q 001352 627 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE 706 (1093)
Q Consensus 627 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~ 706 (1093)
..++|+|+++.+..|+.|..+++||......+..+.+|...|+++.|.| ....+.+++
T Consensus 270 L~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp----------------------~e~iils~~ 327 (338)
T KOG0265|consen 270 LKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHP----------------------TEPIILSCS 327 (338)
T ss_pred ceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecC----------------------CCcEEEEec
Confidence 4678999999999999999999999999999999999999999999985 455567777
Q ss_pred cccccee
Q 001352 707 AENKSEV 713 (1093)
Q Consensus 707 ~d~~i~~ 713 (1093)
.|.+|.+
T Consensus 328 sdk~i~l 334 (338)
T KOG0265|consen 328 SDKTIYL 334 (338)
T ss_pred cCceeEe
Confidence 7776654
No 44
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.9e-33 Score=258.85 Aligned_cols=292 Identities=15% Similarity=0.208 Sum_probs=253.0
Q ss_pred CchHHHHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeE
Q 001352 322 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 401 (1093)
Q Consensus 322 ~~p~~~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 401 (1093)
.+|..-.++|..|.+.|.++.|+-||+| ..+++.|.+|++|+...|.++++ +.+|...|.
T Consensus 4 e~ptkr~~~l~~~qgaV~avryN~dGnY-~ltcGsdrtvrLWNp~rg~likt-------------------YsghG~EVl 63 (307)
T KOG0316|consen 4 ELPTKRLSILDCAQGAVRAVRYNVDGNY-CLTCGSDRTVRLWNPLRGALIKT-------------------YSGHGHEVL 63 (307)
T ss_pred cCcchhceeecccccceEEEEEccCCCE-EEEcCCCceEEeecccccceeee-------------------ecCCCceee
Confidence 4556667889999999999999999997 77778899999999999999987 889999999
Q ss_pred EEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCC--Ccee
Q 001352 402 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT--GSRT 479 (1093)
Q Consensus 402 ~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~--~~~~ 479 (1093)
.++.+.|...+++|+.|..|.+||+++|+.++ .+.+|.+.|+.++|+.+.. .+++|+.|.++++||-++ -+++
T Consensus 64 D~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePi 138 (307)
T KOG0316|consen 64 DAALSSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPI 138 (307)
T ss_pred eccccccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCcc
Confidence 99999999999999999999999999998777 7889999999999999998 999999999999999875 4778
Q ss_pred EEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEE
Q 001352 480 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 559 (1093)
Q Consensus 480 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~ 559 (1093)
+.+......|.++.+ .+..|++|+.||+++.||++.+..... ..+.+|++++|++|++..++++. ++.++
T Consensus 139 Qildea~D~V~Si~v----~~heIvaGS~DGtvRtydiR~G~l~sD--y~g~pit~vs~s~d~nc~La~~l----~stlr 208 (307)
T KOG0316|consen 139 QILDEAKDGVSSIDV----AEHEIVAGSVDGTVRTYDIRKGTLSSD--YFGHPITSVSFSKDGNCSLASSL----DSTLR 208 (307)
T ss_pred chhhhhcCceeEEEe----cccEEEeeccCCcEEEEEeecceeehh--hcCCcceeEEecCCCCEEEEeec----cceee
Confidence 889888899999977 346799999999999999998765443 34568999999999999998876 67799
Q ss_pred EEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEE
Q 001352 560 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 639 (1093)
Q Consensus 560 iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 639 (1093)
+.|-.+|++++.++||...+..+. ++++.....+++|++||.|++||+.....+..++.+.. ..+..++++|....++
T Consensus 209 LlDk~tGklL~sYkGhkn~eykld-c~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~-v~v~dl~~hp~~~~f~ 286 (307)
T KOG0316|consen 209 LLDKETGKLLKSYKGHKNMEYKLD-CCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVST-VIVTDLSCHPTMDDFI 286 (307)
T ss_pred ecccchhHHHHHhcccccceeeee-eeecccceeEEeccCCceEEEEEeccceeeeeeccCCc-eeEEeeecccCcccee
Confidence 999999999999999984444443 45666778999999999999999999999999887654 3478999999877777
Q ss_pred EEECCCeEEEEE
Q 001352 640 VIANENRIKILE 651 (1093)
Q Consensus 640 ~~~~dg~i~iw~ 651 (1093)
++.. +.+..|.
T Consensus 287 ~A~~-~~~~~~~ 297 (307)
T KOG0316|consen 287 TATG-HGDLFWY 297 (307)
T ss_pred EecC-Cceecee
Confidence 7765 3455554
No 45
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.8e-34 Score=286.87 Aligned_cols=283 Identities=22% Similarity=0.326 Sum_probs=248.9
Q ss_pred CCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEE
Q 001352 335 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 414 (1093)
Q Consensus 335 ~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las 414 (1093)
+..|..|.|.|+|++ |++|+..|.+.+|+..+- +|+ .++..|..+|.++.||++|.++++
T Consensus 96 kc~V~~v~WtPeGRR-Lltgs~SGEFtLWNg~~f------nFE-------------tilQaHDs~Vr~m~ws~~g~wmiS 155 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRR-LLTGSQSGEFTLWNGTSF------NFE-------------TILQAHDSPVRTMKWSHNGTWMIS 155 (464)
T ss_pred ccceeeEEEcCCCce-eEeecccccEEEecCcee------eHH-------------HHhhhhcccceeEEEccCCCEEEE
Confidence 448999999999997 889999999999997432 221 227789999999999999999999
Q ss_pred EEcCCEEEEEEccCCCcccceEEecc-ccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEee
Q 001352 415 AYSKHIVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC 493 (1093)
Q Consensus 415 ~~~d~~i~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~ 493 (1093)
|+.+|.|++|+..-.. ++ .+.+ |...|++++|||+.. .++|++.||+|+|||....+.-..+.+|.-.|.++.
T Consensus 156 gD~gG~iKyWqpnmnn-Vk---~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvd 229 (464)
T KOG0284|consen 156 GDKGGMIKYWQPNMNN-VK---IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVD 229 (464)
T ss_pred cCCCceEEecccchhh-hH---HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCcceec
Confidence 9999999999987643 22 3344 558999999999888 799999999999999999998889999999999999
Q ss_pred ecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeee
Q 001352 494 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 573 (1093)
Q Consensus 494 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 573 (1093)
|+|.. .+|+++++|..|++||.+++.++.++..|...|..+.|+|++++|++++. |..++++|+++.+.+.+++
T Consensus 230 WHP~k--gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk----D~~~kv~DiR~mkEl~~~r 303 (464)
T KOG0284|consen 230 WHPTK--GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK----DQSCKVFDIRTMKELFTYR 303 (464)
T ss_pred cCCcc--ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccC----CceEEEEehhHhHHHHHhh
Confidence 98876 48999999999999999999999999999999999999999999999986 6679999999999999999
Q ss_pred cccccCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEc
Q 001352 574 GLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 652 (1093)
Q Consensus 574 ~~~~~~~~v~~v~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 652 (1093)
+|. ..+.++.|+|-.. .+.+|+.||.|..|.+...+++..+.. .+...|.+++|+|-|..|++|+.|.++++|..
T Consensus 304 ~Hk---kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~-AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 304 GHK---KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP-AHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred cch---hhheeeccccccccceeeccCCCceEEEeccccccccCCCc-ccccceeeeeccccceeEeecCCCcceeeecc
Confidence 998 8999999999765 455699999999999986666666543 33457999999999999999999999999986
Q ss_pred C
Q 001352 653 P 653 (1093)
Q Consensus 653 ~ 653 (1093)
.
T Consensus 380 ~ 380 (464)
T KOG0284|consen 380 N 380 (464)
T ss_pred C
Confidence 5
No 46
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.9e-33 Score=274.54 Aligned_cols=285 Identities=20% Similarity=0.286 Sum_probs=263.6
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352 393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 472 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 472 (1093)
+.+|..+|+.+-|+|+-...++++.|++|++||..+|+..+ .++||.+.|.+++|+..|+ ++++++.|-.+++||
T Consensus 104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~---~LrGHt~sv~di~~~a~Gk--~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER---SLRGHTDSVFDISFDASGK--YLATCSSDLSAKLWD 178 (406)
T ss_pred hhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh---hhhccccceeEEEEecCcc--EEEecCCccchhhee
Confidence 67899999999999999999999999999999999998755 7889999999999999999 899999999999999
Q ss_pred CCC-CceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecC
Q 001352 473 AVT-GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 551 (1093)
Q Consensus 473 ~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~ 551 (1093)
.++ -++++.+.+|...|.+++|.|.+ .++++++.|.+|+.|+++++-++.++.+|...|..+..+.||..+++++.
T Consensus 179 ~~~~~~c~ks~~gh~h~vS~V~f~P~g--d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~- 255 (406)
T KOG0295|consen 179 FDTFFRCIKSLIGHEHGVSSVFFLPLG--DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN- 255 (406)
T ss_pred HHHHHHHHHHhcCcccceeeEEEEecC--CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCC-
Confidence 887 67888899999999999998765 69999999999999999999999999999999999999999999999986
Q ss_pred CCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCC---------------CCEEEEEeCCCcEEEEECCCCceEEE
Q 001352 552 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA---------------KDQILAAGDDHVIKIWDMNKVQLLTT 616 (1093)
Q Consensus 552 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~---------------~~~l~~~~~dg~i~iwd~~~~~~~~~ 616 (1093)
+..|++|-..++++...+..|+ .+|.+++|.|. ++++.+++.|++|++||+.++.++.+
T Consensus 256 ---dqtl~vW~~~t~~~k~~lR~hE---h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~t 329 (406)
T KOG0295|consen 256 ---DQTLRVWVVATKQCKAELREHE---HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFT 329 (406)
T ss_pred ---CceEEEEEeccchhhhhhhccc---cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEE
Confidence 6779999999999999999988 89999999763 25888999999999999999999999
Q ss_pred EecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCC
Q 001352 617 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK 696 (1093)
Q Consensus 617 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s 696 (1093)
+.+|. ..|..++|+|.|++|+++.+|+++++||+.+.++...+..|..-++++.|.
T Consensus 330 L~ghd--nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh---------------------- 385 (406)
T KOG0295|consen 330 LVGHD--NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFH---------------------- 385 (406)
T ss_pred Eeccc--ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecC----------------------
Confidence 98775 469999999999999999999999999999999999999999999988886
Q ss_pred CCCccceeecccccceecc
Q 001352 697 EDVKPEISVEAENKSEVEK 715 (1093)
Q Consensus 697 ~d~~~l~s~~~d~~i~~w~ 715 (1093)
.+..++++|+-|.++++|.
T Consensus 386 ~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 386 KTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred CCCceEEeccccceeeeee
Confidence 3445889999999999996
No 47
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.5e-32 Score=311.16 Aligned_cols=294 Identities=21% Similarity=0.352 Sum_probs=255.5
Q ss_pred HHhhccC-CCCceeeeecCCCceEEEEEccCCcEEEEecCCCc--eeEEeeeeeeecccccceeeeeeecCCCCCeEEEE
Q 001352 328 AQTLIEG-SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ--KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 404 (1093)
Q Consensus 328 ~~~l~~h-~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 404 (1093)
.+++.+| ...|.|+.|||||++ +++++.|+.+++|+..+++ .+.. +.+|...|..++
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~-l~~~~~~~~i~~~~~~~~~~~~~~~-------------------l~~h~~~v~~~~ 210 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRA-LAAASSDGLIRIWKLEGIKSNLLRE-------------------LSGHTRGVSDVA 210 (456)
T ss_pred eeeecccccCceEEEEEcCCCCe-EEEccCCCcEEEeecccccchhhcc-------------------ccccccceeeeE
Confidence 4455554 779999999999996 9999999999999997776 4432 578999999999
Q ss_pred ECCCCCEEEEEEcCCEEEEEEcc-CCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEee
Q 001352 405 WSPDGSLLGVAYSKHIVQLYAYH-GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 483 (1093)
Q Consensus 405 ~s~dg~~las~~~d~~i~iwd~~-~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~ 483 (1093)
|+|||+++++++.|++|+|||+. .+..++ ++.+|...|++++|+|+|+ ++++|+.|++|+|||+.+++++..+.
T Consensus 211 fs~d~~~l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~ 285 (456)
T KOG0266|consen 211 FSPDGSYLLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLK 285 (456)
T ss_pred ECCCCcEEEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeee
Confidence 99999999999999999999994 434444 7889999999999999997 89999999999999999999999999
Q ss_pred cCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCC--ceEEecCCCC--ceEEEEEccCCCEEEEEecCCCCceeEE
Q 001352 484 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGL--GCTRMAYSANGRRLFSCGTSKEGESFLV 559 (1093)
Q Consensus 484 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~--~v~~~~~s~d~~~l~~~~~~~~~~~~i~ 559 (1093)
+|...|.+++| .+++.+|++++.||.|++||+.++. ....+..+.. .++++.|+|++.++++++. ++.+.
T Consensus 286 ~hs~~is~~~f--~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~----d~~~~ 359 (456)
T KOG0266|consen 286 GHSDGISGLAF--SPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL----DRTLK 359 (456)
T ss_pred ccCCceEEEEE--CCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC----CCeEE
Confidence 99999999999 5577899999999999999999988 3445544443 5999999999999999986 66799
Q ss_pred EEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEE
Q 001352 560 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 639 (1093)
Q Consensus 560 iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 639 (1093)
+||+..+.....+.+|......+.+...++.+.++++|+.|+.|++||..++..+..+..+. ...+..++++|..++++
T Consensus 360 ~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~ 438 (456)
T KOG0266|consen 360 LWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTENLIA 438 (456)
T ss_pred EEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcCeee
Confidence 99999999999999988321245556668889999999999999999999999998888775 45688999999999999
Q ss_pred EEE--CCCeEEEEEcC
Q 001352 640 VIA--NENRIKILETP 653 (1093)
Q Consensus 640 ~~~--~dg~i~iw~~~ 653 (1093)
+++ .|+.+++|...
T Consensus 439 s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 439 SSSFEGDGLIRLWKYD 454 (456)
T ss_pred ecCcCCCceEEEecCC
Confidence 998 68999999764
No 48
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.7e-33 Score=276.70 Aligned_cols=292 Identities=16% Similarity=0.177 Sum_probs=250.5
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352 393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 472 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 472 (1093)
+..|.+.|..+.||++|+|||+++.|.+..+|++.....++...++.+|..+|..+.||||.+ +|++|+.|..+.+||
T Consensus 220 l~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~~~lwD 297 (519)
T KOG0293|consen 220 LQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEVLSLWD 297 (519)
T ss_pred HhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHheeecc
Confidence 778999999999999999999999999999999987776777778999999999999999999 899999999999999
Q ss_pred CCCCceeEEee-cCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecC
Q 001352 473 AVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 551 (1093)
Q Consensus 473 ~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~ 551 (1093)
+.+|.+.+.+. +|...+.+++|.| ||..+++|+.|+.+..||++......--......|.+++.++||+++++...
T Consensus 298 v~tgd~~~~y~~~~~~S~~sc~W~p--Dg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~- 374 (519)
T KOG0293|consen 298 VDTGDLRHLYPSGLGFSVSSCAWCP--DGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTV- 374 (519)
T ss_pred CCcchhhhhcccCcCCCcceeEEcc--CCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEec-
Confidence 99999988774 3567889999954 7788999999999999998764422222223356899999999999998876
Q ss_pred CCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEE
Q 001352 552 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 631 (1093)
Q Consensus 552 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 631 (1093)
+..|++++..+.........+ .+|++.+++.+++++++.-.+..+.+||++..+.+..+.++.....+..-||
T Consensus 375 ---d~~i~l~~~e~~~dr~lise~----~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCF 447 (519)
T KOG0293|consen 375 ---DKKIRLYNREARVDRGLISEE----QPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCF 447 (519)
T ss_pred ---ccceeeechhhhhhhcccccc----CceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEecc
Confidence 666999998877665544443 5899999999999999999999999999998888888777655444555566
Q ss_pred ec-CCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeeccccc
Q 001352 632 NK-NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK 710 (1093)
Q Consensus 632 s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~ 710 (1093)
.. +..++++|+.|+.|+||+..+++++..+.||...+++++++| .+..++|+++.||+
T Consensus 448 gg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP---------------------~~p~m~ASasDDgt 506 (519)
T KOG0293|consen 448 GGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNP---------------------ADPEMFASASDDGT 506 (519)
T ss_pred CCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCC---------------------CCHHHhhccCCCCe
Confidence 54 568999999999999999999999999999999999999996 45677999999999
Q ss_pred ceeccee
Q 001352 711 SEVEKPL 717 (1093)
Q Consensus 711 i~~w~~~ 717 (1093)
||+|-..
T Consensus 507 IRIWg~~ 513 (519)
T KOG0293|consen 507 IRIWGPS 513 (519)
T ss_pred EEEecCC
Confidence 9999864
No 49
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=7.7e-34 Score=289.21 Aligned_cols=296 Identities=16% Similarity=0.253 Sum_probs=254.1
Q ss_pred CchHHHHHhhccCCCCceeeeecC-CCceEEEEEccCCcEEEEecCC-CceeEEeeeeeeecccccceeeeeeecCCCCC
Q 001352 322 DFPKTVAQTLIEGSSSPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 399 (1093)
Q Consensus 322 ~~p~~~~~~l~~h~~~V~~~~~sp-dg~~llasg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 399 (1093)
-+|+..+.++.||+..|+++.|.| .+ .||++|+.|+.|+||++-. ++++++ +.||..+
T Consensus 201 ~~Pkk~~~~~~gH~kgvsai~~fp~~~-hLlLS~gmD~~vklW~vy~~~~~lrt-------------------f~gH~k~ 260 (503)
T KOG0282|consen 201 YLPKKLSHNLSGHTKGVSAIQWFPKKG-HLLLSGGMDGLVKLWNVYDDRRCLRT-------------------FKGHRKP 260 (503)
T ss_pred eccHhheeeccCCccccchhhhcccee-eEEEecCCCceEEEEEEecCcceehh-------------------hhcchhh
Confidence 357899999999999999999999 66 4899999999999999977 777766 7799999
Q ss_pred eEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCcee
Q 001352 400 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 479 (1093)
Q Consensus 400 V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~ 479 (1093)
|..++|+++|..+.+++.|+.|++||+++|+++.. +. ....++|+.|.||+.+ .+++|+.|+.|+.||+++++.+
T Consensus 261 Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~---f~-~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvv 335 (503)
T KOG0282|consen 261 VRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSR---FH-LDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVV 335 (503)
T ss_pred hhhhhccccCCeeeeeecceeeeeeccccceEEEE---Ee-cCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHH
Confidence 99999999999999999999999999999987653 22 3446899999999955 7888999999999999999999
Q ss_pred EEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEE-ecCCCCceEEEEEccCCCEEEEEecCCCCceeE
Q 001352 480 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 558 (1093)
Q Consensus 480 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i 558 (1093)
+++..|-+.|..+.|. +++..+++.+.|+++++|+.+....... .........++..+|++.++++-+. ++.|
T Consensus 336 qeYd~hLg~i~~i~F~--~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~----dN~i 409 (503)
T KOG0282|consen 336 QEYDRHLGAILDITFV--DEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM----DNYI 409 (503)
T ss_pred HHHHhhhhheeeeEEc--cCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc----CceE
Confidence 9999999999999995 4678999999999999999987665543 3334456788999999999998765 6778
Q ss_pred EEEeCCCC---eeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEec-C
Q 001352 559 VEWNESEG---AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-N 634 (1093)
Q Consensus 559 ~iwd~~~~---~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~ 634 (1093)
.++.+... ...+.+.||... +.-..+.|||||.+|++|+.||.+.+||.++-+++..+..+. ..+..+.|+| .
T Consensus 410 ~ifs~~~~~r~nkkK~feGh~va-Gys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~--~~ci~v~wHP~e 486 (503)
T KOG0282|consen 410 AIFSTVPPFRLNKKKRFEGHSVA-GYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHD--QPCIGVDWHPVE 486 (503)
T ss_pred EEEecccccccCHhhhhcceecc-CceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCC--cceEEEEecCCC
Confidence 88876532 345667787632 445678999999999999999999999999999999998773 4588999999 4
Q ss_pred CCEEEEEECCCeEEEEE
Q 001352 635 GTLLAVIANENRIKILE 651 (1093)
Q Consensus 635 ~~~l~~~~~dg~i~iw~ 651 (1093)
...+|+++.+|.|++|+
T Consensus 487 ~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 487 PSKVATCGWDGLIKIWD 503 (503)
T ss_pred cceeEecccCceeEecC
Confidence 66899999999999996
No 50
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=4.2e-32 Score=265.03 Aligned_cols=292 Identities=14% Similarity=0.233 Sum_probs=256.7
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352 393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 472 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 472 (1093)
+.+|.+.|.|+++-|-.+++++|+.|++|+|||+.+|+... ++.||-..|..+++|+-.. ++++++.|+.|+.||
T Consensus 147 i~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 147 ISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKCWD 221 (460)
T ss_pred hhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEEEe
Confidence 77899999999999999999999999999999999997544 7889999999999999877 899999999999999
Q ss_pred CCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001352 473 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 552 (1093)
Q Consensus 473 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~ 552 (1093)
++..+.++.+.||-..|++++.+|.- ..|++|+.|.++++||+++...+..+.+|..+|..+.+.|-.-.+++|+.
T Consensus 222 Le~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~-- 297 (460)
T KOG0285|consen 222 LEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH-- 297 (460)
T ss_pred chhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC--
Confidence 99999999999999999999998866 48999999999999999999999999999999999999998889999986
Q ss_pred CCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEe
Q 001352 553 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 632 (1093)
Q Consensus 553 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 632 (1093)
|..|++||+..|+...++..|. ..+.+++.+|....+++++.|. |+-|++..|..+..+..+. ..+++++.+
T Consensus 298 --D~tvrlWDl~agkt~~tlt~hk---ksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~--~iintl~~n 369 (460)
T KOG0285|consen 298 --DSTVRLWDLRAGKTMITLTHHK---KSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHN--AIINTLSVN 369 (460)
T ss_pred --CceEEEeeeccCceeEeeeccc---ceeeEEecCCchhhhhccCCcc-ceeccCCccchhhcccccc--ceeeeeeec
Confidence 7789999999999999988887 8999999999988888888775 8999999999998877664 458889888
Q ss_pred cCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccce
Q 001352 633 KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 712 (1093)
Q Consensus 633 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~ 712 (1093)
.|| ++++|+++|.+..||.+++..++.......+ |+
T Consensus 370 sD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqp-------------------------------------GS------ 405 (460)
T KOG0285|consen 370 SDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQP-------------------------------------GS------ 405 (460)
T ss_pred cCc-eEEEcCCceEEEEEecCcCcccccccccccC-------------------------------------Cc------
Confidence 876 7889999999999999988655544311000 00
Q ss_pred ecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeee
Q 001352 713 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 764 (1093)
Q Consensus 713 ~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~ 764 (1093)
......|.+.+|...|.+|+++..|.+|++|.-
T Consensus 406 -------------------l~sEagI~as~fDktg~rlit~eadKtIk~~ke 438 (460)
T KOG0285|consen 406 -------------------LESEAGIFASCFDKTGSRLITGEADKTIKMYKE 438 (460)
T ss_pred -------------------cccccceeEEeecccCceEEeccCCcceEEEec
Confidence 013456888899999999999999999999974
No 51
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.4e-28 Score=261.18 Aligned_cols=547 Identities=16% Similarity=0.159 Sum_probs=376.7
Q ss_pred CCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeec-CCCCCeEEEEECCCCCEEE
Q 001352 335 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVR-DPGVSVNRVVWSPDGSLLG 413 (1093)
Q Consensus 335 ~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~s~dg~~la 413 (1093)
..+|.++|||.+.+. ||.+-.+|.|.||++..+=... .++. +....|.+++|+ +|.+|.
T Consensus 25 Ps~I~slA~s~kS~~-lAvsRt~g~IEiwN~~~~w~~~------------------~vi~g~~drsIE~L~W~-e~~RLF 84 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQ-LAVSRTDGNIEIWNLSNNWFLE------------------PVIHGPEDRSIESLAWA-EGGRLF 84 (691)
T ss_pred ccceEEEEEeccCCc-eeeeccCCcEEEEccCCCceee------------------EEEecCCCCceeeEEEc-cCCeEE
Confidence 349999999999985 8999999999999998753322 1233 345789999999 566778
Q ss_pred EEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeE--EeecCCCCeEE
Q 001352 414 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY--SFEGHGAPVYS 491 (1093)
Q Consensus 414 s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~--~~~~h~~~v~~ 491 (1093)
+.+.+|.|.-||+.+++... .+....+.|++++.+|.+. .++.|+.||.+...+...++..+ .|....+.|.+
T Consensus 85 S~g~sg~i~EwDl~~lk~~~---~~d~~gg~IWsiai~p~~~--~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLs 159 (691)
T KOG2048|consen 85 SSGLSGSITEWDLHTLKQKY---NIDSNGGAIWSIAINPENT--ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLS 159 (691)
T ss_pred eecCCceEEEEecccCceeE---EecCCCcceeEEEeCCccc--eEEeecCCceEEEEecCCceEEEEeecccccceEEE
Confidence 88899999999999987555 6667888999999999998 78999999988888888877654 34456688999
Q ss_pred eeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC--------CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001352 492 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA--------PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 563 (1093)
Q Consensus 492 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--------~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 563 (1093)
+.|. +++..+++|+.||.|++||...+........ ...-|.++.|-.++ .+++| |..|.|..||.
T Consensus 160 lsw~--~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sg----DS~G~V~FWd~ 232 (691)
T KOG2048|consen 160 LSWN--PTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASG----DSAGTVTFWDS 232 (691)
T ss_pred EEec--CCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEe----cCCceEEEEcc
Confidence 9985 4667899999999999999998887662211 12236777777555 45555 34788999999
Q ss_pred CCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--EEEEecCCCCCCCceEEEecCCCEEEEE
Q 001352 564 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL--LTTIDAGGGLPENPRICFNKNGTLLAVI 641 (1093)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 641 (1093)
..|.+++.+..|. ..|.+++..++++++++++.|+.|.-+...+++. +.......+...+.+++..++ .+++|
T Consensus 233 ~~gTLiqS~~~h~---adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sg 307 (691)
T KOG2048|consen 233 IFGTLIQSHSCHD---ADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISG 307 (691)
T ss_pred cCcchhhhhhhhh---cceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEec
Confidence 9999999998888 9999999999999999999999999998876643 222222233346899998877 89999
Q ss_pred ECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccC
Q 001352 642 ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARP 721 (1093)
Q Consensus 642 ~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~ 721 (1093)
+.|..+.+-....... ..|... ...|...... ....+++..-..+..+.+|.+.....
T Consensus 308 G~d~~l~i~~s~~~~~----~~h~~~----~~~p~~~~v~--------------~a~~~~L~~~w~~h~v~lwrlGS~~~ 365 (691)
T KOG2048|consen 308 GRDFTLAICSSREFKN----MDHRQK----NLFPASDRVS--------------VAPENRLLVLWKAHGVDLWRLGSVIL 365 (691)
T ss_pred ceeeEEEEccccccCc----hhhhcc----ccccccceee--------------cCccceEEEEeccccccceeccCccc
Confidence 9999888765543111 111100 0011111110 11123333444456667777654422
Q ss_pred c------cccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeec
Q 001352 722 S------ECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVN 795 (1093)
Q Consensus 722 ~------~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (1093)
. ....+.. .....|.+.++||+|++++.+.- ...++|.++.... +++-.+.
T Consensus 366 ~g~~~~~~Llkl~~---k~~~nIs~~aiSPdg~~Ia~st~-~~~~iy~L~~~~~-----------vk~~~v~-------- 422 (691)
T KOG2048|consen 366 QGEYNYIHLLKLFT---KEKENISCAAISPDGNLIAISTV-SRTKIYRLQPDPN-----------VKVINVD-------- 422 (691)
T ss_pred ccccChhhheeeec---CCccceeeeccCCCCCEEEEeec-cceEEEEeccCcc-----------eeEEEec--------
Confidence 1 1112222 24567999999999997666554 4677887765321 0110000
Q ss_pred cCCCCCCCCCeeEEEEccCCCEEEEEe--CCeEEEEEccCce--eEEEEC--CCCCCeEEEEEcCCCCCEEEEEeCCCeE
Q 001352 796 DTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFK--TILTIM--PPSPTATSLAFNPHDNNVIAIGMDDSTI 869 (1093)
Q Consensus 796 ~~~~~~~~~~v~~l~~s~dg~~la~~~--dg~i~iwd~~~~~--~~~~~~--~~~~~i~~l~~s~~d~~~lasg~~dg~i 869 (1093)
+.+ ........+.|+-|+..++.++ ...+.+++.++.. .+..+. +....|+.++.|| +|++||+.+.+|.|
T Consensus 423 ~~~--~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~Ss-dG~yiaa~~t~g~I 499 (691)
T KOG2048|consen 423 DVP--LALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSS-DGNYIAAISTRGQI 499 (691)
T ss_pred cch--hhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcC-CCCEEEEEeccceE
Confidence 011 1334567788998888887776 3778888876543 333332 2456899999999 99999999999999
Q ss_pred EEEEcCCcceeeecccccCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeeeeeee---cCCCcccCCCCceEEEE
Q 001352 870 LIYNARSSEVISKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQ---TPDGVMTLAPSETHIQF 945 (1093)
Q Consensus 870 ~iwd~~~~~~~~~l~~h~~~V~~l~~s~-dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~ 945 (1093)
.+|++++++.......-...|++++|+| +.+.|+.+..++++.-+|++........... .+.........+..+.|
T Consensus 500 ~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l~~ws~~nt~nlpk~~~~l~~~~~gisf 579 (691)
T KOG2048|consen 500 FVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNLTRWSKNNTRNLPKEPKTLIPGIPGISF 579 (691)
T ss_pred EEEEcccceeecchhccCcceeeeeccccccCcEEEEecCCeEEEEecchhhhhhhhhccccccccChhhcCCCCceEEe
Confidence 9999998775544434457899999995 6688999999999999999543322111111 11111111246888899
Q ss_pred ccCCCEEEEEe-CCeEEEEEcC
Q 001352 946 HKDQTRFLLVH-ETHLAIYEAE 966 (1093)
Q Consensus 946 s~dg~~l~~~~-d~~i~vwd~~ 966 (1093)
+|.....+... .+-+.+.|..
T Consensus 580 d~~n~s~~~~~~a~w~~~id~~ 601 (691)
T KOG2048|consen 580 DPKNSSRFIVYDAHWSCLIDFS 601 (691)
T ss_pred CCCCccEEEEEcCcEEEEEecC
Confidence 88777666543 3456666543
No 52
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.2e-32 Score=294.15 Aligned_cols=247 Identities=18% Similarity=0.334 Sum_probs=227.5
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCc----------------------------ccceEEeccccccEEE
Q 001352 396 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD----------------------------ARQQLEIDAHVGNVND 447 (1093)
Q Consensus 396 h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~----------------------------~~~~~~~~~h~~~v~~ 447 (1093)
-...++|..||+|++.||.|..|..|++|.+...+. -....++.||.++|..
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg 456 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYG 456 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceee
Confidence 446799999999999999999999999999874210 0113357899999999
Q ss_pred EEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEec
Q 001352 448 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD 527 (1093)
Q Consensus 448 ~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 527 (1093)
+.|+|+.+ +|++++.|+++|+|.+.+..++-.++||..||+.+.|+| .|-++++++.|++-++|..+...+...+.
T Consensus 457 ~sFsPd~r--fLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P--~GyYFatas~D~tArLWs~d~~~PlRifa 532 (707)
T KOG0263|consen 457 CSFSPDRR--FLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP--RGYYFATASHDQTARLWSTDHNKPLRIFA 532 (707)
T ss_pred eeeccccc--ceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC--CceEEEecCCCceeeeeecccCCchhhhc
Confidence 99999999 899999999999999999999999999999999999964 67999999999999999999999999999
Q ss_pred CCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001352 528 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 607 (1093)
Q Consensus 528 ~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd 607 (1093)
+|-..|.|+.|+|+..++++|+. |.++++||+.+|..++.|.||. ++|.+++|+|+|.+|++|++||.|.+||
T Consensus 533 ghlsDV~cv~FHPNs~Y~aTGSs----D~tVRlWDv~~G~~VRiF~GH~---~~V~al~~Sp~Gr~LaSg~ed~~I~iWD 605 (707)
T KOG0263|consen 533 GHLSDVDCVSFHPNSNYVATGSS----DRTVRLWDVSTGNSVRIFTGHK---GPVTALAFSPCGRYLASGDEDGLIKIWD 605 (707)
T ss_pred ccccccceEEECCcccccccCCC----CceEEEEEcCCCcEEEEecCCC---CceEEEEEcCCCceEeecccCCcEEEEE
Confidence 99999999999999999999976 7789999999999999999988 9999999999999999999999999999
Q ss_pred CCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001352 608 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 655 (1093)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 655 (1093)
+.+++++..+..| ...|.++.|+.+|..||+++.|++|++||+...
T Consensus 606 l~~~~~v~~l~~H--t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 606 LANGSLVKQLKGH--TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred cCCCcchhhhhcc--cCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 9999999999877 456999999999999999999999999998744
No 53
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=4.5e-33 Score=270.32 Aligned_cols=276 Identities=21% Similarity=0.310 Sum_probs=235.1
Q ss_pred CCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEE
Q 001352 334 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 413 (1093)
Q Consensus 334 h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~la 413 (1093)
..+.|.|+.+..+ .+++|..|++|+|||.++..++.. +.||++.|.|+.| |.+.|+
T Consensus 196 ~skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~~-------------------L~GHtGSVLCLqy--d~rvii 251 (499)
T KOG0281|consen 196 NSKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLKI-------------------LTGHTGSVLCLQY--DERVIV 251 (499)
T ss_pred cCCceEEEEecch---hhhcccccCceEEeccccHHHHHh-------------------hhcCCCcEEeeec--cceEEE
Confidence 4558999999654 389999999999999999888765 8899999999998 567999
Q ss_pred EEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCce---eEEeecCCCCeE
Q 001352 414 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR---TYSFEGHGAPVY 490 (1093)
Q Consensus 414 s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~---~~~~~~h~~~v~ 490 (1093)
+|+.|.+|+|||+++|+++. ++-+|...|..+.|+.. +++|++.|.+|.|||+.+... .+.+.||...|+
T Consensus 252 sGSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN 324 (499)
T KOG0281|consen 252 SGSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 324 (499)
T ss_pred ecCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence 99999999999999999887 66789999999999863 799999999999999987653 356789999999
Q ss_pred EeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeee
Q 001352 491 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 570 (1093)
Q Consensus 491 ~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 570 (1093)
.+.| +.+++++++.|.+|++|++.+.+.+.++.+|...|.|+.+ .|+++++|+. +.+|++||+..|.+++
T Consensus 325 vVdf----d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSS----DntIRlwdi~~G~cLR 394 (499)
T KOG0281|consen 325 VVDF----DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLR 394 (499)
T ss_pred eecc----ccceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCC----CceEEEEeccccHHHH
Confidence 9988 4469999999999999999999999999999999887775 6788888876 7789999999999999
Q ss_pred eeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE-------ecCCCCCCCceEEEecCCCEEEEEEC
Q 001352 571 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI-------DAGGGLPENPRICFNKNGTLLAVIAN 643 (1093)
Q Consensus 571 ~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~~~~~~~~v~~v~~s~~~~~l~~~~~ 643 (1093)
.++||+ .-|.++.|. .+.+++|+.||+|+|||+.++..-... ..-.+.+.|..+.| |...+++.+.
T Consensus 395 vLeGHE---eLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssH 467 (499)
T KOG0281|consen 395 VLEGHE---ELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSH 467 (499)
T ss_pred HHhchH---Hhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccC
Confidence 999999 889999995 578999999999999999876533211 11123345666666 4678999999
Q ss_pred CCeEEEEEcCCCce
Q 001352 644 ENRIKILETPESNS 657 (1093)
Q Consensus 644 dg~i~iw~~~~~~~ 657 (1093)
|.+|.|||..++..
T Consensus 468 ddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 468 DDTILIWDFLNGPP 481 (499)
T ss_pred CCeEEEEEcCCCCc
Confidence 99999999987643
No 54
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.5e-30 Score=283.32 Aligned_cols=287 Identities=25% Similarity=0.412 Sum_probs=254.6
Q ss_pred HhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC
Q 001352 329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 408 (1093)
Q Consensus 329 ~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d 408 (1093)
+++.+|.+.|++++|+|+++ ++++|+.||.|.+|++.+++.... +..|...+..+.|+|+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~~-------------------~~~~~~~i~~~~~~~~ 62 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLRT-------------------LKGHTGPVRDVAASAD 62 (289)
T ss_pred hHhcccCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCCcEEE-------------------EecCCcceeEEEECCC
Confidence 56789999999999999998 588888999999999998875543 5578899999999999
Q ss_pred CCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCC
Q 001352 409 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 488 (1093)
Q Consensus 409 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~ 488 (1093)
+++|++++.++.|++||+.+++.+. .+..|...|.++.|+++++ ++++++.|+.|++||+.+++....+..|...
T Consensus 63 ~~~l~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 137 (289)
T cd00200 63 GTYLASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDW 137 (289)
T ss_pred CCEEEEEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCc
Confidence 9999999999999999999875444 5678999999999999977 7888888999999999999999999999999
Q ss_pred eEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCee
Q 001352 489 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 568 (1093)
Q Consensus 489 v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~ 568 (1093)
+.++++++. +.++++++.||.|++||++..+....+..+...+.++.|+|+++.+++++. ++.|.+||..+++.
T Consensus 138 i~~~~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~~ 211 (289)
T cd00200 138 VNSVAFSPD--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGKC 211 (289)
T ss_pred EEEEEEcCc--CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC----CCcEEEEECCCCce
Confidence 999999664 568888888999999999988888888888889999999999999998875 56799999999988
Q ss_pred eeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEE
Q 001352 569 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 648 (1093)
Q Consensus 569 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 648 (1093)
+..+..+. ..+.++.|+|++.++++++.+|.|++||+.+++....+..+ ...+.+++|+|+++++++++.||.++
T Consensus 212 ~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~i~ 286 (289)
T cd00200 212 LGTLRGHE---NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH--TNSVTSLAWSPDGKRLASGSADGTIR 286 (289)
T ss_pred ecchhhcC---CceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc--CCcEEEEEECCCCCEEEEecCCCeEE
Confidence 88887766 78999999999888888888999999999998888888744 34689999999999999999999999
Q ss_pred EEE
Q 001352 649 ILE 651 (1093)
Q Consensus 649 iw~ 651 (1093)
+|+
T Consensus 287 iw~ 289 (289)
T cd00200 287 IWD 289 (289)
T ss_pred ecC
Confidence 996
No 55
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.9e-30 Score=243.68 Aligned_cols=292 Identities=16% Similarity=0.226 Sum_probs=235.6
Q ss_pred ccccceEEEEeecC-CceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEE
Q 001352 733 VKANKISRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 811 (1093)
Q Consensus 733 ~~~~~i~~l~~s~~-g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 811 (1093)
+|.+++..++|+|. |..|++++.|..+++|+..... -|. ....+. .+|...|+.++|
T Consensus 12 gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~--------------s~~-------ck~vld-~~hkrsVRsvAw 69 (312)
T KOG0645|consen 12 GHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD--------------SWT-------CKTVLD-DGHKRSVRSVAW 69 (312)
T ss_pred CCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC--------------cEE-------EEEecc-ccchheeeeeee
Confidence 47889999999999 8899999999999999865210 011 111111 259999999999
Q ss_pred ccCCCEEEEEe-CCeEEEEEccC--ceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc---ceeeeccc
Q 001352 812 SKNDAYLFSAS-GGVISLYIVMT--FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS---EVISKLEG 885 (1093)
Q Consensus 812 s~dg~~la~~~-dg~i~iwd~~~--~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~---~~~~~l~~ 885 (1093)
+|.|++||+++ |.++.||.-.. .+++..+.+|..+|.|++|++ +|.+||+++.|++|.||.+..+ ++...+++
T Consensus 70 sp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~ 148 (312)
T KOG0645|consen 70 SPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQE 148 (312)
T ss_pred cCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeecc
Confidence 99999999999 99999998764 478889999999999999999 9999999999999999999854 57789999
Q ss_pred ccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE-EeCCeEEEEE
Q 001352 886 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYE 964 (1093)
Q Consensus 886 h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd 964 (1093)
|...|..+.|+|...+|+|+|.|.+|++|+-..+ ....+.+.+.+|.. .|.+++|++.|..|++ +.|++++||.
T Consensus 149 HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~d--ddW~c~~tl~g~~~---TVW~~~F~~~G~rl~s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 149 HTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDD--DDWECVQTLDGHEN---TVWSLAFDNIGSRLVSCSDDGTVSIWR 223 (312)
T ss_pred ccccccEEEEcCCcceeEEeccCCeEEEEeecCC--CCeeEEEEecCccc---eEEEEEecCCCceEEEecCCcceEeee
Confidence 9999999999999999999999999999988731 12557788888875 7999999999999888 5788999999
Q ss_pred cCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCC
Q 001352 965 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKP 1044 (1093)
Q Consensus 965 ~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~ 1044 (1093)
.-+ .+..-|++.+..+.|. ...|++++.|+.|+++.-...-.-..+... ....+.|...|. ++.|.|...
T Consensus 224 ~~~-----~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~-~~~~~aHe~dVN--sV~w~p~~~ 293 (312)
T KOG0645|consen 224 LYT-----DLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLL-AKKEGAHEVDVN--SVQWNPKVS 293 (312)
T ss_pred ecc-----CcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHH-Hhhhcccccccc--eEEEcCCCC
Confidence 652 2334478899999998 447999999999999987753222222211 122233555566 678999557
Q ss_pred CEEEEEeCCCcEEEEecC
Q 001352 1045 TQFAVGLTNGEVYVIEPN 1062 (1093)
Q Consensus 1045 ~~l~~~~~dg~v~~w~~~ 1062 (1093)
++|++|++||.|.+|.+.
T Consensus 294 ~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 294 NRLASGGDDGIVNFWELE 311 (312)
T ss_pred CceeecCCCceEEEEEec
Confidence 899999999999999874
No 56
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=4.3e-32 Score=270.06 Aligned_cols=283 Identities=16% Similarity=0.212 Sum_probs=245.8
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCC
Q 001352 396 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 475 (1093)
Q Consensus 396 h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~ 475 (1093)
-+.+|..|.|.|+|++|++|+..|.+.+|+..+-. -...+..|..+|+++.|+++|. +++||+.+|.|++|+..-
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn---FEtilQaHDs~Vr~m~ws~~g~--wmiSgD~gG~iKyWqpnm 169 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN---FETILQAHDSPVRTMKWSHNGT--WMISGDKGGMIKYWQPNM 169 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceee---HHHHhhhhcccceeEEEccCCC--EEEEcCCCceEEecccch
Confidence 34689999999999999999999999999975422 1113568999999999999999 899999999999999554
Q ss_pred CceeEEeecC-CCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCC
Q 001352 476 GSRTYSFEGH-GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 554 (1093)
Q Consensus 476 ~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~ 554 (1093)
.. ++.+.+| ...|++++|+| +...+++++.||+|+|||....++...+.+|+-.|.++.|+|....+++++.
T Consensus 170 nn-Vk~~~ahh~eaIRdlafSp--nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgsk---- 242 (464)
T KOG0284|consen 170 NN-VKIIQAHHAEAIRDLAFSP--NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSK---- 242 (464)
T ss_pred hh-hHHhhHhhhhhhheeccCC--CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccC----
Confidence 44 4445454 49999999977 4468999999999999999999998999999999999999999999999986
Q ss_pred ceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEec-
Q 001352 555 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK- 633 (1093)
Q Consensus 555 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~- 633 (1093)
+..|.+||.++|.++.++.+|. ..|..+.|+|++++|+++|.|..++++|+++.+.+.++..|. ..+.++.|+|
T Consensus 243 DnlVKlWDprSg~cl~tlh~HK---ntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hk--kdv~~~~WhP~ 317 (464)
T KOG0284|consen 243 DNLVKLWDPRSGSCLATLHGHK---NTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHK--KDVTSLTWHPL 317 (464)
T ss_pred CceeEeecCCCcchhhhhhhcc---ceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcch--hhheeeccccc
Confidence 5589999999999999999998 999999999999999999999999999999888888887664 4699999999
Q ss_pred CCCEEEEEECCCeEEEEEcCCCceee-ecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccce
Q 001352 634 NGTLLAVIANENRIKILETPESNSVD-AAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 712 (1093)
Q Consensus 634 ~~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~ 712 (1093)
...+|.+|+.||.|..|.+....++. .-.+|...|++++++ |-|..|++|+.|.+++
T Consensus 318 ~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~h----------------------PlGhil~tgsnd~t~r 375 (464)
T KOG0284|consen 318 NESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYH----------------------PLGHILATGSNDRTVR 375 (464)
T ss_pred cccceeeccCCCceEEEeccccccccCCCcccccceeeeecc----------------------ccceeEeecCCCccee
Confidence 67789999999999999999554444 445788899999997 5677888999999999
Q ss_pred eccee
Q 001352 713 VEKPL 717 (1093)
Q Consensus 713 ~w~~~ 717 (1093)
+|...
T Consensus 376 fw~r~ 380 (464)
T KOG0284|consen 376 FWTRN 380 (464)
T ss_pred eeccC
Confidence 99854
No 57
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.98 E-value=2.8e-30 Score=292.68 Aligned_cols=291 Identities=21% Similarity=0.304 Sum_probs=254.1
Q ss_pred CCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEEC-
Q 001352 395 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA- 473 (1093)
Q Consensus 395 ~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~- 473 (1093)
.|...|.++.|++||+++++++.++.+++|+..+++. .....+.+|...|.+++|+||++ ++++++.|++|+|||+
T Consensus 157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~--~l~s~s~D~tiriwd~~ 233 (456)
T KOG0266|consen 157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGS--YLLSGSDDKTLRIWDLK 233 (456)
T ss_pred cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCc--EEEEecCCceEEEeecc
Confidence 3588999999999999999999999999999977662 12225679999999999999999 8999999999999999
Q ss_pred CCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCC
Q 001352 474 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 553 (1093)
Q Consensus 474 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~ 553 (1093)
..+..++++.+|...|++++|++ +++++++|+.|++|++||+++++....+..|...|.+++|+++++++++++.
T Consensus 234 ~~~~~~~~l~gH~~~v~~~~f~p--~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~--- 308 (456)
T KOG0266|consen 234 DDGRNLKTLKGHSTYVTSVAFSP--DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASY--- 308 (456)
T ss_pred CCCeEEEEecCCCCceEEEEecC--CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCC---
Confidence 56689999999999999999966 4489999999999999999999999999999999999999999999999965
Q ss_pred CceeEEEEeCCCCe--eeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCC-CCCceEE
Q 001352 554 GESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL-PENPRIC 630 (1093)
Q Consensus 554 ~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~ 630 (1093)
++.|++||+.++. +...+.++.... ++.++.|+|++.++++++.|+.+++||+..+........+... ..+.+..
T Consensus 309 -d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~ 386 (456)
T KOG0266|consen 309 -DGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPT 386 (456)
T ss_pred -CccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccc
Confidence 7789999999999 567888877333 7999999999999999999999999999999999888877553 1334455
Q ss_pred EecCCCEEEEEECCCeEEEEEcCCCceeeecccc-cccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeec--c
Q 001352 631 FNKNGTLLAVIANENRIKILETPESNSVDAAGVL-SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE--A 707 (1093)
Q Consensus 631 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~--~ 707 (1093)
.++.+.++++|+.|+.|.+|+..++..+..+.+| ...+..+.++ +...++++++ .
T Consensus 387 ~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~----------------------~~~~~~~s~s~~~ 444 (456)
T KOG0266|consen 387 LSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSH----------------------PTENLIASSSFEG 444 (456)
T ss_pred ccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccC----------------------CCcCeeeecCcCC
Confidence 6789999999999999999999999999999998 6767666665 5566677776 6
Q ss_pred cccceeccee
Q 001352 708 ENKSEVEKPL 717 (1093)
Q Consensus 708 d~~i~~w~~~ 717 (1093)
|+.+++|...
T Consensus 445 d~~~~~w~~~ 454 (456)
T KOG0266|consen 445 DGLIRLWKYD 454 (456)
T ss_pred CceEEEecCC
Confidence 8889999753
No 58
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.98 E-value=1e-31 Score=273.80 Aligned_cols=290 Identities=15% Similarity=0.189 Sum_probs=253.4
Q ss_pred eecCCCCCeEEEEECC-CCCEEEEEEcCCEEEEEEccC-CCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEE
Q 001352 392 LVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 469 (1093)
Q Consensus 392 ~~~~h~~~V~~v~~s~-dg~~las~~~d~~i~iwd~~~-~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~ 469 (1093)
.+.||...|+++.|.| .+.+|++++.|+.|+||++.. +++++ ++.+|..+|.+++|+++|. .++|++.|+.|+
T Consensus 209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr---tf~gH~k~Vrd~~~s~~g~--~fLS~sfD~~lK 283 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR---TFKGHRKPVRDASFNNCGT--SFLSASFDRFLK 283 (503)
T ss_pred eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh---hhhcchhhhhhhhccccCC--eeeeeecceeee
Confidence 3789999999999999 899999999999999999987 66666 7889999999999999999 799999999999
Q ss_pred EEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEe
Q 001352 470 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 549 (1093)
Q Consensus 470 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~ 549 (1093)
+||+++|+++..+. ....++++.|+|++ .+.+++|+.|+.|+.||+++++.+..+..|-+.|..+.|-++|+++++.+
T Consensus 284 lwDtETG~~~~~f~-~~~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS 361 (503)
T KOG0282|consen 284 LWDTETGQVLSRFH-LDKVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS 361 (503)
T ss_pred eeccccceEEEEEe-cCCCceeeecCCCC-CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec
Confidence 99999999999986 55678899998875 47999999999999999999999999999999999999999999999988
Q ss_pred cCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce---EEEEecCCCCCCC
Q 001352 550 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL---LTTIDAGGGLPEN 626 (1093)
Q Consensus 550 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~v 626 (1093)
. +..+++|+...+-.++...... .....++..+|+++++++-+.|+.|.++.+...-. ...+.+|.-.+.-
T Consensus 362 D----dks~riWe~~~~v~ik~i~~~~--~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys 435 (503)
T KOG0282|consen 362 D----DKSVRIWENRIPVPIKNIADPE--MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYS 435 (503)
T ss_pred c----CccEEEEEcCCCccchhhcchh--hccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCce
Confidence 6 5679999999887776665544 24577899999999999999999999998654322 2344444333345
Q ss_pred ceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeec
Q 001352 627 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE 706 (1093)
Q Consensus 627 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~ 706 (1093)
..+.|||||++|++|..||.+.+||.++.+.+..++.|...+..+.|.|.. ...+++++
T Consensus 436 ~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e---------------------~Skvat~~ 494 (503)
T KOG0282|consen 436 CQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVE---------------------PSKVATCG 494 (503)
T ss_pred eeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCC---------------------cceeEecc
Confidence 678999999999999999999999999999999999999999999999744 45589999
Q ss_pred ccccceecc
Q 001352 707 AENKSEVEK 715 (1093)
Q Consensus 707 ~d~~i~~w~ 715 (1093)
.+|.|++|+
T Consensus 495 w~G~Ikiwd 503 (503)
T KOG0282|consen 495 WDGLIKIWD 503 (503)
T ss_pred cCceeEecC
Confidence 999999996
No 59
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=3.6e-31 Score=246.01 Aligned_cols=290 Identities=17% Similarity=0.230 Sum_probs=255.0
Q ss_pred hhccCCCCceeeeecC---CCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEEC
Q 001352 330 TLIEGSSSPMSMDFHP---VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 406 (1093)
Q Consensus 330 ~l~~h~~~V~~~~~sp---dg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 406 (1093)
+-.||+.+|..++||| +| |+|++++.||.-.+-+-+||.-+.+ +.||.+.|.+...+
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g-~flisa~kd~~pmlr~g~tgdwigt-------------------feghkgavw~~~l~ 68 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDG-YFLISASKDGKPMLRNGDTGDWIGT-------------------FEGHKGAVWSATLN 68 (334)
T ss_pred EEcCCCcceeEEeccCCCCCc-eEEEEeccCCCchhccCCCCCcEEe-------------------eeccCcceeeeecC
Confidence 4468999999999985 77 6899999999999999999998876 77999999999999
Q ss_pred CCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCc-eeEEeecC
Q 001352 407 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEGH 485 (1093)
Q Consensus 407 ~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~-~~~~~~~h 485 (1093)
.+-.+-|+++.|-+.+|||.-+|..+. ++ .|...|.+++|+.|.+ +|+||+.++.+||+|++..+ +...+.+|
T Consensus 69 ~na~~aasaaadftakvw~a~tgdelh---sf-~hkhivk~~af~~ds~--~lltgg~ekllrvfdln~p~App~E~~gh 142 (334)
T KOG0278|consen 69 KNATRAASAAADFTAKVWDAVTGDELH---SF-EHKHIVKAVAFSQDSN--YLLTGGQEKLLRVFDLNRPKAPPKEISGH 142 (334)
T ss_pred chhhhhhhhcccchhhhhhhhhhhhhh---hh-hhhheeeeEEecccch--hhhccchHHHhhhhhccCCCCCchhhcCC
Confidence 999999999999999999999998766 33 5999999999999999 79999999999999998764 56788999
Q ss_pred CCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001352 486 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 565 (1093)
Q Consensus 486 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~ 565 (1093)
.+.|..+.|.... +.+++.+.|++||+||.+++.....+... .+|+++.++++|++|..+. .+.|..||..+
T Consensus 143 tg~Ir~v~wc~eD--~~iLSSadd~tVRLWD~rTgt~v~sL~~~-s~VtSlEvs~dG~ilTia~-----gssV~Fwdaks 214 (334)
T KOG0278|consen 143 TGGIRTVLWCHED--KCILSSADDKTVRLWDHRTGTEVQSLEFN-SPVTSLEVSQDGRILTIAY-----GSSVKFWDAKS 214 (334)
T ss_pred CCcceeEEEeccC--ceEEeeccCCceEEEEeccCcEEEEEecC-CCCcceeeccCCCEEEEec-----CceeEEecccc
Confidence 9999999986443 67888899999999999999988877654 4889999999999998875 33499999999
Q ss_pred CeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCC
Q 001352 566 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 645 (1093)
Q Consensus 566 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 645 (1093)
-..++.+.... .|.+...+|+...+++|++|..++.||..+|+.+..+. .++..+|.|+.|+|+|...++|+.||
T Consensus 215 f~~lKs~k~P~----nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n-kgh~gpVhcVrFSPdGE~yAsGSEDG 289 (334)
T KOG0278|consen 215 FGLLKSYKMPC----NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN-KGHFGPVHCVRFSPDGELYASGSEDG 289 (334)
T ss_pred ccceeeccCcc----ccccccccCCCceEEecCcceEEEEEeccCCceeeecc-cCCCCceEEEEECCCCceeeccCCCc
Confidence 99988887644 78999999999999999999999999999999988862 23456799999999999999999999
Q ss_pred eEEEEEcCCCcee
Q 001352 646 RIKILETPESNSV 658 (1093)
Q Consensus 646 ~i~iw~~~~~~~~ 658 (1093)
+|++|....++..
T Consensus 290 TirlWQt~~~~~~ 302 (334)
T KOG0278|consen 290 TIRLWQTTPGKTY 302 (334)
T ss_pred eEEEEEecCCCch
Confidence 9999998866443
No 60
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.6e-30 Score=236.70 Aligned_cols=269 Identities=20% Similarity=0.311 Sum_probs=237.5
Q ss_pred eecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEE
Q 001352 392 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 471 (1093)
Q Consensus 392 ~~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw 471 (1093)
++..|+++|.++.|+-||+|.++++.|.+|++|+...|.+++ ++.+|...|..++.+.|+. .+++|+.|+.|.+|
T Consensus 12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQVW 86 (307)
T ss_pred eecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEEEE
Confidence 377899999999999999999999999999999999998777 7889999999999999998 69999999999999
Q ss_pred ECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCC--CceEEecCCCCceEEEEEccCCCEEEEEe
Q 001352 472 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL--GARVDYDAPGLGCTRMAYSANGRRLFSCG 549 (1093)
Q Consensus 472 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~s~d~~~l~~~~ 549 (1093)
|+.+|+.++.+.+|.+.|+.+.|+ .+...+++|+.|..+++||-++. ++++.+......|.++..+ +..+++++
T Consensus 87 DV~TGkv~Rr~rgH~aqVNtV~fN--eesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS 162 (307)
T KOG0316|consen 87 DVNTGKVDRRFRGHLAQVNTVRFN--EESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGS 162 (307)
T ss_pred EcccCeeeeecccccceeeEEEec--CcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeec
Confidence 999999999999999999999995 45579999999999999998865 4556666667778777764 56677777
Q ss_pred cCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceE
Q 001352 550 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 629 (1093)
Q Consensus 550 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 629 (1093)
. ++.++.||++.|+....+-+ .+|+++.|+++++..++++.|+++++.|-.+|+++....+|.....-...
T Consensus 163 ~----DGtvRtydiR~G~l~sDy~g-----~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc 233 (307)
T KOG0316|consen 163 V----DGTVRTYDIRKGTLSSDYFG-----HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDC 233 (307)
T ss_pred c----CCcEEEEEeecceeehhhcC-----CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeee
Confidence 6 77799999999998877776 45999999999999999999999999999999999999888765555667
Q ss_pred EEecCCCEEEEEECCCeEEEEEcCCCceeeeccccccc-ceeeeecCCCc
Q 001352 630 CFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN-LRKLSVNPIST 678 (1093)
Q Consensus 630 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-i~~~~~~~~~~ 678 (1093)
+++.....+++|+.||.+.+||+.....+..+..+... +..+.+.|...
T Consensus 234 ~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~ 283 (307)
T KOG0316|consen 234 CLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMD 283 (307)
T ss_pred eecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCcc
Confidence 88888889999999999999999999999888887777 77788876443
No 61
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=1.5e-31 Score=259.72 Aligned_cols=278 Identities=16% Similarity=0.255 Sum_probs=234.1
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCC
Q 001352 396 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 475 (1093)
Q Consensus 396 h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~ 475 (1093)
....|.|+.+ |...+++|..|++|+|||.++-.+++ .+.||++.|.|+.|.. + ++++|+.|.+|+|||+++
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqyd~--r--viisGSSDsTvrvWDv~t 266 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQYDE--R--VIVSGSSDSTVRVWDVNT 266 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHH---hhhcCCCcEEeeeccc--e--EEEecCCCceEEEEeccC
Confidence 3467999988 57789999999999999999987766 6789999999999954 5 899999999999999999
Q ss_pred CceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCce---EEecCCCCceEEEEEccCCCEEEEEecCC
Q 001352 476 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR---VDYDAPGLGCTRMAYSANGRRLFSCGTSK 552 (1093)
Q Consensus 476 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~---~~~~~~~~~v~~~~~s~d~~~l~~~~~~~ 552 (1093)
|+++.++-+|...|..+.|+ ..++++++.|.++.+||+.....+ ..+.+|...|+.+.|+ .+++++++.
T Consensus 267 ge~l~tlihHceaVLhlrf~----ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASg-- 338 (499)
T KOG0281|consen 267 GEPLNTLIHHCEAVLHLRFS----NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASG-- 338 (499)
T ss_pred CchhhHHhhhcceeEEEEEe----CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecC--
Confidence 99999999999999999984 249999999999999999876643 3667888889998885 458988875
Q ss_pred CCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEe
Q 001352 553 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 632 (1093)
Q Consensus 553 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 632 (1093)
+.+|++|++.+++.++++.+|. ..|.|+.+ .++++++|+.|.+|++||+..|.++..+++|.. -|.++.|.
T Consensus 339 --DRTikvW~~st~efvRtl~gHk---RGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe--LvRciRFd 409 (499)
T KOG0281|consen 339 --DRTIKVWSTSTCEFVRTLNGHK---RGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRFD 409 (499)
T ss_pred --CceEEEEeccceeeehhhhccc---ccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHH--hhhheeec
Confidence 7789999999999999999998 77887776 578999999999999999999999999987754 58999995
Q ss_pred cCCCEEEEEECCCeEEEEEcCCCce---------eeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccce
Q 001352 633 KNGTLLAVIANENRIKILETPESNS---------VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI 703 (1093)
Q Consensus 633 ~~~~~l~~~~~dg~i~iw~~~~~~~---------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~ 703 (1093)
.+.+++|..||+|++||+..... +..+..|.+.|..+.| |...++
T Consensus 410 --~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF------------------------D~fqIv 463 (499)
T KOG0281|consen 410 --NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF------------------------DEFQII 463 (499)
T ss_pred --CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee------------------------cceEEE
Confidence 67899999999999999986532 3334455555555555 466788
Q ss_pred eecccccceecceeeccCcccc
Q 001352 704 SVEAENKSEVEKPLFARPSECQ 725 (1093)
Q Consensus 704 s~~~d~~i~~w~~~~~~~~~~~ 725 (1093)
+++.|.+|.+||+..+.+....
T Consensus 464 sssHddtILiWdFl~~~~~~~~ 485 (499)
T KOG0281|consen 464 SSSHDDTILIWDFLNGPPSAAE 485 (499)
T ss_pred eccCCCeEEEEEcCCCCccccc
Confidence 9999999999998765554433
No 62
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=7e-29 Score=304.34 Aligned_cols=294 Identities=14% Similarity=0.170 Sum_probs=238.0
Q ss_pred hccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC-CC
Q 001352 331 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DG 409 (1093)
Q Consensus 331 l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~-dg 409 (1093)
+..|.+.|++++|+|+|+ ++|+|+.|+.|+|||..+...... ........+. +...|.+++|+| ++
T Consensus 479 ~~~~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~-----------~~~~~~~~~~-~~~~v~~l~~~~~~~ 545 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR-----------DIHYPVVELA-SRSKLSGICWNSYIK 545 (793)
T ss_pred ccCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc-----------ccccceEEec-ccCceeeEEeccCCC
Confidence 456999999999999998 599999999999999864211000 0000000122 356899999987 57
Q ss_pred CEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeC-CCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCC
Q 001352 410 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 488 (1093)
Q Consensus 410 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~ 488 (1093)
.+||+++.||+|++||+.+++.+. .+.+|.+.|++++|+| ++. +|++|+.|++|++||+.++..+..+..+ ..
T Consensus 546 ~~las~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~ 619 (793)
T PLN00181 546 SQVASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-AN 619 (793)
T ss_pred CEEEEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CC
Confidence 899999999999999999876544 6789999999999997 667 8999999999999999999999888754 67
Q ss_pred eEEeeecccCCccEEEEEecCCeEEEEEcCCCC-ceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC-
Q 001352 489 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG- 566 (1093)
Q Consensus 489 v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~- 566 (1093)
|.++.|.+ +++.++++|+.||.|++||++... ....+..|...|.++.|. ++.++++++. ++.|++||+..+
T Consensus 620 v~~v~~~~-~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~----D~~ikiWd~~~~~ 693 (793)
T PLN00181 620 ICCVQFPS-ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST----DNTLKLWDLSMSI 693 (793)
T ss_pred eEEEEEeC-CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC----CCEEEEEeCCCCc
Confidence 88888853 467899999999999999998765 455677888899999997 7888888876 677999998743
Q ss_pred -----eeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEec-----------CCCCCCCceEE
Q 001352 567 -----AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA-----------GGGLPENPRIC 630 (1093)
Q Consensus 567 -----~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~~~v~~v~ 630 (1093)
..+..+.+|. ..+..++|+|++++|++|+.|+.|++|+......+..+.. ..+...|.+++
T Consensus 694 ~~~~~~~l~~~~gh~---~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ 770 (793)
T PLN00181 694 SGINETPLHSFMGHT---NVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVC 770 (793)
T ss_pred cccCCcceEEEcCCC---CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEE
Confidence 5677788877 7889999999999999999999999999876654433221 12234589999
Q ss_pred EecCCCEEEEEECCCeEEEEEc
Q 001352 631 FNKNGTLLAVIANENRIKILET 652 (1093)
Q Consensus 631 ~s~~~~~l~~~~~dg~i~iw~~ 652 (1093)
|+|++..|++++.+|.|++|++
T Consensus 771 ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 771 WRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EcCCCCeEEEecCCCcEEEEec
Confidence 9999999999999999999986
No 63
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=1.8e-29 Score=241.88 Aligned_cols=313 Identities=16% Similarity=0.198 Sum_probs=242.9
Q ss_pred HHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccc-cceeeeeeecCCCCCeEEEEEC
Q 001352 328 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGAC-SMLFKTALVRDPGVSVNRVVWS 406 (1093)
Q Consensus 328 ~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~V~~v~~s 406 (1093)
...|..|+..+.+.+|||||. |+|+|+.|.+|+|.|++..-... ...++..-... .++.. ..+-.|.++|+++.|+
T Consensus 105 t~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks-~~~em~~~~~qa~hPvI-RTlYDH~devn~l~FH 181 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKS-KPKEMISGDTQARHPVI-RTLYDHVDEVNDLDFH 181 (430)
T ss_pred eEEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhc-chhhhccCCcccCCceE-eehhhccCcccceeec
Confidence 345778999999999999998 79999999999999997311100 00000000000 11211 2377899999999999
Q ss_pred CCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEe---e
Q 001352 407 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF---E 483 (1093)
Q Consensus 407 ~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~---~ 483 (1093)
|-...|++|+.|++|++||...-...+....+ ....+|.+++|.|.|. +|+.|....++++||+.+-++...- .
T Consensus 182 Pre~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~QcfvsanPd~ 258 (430)
T KOG0640|consen 182 PRETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSANPDD 258 (430)
T ss_pred chhheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecCccc
Confidence 99999999999999999999865433333233 3566899999999999 8899999999999999999886544 4
Q ss_pred cCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC-C-CCceEEEEEccCCCEEEEEecCCCCceeEEEE
Q 001352 484 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-P-GLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 561 (1093)
Q Consensus 484 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~-~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iw 561 (1093)
+|.+.|+++.++ +.+.+.++++.||.|++||--+.+++.++.. | +..|.+..|+.+|+++++.+. +..+++|
T Consensus 259 qht~ai~~V~Ys--~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~----DS~vkLW 332 (430)
T KOG0640|consen 259 QHTGAITQVRYS--STGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK----DSTVKLW 332 (430)
T ss_pred ccccceeEEEec--CCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC----cceeeee
Confidence 699999999885 4668999999999999999888888776643 3 347889999999999999875 7789999
Q ss_pred eCCCCeeeeeeecccccC--CCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEE
Q 001352 562 NESEGAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL 638 (1093)
Q Consensus 562 d~~~~~~~~~~~~~~~~~--~~v~~v~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l 638 (1093)
.+.+++.+..+.|....+ ..-+...|+....+++.- -..+.+.-||.+++..+..+.. ++...+..+.-||.+.-+
T Consensus 333 Ei~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-gHn~a~R~i~HSP~~p~F 411 (430)
T KOG0640|consen 333 EISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-GHNGAVRWIVHSPVEPAF 411 (430)
T ss_pred eecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-CCCCCceEEEeCCCCCce
Confidence 999999999998753111 122344577677777763 3567899999999888777664 345678999999999999
Q ss_pred EEEECCCeEEEEEcC
Q 001352 639 AVIANENRIKILETP 653 (1093)
Q Consensus 639 ~~~~~dg~i~iw~~~ 653 (1093)
++++.|...++|-..
T Consensus 412 mTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 412 MTCSDDFRARFWYRR 426 (430)
T ss_pred eeecccceeeeeeec
Confidence 999999999999654
No 64
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.97 E-value=1.2e-28 Score=257.64 Aligned_cols=697 Identities=16% Similarity=0.149 Sum_probs=367.0
Q ss_pred HHHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEE
Q 001352 326 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 405 (1093)
Q Consensus 326 ~~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 405 (1093)
+.+-.|.+|.+.|+.+.|||-...|||+|+.|..|+||.+..|-...- ......+.+..-.|.|+.|
T Consensus 70 r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~L-------------Sape~~~g~~~~~vE~l~f 136 (1012)
T KOG1445|consen 70 RDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKL-------------SAPEIDVGGGNVIVECLRF 136 (1012)
T ss_pred cccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCccccc-------------CCcceeecCCceEEEEeec
Confidence 345578899999999999997777999999999999999985432210 0011224455567889999
Q ss_pred CCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCC-CceeEEeec
Q 001352 406 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT-GSRTYSFEG 484 (1093)
Q Consensus 406 s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~-~~~~~~~~~ 484 (1093)
+|...-|...+..|+++|||+.+++.+. ++.+|...|.++.|+.||+ +|++++.|+.|+|||.++ ++.+++..+
T Consensus 137 HpTaDgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~ 211 (1012)
T KOG1445|consen 137 HPTADGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEG 211 (1012)
T ss_pred ccCcCceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCccccccc
Confidence 9977666666678899999999986554 7889999999999999999 899999999999999874 678888888
Q ss_pred CCCCeEEeeecccCCccEEEEEecC----CeEEEEEcCCCCce-EEecC-CCCceEEEEEccCCCEEEEEecCCCCceeE
Q 001352 485 HGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGAR-VDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFL 558 (1093)
Q Consensus 485 h~~~v~~~~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~-~~~~~-~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i 558 (1093)
|.+. ..-...+.++-..|++.+.+ ..|++||.+..... .++.. ....|.---|.||.++|+.++. |+..+
T Consensus 212 H~~~-rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGK---G~~~l 287 (1012)
T KOG1445|consen 212 HGGM-RDSRVLWAGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGK---GTNKL 287 (1012)
T ss_pred cccc-hhheeeeccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecC---CcceE
Confidence 8764 32222224454567666655 45899998765432 23222 2235566678999999888764 57778
Q ss_pred EEEeCCCCeeee--eeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceE-EEe---
Q 001352 559 VEWNESEGAIKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI-CFN--- 632 (1093)
Q Consensus 559 ~iwd~~~~~~~~--~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v-~~s--- 632 (1093)
..+.+...+..- .++..- .......++-|....-+..++ ..+++.+.....+... .+- + -.+. .|+
T Consensus 288 ~~lE~~d~qPyLs~v~~~tl--e~~~~GA~lvpkral~VM~~E--V~rvlQLt~~~ivPi~-y~V--P-RksyrdFH~DL 359 (1012)
T KOG1445|consen 288 FMLEMQDRQPYLSHVFELTL--EEQTLGATLVPKRALHVMDGE--VDRVLQLTKSSIVPIP-YIV--P-RKSYRDFHSDL 359 (1012)
T ss_pred EEEEecCCCcchhhhhhhcc--hhhhccceecchhhhhhcchh--hhhheecccCceeecc-ccc--c-hhhhhhhhhhh
Confidence 888876554321 111100 011122333333211111111 1223333222221110 000 0 0000 111
Q ss_pred -cCCCEEEEEECCCeEEEEEcCCCceeeec------ccc----cccceee------eecCCCceee-eeccCCceEecCC
Q 001352 633 -KNGTLLAVIANENRIKILETPESNSVDAA------GVL----SDNLRKL------SVNPISTVTG-AGIANGSVSVNED 694 (1093)
Q Consensus 633 -~~~~~l~~~~~dg~i~iw~~~~~~~~~~~------~~~----~~~i~~~------~~~~~~~~~~-~~~~~~~~~~~~~ 694 (1093)
|+.+-...++.-|. |-..+++.+..+ +.| ...+... +|.+....-+ .++....-.. ++
T Consensus 360 fPeT~G~~p~~~age---WlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~-~~ 435 (1012)
T KOG1445|consen 360 FPETRGAEPGCTAGE---WLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSS-SN 435 (1012)
T ss_pred CccccCCccCcCccc---eecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCcccccccc-cc
Confidence 11110011111010 111111111110 001 0000000 0000000000 0000000000 00
Q ss_pred CCCCCccceeecccccceecceeeccCccc---ccc-ccCccccccceEEEEeecCCceEEEee----cc--ceeEEe--
Q 001352 695 PKEDVKPEISVEAENKSEVEKPLFARPSEC---QSL-LLPSKVKANKISRLTYNNGGQAIFALA----SN--GVHLMW-- 762 (1093)
Q Consensus 695 ~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~---~~~-~~~~~~~~~~i~~l~~s~~g~~l~~~~----~d--g~v~vw-- 762 (1093)
.-||-..--+......+|-.+....+.... -.. .-...+..+.+..+ ++....+.--. .+ .+..+.
T Consensus 436 ~~Pd~~~qpaV~~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~--~~~~~~~~kP~S~plt~~~s~~s~~~P 513 (1012)
T KOG1445|consen 436 NVPDVQEQPAVPKKEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTI--SPEPVTIVKPASTPLTDSVSTPSVVGP 513 (1012)
T ss_pred CCCccccCCCcCcchhhhhhcccccccccCccCCCcccccccCCCCCcccc--CCCcccccCCCCcccccccccccccCc
Confidence 011100000000001111111000000000 000 00000000000000 00000000000 00 000000
Q ss_pred ----eecCcccCcCcc---cc----cc----------cCCcccCCCCCCcee----eccCCCCCCCCCeeEEEEccCCCE
Q 001352 763 ----RWPRNDLTLSTE---AT----TK----------VPPRLYQPRHGPQFM----VNDTTDSNSQEAVPCFALSKNDAY 817 (1093)
Q Consensus 763 ----~~~~~~~~~~~~---~~----~~----------~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~l~~s~dg~~ 817 (1093)
.++......-+. .+ .. ..+.-|.-..|.... ...+......-+-.+=-|..+.+.
T Consensus 514 ~~~ksvPe~~~~~~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~~r 593 (1012)
T KOG1445|consen 514 AFGKSVPEQPPVNFGKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFCANNKR 593 (1012)
T ss_pred cccccCCCCCCcccCCCccccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCCccCceeeccce
Confidence 000000000000 00 00 000011111111000 000000000111112234456666
Q ss_pred EEEE---eCCeEEEEEccC-ceeEEE-EC--CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc-------ceeeec
Q 001352 818 LFSA---SGGVISLYIVMT-FKTILT-IM--PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-------EVISKL 883 (1093)
Q Consensus 818 la~~---~dg~i~iwd~~~-~~~~~~-~~--~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~-------~~~~~l 883 (1093)
+|+- +.|.|.||++.. |+.... +. -....|+.+.|.|.|...||+++.||.|++|.+..+ .....+
T Consensus 594 vAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~l 673 (1012)
T KOG1445|consen 594 VAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKIL 673 (1012)
T ss_pred EEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceee
Confidence 6654 368999999874 332211 11 134578999999999999999999999999999764 234667
Q ss_pred ccccCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE-EeCCeEE
Q 001352 884 EGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLA 961 (1093)
Q Consensus 884 ~~h~~~V~~l~~s~-dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~ 961 (1093)
.+|...|+++.|+| -.+.|++++.|.+|++||+.+.. ....+.+|.. .|..++|||||+.+|+ +.||+|+
T Consensus 674 t~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~-----~~~~l~gHtd---qIf~~AWSpdGr~~AtVcKDg~~r 745 (1012)
T KOG1445|consen 674 TIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAK-----LYSRLVGHTD---QIFGIAWSPDGRRIATVCKDGTLR 745 (1012)
T ss_pred ecccceEEEEEecchhhhHhhhhhccceeeeeehhhhh-----hhheeccCcC---ceeEEEECCCCcceeeeecCceEE
Confidence 88999999999998 34789999999999999999854 4445667765 8999999999999999 8999999
Q ss_pred EEEcCCcceeeeeecCC-CCCEEEEEEccCCCEEEEEeCC----CcEEEEEcCCCceEEEeccccccCCCCCCCccceeE
Q 001352 962 IYEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVD----GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1036 (1093)
Q Consensus 962 vwd~~~~~~~~~~~~~h-~~~v~~~~fs~dg~~l~t~~~d----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1036 (1093)
||+..+++....-..+. ..+-..+.|--||+++++.+-| +.|.+||..+.....-........+ + ++-
T Consensus 746 Vy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvap----s---~Lv 818 (1012)
T KOG1445|consen 746 VYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAP----S---PLV 818 (1012)
T ss_pred EeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccC----c---ccc
Confidence 99998876543222221 4455677899999999988876 4588998877553211110000000 0 111
Q ss_pred EEeCCCCCCEEEEEeCCCcEEEEecCCCCCCcccCCC
Q 001352 1037 IAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPP 1073 (1093)
Q Consensus 1037 ~~~~p~d~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~ 1073 (1093)
=.|+++.+-+|++|-.|..|..|++..+.+-.-.+.|
T Consensus 819 P~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~ 855 (1012)
T KOG1445|consen 819 PHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAP 855 (1012)
T ss_pred ccccCCCceEEEecCCCceEEEEEecCCCceeeeccc
Confidence 2366666788999999999999999887765544433
No 65
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=2.8e-30 Score=257.77 Aligned_cols=298 Identities=16% Similarity=0.232 Sum_probs=258.4
Q ss_pred CCchHHHHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCe
Q 001352 321 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 400 (1093)
Q Consensus 321 ~~~p~~~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 400 (1093)
+.+|..+...|..|.++|..+.|-++... |++|+.|..|++|++..++.... ..+.|..++|
T Consensus 161 ~~lpS~~~~~ld~h~gev~~v~~l~~sdt-latgg~Dr~Ik~W~v~~~k~~~~-----------------~tLaGs~g~i 222 (459)
T KOG0288|consen 161 DTLPSRALFVLDAHEGEVHDVEFLRNSDT-LATGGSDRIIKLWNVLGEKSELI-----------------STLAGSLGNI 222 (459)
T ss_pred cccchhhhhhhhccccccceeEEccCcch-hhhcchhhhhhhhhcccchhhhh-----------------hhhhccCCCc
Confidence 67889999999999999999999999664 89999999999999988773321 1277888999
Q ss_pred EEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeE
Q 001352 401 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 480 (1093)
Q Consensus 401 ~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~ 480 (1093)
+++.|.++++++++++.|+.+++|++...+... ++.||++.|+++.|..... .+++|+.|.+|++||+..+.|.+
T Consensus 223 t~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~k 297 (459)
T KOG0288|consen 223 TSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCSK 297 (459)
T ss_pred ceeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhheec
Confidence 999999999999999999999999999876544 7889999999999998877 59999999999999999999988
Q ss_pred EeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001352 481 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 560 (1093)
Q Consensus 481 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~i 560 (1093)
++- ....+..|+.. ...+++|-.|+.|++||.++.........++ .|+++..+++|..+++++. +..+.+
T Consensus 298 t~l-~~S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssR----Ddtl~v 367 (459)
T KOG0288|consen 298 TVL-PGSQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSR----DDTLKV 367 (459)
T ss_pred ccc-ccccccceEec----ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecC----CCceee
Confidence 764 33445555542 3578999999999999999999888888776 9999999999999999976 667999
Q ss_pred EeCCCCeeeeeeeccccc-CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEE
Q 001352 561 WNESEGAIKRTYQGLQLQ-HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 639 (1093)
Q Consensus 561 wd~~~~~~~~~~~~~~~~-~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 639 (1093)
.|+++.+....+...... ....+.+.|+|++.|+++||.||.|+||++.++++...+......+.|.+++|+|.|..++
T Consensus 368 iDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Ll 447 (459)
T KOG0288|consen 368 IDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLL 447 (459)
T ss_pred eecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhh
Confidence 999999988887654311 2348889999999999999999999999999999999998776666799999999999999
Q ss_pred EEECCCeEEEEE
Q 001352 640 VIANENRIKILE 651 (1093)
Q Consensus 640 ~~~~dg~i~iw~ 651 (1093)
+++.++.+.+|.
T Consensus 448 sadk~~~v~lW~ 459 (459)
T KOG0288|consen 448 SADKQKAVTLWT 459 (459)
T ss_pred cccCCcceEecC
Confidence 999999999983
No 66
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=2e-28 Score=266.63 Aligned_cols=285 Identities=23% Similarity=0.342 Sum_probs=252.9
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352 393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 472 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 472 (1093)
+.+|.++|.+++|+|++++|++++.++.|++|++.+++... .+..|...+..+.|+++++ .+++++.|+.|++||
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~~ 79 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDVAASADGT--YLASGSSDKTIRLWD 79 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCC--EEEEEcCCCeEEEEE
Confidence 56899999999999999999999999999999999876433 5678999999999999998 799999999999999
Q ss_pred CCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001352 473 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 552 (1093)
Q Consensus 473 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~ 552 (1093)
+.+++.+..+..|...+.++.|.+. +.++++++.+|.+++||+.+.+....+..+...+.+++|+|++.++++++.
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-- 155 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ-- 155 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC--
Confidence 9999999999999999999999654 568888888999999999988888888888889999999999998888764
Q ss_pred CCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEe
Q 001352 553 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 632 (1093)
Q Consensus 553 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 632 (1093)
++.|.+||+.+++.+..+..+. ..+.++.|+|+++.+++++.++.|++||+.+++.+..+..+. ..+.+++|+
T Consensus 156 --~~~i~i~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~ 228 (289)
T cd00200 156 --DGTIKLWDLRTGKCVATLTGHT---GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHE--NGVNSVAFS 228 (289)
T ss_pred --CCcEEEEEccccccceeEecCc---cccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcC--CceEEEEEc
Confidence 5669999999999888888766 789999999999999999999999999999988888775443 368999999
Q ss_pred cCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccce
Q 001352 633 KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 712 (1093)
Q Consensus 633 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~ 712 (1093)
|++.++++++.+|.+++|+..++.....+..+...+.++.++ ++++.+++++.|+.++
T Consensus 229 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~----------------------~~~~~l~~~~~d~~i~ 286 (289)
T cd00200 229 PDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWS----------------------PDGKRLASGSADGTIR 286 (289)
T ss_pred CCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEEC----------------------CCCCEEEEecCCCeEE
Confidence 998888888889999999999888888888888888888886 6778899999999999
Q ss_pred ecc
Q 001352 713 VEK 715 (1093)
Q Consensus 713 ~w~ 715 (1093)
+|+
T Consensus 287 iw~ 289 (289)
T cd00200 287 IWD 289 (289)
T ss_pred ecC
Confidence 996
No 67
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=1.8e-28 Score=230.05 Aligned_cols=281 Identities=16% Similarity=0.225 Sum_probs=244.1
Q ss_pred HHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEEC
Q 001352 327 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 406 (1093)
Q Consensus 327 ~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 406 (1093)
..+.+++|...|.+++|+.||.+ ||+|+.|+++.+|+++.++...... ..+|.+.|..++|+
T Consensus 12 ~~r~~~~~~~~v~Sv~wn~~g~~-lasgs~dktv~v~n~e~~r~~~~~~-----------------~~gh~~svdql~w~ 73 (313)
T KOG1407|consen 12 KRRELQGHVQKVHSVAWNCDGTK-LASGSFDKTVSVWNLERDRFRKELV-----------------YRGHTDSVDQLCWD 73 (313)
T ss_pred hhHHhhhhhhcceEEEEcccCce-eeecccCCceEEEEecchhhhhhhc-----------------ccCCCcchhhheeC
Confidence 34778899999999999999997 9999999999999999885554322 67899999999999
Q ss_pred C-CCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecC
Q 001352 407 P-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 485 (1093)
Q Consensus 407 ~-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h 485 (1093)
| ...++++++.|.+|++||...+++.... .... .=..+.|+|+|+ +++.++.|..|.+.|.++.+.+...+ .
T Consensus 74 ~~~~d~~atas~dk~ir~wd~r~~k~~~~i---~~~~-eni~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~~-~ 146 (313)
T KOG1407|consen 74 PKHPDLFATASGDKTIRIWDIRSGKCTARI---ETKG-ENINITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEEQ-F 146 (313)
T ss_pred CCCCcceEEecCCceEEEEEeccCcEEEEe---eccC-cceEEEEcCCCC--EEEEecCcccEEEEEecccceeehhc-c
Confidence 8 5689999999999999999999876633 2222 334588999999 79999999999999999888776654 4
Q ss_pred CCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001352 486 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 565 (1093)
Q Consensus 486 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~ 565 (1093)
...+..++|+. ++.+++.....|.|.|..+...+.+..+..|...+.|+.|+|+|+++|+|+. +..+.+||+..
T Consensus 147 ~~e~ne~~w~~--~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsA----DAlvSLWD~~E 220 (313)
T KOG1407|consen 147 KFEVNEISWNN--SNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSA----DALVSLWDVDE 220 (313)
T ss_pred cceeeeeeecC--CCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccc----cceeeccChhH
Confidence 55677788863 4457777777899999999999999999999999999999999999999987 77799999999
Q ss_pred CeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECC
Q 001352 566 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 644 (1093)
Q Consensus 566 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 644 (1093)
--+.+.+..+. -+|..+.|+-+|++|++|++|..|-|=++++|..+..++..+. ...|+|+|...+||.+++|
T Consensus 221 LiC~R~isRld---wpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~---t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 221 LICERCISRLD---WPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGP---TFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred hhhheeecccc---CceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCC---ceeEEecCCCceeeEEecC
Confidence 99999999888 8999999999999999999999999999999999999987644 6899999999999998875
No 68
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=6.2e-30 Score=246.09 Aligned_cols=291 Identities=17% Similarity=0.238 Sum_probs=240.4
Q ss_pred ccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEc
Q 001352 733 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS 812 (1093)
Q Consensus 733 ~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 812 (1093)
+..+.+.+..|||||+++++++-||.+.+|++..++...+-+.++. .. ++. +..+|.|+.||
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAq---------d~--fMM-------md~aVlci~FS 272 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQ---------DN--FMM-------MDDAVLCISFS 272 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhh---------cc--eee-------cccceEEEeec
Confidence 3556788999999999999999999999999987765443332221 11 222 67899999999
Q ss_pred cCCCEEEEEe-CCeEEEEEccCceeEEEEC-CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCe
Q 001352 813 KNDAYLFSAS-GGVISLYIVMTFKTILTIM-PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV 890 (1093)
Q Consensus 813 ~dg~~la~~~-dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V 890 (1093)
.|...+|+|+ ||.|++|.+.+|.+++.|. +|...|+|+.||. |+..+.+++.|.++++.-+++|+++..++||++-|
T Consensus 273 RDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyv 351 (508)
T KOG0275|consen 273 RDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYV 351 (508)
T ss_pred ccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccc
Confidence 9999999998 8999999999999999997 8999999999999 88899999999999999999999999999999999
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCC-CEEEE-EeCCeEEEEEcCCc
Q 001352 891 TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ-TRFLL-VHETHLAIYEAEEL 968 (1093)
Q Consensus 891 ~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg-~~l~~-~~d~~i~vwd~~~~ 968 (1093)
+...|++||.++++++.||+|++|+.++.++ +.++.... ..-+|.++-.-|.+ ..+++ -..+++.|.++. |
T Consensus 352 n~a~ft~dG~~iisaSsDgtvkvW~~KtteC-----~~Tfk~~~-~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-G 424 (508)
T KOG0275|consen 352 NEATFTDDGHHIISASSDGTVKVWHGKTTEC-----LSTFKPLG-TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-G 424 (508)
T ss_pred cceEEcCCCCeEEEecCCccEEEecCcchhh-----hhhccCCC-CcccceeEEEcCCCCceEEEEcCCCeEEEEecc-c
Confidence 9999999999999999999999999999663 33322111 11257787777765 33444 467789999985 7
Q ss_pred ceeeeeecCC--CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCCE
Q 001352 969 TCLKQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQ 1046 (1093)
Q Consensus 969 ~~~~~~~~~h--~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~ 1046 (1093)
+.++.+..|. .+...+.+.||.|.++.+.++|+.++-|.+.+|.+...+..+.-.+. -++-+| +.+.
T Consensus 425 QvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvI----------Gl~HHP-HqNl 493 (508)
T KOG0275|consen 425 QVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVI----------GLTHHP-HQNL 493 (508)
T ss_pred eEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccccccc----------ccccCc-ccch
Confidence 7777766654 56677888999999999999999999999999999888774443333 367888 6789
Q ss_pred EEEEeCCCcEEEEe
Q 001352 1047 FAVGLTNGEVYVIE 1060 (1093)
Q Consensus 1047 l~~~~~dg~v~~w~ 1060 (1093)
||+=++||.+++|.
T Consensus 494 lAsYsEDgllKLWk 507 (508)
T KOG0275|consen 494 LASYSEDGLLKLWK 507 (508)
T ss_pred hhhhcccchhhhcC
Confidence 99999999999995
No 69
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=1.4e-27 Score=292.89 Aligned_cols=322 Identities=14% Similarity=0.174 Sum_probs=248.2
Q ss_pred CCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCC----Ccc
Q 001352 357 VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG----SDA 432 (1093)
Q Consensus 357 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~----~~~ 432 (1093)
+|.+++|+..+.+...... ..-+..|.+.|.+++|+|+|++||+|+.|+.|+|||..+. ...
T Consensus 457 ~gl~~~~~~~~~~~~~~~~--------------~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~ 522 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLK--------------QGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI 522 (793)
T ss_pred hhhhhhhcccceEEEEeec--------------cccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc
Confidence 6778888887655432211 1114569999999999999999999999999999998642 111
Q ss_pred c-ceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCe
Q 001352 433 R-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGK 511 (1093)
Q Consensus 433 ~-~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 511 (1093)
. ....+. +...|.+++|++.... +|++++.||+|++||+.+++.+..+.+|...|++++|++. ++.+|++|+.||.
T Consensus 523 ~~~~~~~~-~~~~v~~l~~~~~~~~-~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~ 599 (793)
T PLN00181 523 HYPVVELA-SRSKLSGICWNSYIKS-QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSA-DPTLLASGSDDGS 599 (793)
T ss_pred ccceEEec-ccCceeeEEeccCCCC-EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCC-CCCEEEEEcCCCE
Confidence 1 112233 3467999999886433 7999999999999999999999999999999999999753 4579999999999
Q ss_pred EEEEEcCCCCceEEecCCCCceEEEEEc-cCCCEEEEEecCCCCceeEEEEeCCCCe-eeeeeecccccCCCeEEEEEcC
Q 001352 512 IKAWLYDSLGARVDYDAPGLGCTRMAYS-ANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVVHFDT 589 (1093)
Q Consensus 512 i~vwd~~~~~~~~~~~~~~~~v~~~~~s-~d~~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~v~~~~ 589 (1093)
|++||+.+......+..+ ..+.++.|+ ++|.++++++. ++.|++||++++. .+..+.+|. ..|.++.|.
T Consensus 600 v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~----dg~I~iwD~~~~~~~~~~~~~h~---~~V~~v~f~- 670 (793)
T PLN00181 600 VKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSA----DHKVYYYDLRNPKLPLCTMIGHS---KTVSYVRFV- 670 (793)
T ss_pred EEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeC----CCeEEEEECCCCCccceEecCCC---CCEEEEEEe-
Confidence 999999988777766644 578899995 57999999876 6779999998765 456677776 889999997
Q ss_pred CCCEEEEEeCCCcEEEEECCCC------ceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeeccc
Q 001352 590 AKDQILAAGDDHVIKIWDMNKV------QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV 663 (1093)
Q Consensus 590 ~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 663 (1093)
++.++++++.|++|++||+..+ ..+..+..+ ...+..++|+|++.+|++|+.|+.+++|+......+.....
T Consensus 671 ~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh--~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~ 748 (793)
T PLN00181 671 DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGH--TNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKF 748 (793)
T ss_pred CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCC--CCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEec
Confidence 6789999999999999999743 456666655 34578999999999999999999999999765432221110
Q ss_pred c-cccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEE
Q 001352 664 L-SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLT 742 (1093)
Q Consensus 664 ~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 742 (1093)
. ...+ ... ....+...|.+++
T Consensus 749 ~~~~~~--------------------------------------------------------~~~--~~~~~~~~V~~v~ 770 (793)
T PLN00181 749 KTIDPV--------------------------------------------------------SGL--EVDDASQFISSVC 770 (793)
T ss_pred ccCCcc--------------------------------------------------------ccc--ccCCCCcEEEEEE
Confidence 0 0000 000 0012456799999
Q ss_pred eecCCceEEEeeccceeEEeee
Q 001352 743 YNNGGQAIFALASNGVHLMWRW 764 (1093)
Q Consensus 743 ~s~~g~~l~~~~~dg~v~vw~~ 764 (1093)
|++++..+++++.+|.|++|++
T Consensus 771 ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 771 WRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EcCCCCeEEEecCCCcEEEEec
Confidence 9999999999999999999985
No 70
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=2.3e-28 Score=274.83 Aligned_cols=306 Identities=19% Similarity=0.249 Sum_probs=248.0
Q ss_pred CCCCceeeeecCCCceEEEEEc--cCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCE
Q 001352 334 GSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 411 (1093)
Q Consensus 334 h~~~V~~~~~spdg~~llasg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~ 411 (1093)
+...|..++.+|||.. +|+|+ .||.++||+.+.--... +.++.+ .+-....+..|.+.|+|+.|||||++
T Consensus 12 ~~~~IfSIdv~pdg~~-~aTgGq~~d~~~~iW~~~~vl~~~----~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~~ 83 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVK-FATGGQVLDGGIVIWSQDPVLDEK----EEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGSY 83 (942)
T ss_pred CCeeEEEEEecCCcee-EecCCccccccceeeccccccchh----hhhhcc---cchhheeeccccCceeEEEECCCCCe
Confidence 3556899999999995 89999 89999999975421100 011111 01111126679999999999999999
Q ss_pred EEEEEcCCEEEEEEccC---C------------CcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCC
Q 001352 412 LGVAYSKHIVQLYAYHG---G------------SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 476 (1093)
Q Consensus 412 las~~~d~~i~iwd~~~---~------------~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~ 476 (1093)
||+|++|+.|.||+... + +..+....+.+|...|..++|+|++. ++++++.|++|.|||..+.
T Consensus 84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccc
Confidence 99999999999999883 1 01234556889999999999999999 8999999999999999999
Q ss_pred ceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC------CceEEEEEccCCCEEEEEec
Q 001352 477 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG------LGCTRMAYSANGRRLFSCGT 550 (1093)
Q Consensus 477 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~------~~v~~~~~s~d~~~l~~~~~ 550 (1093)
+.+..+.+|.+.|..+.|. +-|+++++-+.|++|++|+..+......+..+- ..+..+.|||||++|++...
T Consensus 162 ~~~~vl~~H~s~VKGvs~D--P~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 162 ELLKVLRGHQSLVKGVSWD--PIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred eeeeeeecccccccceEEC--CccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence 9999999999999999995 467899999999999999977755555554432 24788999999999999877
Q ss_pred CCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCC-----CC------------EEEEEeCCCcEEEEECCCCce
Q 001352 551 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-----KD------------QILAAGDDHVIKIWDMNKVQL 613 (1093)
Q Consensus 551 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~-----~~------------~l~~~~~dg~i~iwd~~~~~~ 613 (1093)
-+.+...+.|.+-.+.+.-..+.||. .++.++.|+|. .+ .+++|+.|++|.||.....++
T Consensus 240 ~n~~~~~~~IieR~tWk~~~~LvGH~---~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RP 316 (942)
T KOG0973|consen 240 VNGGKSTIAIIERGTWKVDKDLVGHS---APVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRP 316 (942)
T ss_pred ccCCcceeEEEecCCceeeeeeecCC---CceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCc
Confidence 66677889999998888889999999 89999999972 11 456699999999999988777
Q ss_pred EEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001352 614 LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 655 (1093)
Q Consensus 614 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 655 (1093)
+..+..-.. ..|..++|+|||..|++++.||+|.++.....
T Consensus 317 l~vi~~lf~-~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 317 LFVIHNLFN-KSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred hhhhhhhhc-CceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 765543222 45899999999999999999999999998754
No 71
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.2e-28 Score=250.17 Aligned_cols=285 Identities=19% Similarity=0.238 Sum_probs=241.3
Q ss_pred ccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCE
Q 001352 332 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 411 (1093)
Q Consensus 332 ~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~ 411 (1093)
..|. .|++++|||...+=+|+.+. -.+.||+..+...+.. +......|.++.|-.||++
T Consensus 24 ke~~-~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~-------------------~srFk~~v~s~~fR~DG~L 82 (487)
T KOG0310|consen 24 KEHN-SVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKT-------------------FSRFKDVVYSVDFRSDGRL 82 (487)
T ss_pred cccC-cceeEecCCCCCCceEEecc-cEEEEEecchhhhhhh-------------------HHhhccceeEEEeecCCeE
Confidence 3454 99999999966554444332 6799999888776653 3335678999999999999
Q ss_pred EEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEE
Q 001352 412 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 491 (1093)
Q Consensus 412 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~ 491 (1093)
||+|...|.|+|||+.+...++ .+.+|+.+|..+.|+|++.. .+++|+.|+.+++||+.+......+.+|+..|.+
T Consensus 83 laaGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~ 158 (487)
T KOG0310|consen 83 LAAGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRC 158 (487)
T ss_pred EEccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeEe
Confidence 9999999999999977644445 57899999999999999887 8999999999999999999987799999999999
Q ss_pred eeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe-eee
Q 001352 492 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA-IKR 570 (1093)
Q Consensus 492 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~-~~~ 570 (1093)
.+++|. ++.++++|+.||.|++||.+.......--.|+.+|..+.+-|.|..+++++. +.|++||+.+|. .+.
T Consensus 159 g~~~~~-~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-----n~vkVWDl~~G~qll~ 232 (487)
T KOG0310|consen 159 GDISPA-NDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-----NSVKVWDLTTGGQLLT 232 (487)
T ss_pred eccccC-CCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-----CeEEEEEecCCceehh
Confidence 999876 4479999999999999999998655555668889999999999999999873 459999999654 444
Q ss_pred eeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEE
Q 001352 571 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 650 (1093)
Q Consensus 571 ~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 650 (1093)
.+..|. ..|+|+++..++..|++|+-|+.|++||+.+.+.+..+...+ +|.+++.+|++..+++|..+|.+.+-
T Consensus 233 ~~~~H~---KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~---pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 233 SMFNHN---KTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPG---PVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred hhhccc---ceEEEEEeecCCceEeecccccceEEEEccceEEEEeeeccc---ceeeEEecCCCceEEEecccceeeee
Confidence 444466 899999999999999999999999999999999998887664 48999999999999999999998876
Q ss_pred EcC
Q 001352 651 ETP 653 (1093)
Q Consensus 651 ~~~ 653 (1093)
+..
T Consensus 307 r~~ 309 (487)
T KOG0310|consen 307 RRE 309 (487)
T ss_pred hhh
Confidence 443
No 72
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=1.2e-27 Score=225.26 Aligned_cols=287 Identities=13% Similarity=0.152 Sum_probs=240.6
Q ss_pred eeecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEE
Q 001352 391 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 470 (1093)
Q Consensus 391 ~~~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~v 470 (1093)
..+.||+.+++.+.|+.+|.+|.+|+.|.++.||-...|+.+. ++.||++.|+|++..-+.+ .++||+.|.++++
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kL 78 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKL 78 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEE
Confidence 3488999999999999999999999999999999998887665 8899999999999999999 8999999999999
Q ss_pred EECCCCceeEEeecCCCCeEEeeecccCCccEEEEEec-----CCeEEEEEcC-------CCCceEEecCCCCceEEEEE
Q 001352 471 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-----DGKIKAWLYD-------SLGARVDYDAPGLGCTRMAY 538 (1093)
Q Consensus 471 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-----dg~i~vwd~~-------~~~~~~~~~~~~~~v~~~~~ 538 (1093)
||+++|+++.+++ ...+|..+.|++ +|++++.... .+.|.++|++ ..++...+..+...++.+-|
T Consensus 79 WDv~tGk~la~~k-~~~~Vk~~~F~~--~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~W 155 (327)
T KOG0643|consen 79 WDVETGKQLATWK-TNSPVKRVDFSF--GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALW 155 (327)
T ss_pred EEcCCCcEEEEee-cCCeeEEEeecc--CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeee
Confidence 9999999999997 677899999965 4455555543 3669999988 44557778888899999999
Q ss_pred ccCCCEEEEEecCCCCceeEEEEeCCCCee-eeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE
Q 001352 539 SANGRRLFSCGTSKEGESFLVEWNESEGAI-KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 617 (1093)
Q Consensus 539 s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~-~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 617 (1093)
+|-++.|++|.. ++.|.+||.++|.. +..-+.|. ..|+.+.++++..++++++.|.+-++||..+-+.++++
T Consensus 156 g~l~~~ii~Ghe----~G~is~~da~~g~~~v~s~~~h~---~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty 228 (327)
T KOG0643|consen 156 GPLGETIIAGHE----DGSISIYDARTGKELVDSDEEHS---SKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTY 228 (327)
T ss_pred cccCCEEEEecC----CCcEEEEEcccCceeeechhhhc---cccccccccCCcceEEecccCccceeeeccceeeEEEe
Confidence 999999999986 66699999999854 44445555 79999999999999999999999999999999999998
Q ss_pred ecCCCCCCCceEEEecCCCEEEEEECCCeEEEEE--------------cCCCceeeecccccccceeeeecCCCceeeee
Q 001352 618 DAGGGLPENPRICFNKNGTLLAVIANENRIKILE--------------TPESNSVDAAGVLSDNLRKLSVNPISTVTGAG 683 (1093)
Q Consensus 618 ~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~--------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 683 (1093)
... .++++.+++|....++.|+.....-+=. +-..+.+...++|-++|++++|+
T Consensus 229 ~te---~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfh--------- 296 (327)
T KOG0643|consen 229 TTE---RPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFH--------- 296 (327)
T ss_pred eec---ccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEEC---------
Confidence 765 3589999999888887776543332222 22224567788999999999997
Q ss_pred ccCCceEecCCCCCCCccceeecccccceeccee
Q 001352 684 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 717 (1093)
Q Consensus 684 ~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~ 717 (1093)
|+|+..++|+.||.||+..++
T Consensus 297 -------------PdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 297 -------------PDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred -------------CCCcccccCCCCceEEEEEec
Confidence 788889999999999986543
No 73
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=3.5e-29 Score=232.87 Aligned_cols=287 Identities=14% Similarity=0.182 Sum_probs=254.0
Q ss_pred ecCCCCCeEEEEECC---CCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEE
Q 001352 393 VRDPGVSVNRVVWSP---DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 469 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~---dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~ 469 (1093)
..||..+|..++||| +|-+|++++.|+.-.+-+-++|.-+. ++.||.+.|++.....+.. ..++++.|=+.+
T Consensus 10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwig---tfeghkgavw~~~l~~na~--~aasaaadftak 84 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIG---TFEGHKGAVWSATLNKNAT--RAASAAADFTAK 84 (334)
T ss_pred EcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEE---eeeccCcceeeeecCchhh--hhhhhcccchhh
Confidence 678999999999986 89999999999988888888887665 7899999999999998877 789999999999
Q ss_pred EEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEccCCCEEEEE
Q 001352 470 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSC 548 (1093)
Q Consensus 470 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~d~~~l~~~ 548 (1093)
|||.-+|..+++|. |...|.+++| +.|.++|++|+.+..+|+||++..+. ...+.+|.+.|..+.|....+.+++.
T Consensus 85 vw~a~tgdelhsf~-hkhivk~~af--~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSS 161 (334)
T KOG0278|consen 85 VWDAVTGDELHSFE-HKHIVKAVAF--SQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSS 161 (334)
T ss_pred hhhhhhhhhhhhhh-hhheeeeEEe--cccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEee
Confidence 99999999999996 9999999999 55678999999999999999987654 55788999999999999999999987
Q ss_pred ecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCce
Q 001352 549 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 628 (1093)
Q Consensus 549 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 628 (1093)
+. ++.|++||.+++..++.+... .+|.++.++++|.++. ....+.|.+||..+..+++....... |.+
T Consensus 162 ad----d~tVRLWD~rTgt~v~sL~~~----s~VtSlEvs~dG~ilT-ia~gssV~Fwdaksf~~lKs~k~P~n---V~S 229 (334)
T KOG0278|consen 162 AD----DKTVRLWDHRTGTEVQSLEFN----SPVTSLEVSQDGRILT-IAYGSSVKFWDAKSFGLLKSYKMPCN---VES 229 (334)
T ss_pred cc----CCceEEEEeccCcEEEEEecC----CCCcceeeccCCCEEE-EecCceeEEeccccccceeeccCccc---ccc
Confidence 54 667999999999999998764 4899999999987554 45567899999999999988876643 889
Q ss_pred EEEecCCCEEEEEECCCeEEEEEcCCCceeeec-ccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecc
Q 001352 629 ICFNKNGTLLAVIANENRIKILETPESNSVDAA-GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA 707 (1093)
Q Consensus 629 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~ 707 (1093)
.+++|+...+++|+.|..++.||..++..+... ++|..+|.|+.|+ |||..-++|+.
T Consensus 230 ASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFS----------------------PdGE~yAsGSE 287 (334)
T KOG0278|consen 230 ASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFS----------------------PDGELYASGSE 287 (334)
T ss_pred ccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEEC----------------------CCCceeeccCC
Confidence 999999999999999999999999999999885 9999999999997 78888899999
Q ss_pred cccceecceeeccC
Q 001352 708 ENKSEVEKPLFARP 721 (1093)
Q Consensus 708 d~~i~~w~~~~~~~ 721 (1093)
||+|++|.....+.
T Consensus 288 DGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 288 DGTIRLWQTTPGKT 301 (334)
T ss_pred CceEEEEEecCCCc
Confidence 99999999765443
No 74
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=1.6e-27 Score=224.39 Aligned_cols=287 Identities=11% Similarity=0.100 Sum_probs=238.6
Q ss_pred hhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCC
Q 001352 330 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 409 (1093)
Q Consensus 330 ~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg 409 (1093)
.|.||..+++.+.|+.+|. ||.+++.|.++.||-..+|+.+.+ +.||.+.|.|+..+-+.
T Consensus 5 ~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGt-------------------y~GHtGavW~~Did~~s 64 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGT-------------------YDGHTGAVWCCDIDWDS 64 (327)
T ss_pred ccccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeee-------------------ecCCCceEEEEEecCCc
Confidence 4789999999999999999 799999999999999999999987 88999999999999999
Q ss_pred CEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEc-----CCCcEEEEECC-------CCc
Q 001352 410 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-----DDKTIKVWDAV-------TGS 477 (1093)
Q Consensus 410 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~-----~d~~i~vwd~~-------~~~ 477 (1093)
+++++|+.|.++++||+++|+++.. + ....+|..+.|+++|.. ++... ..+.|.++|++ ..+
T Consensus 65 ~~liTGSAD~t~kLWDv~tGk~la~---~-k~~~~Vk~~~F~~~gn~--~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~e 138 (327)
T KOG0643|consen 65 KHLITGSADQTAKLWDVETGKQLAT---W-KTNSPVKRVDFSFGGNL--ILASTDKQMGYTCFVSVFDIRDDSSDIDSEE 138 (327)
T ss_pred ceeeeccccceeEEEEcCCCcEEEE---e-ecCCeeEEEeeccCCcE--EEEEehhhcCcceEEEEEEccCChhhhcccC
Confidence 9999999999999999999987653 3 35678999999999983 33332 34679999987 456
Q ss_pred eeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceE-EecCCCCceEEEEEccCCCEEEEEecCCCCce
Q 001352 478 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 556 (1093)
Q Consensus 478 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~ 556 (1093)
+...+..+...++.+.|.+. +++|++|..||.|..||++++.... ....|...|+.+.+++|..++++++. +.
T Consensus 139 p~~kI~t~~skit~a~Wg~l--~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~----Dt 212 (327)
T KOG0643|consen 139 PYLKIPTPDSKITSALWGPL--GETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK----DT 212 (327)
T ss_pred ceEEecCCccceeeeeeccc--CCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc----Cc
Confidence 68888889999999999664 4799999999999999999976555 45778889999999999999999987 66
Q ss_pred eEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEE--EECCCC------------ceEEEEecCCC
Q 001352 557 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI--WDMNKV------------QLLTTIDAGGG 622 (1093)
Q Consensus 557 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~i--wd~~~~------------~~~~~~~~~~~ 622 (1093)
+-.+||..+-+.++++... .+|++.+++|....++.|+.....-| =+.+.| +.+..+. ++
T Consensus 213 takl~D~~tl~v~Kty~te----~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvk--GH 286 (327)
T KOG0643|consen 213 TAKLVDVRTLEVLKTYTTE----RPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVK--GH 286 (327)
T ss_pred cceeeeccceeeEEEeeec----ccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccc--cc
Confidence 6899999999999999874 49999999999888888664322222 111222 2333444 44
Q ss_pred CCCCceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001352 623 LPENPRICFNKNGTLLAVIANENRIKILETPE 654 (1093)
Q Consensus 623 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 654 (1093)
..+|++++|+|+|+..++|+.||.|++.....
T Consensus 287 FGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 287 FGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred ccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 66799999999999999999999999986653
No 75
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.5e-26 Score=224.98 Aligned_cols=285 Identities=16% Similarity=0.236 Sum_probs=236.5
Q ss_pred cCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEE
Q 001352 333 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 412 (1093)
Q Consensus 333 ~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~l 412 (1093)
.-.+.|.++.|+++|.+ +++++.|.+++|||..+|++++. +..++-.|..+.|......+
T Consensus 12 ~~~~~i~sl~fs~~G~~-litss~dDsl~LYd~~~g~~~~t-------------------i~skkyG~~~~~Fth~~~~~ 71 (311)
T KOG1446|consen 12 ETNGKINSLDFSDDGLL-LITSSEDDSLRLYDSLSGKQVKT-------------------INSKKYGVDLACFTHHSNTV 71 (311)
T ss_pred cCCCceeEEEecCCCCE-EEEecCCCeEEEEEcCCCceeeE-------------------eecccccccEEEEecCCceE
Confidence 34568999999999995 67788899999999999999876 44566788899998887777
Q ss_pred EEEEc--CCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeE
Q 001352 413 GVAYS--KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 490 (1093)
Q Consensus 413 as~~~--d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~ 490 (1093)
+.++. |.+|+.-++.+.+.++ -+.||...|++++.+|-+. .+++++.|++|++||++..++...+.....++.
T Consensus 72 i~sStk~d~tIryLsl~dNkylR---YF~GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~ 146 (311)
T KOG1446|consen 72 IHSSTKEDDTIRYLSLHDNKYLR---YFPGHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIA 146 (311)
T ss_pred EEccCCCCCceEEEEeecCceEE---EcCCCCceEEEEEecCCCC--eEEecccCCeEEeeEecCCCCceEEecCCCcce
Confidence 77766 7899999999998777 7889999999999999998 899999999999999999988877765555554
Q ss_pred EeeecccCCccEEEEEecCCeEEEEEcCCCC--ceEEecC---CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001352 491 SLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDA---PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 565 (1093)
Q Consensus 491 ~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~---~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~ 565 (1093)
+| ++.|-++|++...+.|++||++... +-..+.. ...+.+.+.|||||++++.+.. .+.+++.|.-+
T Consensus 147 --Af--Dp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~----~s~~~~lDAf~ 218 (311)
T KOG1446|consen 147 --AF--DPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN----ASFIYLLDAFD 218 (311)
T ss_pred --eE--CCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC----CCcEEEEEccC
Confidence 45 5677788888888899999998752 3333333 3557899999999999999875 66799999999
Q ss_pred CeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCC
Q 001352 566 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 645 (1093)
Q Consensus 566 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 645 (1093)
|..+..+.++......-...+|+||++++++|+.||+|.+|++++|..+..+... ....+.++.|+|.-..+++++ .
T Consensus 219 G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~~mf~sa~--s 295 (311)
T KOG1446|consen 219 GTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRYAMFVSAS--S 295 (311)
T ss_pred CcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCceeeeeecC--c
Confidence 9999999988754444567889999999999999999999999999999999875 345688999999776666654 5
Q ss_pred eEEEEEcC
Q 001352 646 RIKILETP 653 (1093)
Q Consensus 646 ~i~iw~~~ 653 (1093)
.+.+|-..
T Consensus 296 ~l~fw~p~ 303 (311)
T KOG1446|consen 296 NLVFWLPD 303 (311)
T ss_pred eEEEEecc
Confidence 77788654
No 76
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=1e-27 Score=237.04 Aligned_cols=281 Identities=20% Similarity=0.363 Sum_probs=233.3
Q ss_pred CCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC---CC
Q 001352 334 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD---GS 410 (1093)
Q Consensus 334 h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d---g~ 410 (1093)
|.+.|.++... ++ .+.+|+.||.++|||.. |+.... +.||.++|.+++|--. ..
T Consensus 104 hdDWVSsv~~~--~~-~IltgsYDg~~riWd~~-Gk~~~~-------------------~~Ght~~ik~v~~v~~n~~~~ 160 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SK-WILTGSYDGTSRIWDLK-GKSIKT-------------------IVGHTGPIKSVAWVIKNSSSC 160 (423)
T ss_pred chhhhhhhccc--Cc-eEEEeecCCeeEEEecC-CceEEE-------------------EecCCcceeeeEEEecCCccc
Confidence 88899999998 44 48999999999999965 555443 7899999998888543 33
Q ss_pred EEEEEEcCCEEEEEEccCCCccc-ceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECC---------------
Q 001352 411 LLGVAYSKHIVQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV--------------- 474 (1093)
Q Consensus 411 ~las~~~d~~i~iwd~~~~~~~~-~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~--------------- 474 (1093)
.+++++.|.++++|.++.++... ......||...|.+++..++|. .+++|+.|.+|+||+.+
T Consensus 161 ~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rr 238 (423)
T KOG0313|consen 161 LFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEEDELESSSNRRR 238 (423)
T ss_pred eEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCccccccccchhhh
Confidence 69999999999999999876532 2223459999999999999999 89999999999999932
Q ss_pred ----------CCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCE
Q 001352 475 ----------TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 544 (1093)
Q Consensus 475 ----------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~ 544 (1093)
++.++-++.||..+|.++.|.+ ...+++++.|.+|+.||+.+++....+... ....++.++|..++
T Consensus 239 k~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d---~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~L 314 (423)
T KOG0313|consen 239 KKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD---ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKL 314 (423)
T ss_pred hhhhhhhcccccCceEEecccccceeeEEEcC---CCceEeecccceEEEEEeecccceeeeecC-cceeEeecccccce
Confidence 2234567889999999999965 358999999999999999998887776654 47899999999999
Q ss_pred EEEEecCCCCceeEEEEeCCCCe---eeeeeecccccCCCeEEEEEcCCCCE-EEEEeCCCcEEEEECCCCc-eEEEEec
Q 001352 545 LFSCGTSKEGESFLVEWNESEGA---IKRTYQGLQLQHNSVSVVHFDTAKDQ-ILAAGDDHVIKIWDMNKVQ-LLTTIDA 619 (1093)
Q Consensus 545 l~~~~~~~~~~~~i~iwd~~~~~---~~~~~~~~~~~~~~v~~v~~~~~~~~-l~~~~~dg~i~iwd~~~~~-~~~~~~~ 619 (1093)
|++++. +..+++||++++. ....+.+|. +.|.++.|+|...+ |++|+.|+++++||+++.+ ++..+..
T Consensus 315 l~~gss----dr~irl~DPR~~~gs~v~~s~~gH~---nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~ 387 (423)
T KOG0313|consen 315 LASGSS----DRHIRLWDPRTGDGSVVSQSLIGHK---NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAG 387 (423)
T ss_pred eeecCC----CCceeecCCCCCCCceeEEeeecch---hhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeecc
Confidence 999987 6679999998764 356677777 89999999998765 5669999999999999877 8888877
Q ss_pred CCCCCCCceEEEecCCCEEEEEECCCeEEEEEcC
Q 001352 620 GGGLPENPRICFNKNGTLLAVIANENRIKILETP 653 (1093)
Q Consensus 620 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 653 (1093)
|. ..|.++.|+. +..+++|+.|.+|+|+...
T Consensus 388 h~--DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 388 HN--DKVLSVDWNE-GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred CC--ceEEEEeccC-CceEEeccCcceEEEeccc
Confidence 64 4588899875 6689999999999998654
No 77
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=6.1e-28 Score=231.44 Aligned_cols=307 Identities=13% Similarity=0.191 Sum_probs=238.8
Q ss_pred CCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccc
Q 001352 623 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE 702 (1093)
Q Consensus 623 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l 702 (1093)
...+.+.+|++||.++++|+.|..|+|+|++..-... .+.+ +
T Consensus 112 K~~cR~aafs~DG~lvATGsaD~SIKildvermlaks---~~~e-----------------------------------m 153 (430)
T KOG0640|consen 112 KSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKS---KPKE-----------------------------------M 153 (430)
T ss_pred ccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhc---chhh-----------------------------------h
Confidence 4568999999999999999999999999987321100 0000 0
Q ss_pred eeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCc
Q 001352 703 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR 782 (1093)
Q Consensus 703 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~ 782 (1093)
..+. +....++....-.|...|+.+.|+|....|++++.|+++++||+.......- .+
T Consensus 154 ~~~~--------------~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA--------~K 211 (430)
T KOG0640|consen 154 ISGD--------------TQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRA--------FK 211 (430)
T ss_pred ccCC--------------cccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHH--------HH
Confidence 0000 0011111111123889999999999999999999999999999876432100 01
Q ss_pred ccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeC-CeEEEEEccCceeEEEEC---CCCCCeEEEEEcCCCCC
Q 001352 783 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIM---PPSPTATSLAFNPHDNN 858 (1093)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d-g~i~iwd~~~~~~~~~~~---~~~~~i~~l~~s~~d~~ 858 (1093)
+ + ....+|.++.|+|.|.+|++|.+ .++++||+++.++..... .|.+.|+++.+++ .++
T Consensus 212 ~-------------~---qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~ 274 (430)
T KOG0640|consen 212 V-------------F---QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGS 274 (430)
T ss_pred H-------------h---hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-Ccc
Confidence 1 0 15678999999999999999997 889999999988766543 5788999999999 899
Q ss_pred EEEEEeCCCeEEEEEcCCcceeeecc-cccC-CeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccC
Q 001352 859 VIAIGMDDSTILIYNARSSEVISKLE-GHSK-RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL 936 (1093)
Q Consensus 859 ~lasg~~dg~i~iwd~~~~~~~~~l~-~h~~-~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 936 (1093)
+.++|+.||.|++||--+++++.++. +|.+ .|.+..|+.+|+++++.|.|..+++|.+.+++......=....+..
T Consensus 275 lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq-- 352 (430)
T KOG0640|consen 275 LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQ-- 352 (430)
T ss_pred EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccch--
Confidence 99999999999999999999998886 4654 6889999999999999999999999999997643322111112222
Q ss_pred CCCceEEEEccCCCEEEEE--eCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 001352 937 APSETHIQFHKDQTRFLLV--HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1009 (1093)
Q Consensus 937 ~~~v~~~~~s~dg~~l~~~--~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~ 1009 (1093)
.--+...|+....+++.- ..+.+.-||..++..+..+..+|++.+..+.-||.+.-++||+.|-++++|--.
T Consensus 353 -~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 353 -KHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred -hhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 134567888888988873 456799999999999999999999999999999999999999999999999643
No 78
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.4e-28 Score=265.05 Aligned_cols=309 Identities=16% Similarity=0.205 Sum_probs=224.2
Q ss_pred HHHhhc-cCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEE
Q 001352 327 VAQTLI-EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 405 (1093)
Q Consensus 327 ~~~~l~-~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 405 (1093)
..|.+. .|.+.||++.||+||+| ||+|+.||.|+||.+...+...... -+. .|... . +. -.+.+..+.-
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKy-LAsaGeD~virVWkVie~e~~~~~~---~~~-~~~~~-~---~~-~~s~~~p~~s 327 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKY-LASAGEDGVIRVWKVIESERMRVAE---GDS-SCMYF-E---YN-ANSQIEPSTS 327 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCce-eeecCCCceEEEEEEeccchhcccc---ccc-chhhh-h---hh-hccccCcccc
Confidence 345556 89999999999999995 9999999999999997744321100 000 00000 0 00 0000111111
Q ss_pred CC---CCC--EEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeE
Q 001352 406 SP---DGS--LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 480 (1093)
Q Consensus 406 s~---dg~--~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~ 480 (1093)
++ .++ ..-.+.....+.+-+..-.-.-+++..+.||.+.|.+++||.++ +|++++.|++|++|++....|++
T Consensus 328 ~~~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~~~~CL~ 404 (712)
T KOG0283|consen 328 SEEKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPGRKECLK 404 (712)
T ss_pred ccccccccccccccccCCccccCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCCCcceee
Confidence 11 011 11112222222222211111123344788999999999999986 69999999999999999999999
Q ss_pred EeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001352 481 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 560 (1093)
Q Consensus 481 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~i 560 (1093)
.|. |...|+|++|+|..| +++++|+-||.||+|++...+.......+ .-|++++|+|||++.++|+. +|..++
T Consensus 405 ~F~-HndfVTcVaFnPvDD-ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~----~G~C~f 477 (712)
T KOG0283|consen 405 VFS-HNDFVTCVAFNPVDD-RYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTF----NGYCRF 477 (712)
T ss_pred EEe-cCCeeEEEEecccCC-CcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEe----ccEEEE
Confidence 996 999999999999855 79999999999999999876555544444 68999999999999999987 667999
Q ss_pred EeCCCCeeeeeeeccc-----ccCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecC
Q 001352 561 WNESEGAIKRTYQGLQ-----LQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 634 (1093)
Q Consensus 561 wd~~~~~~~~~~~~~~-----~~~~~v~~v~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 634 (1093)
|+...-+....+.-+. .....|+.+.|.|.. ..+++.+.|..|+|+|.++..++..+.+......-....|+.|
T Consensus 478 Y~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~D 557 (712)
T KOG0283|consen 478 YDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSD 557 (712)
T ss_pred EEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccC
Confidence 9988777665544322 112379999999754 3588999999999999999999988887665556678899999
Q ss_pred CCEEEEEECCCeEEEEEcCCC
Q 001352 635 GTLLAVIANENRIKILETPES 655 (1093)
Q Consensus 635 ~~~l~~~~~dg~i~iw~~~~~ 655 (1093)
|++|+++++|..|++|+....
T Consensus 558 gk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 558 GKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred CCEEEEeecCceEEEEeCCCC
Confidence 999999999999999998654
No 79
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=4.1e-26 Score=208.89 Aligned_cols=307 Identities=18% Similarity=0.210 Sum_probs=234.9
Q ss_pred HhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEE-eeeeeeecccccceeeeeeecCCCCCeEEEEECC
Q 001352 329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFI-RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 407 (1093)
Q Consensus 329 ~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~ 407 (1093)
.+|.. +..|.+++|+|.|. |.|+|+...+.+|-....-..++. ..-..+ ........-+.|.+.|.|.+|||
T Consensus 27 ~~l~d-sqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~hea~~~-----pp~v~~kr~khhkgsiyc~~ws~ 99 (350)
T KOG0641|consen 27 NILED-SQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHAHEAAKQ-----PPSVLCKRNKHHKGSIYCTAWSP 99 (350)
T ss_pred EEecc-hhheeeEEecCCCc-eEEeccCCceEEEEccccccCcccccccccC-----CCeEEeeeccccCccEEEEEecC
Confidence 33443 44899999999998 799999999998876533221110 000000 00011112457999999999999
Q ss_pred CCCEEEEEEcCCEEEEEEccC--CCcccceEEeccccccEEEEEeeCC---CCcEEEEEEc-CCCcEEEEECCCCceeEE
Q 001352 408 DGSLLGVAYSKHIVQLYAYHG--GSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCG-DDKTIKVWDAVTGSRTYS 481 (1093)
Q Consensus 408 dg~~las~~~d~~i~iwd~~~--~~~~~~~~~~~~h~~~v~~~~~s~d---~~~l~l~s~~-~d~~i~vwd~~~~~~~~~ 481 (1093)
+|++||+|+.|.+|++.-.+. ......-.++.-|.+.|..++|..+ +.. +|++++ .|..|++-|-.+|+..+.
T Consensus 100 ~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~~~a 178 (350)
T KOG0641|consen 100 CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQGFHA 178 (350)
T ss_pred ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCccee
Confidence 999999999999999876553 3334444568889999999999654 232 566654 577888889999999999
Q ss_pred eecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC-------CCCceEEEEEccCCCEEEEEecCCCC
Q 001352 482 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-------PGLGCTRMAYSANGRRLFSCGTSKEG 554 (1093)
Q Consensus 482 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-------~~~~v~~~~~s~d~~~l~~~~~~~~~ 554 (1093)
+.+|++.|.++-- =++.++++|+.|.+|++||++-...+.++.. ....|.++++.|.|++|+++..
T Consensus 179 ~sghtghilalys---wn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~---- 251 (350)
T KOG0641|consen 179 LSGHTGHILALYS---WNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA---- 251 (350)
T ss_pred ecCCcccEEEEEE---ecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC----
Confidence 9999999988742 2567999999999999999998777765532 2246899999999999999876
Q ss_pred ceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--eEEEEecCCCCCCCceEEEe
Q 001352 555 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ--LLTTIDAGGGLPENPRICFN 632 (1093)
Q Consensus 555 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~v~~s 632 (1093)
+....+||++.++.++.+..|. ..|.++.|+|...++++++.|..|++-|+...- .+..+-...+...+..+.|+
T Consensus 252 dssc~lydirg~r~iq~f~phs---adir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh 328 (350)
T KOG0641|consen 252 DSSCMLYDIRGGRMIQRFHPHS---ADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWH 328 (350)
T ss_pred CCceEEEEeeCCceeeeeCCCc---cceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEec
Confidence 5568999999999999999988 899999999999999999999999999987421 11111122233456788999
Q ss_pred cCCCEEEEEECCCeEEEEEcC
Q 001352 633 KNGTLLAVIANENRIKILETP 653 (1093)
Q Consensus 633 ~~~~~l~~~~~dg~i~iw~~~ 653 (1093)
|..--+++.+.|.+..+|.+.
T Consensus 329 ~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 329 PQDFSFISSSADKTATLWALN 349 (350)
T ss_pred CccceeeeccCcceEEEeccC
Confidence 998889999999999999764
No 80
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=3.4e-26 Score=257.01 Aligned_cols=288 Identities=12% Similarity=0.128 Sum_probs=223.8
Q ss_pred CCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC-CCCEE
Q 001352 334 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLL 412 (1093)
Q Consensus 334 h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~-dg~~l 412 (1093)
|-..|....+++|+.. +++++.+..+..|+...|..+. +.............+.+|.+.|.+++|+| ++.+|
T Consensus 19 ~~~~i~~~~~~~d~~~-~~~~n~~~~a~~w~~~gg~~v~------~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~L 91 (493)
T PTZ00421 19 HFLNVTPSTALWDCSN-TIACNDRFIAVPWQQLGSTAVL------KHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKL 91 (493)
T ss_pred ceeccccccccCCCCC-cEeECCceEEEEEecCCceEEe------eccccccCCCCCceEeCCCCCEEEEEEcCCCCCEE
Confidence 4457888888999764 6777778888899887664331 11111111112234789999999999999 89999
Q ss_pred EEEEcCCEEEEEEccCCCc----ccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCC
Q 001352 413 GVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 488 (1093)
Q Consensus 413 as~~~d~~i~iwd~~~~~~----~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~ 488 (1093)
|+|+.|++|++||+.++.. ......+.+|...|.+++|+|++.. +|++++.|++|+|||+.+++.+..+.+|...
T Consensus 92 aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~ 170 (493)
T PTZ00421 92 FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQ 170 (493)
T ss_pred EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCc
Confidence 9999999999999986532 1234468899999999999998644 7999999999999999999999999999999
Q ss_pred eEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCc-eEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001352 489 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLG-CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 567 (1093)
Q Consensus 489 v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~ 567 (1093)
|.+++|++ ++.+|++++.||.|++||++++.....+..|.+. ...+.|.+++..+++++.++..++.|++||+++..
T Consensus 171 V~sla~sp--dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 171 ITSLEWNL--DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred eEEEEEEC--CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 99999965 6789999999999999999998888888777654 45678899988888877655557889999998754
Q ss_pred e-eeeeecccccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEecCCCCCCCceEEEecC
Q 001352 568 I-KRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 634 (1093)
Q Consensus 568 ~-~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 634 (1093)
. ......+. ...+....|+++++.+++++ .|+.|++||+.+++......... ...+..++|.|.
T Consensus 249 ~p~~~~~~d~--~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s-~~~~~g~~~~pk 314 (493)
T PTZ00421 249 SPYSTVDLDQ--SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSS-VEPHKGLCMMPK 314 (493)
T ss_pred CceeEeccCC--CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccC-CCCCcceEeccc
Confidence 3 33332222 24566678999999999887 59999999999998877654432 235778888884
No 81
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=6.9e-27 Score=262.09 Aligned_cols=283 Identities=17% Similarity=0.289 Sum_probs=248.1
Q ss_pred CCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEE
Q 001352 334 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 413 (1093)
Q Consensus 334 h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~la 413 (1093)
|...+.|..|. ++ .+++|+.|++|++||..++..+.. -+.||.+.|.+++|..-+.+|+
T Consensus 207 ~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~~lv 265 (537)
T KOG0274|consen 207 DDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGDKLV 265 (537)
T ss_pred Ccchhhhheee-cC--eEEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCCEEE
Confidence 56688899999 55 389999999999999999987754 1779999999999998889999
Q ss_pred EEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEee
Q 001352 414 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC 493 (1093)
Q Consensus 414 s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~ 493 (1093)
+|+.|.++++||..+|++.. .+.+|...|.++...+. ++++|+.|.+|++|++.++.+++.+.+|.++|+++.
T Consensus 266 sgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~ 338 (537)
T KOG0274|consen 266 SGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQ 338 (537)
T ss_pred EEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEEEEE
Confidence 99999999999999998777 78899999999987653 688999999999999999999999999999999998
Q ss_pred ecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC-eeeeee
Q 001352 494 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG-AIKRTY 572 (1093)
Q Consensus 494 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~ 572 (1093)
.. +.++++|+.||+|++||+.+.+.+..+.+|...|.++.+.+. ..+++++. |..|++||+.++ +++.++
T Consensus 339 ~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~----D~~IkvWdl~~~~~c~~tl 409 (537)
T KOG0274|consen 339 LD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSL----DTTIKVWDLRTKRKCIHTL 409 (537)
T ss_pred ec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeee----ccceEeecCCchhhhhhhh
Confidence 73 569999999999999999999999999999999999988766 88889887 567999999999 999999
Q ss_pred ecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEc
Q 001352 573 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 652 (1093)
Q Consensus 573 ~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 652 (1093)
.+|. .-+..+.+ .++++++++.|++|++||..+++++..+... +...|..+++. ...+++++.+|.+++||+
T Consensus 410 ~~h~---~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~dl 481 (537)
T KOG0274|consen 410 QGHT---SLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWDL 481 (537)
T ss_pred cCCc---cccccccc--ccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceEEEEecCCeeEEEec
Confidence 9988 55654444 5689999999999999999999999999874 23346666655 468999999999999999
Q ss_pred CCCceeeec
Q 001352 653 PESNSVDAA 661 (1093)
Q Consensus 653 ~~~~~~~~~ 661 (1093)
.++.....+
T Consensus 482 ~~~~~~~~l 490 (537)
T KOG0274|consen 482 RSGTLIRTL 490 (537)
T ss_pred ccCchhhhh
Confidence 998777655
No 82
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=8.2e-27 Score=262.35 Aligned_cols=306 Identities=17% Similarity=0.230 Sum_probs=239.1
Q ss_pred cccceEEEEeecCCceEEEee--ccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEE
Q 001352 734 KANKISRLTYNNGGQAIFALA--SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 811 (1093)
Q Consensus 734 ~~~~i~~l~~s~~g~~l~~~~--~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 811 (1093)
+...|.++..+|+|..+++++ .||.+++|+...-.. ....++..-...+... ..|.+.|.|+.|
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~----------~~~~~~~~l~k~l~~m----~~h~~sv~CVR~ 77 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD----------EKEEKNENLPKHLCTM----DDHDGSVNCVRF 77 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccc----------hhhhhhcccchhheee----ccccCceeEEEE
Confidence 455689999999999999999 888899998653211 1111222111111111 139999999999
Q ss_pred ccCCCEEEEEeC-CeEEEEEccC------------------ceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEE
Q 001352 812 SKNDAYLFSASG-GVISLYIVMT------------------FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY 872 (1093)
Q Consensus 812 s~dg~~la~~~d-g~i~iwd~~~------------------~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iw 872 (1093)
+|||++||+|+| ..|.||+... ++.+..+.+|...|..++|+| ++.+||+++.|++|.||
T Consensus 78 S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiw 156 (942)
T KOG0973|consen 78 SPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIW 156 (942)
T ss_pred CCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEE
Confidence 999999999995 7789998762 346778999999999999999 99999999999999999
Q ss_pred EcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEE
Q 001352 873 NARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 952 (1093)
Q Consensus 873 d~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 952 (1093)
|..+.+.+.++++|.+.|-.+.|.|-|++|||-+.|++|+||++......+ .+..+..+......+..+.|||||.+|
T Consensus 157 n~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k--~It~pf~~~~~~T~f~RlSWSPDG~~l 234 (942)
T KOG0973|consen 157 NAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEK--SITKPFEESPLTTFFLRLSWSPDGHHL 234 (942)
T ss_pred ccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeE--eeccchhhCCCcceeeecccCCCcCee
Confidence 999999999999999999999999999999999999999999987744333 444444444444568899999999999
Q ss_pred EE--EeC---CeEEEEEcCCcceeeeeecCCCCCEEEEEEcc--------CC-----C----EEEEEeCCCcEEEEEcCC
Q 001352 953 LL--VHE---THLAIYEAEELTCLKQWFPISSVPISQATFSC--------DC-----R----MVFTSFVDGTLSIHEASN 1010 (1093)
Q Consensus 953 ~~--~~d---~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~--------dg-----~----~l~t~~~dg~v~vwd~~~ 1010 (1093)
++ +.+ ..+.|.+-.+-+.-.. +.||.+++..++|+| +| . .+|+|+.|++|.||....
T Consensus 235 as~nA~n~~~~~~~IieR~tWk~~~~-LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~ 313 (942)
T KOG0973|consen 235 ASPNAVNGGKSTIAIIERGTWKVDKD-LVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL 313 (942)
T ss_pred cchhhccCCcceeEEEecCCceeeee-eecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence 98 322 3688888765555444 568999999999998 11 1 688999999999999977
Q ss_pred CceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecCCCCCC
Q 001352 1011 LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDT 1067 (1093)
Q Consensus 1011 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~~~ 1067 (1093)
.+.+..+. .. .+. ..+.++|+| ||..|++++.||+|.+..+.+.+..
T Consensus 314 ~RPl~vi~--~l-----f~~--SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~ElG 360 (942)
T KOG0973|consen 314 PRPLFVIH--NL-----FNK--SIVDMSWSP-DGFSLFACSLDGTVALIHFEEKELG 360 (942)
T ss_pred CCchhhhh--hh-----hcC--ceeeeeEcC-CCCeEEEEecCCeEEEEEcchHHhC
Confidence 66653332 11 112 235889999 6999999999999999999776653
No 83
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=6.1e-27 Score=218.94 Aligned_cols=284 Identities=17% Similarity=0.247 Sum_probs=227.2
Q ss_pred eeeeecC--CCceEEEEEc-----cCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC-CC
Q 001352 339 MSMDFHP--VQHTLLLVGT-----NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-GS 410 (1093)
Q Consensus 339 ~~~~~sp--dg~~llasg~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d-g~ 410 (1093)
.++.||| +++..+|++. ..|++.|-++..++-+.... -+ .-.+.+..++||++ ..
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~--s~---------------d~~D~LfdV~Wse~~e~ 74 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQ--SY---------------DTEDGLFDVAWSENHEN 74 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEE--ee---------------ecccceeEeeecCCCcc
Confidence 5789998 4553344443 25889999997555443211 11 14578999999995 56
Q ss_pred EEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeE
Q 001352 411 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 490 (1093)
Q Consensus 411 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~ 490 (1093)
.+++++.||++++||+.... .++..++.|...|.++.|++..++ .+++++-|++|++|+...++.++++.+|...|+
T Consensus 75 ~~~~a~GDGSLrl~d~~~~s--~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy 151 (311)
T KOG0277|consen 75 QVIAASGDGSLRLFDLTMPS--KPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIY 151 (311)
T ss_pred eEEEEecCceEEEeccCCCC--cchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEEE
Confidence 78889999999999965433 455578899999999999998776 677779999999999999999999999999999
Q ss_pred EeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCC-CEEEEEecCCCCceeEEEEeCCCC-ee
Q 001352 491 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNESEG-AI 568 (1093)
Q Consensus 491 ~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~~~~~~~~~~~~i~iwd~~~~-~~ 568 (1093)
...|+|. ...++++++.||.+++||++.......+..|...+.++.|+.-. +.+++++. ++.|+.||++.- .+
T Consensus 152 ~a~~sp~-~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~v----d~~vr~wDir~~r~p 226 (311)
T KOG0277|consen 152 QAAFSPH-IPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGV----DNLVRGWDIRNLRTP 226 (311)
T ss_pred EEecCCC-CCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCC----CceEEEEehhhcccc
Confidence 9999987 44699999999999999999988888899999999999999854 55566654 778999999864 45
Q ss_pred eeeeecccccCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCc-eEEEEecCCCCCCCceEEEec-CCCEEEEEECCC
Q 001352 569 KRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQ-LLTTIDAGGGLPENPRICFNK-NGTLLAVIANEN 645 (1093)
Q Consensus 569 ~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg 645 (1093)
+..+.+|. -.|..+.|+|.. ..|++++.|-+++|||...+. .+.+...| ..-+..+.|++ ++.++|..+.|+
T Consensus 227 l~eL~gh~---~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~H--tEFv~g~Dws~~~~~~vAs~gWDe 301 (311)
T KOG0277|consen 227 LFELNGHG---LAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHH--TEFVCGLDWSLFDPGQVASTGWDE 301 (311)
T ss_pred ceeecCCc---eEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhcc--ceEEeccccccccCceeeeccccc
Confidence 66777777 899999999975 567789999999999998543 44444444 34577788887 678999999999
Q ss_pred eEEEEEc
Q 001352 646 RIKILET 652 (1093)
Q Consensus 646 ~i~iw~~ 652 (1093)
.++||+.
T Consensus 302 ~l~Vw~p 308 (311)
T KOG0277|consen 302 LLYVWNP 308 (311)
T ss_pred ceeeecc
Confidence 9999984
No 84
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3e-25 Score=215.85 Aligned_cols=272 Identities=16% Similarity=0.187 Sum_probs=228.6
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcC--CCcEEE
Q 001352 393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--DKTIKV 470 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~--d~~i~v 470 (1093)
+....+.|.++.|+++|.+|++++.|.++++||..+++.++ ++..+...|..++|..... .++.++. |.+|+.
T Consensus 10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~---ti~skkyG~~~~~Fth~~~--~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVK---TINSKKYGVDLACFTHHSN--TVIHSSTKEDDTIRY 84 (311)
T ss_pred cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceee---EeecccccccEEEEecCCc--eEEEccCCCCCceEE
Confidence 44567899999999999999999999999999999998776 6667777899999988877 4555554 889999
Q ss_pred EECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEec
Q 001352 471 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 550 (1093)
Q Consensus 471 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 550 (1093)
-++.+.+.++.|.||...|++++.+|.+ ..+++++.|++|++||++..++...+.....++ .+|.|.|-.+|++..
T Consensus 85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~--d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 85 LSLHDNKYLRYFPGHKKRVNSLSVSPKD--DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGLIFALANG 160 (311)
T ss_pred EEeecCceEEEcCCCCceEEEEEecCCC--CeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCCCcEEEEecC
Confidence 9999999999999999999999998765 589999999999999999888777666555554 789999999998864
Q ss_pred CCCCceeEEEEeCCCC--eeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCC-c
Q 001352 551 SKEGESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN-P 627 (1093)
Q Consensus 551 ~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v-~ 627 (1093)
...|.+||++.- .+..++.-..........+.|+|||++++.+...+.+++.|.-+|..+..+..+.....+ .
T Consensus 161 ----~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~ 236 (311)
T KOG1446|consen 161 ----SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPL 236 (311)
T ss_pred ----CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcce
Confidence 336999999863 344444443223467899999999999999999999999999999999988876543322 4
Q ss_pred eEEEecCCCEEEEEECCCeEEEEEcCCCceeeeccc-ccccceeeeecCCC
Q 001352 628 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGV-LSDNLRKLSVNPIS 677 (1093)
Q Consensus 628 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~i~~~~~~~~~ 677 (1093)
..+|+||++++++|+.||+|.+|+++++..+..+++ +..++.++.|+|..
T Consensus 237 ~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~ 287 (311)
T KOG1446|consen 237 SATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRY 287 (311)
T ss_pred eEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCce
Confidence 678999999999999999999999999999999888 57788888887543
No 85
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=4.8e-26 Score=213.89 Aligned_cols=252 Identities=16% Similarity=0.241 Sum_probs=212.3
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352 393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 472 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 472 (1093)
+.+|...|.+++|+.+|.+||+|+.|+++.+|+++..+... .....+|.+.|-.++|.|.... .+++++.|++|++||
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~-~~~~~gh~~svdql~w~~~~~d-~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRK-ELVYRGHTDSVDQLCWDPKHPD-LFATASGDKTIRIWD 93 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhh-hhcccCCCcchhhheeCCCCCc-ceEEecCCceEEEEE
Confidence 66799999999999999999999999999999999875433 3356799999999999998766 799999999999999
Q ss_pred CCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001352 473 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 552 (1093)
Q Consensus 473 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~ 552 (1093)
+.++++...+....+.++. +| +++|.+++.++.|..|.+.|.++.+....... ...+..++|+.++.+++...
T Consensus 94 ~r~~k~~~~i~~~~eni~i-~w--sp~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~~~nd~Fflt~--- 166 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINI-TW--SPDGEYIAVGNKDDRITFIDARTYKIVNEEQF-KFEVNEISWNNSNDLFFLTN--- 166 (313)
T ss_pred eccCcEEEEeeccCcceEE-EE--cCCCCEEEEecCcccEEEEEecccceeehhcc-cceeeeeeecCCCCEEEEec---
Confidence 9999999988766555553 45 56778999999999999999987665544332 33567788887777766553
Q ss_pred CCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEe
Q 001352 553 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 632 (1093)
Q Consensus 553 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 632 (1093)
|.|+|.|.....-+++..++.|. ....|+.|+|+|+++++|+.|-.+.+||++.--+++.+.... -+|..+.||
T Consensus 167 -GlG~v~ILsypsLkpv~si~AH~---snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRld--wpVRTlSFS 240 (313)
T KOG1407|consen 167 -GLGCVEILSYPSLKPVQSIKAHP---SNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLD--WPVRTLSFS 240 (313)
T ss_pred -CCceEEEEeccccccccccccCC---cceEEEEECCCCceEeeccccceeeccChhHhhhheeecccc--CceEEEEec
Confidence 36789998888889999999988 888999999999999999999999999999888888887553 469999999
Q ss_pred cCCCEEEEEECCCeEEEEEcCCCceee
Q 001352 633 KNGTLLAVIANENRIKILETPESNSVD 659 (1093)
Q Consensus 633 ~~~~~l~~~~~dg~i~iw~~~~~~~~~ 659 (1093)
.||++||+++.|..|-|=++.++..+.
T Consensus 241 ~dg~~lASaSEDh~IDIA~vetGd~~~ 267 (313)
T KOG1407|consen 241 HDGRMLASASEDHFIDIAEVETGDRVW 267 (313)
T ss_pred cCcceeeccCccceEEeEecccCCeEE
Confidence 999999999999999988888775443
No 86
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.7e-26 Score=246.06 Aligned_cols=279 Identities=18% Similarity=0.266 Sum_probs=240.1
Q ss_pred ceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEc
Q 001352 338 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS 417 (1093)
Q Consensus 338 V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~ 417 (1093)
..-++||..+ +||+|.. ..|.+|+..++....... -+...|+++.|+++|++||+|..
T Consensus 180 ~nlldWss~n--~laValg-~~vylW~~~s~~v~~l~~-------------------~~~~~vtSv~ws~~G~~LavG~~ 237 (484)
T KOG0305|consen 180 LNLLDWSSAN--VLAVALG-QSVYLWSASSGSVTELCS-------------------FGEELVTSVKWSPDGSHLAVGTS 237 (484)
T ss_pred hhHhhcccCC--eEEEEec-ceEEEEecCCCceEEeEe-------------------cCCCceEEEEECCCCCEEEEeec
Confidence 4457788665 4777653 579999999998664322 24789999999999999999999
Q ss_pred CCEEEEEEccCCCcccceEEecc-ccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEE-eecCCCCeEEeeec
Q 001352 418 KHIVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPVYSLCPH 495 (1093)
Q Consensus 418 d~~i~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~-~~~h~~~v~~~~~~ 495 (1093)
+|.|.|||..+.+.++ .+.+ |...|-+++|.. . .+.+|+.|+.|..+|+...+.... +.+|...|..+.|+
T Consensus 238 ~g~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~~--~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws 310 (484)
T KOG0305|consen 238 DGTVQIWDVKEQKKTR---TLRGSHASRVGSLAWNS--S--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS 310 (484)
T ss_pred CCeEEEEehhhccccc---cccCCcCceeEEEeccC--c--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC
Confidence 9999999999887666 5667 999999999993 3 799999999999999998877655 88999999999995
Q ss_pred ccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEcc-CCCEEEEEecCCCCceeEEEEeCCCCeeeeeeec
Q 001352 496 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 574 (1093)
Q Consensus 496 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 574 (1093)
+|+.++++|+.|+.+.|||.........+..|...|..++|+| ....||+|+. ..|++|++||..+|..+.....
T Consensus 311 --~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG--s~D~~i~fwn~~~g~~i~~vdt 386 (484)
T KOG0305|consen 311 --PDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG--SADRCIKFWNTNTGARIDSVDT 386 (484)
T ss_pred --CCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC--CcccEEEEEEcCCCcEeccccc
Confidence 5778999999999999999999999999999999999999999 4567777754 4588999999999999887765
Q ss_pred ccccCCCeEEEEEcCCCCEEEE--EeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEc
Q 001352 575 LQLQHNSVSVVHFDTAKDQILA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 652 (1093)
Q Consensus 575 ~~~~~~~v~~v~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 652 (1093)
. ..|..+.|++..+.+++ |..++.|.||+..+.+.+..+.+|. ..|..++++|||..+++|+.|.++++|++
T Consensus 387 g----sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~--~RVl~la~SPdg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 387 G----SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHT--SRVLYLALSPDGETIVTGAADETLRFWNL 460 (484)
T ss_pred C----CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCc--ceeEEEEECCCCCEEEEecccCcEEeccc
Confidence 3 57999999999877777 5577899999999988888888764 46999999999999999999999999998
Q ss_pred CCC
Q 001352 653 PES 655 (1093)
Q Consensus 653 ~~~ 655 (1093)
-..
T Consensus 461 f~~ 463 (484)
T KOG0305|consen 461 FDE 463 (484)
T ss_pred cCC
Confidence 764
No 87
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=2.9e-26 Score=226.78 Aligned_cols=281 Identities=15% Similarity=0.190 Sum_probs=233.7
Q ss_pred CCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCC-cEEEEEEcCCCcEEEEEC
Q 001352 395 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK-QISVITCGDDKTIKVWDA 473 (1093)
Q Consensus 395 ~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~-~l~l~s~~~d~~i~vwd~ 473 (1093)
-|.+.|.++... ++++++|+.||.+++||.... ....+.||.++|.+++|.-... .-.+++++.|.++++|-+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk----~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~ 176 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK----SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKW 176 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecCCc----eEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEe
Confidence 388999999887 889999999999999998863 2336789999999888843322 115999999999999998
Q ss_pred CCCce----eEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcC-------------------------CCCceE
Q 001352 474 VTGSR----TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-------------------------SLGARV 524 (1093)
Q Consensus 474 ~~~~~----~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~-------------------------~~~~~~ 524 (1093)
+.++. ++.-+||...|.++.. .+++..+++|+.|.+|++|+.. ...++.
T Consensus 177 ~~~~~~~~~~~~~~GHk~~V~sVsv--~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v 254 (423)
T KOG0313|consen 177 NVGENKVKALKVCRGHKRSVDSVSV--DSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV 254 (423)
T ss_pred cCchhhhhHHhHhcccccceeEEEe--cCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceE
Confidence 87754 3444699999999987 5577899999999999999832 122345
Q ss_pred EecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 001352 525 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 604 (1093)
Q Consensus 525 ~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~ 604 (1093)
.+.+|..+|.++.|++ ...+++++. |.+|+.||+.++..+..+.+. ..+.++..+|..+.|++|+.|..++
T Consensus 255 tl~GHt~~Vs~V~w~d-~~v~yS~Sw----DHTIk~WDletg~~~~~~~~~----ksl~~i~~~~~~~Ll~~gssdr~ir 325 (423)
T KOG0313|consen 255 TLEGHTEPVSSVVWSD-ATVIYSVSW----DHTIKVWDLETGGLKSTLTTN----KSLNCISYSPLSKLLASGSSDRHIR 325 (423)
T ss_pred EecccccceeeEEEcC-CCceEeecc----cceEEEEEeecccceeeeecC----cceeEeecccccceeeecCCCCcee
Confidence 6788899999999988 667778876 788999999999999888774 4899999999999999999999999
Q ss_pred EEECCCCce---EEEEecCCCCCCCceEEEec-CCCEEEEEECCCeEEEEEcCCCc-eeeecccccccceeeeecCCCce
Q 001352 605 IWDMNKVQL---LTTIDAGGGLPENPRICFNK-NGTLLAVIANENRIKILETPESN-SVDAAGVLSDNLRKLSVNPISTV 679 (1093)
Q Consensus 605 iwd~~~~~~---~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~ 679 (1093)
+||.+++.- ..++.+ +...|.++.|+| +...|++++.|+++++||+++.. ++..+.+|.+.|.++.|+
T Consensus 326 l~DPR~~~gs~v~~s~~g--H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~----- 398 (423)
T KOG0313|consen 326 LWDPRTGDGSVVSQSLIG--HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN----- 398 (423)
T ss_pred ecCCCCCCCceeEEeeec--chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-----
Confidence 999987642 234444 455799999999 55678899999999999999887 899999999999988886
Q ss_pred eeeeccCCceEecCCCCCCCccceeecccccceeccee
Q 001352 680 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 717 (1093)
Q Consensus 680 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~ 717 (1093)
++..+++|+.|++++++...
T Consensus 399 ------------------~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 399 ------------------EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred ------------------CCceEEeccCcceEEEeccc
Confidence 57789999999999998743
No 88
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.9e-26 Score=236.14 Aligned_cols=282 Identities=15% Similarity=0.217 Sum_probs=230.9
Q ss_pred cccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEcc
Q 001352 734 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 813 (1093)
Q Consensus 734 ~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 813 (1093)
..+.|.+++|+|...+=++.+..-.+.+|+...... ... +. .....+.++.|-.
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~----------------------~k~--~s--rFk~~v~s~~fR~ 78 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSV----------------------RKT--FS--RFKDVVYSVDFRS 78 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchhhh----------------------hhh--HH--hhccceeEEEeec
Confidence 456899999999877666666666777776433211 110 00 1567889999999
Q ss_pred CCCEEEEEeC-CeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEE
Q 001352 814 NDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG 892 (1093)
Q Consensus 814 dg~~la~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~ 892 (1093)
||+++|.|++ |.|+|+|+.+...++.+.+|..++..+.|+|+++..+++|+.|+.+++||+.+......+.+|.+.|.|
T Consensus 79 DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~ 158 (487)
T KOG0310|consen 79 DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRC 158 (487)
T ss_pred CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEe
Confidence 9999999985 999999988877888999999999999999999999999999999999999998877789999999999
Q ss_pred EEEeCC-CCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCccee
Q 001352 893 LVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCL 971 (1093)
Q Consensus 893 l~~s~d-g~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~ 971 (1093)
.+|+|- +.+++|||.||.|++||+.... ........+ .+|..+.|-|.|..+|++..+.|+|||+.+|...
T Consensus 159 g~~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v~elnhg-----~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~ql 230 (487)
T KOG0310|consen 159 GDISPANDHIVVTGSYDGKVRLWDTRSLT---SRVVELNHG-----CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQL 230 (487)
T ss_pred eccccCCCeEEEecCCCceEEEEEeccCC---ceeEEecCC-----CceeeEEEcCCCCEEEEcCCCeEEEEEecCCcee
Confidence 999995 4589999999999999998732 122332222 3699999999999999999999999999977655
Q ss_pred eeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEe
Q 001352 972 KQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGL 1051 (1093)
Q Consensus 972 ~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~ 1051 (1093)
......|...|+|+++..|++.|++++-|+.|++||+.+.+.+..+.. |. +| ++++.+| |++.+++|.
T Consensus 231 l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~----~~-----pv--Lsiavs~-dd~t~viGm 298 (487)
T KOG0310|consen 231 LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY----PG-----PV--LSIAVSP-DDQTVVIGM 298 (487)
T ss_pred hhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec----cc-----ce--eeEEecC-CCceEEEec
Confidence 544555999999999999999999999999999999999988877762 12 23 5677788 578999999
Q ss_pred CCCcEEEEec
Q 001352 1052 TNGEVYVIEP 1061 (1093)
Q Consensus 1052 ~dg~v~~w~~ 1061 (1093)
.+|.+.+-+.
T Consensus 299 snGlv~~rr~ 308 (487)
T KOG0310|consen 299 SNGLVSIRRR 308 (487)
T ss_pred ccceeeeehh
Confidence 9999887744
No 89
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=7.6e-27 Score=239.23 Aligned_cols=307 Identities=18% Similarity=0.234 Sum_probs=239.0
Q ss_pred CchHHHHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeE
Q 001352 322 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 401 (1093)
Q Consensus 322 ~~p~~~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 401 (1093)
..|..+-..|.+|+..|+++++.|.|-+ +++|+.|.+|++||......... .|+ .+.......|.
T Consensus 154 ~IP~shEi~l~hgtk~Vsal~~Dp~GaR-~~sGs~Dy~v~~wDf~gMdas~~-~fr-------------~l~P~E~h~i~ 218 (641)
T KOG0772|consen 154 LIPGSHEIQLKHGTKIVSALAVDPSGAR-FVSGSLDYTVKFWDFQGMDASMR-SFR-------------QLQPCETHQIN 218 (641)
T ss_pred cCCccceEeccCCceEEEEeeecCCCce-eeeccccceEEEEecccccccch-hhh-------------ccCcccccccc
Confidence 3445555678899999999999999997 89999999999999976543321 111 12344567899
Q ss_pred EEEECCCCCEEEEEEcCCEEEEEEccCCCc---------ccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352 402 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSD---------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 472 (1093)
Q Consensus 402 ~v~~s~dg~~las~~~d~~i~iwd~~~~~~---------~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 472 (1093)
+++||+.|..|++.+.....+|+|-...+. ++....-+||...++|.+|+|+.+. .++|++.||++||||
T Consensus 219 sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~-~FlT~s~DgtlRiWd 297 (641)
T KOG0772|consen 219 SLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE-EFLTCSYDGTLRIWD 297 (641)
T ss_pred eeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCccc-ceEEecCCCcEEEEe
Confidence 999999999999999888999999765432 2233345699999999999999987 799999999999999
Q ss_pred CCCCce-eEEee-----cCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceE---EecCCCC--ceEEEEEccC
Q 001352 473 AVTGSR-TYSFE-----GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGL--GCTRMAYSAN 541 (1093)
Q Consensus 473 ~~~~~~-~~~~~-----~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~~~~--~v~~~~~s~d 541 (1093)
+..-+. ++.++ +..-++++++| ++|+.+|++|+.||.|.+|+........ .-..|.. .|++++||+|
T Consensus 298 v~~~k~q~qVik~k~~~g~Rv~~tsC~~--nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~d 375 (641)
T KOG0772|consen 298 VNNTKSQLQVIKTKPAGGKRVPVTSCAW--NRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYD 375 (641)
T ss_pred cCCchhheeEEeeccCCCcccCceeeec--CCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccc
Confidence 976543 33332 23456778888 5577899999999999999976543322 2334444 8999999999
Q ss_pred CCEEEEEecCCCCceeEEEEeCCCC-eeeeeeecccccCCCeEEEEEcCCCCEEEEEe------CCCcEEEEECCCCceE
Q 001352 542 GRRLFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG------DDHVIKIWDMNKVQLL 614 (1093)
Q Consensus 542 ~~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~ 614 (1093)
|++|++=+. +..+++||++.. +++....+.. ...+-+.++|+|+.+.|++|. ..|.+++||..+...+
T Consensus 376 g~~LlSRg~----D~tLKvWDLrq~kkpL~~~tgL~-t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v 450 (641)
T KOG0772|consen 376 GNYLLSRGF----DDTLKVWDLRQFKKPLNVRTGLP-TPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTV 450 (641)
T ss_pred cchhhhccC----CCceeeeeccccccchhhhcCCC-ccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeE
Confidence 999998765 677999999875 4455544433 124567789999999999975 4578999999999999
Q ss_pred EEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcC
Q 001352 615 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 653 (1093)
Q Consensus 615 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 653 (1093)
..+... ...|..+.|+|.-+.+.+++.||.+++|--.
T Consensus 451 ~ki~i~--~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 451 YKIDIS--TASVVRCLWHPKLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred EEecCC--CceEEEEeecchhhheeeecCCCceEEEECc
Confidence 988766 4568889999999999999999999997544
No 90
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=7.8e-26 Score=217.13 Aligned_cols=275 Identities=18% Similarity=0.238 Sum_probs=219.5
Q ss_pred CCCceeeeecCCCceEEEEEccCCcEEEEecCC-CceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEE
Q 001352 335 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 413 (1093)
Q Consensus 335 ~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~la 413 (1093)
.+.|.+++|||....+++.||-||+||+|+++. |.... .....|.++|.+++|+.||..++
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v~WsddgskVf 88 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDDGSKVF 88 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEEEEccCCceEE
Confidence 568999999996667888999999999999987 33332 12556999999999999999999
Q ss_pred EEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEee
Q 001352 414 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC 493 (1093)
Q Consensus 414 s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~ 493 (1093)
+|+.|+.+++||+.+++.. .+..|.++|.++.|-+...+..|+||+.|++|+.||.+...++.++. -...++++.
T Consensus 89 ~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~D 163 (347)
T KOG0647|consen 89 SGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAAD 163 (347)
T ss_pred eeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehh
Confidence 9999999999999998533 46789999999999887665589999999999999999999998886 566777775
Q ss_pred ecccCCccEEEEEecCCeEEEEEcCCCCceEEec--CCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC--eee
Q 001352 494 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG--AIK 569 (1093)
Q Consensus 494 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~--~~~ 569 (1093)
. -..+++.+..++.|.+|+++......... .-.-.+++++..+|....+.|+. +|++-+..+..+ +.-
T Consensus 164 v----~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi----EGrv~iq~id~~~~~~n 235 (347)
T KOG0647|consen 164 V----LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI----EGRVAIQYIDDPNPKDN 235 (347)
T ss_pred c----cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee----cceEEEEecCCCCccCc
Confidence 4 22488999999999999997654433221 12336889999898888888876 556777766665 444
Q ss_pred eeeeccccc------CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEE
Q 001352 570 RTYQGLQLQ------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 642 (1093)
Q Consensus 570 ~~~~~~~~~------~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 642 (1093)
-.|+.|... -..|.+++|+|....|++++.||++.+||-.....+...+.+ ..+|++.+|+.+|.++|.+.
T Consensus 236 FtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~--~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 236 FTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETH--PQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred eeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcC--CCccceeEecCCCCEEEEEe
Confidence 556666521 135788999999999999999999999998877777665544 45699999999999888664
No 91
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=3.8e-26 Score=231.95 Aligned_cols=292 Identities=14% Similarity=0.197 Sum_probs=234.6
Q ss_pred HhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeec----ccccceeeeeeecCCCCCeEEEE
Q 001352 329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDI----GACSMLFKTALVRDPGVSVNRVV 404 (1093)
Q Consensus 329 ~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~h~~~V~~v~ 404 (1093)
+.+..|.-.|.|++++||+++ ..+++.+|+|.=|++.+|+.... +|.- ..-..+++..- .+|...|.+++
T Consensus 136 ~~~~~H~~s~~~vals~d~~~-~fsask~g~i~kw~v~tgk~~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~a 209 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKR-VFSASKDGTILKWDVLTGKKDRY----IIERDEVLKSHGNPLKESR-KGHVKEILTLA 209 (479)
T ss_pred eeeccccCcceEEEeeccccc-eeecCCCcceeeeehhcCccccc----ccccchhhhhccCCCCccc-ccccceeEEEE
Confidence 455678889999999999996 89999999999999999986531 1211 11122333222 48999999999
Q ss_pred ECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeec
Q 001352 405 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 484 (1093)
Q Consensus 405 ~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~ 484 (1093)
.|+||+|||+|+.|..|.||+..+.+.++ .+.+|.+.|.+++|-.... -+++++.|.+|++|+++....+.++-+
T Consensus 210 vS~Dgkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetlyG 284 (479)
T KOG0299|consen 210 VSSDGKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLYG 284 (479)
T ss_pred EcCCCcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHhC
Confidence 99999999999999999999999988776 6889999999999987766 589999999999999999999999999
Q ss_pred CCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001352 485 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 564 (1093)
Q Consensus 485 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 564 (1093)
|...|..+.... -+..+-+|+.|+++++|++ ..+....+.++.+.+.|++|-.+ ..+++|+. +|.|.+|++.
T Consensus 285 Hqd~v~~IdaL~--reR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~-~HfvsGSd----nG~IaLWs~~ 356 (479)
T KOG0299|consen 285 HQDGVLGIDALS--RERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFIND-EHFVSGSD----NGSIALWSLL 356 (479)
T ss_pred Cccceeeechhc--ccceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEecc-cceeeccC----CceEEEeeec
Confidence 999999987643 3345666669999999999 45566677888889999999755 46677765 6779999999
Q ss_pred CCeeeeeeeccc-cc--------CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC----ceEEEEecCCCCCCCceEEE
Q 001352 565 EGAIKRTYQGLQ-LQ--------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGGLPENPRICF 631 (1093)
Q Consensus 565 ~~~~~~~~~~~~-~~--------~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~v~~ 631 (1093)
..+++.+....+ .. ...|++++..|..+.+++|+.+|.|++|-+..+ .++..++.. ..|++++|
T Consensus 357 KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~---GfVNsl~f 433 (479)
T KOG0299|consen 357 KKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLV---GFVNSLAF 433 (479)
T ss_pred ccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccc---cEEEEEEE
Confidence 988876654321 11 127899999999999999999999999999887 344444433 45899999
Q ss_pred ecCCCEEEEEE
Q 001352 632 NKNGTLLAVIA 642 (1093)
Q Consensus 632 s~~~~~l~~~~ 642 (1093)
+++|+.+++|.
T Consensus 434 ~~sgk~ivagi 444 (479)
T KOG0299|consen 434 SNSGKRIVAGI 444 (479)
T ss_pred ccCCCEEEEec
Confidence 99999777663
No 92
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.1e-25 Score=217.14 Aligned_cols=313 Identities=13% Similarity=0.157 Sum_probs=235.5
Q ss_pred eeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccc
Q 001352 658 VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANK 737 (1093)
Q Consensus 658 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 737 (1093)
+..+++|...|++++|+ .||+++++++.|++|++|++..-....-..++.. ...+.
T Consensus 79 ~~~LKgH~~~vt~~~Fs----------------------SdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n--ve~dh 134 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFS----------------------SDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN--VEYDH 134 (420)
T ss_pred hhhhhccCCceeeeEEc----------------------CCCceeEEEeCCceEEEEecchhhhhhhhHhhcc--ccCCC
Confidence 34678999999999996 7899999999999999999764332222222221 13346
Q ss_pred eEEEEeecCCceEEEeecc-ceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCC
Q 001352 738 ISRLTYNNGGQAIFALASN-GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 816 (1093)
Q Consensus 738 i~~l~~s~~g~~l~~~~~d-g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 816 (1093)
.+.++|+||-+.++..... ..+++|.+..... |.... ...-||-.. ++ .-|...+..+-...+++
T Consensus 135 pT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d---G~~~~--~~v~~D~~~--------f~-~kh~v~~i~iGiA~~~k 200 (420)
T KOG2096|consen 135 PTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD---GSGSH--HFVHIDNLE--------FE-RKHQVDIINIGIAGNAK 200 (420)
T ss_pred ceEEEECCCcceEEEEEccCCEEEEEEeeeccc---CCCCc--ccccccccc--------cc-hhcccceEEEeecCCce
Confidence 7889999998877766554 6899998765432 11111 111122100 00 12677788888889999
Q ss_pred EEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcC---Cc-----ceeeeccccc
Q 001352 817 YLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR---SS-----EVISKLEGHS 887 (1093)
Q Consensus 817 ~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~---~~-----~~~~~l~~h~ 887 (1093)
+|++++ |..|.+|++. |+.+..+......-+..+.|| +|++||+++..-.|++|.+- .| ..+-.|+||.
T Consensus 201 ~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~ 278 (420)
T KOG2096|consen 201 YIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQ 278 (420)
T ss_pred EEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccch
Confidence 999998 6789999998 999988887777788899999 99999999999999999974 22 2345688999
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceee--eeeeecCCCc-ccCCCCceEEEEccCCCEEEEEeCCeEEEEE
Q 001352 888 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT--CRSLQTPDGV-MTLAPSETHIQFHKDQTRFLLVHETHLAIYE 964 (1093)
Q Consensus 888 ~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~~~~-~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd 964 (1093)
..|..++||++...++|.|.||+++|||.+-..... ...++..... ...+.....++.||.|+.||++....+++|.
T Consensus 279 saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~ 358 (420)
T KOG2096|consen 279 SAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFA 358 (420)
T ss_pred hheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEE
Confidence 999999999999999999999999999987432111 1122222111 1111234589999999999999999999999
Q ss_pred cCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 001352 965 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1011 (1093)
Q Consensus 965 ~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~ 1011 (1093)
.++|+....+...|...|+++.|++||++++|++ |+.+++..-..|
T Consensus 359 se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ntpg 404 (420)
T KOG2096|consen 359 SEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIRNTPG 404 (420)
T ss_pred cccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeecCCCc
Confidence 9999988887888999999999999999999997 788998864333
No 93
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=9.4e-25 Score=245.60 Aligned_cols=237 Identities=10% Similarity=0.095 Sum_probs=185.0
Q ss_pred ecCCCCCeEEEEECCC-CCEEEEEEcCCEEEEEEccCCCc-c----cceEEeccccccEEEEEeeCCCCcEEEEEEcCCC
Q 001352 393 VRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSD-A----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 466 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~d-g~~las~~~d~~i~iwd~~~~~~-~----~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~ 466 (1093)
+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++.. . .....+.+|...|.+++|+|++.. ++++++.|+
T Consensus 70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~Dg 148 (568)
T PTZ00420 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDS 148 (568)
T ss_pred EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCC
Confidence 7899999999999997 79999999999999999986432 1 122357789999999999999874 568999999
Q ss_pred cEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEE-----EEEccC
Q 001352 467 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR-----MAYSAN 541 (1093)
Q Consensus 467 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~-----~~~s~d 541 (1093)
+|+|||+.+++.+..+. |...|.+++|++ +|.+|++++.|+.|++||++++.....+..|.+.+.. ..|+++
T Consensus 149 tIrIWDl~tg~~~~~i~-~~~~V~Slswsp--dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d 225 (568)
T PTZ00420 149 FVNIWDIENEKRAFQIN-MPKKLSSLKWNI--KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGD 225 (568)
T ss_pred eEEEEECCCCcEEEEEe-cCCcEEEEEECC--CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCC
Confidence 99999999999888776 667899999965 6789999999999999999999888888888765432 345689
Q ss_pred CCEEEEEecCCCCceeEEEEeCCC-CeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecC
Q 001352 542 GRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 620 (1093)
Q Consensus 542 ~~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 620 (1093)
+.++++++.++..++.|++||++. ++++..+..+. +.+.+......+++.++++|+.|++|++|++..+. +..+...
T Consensus 226 ~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~-~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~ 303 (568)
T PTZ00420 226 DNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN-ASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEY 303 (568)
T ss_pred CCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC-CccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeeccc
Confidence 999999887654456899999985 55555543322 12333344445568888899999999999998764 3334333
Q ss_pred CCCCCCceEEEecCC
Q 001352 621 GGLPENPRICFNKNG 635 (1093)
Q Consensus 621 ~~~~~v~~v~~s~~~ 635 (1093)
....++.+++|.|..
T Consensus 304 ~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 304 KSCSPFRSFGFLPKQ 318 (568)
T ss_pred ccCCCccceEEcccc
Confidence 344567889999854
No 94
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=7.1e-26 Score=248.50 Aligned_cols=277 Identities=14% Similarity=0.198 Sum_probs=212.1
Q ss_pred ccccceEEEEeecCCceEEEeeccceeEEeeecCccc------C------------------cCc-cccc---------c
Q 001352 733 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL------T------------------LST-EATT---------K 778 (1093)
Q Consensus 733 ~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~------~------------------~~~-~~~~---------~ 778 (1093)
.|.+.|.++.||+||++|++++.||.|+||.+..... . ... .... .
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 4899999999999999999999999999999876211 0 000 0000 0
Q ss_pred cCCcccCCCCCCceeecc-CCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCC
Q 001352 779 VPPRLYQPRHGPQFMVND-TTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDN 857 (1093)
Q Consensus 779 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~ 857 (1093)
....+.+..... +.... ....||...|..+.||.++-+|-+.-|.+|++|++...++++.|. |...|+|++|+|-|.
T Consensus 345 s~~~~~p~~~f~-f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDD 422 (712)
T KOG0283|consen 345 SPCVLLPLKAFV-FSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDD 422 (712)
T ss_pred CccccCCCcccc-ccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCC
Confidence 000001100000 00000 012369999999999988755544449999999999999999998 999999999999999
Q ss_pred CEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCC
Q 001352 858 NVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 937 (1093)
Q Consensus 858 ~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 937 (1093)
+|+++|+-||.|+||++...+++.-..-+ .-|++++|+|||+..+.|+.+|.+++|+....+......+....+.....
T Consensus 423 ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~ 501 (712)
T KOG0283|consen 423 RYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQG 501 (712)
T ss_pred CcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccC
Confidence 99999999999999999987776555544 77999999999999999999999999999987766655555554444434
Q ss_pred CCceEEEEccCCC--EEEEEeCCeEEEEEcCCcceeeeeecCC-CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 001352 938 PSETHIQFHKDQT--RFLLVHETHLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1012 (1093)
Q Consensus 938 ~~v~~~~~s~dg~--~l~~~~d~~i~vwd~~~~~~~~~~~~~h-~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~ 1012 (1093)
..|+.+.|.|... .|+++.|..|+|||..+...+..+...| ...-....|+.||++|+++++|..|++|+.+...
T Consensus 502 ~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 502 KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 5799999998654 7888999999999998888877755444 3334567899999999999999999999985543
No 95
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.2e-23 Score=231.54 Aligned_cols=571 Identities=12% Similarity=0.113 Sum_probs=350.6
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCc-EEEEEEcCCCcEEEE
Q 001352 393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQ-ISVITCGDDKTIKVW 471 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~-l~l~s~~~d~~i~vw 471 (1093)
+.|-...-..-.||+|+++++.+..+ .|.||...+|.++. .+.+|..+++.+.+.|.... .++.+++.||.|++|
T Consensus 12 lgg~n~~~~~avfSnD~k~l~~~~~~-~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vw 87 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKFLFLCTGN-FVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVW 87 (792)
T ss_pred eccccceecccccccCCcEEEEeeCC-EEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEe
Confidence 33333334446699999999887655 69999999999887 78899999999999887663 478899999999999
Q ss_pred ECCCCceeEEeecCCCCeEEeeeccc-CCccEEE-EEecCC------------eEEEEEcCCCCce-EEecCCCCceEEE
Q 001352 472 DAVTGSRTYSFEGHGAPVYSLCPHAK-ENIHFIF-SISVDG------------KIKAWLYDSLGAR-VDYDAPGLGCTRM 536 (1093)
Q Consensus 472 d~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~~l~-s~~~dg------------~i~vwd~~~~~~~-~~~~~~~~~v~~~ 536 (1093)
|...+..++++..+. ++..+.+.+. -+....+ ....|. .++-+.+.+.... ..+......-.++
T Consensus 88 d~~~~~Llkt~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I 166 (792)
T KOG1963|consen 88 DWSDGELLKTFDNNL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSI 166 (792)
T ss_pred cCCCcEEEEEEecCC-ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccE
Confidence 999999998886433 2332222110 0000111 111111 1111111111000 0000001113567
Q ss_pred EEccCCCEEEEEecCCCCceeEEEEeCCCCeee-eeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC--Cce
Q 001352 537 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIK-RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--VQL 613 (1093)
Q Consensus 537 ~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~-~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~--~~~ 613 (1093)
.+++.|.+.+.+. +..+.+|+...+... .....+..|...+.+.+++|++++++++..||.|.+|.--. +..
T Consensus 167 ~~~~~ge~~~i~~-----~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~ 241 (792)
T KOG1963|consen 167 VDNNSGEFKGIVH-----MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDS 241 (792)
T ss_pred EEcCCceEEEEEE-----eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccc
Confidence 8888888877765 445888888775511 11111222335689999999999999999999999996433 222
Q ss_pred EEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecC
Q 001352 614 LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE 693 (1093)
Q Consensus 614 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1093)
...-..|-+...|.+++|+++|.+|++|+..|.+.+|.+.++.. +-+.
T Consensus 242 ~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k-qfLP------------------------------- 289 (792)
T KOG1963|consen 242 ETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK-QFLP------------------------------- 289 (792)
T ss_pred ccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCc-cccc-------------------------------
Confidence 22122233345699999999999999999999999999987741 1111
Q ss_pred CCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCc
Q 001352 694 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST 773 (1093)
Q Consensus 694 ~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~ 773 (1093)
. -.+.|..+.+|||+...+....|+.+.+-..+.-...
T Consensus 290 -------------------------------------R--Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k--- 327 (792)
T KOG1963|consen 290 -------------------------------------R--LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIK--- 327 (792)
T ss_pred -------------------------------------c--cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhh---
Confidence 1 2356788888999998888888888887665322110
Q ss_pred ccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccC-CCEEEEEeCCeEEEEEccCceeEEEEC-----CCC---
Q 001352 774 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN-DAYLFSASGGVISLYIVMTFKTILTIM-----PPS--- 844 (1093)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d-g~~la~~~dg~i~iwd~~~~~~~~~~~-----~~~--- 844 (1093)
.++.-..+.+.. . ......-.+.++++|. +..+.-+-.|.|++||+.+.+.+..+. .+.
T Consensus 328 -----~tIsgi~~~~~~------~-k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~ 395 (792)
T KOG1963|consen 328 -----STISGIKPPTPS------T-KTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDV 395 (792)
T ss_pred -----hhccCccCCCcc------c-cccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcc
Confidence 011111111000 0 0013455677888994 444444447999999998877765543 122
Q ss_pred ---CCeEEEEEcCCCCCEEEEEe--------CCC--eEEEEEcCCcce----ee-ecccccCCeEEEEEeCC-C-CEEEE
Q 001352 845 ---PTATSLAFNPHDNNVIAIGM--------DDS--TILIYNARSSEV----IS-KLEGHSKRVTGLVFSDA-L-NILVS 904 (1093)
Q Consensus 845 ---~~i~~l~~s~~d~~~lasg~--------~dg--~i~iwd~~~~~~----~~-~l~~h~~~V~~l~~s~d-g-~~l~s 904 (1093)
-.+++++.+. .|.+++|+- .|| .+++|-...... .. ....|...+...+|.+. . .++++
T Consensus 396 n~~v~itav~~~~-~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vt 474 (792)
T KOG1963|consen 396 NIQVGITAVARSR-FGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVT 474 (792)
T ss_pred eeEEeeeeehhhc-cceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEE
Confidence 2578888888 699999863 333 677887764332 22 22458877777666542 2 37999
Q ss_pred EeCCCcEEEEeCCCCceee-----eeeeecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeeeecCCC
Q 001352 905 SGGDAQIFVWDVDGWGIQT-----CRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISS 979 (1093)
Q Consensus 905 ~s~dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~ 979 (1093)
++.||.++||-+.+.+... ..+.....-+. ..+++++||.||..|+++.+++|.+||..+...+........
T Consensus 475 a~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k---~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~~~~~~~ 551 (792)
T KOG1963|consen 475 ASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHK---TPITALCFSQDGSLLAVSFDDTITIWDYDTKNELLCTEGSRN 551 (792)
T ss_pred eccCCeEEEEEEecccccCcCccceEEeeeecccc---CcccchhhcCCCcEEEEecCCEEEEecCCChhhhhccccccc
Confidence 9999999999995432111 12222221122 368999999999999999999999999988433222222223
Q ss_pred CCEEEEEEcc----CCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCC------CCCCccceeEEEeCCCCCCEEE-
Q 001352 980 VPISQATFSC----DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPT------TSCLHVYPHAIAAHPLKPTQFA- 1048 (1093)
Q Consensus 980 ~~v~~~~fs~----dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~p~d~~~l~- 1048 (1093)
.++..+.|.. ++.. .....+.+.+|++-+..+...+......... .....+-+..+++-+..+..+.
T Consensus 552 ~~~~~~~~~~~~~~~~~~--~~~~~~~l~~WNll~~~l~w~~s~~~~i~~~~~~~~~~~~s~v~s~~f~vi~~~p~~~~~ 629 (792)
T KOG1963|consen 552 WPIAELLFTAQTQNDGAL--VHATQQRLSVWNLLSMSLIWNLSLSLRIEGVHVDRAADGDSSVGSTAFAVICWLPELLLV 629 (792)
T ss_pred cchHhHhhhcccccccce--eeccCceEehHhhhhhheecchhhhhhhhcchhhhhhccccccCccceEEEeecccchhh
Confidence 3444444433 4432 2335678999999998887643322222220 0011122222222221122333
Q ss_pred -------EEeCCCcEEEEecCCCC
Q 001352 1049 -------VGLTNGEVYVIEPNEPG 1065 (1093)
Q Consensus 1049 -------~~~~dg~v~~w~~~~~~ 1065 (1093)
+.+.|+.|.+|+...+.
T Consensus 630 ~k~~~~~f~~~~~ril~F~~~~pk 653 (792)
T KOG1963|consen 630 VKSIEQIFRGRDSRILIFSGDSPK 653 (792)
T ss_pred hhhhhhhcccccceEEEecCCCch
Confidence 67788888888875544
No 96
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=8.9e-27 Score=232.88 Aligned_cols=285 Identities=18% Similarity=0.248 Sum_probs=241.3
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352 393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 472 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 472 (1093)
+..|.+.|..+.|-++...|++|+.|..|++|++..++ .....++.|-.++|+++.|.++++ .+++++.|+.+++|+
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLWN 247 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeeee
Confidence 66799999999999999999999999999999998876 333446788889999999999999 788999999999999
Q ss_pred CCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001352 473 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 552 (1093)
Q Consensus 473 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~ 552 (1093)
+..++..+++.+|...|+++.|.... ..+++|+.|.+|+.||+....+..++. +...+..+..+ ...++++..
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~-- 320 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHF-- 320 (459)
T ss_pred ccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeeccc--
Confidence 99999999999999999999986543 349999999999999999866554433 23345555554 445666655
Q ss_pred CCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCC--CCCCceEE
Q 001352 553 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG--LPENPRIC 630 (1093)
Q Consensus 553 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~ 630 (1093)
+..|+.||.++..+......+ +.|.++..++++..+++.+.|.++.+.|+.+.+....+...+. ....+.+.
T Consensus 321 --DkkvRfwD~Rs~~~~~sv~~g----g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvv 394 (459)
T KOG0288|consen 321 --DKKVRFWDIRSADKTRSVPLG----GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVV 394 (459)
T ss_pred --ccceEEEeccCCceeeEeecC----cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeE
Confidence 566999999999998888774 4899999999999999999999999999999998888765432 23478899
Q ss_pred EecCCCEEEEEECCCeEEEEEcCCCceeeeccccccc--ceeeeecCCCceeeeeccCCceEecCCCCCCCccceeeccc
Q 001352 631 FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN--LRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 708 (1093)
Q Consensus 631 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 708 (1093)
|||++.|+++|+.||.|+||++.+++....+...... |+++.|+ |.|..+++++.+
T Consensus 395 fSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~----------------------~sG~~Llsadk~ 452 (459)
T KOG0288|consen 395 FSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWN----------------------PSGSGLLSADKQ 452 (459)
T ss_pred ECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEc----------------------CCCchhhcccCC
Confidence 9999999999999999999999999888877766555 8888887 568889999999
Q ss_pred ccceecc
Q 001352 709 NKSEVEK 715 (1093)
Q Consensus 709 ~~i~~w~ 715 (1093)
+.+.+|.
T Consensus 453 ~~v~lW~ 459 (459)
T KOG0288|consen 453 KAVTLWT 459 (459)
T ss_pred cceEecC
Confidence 9999984
No 97
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=8e-27 Score=229.06 Aligned_cols=294 Identities=11% Similarity=0.159 Sum_probs=236.0
Q ss_pred HHHHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEE
Q 001352 325 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 404 (1093)
Q Consensus 325 ~~~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 404 (1093)
++.+..|.||.+.|.|++=+|..-..+|+|+.||.|+|||+.+.+++.. +..|.+.|..++
T Consensus 56 kPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~-------------------f~AH~G~V~Gi~ 116 (433)
T KOG0268|consen 56 KPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT-------------------FKAHEGLVRGIC 116 (433)
T ss_pred ccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe-------------------eecccCceeeEE
Confidence 4556778999999999999999844699999999999999999888765 667999999999
Q ss_pred ECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeec
Q 001352 405 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 484 (1093)
Q Consensus 405 ~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~ 484 (1093)
+.. ..+++++.|.+|+.|.++.. .++ ++.+ ...+..+.-+..+. .++|+|.+ |.|||.....+++++.-
T Consensus 117 v~~--~~~~tvgdDKtvK~wk~~~~-p~~---tilg-~s~~~gIdh~~~~~--~FaTcGe~--i~IWD~~R~~Pv~smsw 185 (433)
T KOG0268|consen 117 VTQ--TSFFTVGDDKTVKQWKIDGP-PLH---TILG-KSVYLGIDHHRKNS--VFATCGEQ--IDIWDEQRDNPVSSMSW 185 (433)
T ss_pred ecc--cceEEecCCcceeeeeccCC-cce---eeec-cccccccccccccc--cccccCce--eeecccccCCccceeec
Confidence 987 77889999999999998873 222 3332 33466666666666 78898876 99999999999999988
Q ss_pred CCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001352 485 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 564 (1093)
Q Consensus 485 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 564 (1093)
....|.++.|+|... ..|++++.|+.|.+||++...++...... ..-+.++|+|.+-.++++.. |..++.+|++
T Consensus 186 G~Dti~svkfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~~-mRTN~IswnPeafnF~~a~E----D~nlY~~DmR 259 (433)
T KOG0268|consen 186 GADSISSVKFNPVET-SILASCASDRSIVLYDLRQASPLKKVILT-MRTNTICWNPEAFNFVAANE----DHNLYTYDMR 259 (433)
T ss_pred CCCceeEEecCCCcc-hheeeeccCCceEEEecccCCccceeeee-ccccceecCccccceeeccc----cccceehhhh
Confidence 888899999987654 57888889999999999988876644322 23467899996666666654 7789999987
Q ss_pred CC-eeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEEC
Q 001352 565 EG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 643 (1093)
Q Consensus 565 ~~-~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 643 (1093)
.- .++..+.+|. ..|..+.|+|.|+-+++||.|.+|+||..+.+......... ....|.++.||.|.+++++|++
T Consensus 260 ~l~~p~~v~~dhv---sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk-RMq~V~~Vk~S~Dskyi~SGSd 335 (433)
T KOG0268|consen 260 NLSRPLNVHKDHV---SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK-RMQHVFCVKYSMDSKYIISGSD 335 (433)
T ss_pred hhcccchhhcccc---eeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh-hhheeeEEEEeccccEEEecCC
Confidence 53 4455666665 89999999999999999999999999999876654333221 1245899999999999999999
Q ss_pred CCeEEEEEcCCCcee
Q 001352 644 ENRIKILETPESNSV 658 (1093)
Q Consensus 644 dg~i~iw~~~~~~~~ 658 (1093)
|+.|++|.....+.+
T Consensus 336 d~nvRlWka~Asekl 350 (433)
T KOG0268|consen 336 DGNVRLWKAKASEKL 350 (433)
T ss_pred Ccceeeeecchhhhc
Confidence 999999998755433
No 98
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=1.2e-25 Score=230.65 Aligned_cols=297 Identities=17% Similarity=0.231 Sum_probs=223.1
Q ss_pred ccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEc
Q 001352 733 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS 812 (1093)
Q Consensus 733 ~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 812 (1093)
+|...|.++++.|.|.++++|+-|..+++||++.-... .+- .... .......|.++.||
T Consensus 165 hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas----------~~~--------fr~l---~P~E~h~i~sl~ys 223 (641)
T KOG0772|consen 165 HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDAS----------MRS--------FRQL---QPCETHQINSLQYS 223 (641)
T ss_pred CCceEEEEeeecCCCceeeeccccceEEEEeccccccc----------chh--------hhcc---Ccccccccceeeec
Confidence 47888999999999999999999999999998753221 000 0000 11256678999999
Q ss_pred cCCCEEEEEe-CCeEEEEEccCceeEE------------EECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcc-
Q 001352 813 KNDAYLFSAS-GGVISLYIVMTFKTIL------------TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE- 878 (1093)
Q Consensus 813 ~dg~~la~~~-dg~i~iwd~~~~~~~~------------~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~- 878 (1093)
+.|..|++.+ ....+|+|-....... .-++|...++|.+|+|.....+.+++.||+++|||+...+
T Consensus 224 ~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~ 303 (641)
T KOG0772|consen 224 VTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS 303 (641)
T ss_pred CCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh
Confidence 9998888777 5779999976443332 2357888999999999878899999999999999998653
Q ss_pred eeeecc-----cccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEE
Q 001352 879 VISKLE-----GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 953 (1093)
Q Consensus 879 ~~~~l~-----~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 953 (1093)
.+..++ +-.-+++.++|++||+++|.|+.||.|.+|+..+..... .+.....|.. +..|++++||+||++|+
T Consensus 304 q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p--~~~vk~AH~~-g~~Itsi~FS~dg~~Ll 380 (641)
T KOG0772|consen 304 QLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRP--VMKVKDAHLP-GQDITSISFSYDGNYLL 380 (641)
T ss_pred heeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCccccc--ceEeeeccCC-CCceeEEEeccccchhh
Confidence 222222 344578999999999999999999999999985533222 2222233321 13699999999999999
Q ss_pred E-EeCCeEEEEEcCCcceeeeeecC--CCCCEEEEEEccCCCEEEEEeC------CCcEEEEEcCCCceEEEeccccccC
Q 001352 954 L-VHETHLAIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFV------DGTLSIHEASNLEVQCRILSTAYLR 1024 (1093)
Q Consensus 954 ~-~~d~~i~vwd~~~~~~~~~~~~~--h~~~v~~~~fs~dg~~l~t~~~------dg~v~vwd~~~~~~~~~~~~~~~~~ 1024 (1093)
+ |.|++++|||+...+.......+ ...+-+.++||||.++|+||+. .|.+.+||..+...+.++....
T Consensus 381 SRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~--- 457 (641)
T KOG0772|consen 381 SRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIST--- 457 (641)
T ss_pred hccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCC---
Confidence 9 99999999999876533222222 2456678999999999999874 4789999999999998887331
Q ss_pred CCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEE-EecCCC
Q 001352 1025 PTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYV-IEPNEP 1064 (1093)
Q Consensus 1025 ~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~-w~~~~~ 1064 (1093)
.....+.||| .-+.+.+|+.||++++ ||...+
T Consensus 458 -------aSvv~~~Whp-kLNQi~~gsgdG~~~vyYdp~~S 490 (641)
T KOG0772|consen 458 -------ASVVRCLWHP-KLNQIFAGSGDGTAHVYYDPNES 490 (641)
T ss_pred -------ceEEEEeecc-hhhheeeecCCCceEEEECcccc
Confidence 2334688999 4788999999999987 455443
No 99
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=1.4e-25 Score=238.74 Aligned_cols=283 Identities=18% Similarity=0.298 Sum_probs=240.0
Q ss_pred HHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEE-EEE
Q 001352 327 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR-VVW 405 (1093)
Q Consensus 327 ~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-v~~ 405 (1093)
+.+.|.||+..|..+++.++.. +++++.||++++|+-..++.+.... +.+|.+-|.+ ++|
T Consensus 6 ls~~l~gH~~DVr~v~~~~~~~--i~s~sRd~t~~vw~~~~~~~l~~~~-----------------~~~~~g~i~~~i~y 66 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAVTDGVC--IISGSRDGTVKVWAKKGKQYLETHA-----------------FEGPKGFIANSICY 66 (745)
T ss_pred eEEEeccCccchheeEecCCeE--EeecCCCCceeeeeccCccccccee-----------------cccCcceeecccee
Confidence 3457889999999999988873 8899999999999987766654322 5568888877 888
Q ss_pred CC-CCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeec
Q 001352 406 SP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 484 (1093)
Q Consensus 406 s~-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~ 484 (1093)
-+ ++-+|++|+.|.+|.+|...+...+. .+.+|...|++++...++. ++|||.|.++++|- .+++...+.+
T Consensus 67 ~e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~--~~~l~~~l~g 138 (745)
T KOG0301|consen 67 AESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR--IGELVYSLQG 138 (745)
T ss_pred ccccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec--chhhhcccCC
Confidence 75 56679999999999999999987666 7889999999999888775 89999999999994 5777788999
Q ss_pred CCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001352 485 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 564 (1093)
Q Consensus 485 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 564 (1093)
|+..|++++..+.. .+++|+.|.+|++|. .++...++.+|..-|+.+++-+++.+ ++|+. |+.|++|++
T Consensus 139 H~asVWAv~~l~e~---~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~~f-lScsN----Dg~Ir~w~~- 207 (745)
T KOG0301|consen 139 HTASVWAVASLPEN---TYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDSHF-LSCSN----DGSIRLWDL- 207 (745)
T ss_pred cchheeeeeecCCC---cEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCCCe-EeecC----CceEEEEec-
Confidence 99999999886543 899999999999994 46788899999999999999887654 55554 778999998
Q ss_pred CCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECC
Q 001352 565 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 644 (1093)
Q Consensus 565 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 644 (1093)
+|+.+..+.+|. .-++++....++..++++++|++++||+.. ++.+.+..... .|+++.+-++|. +++|+.|
T Consensus 208 ~ge~l~~~~ght---n~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt--siWsa~~L~NgD-Ivvg~SD 279 (745)
T KOG0301|consen 208 DGEVLLEMHGHT---NFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT--SIWSAKVLLNGD-IVVGGSD 279 (745)
T ss_pred cCceeeeeeccc---eEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc--ceEEEEEeeCCC-EEEeccC
Confidence 899999999998 889999988888999999999999999976 77777776543 488888888886 7788899
Q ss_pred CeEEEEEcCCC
Q 001352 645 NRIKILETPES 655 (1093)
Q Consensus 645 g~i~iw~~~~~ 655 (1093)
|.|+||.....
T Consensus 280 G~VrVfT~~k~ 290 (745)
T KOG0301|consen 280 GRVRVFTVDKD 290 (745)
T ss_pred ceEEEEEeccc
Confidence 99999998744
No 100
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=6e-26 Score=239.55 Aligned_cols=352 Identities=18% Similarity=0.213 Sum_probs=261.5
Q ss_pred CCCCce---eeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCC
Q 001352 334 GSSSPM---SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 410 (1093)
Q Consensus 334 h~~~V~---~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~ 410 (1093)
|...|. .+..++.+.+.|.+|+.||.|++|++..-....... -...+..|.+.|..++...+|+
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~-------------~~asme~HsDWVNDiiL~~~~~ 86 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTP-------------YIASMEHHSDWVNDIILCGNGK 86 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccc-------------hhhhhhhhHhHHhhHHhhcCCC
Confidence 444555 555564444459999999999999986543321100 0112667999999999999999
Q ss_pred EEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEe-eCCCCcEEEEEEcCCCcEEEEECCCC--ceeEE------
Q 001352 411 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF-SAPCKQISVITCGDDKTIKVWDAVTG--SRTYS------ 481 (1093)
Q Consensus 411 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~-s~d~~~l~l~s~~~d~~i~vwd~~~~--~~~~~------ 481 (1093)
.|+++|.|-+|++|+...+. .....++..|.+.|.|+++ .++.. ++|+||-|+.|.+||+.+| +.+.+
T Consensus 87 tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~ 163 (735)
T KOG0308|consen 87 TLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVTV 163 (735)
T ss_pred ceEEecCCceEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence 99999999999999999874 1223367889999999999 66666 8999999999999999988 33332
Q ss_pred --ee-cCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeE
Q 001352 482 --FE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 558 (1093)
Q Consensus 482 --~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i 558 (1093)
+. |+...|++++.. +.|..+++|+..+.+++||.++...+..+.+|...|..+..++||+.+++++. |++|
T Consensus 164 ~sl~sG~k~siYSLA~N--~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS----DgtI 237 (735)
T KOG0308|consen 164 NSLGSGPKDSIYSLAMN--QTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS----DGTI 237 (735)
T ss_pred ccCCCCCccceeeeecC--CcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC----CceE
Confidence 23 788899999874 45679999999999999999999999999999999999999999999999987 7889
Q ss_pred EEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEE
Q 001352 559 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL 638 (1093)
Q Consensus 559 ~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l 638 (1093)
++||+...+++.++..|. ..|.++..+|+-..+++|+.||.|+.=|+.+......+-... .+|..+..+...+-+
T Consensus 238 rlWdLgqQrCl~T~~vH~---e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~d--aPv~~l~~~~~~~~~ 312 (735)
T KOG0308|consen 238 RLWDLGQQRCLATYIVHK---EGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKED--APVLKLHLHEHDNSV 312 (735)
T ss_pred EeeeccccceeeeEEecc---CceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCC--CchhhhhhccccCCc
Confidence 999999999999999988 779999999999999999999999999998853333332221 346777777655556
Q ss_pred EEEECCCeEEEEEcCCCceeeecccccc-------cceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccc
Q 001352 639 AVIANENRIKILETPESNSVDAAGVLSD-------NLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS 711 (1093)
Q Consensus 639 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~-------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i 711 (1093)
-+++.|+.|+-|.......+........ .+.+....|....- .|.......+ ..|.+++++-...|.+
T Consensus 313 WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~-Gg~ai~k~~m----L~dkRhVlTkDa~gnv 387 (735)
T KOG0308|consen 313 WVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIP-GGAAIKKHAM----LNDKRHVLTKDAKGNV 387 (735)
T ss_pred eeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCceecc-Cchhhhhhhh----hcCcceEeeecCCCCE
Confidence 7888899999998764432221111111 11111111111100 0000001111 4678899999999999
Q ss_pred eeccee
Q 001352 712 EVEKPL 717 (1093)
Q Consensus 712 ~~w~~~ 717 (1093)
.+||+-
T Consensus 388 ~lwDIl 393 (735)
T KOG0308|consen 388 ALWDIL 393 (735)
T ss_pred EEEEee
Confidence 999965
No 101
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=1.2e-24 Score=244.63 Aligned_cols=270 Identities=17% Similarity=0.201 Sum_probs=210.5
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCc----------ccceEEeccccccEEEEEeeC-CCCcEEEEEEcC
Q 001352 396 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD----------ARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGD 464 (1093)
Q Consensus 396 h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~----------~~~~~~~~~h~~~v~~~~~s~-d~~~l~l~s~~~ 464 (1093)
|-..|.....++|+..+++++.+.....|+...+.. ......+.+|.+.|++++|+| +++ +|++|+.
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~--~LaSgS~ 96 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ--KLFTASE 96 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC--EEEEEeC
Confidence 445666777778877777777777777777654422 121224779999999999999 777 8999999
Q ss_pred CCcEEEEECCCC-------ceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEE
Q 001352 465 DKTIKVWDAVTG-------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 537 (1093)
Q Consensus 465 d~~i~vwd~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~ 537 (1093)
|++|++||+.++ ..+..+.+|...|.+++|+|.. +.+|++++.|++|++||+.++.....+..|...|.+++
T Consensus 97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~-~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA-MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE 175 (493)
T ss_pred CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC-CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence 999999999765 3567889999999999998753 35899999999999999999888888888999999999
Q ss_pred EccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEe----CCCcEEEEECCCCc-
Q 001352 538 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQ- 612 (1093)
Q Consensus 538 ~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~----~dg~i~iwd~~~~~- 612 (1093)
|+|+|.+|++++. ++.|++||+++++.+..+.+|. ......+.|.+++..+++++ .|+.|++||+++..
T Consensus 176 ~spdG~lLatgs~----Dg~IrIwD~rsg~~v~tl~~H~--~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~ 249 (493)
T PTZ00421 176 WNLDGSLLCTTSK----DKKLNIIDPRDGTIVSSVEAHA--SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS 249 (493)
T ss_pred EECCCCEEEEecC----CCEEEEEECCCCcEEEEEecCC--CCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC
Confidence 9999999999986 7779999999999988888876 23355678899888888754 47999999998754
Q ss_pred eEEEEecCCCCCCCceEEEecCCCEEEEEE-CCCeEEEEEcCCCceeeeccc-ccccceeeeecC
Q 001352 613 LLTTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGV-LSDNLRKLSVNP 675 (1093)
Q Consensus 613 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~-~~~~i~~~~~~~ 675 (1093)
.+.....+. ...+....|+++++++++++ .|+.|++|++.++..+..... ...++.++++.|
T Consensus 250 p~~~~~~d~-~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~p 313 (493)
T PTZ00421 250 PYSTVDLDQ-SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMP 313 (493)
T ss_pred ceeEeccCC-CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecc
Confidence 333333222 23355667899999999887 599999999998876654432 333455555554
No 102
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=4.5e-25 Score=211.96 Aligned_cols=275 Identities=16% Similarity=0.167 Sum_probs=217.6
Q ss_pred cCCCCCeEEEEECC-CCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352 394 RDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 472 (1093)
Q Consensus 394 ~~h~~~V~~v~~s~-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 472 (1093)
...++.|.+++||| ...+++++|.|++|++|+++....... .....|.++|.+++|+.||. .+++|+.|+.+++||
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLWD 100 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEEE
Confidence 34678999999999 556666889999999999987422222 24567999999999999998 799999999999999
Q ss_pred CCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001352 473 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 552 (1093)
Q Consensus 473 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~ 552 (1093)
+.+++ +..+..|.++|.++.|.+..+-..|++||.|++|++||.+...++..+..++ .+.++.. -..+++++..
T Consensus 101 L~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-RvYa~Dv--~~pm~vVata-- 174 (347)
T KOG0647|consen 101 LASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-RVYAADV--LYPMAVVATA-- 174 (347)
T ss_pred ccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-eeeehhc--cCceeEEEec--
Confidence 99995 5567789999999999877777799999999999999999988888777665 3333332 2334555554
Q ss_pred CCceeEEEEeCCCCeee-eeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC--ceEEEEecCCC-------
Q 001352 553 EGESFLVEWNESEGAIK-RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLTTIDAGGG------- 622 (1093)
Q Consensus 553 ~~~~~i~iwd~~~~~~~-~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~------- 622 (1093)
+..|.+|+++.+... +.....- +..+++++..++....+.|+-+|.+-|..+..+ +.-.++..|..
T Consensus 175 --~r~i~vynL~n~~te~k~~~SpL--k~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~ 250 (347)
T KOG0647|consen 175 --ERHIAVYNLENPPTEFKRIESPL--KWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDD 250 (347)
T ss_pred --CCcEEEEEcCCCcchhhhhcCcc--cceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCc
Confidence 555999999766432 2222222 356889999999888899999999999998876 33344444432
Q ss_pred CCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceee
Q 001352 623 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG 681 (1093)
Q Consensus 623 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 681 (1093)
...|++++|+|....|++++.||++.+||-.....+.....+..+|++..|+.++...+
T Consensus 251 VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifa 309 (347)
T KOG0647|consen 251 VYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFA 309 (347)
T ss_pred eEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEE
Confidence 34578899999999999999999999999998888888899999999999986665543
No 103
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=4e-24 Score=195.88 Aligned_cols=304 Identities=14% Similarity=0.153 Sum_probs=225.5
Q ss_pred cccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEcc
Q 001352 734 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 813 (1093)
Q Consensus 734 ~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 813 (1093)
....|.+++|.|.|...++++...++++-.++.-.....+......++.+. . -....|.+.|.|.+|||
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~---------~--kr~khhkgsiyc~~ws~ 99 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVL---------C--KRNKHHKGSIYCTAWSP 99 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEE---------e--eeccccCccEEEEEecC
Confidence 566899999999999999999999999877654321111111111111110 0 01124899999999999
Q ss_pred CCCEEEEEe-CCeEEEEEccCcee-----EEEECCCCCCeEEEEEcCC---CCCEEEEEe-CCCeEEEEEcCCcceeeec
Q 001352 814 NDAYLFSAS-GGVISLYIVMTFKT-----ILTIMPPSPTATSLAFNPH---DNNVIAIGM-DDSTILIYNARSSEVISKL 883 (1093)
Q Consensus 814 dg~~la~~~-dg~i~iwd~~~~~~-----~~~~~~~~~~i~~l~~s~~---d~~~lasg~-~dg~i~iwd~~~~~~~~~l 883 (1093)
+|+++|+|+ |.+|++..+....+ -..+.-|.+.|..++|-.+ ++.+|++++ .|..|++-|..+|+....+
T Consensus 100 ~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~ 179 (350)
T KOG0641|consen 100 CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHAL 179 (350)
T ss_pred ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceee
Confidence 999999999 58888876654332 2356679999999999642 467888765 4678999999999999999
Q ss_pred ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCc----ccCCCCceEEEEccCCCEEEEE-eCC
Q 001352 884 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGV----MTLAPSETHIQFHKDQTRFLLV-HET 958 (1093)
Q Consensus 884 ~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~s~dg~~l~~~-~d~ 958 (1093)
.||.+.|.++ ++-+|-++++|+.|.+|++||+.-.. ++...... -..+..|.+++..|.|++|+++ .|.
T Consensus 180 sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~-----~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~ds 253 (350)
T KOG0641|consen 180 SGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNS-----CVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADS 253 (350)
T ss_pred cCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccc-----eeeeccCcccCCCcccceeEEEEECCCcceeeeccCCC
Confidence 9999999886 34468899999999999999998644 22222211 1112469999999999999996 778
Q ss_pred eEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCccceeEEE
Q 001352 959 HLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIA 1038 (1093)
Q Consensus 959 ~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 1038 (1093)
...+||+..+..+..+. +|+..|.++.|||...||+|++.|..|++=|+... +...+.... ... |- -..+.+.
T Consensus 254 sc~lydirg~r~iq~f~-phsadir~vrfsp~a~yllt~syd~~ikltdlqgd-la~el~~~v-v~e--hk--dk~i~~r 326 (350)
T KOG0641|consen 254 SCMLYDIRGGRMIQRFH-PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD-LAHELPIMV-VAE--HK--DKAIQCR 326 (350)
T ss_pred ceEEEEeeCCceeeeeC-CCccceeEEEeCCCceEEEEecccceEEEeecccc-hhhcCceEE-EEe--cc--CceEEEE
Confidence 89999999999998844 69999999999999999999999999999999754 322222111 111 11 2345688
Q ss_pred eCCCCCCEEEEEeCCCcEEEEecC
Q 001352 1039 AHPLKPTQFAVGLTNGEVYVIEPN 1062 (1093)
Q Consensus 1039 ~~p~d~~~l~~~~~dg~v~~w~~~ 1062 (1093)
|+|+| --|++.+.|.++.+|-++
T Consensus 327 wh~~d-~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 327 WHPQD-FSFISSSADKTATLWALN 349 (350)
T ss_pred ecCcc-ceeeeccCcceEEEeccC
Confidence 99974 668899999999999764
No 104
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.2e-25 Score=216.18 Aligned_cols=298 Identities=14% Similarity=0.180 Sum_probs=243.8
Q ss_pred HHHHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEE
Q 001352 325 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 404 (1093)
Q Consensus 325 ~~~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 404 (1093)
..+++.|.||++.||.++...... ++.+++.|.+.+||.+++|.++.. +.||.+.|++++
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~-------------------Y~GH~GSVNsik 197 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLAT-------------------YTGHTGSVNSIK 197 (481)
T ss_pred EeehhhhcccccceeeehhhcCCc-ceeecccccceeEEeeccccceee-------------------ecccccceeeEE
Confidence 456788999999999999988776 799999999999999999999986 889999999999
Q ss_pred ECCCCCEEEEEEcCCEEEEEEc------cC--------CC----------------------cc-cceEEeccccccEEE
Q 001352 405 WSPDGSLLGVAYSKHIVQLYAY------HG--------GS----------------------DA-RQQLEIDAHVGNVND 447 (1093)
Q Consensus 405 ~s~dg~~las~~~d~~i~iwd~------~~--------~~----------------------~~-~~~~~~~~h~~~v~~ 447 (1093)
|++.+.++++++.|++.+||.. .. ++ .+ .++..+.+|.+.|.+
T Consensus 198 fh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a 277 (481)
T KOG0300|consen 198 FHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA 277 (481)
T ss_pred eccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence 9999999999999999999972 11 00 01 124467899999999
Q ss_pred EEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCC-ceEEe
Q 001352 448 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDY 526 (1093)
Q Consensus 448 ~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~ 526 (1093)
..|...|+ -+++++.|.+..+||+++|+.+..+.||....+.++-+|. .+++++.+.|.+.++||++..- .+..+
T Consensus 278 ~dWL~gg~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHpt--QrLVvTsSrDtTFRLWDFReaI~sV~VF 353 (481)
T KOG0300|consen 278 CDWLAGGQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPT--QRLVVTSSRDTTFRLWDFREAIQSVAVF 353 (481)
T ss_pred hhhhcCcc--eeeeeeccccceeeeeccCceeccccCcchhccccccCCc--ceEEEEeccCceeEeccchhhcceeeee
Confidence 99999999 6999999999999999999999999999999999888664 4789999999999999998543 34578
Q ss_pred cCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe-eeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 001352 527 DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI 605 (1093)
Q Consensus 527 ~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~i 605 (1093)
.+|...|+++.|..|.+ +++++. +..|.+||+++.. ++.++... .+++.++.+..+..|+.--.+..|++
T Consensus 354 QGHtdtVTS~vF~~dd~-vVSgSD----DrTvKvWdLrNMRsplATIRtd----S~~NRvavs~g~~iIAiPhDNRqvRl 424 (481)
T KOG0300|consen 354 QGHTDTVTSVVFNTDDR-VVSGSD----DRTVKVWDLRNMRSPLATIRTD----SPANRVAVSKGHPIIAIPHDNRQVRL 424 (481)
T ss_pred cccccceeEEEEecCCc-eeecCC----CceEEEeeeccccCcceeeecC----CccceeEeecCCceEEeccCCceEEE
Confidence 99999999999987765 556654 7789999998764 45555542 58889999987778888888999999
Q ss_pred EECCCCceEEEE--ecCCCCCCCceEEEecCC--CEEEEEECCCeEEEEEcCCC
Q 001352 606 WDMNKVQLLTTI--DAGGGLPENPRICFNKNG--TLLAVIANENRIKILETPES 655 (1093)
Q Consensus 606 wd~~~~~~~~~~--~~~~~~~~v~~v~~s~~~--~~l~~~~~dg~i~iw~~~~~ 655 (1093)
||++..++.... ...++..-|.|++|..+. .-|++++.|..+.-|.+...
T Consensus 425 fDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 425 FDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred EecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 999765543222 122333458889998643 35788889999999988754
No 105
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=4.4e-25 Score=224.23 Aligned_cols=250 Identities=21% Similarity=0.280 Sum_probs=214.0
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceE--------------Ee-ccccccEEEEEeeCCCCcE
Q 001352 393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL--------------EI-DAHVGNVNDLAFSAPCKQI 457 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~--------------~~-~~h~~~v~~~~~s~d~~~l 457 (1093)
+..|.-+|.+++++||+++..+++.+++|.=|++.+|+..+.+. .- ++|...|.+++.|+||+
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk-- 215 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK-- 215 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc--
Confidence 55799999999999999999999999999999999887431110 11 27888999999999999
Q ss_pred EEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEE
Q 001352 458 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 537 (1093)
Q Consensus 458 ~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~ 537 (1093)
+|++|+.|..|.||+..+.+.++.+.+|.+.|.+++|.... .-+++++.|+.|++|+++....+.++.+|...|..+.
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCc--cceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 89999999999999999999999999999999999996544 4799999999999999999988889999999999999
Q ss_pred EccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE
Q 001352 538 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 617 (1093)
Q Consensus 538 ~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 617 (1093)
...-++.+-+++. |.++++|++. -+....+.++. +.+-|++|-.+ ..+++|+.+|.|.+|++.+.+++.+.
T Consensus 294 aL~reR~vtVGgr----DrT~rlwKi~-eesqlifrg~~---~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~ 364 (479)
T KOG0299|consen 294 ALSRERCVTVGGR----DRTVRLWKIP-EESQLIFRGGE---GSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTS 364 (479)
T ss_pred hhcccceEEeccc----cceeEEEecc-ccceeeeeCCC---CCeeeEEEecc-cceeeccCCceEEEeeecccCceeEe
Confidence 8888888877766 7789999994 34445666666 78999999754 68999999999999999999988766
Q ss_pred ecCCC----------CCCCceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001352 618 DAGGG----------LPENPRICFNKNGTLLAVIANENRIKILETPES 655 (1093)
Q Consensus 618 ~~~~~----------~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 655 (1093)
....+ ...|++++..|...++++|+.+|.|++|.+.++
T Consensus 365 ~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 365 RLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred eccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 53221 126788999999999999999999999998866
No 106
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.2e-24 Score=210.16 Aligned_cols=241 Identities=19% Similarity=0.278 Sum_probs=204.6
Q ss_pred CCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCC--EEEEEeCCCeEEEEEcCC
Q 001352 800 SNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN--VIAIGMDDSTILIYNARS 876 (1093)
Q Consensus 800 ~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~--~lasg~~dg~i~iwd~~~ 876 (1093)
..|...++++|+ ++.++|+|+ |.+|+|||+.+.+.+..+..|.+.|+++.|.+ ... .|.+|+.||.|.+|+...
T Consensus 40 ~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~ 116 (362)
T KOG0294|consen 40 SAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGS 116 (362)
T ss_pred cccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcCC
Confidence 359999999998 789999998 79999999999999999999999999999998 554 899999999999999999
Q ss_pred cceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEe
Q 001352 877 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH 956 (1093)
Q Consensus 877 ~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~ 956 (1093)
.+++..+++|.+.|+.++.+|.|++.++.+.|+.++.||+-.|+......+.. ..+.+.|+|.|.+++++.
T Consensus 117 W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~---------~at~v~w~~~Gd~F~v~~ 187 (362)
T KOG0294|consen 117 WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN---------KATLVSWSPQGDHFVVSG 187 (362)
T ss_pred eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC---------cceeeEEcCCCCEEEEEe
Confidence 99999999999999999999999999999999999999999876433222221 234599999999999999
Q ss_pred CCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCccceeE
Q 001352 957 ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1036 (1093)
Q Consensus 957 d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1036 (1093)
.+.|-+|.+.+-.....+.. ..++.++.|. ++..|++|+.|+.|.+||.+.+...+.+. .|..+|..+.
T Consensus 188 ~~~i~i~q~d~A~v~~~i~~--~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~--------AH~~RVK~i~ 256 (362)
T KOG0294|consen 188 RNKIDIYQLDNASVFREIEN--PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFL--------AHENRVKDIA 256 (362)
T ss_pred ccEEEEEecccHhHhhhhhc--cccceeeeec-CCceEEEecCCceEEEeccCCCccceeee--------cchhheeeeE
Confidence 99999999988776665432 3567777775 56788999999999999999988887776 4566787765
Q ss_pred EEeCCCCCCEEEEEeCCCcEEEEecCCC
Q 001352 1037 IAAHPLKPTQFAVGLTNGEVYVIEPNEP 1064 (1093)
Q Consensus 1037 ~~~~p~d~~~l~~~~~dg~v~~w~~~~~ 1064 (1093)
.--.| ++.+|++++.||.|++||+.-.
T Consensus 257 ~~~~~-~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 257 SYTNP-EHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred EEecC-CceEEEEeccCceEEEEEcccc
Confidence 54555 5789999999999999999543
No 107
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=4.6e-25 Score=247.44 Aligned_cols=279 Identities=17% Similarity=0.241 Sum_probs=241.3
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCC
Q 001352 396 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 475 (1093)
Q Consensus 396 h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~ 475 (1093)
|...+.+..|. +.++++++.+++|++||..++..+.. .+.||.+.|++++|..-+. ++++|+.|.+++|||..+
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~--~lvsgS~D~t~rvWd~~s 280 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGD--KLVSGSTDKTERVWDCST 280 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCC--EEEEEecCCcEEeEecCC
Confidence 66778888888 67899999999999999999875552 3889999999999987455 799999999999999999
Q ss_pred CceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCc
Q 001352 476 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 555 (1093)
Q Consensus 476 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~ 555 (1093)
|++.+.+.+|...|.++.. ....+++|+.|.+|++|++.++.....+.+|..+|.++..+ +.++++++. +
T Consensus 281 g~C~~~l~gh~stv~~~~~----~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~----d 350 (537)
T KOG0274|consen 281 GECTHSLQGHTSSVRCLTI----DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSY----D 350 (537)
T ss_pred CcEEEEecCCCceEEEEEc----cCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEec----C
Confidence 9999999999999999976 33578889999999999999999999999999999999987 888999887 6
Q ss_pred eeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceEEEEecCCCCCCCceEEEecC
Q 001352 556 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGLPENPRICFNKN 634 (1093)
Q Consensus 556 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~~ 634 (1093)
+.|.+||+.++++++.+.+|. ..|.++.+.+. +.+++|+.|++|++||+.+. +++.++..+... +..+ ...
T Consensus 351 ~~v~VW~~~~~~cl~sl~gH~---~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~--v~~l--~~~ 422 (537)
T KOG0274|consen 351 GTVKVWDPRTGKCLKSLSGHT---GRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSL--VSSL--LLR 422 (537)
T ss_pred ceEEEEEhhhceeeeeecCCc---ceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccc--cccc--ccc
Confidence 689999999999999999988 99999988766 89999999999999999999 899888877543 4333 345
Q ss_pred CCEEEEEECCCeEEEEEcCCCceeeeccc-ccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeeccccccee
Q 001352 635 GTLLAVIANENRIKILETPESNSVDAAGV-LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 713 (1093)
Q Consensus 635 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~ 713 (1093)
+++|++++.|++|++||..++..++.+.+ +...+..++.. ...+++++.++++++
T Consensus 423 ~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~------------------------~~~il~s~~~~~~~l 478 (537)
T KOG0274|consen 423 DNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG------------------------KEEILCSSDDGSVKL 478 (537)
T ss_pred cceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC------------------------cceEEEEecCCeeEE
Confidence 78999999999999999999999999988 45666554442 356788999999999
Q ss_pred cceeeccCc
Q 001352 714 EKPLFARPS 722 (1093)
Q Consensus 714 w~~~~~~~~ 722 (1093)
||+......
T Consensus 479 ~dl~~~~~~ 487 (537)
T KOG0274|consen 479 WDLRSGTLI 487 (537)
T ss_pred EecccCchh
Confidence 998755443
No 108
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.4e-25 Score=236.75 Aligned_cols=242 Identities=21% Similarity=0.255 Sum_probs=207.6
Q ss_pred EEEEC-CCCCEEEEEEcCCEEEEEEccCCCcc---cceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCC-
Q 001352 402 RVVWS-PDGSLLGVAYSKHIVQLYAYHGGSDA---RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG- 476 (1093)
Q Consensus 402 ~v~~s-~dg~~las~~~d~~i~iwd~~~~~~~---~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~- 476 (1093)
++..+ |.++||.+|+.||.|++|++...... .....+..|.+.|++++...+++ .|++++.|-+|++|+...+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceEEEeecccCc
Confidence 34444 46778999999999999998754331 12346788999999999999998 7999999999999999888
Q ss_pred -ceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCc--eE--------Eec-CCCCceEEEEEccCCCE
Q 001352 477 -SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RV--------DYD-APGLGCTRMAYSANGRR 544 (1093)
Q Consensus 477 -~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~--------~~~-~~~~~v~~~~~s~d~~~ 544 (1093)
-++.++..|...|.++++. ..+...+++|+-|+.|.+||++++.. .. .+. ++...|.+++.++.|..
T Consensus 107 ~~c~stir~H~DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ 185 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI 185 (735)
T ss_pred chhHhhhhcccchheeeeec-ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE
Confidence 6788899999999999984 34557999999999999999997633 11 122 56678999999999988
Q ss_pred EEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCC
Q 001352 545 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 624 (1093)
Q Consensus 545 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 624 (1093)
+++|+. ++.+++||.++++.+..++||. ..|..+..++||.+++++|.||+|++||+...+++.++..|..
T Consensus 186 ivsGgt----ek~lr~wDprt~~kimkLrGHT---dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e-- 256 (735)
T KOG0308|consen 186 IVSGGT----EKDLRLWDPRTCKKIMKLRGHT---DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE-- 256 (735)
T ss_pred EEecCc----ccceEEeccccccceeeeeccc---cceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC--
Confidence 888876 5559999999999999999999 9999999999999999999999999999999999999887754
Q ss_pred CCceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001352 625 ENPRICFNKNGTLLAVIANENRIKILETPES 655 (1093)
Q Consensus 625 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 655 (1093)
.|.++..+|+-.++++|+.||.|..=|+.+.
T Consensus 257 ~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 257 GVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred ceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 4899999999999999999999999888764
No 109
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=1.7e-24 Score=217.71 Aligned_cols=281 Identities=17% Similarity=0.238 Sum_probs=242.0
Q ss_pred CCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCc
Q 001352 398 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 477 (1093)
Q Consensus 398 ~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~ 477 (1093)
-.|.++...|....+++|+.|.++.++|..+++.+. .++||...|+++.|+|+.. .+++++.|..|+||......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~---~~~Gh~kki~~v~~~~~~~--~v~~aSad~~i~vws~~~~s 294 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA---TLKGHTKKITSVKFHKDLD--TVITASADEIIRVWSVPLSS 294 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhh---hccCcceEEEEEEeccchh--heeecCCcceEEeecccccc
Confidence 468888888888899999999999999999987665 7889999999999999998 79999999999999998888
Q ss_pred eeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC--CCceEEEEEccCCCEEEEEecCCCCc
Q 001352 478 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--GLGCTRMAYSANGRRLFSCGTSKEGE 555 (1093)
Q Consensus 478 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~~v~~~~~s~d~~~l~~~~~~~~~~ 555 (1093)
.......|..+|+.+..++ .|.||++++.||+..+.|++++......... .-.+++.+|+|||..+.++.. +
T Consensus 295 ~~~~~~~h~~~V~~ls~h~--tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~----d 368 (506)
T KOG0289|consen 295 EPTSSRPHEEPVTGLSLHP--TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTP----D 368 (506)
T ss_pred Cccccccccccceeeeecc--CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCC----C
Confidence 8888889999999999866 5579999999999999999999887766553 346899999999999999876 7
Q ss_pred eeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCC
Q 001352 556 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 635 (1093)
Q Consensus 556 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 635 (1093)
+.|.+||+.++..+..|.+|. ++|..+.|+.+|-+++++.+|+.|++||++.-+...++...... ++.++.|.+.|
T Consensus 369 ~~vkiwdlks~~~~a~Fpght---~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~-~v~s~~fD~SG 444 (506)
T KOG0289|consen 369 GVVKIWDLKSQTNVAKFPGHT---GPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK-EVNSLSFDQSG 444 (506)
T ss_pred ceEEEEEcCCccccccCCCCC---CceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc-cceeEEEcCCC
Confidence 789999999999999999988 99999999999999999999999999999999988888877654 68999999999
Q ss_pred CEEEEEECCCeEEEEEcCCC--ceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeeccccccee
Q 001352 636 TLLAVIANENRIKILETPES--NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 713 (1093)
Q Consensus 636 ~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~ 713 (1093)
.+|+.++.+=.|++++-.+. ..+..+..|.+..+++.|. ...+++++++.|..+++
T Consensus 445 t~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg----------------------~~aq~l~s~smd~~l~~ 502 (506)
T KOG0289|consen 445 TYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFG----------------------EHAQYLASTSMDAILRL 502 (506)
T ss_pred CeEEeecceeEEEEEecccccceeeehhhhcccccceeeec----------------------ccceEEeeccchhheEE
Confidence 99999988766776664443 4555566666666666665 55677888888887776
Q ss_pred cc
Q 001352 714 EK 715 (1093)
Q Consensus 714 w~ 715 (1093)
+.
T Consensus 503 ~a 504 (506)
T KOG0289|consen 503 YA 504 (506)
T ss_pred ee
Confidence 54
No 110
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=5.3e-24 Score=214.27 Aligned_cols=284 Identities=16% Similarity=0.184 Sum_probs=243.8
Q ss_pred CCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEE
Q 001352 336 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 415 (1093)
Q Consensus 336 ~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~ 415 (1093)
..+.++...|... .+.+|+.|..+.++|..+++.+.. +.||.-.|+.+.|+|+...++++
T Consensus 220 pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~~-------------------~~Gh~kki~~v~~~~~~~~v~~a 279 (506)
T KOG0289|consen 220 PGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILAT-------------------LKGHTKKITSVKFHKDLDTVITA 279 (506)
T ss_pred CCeeEEeecCCCC-cceecCCCCceEEEecchhhhhhh-------------------ccCcceEEEEEEeccchhheeec
Confidence 4788888888744 589999999999999999988865 88999999999999999999999
Q ss_pred EcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeec--CCCCeEEee
Q 001352 416 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG--HGAPVYSLC 493 (1093)
Q Consensus 416 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~--h~~~v~~~~ 493 (1093)
+.|..|+||......... ....|..+|+.+...|.|. ||++++.|++..+.|+++|..+..... ..-.+++.+
T Consensus 280 Sad~~i~vws~~~~s~~~---~~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~ 354 (506)
T KOG0289|consen 280 SADEIIRVWSVPLSSEPT---SSRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA 354 (506)
T ss_pred CCcceEEeeccccccCcc---ccccccccceeeeeccCCc--EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence 999999999998765433 5678999999999999999 899999999999999999999877653 234478888
Q ss_pred ecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeee
Q 001352 494 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 573 (1093)
Q Consensus 494 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 573 (1093)
|+| ||.++.+|..||.|++||+.+......+.+|.++|..++|+.+|-+|+++.. ++.|.+||++.-+..+++.
T Consensus 355 fHp--DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad----d~~V~lwDLRKl~n~kt~~ 428 (506)
T KOG0289|consen 355 FHP--DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD----DGSVKLWDLRKLKNFKTIQ 428 (506)
T ss_pred EcC--CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec----CCeEEEEEehhhcccceee
Confidence 865 7789999999999999999999999999999999999999999999999986 5569999999888888887
Q ss_pred cccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEc
Q 001352 574 GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 652 (1093)
Q Consensus 574 ~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 652 (1093)
... ...+.++.|.+.|.++++++.|=.|++++-.+.........+.+.+..+.+.|....+++++++.|..++++.+
T Consensus 429 l~~--~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 429 LDE--KKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ccc--cccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 766 45799999999999999998887777777555444333333333345789999999999999999999888754
No 111
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.93 E-value=2.5e-23 Score=218.10 Aligned_cols=216 Identities=16% Similarity=0.181 Sum_probs=161.9
Q ss_pred eecCCCCCeEEEEECC-CCCEEEEEEcCCEEEEEEccCCCccc---ceEEeccccccEEEEEeeCCCCcEEEEEEcCCCc
Q 001352 392 LVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDAR---QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT 467 (1093)
Q Consensus 392 ~~~~h~~~V~~v~~s~-dg~~las~~~d~~i~iwd~~~~~~~~---~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~ 467 (1093)
++.+|.+.|+.+.||| +..+||+|+.|..|+||.+..|-... ....+.+..-.|-++.|+|.... +++ .+..|+
T Consensus 74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg-il~-s~a~g~ 151 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG-ILA-SGAHGS 151 (1012)
T ss_pred eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc-eEE-eccCce
Confidence 4889999999999999 67799999999999999998543211 11223344557899999998875 344 455889
Q ss_pred EEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCC-ceEEEEEccCCCEE
Q 001352 468 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGL-GCTRMAYSANGRRL 545 (1093)
Q Consensus 468 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~-~v~~~~~s~d~~~l 545 (1093)
++|||+.+++.+..+.+|...|.++.| +.||.+|+++++|..|+|||.+.... +.....|++ .-..+.|..+-.+|
T Consensus 152 v~i~D~stqk~~~el~~h~d~vQSa~W--seDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rl 229 (1012)
T KOG1445|consen 152 VYITDISTQKTAVELSGHTDKVQSADW--SEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERL 229 (1012)
T ss_pred EEEEEcccCceeecccCCchhhhcccc--ccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhh
Confidence 999999999999999999999999998 67889999999999999999986543 444555554 33456777776678
Q ss_pred EEEecCCCCceeEEEEeCCCC-eeeeeeecccccCCCeEEEEEcCCCCEEEE-EeCCCcEEEEECCCCce
Q 001352 546 FSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQL 613 (1093)
Q Consensus 546 ~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~-~~~dg~i~iwd~~~~~~ 613 (1093)
++.+.+......|++||.+.. ..++++.-.. ...+.--.|.||.+.++. |-.+.++..+.+...+.
T Consensus 230 isTGF~~~R~reV~~~Dtr~f~~p~~tleld~--stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qP 297 (1012)
T KOG1445|consen 230 ISTGFTTKRIREVRAYDTRKFGAPVHTLELDS--STGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQP 297 (1012)
T ss_pred hhcccchhhheeeeeeeccccCCcceeEEeec--ccceEeeeecCCCceEEEecCCcceEEEEEecCCCc
Confidence 777766555677999998753 3444444332 234555678899887765 44678888888776543
No 112
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.4e-24 Score=207.29 Aligned_cols=341 Identities=15% Similarity=0.250 Sum_probs=241.7
Q ss_pred EEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeE
Q 001352 411 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 490 (1093)
Q Consensus 411 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~ 490 (1093)
.+++...+++++. +....+.||.+.|+.++...... ++.+++.|.+.+||.+++|+|+.++.||.+.|+
T Consensus 126 rivssFk~~t~~~---------~lvre~~GHkDGiW~Vaa~~tqp--i~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVN 194 (481)
T KOG0300|consen 126 RIVSSFKDGTVKF---------RLVRELEGHKDGIWHVAADSTQP--ICGTASADHTARIWSLESGACLATYTGHTGSVN 194 (481)
T ss_pred hheeeecCCceeE---------eehhhhcccccceeeehhhcCCc--ceeecccccceeEEeeccccceeeeccccccee
Confidence 4556666666432 12225789999999999877665 899999999999999999999999999999999
Q ss_pred EeeecccCCccEEEEEecCCeEEEEEcCCCCceEEe---cCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001352 491 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY---DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 567 (1093)
Q Consensus 491 ~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~ 567 (1093)
++.|+++ +.++++++.|++-+||...-.-....- ..+.+. ..+..+........++...+ ...| ..
T Consensus 195 sikfh~s--~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsE-eE~e~sDe~~~d~d~~~~sD-~~ti-------Rv 263 (481)
T KOG0300|consen 195 SIKFHNS--GLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSE-EEEEHSDEHNRDTDSSEKSD-GHTI-------RV 263 (481)
T ss_pred eEEeccc--cceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCch-hhhhcccccccccccccccC-Ccee-------ee
Confidence 9999764 469999999999999963211000000 000000 00001100001111110000 1112 23
Q ss_pred eeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeE
Q 001352 568 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI 647 (1093)
Q Consensus 568 ~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i 647 (1093)
++..+.+|. ..|.++.|-..|+++++++.|.+..+||+++|+.+..+.+|.+ ..+.++-+|..+++++.+.|.++
T Consensus 264 Pl~~ltgH~---~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~--ELtHcstHptQrLVvTsSrDtTF 338 (481)
T KOG0300|consen 264 PLMRLTGHR---AVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDS--ELTHCSTHPTQRLVVTSSRDTTF 338 (481)
T ss_pred eeeeeeccc---cceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcch--hccccccCCcceEEEEeccCcee
Confidence 456778877 8999999999999999999999999999999999999987754 57888899999999999999999
Q ss_pred EEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCcccccc
Q 001352 648 KILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL 727 (1093)
Q Consensus 648 ~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~ 727 (1093)
++||....
T Consensus 339 RLWDFRea------------------------------------------------------------------------ 346 (481)
T KOG0300|consen 339 RLWDFREA------------------------------------------------------------------------ 346 (481)
T ss_pred Eeccchhh------------------------------------------------------------------------
Confidence 99987632
Q ss_pred ccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCee
Q 001352 728 LLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP 807 (1093)
Q Consensus 728 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 807 (1093)
|.+++. + .+|...|+
T Consensus 347 ----------I~sV~V-----------------------------------------------------F--QGHtdtVT 361 (481)
T KOG0300|consen 347 ----------IQSVAV-----------------------------------------------------F--QGHTDTVT 361 (481)
T ss_pred ----------cceeee-----------------------------------------------------e--ccccccee
Confidence 111100 0 03666667
Q ss_pred EEEEccCCCEEEEEeCCeEEEEEccCce-eEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeec---
Q 001352 808 CFALSKNDAYLFSASGGVISLYIVMTFK-TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL--- 883 (1093)
Q Consensus 808 ~l~~s~dg~~la~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l--- 883 (1093)
++.|..|.+.+....|.+|++||+.+-+ .+.++. ...++..++.+. ++.++|.--.+..|++||+...+ +.++
T Consensus 362 S~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~-g~~iIAiPhDNRqvRlfDlnG~R-laRlPrt 438 (481)
T KOG0300|consen 362 SVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSK-GHPIIAIPHDNRQVRLFDLNGNR-LARLPRT 438 (481)
T ss_pred EEEEecCCceeecCCCceEEEeeeccccCcceeee-cCCccceeEeec-CCceEEeccCCceEEEEecCCCc-cccCCcc
Confidence 7777666554333335778888876543 344444 456788999998 88899999989999999998543 3333
Q ss_pred --ccccCCeEEEEEeCCC--CEEEEEeCCCcEEEEeCCC
Q 001352 884 --EGHSKRVTGLVFSDAL--NILVSSGGDAQIFVWDVDG 918 (1093)
Q Consensus 884 --~~h~~~V~~l~~s~dg--~~l~s~s~dg~i~iwd~~~ 918 (1093)
++|..-|+|++|+.+. .-|+++|.|+.+.-|++..
T Consensus 439 sRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 439 SRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred cccccceeeeeeeccccCcccccccccccceeeeeEecc
Confidence 4799999999998654 4588999999999999876
No 113
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=8.2e-25 Score=204.79 Aligned_cols=244 Identities=15% Similarity=0.267 Sum_probs=202.5
Q ss_pred CCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC-CCCEEE
Q 001352 335 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLLG 413 (1093)
Q Consensus 335 ~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~-dg~~la 413 (1093)
.+.+..++||+.....+++++.||+++|||+..... ++ ..++.|...|.++.|++ +++.++
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~----Pi--------------~~~kEH~~EV~Svdwn~~~r~~~l 121 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK----PI--------------HKFKEHKREVYSVDWNTVRRRIFL 121 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCc----ch--------------hHHHhhhhheEEeccccccceeEE
Confidence 568999999998877899999999999999532211 11 12778999999999999 566778
Q ss_pred EEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEee
Q 001352 414 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC 493 (1093)
Q Consensus 414 s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~ 493 (1093)
++|-|++|++|+...+..++ ++.||...|...+|+|.... ++++++.|+++++||++.......+..|...+.++.
T Consensus 122 tsSWD~TiKLW~~~r~~Sv~---Tf~gh~~~Iy~a~~sp~~~n-lfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cd 197 (311)
T KOG0277|consen 122 TSSWDGTIKLWDPNRPNSVQ---TFNGHNSCIYQAAFSPHIPN-LFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCD 197 (311)
T ss_pred eeccCCceEeecCCCCcceE---eecCCccEEEEEecCCCCCC-eEEEccCCceEEEEEecCCCceeEEEeccceeEeec
Confidence 88999999999999887666 78999999999999998766 799999999999999987655555999999999999
Q ss_pred ecccCCccEEEEEecCCeEEEEEcCCCC-ceEEecCCCCceEEEEEccCCC-EEEEEecCCCCceeEEEEeCCCC-eeee
Q 001352 494 PHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGR-RLFSCGTSKEGESFLVEWNESEG-AIKR 570 (1093)
Q Consensus 494 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~s~d~~-~l~~~~~~~~~~~~i~iwd~~~~-~~~~ 570 (1093)
|+.. +...+++|+.|+.|+.||+++.+ .+.++.+|+-.|+.+.|||... .|++++. |-++++||...+ ..+.
T Consensus 198 w~ky-~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasY----DmT~riw~~~~~ds~~e 272 (311)
T KOG0277|consen 198 WSKY-NHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASY----DMTVRIWDPERQDSAIE 272 (311)
T ss_pred cccc-CCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccc----cceEEecccccchhhhh
Confidence 9855 45799999999999999999865 4557888999999999999754 5667765 778999999854 4555
Q ss_pred eeecccccCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEC
Q 001352 571 TYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDM 608 (1093)
Q Consensus 571 ~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~dg~i~iwd~ 608 (1093)
++..|. .-+..+.|++- +.++++++-|+.++||+.
T Consensus 273 ~~~~Ht---EFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 273 TVDHHT---EFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhhccc---eEEeccccccccCceeeecccccceeeecc
Confidence 666555 77888888875 568888999999999984
No 114
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=2.9e-25 Score=218.19 Aligned_cols=284 Identities=14% Similarity=0.224 Sum_probs=233.7
Q ss_pred EeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEE
Q 001352 437 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 516 (1093)
Q Consensus 437 ~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd 516 (1093)
.+.||.+.|.|++=+|..-. .++||+.||.|+|||+.+..++.+++.|.+.|..+++.. ..+++++.|.+|+.|.
T Consensus 61 ~L~gHrdGV~~lakhp~~ls-~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~----~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLS-TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ----TSFFTVGDDKTVKQWK 135 (433)
T ss_pred hccccccccchhhcCcchhh-hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc----cceEEecCCcceeeee
Confidence 46789999999999998622 699999999999999999999999999999999999854 5799999999999998
Q ss_pred cCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEE-
Q 001352 517 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQIL- 595 (1093)
Q Consensus 517 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~- 595 (1093)
++.. ...++. ....+..+.-+..+..+++||. .|.|||.....++..+.-.. ..|.++.|+|....++
T Consensus 136 ~~~~-p~~til-g~s~~~gIdh~~~~~~FaTcGe------~i~IWD~~R~~Pv~smswG~---Dti~svkfNpvETsILa 204 (433)
T KOG0268|consen 136 IDGP-PLHTIL-GKSVYLGIDHHRKNSVFATCGE------QIDIWDEQRDNPVSSMSWGA---DSISSVKFNPVETSILA 204 (433)
T ss_pred ccCC-cceeee-ccccccccccccccccccccCc------eeeecccccCCccceeecCC---CceeEEecCCCcchhee
Confidence 7763 333332 2334556666667778888864 39999999888888887655 7899999999876555
Q ss_pred EEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCC-ceeeecccccccceeeeec
Q 001352 596 AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVN 674 (1093)
Q Consensus 596 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~i~~~~~~ 674 (1093)
+++.|+.|.+||++.+.++..+...- ..+.++|+|++-.++++..|..++.+|+... .++....+|...+..+.|+
T Consensus 205 s~~sDrsIvLyD~R~~~Pl~KVi~~m---RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfs 281 (433)
T KOG0268|consen 205 SCASDRSIVLYDLRQASPLKKVILTM---RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFS 281 (433)
T ss_pred eeccCCceEEEecccCCccceeeeec---cccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccC
Confidence 46699999999999999988876543 3578999999889999999999999999865 6677888888888877776
Q ss_pred CCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEee
Q 001352 675 PISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALA 754 (1093)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~ 754 (1093)
|.|+-+++|+.|.+|++|....+......... ....|.++.||-|.+++++|+
T Consensus 282 ----------------------ptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk-----RMq~V~~Vk~S~Dskyi~SGS 334 (433)
T KOG0268|consen 282 ----------------------PTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK-----RMQHVFCVKYSMDSKYIISGS 334 (433)
T ss_pred ----------------------CCcchhccccccceEEEeecCCCcchhhhhHh-----hhheeeEEEEeccccEEEecC
Confidence 77888999999999999998755444333222 345799999999999999999
Q ss_pred ccceeEEeeecC
Q 001352 755 SNGVHLMWRWPR 766 (1093)
Q Consensus 755 ~dg~v~vw~~~~ 766 (1093)
.|+.|++|.-..
T Consensus 335 dd~nvRlWka~A 346 (433)
T KOG0268|consen 335 DDGNVRLWKAKA 346 (433)
T ss_pred CCcceeeeecch
Confidence 999999998653
No 115
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1.3e-23 Score=203.11 Aligned_cols=270 Identities=20% Similarity=0.278 Sum_probs=214.9
Q ss_pred CCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEE
Q 001352 335 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 414 (1093)
Q Consensus 335 ~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las 414 (1093)
.+.|+.+.|+|.+.. |++++.||++++||+........ -.|+.++.+++|.+ ...+++
T Consensus 13 ~d~IS~v~f~~~~~~-LLvssWDgslrlYdv~~~~l~~~--------------------~~~~~plL~c~F~d-~~~~~~ 70 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSD-LLVSSWDGSLRLYDVPANSLKLK--------------------FKHGAPLLDCAFAD-ESTIVT 70 (323)
T ss_pred hhceeeEEEcCcCCc-EEEEeccCcEEEEeccchhhhhh--------------------eecCCceeeeeccC-CceEEE
Confidence 458999999999986 55557999999999988755432 23899999999997 567889
Q ss_pred EEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeee
Q 001352 415 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 494 (1093)
Q Consensus 415 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~ 494 (1093)
|+.||.|+.+|++++... .+..|..+|.|+.+++-.. .+++||.|++|++||.........+. ....|.++..
T Consensus 71 G~~dg~vr~~Dln~~~~~----~igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v 143 (323)
T KOG1036|consen 71 GGLDGQVRRYDLNTGNED----QIGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDV 143 (323)
T ss_pred eccCceEEEEEecCCcce----eeccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEec
Confidence 999999999999998644 4668999999999998776 79999999999999988766665554 3347888865
Q ss_pred cccCCccEEEEEecCCeEEEEEcCCCCceEEecCC--CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC----ee
Q 001352 495 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG----AI 568 (1093)
Q Consensus 495 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~----~~ 568 (1093)
.+..|+.|+.|..|.+||+++.......... .-.++++++-|++.-.++++. +|.|.+=.++.. ..
T Consensus 144 ----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSi----eGRVavE~~d~s~~~~sk 215 (323)
T KOG1036|consen 144 ----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSI----EGRVAVEYFDDSEEAQSK 215 (323)
T ss_pred ----cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEee----cceEEEEccCCchHHhhh
Confidence 4568999999999999999987766533222 236899999998887777776 444554443333 33
Q ss_pred eeeeeccccc------CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEE
Q 001352 569 KRTYQGLQLQ------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 642 (1093)
Q Consensus 569 ~~~~~~~~~~------~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 642 (1093)
...|+.|... ..+|++++|+|-.+.+++|+.||.|.+||+.+.+.+..+... ...|.+++|+.+|..||+++
T Consensus 216 kyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~--~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 216 KYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY--ETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred ceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC--CCceEEEEeccCCCeEEEEe
Confidence 4456665522 246899999999999999999999999999999988888654 23589999999999999987
Q ss_pred C
Q 001352 643 N 643 (1093)
Q Consensus 643 ~ 643 (1093)
.
T Consensus 294 s 294 (323)
T KOG1036|consen 294 S 294 (323)
T ss_pred c
Confidence 6
No 116
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.3e-24 Score=230.10 Aligned_cols=274 Identities=20% Similarity=0.249 Sum_probs=236.9
Q ss_pred EEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEE
Q 001352 402 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 481 (1093)
Q Consensus 402 ~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~ 481 (1093)
-+.|| ....||+|... .|++|+..+++... + ...+...|+++.|+++|. +|+.|..+|.|.|||..+.+.+..
T Consensus 182 lldWs-s~n~laValg~-~vylW~~~s~~v~~-l--~~~~~~~vtSv~ws~~G~--~LavG~~~g~v~iwD~~~~k~~~~ 254 (484)
T KOG0305|consen 182 LLDWS-SANVLAVALGQ-SVYLWSASSGSVTE-L--CSFGEELVTSVKWSPDGS--HLAVGTSDGTVQIWDVKEQKKTRT 254 (484)
T ss_pred Hhhcc-cCCeEEEEecc-eEEEEecCCCceEE-e--EecCCCceEEEEECCCCC--EEEEeecCCeEEEEehhhcccccc
Confidence 46788 45577777544 59999999987333 2 223488999999999999 899999999999999999999999
Q ss_pred eec-CCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEE-ecCCCCceEEEEEccCCCEEEEEecCCCCceeEE
Q 001352 482 FEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 559 (1093)
Q Consensus 482 ~~~-h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~ 559 (1093)
+.+ |...|-+++|. +..+.+|+.||.|..+|++....... +.+|...|-.+.|++|++++++++. |+.+.
T Consensus 255 ~~~~h~~rvg~laW~----~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgn----DN~~~ 326 (484)
T KOG0305|consen 255 LRGSHASRVGSLAWN----SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGN----DNVVF 326 (484)
T ss_pred ccCCcCceeEEEecc----CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCC----ccceE
Confidence 998 99999999994 46899999999999999998877665 7889999999999999999999987 77799
Q ss_pred EEeCCCCeeeeeeecccccCCCeEEEEEcCCC-CEEEE--EeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCC
Q 001352 560 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQILA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT 636 (1093)
Q Consensus 560 iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 636 (1093)
|||.....++..+..|. ..|.+++|+|-. ..|++ |+.|+.|++||..+++.+..+... ..|.++.|++..+
T Consensus 327 Iwd~~~~~p~~~~~~H~---aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg---sQVcsL~Wsk~~k 400 (484)
T KOG0305|consen 327 IWDGLSPEPKFTFTEHT---AAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG---SQVCSLIWSKKYK 400 (484)
T ss_pred eccCCCccccEEEeccc---eeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccC---CceeeEEEcCCCC
Confidence 99998889999999988 999999999974 45666 458999999999999999888755 3489999999887
Q ss_pred EEEEE--ECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceec
Q 001352 637 LLAVI--ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVE 714 (1093)
Q Consensus 637 ~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w 714 (1093)
-|+++ ..++.|.||+..+...+..+.+|...|..++++ |||..+++++.|.++++|
T Consensus 401 Ei~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~S----------------------Pdg~~i~t~a~DETlrfw 458 (484)
T KOG0305|consen 401 ELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALS----------------------PDGETIVTGAADETLRFW 458 (484)
T ss_pred EEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEEC----------------------CCCCEEEEecccCcEEec
Confidence 66664 457899999999999999999999999988886 789999999999999999
Q ss_pred ceee
Q 001352 715 KPLF 718 (1093)
Q Consensus 715 ~~~~ 718 (1093)
++-.
T Consensus 459 ~~f~ 462 (484)
T KOG0305|consen 459 NLFD 462 (484)
T ss_pred cccC
Confidence 9653
No 117
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=9.4e-21 Score=208.97 Aligned_cols=278 Identities=17% Similarity=0.220 Sum_probs=225.9
Q ss_pred cCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCc-eeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCE
Q 001352 333 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ-KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 411 (1093)
Q Consensus 333 ~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~ 411 (1093)
.|+..-+.++|.|+|. +|.+++.||.|++|+..+-. .... +.-++..|.+++.. +.+
T Consensus 11 aht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~t-------------------i~~~g~~v~~ia~~--s~~ 68 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPET-------------------IDISGELVSSIACY--SNH 68 (933)
T ss_pred hccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCch-------------------hhccCceeEEEeec--ccc
Confidence 5888999999999999 68999999999999987652 1111 22267778777764 559
Q ss_pred EEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEE
Q 001352 412 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 491 (1093)
Q Consensus 412 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~ 491 (1093)
|++|+.+++|.+|...+++.-. .+...+-++++++|+.+|+ +++.||.|-.|++-++.++.....+++|.++|.+
T Consensus 69 f~~~s~~~tv~~y~fps~~~~~---iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~ 143 (933)
T KOG1274|consen 69 FLTGSEQNTVLRYKFPSGEEDT---ILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQ 143 (933)
T ss_pred eEEeeccceEEEeeCCCCCccc---eeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCceee
Confidence 9999999999999999886443 3445677899999999999 8999999999999999999999999999999999
Q ss_pred eeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC--------CCceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001352 492 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 563 (1093)
Q Consensus 492 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--------~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 563 (1093)
+.++| ++.+||+.+-||.|++|+++++.....+..- ...+..++|+|+|..+++... ++.|.+|+.
T Consensus 144 l~~~p--~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~----d~~Vkvy~r 217 (933)
T KOG1274|consen 144 LSYDP--KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV----DNTVKVYSR 217 (933)
T ss_pred eeEcC--CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc----CCeEEEEcc
Confidence 99965 5679999999999999999988766654332 235678999999776666655 677999999
Q ss_pred CCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEEC
Q 001352 564 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 643 (1093)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 643 (1093)
.++.....+.....+ ..+..+.|+|+|.||++++.+|.|.|||.++... |.....|.+++|.|+.+.+-....
T Consensus 218 ~~we~~f~Lr~~~~s-s~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~it~~~~ 290 (933)
T KOG1274|consen 218 KGWELQFKLRDKLSS-SKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAWKPNANAITLITA 290 (933)
T ss_pred CCceeheeecccccc-cceEEEEEcCCCcEEeeeccCCcEEEEecccchh------ccccceeEEEecCCCCCeeEEEee
Confidence 999998888765522 3489999999999999999999999999998222 333456899999999887766666
Q ss_pred CCeEEEE
Q 001352 644 ENRIKIL 650 (1093)
Q Consensus 644 dg~i~iw 650 (1093)
.|...+|
T Consensus 291 ~g~~~~~ 297 (933)
T KOG1274|consen 291 LGTLGVS 297 (933)
T ss_pred ccccccC
Confidence 5555554
No 118
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.3e-23 Score=202.77 Aligned_cols=298 Identities=13% Similarity=0.172 Sum_probs=218.5
Q ss_pred HHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEEC
Q 001352 327 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 406 (1093)
Q Consensus 327 ~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 406 (1093)
.+.+|.||.++|++++||.||++ ||+++.|++|+||++..-.....+.++ ..-.-+..+.++|+
T Consensus 78 ~~~~LKgH~~~vt~~~FsSdGK~-lat~~~Dr~Ir~w~~~DF~~~eHr~~R---------------~nve~dhpT~V~Fa 141 (420)
T KOG2096|consen 78 NVSVLKGHKKEVTDVAFSSDGKK-LATISGDRSIRLWDVRDFENKEHRCIR---------------QNVEYDHPTRVVFA 141 (420)
T ss_pred hhhhhhccCCceeeeEEcCCCce-eEEEeCCceEEEEecchhhhhhhhHhh---------------ccccCCCceEEEEC
Confidence 45689999999999999999997 899999999999999874433211111 11122357889999
Q ss_pred CCCCEEEEEE-cCCEEEEEEccCCCc---ccceE------EeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCC
Q 001352 407 PDGSLLGVAY-SKHIVQLYAYHGGSD---ARQQL------EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 476 (1093)
Q Consensus 407 ~dg~~las~~-~d~~i~iwd~~~~~~---~~~~~------~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~ 476 (1093)
||-+-+++.. ...++++|.+...+. ..... --+.|.-.|..+-....++ ++++++.|..|.+|++. |
T Consensus 142 pDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k--~imsas~dt~i~lw~lk-G 218 (420)
T KOG2096|consen 142 PDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAK--YIMSASLDTKICLWDLK-G 218 (420)
T ss_pred CCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCce--EEEEecCCCcEEEEecC-C
Confidence 9987766654 445799998754321 11100 1124666788888887888 89999999999999988 9
Q ss_pred ceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcC--------CCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001352 477 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD--------SLGARVDYDAPGLGCTRMAYSANGRRLFSC 548 (1093)
Q Consensus 477 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~--------~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 548 (1093)
+.+..+......-+..+. +++|+++++++..-.|++|.+- .-...+.+.+|...|..++|+++.+++++.
T Consensus 219 q~L~~idtnq~~n~~aav--SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtv 296 (420)
T KOG2096|consen 219 QLLQSIDTNQSSNYDAAV--SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTV 296 (420)
T ss_pred ceeeeeccccccccceee--CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEE
Confidence 999988766655566666 5688999999999999999753 223455788999999999999999999999
Q ss_pred ecCCCCceeEEEEeCCCC-------eeeeeee--cccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEec
Q 001352 549 GTSKEGESFLVEWNESEG-------AIKRTYQ--GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 619 (1093)
Q Consensus 549 ~~~~~~~~~i~iwd~~~~-------~~~~~~~--~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 619 (1093)
+. |+.+++||..-. +.+++.. .+. .......+..+|+|+.|+... ...+.++..++|+....+..
T Consensus 297 Sk----DG~wriwdtdVrY~~~qDpk~Lk~g~~pl~a-ag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~ 370 (420)
T KOG2096|consen 297 SK----DGKWRIWDTDVRYEAGQDPKILKEGSAPLHA-AGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELED 370 (420)
T ss_pred ec----CCcEEEeeccceEecCCCchHhhcCCcchhh-cCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHH
Confidence 87 677999997521 2222221 111 123445899999998766643 45799999999887766653
Q ss_pred CCCCCCCceEEEecCCCEEEEEECCCeEEEEEcC
Q 001352 620 GGGLPENPRICFNKNGTLLAVIANENRIKILETP 653 (1093)
Q Consensus 620 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 653 (1093)
- +...|.+++|+++|++++++++ ..++++.-.
T Consensus 371 ~-h~~~Is~is~~~~g~~~atcGd-r~vrv~~nt 402 (420)
T KOG2096|consen 371 I-HSTTISSISYSSDGKYIATCGD-RYVRVIRNT 402 (420)
T ss_pred h-hcCceeeEEecCCCcEEeeecc-eeeeeecCC
Confidence 2 2245899999999999999875 677776633
No 119
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.4e-23 Score=202.96 Aligned_cols=272 Identities=16% Similarity=0.230 Sum_probs=223.3
Q ss_pred EEEEEcCCEEEEEEccCCC---------cccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEe
Q 001352 412 LGVAYSKHIVQLYAYHGGS---------DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 482 (1093)
Q Consensus 412 las~~~d~~i~iwd~~~~~---------~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~ 482 (1093)
|++|+....|.-+++.-.. .+.+...+..|.++|++++.+ +. ++++||.|-+|+|||+.+...+..+
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~--~~aSGssDetI~IYDm~k~~qlg~l 79 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GP--YVASGSSDETIHIYDMRKRKQLGIL 79 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ce--eEeccCCCCcEEEEeccchhhhcce
Confidence 5566666655555543211 123345677899999999996 45 8999999999999999999999999
Q ss_pred ecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEe
Q 001352 483 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 562 (1093)
Q Consensus 483 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd 562 (1093)
-.|.+.|+++.|.+......|++|+.||.|.+|+...-.....+..|.+.|+.++++|.|++.++.+. |..+++||
T Consensus 80 l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~----D~~lr~WN 155 (362)
T KOG0294|consen 80 LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGG----DQVLRTWN 155 (362)
T ss_pred eccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcC----Cceeeeeh
Confidence 99999999999987665568999999999999999999889999999999999999999999998875 77899999
Q ss_pred CCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEE
Q 001352 563 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 642 (1093)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 642 (1093)
+-+|+.-....-.. ....+.|+|.|.+++.++.++ |-||.+.+......+... ..+.++.|. ++..|++|.
T Consensus 156 LV~Gr~a~v~~L~~----~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~~i~~~---~r~l~~~~l-~~~~L~vG~ 226 (362)
T KOG0294|consen 156 LVRGRVAFVLNLKN----KATLVSWSPQGDHFVVSGRNK-IDIYQLDNASVFREIENP---KRILCATFL-DGSELLVGG 226 (362)
T ss_pred hhcCccceeeccCC----cceeeEEcCCCCEEEEEeccE-EEEEecccHhHhhhhhcc---ccceeeeec-CCceEEEec
Confidence 99988766555433 345599999999998888765 899999988777666543 224555554 577899999
Q ss_pred CCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeecc
Q 001352 643 NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 720 (1093)
Q Consensus 643 ~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~ 720 (1093)
+|+.|.+||..+..+...+.+|...|..+.+-. .|++.+++++++||.|++||++...
T Consensus 227 d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~--------------------~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 227 DNEWISLKDTDSDTPLTEFLAHENRVKDIASYT--------------------NPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred CCceEEEeccCCCccceeeecchhheeeeEEEe--------------------cCCceEEEEeccCceEEEEEccccc
Confidence 999999999999999999999999998887431 5788999999999999999987553
No 120
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.7e-24 Score=201.45 Aligned_cols=252 Identities=20% Similarity=0.322 Sum_probs=209.1
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeC--CCCcEEEEEEcCCCcEEE
Q 001352 393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKV 470 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~--d~~~l~l~s~~~d~~i~v 470 (1093)
...|++-|..+...--|++||+|+.|++|+|+.+..+.....+.++.||.++|+.++|.. -|. +|++++.||.|.|
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVIi 84 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVII 84 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEEE
Confidence 557999999999888899999999999999999998877677779999999999999976 677 8999999999999
Q ss_pred EECCCCce--eEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCC---ceEEecCCCCceEEEEEccC---C
Q 001352 471 WDAVTGSR--TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG---ARVDYDAPGLGCTRMAYSAN---G 542 (1093)
Q Consensus 471 wd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~s~d---~ 542 (1093)
|.-+.|+- .+....|...|++++|.|..-|-.|++++.||.|.+.+++... .......|.-.|++++|.|- |
T Consensus 85 Wke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g 164 (299)
T KOG1332|consen 85 WKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPG 164 (299)
T ss_pred EecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCc
Confidence 99887753 4566789999999999999999999999999999999988762 23345667888999999986 4
Q ss_pred -----------CEEEEEecCCCCceeEEEEeCCCCe--eeeeeecccccCCCeEEEEEcCCC----CEEEEEeCCCcEEE
Q 001352 543 -----------RRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAK----DQILAAGDDHVIKI 605 (1093)
Q Consensus 543 -----------~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~v~~~~~~----~~l~~~~~dg~i~i 605 (1093)
+.|++++. |..|.+|+..+++ ..+++.+|. +.|+.++|.|.- .+|+++++||++.|
T Consensus 165 ~~~~~~~~~~~krlvSgGc----Dn~VkiW~~~~~~w~~e~~l~~H~---dwVRDVAwaP~~gl~~s~iAS~SqDg~viI 237 (299)
T KOG1332|consen 165 SLVDQGPAAKVKRLVSGGC----DNLVKIWKFDSDSWKLERTLEGHK---DWVRDVAWAPSVGLPKSTIASCSQDGTVII 237 (299)
T ss_pred cccccCcccccceeeccCC----ccceeeeecCCcchhhhhhhhhcc---hhhhhhhhccccCCCceeeEEecCCCcEEE
Confidence 56888876 7779999988763 345577777 999999999974 57899999999999
Q ss_pred EECCCC--ceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001352 606 WDMNKV--QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 654 (1093)
Q Consensus 606 wd~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 654 (1093)
|..... ....++. +.....+..+.||..|+.|++++.|+.+.+|.-..
T Consensus 238 wt~~~e~e~wk~tll-~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 238 WTKDEEYEPWKKTLL-EEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred EEecCccCccccccc-ccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 976632 1122221 12234588999999999999999999999998653
No 121
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=5.6e-23 Score=231.33 Aligned_cols=248 Identities=12% Similarity=0.171 Sum_probs=189.6
Q ss_pred EEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCC-CCcEEEEEEcCCCcEEEEECCCCc--------eeEEeecC
Q 001352 415 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGS--------RTYSFEGH 485 (1093)
Q Consensus 415 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d-~~~l~l~s~~~d~~i~vwd~~~~~--------~~~~~~~h 485 (1093)
|+.++.|++|+..... ....+.+|.+.|.+++|+|+ +. +|+||+.|++|+|||+.++. ++..+.+|
T Consensus 50 GG~~gvI~L~~~~r~~---~v~~L~gH~~~V~~lafsP~~~~--lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP---PVIKLKGHTSSILDLQFNPCFSE--ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCc---eEEEEcCCCCCEEEEEEcCCCCC--EEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence 5567889999987653 33478899999999999997 56 89999999999999998642 34567899
Q ss_pred CCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001352 486 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 565 (1093)
Q Consensus 486 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~ 565 (1093)
...|.+++|+|... .++++++.|++|++||+++......+. +...|.+++|+|+|.+|++++. ++.|++||+++
T Consensus 125 ~~~V~sVaf~P~g~-~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~----D~~IrIwD~Rs 198 (568)
T PTZ00420 125 KKKISIIDWNPMNY-YIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCV----GKHMHIIDPRK 198 (568)
T ss_pred CCcEEEEEECCCCC-eEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEec----CCEEEEEECCC
Confidence 99999999987532 356799999999999999888766665 4568999999999999998875 66799999999
Q ss_pred CeeeeeeecccccCCCe-----EEEEEcCCCCEEEEEeCCC----cEEEEECCC-CceEEEEecCCCCCCCceEEEecCC
Q 001352 566 GAIKRTYQGLQLQHNSV-----SVVHFDTAKDQILAAGDDH----VIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNG 635 (1093)
Q Consensus 566 ~~~~~~~~~~~~~~~~v-----~~v~~~~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~ 635 (1093)
++.+..+.+|. +.+ ....|++++.++++++.++ .|+|||+++ ++++..+..+.....+......++|
T Consensus 199 g~~i~tl~gH~---g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg 275 (568)
T PTZ00420 199 QEIASSFHIHD---GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTG 275 (568)
T ss_pred CcEEEEEeccc---CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCC
Confidence 99999998887 432 2334568999999988764 799999985 6667666555443323333334568
Q ss_pred CEEEEEECCCeEEEEEcCCCceeeecc-cccccceeeeecCC
Q 001352 636 TLLAVIANENRIKILETPESNSVDAAG-VLSDNLRKLSVNPI 676 (1093)
Q Consensus 636 ~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~i~~~~~~~~ 676 (1093)
.++++|+.|+.|++|++..+.....-. .+..+..+++|.|.
T Consensus 276 ~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pk 317 (568)
T PTZ00420 276 LIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPK 317 (568)
T ss_pred CEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEccc
Confidence 899999999999999998663221111 13445566666653
No 122
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.8e-20 Score=205.25 Aligned_cols=278 Identities=13% Similarity=0.174 Sum_probs=234.5
Q ss_pred cCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCC-CcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352 394 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 472 (1093)
Q Consensus 394 ~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 472 (1093)
..|...-+.++|.|+|.+|++++.||.|++|+..+. +... .+..+...|.+++... . .|++|+.+++|.+|.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~---ti~~~g~~v~~ia~~s--~--~f~~~s~~~tv~~y~ 82 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE---TIDISGELVSSIACYS--N--HFLTGSEQNTVLRYK 82 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc---hhhccCceeEEEeecc--c--ceEEeeccceEEEee
Confidence 368899999999999999999999999999998876 3222 3334777888877654 3 699999999999999
Q ss_pred CCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001352 473 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 552 (1093)
Q Consensus 473 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~ 552 (1093)
...++.-..+...+-+++.+++ +.+|.+++.||.|-.|++-++........+.+|..+|.++.|+|++++||+.+.
T Consensus 83 fps~~~~~iL~Rftlp~r~~~v--~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~-- 158 (933)
T KOG1274|consen 83 FPSGEEDTILARFTLPIRDLAV--SGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSC-- 158 (933)
T ss_pred CCCCCccceeeeeeccceEEEE--ecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEec--
Confidence 9998877666677788999998 567789999999999999999999999999999999999999999999999876
Q ss_pred CCceeEEEEeCCCCeeeeeeeccccc-----CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCc
Q 001352 553 EGESFLVEWNESEGAIKRTYQGLQLQ-----HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 627 (1093)
Q Consensus 553 ~~~~~i~iwd~~~~~~~~~~~~~~~~-----~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 627 (1093)
+|.|++||+.++.+..++.+.... ...+..++|+|++..++..+.|+.|.+|+..+......+........+.
T Consensus 159 --dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~ 236 (933)
T KOG1274|consen 159 --DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFS 236 (933)
T ss_pred --CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceE
Confidence 778999999999988777664321 2346778999999999999999999999999999998887665555588
Q ss_pred eEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCc
Q 001352 628 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS 688 (1093)
Q Consensus 628 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 688 (1093)
.+.|+|+|+|||+++.+|.|.|||..+.. .......|.+++|.|....+..-...+.
T Consensus 237 ~~~wsPnG~YiAAs~~~g~I~vWnv~t~~----~~~~~~~Vc~~aw~p~~n~it~~~~~g~ 293 (933)
T KOG1274|consen 237 DLQWSPNGKYIAASTLDGQILVWNVDTHE----RHEFKRAVCCEAWKPNANAITLITALGT 293 (933)
T ss_pred EEEEcCCCcEEeeeccCCcEEEEecccch----hccccceeEEEecCCCCCeeEEEeeccc
Confidence 99999999999999999999999999721 1555678999999988877665444443
No 123
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.2e-21 Score=213.91 Aligned_cols=511 Identities=16% Similarity=0.169 Sum_probs=324.8
Q ss_pred cccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCc-cEEEEEecCCeEEEEEcC
Q 001352 440 AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYD 518 (1093)
Q Consensus 440 ~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~dg~i~vwd~~ 518 (1093)
|-...-....||+|++. ++... +..|.||...||.++..+.+|..++.++.+.+.... .++++++.||.|++||..
T Consensus 14 g~n~~~~~avfSnD~k~--l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~ 90 (792)
T KOG1963|consen 14 GRNGNKSPAVFSNDAKF--LFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWS 90 (792)
T ss_pred cccceecccccccCCcE--EEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCC
Confidence 33333445679999994 44333 568999999999999999999999999999877664 678899999999999999
Q ss_pred CCCceEEecCCCCceEEEEEcc---CCCEEEEEecCCCCceeEEEEeCCCCeee-------------eeeecccccCCCe
Q 001352 519 SLGARVDYDAPGLGCTRMAYSA---NGRRLFSCGTSKEGESFLVEWNESEGAIK-------------RTYQGLQLQHNSV 582 (1093)
Q Consensus 519 ~~~~~~~~~~~~~~v~~~~~s~---d~~~l~~~~~~~~~~~~i~iwd~~~~~~~-------------~~~~~~~~~~~~v 582 (1093)
.+....++.... ++..+.+.| +-...+..+. +....+........... .....+. .-
T Consensus 91 ~~~Llkt~~~~~-~v~~~~~~~~~a~~s~~~~~s~--~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~----~~ 163 (792)
T KOG1963|consen 91 DGELLKTFDNNL-PVHALVYKPAQADISANVYVSV--EDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQ----EP 163 (792)
T ss_pred CcEEEEEEecCC-ceeEEEechhHhCccceeEeec--ccceeeeecccccccceeeeEeeeccccchhhhhhhc----CC
Confidence 888777665543 222333222 1111121111 00001111111111111 1111111 13
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE--ecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeee
Q 001352 583 SVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI--DAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDA 660 (1093)
Q Consensus 583 ~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 660 (1093)
.++.+++.+++....-. ..+.+|+..++...... ....+.-.+++.++||+++++|++..||.|.+|.--..
T Consensus 164 ~~I~~~~~ge~~~i~~~-~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~----- 237 (792)
T KOG1963|consen 164 KSIVDNNSGEFKGIVHM-CKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS----- 237 (792)
T ss_pred ccEEEcCCceEEEEEEe-eeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc-----
Confidence 56778887776666554 45888888775521111 01122334789999999999999999999999975431
Q ss_pred cccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEE
Q 001352 661 AGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISR 740 (1093)
Q Consensus 661 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~ 740 (1093)
.... -+.++|. . |...|.+
T Consensus 238 -~~~~-------------------------------------------~t~t~lH---------------W--H~~~V~~ 256 (792)
T KOG1963|consen 238 -SDDS-------------------------------------------ETCTLLH---------------W--HHDEVNS 256 (792)
T ss_pred -cccc-------------------------------------------ccceEEE---------------e--cccccce
Confidence 0000 0111111 0 6678999
Q ss_pred EEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEE
Q 001352 741 LTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFS 820 (1093)
Q Consensus 741 l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~ 820 (1093)
++|+++|.+|++|+.+|.+.+|.+..++. .. +|. -..+|..+.+|||+.+.+.
T Consensus 257 L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k----------------------qf---LPR--Lgs~I~~i~vS~ds~~~sl 309 (792)
T KOG1963|consen 257 LSFSSDGAYLLSGGREGVLVLWQLETGKK----------------------QF---LPR--LGSPILHIVVSPDSDLYSL 309 (792)
T ss_pred eEEecCCceEeecccceEEEEEeecCCCc----------------------cc---ccc--cCCeeEEEEEcCCCCeEEE
Confidence 99999999999999999999998765421 11 111 5778999999999998887
Q ss_pred Ee-CCeEEEEEccCceeEEEECC---C--------CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecc----
Q 001352 821 AS-GGVISLYIVMTFKTILTIMP---P--------SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE---- 884 (1093)
Q Consensus 821 ~~-dg~i~iwd~~~~~~~~~~~~---~--------~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~---- 884 (1093)
.. |+.|.+....+.....++.+ . .+-.+.++++| ..+.++-.+..|.|.+||+.+.+.+..+.
T Consensus 310 ~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~ 388 (792)
T KOG1963|consen 310 VLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDE 388 (792)
T ss_pred EecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEee
Confidence 75 89998887765544444332 2 23457788999 67788888899999999998876655442
Q ss_pred -------cccCCeEEEEEeCCCCEEEEEeC--------CC--cEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEcc
Q 001352 885 -------GHSKRVTGLVFSDALNILVSSGG--------DA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK 947 (1093)
Q Consensus 885 -------~h~~~V~~l~~s~dg~~l~s~s~--------dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 947 (1093)
.+.-.+++++.+-.|.+++|.-. || .+++|-...........-.....|.. ..+..+.+++
T Consensus 389 n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~--~~vat~~~~~ 466 (792)
T KOG1963|consen 389 NYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGN--AFVATIFLNP 466 (792)
T ss_pred cccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCc--eeEEEEEecC
Confidence 12345788888889999998632 33 47889877654332222222222222 1233333444
Q ss_pred CCC-EEEE-EeCCeEEEEEcCCccee---------eeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC-CceEE
Q 001352 948 DQT-RFLL-VHETHLAIYEAEELTCL---------KQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN-LEVQC 1015 (1093)
Q Consensus 948 dg~-~l~~-~~d~~i~vwd~~~~~~~---------~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~-~~~~~ 1015 (1093)
-.. ..++ +.||.+++|-..+.+.+ ..+-.-|..++++++||.||+.|+ ++.|++|.+||..+ .++.+
T Consensus 467 ~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla-~s~~~~Itiwd~~~~~~l~~ 545 (792)
T KOG1963|consen 467 TRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLA-VSFDDTITIWDYDTKNELLC 545 (792)
T ss_pred cccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEE-EecCCEEEEecCCChhhhhc
Confidence 333 5555 68999999988433211 111223688999999999997666 55788999999999 56655
Q ss_pred EeccccccCCCCCCCccceeEE-EeCCCCCCEEEEEeCCCcEEEEecCCCCCCc
Q 001352 1016 RILSTAYLRPTTSCLHVYPHAI-AAHPLKPTQFAVGLTNGEVYVIEPNEPGDTW 1068 (1093)
Q Consensus 1016 ~~~~~~~~~~~~~~~~v~~~~~-~~~p~d~~~l~~~~~dg~v~~w~~~~~~~~~ 1068 (1093)
......+.. ..++. +-.+ ....+.....+.+.+|++.....-|
T Consensus 546 ~~~~~~~~~--------~~~~~~~~~~--~~~~~~~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 546 TEGSRNWPI--------AELLFTAQTQ--NDGALVHATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred cccccccch--------HhHhhhcccc--cccceeeccCceEehHhhhhhheec
Confidence 554222111 11111 1122 2344555677889999998877777
No 124
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=3.3e-23 Score=220.87 Aligned_cols=275 Identities=15% Similarity=0.213 Sum_probs=222.6
Q ss_pred cccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeE-EE
Q 001352 732 KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPC-FA 810 (1093)
Q Consensus 732 ~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-l~ 810 (1093)
.+|...|..+++.+.. .++.++.||++++|+-..+.. +-...+ .++.+.+.+ ++
T Consensus 11 ~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~----------------------l~~~~~--~~~~g~i~~~i~ 65 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQY----------------------LETHAF--EGPKGFIANSIC 65 (745)
T ss_pred ccCccchheeEecCCe-EEeecCCCCceeeeeccCccc----------------------ccceec--ccCcceeeccce
Confidence 4588888888876655 689999999999997322211 110111 135555655 77
Q ss_pred Ecc-CCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccC
Q 001352 811 LSK-NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK 888 (1093)
Q Consensus 811 ~s~-dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~ 888 (1093)
+.+ ++-.+++|+ |.+|.+|......+...+.+|...|+++.... ++. +++|+.|.++++|-. +++...+++|..
T Consensus 66 y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~a 141 (745)
T KOG0301|consen 66 YAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRI--GELVYSLQGHTA 141 (745)
T ss_pred eccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecc--hhhhcccCCcch
Confidence 764 444466666 89999999999999999999999999999887 665 899999999999976 467777999999
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCc
Q 001352 889 RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL 968 (1093)
Q Consensus 889 ~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~ 968 (1093)
.|+++++-|++ .++|||.|++|++|.-.+ .++++.+|.. .|+.+++-+++.+|-++.||.|++|++ +|
T Consensus 142 sVWAv~~l~e~-~~vTgsaDKtIklWk~~~-------~l~tf~gHtD---~VRgL~vl~~~~flScsNDg~Ir~w~~-~g 209 (745)
T KOG0301|consen 142 SVWAVASLPEN-TYVTGSADKTIKLWKGGT-------LLKTFSGHTD---CVRGLAVLDDSHFLSCSNDGSIRLWDL-DG 209 (745)
T ss_pred heeeeeecCCC-cEEeccCcceeeeccCCc-------hhhhhccchh---heeeeEEecCCCeEeecCCceEEEEec-cC
Confidence 99999999987 899999999999998755 7788889886 899999999999999999999999999 78
Q ss_pred ceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEE
Q 001352 969 TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFA 1048 (1093)
Q Consensus 969 ~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~ 1048 (1093)
+++.. ..+|..-|.++...+++..++++++|+++++|+.. ++...+. +|.. .+++ +.+-+ +.-++
T Consensus 210 e~l~~-~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~----lPtt----siWs--a~~L~--NgDIv 274 (745)
T KOG0301|consen 210 EVLLE-MHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVIT----LPTT----SIWS--AKVLL--NGDIV 274 (745)
T ss_pred ceeee-eeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEe----cCcc----ceEE--EEEee--CCCEE
Confidence 88887 56899999999988999999999999999999987 6665555 3332 3554 33333 34699
Q ss_pred EEeCCCcEEEEecC
Q 001352 1049 VGLTNGEVYVIEPN 1062 (1093)
Q Consensus 1049 ~~~~dg~v~~w~~~ 1062 (1093)
+|+.||.|+||-..
T Consensus 275 vg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 275 VGGSDGRVRVFTVD 288 (745)
T ss_pred EeccCceEEEEEec
Confidence 99999999999875
No 125
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.91 E-value=1.8e-23 Score=213.11 Aligned_cols=262 Identities=17% Similarity=0.262 Sum_probs=210.2
Q ss_pred cCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC-CCE
Q 001352 333 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-GSL 411 (1093)
Q Consensus 333 ~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d-g~~ 411 (1093)
.|.++|+.+.+-|....++|+++..+.|.|||..+-.-..... ..|. ....+.||...=..++|++. .-+
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~------~~~~---Pdl~L~gH~~eg~glsWn~~~~g~ 192 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKAS------GECR---PDLRLKGHEKEGYGLSWNRQQEGT 192 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccccc------ccCC---CceEEEeeccccccccccccccee
Confidence 4889999999999999899999999999999997643322100 0011 11238899998888999995 458
Q ss_pred EEEEEcCCEEEEEEccCCCc----ccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECC--CCceeEEeecC
Q 001352 412 LGVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV--TGSRTYSFEGH 485 (1093)
Q Consensus 412 las~~~d~~i~iwd~~~~~~----~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~--~~~~~~~~~~h 485 (1093)
|++++.|++|++||+..... +.....+.+|...|..++|++-... ++++++.|+.+.|||++ +.++.+...+|
T Consensus 193 Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah 271 (422)
T KOG0264|consen 193 LLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPSHSVKAH 271 (422)
T ss_pred EeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCccccccc
Confidence 89999999999999986543 5566678899999999999998776 79999999999999999 56677788899
Q ss_pred CCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEccCCCEEE-EEecCCCCceeEEEEeC
Q 001352 486 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLF-SCGTSKEGESFLVEWNE 563 (1093)
Q Consensus 486 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~d~~~l~-~~~~~~~~~~~i~iwd~ 563 (1093)
.++|++++|+|.. +..||+||.|++|.+||+++... ...+..|...|..+.|||....++ +++. ++.+.+||+
T Consensus 272 ~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~----D~rl~vWDl 346 (422)
T KOG0264|consen 272 SAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGT----DRRLNVWDL 346 (422)
T ss_pred CCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEeccc----CCcEEEEec
Confidence 9999999999875 57999999999999999998654 568899999999999999776554 4443 778999998
Q ss_pred CCCeeee-----------eeecccccCCCeEEEEEcCCCCEEEE-EeCCCcEEEEECC
Q 001352 564 SEGAIKR-----------TYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMN 609 (1093)
Q Consensus 564 ~~~~~~~-----------~~~~~~~~~~~v~~v~~~~~~~~l~~-~~~dg~i~iwd~~ 609 (1093)
..-...+ .+-.|..|...|..+.|+|+..++++ .++|+.+.||...
T Consensus 347 s~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 347 SRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 7432221 12223334488999999999887665 8899999999975
No 126
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=1.2e-23 Score=214.82 Aligned_cols=290 Identities=14% Similarity=0.188 Sum_probs=230.5
Q ss_pred HhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC
Q 001352 329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 408 (1093)
Q Consensus 329 ~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d 408 (1093)
.+| .|..-|.++++|...++ +.+|+. |.|+|||+....... +....-......-|.++..+||
T Consensus 414 ~tL-~HGEvVcAvtIS~~trh-VyTgGk-gcVKVWdis~pg~k~--------------PvsqLdcl~rdnyiRSckL~pd 476 (705)
T KOG0639|consen 414 NTL-AHGEVVCAVTISNPTRH-VYTGGK-GCVKVWDISQPGNKS--------------PVSQLDCLNRDNYIRSCKLLPD 476 (705)
T ss_pred hhh-ccCcEEEEEEecCCcce-eEecCC-CeEEEeeccCCCCCC--------------ccccccccCcccceeeeEecCC
Confidence 344 47778888999999886 788876 889999996542110 1111002234578999999999
Q ss_pred CCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCC
Q 001352 409 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 488 (1093)
Q Consensus 409 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~ 488 (1093)
|+.|++|+.-.++.|||+..... +...++..-.-...+++.+||.+ +.+++..||.|.|||+.....++.|+||...
T Consensus 477 grtLivGGeastlsiWDLAapTp-rikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGhtDG 553 (705)
T KOG0639|consen 477 GRTLIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG 553 (705)
T ss_pred CceEEeccccceeeeeeccCCCc-chhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCCCC
Confidence 99999999999999999987543 22223333344677899999999 8999999999999999999999999999999
Q ss_pred eEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCee
Q 001352 489 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 568 (1093)
Q Consensus 489 v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~ 568 (1093)
+.||.+ +.||..|.+|+-|++||.||++.+....... ....|.++.++|.+.++++|-. .+.+.+.... +..
T Consensus 554 ascIdi--s~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMe----ns~vevlh~s-kp~ 625 (705)
T KOG0639|consen 554 ASCIDI--SKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGME----NSNVEVLHTS-KPE 625 (705)
T ss_pred ceeEEe--cCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecc----cCcEEEEecC-Ccc
Confidence 999988 5688999999999999999999877665443 3457899999999999999875 4446666643 333
Q ss_pred eeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEE
Q 001352 569 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 648 (1093)
Q Consensus 569 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 648 (1093)
...+..|. ..|.++.|.+.|+++++.+.|+-+..|...-|..+...... ..|.++.+|.|.+++++|+.|..-.
T Consensus 626 kyqlhlhe---ScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~---SsVlsCDIS~ddkyIVTGSGdkkAT 699 (705)
T KOG0639|consen 626 KYQLHLHE---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISFDDKYIVTGSGDKKAT 699 (705)
T ss_pred ceeecccc---cEEEEEEecccCceeeecCchhhhhhccCccccceeecccc---CcceeeeeccCceEEEecCCCcceE
Confidence 34444444 89999999999999999999999999999888877666533 4689999999999999999998888
Q ss_pred EEEc
Q 001352 649 ILET 652 (1093)
Q Consensus 649 iw~~ 652 (1093)
+|.+
T Consensus 700 VYeV 703 (705)
T KOG0639|consen 700 VYEV 703 (705)
T ss_pred EEEE
Confidence 8865
No 127
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.2e-22 Score=195.99 Aligned_cols=299 Identities=15% Similarity=0.215 Sum_probs=224.5
Q ss_pred CchHHHHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeE
Q 001352 322 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 401 (1093)
Q Consensus 322 ~~p~~~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 401 (1093)
.+|..+..+|.... -.|+.||+.|. +||+|..||.|.|||..|...-+. +.+|..+|+
T Consensus 12 ~~PEel~~tld~~~--a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~iar~-------------------lsaH~~pi~ 69 (405)
T KOG1273|consen 12 EYPEELTHTLDNPL--AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIARM-------------------LSAHVRPIT 69 (405)
T ss_pred cChHhhceeccCCc--cceEEeccCcc-eeeeeccCCcEEEEEccccchhhh-------------------hhcccccee
Confidence 66777777887332 78999999998 599999999999999998764433 788999999
Q ss_pred EEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEE
Q 001352 402 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 481 (1093)
Q Consensus 402 ~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~ 481 (1093)
+++||+||+.|+++|.|..|++||+..|.+++.+ ....+|+.+.|.|-..+..+++- .+..-.+-++..++.. .
T Consensus 70 sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri----rf~spv~~~q~hp~k~n~~va~~-~~~sp~vi~~s~~~h~-~ 143 (405)
T KOG1273|consen 70 SLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI----RFDSPVWGAQWHPRKRNKCVATI-MEESPVVIDFSDPKHS-V 143 (405)
T ss_pred EEEecCCCCEeeeecCCceeEEEeccCCCceeEE----EccCccceeeeccccCCeEEEEE-ecCCcEEEEecCCcee-e
Confidence 9999999999999999999999999999877643 25679999999998776444443 3444555555542211 1
Q ss_pred ee-cCCCCeEEe--eecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC-CceEEEEEccCCCEEEEEecCCCCcee
Q 001352 482 FE-GHGAPVYSL--CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESF 557 (1093)
Q Consensus 482 ~~-~h~~~v~~~--~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~s~d~~~l~~~~~~~~~~~~ 557 (1093)
+. ...+..+.. +-..++.|+++++|...|.+.++|..+.+.+..+.... ..|..+.++..|+.++..+. +..
T Consensus 144 Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts----DRv 219 (405)
T KOG1273|consen 144 LPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS----DRV 219 (405)
T ss_pred ccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC----Cce
Confidence 11 111111111 11235677899999999999999999998888776665 68999999999999999876 778
Q ss_pred EEEEeCCC-------Cee--eeeeecccccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEecCCCCCCCc
Q 001352 558 LVEWNESE-------GAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENP 627 (1093)
Q Consensus 558 i~iwd~~~-------~~~--~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 627 (1093)
|+.|+++. ++. .+.++..- ....-.+++|+.+|.|+++++ ....++||....|.+++.+.+..+ ....
T Consensus 220 IR~ye~~di~~~~r~~e~e~~~K~qDvV-Nk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kg-E~l~ 297 (405)
T KOG1273|consen 220 IRTYEISDIDDEGRDGEVEPEHKLQDVV-NKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKG-EELL 297 (405)
T ss_pred EEEEehhhhcccCccCCcChhHHHHHHH-hhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCch-hhee
Confidence 99998762 111 12222111 123456789999999998866 567899999999999999987654 3467
Q ss_pred eEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001352 628 RICFNKNGTLLAVIANENRIKILETPES 655 (1093)
Q Consensus 628 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 655 (1093)
.+.|+|-...+++. ..|.+++|.....
T Consensus 298 DV~whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 298 DVNWHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred ecccccceeeeeec-cCCceEEEEeecc
Confidence 88999988777777 6799999987643
No 128
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=2.8e-23 Score=193.47 Aligned_cols=254 Identities=16% Similarity=0.214 Sum_probs=203.9
Q ss_pred hccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC--C
Q 001352 331 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--D 408 (1093)
Q Consensus 331 l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~--d 408 (1093)
-.+|.+-|..+...--|++ |||++.|++|+|+.+.+.....- ...|.||.++|..++|.. -
T Consensus 7 dt~H~D~IHda~lDyygkr-lATcsSD~tVkIf~v~~n~~s~l----------------l~~L~Gh~GPVwqv~wahPk~ 69 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKR-LATCSSDGTVKIFEVRNNGQSKL----------------LAELTGHSGPVWKVAWAHPKF 69 (299)
T ss_pred hhhhhhhhhHhhhhhhcce-eeeecCCccEEEEEEcCCCCcee----------------eeEecCCCCCeeEEeeccccc
Confidence 3478889999999999996 99999999999999987654211 112889999999999987 7
Q ss_pred CCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCC-c--eeEEeecC
Q 001352 409 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-S--RTYSFEGH 485 (1093)
Q Consensus 409 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~--~~~~~~~h 485 (1093)
|.+||+++.||.|.||.-++|+ ..+......|...|++++|.|.+-.+.|++++.||.|.|.+.++. . ..+....|
T Consensus 70 G~iLAScsYDgkVIiWke~~g~-w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH 148 (299)
T KOG1332|consen 70 GTILASCSYDGKVIIWKEENGR-WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAH 148 (299)
T ss_pred CcEeeEeecCceEEEEecCCCc-hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcc
Confidence 9999999999999999999884 444446778999999999999988889999999999999987654 2 22345679
Q ss_pred CCCeEEeeecccCC-c-----------cEEEEEecCCeEEEEEcCCCCc--eEEecCCCCceEEEEEccCC----CEEEE
Q 001352 486 GAPVYSLCPHAKEN-I-----------HFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANG----RRLFS 547 (1093)
Q Consensus 486 ~~~v~~~~~~~~~~-~-----------~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~s~d~----~~l~~ 547 (1093)
.-.|++++|.|..- | ..|++|+.|..|+||+.++..- ...+..|...|+.++|.|.- .++++
T Consensus 149 ~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS 228 (299)
T KOG1332|consen 149 EIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIAS 228 (299)
T ss_pred ccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEE
Confidence 99999999987521 1 5699999999999999987632 23578899999999999964 47888
Q ss_pred EecCCCCceeEEEEeCCCC--eee-eeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001352 548 CGTSKEGESFLVEWNESEG--AIK-RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 609 (1093)
Q Consensus 548 ~~~~~~~~~~i~iwd~~~~--~~~-~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~ 609 (1093)
|+. ++.+.||..... ... ..+.... ..+..+.|++.|+.|++++.|+.|.+|.-.
T Consensus 229 ~Sq----Dg~viIwt~~~e~e~wk~tll~~f~---~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 229 CSQ----DGTVIIWTKDEEYEPWKKTLLEEFP---DVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ecC----CCcEEEEEecCccCcccccccccCC---cceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 876 667999976521 111 1122222 679999999999999999999999999754
No 129
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=4.5e-23 Score=210.66 Aligned_cols=283 Identities=12% Similarity=0.160 Sum_probs=223.4
Q ss_pred ccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEc
Q 001352 733 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS 812 (1093)
Q Consensus 733 ~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 812 (1093)
.|..-|.++++|...+++.+++. |.|+|||+..... ......+......+.++++.+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~---------------------k~PvsqLdcl~rdnyiRSckL~ 474 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGN---------------------KSPVSQLDCLNRDNYIRSCKLL 474 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCC---------------------CCccccccccCcccceeeeEec
Confidence 37788899999999998887765 5899999864311 0111112222356788999999
Q ss_pred cCCCEEEEEeC-CeEEEEEccCcee--EEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCC
Q 001352 813 KNDAYLFSASG-GVISLYIVMTFKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR 889 (1093)
Q Consensus 813 ~dg~~la~~~d-g~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~ 889 (1093)
|||+.|++|+. .++.|||+..-.. ...+........+++.+| |.++.++++.||.|.|||+.+...++.|+||.+.
T Consensus 475 pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDG 553 (705)
T KOG0639|consen 475 PDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG 553 (705)
T ss_pred CCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCC
Confidence 99999999985 8899999986543 333443445677899999 9999999999999999999999999999999999
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcCCc
Q 001352 890 VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEEL 968 (1093)
Q Consensus 890 V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~vwd~~~~ 968 (1093)
+.|+.+++||..|-||+-|.+||-||+..+.... ...-. ..|.++..+|.+.+|++| .++.+.|......
T Consensus 554 ascIdis~dGtklWTGGlDntvRcWDlregrqlq-----qhdF~----SQIfSLg~cP~~dWlavGMens~vevlh~skp 624 (705)
T KOG0639|consen 554 ASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQ-----QHDFS----SQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP 624 (705)
T ss_pred ceeEEecCCCceeecCCCccceeehhhhhhhhhh-----hhhhh----hhheecccCCCccceeeecccCcEEEEecCCc
Confidence 9999999999999999999999999998854221 11111 258899999999999997 5567888776544
Q ss_pred ceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEE
Q 001352 969 TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFA 1048 (1093)
Q Consensus 969 ~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~ 1048 (1093)
+.-. ..-|...|.++.|++.|+++++.+.|.-+-.|...-|..+.... ..+.|.++.++++ .++++
T Consensus 625 ~kyq--lhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk---------E~SsVlsCDIS~d---dkyIV 690 (705)
T KOG0639|consen 625 EKYQ--LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK---------ESSSVLSCDISFD---DKYIV 690 (705)
T ss_pred ccee--ecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc---------ccCcceeeeeccC---ceEEE
Confidence 4322 44589999999999999999999999999999999997774443 2445776767665 58999
Q ss_pred EEeCCCcEEEEec
Q 001352 1049 VGLTNGEVYVIEP 1061 (1093)
Q Consensus 1049 ~~~~dg~v~~w~~ 1061 (1093)
||+.|..-.+|++
T Consensus 691 TGSGdkkATVYeV 703 (705)
T KOG0639|consen 691 TGSGDKKATVYEV 703 (705)
T ss_pred ecCCCcceEEEEE
Confidence 9999998888876
No 130
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.4e-22 Score=204.25 Aligned_cols=288 Identities=14% Similarity=0.215 Sum_probs=234.1
Q ss_pred CCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCC-EEE
Q 001352 335 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS-LLG 413 (1093)
Q Consensus 335 ~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~-~la 413 (1093)
.+.|+++.|+|.-. +|.+++.||+++||.+.........+ +.--..+|.+.+|.|+|. .++
T Consensus 213 ~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~lqS-----------------~~l~~fPi~~a~f~p~G~~~i~ 274 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKLQS-----------------IHLEKFPIQKAEFAPNGHSVIF 274 (514)
T ss_pred cCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhhee-----------------eeeccCccceeeecCCCceEEE
Confidence 34999999999998 78999999999999987543322111 112457899999999999 899
Q ss_pred EEEcCCEEEEEEccCCCcccceEEecccc-ccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEe
Q 001352 414 VAYSKHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 492 (1093)
Q Consensus 414 s~~~d~~i~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~ 492 (1093)
+++....++.||+.+.+..+ +..+.++. ..+.....|++++ +|+..|..|.|.+-...+++.+.+++ -.+.|..+
T Consensus 275 ~s~rrky~ysyDle~ak~~k-~~~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~ 350 (514)
T KOG2055|consen 275 TSGRRKYLYSYDLETAKVTK-LKPPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDF 350 (514)
T ss_pred ecccceEEEEeecccccccc-ccCCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheee-eccEEeeE
Confidence 99999999999999977433 33444554 3577888999999 89999999999999999999999887 67789999
Q ss_pred eecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC-ceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC------
Q 001352 493 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL-GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE------ 565 (1093)
Q Consensus 493 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~------ 565 (1093)
+|+ .+++.|++++.+|.|.+||++.......+...++ .-++++.+++|.++|+|+. .|.|.|||.++
T Consensus 351 ~fs--Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~----~GiVNIYd~~s~~~s~~ 424 (514)
T KOG2055|consen 351 TFS--SDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD----SGIVNIYDGNSCFASTN 424 (514)
T ss_pred EEe--cCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC----cceEEEeccchhhccCC
Confidence 995 5778999999999999999999988887766554 4578889999999999986 77899999653
Q ss_pred CeeeeeeecccccCCCeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceEEEEecC-CCCCCCceEEEecCCCEEEEEE
Q 001352 566 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAG-GGLPENPRICFNKNGTLLAVIA 642 (1093)
Q Consensus 566 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~ 642 (1093)
.+++..+.... ..|.++.|+++.+.|+.+| ....+++-++.+......++.. .....++|++|||.+.++|+|.
T Consensus 425 PkPik~~dNLt---t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGN 501 (514)
T KOG2055|consen 425 PKPIKTVDNLT---TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGN 501 (514)
T ss_pred CCchhhhhhhh---eeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeec
Confidence 34555555555 7899999999999988876 5678999998887776666543 3345689999999999999999
Q ss_pred CCCeEEEEEcC
Q 001352 643 NENRIKILETP 653 (1093)
Q Consensus 643 ~dg~i~iw~~~ 653 (1093)
.+|.+.+|.+.
T Consensus 502 e~grv~l~kL~ 512 (514)
T KOG2055|consen 502 EAGRVHLFKLH 512 (514)
T ss_pred CCCceeeEeec
Confidence 99999999874
No 131
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=5.4e-21 Score=209.58 Aligned_cols=289 Identities=11% Similarity=0.054 Sum_probs=212.2
Q ss_pred EEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEE-EEEEcCCEEEEEEccC
Q 001352 350 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAYHG 428 (1093)
Q Consensus 350 llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~l-as~~~d~~i~iwd~~~ 428 (1093)
++++++.|+.|++||+.+++.+.. +..+ ..+.+++|+|||+.+ ++++.++.|++||..+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~-------------------~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~ 62 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRT-------------------FPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLAT 62 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEE-------------------EECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCC
Confidence 688999999999999999887654 3333 346789999999987 5667889999999998
Q ss_pred CCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEec
Q 001352 429 GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV 508 (1093)
Q Consensus 429 ~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~ 508 (1093)
++... .+..+.. +..++|+|+++. ++++++.|+.|++||+.+++.+..+.. ...+.+++++ +++.++++++.
T Consensus 63 ~~~~~---~~~~~~~-~~~~~~~~~g~~-l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~--~dg~~l~~~~~ 134 (300)
T TIGR03866 63 GEVIG---TLPSGPD-PELFALHPNGKI-LYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVS--PDGKIVVNTSE 134 (300)
T ss_pred CcEEE---eccCCCC-ccEEEECCCCCE-EEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEEC--CCCCEEEEEec
Confidence 86544 3433433 567899999984 345556789999999999888877753 3345677774 46778888887
Q ss_pred CC-eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccc----cCCCeE
Q 001352 509 DG-KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL----QHNSVS 583 (1093)
Q Consensus 509 dg-~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~----~~~~v~ 583 (1093)
++ .+.+||..+......... ......++|+|+++++++++. .++.|.+||+.+++.+..+..+.. ......
T Consensus 135 ~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~---~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (300)
T TIGR03866 135 TTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSE---IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPV 210 (300)
T ss_pred CCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcC---CCCEEEEEEcCcceeeeeeeecccccccccCCcc
Confidence 65 567789877655443322 234577999999998876542 256799999999988776643210 011235
Q ss_pred EEEEcCCCCEEEE-EeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEE-ECCCeEEEEEcCCCceeeec
Q 001352 584 VVHFDTAKDQILA-AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAA 661 (1093)
Q Consensus 584 ~v~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~ 661 (1093)
.++|+|+++++++ .+.++.+.+||..+++....+... ..+.+++|+|+|++|+++ ..+|.|.+||..+++.+..+
T Consensus 211 ~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~ 287 (300)
T TIGR03866 211 GIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVG---QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSI 287 (300)
T ss_pred ceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeC---CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 6889999998655 456778999999998887665432 247899999999999886 45899999999999888777
Q ss_pred ccccccceeeeec
Q 001352 662 GVLSDNLRKLSVN 674 (1093)
Q Consensus 662 ~~~~~~i~~~~~~ 674 (1093)
+.. ...+.++++
T Consensus 288 ~~~-~~~~~~~~~ 299 (300)
T TIGR03866 288 KVG-RLPWGVVVR 299 (300)
T ss_pred Ecc-cccceeEeC
Confidence 653 333555554
No 132
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=1.1e-20 Score=207.20 Aligned_cols=279 Identities=18% Similarity=0.237 Sum_probs=202.2
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEE-EEEECCCeEEEEEcCCCceeeeccccccccee
Q 001352 592 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAAGVLSDNLRK 670 (1093)
Q Consensus 592 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~ 670 (1093)
..+++++.|+.+++||+.+++.+..+..+. .+..++|+|+++.+ ++++.++.|++|+..+++....+.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~---~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-------- 70 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ---RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP-------- 70 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC---CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc--------
Confidence 467888999999999999999888887543 25789999999876 456678899999876542211100
Q ss_pred eeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceE
Q 001352 671 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI 750 (1093)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l 750 (1093)
T Consensus 71 -------------------------------------------------------------------------------- 70 (300)
T TIGR03866 71 -------------------------------------------------------------------------------- 70 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe--CCeEEE
Q 001352 751 FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISL 828 (1093)
Q Consensus 751 ~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~--dg~i~i 828 (1093)
....+..++++|+++.++++. ++.+++
T Consensus 71 ---------------------------------------------------~~~~~~~~~~~~~g~~l~~~~~~~~~l~~ 99 (300)
T TIGR03866 71 ---------------------------------------------------SGPDPELFALHPNGKILYIANEDDNLVTV 99 (300)
T ss_pred ---------------------------------------------------CCCCccEEEECCCCCEEEEEcCCCCeEEE
Confidence 000123466778877665543 578999
Q ss_pred EEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCC-eEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEE-e
Q 001352 829 YIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS-G 906 (1093)
Q Consensus 829 wd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg-~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~-s 906 (1093)
||+.+++.+..+.. ...+.+++|+| +++++++++.++ .+.+||..+++....+.. ...+.+++|+|++++|+.+ .
T Consensus 100 ~d~~~~~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~ 176 (300)
T TIGR03866 100 IDIETRKVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSE 176 (300)
T ss_pred EECCCCeEEeEeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcC
Confidence 99988877777653 33467899999 899999888775 567789988877655432 3346789999999988544 4
Q ss_pred CCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE--EeCCeEEEEEcCCcceeeeeecCCCCCEEE
Q 001352 907 GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTCLKQWFPISSVPISQ 984 (1093)
Q Consensus 907 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~--~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~ 984 (1093)
.++.|++||+.+++............+.. ......++|+|+++++++ +.++.+.+||..+++.+.... +...+.+
T Consensus 177 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~ 253 (300)
T TIGR03866 177 IGGTVSVIDVATRKVIKKITFEIPGVHPE-AVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL--VGQRVWQ 253 (300)
T ss_pred CCCEEEEEEcCcceeeeeeeecccccccc-cCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE--eCCCcce
Confidence 69999999999876433211111111100 112457899999998655 456789999999888776543 3457889
Q ss_pred EEEccCCCEEEEE-eCCCcEEEEEcCCCceEEEec
Q 001352 985 ATFSCDCRMVFTS-FVDGTLSIHEASNLEVQCRIL 1018 (1093)
Q Consensus 985 ~~fs~dg~~l~t~-~~dg~v~vwd~~~~~~~~~~~ 1018 (1093)
++|+|+|++|+++ +.+|.|.+||+.+++.+.++.
T Consensus 254 ~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 254 LAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 9999999999876 468999999999999988886
No 133
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.90 E-value=2.7e-21 Score=204.07 Aligned_cols=450 Identities=13% Similarity=0.137 Sum_probs=290.6
Q ss_pred cEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCce
Q 001352 444 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR 523 (1093)
Q Consensus 444 ~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 523 (1093)
.|..++|-|||.+++++. +..+.+||...|..++++++|...|+++++ +.||+.+++|+.|..|.+|.-.-.+.
T Consensus 14 ci~d~afkPDGsqL~lAA---g~rlliyD~ndG~llqtLKgHKDtVycVAy--s~dGkrFASG~aDK~VI~W~~klEG~- 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA---GSRLLVYDTSDGTLLQPLKGHKDTVYCVAY--AKDGKRFASGSADKSVIIWTSKLEGI- 87 (1081)
T ss_pred chheeEECCCCceEEEec---CCEEEEEeCCCcccccccccccceEEEEEE--ccCCceeccCCCceeEEEecccccce-
Confidence 799999999999744433 346999999999999999999999999999 56889999999999999996543222
Q ss_pred EEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcE
Q 001352 524 VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVI 603 (1093)
Q Consensus 524 ~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i 603 (1093)
.. -.|+..|.|+.|+|-...|++|+-+. .-+|........+. +. ...+.+++|..||++++.|-.+|+|
T Consensus 88 Lk-YSH~D~IQCMsFNP~~h~LasCsLsd-----FglWS~~qK~V~K~-ks----s~R~~~CsWtnDGqylalG~~nGTI 156 (1081)
T KOG1538|consen 88 LK-YSHNDAIQCMSFNPITHQLASCSLSD-----FGLWSPEQKSVSKH-KS----SSRIICCSWTNDGQYLALGMFNGTI 156 (1081)
T ss_pred ee-eccCCeeeEeecCchHHHhhhcchhh-----ccccChhhhhHHhh-hh----heeEEEeeecCCCcEEEEeccCceE
Confidence 22 34777899999999999999998532 66888665443222 11 2568999999999999999999999
Q ss_pred EEEECCCCceEEEEecCCCCCCCceEEEecCC-----CEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCc
Q 001352 604 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNG-----TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPIST 678 (1093)
Q Consensus 604 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~-----~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 678 (1093)
.+-+....+....-...+...+|.+++|+|.. ..+++.....++.++.+... .+..-+...-.-.|+.+
T Consensus 157 siRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~-~Igk~r~L~FdP~CisY----- 230 (1081)
T KOG1538|consen 157 SIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK-QIGKDRALNFDPCCISY----- 230 (1081)
T ss_pred EeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce-eecccccCCCCchhhee-----
Confidence 99875444444433444556789999999953 35777777777777776532 33322222222223333
Q ss_pred eeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccce
Q 001352 679 VTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGV 758 (1093)
Q Consensus 679 ~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~ 758 (1093)
.++|.+++.|+.|+.+.+|..+.-..+ . .. .....|..++..|+++.++.++.||+
T Consensus 231 -----------------f~NGEy~LiGGsdk~L~~fTR~GvrLG---T--vg--~~D~WIWtV~~~PNsQ~v~~GCqDGT 286 (1081)
T KOG1538|consen 231 -----------------FTNGEYILLGGSDKQLSLFTRDGVRLG---T--VG--EQDSWIWTVQAKPNSQYVVVGCQDGT 286 (1081)
T ss_pred -----------------ccCCcEEEEccCCCceEEEeecCeEEe---e--cc--ccceeEEEEEEccCCceEEEEEccCe
Confidence 378888999999999888874311100 0 01 14568999999999999999999999
Q ss_pred eEEeeecCcccCc---------------------Cc---------------------ccccccCCcccCCCCCCceeecc
Q 001352 759 HLMWRWPRNDLTL---------------------ST---------------------EATTKVPPRLYQPRHGPQFMVND 796 (1093)
Q Consensus 759 v~vw~~~~~~~~~---------------------~~---------------------~~~~~~~~~~~~~~~~~~~~~~~ 796 (1093)
+..|++....... .+ ..+....+.+|...++.. ....
T Consensus 287 iACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrnrLAVQLpeki~iYel~se~~-~~mh 365 (1081)
T KOG1538|consen 287 IACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRNRLAVQLPEKILIYELYSEDL-SDMH 365 (1081)
T ss_pred eehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhhhheecccceEEEEecccccc-ccch
Confidence 9999886544300 00 001111223333322220 0000
Q ss_pred CCCCC-CCCCeeEEEEccCCCEEEEEeCCeEEEEEccCcee--------EEEECCCCCCeEEEEEcCCCCCEEEEEeCCC
Q 001352 797 TTDSN-SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT--------ILTIMPPSPTATSLAFNPHDNNVIAIGMDDS 867 (1093)
Q Consensus 797 ~~~~~-~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~--------~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg 867 (1093)
.+... -.....|--.---+..++.+.+..+..+|...-+. ++-++...+ |.+..-|+.|..+|
T Consensus 366 Y~v~ekI~kkf~cSLlVVc~~HiVlCqekrLqClDF~Gvk~ReW~M~S~iRYikV~GG--------P~gREgL~vGlknG 437 (1081)
T KOG1538|consen 366 YRVKEKIIKKFECSLLVVCANHIVLCQEKRLQCLDFSGVKEREWQMESLIRYIKVIGG--------PPGREGLLVGLKNG 437 (1081)
T ss_pred hHHHHHHHhhccceEEEEEcCeEEEEcccceeeecccchhhhhhhHHHHHHhhhhhcC--------CCCcceeEEEecCC
Confidence 00000 00000111111124455555566777777653211 111111111 22556788898888
Q ss_pred eEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEcc
Q 001352 868 TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK 947 (1093)
Q Consensus 868 ~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 947 (1093)
.|.-.=+++.-++.. ......|.|+.++...+.||+..+.++..++|+.+++. .++.+ .+.+++|+.
T Consensus 438 qV~kiF~dN~~PiLl-~~~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~el----L~QEp--------g~nSV~wNT 504 (1081)
T KOG1538|consen 438 QVLKIFVDNLFPILL-LKQATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKEL----LFQEP--------GANSVAWNT 504 (1081)
T ss_pred cEEEEEecCCchhhe-ecccceeEEeeccCCcceEEEEccCCeEEEEEccCCce----EeecC--------CCceEEeec
Confidence 665433444333322 22456799999999999999999999999999999763 33332 477899988
Q ss_pred CCCEEEE-EeCCeEEE
Q 001352 948 DQTRFLL-VHETHLAI 962 (1093)
Q Consensus 948 dg~~l~~-~~d~~i~v 962 (1093)
...-+++ +..|.+.|
T Consensus 505 ~~E~MlcfT~~g~L~V 520 (1081)
T KOG1538|consen 505 QCEDMLCFTGGGYLNV 520 (1081)
T ss_pred cccceEEEecCCceEE
Confidence 7655544 55565554
No 134
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=4.3e-22 Score=202.43 Aligned_cols=290 Identities=14% Similarity=0.231 Sum_probs=224.9
Q ss_pred CCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccce
Q 001352 624 PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI 703 (1093)
Q Consensus 624 ~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~ 703 (1093)
..|+++.|+|....+++++.|++++||.+....-. .++++.+
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~--------~lqS~~l------------------------------ 255 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP--------KLQSIHL------------------------------ 255 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCccCh--------hheeeee------------------------------
Confidence 56999999999999999999999999988744111 0111111
Q ss_pred eecccccceecceeeccCccccccccCccccccceEEEEeecCCc-eEEEeeccceeEEeeecCcccCcCcccccccCCc
Q 001352 704 SVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ-AIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR 782 (1093)
Q Consensus 704 s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~-~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~ 782 (1093)
...+|.+..|.|+|. .+++++....++.||+...+..+-
T Consensus 256 ------------------------------~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~---------- 295 (514)
T KOG2055|consen 256 ------------------------------EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKL---------- 295 (514)
T ss_pred ------------------------------ccCccceeeecCCCceEEEecccceEEEEeeccccccccc----------
Confidence 345688889999999 778888888899999876543111
Q ss_pred ccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEE
Q 001352 783 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 861 (1093)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la 861 (1093)
.+..|. ....+....+||++++|+..+ .|.|.+....+++.+..++ -.+.|..++|+. |++.|+
T Consensus 296 --~~~~g~-----------e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS-dsk~l~ 360 (514)
T KOG2055|consen 296 --KPPYGV-----------EEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS-DSKELL 360 (514)
T ss_pred --cCCCCc-----------ccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEec-CCcEEE
Confidence 111111 234567788999999999998 5999999999999998887 667899999998 889999
Q ss_pred EEeCCCeEEEEEcCCcceeeecccccC-CeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCcee-eeeeeecCCCcccCCCC
Q 001352 862 IGMDDSTILIYNARSSEVISKLEGHSK-RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ-TCRSLQTPDGVMTLAPS 939 (1093)
Q Consensus 862 sg~~dg~i~iwd~~~~~~~~~l~~h~~-~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~ 939 (1093)
+.+.+|.|.+||+....++.++....+ .-++++.|++|.+||+|+..|.|.|||.++.-.. ..+++.....-. ..
T Consensus 361 ~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt---t~ 437 (514)
T KOG2055|consen 361 ASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT---TA 437 (514)
T ss_pred EEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhh---ee
Confidence 999999999999999999988874322 2356788899999999999999999997762211 112333332222 37
Q ss_pred ceEEEEccCCCEEEEE---eCCeEEEEEcCCcceeeeeecCC--CCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 001352 940 ETHIQFHKDQTRFLLV---HETHLAIYEAEELTCLKQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1009 (1093)
Q Consensus 940 v~~~~~s~dg~~l~~~---~d~~i~vwd~~~~~~~~~~~~~h--~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~ 1009 (1093)
|++++|+||+++||++ ..+.+++-.+.+......|.... -+.|++++|||.|.+|+.|..+|.|.+|.+.
T Consensus 438 Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 438 ITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 9999999999999984 46789999998888777765433 5689999999999999999999999999874
No 135
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=3.3e-22 Score=204.02 Aligned_cols=293 Identities=15% Similarity=0.201 Sum_probs=230.1
Q ss_pred EEEEEccCC-cEEEEecCCCceeEEeeeeeeecccccceeeeeeecCC-CCCeEEEEECCCCCEEEEEE-cCCEEEEEEc
Q 001352 350 LLLVGTNVG-DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP-GVSVNRVVWSPDGSLLGVAY-SKHIVQLYAY 426 (1093)
Q Consensus 350 llasg~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~v~~s~dg~~las~~-~d~~i~iwd~ 426 (1093)
++.+++.|. ++.+||+.||..... +++. ...-.++.. -.+.|++++. ....+.+|.+
T Consensus 9 ~~sssS~d~~~~~~~dl~TGt~~~~-------------------ykg~~~a~~~sl~~-l~~~yllsaq~~rp~l~vw~i 68 (476)
T KOG0646|consen 9 VCSSSSFDPINCIVWDLRTGTSLLQ-------------------YKGSYLAQAASLTA-LNNEYLLSAQLKRPLLHVWEI 68 (476)
T ss_pred EEeccCCCCcceeEEecCCCceeEE-------------------ecCcccccchhhhh-hchhheeeecccCcccccccc
Confidence 344455554 499999999987654 1111 000001110 0246777774 3457999999
Q ss_pred cCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEE
Q 001352 427 HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI 506 (1093)
Q Consensus 427 ~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~ 506 (1093)
.......+. .--.++|.+++-+|+|. +|+.|+..|.|++|.+.+|..+..+.+|-..|+++.| +.||.+|++|
T Consensus 69 ~k~~~~~q~---~v~Pg~v~al~s~n~G~--~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~f--s~dgs~iiTg 141 (476)
T KOG0646|consen 69 LKKDQVVQY---IVLPGPVHALASSNLGY--FLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKF--SDDGSHIITG 141 (476)
T ss_pred Cchhhhhhh---cccccceeeeecCCCce--EEEeecccCcEEEEEeccccHHHHHHhhccceeEEEE--eCCCcEEEec
Confidence 875544322 23467899999999998 7888889999999999999999999999999999999 6688999999
Q ss_pred ecCCeEEEEEcC---------CCCceEEecCCCCceEEEEEccC--CCEEEEEecCCCCceeEEEEeCCCCeeeeeeecc
Q 001352 507 SVDGKIKAWLYD---------SLGARVDYDAPGLGCTRMAYSAN--GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 575 (1093)
Q Consensus 507 ~~dg~i~vwd~~---------~~~~~~~~~~~~~~v~~~~~s~d--~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 575 (1093)
+.||.|.+|.+. +......+..|.-+|+.+...+. ..++++++. |.++++||+..|.++.++...
T Consensus 142 skDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~----D~t~k~wdlS~g~LLlti~fp 217 (476)
T KOG0646|consen 142 SKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASE----DRTIKLWDLSLGVLLLTITFP 217 (476)
T ss_pred CCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecC----CceEEEEEeccceeeEEEecC
Confidence 999999999763 33456678888889999887765 457888876 788999999999998888764
Q ss_pred cccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc----------------eEEEEecCCCCCCCceEEEecCCCEEE
Q 001352 576 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ----------------LLTTIDAGGGLPENPRICFNKNGTLLA 639 (1093)
Q Consensus 576 ~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~----------------~~~~~~~~~~~~~v~~v~~s~~~~~l~ 639 (1093)
..+.+++.+|.+..+++|+++|.|.+.++..-. .+..+.++.....|+|++++-||.+|+
T Consensus 218 ----~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl 293 (476)
T KOG0646|consen 218 ----SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL 293 (476)
T ss_pred ----CcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE
Confidence 489999999999999999999999998875422 234445555545899999999999999
Q ss_pred EEECCCeEEEEEcCCCceeeecccccccceeeeecCCC
Q 001352 640 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPIS 677 (1093)
Q Consensus 640 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~ 677 (1093)
+|+.||.+.|||..+.+.++++....++|+.+.+.|..
T Consensus 294 SGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~ 331 (476)
T KOG0646|consen 294 SGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLE 331 (476)
T ss_pred eeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccc
Confidence 99999999999999999999988888899988887653
No 136
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=1.2e-21 Score=189.68 Aligned_cols=272 Identities=14% Similarity=0.099 Sum_probs=213.2
Q ss_pred CCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECC
Q 001352 395 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 474 (1093)
Q Consensus 395 ~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~ 474 (1093)
...+.|+++.|+|.+..|++++.||++++||+...+... .-.|..++.+++|.++.+ +++|+.||.|+.+|+.
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~----~~~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dln 83 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL----KFKHGAPLLDCAFADEST---IVTGGLDGQVRRYDLN 83 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh----heecCCceeeeeccCCce---EEEeccCceEEEEEec
Confidence 357889999999999999999999999999999874333 225999999999999765 8999999999999999
Q ss_pred CCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCC
Q 001352 475 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 554 (1093)
Q Consensus 475 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~ 554 (1093)
++.... +..|..+|.++...+.. ..+++|+.|++|++||.+.......+.... .|.++.. .|+.|++++.
T Consensus 84 ~~~~~~-igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~v--~g~~LvVg~~---- 153 (323)
T KOG1036|consen 84 TGNEDQ-IGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMDV--SGNRLVVGTS---- 153 (323)
T ss_pred CCccee-eccCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccCc-eEEEEec--cCCEEEEeec----
Confidence 988654 44699999999987544 479999999999999998754444444433 6666654 4667777665
Q ss_pred ceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC----ceEEEEecCCC-------C
Q 001352 555 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGG-------L 623 (1093)
Q Consensus 555 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~-------~ 623 (1093)
+..+.+||+++.......... .-+..+.++++-|++.-+++++-||.|.+=.++.. +....+..|.. .
T Consensus 154 ~r~v~iyDLRn~~~~~q~reS-~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~ 232 (323)
T KOG1036|consen 154 DRKVLIYDLRNLDEPFQRRES-SLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEII 232 (323)
T ss_pred CceEEEEEcccccchhhhccc-cceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEE
Confidence 667999999876543321111 11367899999999999999999999988666554 33334444421 2
Q ss_pred CCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeec
Q 001352 624 PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGI 684 (1093)
Q Consensus 624 ~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 684 (1093)
.+|++++|+|-...+++|+.||.|.+||..+.+.+..+......|..++|+.++..+|++.
T Consensus 233 yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 233 YPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred EEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEe
Confidence 3589999999999999999999999999999999998888888899999986666555443
No 137
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=9.7e-22 Score=187.92 Aligned_cols=319 Identities=13% Similarity=0.192 Sum_probs=232.3
Q ss_pred cCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC-CCCE
Q 001352 333 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSL 411 (1093)
Q Consensus 333 ~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~-dg~~ 411 (1093)
.|.+.|+.+...|...+++.+|+.||.|.+||++.-..-....+-. + ..|. ....--.+|.-.|..+.|-| |...
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~-k-~~c~--v~~~h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIA-K-HKCI--VAKQHENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhcccee-h-eeee--ccccCCccceeeeeeeEEeeecCce
Confidence 4889999999998655579999999999999997654211000000 0 0010 11112557889999999999 6778
Q ss_pred EEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCC-cEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeE
Q 001352 412 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK-QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 490 (1093)
Q Consensus 412 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~-~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~ 490 (1093)
+.+++.|.+++|||.++-+... .+ ...+.|.+-++||-.. .-++++|..|-.|++-|+.+|.+-+++.||.+.|.
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~---~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vl 192 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAV---DF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVL 192 (397)
T ss_pred eecccccceEEEeecccceeeE---Ee-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceE
Confidence 8899999999999999865433 33 2456788888888543 33678888888999999999999999999999999
Q ss_pred EeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeee
Q 001352 491 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 570 (1093)
Q Consensus 491 ~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 570 (1093)
++.|+|..+ -.|++|+.||.|++||++.. .++.++.|..+++...
T Consensus 193 aV~Wsp~~e-~vLatgsaDg~irlWDiRra----------------------------------sgcf~~lD~hn~k~~p 237 (397)
T KOG4283|consen 193 AVEWSPSSE-WVLATGSADGAIRLWDIRRA----------------------------------SGCFRVLDQHNTKRPP 237 (397)
T ss_pred EEEeccCce-eEEEecCCCceEEEEEeecc----------------------------------cceeEEeecccCccCc
Confidence 999998754 68899999999999998752 1123444444433333
Q ss_pred eeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecC----CCCCCCceEEEecCCCEEEEEECCCe
Q 001352 571 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG----GGLPENPRICFNKNGTLLAVIANENR 646 (1093)
Q Consensus 571 ~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~v~~v~~s~~~~~l~~~~~dg~ 646 (1093)
.++....|.+.+..++|+.++.++++.+.|..+++|+..+|+....-... .....-..+. +.+...++.--.++.
T Consensus 238 ~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~ 316 (397)
T KOG4283|consen 238 ILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGS 316 (397)
T ss_pred cccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCe
Confidence 33322334488999999999999999999999999999988654222111 0000001122 344555666666799
Q ss_pred EEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceeccee
Q 001352 647 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 717 (1093)
Q Consensus 647 i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~ 717 (1093)
+.++++.++..++.+..|...+.|.++. |+-+...+++.|+.+..|-..
T Consensus 317 lall~~~sgs~ir~l~~h~k~i~c~~~~----------------------~~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 317 LALLNLLEGSFVRRLSTHLKRINCAAYR----------------------PDFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred EEEEEccCceEEEeeecccceeeEEeec----------------------CchhhhhccccCCcccccccc
Confidence 9999999999999999998888888775 666778888999998888753
No 138
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=6.3e-22 Score=191.13 Aligned_cols=282 Identities=15% Similarity=0.223 Sum_probs=214.2
Q ss_pred eEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCcee
Q 001352 400 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 479 (1093)
Q Consensus 400 V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~ 479 (1093)
-.|+.||+.|.+||+|+.||.|.|||+.|...-+ .+.+|..+|++++||+||+ .|+|++.|..|.+||+..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence 7899999999999999999999999999976444 6789999999999999999 8999999999999999999999
Q ss_pred EEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC----ceEEEEEccCCCEEEEEecCCCCc
Q 001352 480 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL----GCTRMAYSANGRRLFSCGTSKEGE 555 (1093)
Q Consensus 480 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~----~v~~~~~s~d~~~l~~~~~~~~~~ 555 (1093)
+.+. ...+|+.+.|+|......+++--... -.+-++........-....+ ...+..|.+.|+++++|.. .
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~~~~~s-p~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts----K 174 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVATIMEES-PVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS----K 174 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEEEecCC-cEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC----c
Confidence 9987 78899999999987765555544333 44444444222221111111 1233468899999999975 7
Q ss_pred eeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-------ceE--EEEecCCCCCCC
Q 001352 556 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-------QLL--TTIDAGGGLPEN 626 (1093)
Q Consensus 556 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~-------~~~--~~~~~~~~~~~v 626 (1093)
|.+.++|..+-+++..++-.. ...|..+.++..|.+++.-+.|+.||.|++..- +.. +.+..--....-
T Consensus 175 Gkllv~~a~t~e~vas~rits--~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~W 252 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRITS--VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQW 252 (405)
T ss_pred ceEEEEecchheeeeeeeech--heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhh
Confidence 789999999999988877544 367899999999999999999999999998631 110 111100011224
Q ss_pred ceEEEecCCCEEEEEEC-CCeEEEEEcCCCceeeeccccc-ccceeeeecCCCceeeeeccCCceEecCCCCCCCcccee
Q 001352 627 PRICFNKNGTLLAVIAN-ENRIKILETPESNSVDAAGVLS-DNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 704 (1093)
Q Consensus 627 ~~v~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s 704 (1093)
.+++|+.+|.+++.++. ...++||....+..++.+.|.. +....+.+.|.... +++
T Consensus 253 k~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~----------------------i~s 310 (405)
T KOG1273|consen 253 KKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPI----------------------IAS 310 (405)
T ss_pred hheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceee----------------------eee
Confidence 67899999999988765 5789999999999999999877 55666677654333 333
Q ss_pred ecccccceeccee
Q 001352 705 VEAENKSEVEKPL 717 (1093)
Q Consensus 705 ~~~d~~i~~w~~~ 717 (1093)
- ..|.+.+|...
T Consensus 311 i-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 311 I-ASGVVYIWAVV 322 (405)
T ss_pred c-cCCceEEEEee
Confidence 3 55889999854
No 139
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=6.4e-22 Score=201.93 Aligned_cols=255 Identities=16% Similarity=0.164 Sum_probs=206.9
Q ss_pred ceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEcc
Q 001352 348 HTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH 427 (1093)
Q Consensus 348 ~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~ 427 (1093)
.|++++-..-..+.+|.+........ ..+ -.++|.|++-+|+|.+|+.|+..|.|++|.+.
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q----------------~~v---~Pg~v~al~s~n~G~~l~ag~i~g~lYlWels 111 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQ----------------YIV---LPGPVHALASSNLGYFLLAGTISGNLYLWELS 111 (476)
T ss_pred hheeeecccCccccccccCchhhhhh----------------hcc---cccceeeeecCCCceEEEeecccCcEEEEEec
Confidence 35555544556788888876554431 111 34689999999999999999999999999999
Q ss_pred CCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECC---------CCceeEEeecCCCCeEEeeecccC
Q 001352 428 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---------TGSRTYSFEGHGAPVYSLCPHAKE 498 (1093)
Q Consensus 428 ~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~---------~~~~~~~~~~h~~~v~~~~~~~~~ 498 (1093)
+|..+. .+.+|-..|+|+.|+.||. +++|||.||.|.+|++. +-++++.|..|.-+|+++...+.+
T Consensus 112 sG~LL~---v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg 186 (476)
T KOG0646|consen 112 SGILLN---VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGG 186 (476)
T ss_pred cccHHH---HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCC
Confidence 998777 5678999999999999999 89999999999999763 346788999999999999987776
Q ss_pred CccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC-------------
Q 001352 499 NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE------------- 565 (1093)
Q Consensus 499 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~------------- 565 (1093)
-..+++++|.|.++++||+..+..+..+..+ ..+.+++.+|-++.+++|+. ++.|.+.++..
T Consensus 187 ~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp-~si~av~lDpae~~~yiGt~----~G~I~~~~~~~~~~~~~~v~~k~~ 261 (476)
T KOG0646|consen 187 TNARLYTASEDRTIKLWDLSLGVLLLTITFP-SSIKAVALDPAERVVYIGTE----EGKIFQNLLFKLSGQSAGVNQKGR 261 (476)
T ss_pred ccceEEEecCCceEEEEEeccceeeEEEecC-CcceeEEEcccccEEEecCC----cceEEeeehhcCCccccccccccc
Confidence 6679999999999999999998777666543 47899999999999999986 56677665432
Q ss_pred ---CeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecC
Q 001352 566 ---GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 634 (1093)
Q Consensus 566 ---~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 634 (1093)
+..+..+.||.. ...|+|++++-||..|++|+.||.|+|||+.+.++++++... .++|+.+.+.|-
T Consensus 262 ~~~~t~~~~~~Gh~~-~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~--kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 262 HEENTQINVLVGHEN-ESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTS--KGPVTNLQINPL 330 (476)
T ss_pred ccccceeeeeccccC-CcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhh--ccccceeEeecc
Confidence 234556677761 138999999999999999999999999999999999888632 345888888664
No 140
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.89 E-value=1.3e-21 Score=199.61 Aligned_cols=253 Identities=19% Similarity=0.326 Sum_probs=202.6
Q ss_pred ecCCCCCeEEEEECCCC-CEEEEEEcCCEEEEEEccCCCcc-------cceEEeccccccEEEEEeeCCCCcEEEEEEcC
Q 001352 393 VRDPGVSVNRVVWSPDG-SLLGVAYSKHIVQLYAYHGGSDA-------RQQLEIDAHVGNVNDLAFSAPCKQISVITCGD 464 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~dg-~~las~~~d~~i~iwd~~~~~~~-------~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~ 464 (1093)
...|.+.|+.+.+-|.. ..+|+.+..+.|.|||...-... +....+.||...-..++|++.... .+++++.
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g-~Lls~~~ 198 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG-TLLSGSD 198 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce-eEeeccC
Confidence 34599999999999955 56677788889999998753322 233368899998888999998766 7999999
Q ss_pred CCcEEEEECCCCc-------eeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcC--CCCceEEecCCCCceEE
Q 001352 465 DKTIKVWDAVTGS-------RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD--SLGARVDYDAPGLGCTR 535 (1093)
Q Consensus 465 d~~i~vwd~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~v~~ 535 (1093)
|++|++||+.... ....+.+|...|..++|++... .++++++.|+.+.+||++ +.+.......|...+.+
T Consensus 199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~ 277 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNC 277 (422)
T ss_pred CCcEEEEeccccccCCccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeE
Confidence 9999999987543 2456789999999999998754 689999999999999999 55566678889999999
Q ss_pred EEEccCCC-EEEEEecCCCCceeEEEEeCCCC-eeeeeeecccccCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCc
Q 001352 536 MAYSANGR-RLFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQ 612 (1093)
Q Consensus 536 ~~~s~d~~-~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~~~dg~i~iwd~~~~~ 612 (1093)
++|+|-+. .||+++. +++|.+||+++- +.+.++.+|. ..|.+|.|+|... .+++++.|+.+.|||+..-.
T Consensus 278 ~~fnp~~~~ilAT~S~----D~tV~LwDlRnL~~~lh~~e~H~---dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig 350 (422)
T KOG0264|consen 278 VAFNPFNEFILATGSA----DKTVALWDLRNLNKPLHTFEGHE---DEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIG 350 (422)
T ss_pred EEeCCCCCceEEeccC----CCcEEEeechhcccCceeccCCC---cceEEEEeCCCCCceeEecccCCcEEEEeccccc
Confidence 99999655 5556554 778999999875 4567777777 9999999999864 56668899999999987522
Q ss_pred eE------------EEEecCCCCCCCceEEEecCCC-EEEEEECCCeEEEEEcCC
Q 001352 613 LL------------TTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILETPE 654 (1093)
Q Consensus 613 ~~------------~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iw~~~~ 654 (1093)
.. -.+...++...|..+.|+|+.. .+++++.|+.+.||.+..
T Consensus 351 ~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 351 EEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 21 2244556777899999999765 577789999999999874
No 141
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=1.2e-21 Score=204.91 Aligned_cols=323 Identities=12% Similarity=0.167 Sum_probs=244.2
Q ss_pred CccCCchHHHHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCC
Q 001352 318 TSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG 397 (1093)
Q Consensus 318 ~~~~~~p~~~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 397 (1093)
..+..||..|...+.||++.|.|+...|.|. +||+|+.||+|+||.+.||.++.+..+ .
T Consensus 383 ~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~-wlasGsdDGtvriWEi~TgRcvr~~~~--------------------d 441 (733)
T KOG0650|consen 383 KDLRPFPTRCALVYRGHTGLVRSISVDPSGE-WLASGSDDGTVRIWEIATGRCVRTVQF--------------------D 441 (733)
T ss_pred hhcCCCcceeeeeEeccCCeEEEEEecCCcc-eeeecCCCCcEEEEEeecceEEEEEee--------------------c
Confidence 3456677788888899999999999999998 599999999999999999999986443 3
Q ss_pred CCeEEEEECCCCC--EEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEE----cCCCcEEEE
Q 001352 398 VSVNRVVWSPDGS--LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC----GDDKTIKVW 471 (1093)
Q Consensus 398 ~~V~~v~~s~dg~--~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~----~~d~~i~vw 471 (1093)
+.|.||+|+|.+. .||++-... +.|-+..-|..+... . ... .|+++ ..++.+..|
T Consensus 442 ~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~~-----~-----------t~e--ll~~~~~~~~p~~~~~~W 502 (733)
T KOG0650|consen 442 SEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEVG-----P-----------TKE--LLASAPNESEPDAAVVTW 502 (733)
T ss_pred ceeEEEEecCCCCceeEEEEecCc-eEEeCccccchhhhc-----c-----------hhh--hhhcCCCccCCcccceee
Confidence 5899999999765 455554444 666665555322210 0 001 12222 235567788
Q ss_pred ECCCCc----eeEEeecCCCCeEEeeecccCCccEEEEEecC---CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCE
Q 001352 472 DAVTGS----RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 544 (1093)
Q Consensus 472 d~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~ 544 (1093)
.-.... -++..-.|...|..+.|+. .|.||++...+ ..|.|..+........+....+.+.++.|+|...+
T Consensus 503 ~~~~~~e~~~~v~~~I~~~k~i~~vtWHr--kGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~ 580 (733)
T KOG0650|consen 503 SRASLDELEKGVCIVIKHPKSIRQVTWHR--KGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPY 580 (733)
T ss_pred chhhhhhhccceEEEEecCCccceeeeec--CCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCce
Confidence 644211 1334446999999999965 56799887664 45888988877777777777788999999999999
Q ss_pred EEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceEEEEecCCCC
Q 001352 545 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGL 623 (1093)
Q Consensus 545 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~ 623 (1093)
|++++ ...|++||+..+.+++.+.... ..|..++++|.|..|++|+.|+.+..+|+.-. ++.+++..|.
T Consensus 581 lfVaT-----q~~vRiYdL~kqelvKkL~tg~---kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~-- 650 (733)
T KOG0650|consen 581 LFVAT-----QRSVRIYDLSKQELVKKLLTGS---KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHE-- 650 (733)
T ss_pred EEEEe-----ccceEEEehhHHHHHHHHhcCC---eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhh--
Confidence 99887 4569999999988887776655 68999999999999999999999999999754 4556666554
Q ss_pred CCCceEEEecCCCEEEEEECCCeEEEEEcC------CC---ceeeeccccccc----ceeeeecCCCceeeeeccCCceE
Q 001352 624 PENPRICFNKNGTLLAVIANENRIKILETP------ES---NSVDAAGVLSDN----LRKLSVNPISTVTGAGIANGSVS 690 (1093)
Q Consensus 624 ~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~------~~---~~~~~~~~~~~~----i~~~~~~~~~~~~~~~~~~~~~~ 690 (1093)
..+++|+|++.-.++++|+.||++.|+... .+ -++..+++|... |....|+
T Consensus 651 ~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wH---------------- 714 (733)
T KOG0650|consen 651 KAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWH---------------- 714 (733)
T ss_pred hhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeeccc----------------
Confidence 458999999999999999999999998533 11 234566666554 4444454
Q ss_pred ecCCCCCCCccceeecccccceec
Q 001352 691 VNEDPKEDVKPEISVEAENKSEVE 714 (1093)
Q Consensus 691 ~~~~~s~d~~~l~s~~~d~~i~~w 714 (1093)
|...++++++.||+|++|
T Consensus 715 ------P~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 715 ------PRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ------CCCceEEecCCCceEEee
Confidence 778889999999999998
No 142
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.89 E-value=5e-20 Score=194.64 Aligned_cols=274 Identities=14% Similarity=0.148 Sum_probs=204.4
Q ss_pred CceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEE
Q 001352 337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 416 (1093)
Q Consensus 337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~ 416 (1093)
.|..++|-|||..|+..+ +..+.|||++.|..+.. +++|.+-|.|++||.||+++|+|+
T Consensus 14 ci~d~afkPDGsqL~lAA--g~rlliyD~ndG~llqt-------------------LKgHKDtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA--GSRLLVYDTSDGTLLQP-------------------LKGHKDTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred chheeEECCCCceEEEec--CCEEEEEeCCCcccccc-------------------cccccceEEEEEEccCCceeccCC
Confidence 799999999999766554 36899999999998876 889999999999999999999999
Q ss_pred cCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecc
Q 001352 417 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 496 (1093)
Q Consensus 417 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~ 496 (1093)
.|..|.+|.-.-...++ ..|.+.|.|+.|+|-.. .|+|++-. ..-+|..+..... .|...++.++.++
T Consensus 73 aDK~VI~W~~klEG~Lk-----YSH~D~IQCMsFNP~~h--~LasCsLs-dFglWS~~qK~V~----K~kss~R~~~CsW 140 (1081)
T KOG1538|consen 73 ADKSVIIWTSKLEGILK-----YSHNDAIQCMSFNPITH--QLASCSLS-DFGLWSPEQKSVS----KHKSSSRIICCSW 140 (1081)
T ss_pred CceeEEEecccccceee-----eccCCeeeEeecCchHH--Hhhhcchh-hccccChhhhhHH----hhhhheeEEEeee
Confidence 99999999976543332 26999999999999988 68888744 4778986554433 2443444444444
Q ss_pred cCCccEEEEEecCCeEEEEEcCCCCceEEec---CCCCceEEEEEccCCC-----EEEEEecCCCCceeEEEEeCCCCee
Q 001352 497 KENIHFIFSISVDGKIKAWLYDSLGARVDYD---APGLGCTRMAYSANGR-----RLFSCGTSKEGESFLVEWNESEGAI 568 (1093)
Q Consensus 497 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~s~d~~-----~l~~~~~~~~~~~~i~iwd~~~~~~ 568 (1093)
..||++++.|-.+|+|.+-+-. +++...+. +...+|.+++|+|... .+++... ..++..+.+ +|+.
T Consensus 141 tnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW----~qTLSFy~L-sG~~ 214 (1081)
T KOG1538|consen 141 TNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW----GQTLSFYQL-SGKQ 214 (1081)
T ss_pred cCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec----cceeEEEEe-ccee
Confidence 7899999999999999987543 33333333 3556899999999642 3333322 223444443 3444
Q ss_pred eeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEE
Q 001352 569 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 648 (1093)
Q Consensus 569 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 648 (1093)
+..-.... ....|+.+.++|.+++.|+.|+.+.+|-. .|-.+.++... ...|..++..|+++.+++|+.||+|.
T Consensus 215 Igk~r~L~---FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~--D~WIWtV~~~PNsQ~v~~GCqDGTiA 288 (1081)
T KOG1538|consen 215 IGKDRALN---FDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQ--DSWIWTVQAKPNSQYVVVGCQDGTIA 288 (1081)
T ss_pred ecccccCC---CCchhheeccCCcEEEEccCCCceEEEee-cCeEEeecccc--ceeEEEEEEccCCceEEEEEccCeee
Confidence 43222222 45678899999999999999999999964 45555555432 34699999999999999999999999
Q ss_pred EEEcCCC
Q 001352 649 ILETPES 655 (1093)
Q Consensus 649 iw~~~~~ 655 (1093)
.|++...
T Consensus 289 CyNl~fS 295 (1081)
T KOG1538|consen 289 CYNLIFS 295 (1081)
T ss_pred hhhhHHh
Confidence 9987643
No 143
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=2.8e-21 Score=196.42 Aligned_cols=302 Identities=18% Similarity=0.205 Sum_probs=227.0
Q ss_pred HhhccCCCCceeeeecCCCc-eEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC
Q 001352 329 QTLIEGSSSPMSMDFHPVQH-TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 407 (1093)
Q Consensus 329 ~~l~~h~~~V~~~~~spdg~-~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~ 407 (1093)
....-|.+.|++++|+|... .++|+|...|+|-+||+.+.+...... ..+..|.++|.++.|+|
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v---------------~~f~~hs~~Vs~l~F~P 244 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV---------------YLFTPHSGPVSGLKFSP 244 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce---------------EEeccCCccccceEecC
Confidence 34456888999999999876 789999999999999997544333211 22778999999999999
Q ss_pred -CCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCce-eEEeecC
Q 001352 408 -DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYSFEGH 485 (1093)
Q Consensus 408 -dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~-~~~~~~h 485 (1093)
+-..+++.|.||+|++-|++++.. .....+......+..+.|+.+.. .++.+..=|...+||.+++.. ...+.-|
T Consensus 245 ~n~s~i~ssSyDGtiR~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~~lh 321 (498)
T KOG4328|consen 245 ANTSQIYSSSYDGTIRLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENLRLH 321 (498)
T ss_pred CChhheeeeccCceeeeeeecchhh-HHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhhhhh
Confidence 456888999999999999997642 22223333455678889998887 677888788999999998765 5566779
Q ss_pred CCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCce----EEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEE
Q 001352 486 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR----VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 561 (1093)
Q Consensus 486 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~----~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iw 561 (1093)
...|++++++|... .++++++.|++.+|||++..... .....|...|.+..|||.+-.|++.+. +..|++|
T Consensus 322 ~kKI~sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~----D~~IRv~ 396 (498)
T KOG4328|consen 322 KKKITSVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ----DNEIRVF 396 (498)
T ss_pred hcccceeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc----CCceEEe
Confidence 99999999998754 79999999999999999865433 344567889999999999888888776 6779999
Q ss_pred eCC----CCeeeeeeecccccCC--CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCc-eEEEecC
Q 001352 562 NES----EGAIKRTYQGLQLQHN--SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP-RICFNKN 634 (1093)
Q Consensus 562 d~~----~~~~~~~~~~~~~~~~--~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~v~~s~~ 634 (1093)
|.. .-....++.....+.. ......|.|+.+++++|-.-..|-|+|-..++.+..+...... .|. -..|+|-
T Consensus 397 dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~-tI~~vn~~HP~ 475 (498)
T KOG4328|consen 397 DSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESS-TIPSVNEFHPM 475 (498)
T ss_pred ecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcccc-ccccceeeccc
Confidence 983 2233333322111111 2345689999999999999999999999999988776544332 233 3579997
Q ss_pred CC-EEEEEECCCeEEEEEcCC
Q 001352 635 GT-LLAVIANENRIKILETPE 654 (1093)
Q Consensus 635 ~~-~l~~~~~dg~i~iw~~~~ 654 (1093)
+. +++.++..|.|+||..+.
T Consensus 476 ~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 476 RDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred ccceeccCCccceEEEEecCC
Confidence 77 455555678899887553
No 144
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=8.9e-23 Score=218.31 Aligned_cols=236 Identities=17% Similarity=0.286 Sum_probs=212.5
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352 393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 472 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 472 (1093)
...|...|.|+..-..++.+++|+.|..+-+|.+.....+. .+.+|..+|.++.|+++.. +|++|+.+|+|++||
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~---S~~~hespIeSl~f~~~E~--LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT---SLTGHESPIESLTFDTSER--LLAAGSASGTIKVWD 98 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh---eeeccCCcceeeecCcchh--hhcccccCCceeeee
Confidence 34588899999987788999999999999999987655444 6889999999999999988 899999999999999
Q ss_pred CCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001352 473 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 552 (1093)
Q Consensus 473 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~ 552 (1093)
++.++.++++.+|...+.++.|+|. +.+.++|+.|+.+++||.+..++...+..|...+..+.|+|+|++++.++.
T Consensus 99 leeAk~vrtLtgh~~~~~sv~f~P~--~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e-- 174 (825)
T KOG0267|consen 99 LEEAKIVRTLTGHLLNITSVDFHPY--GEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE-- 174 (825)
T ss_pred hhhhhhhhhhhccccCcceeeeccc--eEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC--
Confidence 9999999999999999999999664 578999999999999999999999999999999999999999999999875
Q ss_pred CCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEe
Q 001352 553 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 632 (1093)
Q Consensus 553 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 632 (1093)
+..+.+||...|+....|.+|. +.+.++.|+|..-.+..|+.|+++++||+++.+.+...... ...|.+.+|+
T Consensus 175 --d~tvki~d~~agk~~~ef~~~e---~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn 247 (825)
T KOG0267|consen 175 --DNTVKIWDLTAGKLSKEFKSHE---GKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--TDGVRSLAFN 247 (825)
T ss_pred --cceeeeeccccccccccccccc---ccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--cCCceeeeec
Confidence 6789999999999999999988 89999999999888888999999999999998888776544 4569999999
Q ss_pred cCCCEEEEEECC
Q 001352 633 KNGTLLAVIANE 644 (1093)
Q Consensus 633 ~~~~~l~~~~~d 644 (1093)
|++..+++|...
T Consensus 248 ~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 248 PDGKIVLSGEQI 259 (825)
T ss_pred CCceeeecCchh
Confidence 999998888664
No 145
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=4.8e-21 Score=200.56 Aligned_cols=323 Identities=13% Similarity=0.170 Sum_probs=237.8
Q ss_pred eeecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEE
Q 001352 391 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 470 (1093)
Q Consensus 391 ~~~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~v 470 (1093)
.++.||++.|.++...|.|.+||+|+.||+|+||.+.+|.+++.. ...+.|.|++|+|.+...+|+.+- ...+.|
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~----~~d~~I~~vaw~P~~~~~vLAvA~-~~~~~i 468 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTV----QFDSEIRSVAWNPLSDLCVLAVAV-GECVLI 468 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEE----eecceeEEEEecCCCCceeEEEEe-cCceEE
Confidence 348899999999999999999999999999999999999988754 234579999999998864455444 444666
Q ss_pred EECCCCceeEEeecCCCCeEEeeecccCCccEEEEE----ecCCeEEEEEcCCCC----ceEEecCCCCceEEEEEccCC
Q 001352 471 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI----SVDGKIKAWLYDSLG----ARVDYDAPGLGCTRMAYSANG 542 (1093)
Q Consensus 471 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~----~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~s~d~ 542 (1093)
-+..=|..+..-.. ...|+++ ..++.+..|.-.... .+.....+...|..+.|+.+|
T Consensus 469 vnp~~G~~~e~~~t---------------~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG 533 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPT---------------KELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG 533 (733)
T ss_pred eCccccchhhhcch---------------hhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC
Confidence 66554532211100 0111111 234566778554222 233555677899999999999
Q ss_pred CEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCC
Q 001352 543 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 622 (1093)
Q Consensus 543 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 622 (1093)
.||++...++ +...|.|..+..+.....|.... +.+.++.|+|...++++++. ..|+|||+....++..+...
T Consensus 534 DYlatV~~~~-~~~~VliHQLSK~~sQ~PF~ksk---G~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg-- 606 (733)
T KOG0650|consen 534 DYLATVMPDS-GNKSVLIHQLSKRKSQSPFRKSK---GLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTG-- 606 (733)
T ss_pred ceEEEeccCC-CcceEEEEecccccccCchhhcC---CceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcC--
Confidence 9999887644 36678899988776665554444 78999999999999998875 56999999987777665433
Q ss_pred CCCCceEEEecCCCEEEEEECCCeEEEEEcCCC-ceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCcc
Q 001352 623 LPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKP 701 (1093)
Q Consensus 623 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~ 701 (1093)
...|..++.+|.|..|++++.|+.+..+|+.-. +..+.++-|...+++++|+ +.-.+
T Consensus 607 ~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H----------------------~ryPL 664 (733)
T KOG0650|consen 607 SKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFH----------------------KRYPL 664 (733)
T ss_pred CeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhc----------------------cccce
Confidence 346889999999999999999999999999854 6788899999999999987 44556
Q ss_pred ceeecccccceecceeeccCccccccccCc---ccccc----ceEEEEeecCCceEEEeeccceeEEe
Q 001352 702 EISVEAENKSEVEKPLFARPSECQSLLLPS---KVKAN----KISRLTYNNGGQAIFALASNGVHLMW 762 (1093)
Q Consensus 702 l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~---~~~~~----~i~~l~~s~~g~~l~~~~~dg~v~vw 762 (1093)
+++++.||++.++.-..........+..|. .+|.. .|..+.|+|...+|++++.||++++|
T Consensus 665 fas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 665 FASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 778888888887763322222111111111 23433 38888999999999999999999998
No 146
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.87 E-value=3.3e-20 Score=177.53 Aligned_cols=305 Identities=14% Similarity=0.160 Sum_probs=216.9
Q ss_pred cccceEEEEeec-CCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEc
Q 001352 734 KANKISRLTYNN-GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS 812 (1093)
Q Consensus 734 ~~~~i~~l~~s~-~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 812 (1093)
|.+.|+++.+.+ .|+++++++.||.+.+||++............ ...|+... ....+|...|..+.|-
T Consensus 42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~----------k~~c~v~~-~h~~~Hky~iss~~Wy 110 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIA----------KHKCIVAK-QHENGHKYAISSAIWY 110 (397)
T ss_pred CCCccceeeeccccceEEeecCCCccEEEEEeccccchhhcccee----------heeeeccc-cCCccceeeeeeeEEe
Confidence 778899998876 58999999999999999998654211111100 01111111 1122588899999988
Q ss_pred cCC-CEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCC--CCEEEEEeCCCeEEEEEcCCcceeeecccccC
Q 001352 813 KND-AYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHD--NNVIAIGMDDSTILIYNARSSEVISKLEGHSK 888 (1093)
Q Consensus 813 ~dg-~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d--~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~ 888 (1093)
|-. ..+.+++ |.+++|||..+.+....|+ -++.|.+-++||-. -.++|+|..|-.|++-|+.+|.....+.||.+
T Consensus 111 P~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~ 189 (397)
T KOG4283|consen 111 PIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD 189 (397)
T ss_pred eecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC
Confidence 844 4444444 8999999999998888876 55677777777721 24888999999999999999999999999999
Q ss_pred CeEEEEEeCCCCE-EEEEeCCCcEEEEeCCCCce--ee-----eeeeecCCCcccCCCCceEEEEccCCCEEEE-EeCCe
Q 001352 889 RVTGLVFSDALNI-LVSSGGDAQIFVWDVDGWGI--QT-----CRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETH 959 (1093)
Q Consensus 889 ~V~~l~~s~dg~~-l~s~s~dg~i~iwd~~~~~~--~~-----~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~ 959 (1093)
.|.++.|||...+ |++|+.||.|++||+..... .. .+..+.........+.+..++|+.||.++++ +.|..
T Consensus 190 ~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r 269 (397)
T KOG4283|consen 190 GVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDR 269 (397)
T ss_pred ceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccc
Confidence 9999999998766 78999999999999975310 00 0011111112223357999999999999998 89999
Q ss_pred EEEEEcCCcceeeeeecC--C---CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCccce
Q 001352 960 LAIYEAEELTCLKQWFPI--S---SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYP 1034 (1093)
Q Consensus 960 i~vwd~~~~~~~~~~~~~--h---~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1034 (1093)
+++|+..+|+.-..-+.. | .+.-..+. +.+...++---.++.+.++++-.|+.++++.. |.. ..
T Consensus 270 ~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~--------h~k--~i 338 (397)
T KOG4283|consen 270 IRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLST--------HLK--RI 338 (397)
T ss_pred eEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeec--------ccc--ee
Confidence 999999988643321111 1 11111233 44555555555678899999999999888872 222 23
Q ss_pred eEEEeCCCCCCEEEEEeCCCcEEEEecC
Q 001352 1035 HAIAAHPLKPTQFAVGLTNGEVYVIEPN 1062 (1093)
Q Consensus 1035 ~~~~~~p~d~~~l~~~~~dg~v~~w~~~ 1062 (1093)
.|.+|-| +=+...+|..|+.+..|-+.
T Consensus 339 ~c~~~~~-~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 339 NCAAYRP-DFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred eEEeecC-chhhhhccccCCcccccccc
Confidence 4667777 45779999999999999873
No 147
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=8.4e-21 Score=205.14 Aligned_cols=242 Identities=17% Similarity=0.240 Sum_probs=195.6
Q ss_pred EEEeec-CCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCC-CE
Q 001352 740 RLTYNN-GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND-AY 817 (1093)
Q Consensus 740 ~l~~s~-~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg-~~ 817 (1093)
.+.|.. +.++|++++.+|.|.+||+..... ...+.. +. +|...+.++.|++-. .+
T Consensus 92 DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r-------------------nk~l~~--f~--EH~Rs~~~ldfh~tep~i 148 (839)
T KOG0269|consen 92 DVKWGQLYSNLIATCSTNGVISVWDLNKSIR-------------------NKLLTV--FN--EHERSANKLDFHSTEPNI 148 (839)
T ss_pred hcccccchhhhheeecCCCcEEEEecCcccc-------------------chhhhH--hh--hhccceeeeeeccCCccE
Confidence 344442 456788888899999999875210 000111 11 399999999999865 56
Q ss_pred EEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc-ceeeecccccCCeEEEEE
Q 001352 818 LFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVISKLEGHSKRVTGLVF 895 (1093)
Q Consensus 818 la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~-~~~~~l~~h~~~V~~l~~ 895 (1093)
|++|+ ||+|++||+...+...++.+....|+.+.|+|..+..++++.+.|.+++||++.. ++..++.+|.++|.|+.|
T Consensus 149 liSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nw 228 (839)
T KOG0269|consen 149 LISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNW 228 (839)
T ss_pred EEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEee
Confidence 67777 8999999999999999999888899999999988899999999999999999864 567889999999999999
Q ss_pred eCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE----EeCCeEEEEEcCCccee
Q 001352 896 SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL----VHETHLAIYEAEELTCL 971 (1093)
Q Consensus 896 s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~----~~d~~i~vwd~~~~~~~ 971 (1093)
+|++.+|||||.|++|+|||..+.+......+.+. .++..+.|-|+..+.++ +.|..|+|||+...-..
T Consensus 229 hPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTi-------apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP 301 (839)
T KOG0269|consen 229 HPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTI-------APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIP 301 (839)
T ss_pred cCCCceeeecCCCccEEEEeccCCCccceeEEeec-------ceeeeeeeccCccchhhhhhccccceEEEEeecccccc
Confidence 99999999999999999999998765554444443 26899999999887554 36788999999988777
Q ss_pred eeeecCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcCCC
Q 001352 972 KQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSIHEASNL 1011 (1093)
Q Consensus 972 ~~~~~~h~~~v~~~~fs~-dg~~l~t~~~dg~v~vwd~~~~ 1011 (1093)
...+..|...++.++|-. |-..|.+++.||+|..-.++++
T Consensus 302 ~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 302 YATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred ceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 777888999999999965 5667889999998876655544
No 148
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.86 E-value=7.7e-20 Score=183.47 Aligned_cols=306 Identities=15% Similarity=0.168 Sum_probs=217.7
Q ss_pred cCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEE
Q 001352 333 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 412 (1093)
Q Consensus 333 ~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~l 412 (1093)
.|+ +|..+.|.++....+|||+.|..|+||.++.+..-..- ....-...+..|...|+++.|+|+|..|
T Consensus 12 ~~~-pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~----------~~V~y~s~Ls~H~~aVN~vRf~p~gelL 80 (434)
T KOG1009|consen 12 DHE-PVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD----------MKVEYLSSLSRHTRAVNVVRFSPDGELL 80 (434)
T ss_pred CCC-ceEEEEeccCcccceecccCccceeeeeeeecCCCCCc----------eeEEEeecccCCcceeEEEEEcCCcCee
Confidence 455 99999999988746999999999999999765433210 0000112388999999999999999999
Q ss_pred EEEEcCCEEEEEEcc--------C-----CCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCcee
Q 001352 413 GVAYSKHIVQLYAYH--------G-----GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 479 (1093)
Q Consensus 413 as~~~d~~i~iwd~~--------~-----~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~ 479 (1093)
|+|+++|.|.+|... + .+.......+.+|...|..++|+||+. ++++++.|.++++||+..|..+
T Consensus 81 ASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G~l~ 158 (434)
T KOG1009|consen 81 ASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAGQLL 158 (434)
T ss_pred eecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccceeE
Confidence 999999999999877 3 122223446789999999999999999 8999999999999999999999
Q ss_pred EEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEec-------------------CCC----CceEEE
Q 001352 480 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-------------------APG----LGCTRM 536 (1093)
Q Consensus 480 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-------------------~~~----~~v~~~ 536 (1093)
..+..|...|..++|.|. ++++++-+.|...+.+.+.......... .|. .-...+
T Consensus 159 ~~~~dh~~yvqgvawDpl--~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRl 236 (434)
T KOG1009|consen 159 AILDDHEHYVQGVAWDPL--NQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRL 236 (434)
T ss_pred eeccccccccceeecchh--hhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhc
Confidence 999999999999999664 4788888888876666654433222111 001 124568
Q ss_pred EEccCCCEEEEEecCCC-----CceeEEEEeCCC-CeeeeeeecccccCCCeEEEEEcCC-----------------CCE
Q 001352 537 AYSANGRRLFSCGTSKE-----GESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTA-----------------KDQ 593 (1093)
Q Consensus 537 ~~s~d~~~l~~~~~~~~-----~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~v~~~~~-----------------~~~ 593 (1093)
+|+|||..+++....-+ ..+..++++-.. .++...+.+.. .+...+.|+|- -+.
T Consensus 237 sfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~---k~~lavr~~pVy~elrp~~~~~~~~~lpyrl 313 (434)
T KOG1009|consen 237 SFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPK---KPALAVRFSPVYYELRPLSSEKFLFVLPYRL 313 (434)
T ss_pred ccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCC---cceEEEEeeeeEEEeccccccccccccccce
Confidence 89999999987543111 022344454321 12233333332 44555555441 122
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCce
Q 001352 594 ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS 657 (1093)
Q Consensus 594 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 657 (1093)
+++......|+|||.++-.++.....- +...++.++|++||..+++.+.||...+...+..+.
T Consensus 314 vfaiAt~~svyvydtq~~~P~~~v~ni-hy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 314 VFAIATKNSVYVYDTQTLEPLAVVDNI-HYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred EEEEeecceEEEeccccccceEEEeee-eeeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence 333334567999999998887766432 245689999999999999999999988877765533
No 149
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=1.2e-21 Score=209.84 Aligned_cols=239 Identities=11% Similarity=0.205 Sum_probs=212.9
Q ss_pred HhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC
Q 001352 329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 408 (1093)
Q Consensus 329 ~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d 408 (1093)
+.+..|...|.|+..-..++ ++++|+.|..+-+|.+..-..+.. +.+|+.+|.++.|+++
T Consensus 22 ~~~~~hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~S-------------------~~~hespIeSl~f~~~ 81 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAITS-------------------LTGHESPIESLTFDTS 81 (825)
T ss_pred hhhhhhhhhhceeeeeccce-eeccCCCceeeccccccCCchhhe-------------------eeccCCcceeeecCcc
Confidence 44556888899998866676 799999999999999876544432 7789999999999999
Q ss_pred CCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCC
Q 001352 409 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 488 (1093)
Q Consensus 409 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~ 488 (1093)
..+|++|+.+|+|++||++.++.++ ++.+|...+.++.|+|-+. +.++|+.|+.+++||++...|.+.+.+|...
T Consensus 82 E~LlaagsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~v 156 (825)
T KOG0267|consen 82 ERLLAAGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRV 156 (825)
T ss_pred hhhhcccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcce
Confidence 9999999999999999999988777 7889999999999999999 7899999999999999999999999999999
Q ss_pred eEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCee
Q 001352 489 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 568 (1093)
Q Consensus 489 v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~ 568 (1093)
|..+.| .++|.++++++.|..+++||+..++....+..|...+..+.|+|..-+++.|+. +..+++||+++.+.
T Consensus 157 v~~l~l--sP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~----d~tv~f~dletfe~ 230 (825)
T KOG0267|consen 157 VDVLRL--SPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSS----DRTVRFWDLETFEV 230 (825)
T ss_pred eEEEee--cCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCC----CceeeeeccceeEE
Confidence 999999 557899999999999999999999999999999999999999999988988876 77899999999888
Q ss_pred eeeeecccccCCCeEEEEEcCCCCEEEEEeCCC
Q 001352 569 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH 601 (1093)
Q Consensus 569 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg 601 (1093)
+....... ..|.+..|+|++..+++|....
T Consensus 231 I~s~~~~~---~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 231 ISSGKPET---DGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred eeccCCcc---CCceeeeecCCceeeecCchhh
Confidence 87776655 7899999999998888876543
No 150
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.85 E-value=5.3e-20 Score=194.63 Aligned_cols=288 Identities=17% Similarity=0.211 Sum_probs=206.0
Q ss_pred CCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcCCEEEEE
Q 001352 345 PVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLY 424 (1093)
Q Consensus 345 pdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d~~i~iw 424 (1093)
|+.+.+||.+..||.|.++|.....-. ++.+. | .....|.+.|..++|-|....|++++.|.++++|
T Consensus 61 ~n~eHiLavadE~G~i~l~dt~~~~fr---------~ee~~--l--k~~~aH~nAifDl~wapge~~lVsasGDsT~r~W 127 (720)
T KOG0321|consen 61 PNKEHILAVADEDGGIILFDTKSIVFR---------LEERQ--L--KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPW 127 (720)
T ss_pred CCccceEEEecCCCceeeecchhhhcc---------hhhhh--h--cccccccceeEeeccCCCceeEEEccCCceeeee
Confidence 344568999999999999998764322 00110 1 1144699999999999977889999999999999
Q ss_pred EccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCc--------------------e------
Q 001352 425 AYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS--------------------R------ 478 (1093)
Q Consensus 425 d~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~--------------------~------ 478 (1093)
|++++++.... .+.||.+.|.+++|.+++.. .+++|+.||.|.|||+.-.. .
T Consensus 128 dvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~-vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~k 205 (720)
T KOG0321|consen 128 DVKTSRLVGGR-LNLGHTGSVKSECFMPTNPA-VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKK 205 (720)
T ss_pred eeccceeecce-eecccccccchhhhccCCCc-ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhc
Confidence 99998876643 46799999999999999886 89999999999999985221 0
Q ss_pred -eEEeecCCCCeEE---eeecccCCccEEEEEec-CCeEEEEEcCCCCceEE--------ecCC---CCceEEEEEccCC
Q 001352 479 -TYSFEGHGAPVYS---LCPHAKENIHFIFSISV-DGKIKAWLYDSLGARVD--------YDAP---GLGCTRMAYSANG 542 (1093)
Q Consensus 479 -~~~~~~h~~~v~~---~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~--------~~~~---~~~v~~~~~s~d~ 542 (1093)
+.....+...|.+ +.+ ..|...|++++. |+.|+|||++....... +..+ ...+.++.....|
T Consensus 206 r~~k~kA~s~ti~ssvTvv~--fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG 283 (720)
T KOG0321|consen 206 RIRKWKAASNTIFSSVTVVL--FKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG 283 (720)
T ss_pred cccccccccCceeeeeEEEE--EeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCC
Confidence 1111234444443 222 235568888887 99999999987554332 2222 2357788888888
Q ss_pred CEEEEEecCCCCceeEEEEeCCCC--eeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecC
Q 001352 543 RRLFSCGTSKEGESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 620 (1093)
Q Consensus 543 ~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 620 (1093)
.+|++... |+.|+.||+.+- .++..+.++......+ .-..+|++.++++|+.|...++|.+.+.+.-..+- .
T Consensus 284 t~L~AsCt----D~sIy~ynm~s~s~sP~~~~sg~~~~sf~v-ks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l-~ 357 (720)
T KOG0321|consen 284 TYLFASCT----DNSIYFYNMRSLSISPVAEFSGKLNSSFYV-KSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL-L 357 (720)
T ss_pred CeEEEEec----CCcEEEEeccccCcCchhhccCcccceeee-eeecCCCCceEeccCCCcceeeeeecCccCChhhh-h
Confidence 88877665 667999998754 3344455544111222 23578999999999999999999998765433322 1
Q ss_pred CCCCCCceEEEec-CCCEEEEEECCCeEEEEEcCCC
Q 001352 621 GGLPENPRICFNK-NGTLLAVIANENRIKILETPES 655 (1093)
Q Consensus 621 ~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iw~~~~~ 655 (1093)
++...|.+++|.| .-.-++++++|..+++|++..+
T Consensus 358 Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 358 GHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred CcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 3345689999987 3344666799999999999654
No 151
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=2.4e-20 Score=201.72 Aligned_cols=285 Identities=16% Similarity=0.265 Sum_probs=218.1
Q ss_pred CCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccc-eEEeccc---cccEEEEEeeCCCCcEEEEEEcCCCcEEEEEC
Q 001352 398 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQ-QLEIDAH---VGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 473 (1093)
Q Consensus 398 ~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~-~~~~~~h---~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~ 473 (1093)
....+|+.+++-..|+.++.. .++||.+........ ....++. ...+..+.|..-..+ +|+|++..|.|.+||+
T Consensus 40 ~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~N-lIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSN-LIATCSTNGVISVWDL 117 (839)
T ss_pred cccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhh-hheeecCCCcEEEEec
Confidence 456778888998888888655 478887765432111 1111111 124566788755444 8999999999999999
Q ss_pred CC---CceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccC-CCEEEEEe
Q 001352 474 VT---GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN-GRRLFSCG 549 (1093)
Q Consensus 474 ~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~~~~ 549 (1093)
.. .+.+..|..|...++++.|++... .+|++|+.||+|++||++......++......|+.+.|+|. +..++++.
T Consensus 118 nk~~rnk~l~~f~EH~Rs~~~ldfh~tep-~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~ 196 (839)
T KOG0269|consen 118 NKSIRNKLLTVFNEHERSANKLDFHSTEP-NILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIH 196 (839)
T ss_pred CccccchhhhHhhhhccceeeeeeccCCc-cEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEec
Confidence 87 567778899999999999987644 69999999999999999999999988888889999999994 56666665
Q ss_pred cCCCCceeEEEEeCCCC-eeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCce
Q 001352 550 TSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 628 (1093)
Q Consensus 550 ~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 628 (1093)
. .|.+++||++.. ++...+..|. ++|.++.|+|++.+|++||.|+.|+|||..+++.......+. ..++..
T Consensus 197 d----sG~lqlWDlRqp~r~~~k~~AH~---GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInT-iapv~r 268 (839)
T KOG0269|consen 197 D----SGYLQLWDLRQPDRCEKKLTAHN---GPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINT-IAPVGR 268 (839)
T ss_pred C----CceEEEeeccCchhHHHHhhccc---CceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEee-cceeee
Confidence 4 678999999864 4556677777 999999999999999999999999999998765543333322 356899
Q ss_pred EEEecCCCE-EEEEE--CCCeEEEEEcCCC-ceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCcccee
Q 001352 629 ICFNKNGTL-LAVIA--NENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 704 (1093)
Q Consensus 629 v~~s~~~~~-l~~~~--~dg~i~iw~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s 704 (1093)
|.|-|+.++ |++++ .|..|+|||+... -+...+..|...++.++|. +.|...+.+
T Consensus 269 VkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~---------------------~~d~~~l~s 327 (839)
T KOG0269|consen 269 VKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWD---------------------SGDRINLWS 327 (839)
T ss_pred eeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceecc---------------------CCCceeeEe
Confidence 999997654 55554 3789999999865 4556777888888888887 345566778
Q ss_pred ecccccceec
Q 001352 705 VEAENKSEVE 714 (1093)
Q Consensus 705 ~~~d~~i~~w 714 (1093)
++.|+++..-
T Consensus 328 ~sKD~tv~qh 337 (839)
T KOG0269|consen 328 CSKDGTVLQH 337 (839)
T ss_pred ecCccHHHHh
Confidence 8888876543
No 152
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=3.2e-19 Score=172.42 Aligned_cols=268 Identities=13% Similarity=0.203 Sum_probs=195.6
Q ss_pred ccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC--CC
Q 001352 332 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DG 409 (1093)
Q Consensus 332 ~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~--dg 409 (1093)
.+|.+-|.|+.|.+-|++ +|+|+.|++|+|||.+...-....+ .-.+.|.+.|..|.|.+ -|
T Consensus 10 s~h~DlihdVs~D~~GRR-mAtCSsDq~vkI~d~~~~s~~W~~T---------------s~Wrah~~Si~rV~WAhPEfG 73 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRR-MATCSSDQTVKIWDSTSDSGTWSCT---------------SSWRAHDGSIWRVVWAHPEFG 73 (361)
T ss_pred cCCcceeeeeeecccCce-eeeccCCCcEEEEeccCCCCceEEe---------------eeEEecCCcEEEEEecCcccc
Confidence 379999999999999997 8999999999999975443222111 11556999999999976 49
Q ss_pred CEEEEEEcCCEEEEEEccC------CCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCc------
Q 001352 410 SLLGVAYSKHIVQLYAYHG------GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS------ 477 (1093)
Q Consensus 410 ~~las~~~d~~i~iwd~~~------~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~------ 477 (1093)
+.+|+++.|+++.||.-.. +..-....++......|+++.|.|....+.+++++.||.+|||+....-
T Consensus 74 qvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~ 153 (361)
T KOG2445|consen 74 QVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWT 153 (361)
T ss_pred ceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccch
Confidence 9999999999999998631 1112223356667789999999999877799999999999999865432
Q ss_pred eeEEee-------cCCCCeEEeeecccCC-ccEEEEEecC-----CeEEEEEcCCCCce----EEecCCCCceEEEEEcc
Q 001352 478 RTYSFE-------GHGAPVYSLCPHAKEN-IHFIFSISVD-----GKIKAWLYDSLGAR----VDYDAPGLGCTRMAYSA 540 (1093)
Q Consensus 478 ~~~~~~-------~h~~~v~~~~~~~~~~-~~~l~s~~~d-----g~i~vwd~~~~~~~----~~~~~~~~~v~~~~~s~ 540 (1093)
..+.++ .+..+..|+.|+++.- ..+|+.|+.+ +.++||........ ..+..+..+|+.++|.|
T Consensus 154 Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAP 233 (361)
T KOG2445|consen 154 LQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAP 233 (361)
T ss_pred hhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecc
Confidence 223333 3666778888876533 2467777665 47899987765532 35678888999999999
Q ss_pred CC----CEEEEEecCCCCceeEEEEeCCCCe-----------------eeeeeecccccCCCeEEEEEcCCCCEEEEEeC
Q 001352 541 NG----RRLFSCGTSKEGESFLVEWNESEGA-----------------IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD 599 (1093)
Q Consensus 541 d~----~~l~~~~~~~~~~~~i~iwd~~~~~-----------------~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~ 599 (1093)
+- ..|++++. +| |+||++.... .+..+..+..|.+.|..+.|+-.|..|.+.|.
T Consensus 234 n~Gr~y~~lAvA~k----Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGd 308 (361)
T KOG2445|consen 234 NIGRSYHLLAVATK----DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGD 308 (361)
T ss_pred ccCCceeeEEEeec----Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCC
Confidence 62 35666654 44 9999887311 12233333444599999999999999999999
Q ss_pred CCcEEEEECCC---CceEEEEecC
Q 001352 600 DHVIKIWDMNK---VQLLTTIDAG 620 (1093)
Q Consensus 600 dg~i~iwd~~~---~~~~~~~~~~ 620 (1093)
||.|++|...- .++...+...
T Consensus 309 DG~VRLWkany~n~~kC~sv~~~e 332 (361)
T KOG2445|consen 309 DGCVRLWKANYNNLWKCTSVLKAE 332 (361)
T ss_pred CceeeehhhhhhhhheeeeEEecc
Confidence 99999997643 3345555544
No 153
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=4.2e-19 Score=171.58 Aligned_cols=256 Identities=13% Similarity=0.176 Sum_probs=190.5
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCC-cccceEEeccccccEEEEEeeCC--CCcEEEEEEcCCCcEE
Q 001352 393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS-DARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIK 469 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~-~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~ 469 (1093)
..+|.+-|.++.|.+-|+++|+|+.|++|+|||.+.+. ........+.|.+.|..+.|.+- |+ .+++++.|+++.
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq--vvA~cS~Drtv~ 86 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ--VVATCSYDRTVS 86 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc--eEEEEecCCcee
Confidence 45799999999999999999999999999999965433 23444467889999999999654 56 899999999999
Q ss_pred EEECCC------C---ceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceE------Eec-------
Q 001352 470 VWDAVT------G---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV------DYD------- 527 (1093)
Q Consensus 470 vwd~~~------~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~------~~~------- 527 (1093)
||.-.. | ....++......|+.++|.|..-|-.+++++.||.+|||+.-...... .+.
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 997411 1 123456677889999999999999999999999999999765432221 111
Q ss_pred CCCCceEEEEEccC---CCEEEEEecC-CCCceeEEEEeCCCC----eeeeeeecccccCCCeEEEEEcCCC----CEEE
Q 001352 528 APGLGCTRMAYSAN---GRRLFSCGTS-KEGESFLVEWNESEG----AIKRTYQGLQLQHNSVSVVHFDTAK----DQIL 595 (1093)
Q Consensus 528 ~~~~~v~~~~~s~d---~~~l~~~~~~-~~~~~~i~iwd~~~~----~~~~~~~~~~~~~~~v~~v~~~~~~----~~l~ 595 (1093)
.+..+..|+.|+|. ..+|++++.+ ....+.++||....+ ..+..+.++. .+|+.++|.|+- ..|+
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~---dpI~di~wAPn~Gr~y~~lA 243 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHT---DPIRDISWAPNIGRSYHLLA 243 (361)
T ss_pred cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCC---CcceeeeeccccCCceeeEE
Confidence 23346788999874 4567777643 112235677765433 2344555555 999999999973 4678
Q ss_pred EEeCCCcEEEEECCCCc-----------------eEEEEe-cCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001352 596 AAGDDHVIKIWDMNKVQ-----------------LLTTID-AGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 654 (1093)
Q Consensus 596 ~~~~dg~i~iwd~~~~~-----------------~~~~~~-~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 654 (1093)
+++.|| |+||++.... .+..+. ..++...|..+.|+-.|..|++.+.||.+++|...-
T Consensus 244 vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 244 VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred EeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 899999 9999987311 112221 334556799999999999999999999999998763
No 154
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=6.6e-20 Score=186.12 Aligned_cols=243 Identities=15% Similarity=0.185 Sum_probs=188.6
Q ss_pred CCEEEEEEcCCEEEEEEccCCCcccceEEe------------------ccccccEEEEEeeCCCCcEEEEEEcCCCcEEE
Q 001352 409 GSLLGVAYSKHIVQLYAYHGGSDARQQLEI------------------DAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 470 (1093)
Q Consensus 409 g~~las~~~d~~i~iwd~~~~~~~~~~~~~------------------~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~v 470 (1093)
|.|+|.|+.|..|.|||+.--..+.+...+ .+|+..|.+++|+..-+. +|++||.|.+|++
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~n-VLaSgsaD~TV~l 270 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRN-VLASGSADKTVKL 270 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccce-eEEecCCCceEEE
Confidence 689999999999999998643333222222 279999999999988777 8999999999999
Q ss_pred EECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEec
Q 001352 471 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 550 (1093)
Q Consensus 471 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 550 (1093)
||+.+|++..++..|...|.++.|++.. ..+|++|+.|++|.+.|.+........-...+.|-.++|.|.....+.++.
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~-p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~t 349 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYE-PSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVST 349 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCC-ceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEec
Confidence 9999999999999999999999999764 579999999999999999853332222223457888999998777666654
Q ss_pred CCCCceeEEEEeCCCC-eeeeeeecccccCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCce
Q 001352 551 SKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 628 (1093)
Q Consensus 551 ~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 628 (1093)
.+|+|+-+|++.. +++.+++.|. ++|.++++++... .+++++.|+.|++|++............-......|
T Consensus 350 ---ddG~v~~~D~R~~~~~vwt~~AHd---~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c 423 (463)
T KOG0270|consen 350 ---DDGTVYYFDIRNPGKPVWTLKAHD---DEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHC 423 (463)
T ss_pred ---CCceEEeeecCCCCCceeEEEecc---CCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceee
Confidence 2788999999875 8888999888 8999999998754 566799999999999876544322221111223456
Q ss_pred EEEecCC-CEEEEEECCCeEEEEEcCCCceee
Q 001352 629 ICFNKNG-TLLAVIANENRIKILETPESNSVD 659 (1093)
Q Consensus 629 v~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~ 659 (1093)
.++.|+- -.++.|+..+.+++||+.+...+.
T Consensus 424 ~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 424 FALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred cccCCCcceEEEecCccceEEEeecccChhHH
Confidence 6777754 467778888889999998775543
No 155
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.84 E-value=1.7e-19 Score=175.88 Aligned_cols=298 Identities=14% Similarity=0.201 Sum_probs=206.3
Q ss_pred cccceEEEEeec----CCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEE
Q 001352 734 KANKISRLTYNN----GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF 809 (1093)
Q Consensus 734 ~~~~i~~l~~s~----~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 809 (1093)
|...|..++|.+ +...+++......+.+|+.+... +.++....... .+......+
T Consensus 37 ~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~--------------------~ir~lq~y~D~-d~~Esfytc 95 (385)
T KOG1034|consen 37 HNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDG--------------------GIRLLQSYADE-DHDESFYTC 95 (385)
T ss_pred CCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCcc--------------------ceeeeeeccCC-CCCcceEEE
Confidence 666788888873 33445555556688888876431 11122221111 366667777
Q ss_pred EEccCC----CEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeec-
Q 001352 810 ALSKND----AYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL- 883 (1093)
Q Consensus 810 ~~s~dg----~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l- 883 (1093)
+++-|- -++|+++ -|.|+|.|..+++....+.+|...|..+.+.|.+.++|++++.|.+|++|++++..++..+
T Consensus 96 sw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG 175 (385)
T KOG1034|consen 96 SWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG 175 (385)
T ss_pred EEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec
Confidence 777543 3566666 5999999999999999999999999999999977889999999999999999999998776
Q ss_pred --ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeee-------------eeecCCCccc-------CCCCce
Q 001352 884 --EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCR-------------SLQTPDGVMT-------LAPSET 941 (1093)
Q Consensus 884 --~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~-------------~~~~~~~~~~-------~~~~v~ 941 (1093)
.||.+.|.++.|+++|.+++|+|.|.+|++|++...+..... .+..+..+.. +...|.
T Consensus 176 G~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVD 255 (385)
T KOG1034|consen 176 GVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVD 255 (385)
T ss_pred ccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHH
Confidence 569999999999999999999999999999999854322100 0111111110 011223
Q ss_pred EEEEccCCCEEEE-EeCCeEEEEEc-CCcceeeee------------ecCCCCCEEEEEEc--cCCCEEEEEeCCCcEEE
Q 001352 942 HIQFHKDQTRFLL-VHETHLAIYEA-EELTCLKQW------------FPISSVPISQATFS--CDCRMVFTSFVDGTLSI 1005 (1093)
Q Consensus 942 ~~~~s~dg~~l~~-~~d~~i~vwd~-~~~~~~~~~------------~~~h~~~v~~~~fs--~dg~~l~t~~~dg~v~v 1005 (1093)
++.|- |.++++ +.++.|..|.. +-++.+... +.-....|+-+.|+ |-+++||.|...|.|.+
T Consensus 256 Cvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~v 333 (385)
T KOG1034|consen 256 CVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYV 333 (385)
T ss_pred HHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEE
Confidence 33322 477777 78889999987 222221111 11125566666665 45789999999999999
Q ss_pred EEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEec
Q 001352 1006 HEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1061 (1093)
Q Consensus 1006 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~ 1061 (1093)
||++..+.... ..+....++..|+ ..+|+. |+..|+..++|++|.-||.
T Consensus 334 wdL~~~ep~~~----ttl~~s~~~~tVR--Q~sfS~-dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 334 WDLDNNEPPKC----TTLTHSKSGSTVR--QTSFSR-DGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred EECCCCCCccC----ceEEeccccceee--eeeecc-cCcEEEEEeCCCcEEEEEe
Confidence 99998876411 1111122344455 456776 6899999999999999986
No 156
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.84 E-value=4.3e-19 Score=173.03 Aligned_cols=295 Identities=15% Similarity=0.263 Sum_probs=213.2
Q ss_pred HhhccCCCCceeeeecC----CCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEE
Q 001352 329 QTLIEGSSSPMSMDFHP----VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 404 (1093)
Q Consensus 329 ~~l~~h~~~V~~~~~sp----dg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 404 (1093)
+.+++|+.+|..++|.+ +...++|+.+. ..+.+|+....-.++ .++...-..|...-..++
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir--------------~lq~y~D~d~~Esfytcs 96 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIR--------------LLQSYADEDHDESFYTCS 96 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCcccee--------------eeeeccCCCCCcceEEEE
Confidence 34568888999999984 33335666544 678899886544221 122222335788888999
Q ss_pred ECCC----CCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeE
Q 001352 405 WSPD----GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 480 (1093)
Q Consensus 405 ~s~d----g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~ 480 (1093)
|+-| .-+||+|+.-|.|+|.|+.++++.. .+.+|...|+.+.|.|+..+ ++++++.|.+|++|++++..++.
T Consensus 97 w~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~~p~~~q-lvls~SkD~svRlwnI~~~~Cv~ 172 (385)
T KOG1034|consen 97 WSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKFHPDRPQ-LVLSASKDHSVRLWNIQTDVCVA 172 (385)
T ss_pred EEecCCCCCeeEEeecceeEEEEEecchhhhcc---ceeccCccchhhhcCCCCCc-EEEEecCCceEEEEeccCCeEEE
Confidence 9875 3489999999999999999987666 67799999999999999877 79999999999999999999998
Q ss_pred Ee---ecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEE------e----------------------cCC
Q 001352 481 SF---EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD------Y----------------------DAP 529 (1093)
Q Consensus 481 ~~---~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~------~----------------------~~~ 529 (1093)
.| .+|.+.|.++.|+. +|.+|++++.|.++++|++...+.... + ..|
T Consensus 173 VfGG~egHrdeVLSvD~~~--~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diH 250 (385)
T KOG1034|consen 173 VFGGVEGHRDEVLSVDFSL--DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIH 250 (385)
T ss_pred EecccccccCcEEEEEEcC--CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccc
Confidence 87 56999999999955 566999999999999999974321110 0 111
Q ss_pred CCceEEEEEccCCCEEEEEecCCCCceeEEEEeC-CCCee-------------eeeeecccccCCCeEEE--EEcCCCCE
Q 001352 530 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE-SEGAI-------------KRTYQGLQLQHNSVSVV--HFDTAKDQ 593 (1093)
Q Consensus 530 ~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~-~~~~~-------------~~~~~~~~~~~~~v~~v--~~~~~~~~ 593 (1093)
...|.|+.|- |+++++-+- ++.|..|.. +-++. +..+.-. ...+.-+ +|.|-.+.
T Consensus 251 rnyVDCvrw~--gd~ilSksc----enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~---~c~iWfirf~~d~~~~~ 321 (385)
T KOG1034|consen 251 RNYVDCVRWF--GDFILSKSC----ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYP---MCDIWFIRFAFDPWQKM 321 (385)
T ss_pred cchHHHHHHH--hhheeeccc----CceEEEEecchhhhhhhccCCCccceeeeeEeccC---ccceEEEEEeecHHHHH
Confidence 1222223222 456665543 557999987 22222 1122211 2344444 45566788
Q ss_pred EEEEeCCCcEEEEECCCCce--EEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcC
Q 001352 594 ILAAGDDHVIKIWDMNKVQL--LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 653 (1093)
Q Consensus 594 l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 653 (1093)
|+.|...|.|++||++.... ..++........|...+|+.||..|+..++|++|.-||..
T Consensus 322 la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 322 LALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred HhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 99999999999999987665 2344444444568999999999999999999999999864
No 157
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.84 E-value=3.7e-19 Score=188.32 Aligned_cols=287 Identities=17% Similarity=0.157 Sum_probs=197.4
Q ss_pred ceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeE
Q 001352 748 QAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVI 826 (1093)
Q Consensus 748 ~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i 826 (1093)
..|+.+..+|.|.+++...... .+.... +... ..|...|..+.+.|....|++++ |.++
T Consensus 65 HiLavadE~G~i~l~dt~~~~f---------------r~ee~~-lk~~----~aH~nAifDl~wapge~~lVsasGDsT~ 124 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKSIVF---------------RLEERQ-LKKP----LAHKNAIFDLKWAPGESLLVSASGDSTI 124 (720)
T ss_pred ceEEEecCCCceeeecchhhhc---------------chhhhh-hccc----ccccceeEeeccCCCceeEEEccCCcee
Confidence 4466667789999988654322 111100 1111 14999999999999667777776 7899
Q ss_pred EEEEccCceeEEE--ECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcc--------------------------
Q 001352 827 SLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-------------------------- 878 (1093)
Q Consensus 827 ~iwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~-------------------------- 878 (1093)
++||+++.+++.. +.+|...+.+++|.|.+...+++|+.||.|.|||+.-..
T Consensus 125 r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~ 204 (720)
T KOG0321|consen 125 RPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLK 204 (720)
T ss_pred eeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhh
Confidence 9999999988877 889999999999999888999999999999999985321
Q ss_pred -eeeecccccCCeEE---EEEeCCCCEEEEEeC-CCcEEEEeCCCCceeeee-eeec--CCCcccCCCCceEEEEccCCC
Q 001352 879 -VISKLEGHSKRVTG---LVFSDALNILVSSGG-DAQIFVWDVDGWGIQTCR-SLQT--PDGVMTLAPSETHIQFHKDQT 950 (1093)
Q Consensus 879 -~~~~l~~h~~~V~~---l~~s~dg~~l~s~s~-dg~i~iwd~~~~~~~~~~-~~~~--~~~~~~~~~~v~~~~~s~dg~ 950 (1093)
.+....+|...|.+ +.+..|...||++|. |+.|+|||+......... .... ...+......++++.....|.
T Consensus 205 kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt 284 (720)
T KOG0321|consen 205 KRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT 284 (720)
T ss_pred ccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC
Confidence 01222345566666 666778899999998 999999999875422211 1111 111111123567777777788
Q ss_pred EEEE-EeCCeEEEEEcCCcceee-eeecCC--CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCC
Q 001352 951 RFLL-VHETHLAIYEAEELTCLK-QWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPT 1026 (1093)
Q Consensus 951 ~l~~-~~d~~i~vwd~~~~~~~~-~~~~~h--~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 1026 (1093)
+|.+ +.|+.|++|++.+...-- ..+.++ ..--..-..|||+.+|++|+.|..+++|.+.+-+.--.+. +.
T Consensus 285 ~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l----~G-- 358 (720)
T KOG0321|consen 285 YLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL----LG-- 358 (720)
T ss_pred eEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh----hC--
Confidence 8887 799999999997643211 112233 1111223469999999999999999999998876542221 11
Q ss_pred CCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecCC
Q 001352 1027 TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1063 (1093)
Q Consensus 1027 ~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~ 1063 (1093)
|.-+|. +++|.|.+-.-++|+++|.++++|++..
T Consensus 359 -ht~eVt--~V~w~pS~~t~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 359 -HTREVT--TVRWLPSATTPVATCSDDFRVKIWRLSN 392 (720)
T ss_pred -cceEEE--EEeeccccCCCceeeccCcceEEEeccC
Confidence 233344 4555554445688889999999999943
No 158
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=1.4e-16 Score=185.47 Aligned_cols=373 Identities=25% Similarity=0.420 Sum_probs=277.2
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEecccc-ccEEEEEe-eCCCCcEEEEEEcCCCcEEE
Q 001352 393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAF-SAPCKQISVITCGDDKTIKV 470 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~-s~d~~~l~l~s~~~d~~i~v 470 (1093)
...|...|.++.|.+++..++.++.|+.+.+|+...+. .....+.++. ..+..+.+ ++++....+..+..|+.+.+
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 138 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE--KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL 138 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc--eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEE
Confidence 45689999999999999999999999999999999875 1222444533 36777777 77776323333455999999
Q ss_pred EECCC-CceeEEeecCCCCeEEeeecccCCccEEEEEec-CCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001352 471 WDAVT-GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 548 (1093)
Q Consensus 471 wd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 548 (1093)
||... ......+..|...|..+++++. +..+++++. |+.+++|+.........+..+...+.+++|+|++..++.+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 216 (466)
T COG2319 139 WDLSTPGKLIRTLEGHSESVTSLAFSPD--GKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIAS 216 (466)
T ss_pred EEecCCCeEEEEEecCcccEEEEEECCC--CCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEE
Confidence 99988 7888889999999999999654 457888875 9999999999878888888889999999999999844443
Q ss_pred -ecCCCCceeEEEEeCCCCeeee-eeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-EEEEecCCCCCC
Q 001352 549 -GTSKEGESFLVEWNESEGAIKR-TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL-LTTIDAGGGLPE 625 (1093)
Q Consensus 549 -~~~~~~~~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~ 625 (1093)
+. ++.|++||...+.... .+.+|. ... ...|+|++..+++++.|+.+++|+...... ...+. .+...
T Consensus 217 ~~~----d~~i~~wd~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~--~~~~~ 286 (466)
T COG2319 217 GSS----DGTIRLWDLSTGKLLRSTLSGHS---DSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLS--GHSSS 286 (466)
T ss_pred ecC----CCcEEEEECCCCcEEeeecCCCC---cce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEe--cCCcc
Confidence 43 6678899988888777 577766 443 338999998889999999999999987665 44442 23456
Q ss_pred CceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceee
Q 001352 626 NPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISV 705 (1093)
Q Consensus 626 v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~ 705 (1093)
+.++.|+|++..+++++.|+.+.+|+...........
T Consensus 287 v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~------------------------------------------- 323 (466)
T COG2319 287 VLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT------------------------------------------- 323 (466)
T ss_pred EEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee-------------------------------------------
Confidence 8889999988888888888889999766442221110
Q ss_pred cccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccC
Q 001352 706 EAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQ 785 (1093)
Q Consensus 706 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~ 785 (1093)
..
T Consensus 324 -------------------------~~----------------------------------------------------- 325 (466)
T COG2319 324 -------------------------LK----------------------------------------------------- 325 (466)
T ss_pred -------------------------ec-----------------------------------------------------
Confidence 00
Q ss_pred CCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEE--eCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEE-
Q 001352 786 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA--SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI- 862 (1093)
Q Consensus 786 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~--~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~las- 862 (1093)
.|...+..+.+.+++..++.+ .++.+.+|+............. ..+..+.+++ + ..++.
T Consensus 326 ---------------~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~-~~~~~~ 387 (466)
T COG2319 326 ---------------GHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSP-D-GRVVSS 387 (466)
T ss_pred ---------------ccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCC-ceEEEEEECC-C-CCEEEE
Confidence 022234444442222333333 2466777777766522222222 2288899998 7 55554
Q ss_pred EeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 001352 863 GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 918 (1093)
Q Consensus 863 g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~ 918 (1093)
+..++.+.+|+............+...+....+++++..+++++.++.+++|+...
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 388 GSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred ecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 88999999999998887776665547799999999999999999999999999987
No 159
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.83 E-value=4.9e-19 Score=181.29 Aligned_cols=289 Identities=13% Similarity=0.170 Sum_probs=219.1
Q ss_pred CcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCC-EEEEEEcCCEEEEEEccCCCc-ccce
Q 001352 358 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSD-ARQQ 435 (1093)
Q Consensus 358 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~-~las~~~d~~i~iwd~~~~~~-~~~~ 435 (1093)
..++|||+...+..-.+. -....-.+.++.|+.... .+|+.+.|..|++|.-..... +...
T Consensus 12 d~~kl~D~s~~~~~~~~~-----------------~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~ 74 (673)
T KOG4378|consen 12 DKTKLSDFSDLETKSEYV-----------------HQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRV 74 (673)
T ss_pred CceEEeecccccCccccc-----------------cCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCcccee
Confidence 579999997655443211 111223489999998764 233446777899997654311 1111
Q ss_pred EEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEE
Q 001352 436 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 515 (1093)
Q Consensus 436 ~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vw 515 (1093)
....+. .-.|++...... ++++||..+.|+|||++...+.+.+++|...|+++.+.. ...+|++++..|.|.+.
T Consensus 75 ~k~~gd--~~~Cv~~~s~S~--y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~--~DeyiAsvs~gGdiiih 148 (673)
T KOG4378|consen 75 RKLTGD--NAFCVACASQSL--YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN--TDEYIASVSDGGDIIIH 148 (673)
T ss_pred eccccc--hHHHHhhhhcce--eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC--CcceeEEeccCCcEEEE
Confidence 122222 334444444444 899999999999999998888889999999999999865 34799999999999999
Q ss_pred EcCCCCceEEecCCC-CceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCE-
Q 001352 516 LYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ- 593 (1093)
Q Consensus 516 d~~~~~~~~~~~~~~-~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~- 593 (1093)
.+.++.....+.... ..+.-+.|+|..+.+++...+ +|.|.+||+....++..+.. .|..+...++|+|....
T Consensus 149 ~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd---~G~VtlwDv~g~sp~~~~~~--~HsAP~~gicfspsne~l 223 (673)
T KOG4378|consen 149 GTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASD---KGAVTLWDVQGMSPIFHASE--AHSAPCRGICFSPSNEAL 223 (673)
T ss_pred ecccCccccceecCCCCeEEEeecccccceeeEeecc---CCeEEEEeccCCCcccchhh--hccCCcCcceecCCccce
Confidence 999888777777664 456689999999887765542 77899999988877655543 23588999999998654
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCC-ceeeecccccccceeee
Q 001352 594 ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLS 672 (1093)
Q Consensus 594 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~i~~~~ 672 (1093)
|++.+.|..|.+||....+....+.... +...++|+++|.+|+.|...|.|..||++.. .++.....|...|++++
T Consensus 224 ~vsVG~Dkki~~yD~~s~~s~~~l~y~~---Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~va 300 (673)
T KOG4378|consen 224 LVSVGYDKKINIYDIRSQASTDRLTYSH---PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVA 300 (673)
T ss_pred EEEecccceEEEeecccccccceeeecC---CcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEE
Confidence 5668999999999999888777776543 4789999999999999999999999999855 67888899999999999
Q ss_pred ecCCC
Q 001352 673 VNPIS 677 (1093)
Q Consensus 673 ~~~~~ 677 (1093)
|.+..
T Consensus 301 fq~s~ 305 (673)
T KOG4378|consen 301 FQPSP 305 (673)
T ss_pred eeecc
Confidence 98765
No 160
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=7.5e-17 Score=187.64 Aligned_cols=371 Identities=23% Similarity=0.347 Sum_probs=273.9
Q ss_pred HhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCc-eeEEeeeeeeecccccceeeeeeecCCC-CCeEEEEE-
Q 001352 329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ-KLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVW- 405 (1093)
Q Consensus 329 ~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~v~~- 405 (1093)
..+.+|...+.++.|.+.+. .++.++.|+.+.+|+...+. .... +.++. ..+..+.+
T Consensus 59 ~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~ 118 (466)
T COG2319 59 LLLRGHEDSITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEKLIKS-------------------LEGLHDSSVSKLALS 118 (466)
T ss_pred heeeeccceEEEEEECCCCc-EEEEecCCCcEEEEEcCCCceeEEE-------------------EeccCCCceeeEEEE
Confidence 35668999999999999998 47888899999999999886 3332 22322 46777777
Q ss_pred CCCCC-EEEEEEc-CCEEEEEEccC-CCcccceEEeccccccEEEEEeeCCCCcEEEEEEcC-CCcEEEEECCCCceeEE
Q 001352 406 SPDGS-LLGVAYS-KHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYS 481 (1093)
Q Consensus 406 s~dg~-~las~~~-d~~i~iwd~~~-~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~-d~~i~vwd~~~~~~~~~ 481 (1093)
++++. +++..+. |+.+.+|+... ... ...+..|...|..++|+|++. .+++++. |+.+++|++.++..+..
T Consensus 119 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (466)
T COG2319 119 SPDGNSILLASSSLDGTVKLWDLSTPGKL---IRTLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLST 193 (466)
T ss_pred CCCcceEEeccCCCCccEEEEEecCCCeE---EEEEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEe
Confidence 88888 5555444 89999999987 432 236778999999999999998 6777775 99999999999999999
Q ss_pred eecCCCCeEEeeecccCCcc-EEEEEecCCeEEEEEcCCCCceE-EecCCCCceEEEEEccCCCEEEEEecCCCCceeEE
Q 001352 482 FEGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 559 (1093)
Q Consensus 482 ~~~h~~~v~~~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~ 559 (1093)
+.+|...|.++++. +++. .+++++.|+.|++||........ .+..+.... ...|+|++..+++++. ++.++
T Consensus 194 ~~~~~~~v~~~~~~--~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----d~~~~ 266 (466)
T COG2319 194 LAGHTDPVSSLAFS--PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSS----DGTIR 266 (466)
T ss_pred eccCCCceEEEEEc--CCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecC----CCcEE
Confidence 99999999999997 4555 55556999999999888666666 566666664 3489999988886665 67799
Q ss_pred EEeCCCCee-eeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEE
Q 001352 560 EWNESEGAI-KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL 638 (1093)
Q Consensus 560 iwd~~~~~~-~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l 638 (1093)
+|+...... ...+.+|. ..+.++.|.|++..+++++.|+.+.+|+..+...........+...+..+.+.+++..+
T Consensus 267 ~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (466)
T COG2319 267 LWDLRSSSSLLRTLSGHS---SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLL 343 (466)
T ss_pred EeeecCCCcEEEEEecCC---ccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEE
Confidence 999987665 44444444 78999999998888988888899999999888777666511222247888884333556
Q ss_pred EEE-ECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCcccee-ecccccceecce
Q 001352 639 AVI-ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS-VEAENKSEVEKP 716 (1093)
Q Consensus 639 ~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s-~~~d~~i~~w~~ 716 (1093)
+.+ ..|+.+.+|+............... +..+.+. ++ ..... +..++.+.+|+.
T Consensus 344 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----------------------~~-~~~~~~~~~~~~~~~~~~ 399 (466)
T COG2319 344 VSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFS----------------------PD-GRVVSSGSTDGTVRLWDL 399 (466)
T ss_pred EEeecCCCcEEeeecCCCceeEEecCCce-EEEEEEC----------------------CC-CCEEEEecCCCceEEEec
Confidence 665 6788999999987762222222111 4444444 22 22333 677889999997
Q ss_pred eeccCccccccccCccccc-cceEEEEeecCCceEEEeeccceeEEeeec
Q 001352 717 LFARPSECQSLLLPSKVKA-NKISRLTYNNGGQAIFALASNGVHLMWRWP 765 (1093)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~-~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~ 765 (1093)
.......... .. ..+....+++++..++.++.++.+++|+..
T Consensus 400 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (466)
T COG2319 400 STGSLLRNLD-------GHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLK 442 (466)
T ss_pred ccCeeeeecc-------CCCCcEEEEEECCCCcEEEEecCCCcEEEEecc
Confidence 6433222111 11 678889999999999998889999998754
No 161
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=3.6e-20 Score=210.07 Aligned_cols=296 Identities=16% Similarity=0.255 Sum_probs=226.6
Q ss_pred ceeeeecCCCceEEEEEccC----------CcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC
Q 001352 338 PMSMDFHPVQHTLLLVGTNV----------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 407 (1093)
Q Consensus 338 V~~~~~spdg~~llasg~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~ 407 (1093)
-..++|||++..++|+|... .++.||.+.-..... .++...-..-...-+.++|.+
T Consensus 9 ta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~--------------dlk~~~s~~s~~rF~kL~W~~ 74 (1049)
T KOG0307|consen 9 TATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESS--------------DLKPVGSLQSSNRFNKLAWGS 74 (1049)
T ss_pred cceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccc--------------cccccccccccccceeeeecc
Confidence 34689999998678877543 334444432211110 000000111345677899999
Q ss_pred CCCE----EEEEEcCCEEEEEEccC---CCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeE
Q 001352 408 DGSL----LGVAYSKHIVQLYAYHG---GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 480 (1093)
Q Consensus 408 dg~~----las~~~d~~i~iwd~~~---~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~ 480 (1093)
.|.. ||.|..||.|.+||... +.....+.....|.+.|..+.|++.+.. +|++|+.||.|.|||+..-+.-.
T Consensus 75 ~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n-lLASGa~~geI~iWDlnn~~tP~ 153 (1049)
T KOG0307|consen 75 YGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN-LLASGADDGEILIWDLNKPETPF 153 (1049)
T ss_pred cCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc-eeeccCCCCcEEEeccCCcCCCC
Confidence 8776 88899999999999876 4444445567789999999999999876 79999999999999998866555
Q ss_pred Eee--cCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC--ceEEEEEccCCCE-EEEEecCCCCc
Q 001352 481 SFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL--GCTRMAYSANGRR-LFSCGTSKEGE 555 (1093)
Q Consensus 481 ~~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--~v~~~~~s~d~~~-l~~~~~~~~~~ 555 (1093)
+.. .....|.+++|+.. ..+.|++++.+|.+.|||++..+.+..+..+.. .+..++|+|+... +++++ +.+..
T Consensus 154 ~~~~~~~~~eI~~lsWNrk-vqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As-~dd~~ 231 (1049)
T KOG0307|consen 154 TPGSQAPPSEIKCLSWNRK-VSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVAS-GDDSA 231 (1049)
T ss_pred CCCCCCCcccceEeccchh-hhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeec-CCCCC
Confidence 542 24577999999743 457899999999999999999988887766654 5788999998754 44444 45568
Q ss_pred eeEEEEeCCC-CeeeeeeecccccCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEec
Q 001352 556 SFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 633 (1093)
Q Consensus 556 ~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 633 (1093)
-.|.+||++. ...++++++|. ..|.++.|++.+ .++++++.|+.|.+|+.++++.+..+...+ ..+..+.|+|
T Consensus 232 PviqlWDlR~assP~k~~~~H~---~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~--nW~fdv~w~p 306 (1049)
T KOG0307|consen 232 PVIQLWDLRFASSPLKILEGHQ---RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQG--NWCFDVQWCP 306 (1049)
T ss_pred ceeEeecccccCCchhhhcccc---cceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCC--cceeeeeecC
Confidence 8899999875 45677788888 899999999987 788889999999999999999999998643 4688999999
Q ss_pred CCC-EEEEEECCCeEEEEEcCCC
Q 001352 634 NGT-LLAVIANENRIKILETPES 655 (1093)
Q Consensus 634 ~~~-~l~~~~~dg~i~iw~~~~~ 655 (1093)
... .+++++-||.|.|+.+.+.
T Consensus 307 r~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 307 RNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred CCcchhhhheeccceeeeeeecC
Confidence 554 8899999999999998865
No 162
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.83 E-value=8.2e-19 Score=179.64 Aligned_cols=293 Identities=16% Similarity=0.202 Sum_probs=214.0
Q ss_pred EEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEE--ECCCeEEEEEcCCCceeeecccccccceeee
Q 001352 595 LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI--ANENRIKILETPESNSVDAAGVLSDNLRKLS 672 (1093)
Q Consensus 595 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~ 672 (1093)
..++....+++||....+....+..+...+.+.++.|+.... |+++ +.|..+++|.-.....
T Consensus 6 ~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~--------------- 69 (673)
T KOG4378|consen 6 HVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTP--------------- 69 (673)
T ss_pred eeeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCC---------------
Confidence 334444579999998877777766666666789999988654 4443 4567778876443200
Q ss_pred ecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEE
Q 001352 673 VNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFA 752 (1093)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~ 752 (1093)
+|.+-... ....-.|++......++++
T Consensus 70 -------------------------------------~Vp~~~k~----------------~gd~~~Cv~~~s~S~y~~s 96 (673)
T KOG4378|consen 70 -------------------------------------EVPRVRKL----------------TGDNAFCVACASQSLYEIS 96 (673)
T ss_pred -------------------------------------ccceeecc----------------ccchHHHHhhhhcceeeec
Confidence 00000000 0111223333334478899
Q ss_pred eeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeC-CeEEEEEc
Q 001352 753 LASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIV 831 (1093)
Q Consensus 753 ~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d-g~i~iwd~ 831 (1093)
++..+.|+|||+... +....+. +|...|+++.+.-...|||++++ |.|.|..+
T Consensus 97 gG~~~~Vkiwdl~~k------------------------l~hr~lk--dh~stvt~v~YN~~DeyiAsvs~gGdiiih~~ 150 (673)
T KOG4378|consen 97 GGQSGCVKIWDLRAK------------------------LIHRFLK--DHQSTVTYVDYNNTDEYIASVSDGGDIIIHGT 150 (673)
T ss_pred cCcCceeeehhhHHH------------------------HHhhhcc--CCcceeEEEEecCCcceeEEeccCCcEEEEec
Confidence 999999999987642 1111122 38899999999999999999995 88999999
Q ss_pred cCceeEEEECCCCC-CeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeee-cccccCCeEEEEEeCCC-CEEEEEeCC
Q 001352 832 MTFKTILTIMPPSP-TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK-LEGHSKRVTGLVFSDAL-NILVSSGGD 908 (1093)
Q Consensus 832 ~~~~~~~~~~~~~~-~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~-l~~h~~~V~~l~~s~dg-~~l~s~s~d 908 (1093)
.++.....|....+ .+.-+.|+|....+|.+++.+|.|.+||+.....+.. .+.|..+...++|||.. .+|++.|.|
T Consensus 151 ~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~D 230 (673)
T KOG4378|consen 151 KTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYD 230 (673)
T ss_pred ccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEeccc
Confidence 99988888876544 5668999996666778899999999999997766544 45799999999999954 678999999
Q ss_pred CcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcCCcceeeeeecCCCCCEEEEEE
Q 001352 909 AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATF 987 (1093)
Q Consensus 909 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~f 987 (1093)
..|.+||............. .+.+.++|+++|.+|++| ..|.|..||+...+..-.....|...|++++|
T Consensus 231 kki~~yD~~s~~s~~~l~y~---------~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vaf 301 (673)
T KOG4378|consen 231 KKINIYDIRSQASTDRLTYS---------HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAF 301 (673)
T ss_pred ceEEEeecccccccceeeec---------CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEe
Confidence 99999999874432211111 258899999999999996 67899999998776655567789999999999
Q ss_pred ccCC
Q 001352 988 SCDC 991 (1093)
Q Consensus 988 s~dg 991 (1093)
-|..
T Consensus 302 q~s~ 305 (673)
T KOG4378|consen 302 QPSP 305 (673)
T ss_pred eecc
Confidence 8765
No 163
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=5.4e-17 Score=175.31 Aligned_cols=605 Identities=12% Similarity=0.112 Sum_probs=360.2
Q ss_pred CCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC-----
Q 001352 334 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD----- 408 (1093)
Q Consensus 334 h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d----- 408 (1093)
|..+-.++.|+|.| |+|-|+. ..|.+-|..+-+.+.. +.-|...|+.+.|.|-
T Consensus 14 ~~sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iqs-------------------ie~h~s~V~~VrWap~~~p~~ 71 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQS-------------------IELHQSAVTSVRWAPAPSPRD 71 (1062)
T ss_pred CcccccccccCccc--eEEEecC-ceEEEEehhhhhhhhc-------------------cccCccceeEEEeccCCCchh
Confidence 34467889999999 6888875 6799999988887765 5569999999999873
Q ss_pred -------CCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeC---CCCcEEEEEEcCCCcEEEEECCCCce
Q 001352 409 -------GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA---PCKQISVITCGDDKTIKVWDAVTGSR 478 (1093)
Q Consensus 409 -------g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~---d~~~l~l~s~~~d~~i~vwd~~~~~~ 478 (1093)
.-+||++...|.|.+||...+..+. .+..|..+|..++|-+ +.+. +|+.-....++.+|+..+|+.
T Consensus 72 llS~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k 147 (1062)
T KOG1912|consen 72 LLSPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEK 147 (1062)
T ss_pred ccCccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCce
Confidence 1267888889999999999876544 5678899999999865 3433 566666678999999999999
Q ss_pred eEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCC------ceEEe-cCCCC--------------------
Q 001352 479 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG------ARVDY-DAPGL-------------------- 531 (1093)
Q Consensus 479 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~------~~~~~-~~~~~-------------------- 531 (1093)
............++.+.|-... .+..-+..|.+.+.+.-... ....+ ..+..
T Consensus 148 ~Wk~~ys~~iLs~f~~DPfd~r-h~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~s 226 (1062)
T KOG1912|consen 148 FWKYDYSHEILSCFRVDPFDSR-HFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPAS 226 (1062)
T ss_pred eeccccCCcceeeeeeCCCCcc-eEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcc
Confidence 9887766667777887776443 44444455565555432111 11111 11110
Q ss_pred -----ceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCC--CEEEEEeCCCcEE
Q 001352 532 -----GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK--DQILAAGDDHVIK 604 (1093)
Q Consensus 532 -----~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~--~~l~~~~~dg~i~ 604 (1093)
-...++|+|.-+.++.... ...+.++|++-..++....-.. +.+.-+.+-|++ ..+++.-.||.+.
T Consensus 227 a~fity~a~faf~p~~rn~lfi~~----prellv~dle~~~~l~vvpier---~~akfv~vlP~~~rd~LfclH~nG~lt 299 (1062)
T KOG1912|consen 227 AYFITYCAQFAFSPHWRNILFITF----PRELLVFDLEYECCLAVVPIER---GGAKFVDVLPDPRRDALFCLHSNGRLT 299 (1062)
T ss_pred hhHHHHHHhhhcChhhhceEEEEe----ccceEEEcchhhceeEEEEecc---CCcceeEeccCCCcceEEEEecCCeEE
Confidence 0123567886655544444 3339999999888877776555 555566666664 5789999999999
Q ss_pred EEECCC----------------CceEEEEecCCCCCCCceEEEecC-CCEEEEEECCCeEEEEEcCCCceeeecc-----
Q 001352 605 IWDMNK----------------VQLLTTIDAGGGLPENPRICFNKN-GTLLAVIANENRIKILETPESNSVDAAG----- 662 (1093)
Q Consensus 605 iwd~~~----------------~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~----- 662 (1093)
+|-.+. +.....+..-... .....+..|. ...+++.-.+|...+|.+.+++......
T Consensus 300 irvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~-rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~ie 378 (1062)
T KOG1912|consen 300 IRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEF-RPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIE 378 (1062)
T ss_pred EEEeeccCccccccchhhccccccceEEEeechhc-ccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccccc
Confidence 997654 2222222111111 1122233343 4455556667888888887543221111
Q ss_pred --------------------------cccccceeeeecCCCceeeeeccCCceEecCCC-CCCCccceeecccccceecc
Q 001352 663 --------------------------VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDP-KEDVKPEISVEAENKSEVEK 715 (1093)
Q Consensus 663 --------------------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~d~~~l~s~~~d~~i~~w~ 715 (1093)
+|.....+....|........... .++. ..--..++.|...|+|.++|
T Consensus 379 l~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p-----~~n~~~~~~pLvAvGT~sGTV~vvd 453 (1062)
T KOG1912|consen 379 LVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDP-----GGNTPAGTVPLVAVGTNSGTVDVVD 453 (1062)
T ss_pred ccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCC-----CCCccceeeeeEEeecCCceEEEEE
Confidence 122222222222221111100000 0000 11124678899999999999
Q ss_pred eeeccCccccccccCccccccceEEEEeecCCceEEEeecc--ceeEEeeecCcccCcCcccccccCCcccCCCCCCcee
Q 001352 716 PLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN--GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFM 793 (1093)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d--g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (1093)
+.++....... .|...|.++.|..+.+.+-.+.+. ..-..+ .+.+.+-++.+|....
T Consensus 454 vst~~v~~~fs------vht~~VkgleW~g~sslvSfsys~~n~~sg~v---------------rN~l~vtdLrtGlsk~ 512 (1062)
T KOG1912|consen 454 VSTNAVAASFS------VHTSLVKGLEWLGNSSLVSFSYSHVNSASGGV---------------RNDLVVTDLRTGLSKR 512 (1062)
T ss_pred ecchhhhhhhc------ccccceeeeeeccceeEEEeeeccccccccce---------------eeeEEEEEcccccccc
Confidence 87655444333 388999999998887754443321 000000 1234455666666444
Q ss_pred eccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEc-CC---------------C
Q 001352 794 VNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFN-PH---------------D 856 (1093)
Q Consensus 794 ~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s-~~---------------d 856 (1093)
...+++ ....+|+.+..|.-|+||+... +.-+.+||+++..+++...-.-.-++.++|+ |. .
T Consensus 513 fR~l~~-~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q~sms 591 (1062)
T KOG1912|consen 513 FRGLQK-PDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQSSMS 591 (1062)
T ss_pred cccCCC-CCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeecccCCCCcccccchhhhhhh
Confidence 433333 4688999999999999999997 6779999998877666554444458888888 31 1
Q ss_pred CCEEEEEeCCCeEEEEEcCC-------cce-eeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeee
Q 001352 857 NNVIAIGMDDSTILIYNARS-------SEV-ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQ 928 (1093)
Q Consensus 857 ~~~lasg~~dg~i~iwd~~~-------~~~-~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 928 (1093)
.+..+..+ +..+++.+.. +.. ....+.....+..++|- +..|+.|..+|.+.+||+....-+. ...
T Consensus 592 ~n~vv~ds--~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAwk--~d~lv~GD~~GNl~~WDlg~R~SRg--~~d 665 (1062)
T KOG1912|consen 592 ENLVVLDS--VESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAWK--DDILVVGDVEGNLVVWDLGRRQSRG--VRD 665 (1062)
T ss_pred hceeeecc--ccchheehhhhhhhhccccchhhHHHHHHHHHHhhhcc--CCeeEeecccCceeEEecccccccC--ccC
Confidence 12233333 2233333321 111 11111112234446674 6799999999999999987632111 111
Q ss_pred cCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeeeecCC--CCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 001352 929 TPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIH 1006 (1093)
Q Consensus 929 ~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h--~~~v~~~~fs~dg~~l~t~~~dg~v~vw 1006 (1093)
.+. +. .......+-|....+++-...-+.+||.+....+..+ .|- +.++..+.+......++ ..|.++++-
T Consensus 666 ~p~-~r---a~~l~~~~ipG~~~~lvl~~d~~~lwdtk~~~lV~si-ag~dssfrlldvdlc~~~~~~l--~~d~~~Rf~ 738 (1062)
T KOG1912|consen 666 SPD-PR---AHSLTFPQIPGDHTTLVLELDWLPLWDTKADTLVLSI-AGMDSSFRLLDVDLCEKSPLVL--PNDNKERFR 738 (1062)
T ss_pred CCC-ch---hhheecccCCCCceEEEEecCcceecccccceeeeee-ccCCcceEEEEEEecccCceec--CCCCceeEE
Confidence 111 11 1223334445433444445556889999888777765 333 33455555554444444 345577776
Q ss_pred EcCCCce
Q 001352 1007 EASNLEV 1013 (1093)
Q Consensus 1007 d~~~~~~ 1013 (1093)
.+.....
T Consensus 739 ~m~mks~ 745 (1062)
T KOG1912|consen 739 VMPMKSP 745 (1062)
T ss_pred eccccCC
Confidence 6655433
No 164
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=7.1e-17 Score=174.44 Aligned_cols=495 Identities=13% Similarity=0.104 Sum_probs=294.7
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCC----------CCcEEEEEEcCCC
Q 001352 397 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP----------CKQISVITCGDDK 466 (1093)
Q Consensus 397 ~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d----------~~~l~l~s~~~d~ 466 (1093)
...-.++.|+|.| ++|.|+.. .|.+-|..+-+.+. .+.-|...|+.+.|.|- ...++++++...|
T Consensus 15 ~sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iq---sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G 89 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQ---SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG 89 (1062)
T ss_pred cccccccccCccc-eEEEecCc-eEEEEehhhhhhhh---ccccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence 3446788999877 78887665 48888988766555 67789999999999763 2446789999999
Q ss_pred cEEEEECCCCceeEEeecCCCCeEEeeecccCCc--cEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEcc-CCC
Q 001352 467 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI--HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGR 543 (1093)
Q Consensus 467 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~-d~~ 543 (1093)
.|.+||...+..+..+..|..++..++|.+..+. ..|++......+.+|+..+++....+........++.+.| |.+
T Consensus 90 rIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~r 169 (1062)
T KOG1912|consen 90 RIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSR 169 (1062)
T ss_pred cEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcc
Confidence 9999999999999999999999999999876543 4788888889999999999999888887777777788888 445
Q ss_pred EEEEEecCCCCceeEEEEeCC-------CCeeeeeeecccc----------------cCCC------eEEEEEcCCCCEE
Q 001352 544 RLFSCGTSKEGESFLVEWNES-------EGAIKRTYQGLQL----------------QHNS------VSVVHFDTAKDQI 594 (1093)
Q Consensus 544 ~l~~~~~~~~~~~~i~iwd~~-------~~~~~~~~~~~~~----------------~~~~------v~~v~~~~~~~~l 594 (1093)
.+...+. .|.+.+-+.- .|+..+.-..|.. .... ...++|+|.-+.+
T Consensus 170 h~~~l~s----~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~ 245 (1062)
T KOG1912|consen 170 HFCVLGS----KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNI 245 (1062)
T ss_pred eEEEEcc----CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhce
Confidence 5544433 3334443321 1222222211110 0000 1135678876666
Q ss_pred EEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCC--CEEEEEECCCeEEEEEcCCCceeeecccccccceeee
Q 001352 595 LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG--TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLS 672 (1093)
Q Consensus 595 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~--~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~ 672 (1093)
+-......+.++|++-..++..+....+. +.-+.+-|++ ..|++...||.+.+|-.+......... ...+.
T Consensus 246 lfi~~prellv~dle~~~~l~vvpier~~--akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~-----~~~l~ 318 (1062)
T KOG1912|consen 246 LFITFPRELLVFDLEYECCLAVVPIERGG--AKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKP-----NASLS 318 (1062)
T ss_pred EEEEeccceEEEcchhhceeEEEEeccCC--cceeEeccCCCcceEEEEecCCeEEEEEeeccCcccccc-----chhhc
Confidence 66677788999999999999888876553 5566777755 468999999999999876532111110 00000
Q ss_pred ecCCCceeeeeccCCceEecCCCCCC-CccceeecccccceecceeeccCccccccccCccccccceEEEEeecC-----
Q 001352 673 VNPISTVTGAGIANGSVSVNEDPKED-VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNG----- 746 (1093)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~s~d-~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~----- 746 (1093)
..-....-.+.+-.....+.+...|. ...++.--.+|.+.+|++..+......... ...-+..+.|...
T Consensus 319 ~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~-----~iel~~pf~f~~~~~~v~ 393 (1062)
T KOG1912|consen 319 MDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSS-----SIELVLPFDFNLSTKLVG 393 (1062)
T ss_pred cccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccc-----cccccccccccCceeehh
Confidence 00000000000000001111111222 333344445677788887643222111100 0001111111111
Q ss_pred CceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCe
Q 001352 747 GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGV 825 (1093)
Q Consensus 747 g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~ 825 (1093)
...++..+.||. ...|. ...-.++.......... .......+ .-.++|.|. .|+
T Consensus 394 k~~l~~LS~dg~-----------h~sGs-----~~~~~~p~p~~t~~~~~-----p~~n~~~~----~~pLvAvGT~sGT 448 (1062)
T KOG1912|consen 394 KTSLISLSDDGS-----------HSSGS-----TCVRMRPMPELTKVEND-----PGGNTPAG----TVPLVAVGTNSGT 448 (1062)
T ss_pred hccccchhhcCC-----------CCCCc-----eeeecccCcccceeecC-----CCCCccce----eeeeEEeecCCce
Confidence 111222222220 00000 00000110000000000 00000000 013567776 599
Q ss_pred EEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEE---------eCCCeEEEEEcCCccee--eeccc-ccCCeEEE
Q 001352 826 ISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIG---------MDDSTILIYNARSSEVI--SKLEG-HSKRVTGL 893 (1093)
Q Consensus 826 i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg---------~~dg~i~iwd~~~~~~~--~~l~~-h~~~V~~l 893 (1093)
|.++|+.++...+.+..|...|.++.|.. ..+++-.+ ..-+.+.+-|+.+|... +.+++ ...+|+.+
T Consensus 449 V~vvdvst~~v~~~fsvht~~VkgleW~g-~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~i 527 (1062)
T KOG1912|consen 449 VDVVDVSTNAVAASFSVHTSLVKGLEWLG-NSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAI 527 (1062)
T ss_pred EEEEEecchhhhhhhcccccceeeeeecc-ceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceee
Confidence 99999999999999999999999999985 44333322 22246788899998542 33333 56789999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEc
Q 001352 894 VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFH 946 (1093)
Q Consensus 894 ~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 946 (1093)
..|.-|++|+..-.|.-+.+||+.+.. +++...-... -++.+.|+
T Consensus 528 rvS~~~~yLai~Fr~~plEiwd~kt~~-----~lr~mS~a~P---~it~leWs 572 (1062)
T KOG1912|consen 528 RVSSSGRYLAILFRREPLEIWDLKTLR-----MLRLMSLALP---LITVLEWS 572 (1062)
T ss_pred eecccCceEEEEecccchHHHhhccch-----HHHHHhhcCC---cEEEEeec
Confidence 999999999999999999999998733 3322222111 37888888
No 165
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.81 E-value=4.9e-18 Score=165.32 Aligned_cols=409 Identities=11% Similarity=0.121 Sum_probs=260.1
Q ss_pred EEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEE
Q 001352 402 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 481 (1093)
Q Consensus 402 ~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~ 481 (1093)
-++|||+|+|+|+++.- .+.|-|.++-+..+.. .--..|..+.|..|... .+.....|+.|.+|++...+-...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf----~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF----LCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHH----HHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence 47899999999999766 6888888876543321 22456888999999875 566778899999999999999999
Q ss_pred eecCCCCeEEeeecccCCc-cEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001352 482 FEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 560 (1093)
Q Consensus 482 ~~~h~~~v~~~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~i 560 (1093)
+.....++.+++|+| || ..|.+...+-+|.+|.+.+..... +..+...+..++|+|||++.+.++.. |-...+.+
T Consensus 87 Ideg~agls~~~WSP--dgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRr-DCkdyv~i 162 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSP--DGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRR-DCKDYVQI 162 (447)
T ss_pred eccCCCcceeeeECC--CcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecc-cHHHHHHH
Confidence 988889999999965 55 577788889999999998765543 33344566889999999999988742 22333444
Q ss_pred EeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEE
Q 001352 561 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV 640 (1093)
Q Consensus 561 wd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 640 (1093)
..-.....++.+.... ...+.+.|+|||+.+++ ||.--.-.+...... -++..++|+|.+++|++
T Consensus 163 ~~c~~W~ll~~f~~dT---~DltgieWsPdg~~laV---------wd~~Leykv~aYe~~---lG~k~v~wsP~~qflav 227 (447)
T KOG4497|consen 163 SSCKAWILLKEFKLDT---IDLTGIEWSPDGNWLAV---------WDNVLEYKVYAYERG---LGLKFVEWSPCNQFLAV 227 (447)
T ss_pred HhhHHHHHHHhcCCCc---ccccCceECCCCcEEEE---------ecchhhheeeeeeec---cceeEEEeccccceEEe
Confidence 4334445555665554 56788999999987765 443221121122211 24788999999999999
Q ss_pred EECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeecc
Q 001352 641 IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 720 (1093)
Q Consensus 641 ~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~ 720 (1093)
|+.|+.+++.+--+-+.+..+- |...+ .|-+..+-..+...
T Consensus 228 GsyD~~lrvlnh~tWk~f~efl-hl~s~--------------------------------------~dp~~~~~~ke~~~ 268 (447)
T KOG4497|consen 228 GSYDQMLRVLNHFTWKPFGEFL-HLCSY--------------------------------------HDPTLHLLEKETFS 268 (447)
T ss_pred eccchhhhhhceeeeeehhhhc-cchhc--------------------------------------cCchhhhhhhhhcc
Confidence 9999999997654332222111 00000 00110000000000
Q ss_pred CccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCC
Q 001352 721 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS 800 (1093)
Q Consensus 721 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1093)
. -.-...++.|.|..- ...+|......+...... .++..-.+.+ +.+
T Consensus 269 ~------------~ql~~~cLsf~p~~~---------~a~~~~~se~~YE~~~~p---v~~~~lkp~t-------D~p-- 315 (447)
T KOG4497|consen 269 I------------VQLLHHCLSFTPTDL---------EAHIWEESETIYEQQMTP---VKVHKLKPPT-------DFP-- 315 (447)
T ss_pred h------------hhhcccccccCCCcc---------ccCccccchhhhhhhhcc---eeeecccCCC-------CCC--
Confidence 0 000112333433221 011111100000000000 0000000001 111
Q ss_pred CCCCCeeEEEEccCCCEEEEEeC---CeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc
Q 001352 801 NSQEAVPCFALSKNDAYLFSASG---GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 877 (1093)
Q Consensus 801 ~~~~~v~~l~~s~dg~~la~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~ 877 (1093)
+....+.-++||+|..++|+-.| +.+.+||+...+....+. ...+|....|.| +...|+.......+++|.....
T Consensus 316 nPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP-~~prL~vctg~srLY~W~psg~ 393 (447)
T KOG4497|consen 316 NPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDP-GRPRLVVCTGKSRLYFWAPSGP 393 (447)
T ss_pred CcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCC-CCceEEEEcCCceEEEEcCCCc
Confidence 23556778999999999999975 569999998766544443 556899999999 7777887777778999998765
Q ss_pred ceeeecccccCCeEEEEEeCCCCEEEEEeCCCc
Q 001352 878 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQ 910 (1093)
Q Consensus 878 ~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~ 910 (1093)
.++.. .+..-.|..+.|.-+|..++..+.|.-
T Consensus 394 ~~V~v-P~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 394 RVVGV-PKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred eEEec-CCCCceeeeEEecCCCcEEEEEcCCce
Confidence 55543 334467999999999999999998873
No 166
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.81 E-value=1.1e-17 Score=168.23 Aligned_cols=300 Identities=13% Similarity=0.150 Sum_probs=216.3
Q ss_pred ccceEEEEeecCCc-eEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEcc
Q 001352 735 ANKISRLTYNNGGQ-AIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 813 (1093)
Q Consensus 735 ~~~i~~l~~s~~g~-~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 813 (1093)
..++.++.|.+++. .+++++.|..+++|.+........+ ........+. .|...|+++.|+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~---------------~~V~y~s~Ls--~H~~aVN~vRf~p 75 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD---------------MKVEYLSSLS--RHTRAVNVVRFSP 75 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc---------------eeEEEeeccc--CCcceeEEEEEcC
Confidence 45788899988877 8999999999999998765321111 0112222233 3999999999999
Q ss_pred CCCEEEEEeC-CeEEEEEcc--------C--------ceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC
Q 001352 814 NDAYLFSASG-GVISLYIVM--------T--------FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS 876 (1093)
Q Consensus 814 dg~~la~~~d-g~i~iwd~~--------~--------~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~ 876 (1093)
+|..||+|+| |.+.+|-.. + +...+.+.+|...|..++|+| ++.++++|+-|..+++||+..
T Consensus 76 ~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~ 154 (434)
T KOG1009|consen 76 DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHA 154 (434)
T ss_pred CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEecc
Confidence 9999999996 889999765 3 445667888999999999999 999999999999999999999
Q ss_pred cceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeee---eecCCCcccC------------CCCce
Q 001352 877 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRS---LQTPDGVMTL------------APSET 941 (1093)
Q Consensus 877 ~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~------------~~~v~ 941 (1093)
|+....+.+|..-|..++|.|-++++++-+.|...+++.+.........- +....++... ..-..
T Consensus 155 G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFr 234 (434)
T KOG1009|consen 155 GQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFR 234 (434)
T ss_pred ceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhh
Confidence 99999999999999999999999999999999977777766533222111 1111111100 02356
Q ss_pred EEEEccCCCEEEEE-----eCC-----eEEEEEcCCcceeeeeecCCCCCEEEEEEcc------------------CCCE
Q 001352 942 HIQFHKDQTRFLLV-----HET-----HLAIYEAEELTCLKQWFPISSVPISQATFSC------------------DCRM 993 (1093)
Q Consensus 942 ~~~~s~dg~~l~~~-----~d~-----~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~------------------dg~~ 993 (1093)
.++|+|||.+|++. ..+ ..++|+-..........++-..++..+.|+| -+-.
T Consensus 235 RlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlv 314 (434)
T KOG1009|consen 235 RLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLV 314 (434)
T ss_pred hcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceE
Confidence 78999999999972 222 3456655443333322344455666677765 1223
Q ss_pred EEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecCC
Q 001352 994 VFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1063 (1093)
Q Consensus 994 l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~ 1063 (1093)
++.++ ...|.|||.++-..++......|.+.+ .++|++ ||..|+..+.||-+-+-.+..
T Consensus 315 faiAt-~~svyvydtq~~~P~~~v~nihy~~iT---------Diaws~-dg~~l~vSS~DGyCS~vtfe~ 373 (434)
T KOG1009|consen 315 FAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAIT---------DIAWSD-DGSVLLVSSTDGFCSLVTFEP 373 (434)
T ss_pred EEEee-cceEEEeccccccceEEEeeeeeeeec---------ceeecC-CCcEEEEeccCCceEEEEEcc
Confidence 44554 458999999998888776644443333 788998 699999999999777655543
No 167
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.81 E-value=3.9e-18 Score=173.84 Aligned_cols=267 Identities=15% Similarity=0.135 Sum_probs=199.7
Q ss_pred ecCCCCCeEEEEECCCC--CEEEEEEcCCEEEEEEccCCCc-ccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEE
Q 001352 393 VRDPGVSVNRVVWSPDG--SLLGVAYSKHIVQLYAYHGGSD-ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 469 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~dg--~~las~~~d~~i~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~ 469 (1093)
..-+.++|++++|+|.. +++|+|..-|.|-+||+.+.+. ......+..|..+|.++.|+|.+.. .+++.+.||+|+
T Consensus 182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s-~i~ssSyDGtiR 260 (498)
T KOG4328|consen 182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTS-QIYSSSYDGTIR 260 (498)
T ss_pred eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChh-heeeeccCceee
Confidence 33488999999999954 6889999999999999963322 2334457789999999999998765 789999999999
Q ss_pred EEECCCCce--eEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEccCCC-EE
Q 001352 470 VWDAVTGSR--TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGR-RL 545 (1093)
Q Consensus 470 vwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~d~~-~l 545 (1093)
.-|++++.. +.++..-...+.++.|. .+...++.+..=|...+||+++.+. ...+..|...|.+++++|-.. ++
T Consensus 261 ~~D~~~~i~e~v~s~~~d~~~fs~~d~~--~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~l 338 (498)
T KOG4328|consen 261 LQDFEGNISEEVLSLDTDNIWFSSLDFS--AESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFL 338 (498)
T ss_pred eeeecchhhHHHhhcCccceeeeecccc--CCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhe
Confidence 999987743 34443344445555554 3445677777777999999998776 445667777999999999665 56
Q ss_pred EEEecCCCCceeEEEEeCCCCeeeee-eecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC----CCCceEEEEecC
Q 001352 546 FSCGTSKEGESFLVEWNESEGAIKRT-YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM----NKVQLLTTIDAG 620 (1093)
Q Consensus 546 ~~~~~~~~~~~~i~iwd~~~~~~~~~-~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~----~~~~~~~~~~~~ 620 (1093)
++++. +.+.+|||++.-..... +-..-.|...|.+..|+|.+..|++.+.|..|+|||. ....+...+...
T Consensus 339 aT~s~----D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn 414 (498)
T KOG4328|consen 339 ATASL----DQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHN 414 (498)
T ss_pred eeccc----CcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeecc
Confidence 66665 77799999986544442 2222224488999999999989999999999999998 344455555433
Q ss_pred CCC---CCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccc
Q 001352 621 GGL---PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSD 666 (1093)
Q Consensus 621 ~~~---~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 666 (1093)
... -.....+|.|+..++++|-.-..|-|++...++.+..+..+..
T Consensus 415 ~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~ 463 (498)
T KOG4328|consen 415 NRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPES 463 (498)
T ss_pred CcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccc
Confidence 221 1234578999999999999999999999998887766554433
No 168
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.81 E-value=2.1e-18 Score=171.23 Aligned_cols=263 Identities=16% Similarity=0.215 Sum_probs=185.3
Q ss_pred ccCCCCceeeeecCCCc-eEEEEEccCCcEEEEecCCCce-eEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC-
Q 001352 332 IEGSSSPMSMDFHPVQH-TLLLVGTNVGDTGLWDVNSGQK-LFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD- 408 (1093)
Q Consensus 332 ~~h~~~V~~~~~spdg~-~llasg~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d- 408 (1093)
.+|.+.++.+.-++-|+ .++|+=+..|.|.|||+...-. +..-.+.+-+ ...-....+.+|...=..++|||-
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~----s~~~Pl~t~~ghk~EGy~LdWSp~~ 223 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD----SEFRPLFTFNGHKGEGYGLDWSPIK 223 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc----cccCceEEecccCccceeeeccccc
Confidence 35777888888887653 3566667789999999854211 1000000000 011112337789999999999993
Q ss_pred CCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCC---ceeEEeecC
Q 001352 409 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG---SRTYSFEGH 485 (1093)
Q Consensus 409 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~---~~~~~~~~h 485 (1093)
-..|++|.-.+.|++|...+|.-..-...+.+|+..|-.++|||..+. +++|||.||+|+|||++.+ .++.+ +.|
T Consensus 224 ~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh 301 (440)
T KOG0302|consen 224 TGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAAVST-KAH 301 (440)
T ss_pred ccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccceeEe-ecc
Confidence 235778877778999999987654444457789999999999999877 8999999999999999988 33443 789
Q ss_pred CCCeEEeeecccCCccEEEEEecCCeEEEEEcCCC---CceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEe
Q 001352 486 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL---GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 562 (1093)
Q Consensus 486 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd 562 (1093)
.+.|+.+.|+.. ..+|++|+.||+++|||++.. ..+..+..|..+|+++.|+|...-++.++. .+.+|.+||
T Consensus 302 ~sDVNVISWnr~--~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg---~D~QitiWD 376 (440)
T KOG0302|consen 302 NSDVNVISWNRR--EPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG---EDNQITIWD 376 (440)
T ss_pred CCceeeEEccCC--cceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc---CCCcEEEEE
Confidence 999999999644 349999999999999999864 456688999999999999996654444332 277899999
Q ss_pred CCCCee----------------eeeeecccccCCCeEEEEEcCCC-CEEEEEeCCCcEEEEE
Q 001352 563 ESEGAI----------------KRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWD 607 (1093)
Q Consensus 563 ~~~~~~----------------~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~dg~i~iwd 607 (1093)
+..-.- .+.+-.|. ....+.-+.|++.- .++++.+.|| +.||.
T Consensus 377 lsvE~D~ee~~~~a~~~L~dlPpQLLFVHq-GQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 377 LSVEADEEEIDQEAAEGLQDLPPQLLFVHQ-GQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred eeccCChhhhccccccchhcCCceeEEEec-chhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 863211 01111121 12467778888764 4666677777 45553
No 169
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.80 E-value=1e-17 Score=163.02 Aligned_cols=290 Identities=14% Similarity=0.191 Sum_probs=207.0
Q ss_pred ceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEEC-------CCCC
Q 001352 338 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS-------PDGS 410 (1093)
Q Consensus 338 V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-------~dg~ 410 (1093)
...+.|||||.- +.+-+.|..+.+|++...-.-....-. ........+--.....|...+|- |+..
T Consensus 52 ~kgckWSPDGSc-iL~~sedn~l~~~nlP~dlys~~~~~~------~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~ 124 (406)
T KOG2919|consen 52 LKGCKWSPDGSC-ILSLSEDNCLNCWNLPFDLYSKKADGP------LNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTN 124 (406)
T ss_pred hccceeCCCCce-EEeecccCeeeEEecChhhcccCCCCc------cccccceeEEeccCCEEEEEEeeeccccCCCccc
Confidence 346789999996 667789999999998431110000000 00000000011134567777775 6788
Q ss_pred EEEEEEcCCEEEEEEccCCCcccceEEeccccc---cEEEEEeeCCCCcEEEEEEcCCCcEEEEEC-CCCcee--EEe--
Q 001352 411 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVG---NVNDLAFSAPCKQISVITCGDDKTIKVWDA-VTGSRT--YSF-- 482 (1093)
Q Consensus 411 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~---~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~-~~~~~~--~~~-- 482 (1093)
++|+.+.+.-|++||.-+|+....... ..|.. ...+++|+|||. .|+ ++...+|+++|+ +.|+.- ...
T Consensus 125 l~a~ssr~~PIh~wdaftG~lraSy~~-ydh~de~taAhsL~Fs~DGe--qlf-aGykrcirvFdt~RpGr~c~vy~t~~ 200 (406)
T KOG2919|consen 125 LFAVSSRDQPIHLWDAFTGKLRASYRA-YDHQDEYTAAHSLQFSPDGE--QLF-AGYKRCIRVFDTSRPGRDCPVYTTVT 200 (406)
T ss_pred eeeeccccCceeeeeccccccccchhh-hhhHHhhhhheeEEecCCCC--eEe-ecccceEEEeeccCCCCCCcchhhhh
Confidence 999999999999999999986443222 23544 346899999999 455 455789999998 555432 111
Q ss_pred ---ecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEE
Q 001352 483 ---EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 559 (1093)
Q Consensus 483 ---~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~ 559 (1093)
.+..+.+.+++|+|. +...++.++...++-++.-...+....+.+|.+.|+.+.|.++|+.|++++.. +..|.
T Consensus 201 ~~k~gq~giisc~a~sP~-~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk---~dkIl 276 (406)
T KOG2919|consen 201 KGKFGQKGIISCFAFSPM-DSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARK---DDKIL 276 (406)
T ss_pred cccccccceeeeeeccCC-CCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccC---CCeEE
Confidence 123667888899876 44689999999999999999999999999999999999999999999998763 55699
Q ss_pred EEeCCC-CeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceEEEEecCCCCCCCceEEEecCCCE
Q 001352 560 EWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTL 637 (1093)
Q Consensus 560 iwd~~~-~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~ 637 (1093)
.||++. +.++..+..|....+.-.-....|++++|++|+.||.|++||+.+ |..+..+..+. ..++.++++|--.+
T Consensus 277 ~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~s--d~vNgvslnP~mpi 354 (406)
T KOG2919|consen 277 CWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYS--DTVNGVSLNPIMPI 354 (406)
T ss_pred EEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccc--ccccceecCcccce
Confidence 999975 456666766662122223345678899999999999999999998 66666665543 34899999999888
Q ss_pred EEEEECC
Q 001352 638 LAVIANE 644 (1093)
Q Consensus 638 l~~~~~d 644 (1093)
+++++..
T Consensus 355 latssGq 361 (406)
T KOG2919|consen 355 LATSSGQ 361 (406)
T ss_pred eeeccCc
Confidence 8877654
No 170
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.80 E-value=8e-18 Score=168.08 Aligned_cols=237 Identities=16% Similarity=0.261 Sum_probs=185.9
Q ss_pred eecCCCCCeEEEEECC-CCCEEEEEEcCCEEEEEEccCCCc----ccceEEeccccccEEEEEeeCCCCcEEEEEEcCCC
Q 001352 392 LVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 466 (1093)
Q Consensus 392 ~~~~h~~~V~~v~~s~-dg~~las~~~d~~i~iwd~~~~~~----~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~ 466 (1093)
+..||.++|..++|+| +...||+||.|.+|.||.+-.+.. ......+.||...|--++|+|...+ +|+|++.|.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~Dn 154 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSDN 154 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCCc
Confidence 4789999999999999 678899999999999999876543 2345578899999999999999877 799999999
Q ss_pred cEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC-ceEEEEEccCCCEE
Q 001352 467 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL-GCTRMAYSANGRRL 545 (1093)
Q Consensus 467 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~s~d~~~l 545 (1093)
+|.+||+.+|+.+.++. |...|++++|+ .||.++++.+.|..|||||.++++.+..-..|.+ .-..+.|-.+|. +
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn--~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i 230 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSFN--RDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-I 230 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEec--cCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-e
Confidence 99999999999999988 99999999994 5778999999999999999999988887766654 455667888898 6
Q ss_pred EEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEE-EeCCCcEEEEECCCCce-EEEEecCCCC
Q 001352 546 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQL-LTTIDAGGGL 623 (1093)
Q Consensus 546 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~-~~~dg~i~iwd~~~~~~-~~~~~~~~~~ 623 (1093)
++.+.++-.+.++-+||...-+.-..+.... ....|.--.|.++.+.++. |-.|+.|+.|.+....+ +.-+..-...
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~ 309 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSK 309 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccC
Confidence 6666667678899999987644332222222 1345666778898887766 55899999999987663 3333322333
Q ss_pred CCCceEEEecC
Q 001352 624 PENPRICFNKN 634 (1093)
Q Consensus 624 ~~v~~v~~s~~ 634 (1093)
.+-..+.|.|.
T Consensus 310 epQRG~g~mPK 320 (472)
T KOG0303|consen 310 EPQRGMGFMPK 320 (472)
T ss_pred Ccccccccccc
Confidence 44566777764
No 171
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.79 E-value=4.3e-19 Score=192.78 Aligned_cols=287 Identities=19% Similarity=0.279 Sum_probs=221.5
Q ss_pred HHHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEE
Q 001352 326 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 405 (1093)
Q Consensus 326 ~~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 405 (1093)
+.++.|.||...|.|+.|...|.| +++|+.|..|+||..+++.++.. ..||++.|+.++.
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~-Iitgsdd~lvKiwS~et~~~lAs-------------------~rGhs~ditdlav 240 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRY-IITGSDDRLVKIWSMETARCLAS-------------------CRGHSGDITDLAV 240 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccce-EeecCccceeeeeeccchhhhcc-------------------CCCCccccchhcc
Confidence 455678899999999999999986 89999999999999999999876 8899999999999
Q ss_pred CCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEE---e
Q 001352 406 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS---F 482 (1093)
Q Consensus 406 s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~---~ 482 (1093)
+.+..++|+++.|..|++|.+..+..+. .+.||++.|++++|+|- .+.+.||++++||..=.-.+.. +
T Consensus 241 s~~n~~iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~ 311 (1113)
T KOG0644|consen 241 SSNNTMIAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPL 311 (1113)
T ss_pred chhhhhhhhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCC
Confidence 9999999999999999999999998766 67899999999999994 3678899999999771111111 1
Q ss_pred ec-CCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCC-EEEEEecCCCCceeEEE
Q 001352 483 EG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR-RLFSCGTSKEGESFLVE 560 (1093)
Q Consensus 483 ~~-h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~~~~~~~~~~~~i~i 560 (1093)
+. ...-+.++.| ..++..+++++.|+.-..|.+.... .+...+.-+.++.|-. +.+++- .+..+.+
T Consensus 312 ~~~~~~~~~s~~~--~~~~~~f~Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar----~~~~~~v 379 (1113)
T KOG0644|consen 312 KFTEKDLVDSILF--ENNGDRFLTGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTAR----NDHRLCV 379 (1113)
T ss_pred Ccccccceeeeec--cccccccccccCCcccccchhhHhh------hhccceEEEeccccccccceeee----eeeEeee
Confidence 11 1233444444 4456678999999988887553211 1111222222332322 222222 2667899
Q ss_pred EeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEE
Q 001352 561 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQIL-AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 639 (1093)
Q Consensus 561 wd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 639 (1093)
|++.+|.+.+.+.+|. ..+..+.++|-+..++ +++.||...|||+-.|.+++..... + ..+....||++|..++
T Consensus 380 wnl~~g~l~H~l~ghs---d~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g-h-~kl~d~kFSqdgts~~ 454 (1113)
T KOG0644|consen 380 WNLYTGQLLHNLMGHS---DEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-H-GKLVDGKFSQDGTSIA 454 (1113)
T ss_pred eecccchhhhhhcccc---cceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc-c-ceeeccccCCCCceEe
Confidence 9999999999999988 8999999999877665 5899999999999999888776633 2 3467789999999999
Q ss_pred EEECCCeEEEEEcCCCcee
Q 001352 640 VIANENRIKILETPESNSV 658 (1093)
Q Consensus 640 ~~~~dg~i~iw~~~~~~~~ 658 (1093)
....-|.+.|.....+...
T Consensus 455 lsd~hgql~i~g~gqs~s~ 473 (1113)
T KOG0644|consen 455 LSDDHGQLYILGTGQSKSQ 473 (1113)
T ss_pred cCCCCCceEEeccCCCccc
Confidence 9998999999887765443
No 172
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.79 E-value=1.3e-16 Score=165.35 Aligned_cols=498 Identities=14% Similarity=0.120 Sum_probs=295.6
Q ss_pred CCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEe------eCC-CCcEEEEEEcCCCc
Q 001352 395 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF------SAP-CKQISVITCGDDKT 467 (1093)
Q Consensus 395 ~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~------s~d-~~~l~l~s~~~d~~ 467 (1093)
.|..-|.|+.|+.+...+.+++++..+.-||+.+.+ .... .+ ...-|....+ -.. +.. .++.++.||.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s-~~~~-~~--p~df~pt~~h~~~rs~~~g~~~d-~~~i~s~DGk 86 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDS-VEVA-KL--PDDFVPTDMHLGGRSSGGGKGSD-TLLICSNDGR 86 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchh-hhhh-hC--CcccCCccccccccccCCCCCcc-eEEEEcCCce
Confidence 367778899999888777776655555555555433 2111 11 1111111111 111 112 5788888999
Q ss_pred EEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEE
Q 001352 468 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 547 (1093)
Q Consensus 468 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 547 (1093)
+.+.+ +.|+.-..+..|.+.+.+-.|++ ||.-|++++.||.|++|.-. +-...++.....+|.|++|.|+.+.++.
T Consensus 87 f~il~-k~~rVE~sv~AH~~A~~~gRW~~--dGtgLlt~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~vl~ 162 (737)
T KOG1524|consen 87 FVILN-KSARVERSISAHAAAISSGRWSP--DGAGLLTAGEDGVIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNSIVF 162 (737)
T ss_pred EEEec-ccchhhhhhhhhhhhhhhcccCC--CCceeeeecCCceEEEEecc-chHHHHHhhcCceeEEEEECCCCCceEE
Confidence 99998 88888899999999999999954 66789999999999999632 2233344455668999999999998888
Q ss_pred EecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCc
Q 001352 548 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 627 (1093)
Q Consensus 548 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 627 (1093)
|. .+.+.+-.+.....+-..+.|. +-|.++.|++..+.+++|++|-..+|||... +.+..-..+ ..+|+
T Consensus 163 c~-----g~h~~IKpL~~n~k~i~WkAHD---GiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~Lf~S~~~--ey~IT 231 (737)
T KOG1524|consen 163 CQ-----GGHISIKPLAANSKIIRWRAHD---GLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-ANLFTSAAE--EYAIT 231 (737)
T ss_pred ec-----CCeEEEeecccccceeEEeccC---cEEEEeecCccccceeecCCceeEEeecccC-cccccCChh--cccee
Confidence 75 3347777777777777788887 9999999999999999999999999999754 444333333 34699
Q ss_pred eEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecc
Q 001352 628 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA 707 (1093)
Q Consensus 628 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~ 707 (1093)
+++|.|+ ..+++++.+ ++++ .
T Consensus 232 Sva~npd-~~~~v~S~n-t~R~---~------------------------------------------------------ 252 (737)
T KOG1524|consen 232 SVAFNPE-KDYLLWSYN-TARF---S------------------------------------------------------ 252 (737)
T ss_pred eeeeccc-cceeeeeee-eeee---c------------------------------------------------------
Confidence 9999999 666666652 3331 0
Q ss_pred cccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCC
Q 001352 708 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPR 787 (1093)
Q Consensus 708 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1093)
....+.|..++||+||..+++++..|.+.+=-.-..
T Consensus 253 ------------------------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq-------------------- 288 (737)
T KOG1524|consen 253 ------------------------SPRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQ-------------------- 288 (737)
T ss_pred ------------------------CCCccceEEEEEcCCCceeeccccCceEEEeeeehh--------------------
Confidence 013457888999999999999998887765211000
Q ss_pred CCCceeeccCCCCCCCCCeeEEEEccCCCEEEEE-eCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCC
Q 001352 788 HGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD 866 (1093)
Q Consensus 788 ~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d 866 (1093)
..+ -+.+=++. ....|.+-|+.++.+ ........+...+++. + +|+++. .
T Consensus 289 ----------------~l~-------~~n~~~t~~~r~~I~vrdV~~~v~--d~LE~p~rv~k~sL~Y--~-hLvvaT-s 339 (737)
T KOG1524|consen 289 ----------------QLV-------SGNLKATSKSRKSITVRDVATGVQ--DILEFPQRVVKFSLGY--G-HLVVAT-S 339 (737)
T ss_pred ----------------hhh-------hccceeEeeccceEEeehhhhhHH--HHhhCccceeeeeece--e-EEEEEe-c
Confidence 000 00011111 234566667665543 2222445566666554 2 344333 2
Q ss_pred CeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEc
Q 001352 867 STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFH 946 (1093)
Q Consensus 867 g~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 946 (1093)
..|++|.-......-.+.+....+.-+.-+ ...+++ ....+|.++..+...... ..++|... .....-..|
T Consensus 340 ~qvyiys~knwntpiiidgre~tr~lieq~-ek~fli--~dgsSi~lytyegR~~~n----p~~Pg~~~--dlL~~rtls 410 (737)
T KOG1524|consen 340 LQVYIYSEKNWNTPIIIDGREDTRNLIEQG-EKYFLI--LDGSSIWLYTYEGRLHLN----PRYPGSQI--DLLTWRTLS 410 (737)
T ss_pred cEEEEEecCCccCcEEEeccccchhHhhhh-hhheEE--ecCcEEEEEEecCceecC----CCCCCccc--ccccceeee
Confidence 467777765544334444433333222211 112222 223345666555422111 01111111 011122333
Q ss_pred cCCCEEEE--EeC-CeEEEEEc-CCcceeeee-ecCCCCCEEEEEEc----cCCCEEEEEeCCCcEEEEEcCCCceEEEe
Q 001352 947 KDQTRFLL--VHE-THLAIYEA-EELTCLKQW-FPISSVPISQATFS----CDCRMVFTSFVDGTLSIHEASNLEVQCRI 1017 (1093)
Q Consensus 947 ~dg~~l~~--~~d-~~i~vwd~-~~~~~~~~~-~~~h~~~v~~~~fs----~dg~~l~t~~~dg~v~vwd~~~~~~~~~~ 1017 (1093)
-....|+. ..| .-++++|. .+|+....- ...|...|..++.. ++++.++.-...+.+.|=.+.+.....++
T Consensus 411 LandtLaird~ad~kvlhlFd~istgk~qgDgk~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee~I 490 (737)
T KOG1524|consen 411 LANDTLAIRDNADPKVLHLFDLISTGKRQGDGKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEEEI 490 (737)
T ss_pred cccceEEeecCCCCeeEEeccCCCCCcccCCccccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchhhh
Confidence 33444555 233 35888998 666654321 11244455555553 45567777777777777666554333222
Q ss_pred ccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecCCCC
Q 001352 1018 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1065 (1093)
Q Consensus 1018 ~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~ 1065 (1093)
.-.... | ..++|+ |...+++|-.|+.+.+|=.+...
T Consensus 491 ~KiGTm--------V--htLawn--dttNiLcglqDt~fsVWy~pn~v 526 (737)
T KOG1524|consen 491 YKIGTM--------V--HTLAWN--DTTNILCGLQDTCFSVWYYPNEV 526 (737)
T ss_pred hhhhhh--------h--hhhhhc--cccceeeeeccceEEEEEcCCcc
Confidence 211111 1 246677 46789999999999999876543
No 173
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.79 E-value=3.6e-17 Score=159.35 Aligned_cols=337 Identities=12% Similarity=0.151 Sum_probs=227.3
Q ss_pred EEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEE-EeCCCcEEEEECCCCceE
Q 001352 536 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQLL 614 (1093)
Q Consensus 536 ~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~ 614 (1093)
.+|||+|+++++++ +..+.+-|..+-+..+.+.... .|..+.|..+..++++ ...++.|.+|++...+..
T Consensus 14 c~fSp~g~yiAs~~-----~yrlviRd~~tlq~~qlf~cld----ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ 84 (447)
T KOG4497|consen 14 CSFSPCGNYIASLS-----RYRLVIRDSETLQLHQLFLCLD----KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWY 84 (447)
T ss_pred eeECCCCCeeeeee-----eeEEEEeccchhhHHHHHHHHH----HhhheeeeccceeeeeeeeccceEEEEEeecceeE
Confidence 67999999999997 4468899988888777776543 6788899999888887 568889999999988887
Q ss_pred EEEecCCCCCCCceEEEecCCCEEEEE-ECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecC
Q 001352 615 TTIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE 693 (1093)
Q Consensus 615 ~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1093)
..+... ..++.+++|||||+.+... .-+-.|.+|.+.+........
T Consensus 85 ckIdeg--~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~------------------------------- 131 (447)
T KOG4497|consen 85 CKIDEG--QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH------------------------------- 131 (447)
T ss_pred EEeccC--CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc-------------------------------
Confidence 777644 4568999999999766654 458889999988663322110
Q ss_pred CCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCc
Q 001352 694 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST 773 (1093)
Q Consensus 694 ~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~ 773 (1093)
....+..++|++||++.+..+.....-.+.+.
T Consensus 132 ----------------------------------------pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~-------- 163 (447)
T KOG4497|consen 132 ----------------------------------------PKTNVKGYAFHPDGQFCAILSRRDCKDYVQIS-------- 163 (447)
T ss_pred ----------------------------------------cccCceeEEECCCCceeeeeecccHHHHHHHH--------
Confidence 11234667888888866655543111000000
Q ss_pred ccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe---CCeEEEEEccCceeEEEECCCCCCeEEE
Q 001352 774 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSL 850 (1093)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l 850 (1093)
..+-|.+. ..+.+ ..-..+.+.|+|||..||+-. +-.|..|.. .-.+..+
T Consensus 164 ------~c~~W~ll-----~~f~~----dT~DltgieWsPdg~~laVwd~~Leykv~aYe~------------~lG~k~v 216 (447)
T KOG4497|consen 164 ------SCKAWILL-----KEFKL----DTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYER------------GLGLKFV 216 (447)
T ss_pred ------hhHHHHHH-----HhcCC----CcccccCceECCCCcEEEEecchhhheeeeeee------------ccceeEE
Confidence 01112111 11111 334456788999988887754 223333332 2357788
Q ss_pred EEcCCCCCEEEEEeCCCeEEEEEcCCcce---------------------------------------------------
Q 001352 851 AFNPHDNNVIAIGMDDSTILIYNARSSEV--------------------------------------------------- 879 (1093)
Q Consensus 851 ~~s~~d~~~lasg~~dg~i~iwd~~~~~~--------------------------------------------------- 879 (1093)
+|+| .+++|++|+.|+.++|-+--+.+.
T Consensus 217 ~wsP-~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~ 295 (447)
T KOG4497|consen 217 EWSP-CNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETI 295 (447)
T ss_pred Eecc-ccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhh
Confidence 8999 888999999998888755322111
Q ss_pred ---------eeecc------cccCCeEEEEEeCCCCEEEEEeC--CCcEEEEeCCCCceeeeeeeecCCCcccCCCCceE
Q 001352 880 ---------ISKLE------GHSKRVTGLVFSDALNILVSSGG--DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH 942 (1093)
Q Consensus 880 ---------~~~l~------~h~~~V~~l~~s~dg~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 942 (1093)
+..++ ...-.+.-++||+|..+++|-.. -..+-+||+...+ +...+... .+|.+
T Consensus 296 YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~-----l~avLiQk----~pira 366 (447)
T KOG4497|consen 296 YEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK-----LHAVLIQK----HPIRA 366 (447)
T ss_pred hhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh-----hhhhhhhc----cceeE
Confidence 11111 11123567999999999998643 3569999998744 22222222 25899
Q ss_pred EEEccCCCEEEEE-eCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCC
Q 001352 943 IQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG 1001 (1093)
Q Consensus 943 ~~~s~dg~~l~~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg 1001 (1093)
..|.|....|++. ....+++|......++.... .+-.|..+.|.-+|..++..+.|-
T Consensus 367 f~WdP~~prL~vctg~srLY~W~psg~~~V~vP~--~GF~i~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 367 FEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPK--KGFNIQKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred EEeCCCCceEEEEcCCceEEEEcCCCceEEecCC--CCceeeeEEecCCCcEEEEEcCCc
Confidence 9999999988884 55679999988766666533 357899999999999999999885
No 174
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.78 E-value=1.9e-17 Score=161.03 Aligned_cols=198 Identities=16% Similarity=0.194 Sum_probs=153.0
Q ss_pred CeeEEEEccCCCEEEEEeCCeEEEEEc-cCceeEEE---E----CCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC
Q 001352 805 AVPCFALSKNDAYLFSASGGVISLYIV-MTFKTILT---I----MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS 876 (1093)
Q Consensus 805 ~v~~l~~s~dg~~la~~~dg~i~iwd~-~~~~~~~~---~----~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~ 876 (1093)
...+++|+|||..|..|....|+++|+ ..|+.-.. + .+..+-|.+++|+|.+.+.+|+|+....+-||.-..
T Consensus 160 aAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~ 239 (406)
T KOG2919|consen 160 AAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG 239 (406)
T ss_pred hheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC
Confidence 345899999999999999999999999 44432211 1 123567899999998888999999999999999999
Q ss_pred cceeeecccccCCeEEEEEeCCCCEEEEEeC-CCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE
Q 001352 877 SEVISKLEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 955 (1093)
Q Consensus 877 ~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~ 955 (1093)
++++..+-+|.+.|+.+.|.+||+.|.+|+. |-.|..||+.... ..+-.+..|......-......|+|++|++|
T Consensus 240 ~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~----~pv~~L~rhv~~TNQRI~FDld~~~~~LasG 315 (406)
T KOG2919|consen 240 RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR----DPVYALERHVGDTNQRILFDLDPKGEILASG 315 (406)
T ss_pred CCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc----chhhhhhhhccCccceEEEecCCCCceeecc
Confidence 9999999999999999999999999999886 6679999998633 1222333333211122345668999999996
Q ss_pred -eCCeEEEEEcCC-cceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 001352 956 -HETHLAIYEAEE-LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1010 (1093)
Q Consensus 956 -~d~~i~vwd~~~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~ 1010 (1093)
.+|.|++||+.+ |..+.. ...|+..+..+++.|-=.+++|++.. ++|..++
T Consensus 316 ~tdG~V~vwdlk~~gn~~sv-~~~~sd~vNgvslnP~mpilatssGq---r~f~~~~ 368 (406)
T KOG2919|consen 316 DTDGSVRVWDLKDLGNEVSV-TGNYSDTVNGVSLNPIMPILATSSGQ---RIFKYPK 368 (406)
T ss_pred CCCccEEEEecCCCCCcccc-cccccccccceecCcccceeeeccCc---eeecCCC
Confidence 899999999998 665555 55688999999999987778887654 3454433
No 175
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.78 E-value=3.5e-18 Score=169.67 Aligned_cols=173 Identities=22% Similarity=0.365 Sum_probs=146.3
Q ss_pred HHHHHhhccCCCCceeeeecC--CCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEE
Q 001352 325 KTVAQTLIEGSSSPMSMDFHP--VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 402 (1093)
Q Consensus 325 ~~~~~~l~~h~~~V~~~~~sp--dg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 402 (1093)
.+-+.++.+|..+=.+++||| .|+ |++|..-+.|++|...+|.-... ..-+.+|+..|-.
T Consensus 201 ~~Pl~t~~ghk~EGy~LdWSp~~~g~--LlsGDc~~~I~lw~~~~g~W~vd----------------~~Pf~gH~~SVED 262 (440)
T KOG0302|consen 201 FRPLFTFNGHKGEGYGLDWSPIKTGR--LLSGDCVKGIHLWEPSTGSWKVD----------------QRPFTGHTKSVED 262 (440)
T ss_pred cCceEEecccCccceeeecccccccc--cccCccccceEeeeeccCceeec----------------Cccccccccchhh
Confidence 345677889999999999999 454 78888889999999998764332 1226679999999
Q ss_pred EEECCC-CCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECC---CCce
Q 001352 403 VVWSPD-GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---TGSR 478 (1093)
Q Consensus 403 v~~s~d-g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~---~~~~ 478 (1093)
++|||. ...||+||-||+|+|||+..+.....+ ..+.|.+.|+.++|+.+-. +|++|+.||+++|||++ .+++
T Consensus 263 LqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~-~~kAh~sDVNVISWnr~~~--lLasG~DdGt~~iwDLR~~~~~~p 339 (440)
T KOG0302|consen 263 LQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV-STKAHNSDVNVISWNRREP--LLASGGDDGTLSIWDLRQFKSGQP 339 (440)
T ss_pred hccCCccCceEEeeecCceEEEEEecCCCcccee-EeeccCCceeeEEccCCcc--eeeecCCCceEEEEEhhhccCCCc
Confidence 999995 568999999999999999998543333 3478999999999999887 89999999999999987 4678
Q ss_pred eEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCC
Q 001352 479 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 519 (1093)
Q Consensus 479 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 519 (1093)
+..|+.|..+|+++.|+|..+ ..|++++.|.+|.+||+..
T Consensus 340 VA~fk~Hk~pItsieW~p~e~-s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 340 VATFKYHKAPITSIEWHPHED-SVIAASGEDNQITIWDLSV 379 (440)
T ss_pred ceeEEeccCCeeEEEeccccC-ceEEeccCCCcEEEEEeec
Confidence 899999999999999998866 5888899999999999864
No 176
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=7.4e-18 Score=171.37 Aligned_cols=253 Identities=13% Similarity=0.189 Sum_probs=185.4
Q ss_pred CceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccc------eeeeeeecCCCCCeEEEEECCC-CCEEEEEEcCC
Q 001352 347 QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSM------LFKTALVRDPGVSVNRVVWSPD-GSLLGVAYSKH 419 (1093)
Q Consensus 347 g~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~h~~~V~~v~~s~d-g~~las~~~d~ 419 (1093)
|. ++|.|+.|..|.|||+.=...+. +..-+..... ..+.....+|+..|.+++|+.+ ...||+||.|.
T Consensus 192 gN-yvAiGtmdp~IeIWDLDI~d~v~----P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~ 266 (463)
T KOG0270|consen 192 GN-YVAIGTMDPEIEIWDLDIVDAVL----PCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADK 266 (463)
T ss_pred cc-eEEEeccCceeEEeccccccccc----cceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCc
Confidence 45 59999999999999986432221 0001100000 0012235589999999999986 45789999999
Q ss_pred EEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCC
Q 001352 420 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKEN 499 (1093)
Q Consensus 420 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 499 (1093)
+|++||+.+|++.. ++..|.+.|.+++|.|.... +|++|+.|++|.+.|.+........-...+.|-.++|.+...
T Consensus 267 TV~lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se 342 (463)
T KOG0270|consen 267 TVKLWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSE 342 (463)
T ss_pred eEEEEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCc
Confidence 99999999998766 66789999999999998766 899999999999999885333322222567788889876543
Q ss_pred ccEEEEEecCCeEEEEEcCCC-CceEEecCCCCceEEEEEccCCCEEE-EEecCCCCceeEEEEeCCCCeeeeeeecccc
Q 001352 500 IHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSANGRRLF-SCGTSKEGESFLVEWNESEGAIKRTYQGLQL 577 (1093)
Q Consensus 500 ~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~s~d~~~l~-~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~ 577 (1093)
..++++..||+|+-+|++.. ++..++..|..+|.++++++.-..++ +++. ++.|.+|++..-.... ...|..
T Consensus 343 -~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~----d~~Vklw~~~~~~~~~-v~~~~~ 416 (463)
T KOG0270|consen 343 -NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAST----DKVVKLWKFDVDSPKS-VKEHSF 416 (463)
T ss_pred -eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccc----cceEEEEeecCCCCcc-cccccc
Confidence 57888899999999999987 67889999999999999998766544 4443 7789999986543321 122221
Q ss_pred cCCCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCceE
Q 001352 578 QHNSVSVVHFDTAKDQIL-AAGDDHVIKIWDMNKVQLL 614 (1093)
Q Consensus 578 ~~~~v~~v~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~ 614 (1093)
.-+...|.++.|+-.+++ .|+..+.++|||+.+...+
T Consensus 417 ~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 417 KLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred cccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 224577788888866554 4778888999999876554
No 177
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.78 E-value=6e-16 Score=160.45 Aligned_cols=497 Identities=12% Similarity=0.166 Sum_probs=287.2
Q ss_pred cCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEE--CCCCC
Q 001352 333 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW--SPDGS 410 (1093)
Q Consensus 333 ~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~--s~dg~ 410 (1093)
.|+..|.|+.|+.+.. ++.++ .|..+.+|.-.+..........--+ +. -..| +....- -....
T Consensus 12 r~~e~vc~v~w~~~ee-i~~~~-dDh~~~~~~~~~~~s~~~~~~p~df-------~p---t~~h---~~~rs~~~g~~~d 76 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEE-IYFVS-DDHQIFKWSDVSRDSVEVAKLPDDF-------VP---TDMH---LGGRSSGGGKGSD 76 (737)
T ss_pred ccceeEEeecccccce-EEEec-cCceEEEeecccchhhhhhhCCccc-------CC---cccc---ccccccCCCCCcc
Confidence 4777889999999987 45554 4555555544332222111100000 00 0001 000000 01235
Q ss_pred EEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeE
Q 001352 411 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 490 (1093)
Q Consensus 411 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~ 490 (1093)
.++.++.||.+.|-+-.. + ....+..|.+.|.+-.|+|||. -|+|+|.||.|++|. ++|-...++.....+|+
T Consensus 77 ~~~i~s~DGkf~il~k~~-r---VE~sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~ 149 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNKSA-R---VERSISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIR 149 (737)
T ss_pred eEEEEcCCceEEEecccc-h---hhhhhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEe-ccchHHHHHhhcCceeE
Confidence 678888999888877543 2 2225778999999999999999 799999999999999 88887777777888999
Q ss_pred EeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeee
Q 001352 491 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 570 (1093)
Q Consensus 491 ~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 570 (1093)
|++|.|+.+ ..+++. .+.+.+=.+.....+.....|.+-|.++.|++..+.+++++. |....+||.. |..+.
T Consensus 150 c~~W~p~S~-~vl~c~--g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGE----D~kfKvWD~~-G~~Lf 221 (737)
T KOG1524|consen 150 CARWAPNSN-SIVFCQ--GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGE----DFRFKIWDAQ-GANLF 221 (737)
T ss_pred EEEECCCCC-ceEEec--CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCC----ceeEEeeccc-Ccccc
Confidence 999987654 344443 345566566777778888999999999999999999999986 7789999954 55555
Q ss_pred eeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEE
Q 001352 571 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 650 (1093)
Q Consensus 571 ~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 650 (1093)
.-..|. .+|++++|.|+ ..++.++. ++++ +.. ...+.|..++||+||..+++|+..|.+.+=
T Consensus 222 ~S~~~e---y~ITSva~npd-~~~~v~S~-nt~R------------~~~-p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 222 TSAAEE---YAITSVAFNPE-KDYLLWSY-NTAR------------FSS-PRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred cCChhc---cceeeeeeccc-cceeeeee-eeee------------ecC-CCccceEEEEEcCCCceeeccccCceEEEe
Confidence 555555 89999999999 55555553 2333 211 123468899999999999999999987663
Q ss_pred EcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccC
Q 001352 651 ETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLP 730 (1093)
Q Consensus 651 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~ 730 (1093)
-.-..+... +..-++......+.+-|+... .+..+.+|
T Consensus 284 ~~ieq~l~~---------------------------------------~n~~~t~~~r~~I~vrdV~~~---v~d~LE~p 321 (737)
T KOG1524|consen 284 YAIEQQLVS---------------------------------------GNLKATSKSRKSITVRDVATG---VQDILEFP 321 (737)
T ss_pred eeehhhhhh---------------------------------------ccceeEeeccceEEeehhhhh---HHHHhhCc
Confidence 332221110 111111112222333332211 11222222
Q ss_pred ccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEE
Q 001352 731 SKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA 810 (1093)
Q Consensus 731 ~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 810 (1093)
..+.... -.-.+|++++.. .+++|.- +-|++. ..++. ....+.-+.
T Consensus 322 -----~rv~k~s--L~Y~hLvvaTs~-qvyiys~-----------------knwntp-----iiidg----re~tr~lie 367 (737)
T KOG1524|consen 322 -----QRVVKFS--LGYGHLVVATSL-QVYIYSE-----------------KNWNTP-----IIIDG----REDTRNLIE 367 (737)
T ss_pred -----cceeeee--eceeEEEEEecc-EEEEEec-----------------CCccCc-----EEEec----cccchhHhh
Confidence 2343333 223334444433 4444431 112211 11110 011110000
Q ss_pred EccCCCEEEEEeCCeEEEEEccCceeEEEECCCCCC-----eEEEEEcCCCCCEEEEE--eCCCeEEEEEc-CCcceee-
Q 001352 811 LSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPT-----ATSLAFNPHDNNVIAIG--MDDSTILIYNA-RSSEVIS- 881 (1093)
Q Consensus 811 ~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~-----i~~l~~s~~d~~~lasg--~~dg~i~iwd~-~~~~~~~- 881 (1093)
...+++......+|.+|..+ |+.......+... -..+.+. ...|+.- .....+.+||. .+|+...
T Consensus 368 --q~ek~fli~dgsSi~lytye-gR~~~np~~Pg~~~dlL~~rtlsLa---ndtLaird~ad~kvlhlFd~istgk~qgD 441 (737)
T KOG1524|consen 368 --QGEKYFLILDGSSIWLYTYE-GRLHLNPRYPGSQIDLLTWRTLSLA---NDTLAIRDNADPKVLHLFDLISTGKRQGD 441 (737)
T ss_pred --hhhhheEEecCcEEEEEEec-CceecCCCCCCcccccccceeeecc---cceEEeecCCCCeeEEeccCCCCCcccCC
Confidence 01123333333557777654 3332222212111 1233332 2244442 23347788998 6676542
Q ss_pred -ecccccCCeEEEEEe----CCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEe
Q 001352 882 -KLEGHSKRVTGLVFS----DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH 956 (1093)
Q Consensus 882 -~l~~h~~~V~~l~~s----~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~ 956 (1093)
.+-.|...|..++.. ++.+.++.-...+.+.|=.+.+-... .+.+ ..+..|..++|+..-+.|+--.
T Consensus 442 gk~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgke-e~I~-------KiGTmVhtLawndttNiLcglq 513 (737)
T KOG1524|consen 442 GKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKE-EEIY-------KIGTMVHTLAWNDTTNILCGLQ 513 (737)
T ss_pred ccccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCch-hhhh-------hhhhhhhhhhhccccceeeeec
Confidence 222366667666664 34567777777887877766542111 1111 1223588899999988888889
Q ss_pred CCeEEEEEcCC
Q 001352 957 ETHLAIYEAEE 967 (1093)
Q Consensus 957 d~~i~vwd~~~ 967 (1093)
|+.+.||-..+
T Consensus 514 Dt~fsVWy~pn 524 (737)
T KOG1524|consen 514 DTCFSVWYYPN 524 (737)
T ss_pred cceEEEEEcCC
Confidence 99999998754
No 178
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.77 E-value=3.8e-17 Score=163.31 Aligned_cols=236 Identities=14% Similarity=0.206 Sum_probs=181.0
Q ss_pred CCCEEEEE---EcCCEEEEEEc-cCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCC-------
Q 001352 408 DGSLLGVA---YSKHIVQLYAY-HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG------- 476 (1093)
Q Consensus 408 dg~~las~---~~d~~i~iwd~-~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~------- 476 (1093)
+.++||+. +..|...+--+ ++|+.-...-...||+++|..++|+|-+.+ .++|||.|.+|.||++..+
T Consensus 43 NPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~-vIASgSeD~~v~vW~IPe~~l~~~lt 121 (472)
T KOG0303|consen 43 NPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDC-VIASGSEDTKVMVWQIPENGLTRDLT 121 (472)
T ss_pred CCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCc-eeecCCCCceEEEEECCCcccccCcc
Confidence 45666654 22223333322 244433334456799999999999998877 8999999999999998755
Q ss_pred ceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCce
Q 001352 477 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 556 (1093)
Q Consensus 477 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~ 556 (1093)
+.+..+.+|...|..+.|+|... +.|++++.|.+|.+|++.+++....+. |...|.++.|+.||.++++.+. |.
T Consensus 122 epvv~L~gH~rrVg~V~wHPtA~-NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~Ttck----DK 195 (472)
T KOG0303|consen 122 EPVVELYGHQRRVGLVQWHPTAP-NVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCK----DK 195 (472)
T ss_pred cceEEEeecceeEEEEeecccch-hhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecc----cc
Confidence 34677889999999999998865 689999999999999999999999888 8889999999999999999986 66
Q ss_pred eEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEe----CCCcEEEEECCCCce---EEEEecCCCCCCCceE
Q 001352 557 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQL---LTTIDAGGGLPENPRI 629 (1093)
Q Consensus 557 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~----~dg~i~iwd~~~~~~---~~~~~~~~~~~~v~~v 629 (1093)
.|++||.++++.+..-.+|. +..-..+.|-.++. +++.+ .+..+-+||..+-+. ...+.. ...|.--
T Consensus 196 kvRv~dpr~~~~v~e~~~he--G~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt---SnGvl~P 269 (472)
T KOG0303|consen 196 KVRVIDPRRGTVVSEGVAHE--GAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDT---SNGVLLP 269 (472)
T ss_pred eeEEEcCCCCcEeeeccccc--CCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEecc---CCceEEe
Confidence 79999999999998887777 33445566777887 55544 678899999776433 233322 2346666
Q ss_pred EEecCCCEEEEEE-CCCeEEEEEcCCCc
Q 001352 630 CFNKNGTLLAVIA-NENRIKILETPESN 656 (1093)
Q Consensus 630 ~~s~~~~~l~~~~-~dg~i~iw~~~~~~ 656 (1093)
-|.+|.+.++.++ .|+.|+-|.+....
T Consensus 270 FyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 270 FYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eecCCCCEEEEEecCCcceEEEEecCCC
Confidence 7788888776554 59999999998765
No 179
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=2.8e-18 Score=194.95 Aligned_cols=251 Identities=14% Similarity=0.160 Sum_probs=197.8
Q ss_pred CceeeeecCCCce---EEEEEccCCcEEEEecCCC---ceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCC
Q 001352 337 SPMSMDFHPVQHT---LLLVGTNVGDTGLWDVNSG---QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 410 (1093)
Q Consensus 337 ~V~~~~~spdg~~---llasg~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~ 410 (1093)
.-..++|.+.|.. ++|.|..||.|.+||...- ..... ......|++.|..+.|++.+.
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~----------------la~~~~h~G~V~gLDfN~~q~ 129 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEV----------------LATKSKHTGPVLGLDFNPFQG 129 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHH----------------HhhhcccCCceeeeeccccCC
Confidence 5678899888876 6999999999999998762 11100 011556999999999999766
Q ss_pred -EEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCC--
Q 001352 411 -LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA-- 487 (1093)
Q Consensus 411 -~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~-- 487 (1093)
+||+|+.||.|.|||+..-+.-.... -....+.|.+++|+..-.. +|++++.+|.+.|||++..+.+-.+..|..
T Consensus 130 nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqh-ILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~ 207 (1049)
T KOG0307|consen 130 NLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSH-ILASGSPSGRAVIWDLRKKKPIIKLSDTPGRM 207 (1049)
T ss_pred ceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhH-HhhccCCCCCceeccccCCCcccccccCCCcc
Confidence 99999999999999998754322111 1124568999999988776 799999999999999999988877766654
Q ss_pred CeEEeeecccCCccEEEEEecCC--eEEEEEcCCCCc-eEEecCCCCceEEEEEccCC-CEEEEEecCCCCceeEEEEeC
Q 001352 488 PVYSLCPHAKENIHFIFSISVDG--KIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNE 563 (1093)
Q Consensus 488 ~v~~~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~d~-~~l~~~~~~~~~~~~i~iwd~ 563 (1093)
.+..+.|+|+...+++++...|+ .|.+||++.... ..++..|...|.++.|++.+ ++|++++. |+.|.+|+.
T Consensus 208 ~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgk----D~~ii~wN~ 283 (1049)
T KOG0307|consen 208 HCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGK----DNRIICWNP 283 (1049)
T ss_pred ceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccC----CCCeeEecC
Confidence 46788999886654444444444 499999987554 45677999999999999977 77788775 677999999
Q ss_pred CCCeeeeeeecccccCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCc
Q 001352 564 SEGAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQ 612 (1093)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~~~dg~i~iwd~~~~~ 612 (1093)
++++.+..+.... +.+..+.|+|... .+++++-||.|.|+.+.+..
T Consensus 284 ~tgEvl~~~p~~~---nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 284 NTGEVLGELPAQG---NWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCceEeeecCCCC---cceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 9999999988755 8899999999877 66678999999999987654
No 180
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=1e-17 Score=175.51 Aligned_cols=262 Identities=15% Similarity=0.198 Sum_probs=196.8
Q ss_pred eecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEcc-----CCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCC
Q 001352 392 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH-----GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 466 (1093)
Q Consensus 392 ~~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~-----~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~ 466 (1093)
.+..|.+.|++++|.|-...|++++.||++++|+++ ....+.++.++.+|.++|.|++.+++++ .+++|+.||
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg 366 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDG 366 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCc
Confidence 377799999999999999999999999999999993 3344677889999999999999999999 799999999
Q ss_pred cEEEEECCCC----------ceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC--ceE
Q 001352 467 TIKVWDAVTG----------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL--GCT 534 (1093)
Q Consensus 467 ~i~vwd~~~~----------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--~v~ 534 (1093)
+|+.|++... .....+.||.+.|+.++++..++ .|++++.||+++.|+...... .++..... --.
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 9999965421 23356789999999999987664 699999999999998766544 33333222 223
Q ss_pred EEEEccCC-CEEEEEecCCCCceeEEEEeCCCCeeeeeeecccc----cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001352 535 RMAYSANG-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL----QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 609 (1093)
Q Consensus 535 ~~~~s~d~-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~----~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~ 609 (1093)
++.+.... ...++... .+.-.+++...+.....+..... ....+..+..+|.....+++.+|+.|+++|..
T Consensus 444 svd~~ss~~a~~~~s~~----~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~ 519 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASFR----FGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNK 519 (577)
T ss_pred eEeeccchhHhhhhhcc----cccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccc
Confidence 44443322 12222111 12223344444444444432221 12357788899999999999999999999999
Q ss_pred CCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccc
Q 001352 610 KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVL 664 (1093)
Q Consensus 610 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 664 (1093)
++.++.....+ ...+.++++.|+|.+|++++.|+.+++|.+....++.....|
T Consensus 520 ~~~~l~s~~a~--~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 520 TGKILHSMVAH--KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred ccccchheeec--cceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 99999887765 456899999999999999999999999999877666554433
No 181
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=6.5e-17 Score=160.79 Aligned_cols=303 Identities=12% Similarity=0.108 Sum_probs=216.9
Q ss_pred HHHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEE-eeeeeeecccccceeeeeeecCCCCCeEEEE
Q 001352 326 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFI-RNFKVWDIGACSMLFKTALVRDPGVSVNRVV 404 (1093)
Q Consensus 326 ~~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 404 (1093)
-|...+.+|.+-|.++.||.+|+ +||+|+.|..+++|+++.--..++ +++. ..-..|...|.|++
T Consensus 47 ~~qKD~~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~~KPI~-------------~~~~~H~SNIF~L~ 112 (609)
T KOG4227|consen 47 FCQKDVREHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKTPKPIG-------------VMEHPHRSNIFSLE 112 (609)
T ss_pred hhhhhhhhhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcCCCCce-------------eccCccccceEEEE
Confidence 45667889999999999999998 699999999999999865332221 1111 11334668999999
Q ss_pred ECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCc-e--eEE
Q 001352 405 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-R--TYS 481 (1093)
Q Consensus 405 ~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~-~--~~~ 481 (1093)
|....++|.+|..+++|...|+++.+.+... .-....+.|..+..+|..+ .+++.+.++.|.+||..... . +..
T Consensus 113 F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~-~~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~ 189 (609)
T KOG4227|consen 113 FDLENRFLYSGERWGTVIKHDIETKQSIYVA-NENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVL 189 (609)
T ss_pred EccCCeeEecCCCcceeEeeecccceeeeee-cccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceee
Confidence 9999999999999999999999997655421 1112234899999999977 79999999999999987654 2 222
Q ss_pred eecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEE-------ecCCCCceEEEEEccCCCEEEEEecCCCC
Q 001352 482 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-------YDAPGLGCTRMAYSANGRRLFSCGTSKEG 554 (1093)
Q Consensus 482 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-------~~~~~~~v~~~~~s~d~~~l~~~~~~~~~ 554 (1093)
+........++.|+|... .+|++.+..+-+-+||.+....... +......-.++.|+|+|+.+++.-.
T Consensus 190 ~AN~~~~F~t~~F~P~~P-~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR---- 264 (609)
T KOG4227|consen 190 PANSGKNFYTAEFHPETP-ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR---- 264 (609)
T ss_pred ecCCCccceeeeecCCCc-eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc----
Confidence 333455667778877543 6888999999999999987554321 1111223467889999999987643
Q ss_pred ceeEEEEeCCCCeeeeeeecccc----cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-------------------
Q 001352 555 ESFLVEWNESEGAIKRTYQGLQL----QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV------------------- 611 (1093)
Q Consensus 555 ~~~i~iwd~~~~~~~~~~~~~~~----~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~------------------- 611 (1093)
...-.+||+.+..+...-..|.. ....+.+++|..+- .+++|+.+=.|++|.+...
T Consensus 265 ~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~ 343 (609)
T KOG4227|consen 265 GKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSE 343 (609)
T ss_pred cCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchh
Confidence 22345678776544322222221 11346778887654 4899999999999987531
Q ss_pred ----ceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcC
Q 001352 612 ----QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 653 (1093)
Q Consensus 612 ----~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 653 (1093)
+.+..+.+| ...++.+.|+|...+|++.+..+.++||...
T Consensus 344 ~~i~~~~~VLrGH--RSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 344 IFIEKELTVLRGH--RSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred heecceeEEEecc--cccccceeecCCcceEeccchhhheeccccc
Confidence 112334444 4457899999999999999999999999765
No 182
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=7.3e-18 Score=173.05 Aligned_cols=302 Identities=16% Similarity=0.229 Sum_probs=233.8
Q ss_pred HHHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEE
Q 001352 326 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 405 (1093)
Q Consensus 326 ~~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 405 (1093)
.+...|.+|.+-|..|.|...|. +|++|+.|..|.+||+.+++....+ ..||...|....|
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~f------------------~SGH~~NvfQaKF 193 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLSF------------------ESGHCNNVFQAKF 193 (559)
T ss_pred hhhhcccCCCCccceeeecccCc-eeeccCccceEEeehhhccCccccc------------------ccccccchhhhhc
Confidence 45567889999999999999998 6999999999999999998876531 5589999988889
Q ss_pred CC--CCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEe-
Q 001352 406 SP--DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF- 482 (1093)
Q Consensus 406 s~--dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~- 482 (1093)
-| +.+-+++++.||.|++=.+.....+.....+..|.++|.-++.-|+..+ .|.|++.|+.+.-.|+.++.....+
T Consensus 194 iP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~ 272 (559)
T KOG1334|consen 194 IPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFV 272 (559)
T ss_pred cCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceee
Confidence 88 4578999999999998876544444434467789999999999999887 7999999999999999887654433
Q ss_pred --ecCCC---CeEEeeecccCCccEEEEEecCCeEEEEEcCCCCce------EEe------cCCCCceEEEEEccCCCEE
Q 001352 483 --EGHGA---PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR------VDY------DAPGLGCTRMAYSANGRRL 545 (1093)
Q Consensus 483 --~~h~~---~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~------~~~------~~~~~~v~~~~~s~d~~~l 545 (1093)
..+.. ..++++..|.. ...+++++.|..+++||.+..... ..+ ....-.|++++|+.++.-+
T Consensus 273 cr~~~~~~~v~L~~Ia~~P~n-t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sEl 351 (559)
T KOG1334|consen 273 CREADEKERVGLYTIAVDPRN-TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSEL 351 (559)
T ss_pred eeccCCccceeeeeEecCCCC-ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccce
Confidence 22333 45677776653 358999999999999998653322 111 1223368999999777666
Q ss_pred EEEecCCCCceeEEEEeCCCCe------------e-eeeeecccccCCCeEEEE-EcCCCCEEEEEeCCCcEEEEECCCC
Q 001352 546 FSCGTSKEGESFLVEWNESEGA------------I-KRTYQGLQLQHNSVSVVH-FDTAKDQILAAGDDHVIKIWDMNKV 611 (1093)
Q Consensus 546 ~~~~~~~~~~~~i~iwd~~~~~------------~-~~~~~~~~~~~~~v~~v~-~~~~~~~l~~~~~dg~i~iwd~~~~ 611 (1093)
++... +..|+++....+. . .+.++||... ..|..+- |.|..+++++|+.-|.|.||+-.++
T Consensus 352 LaSYn----De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~-~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~ 426 (559)
T KOG1334|consen 352 LASYN----DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNS-RTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG 426 (559)
T ss_pred eeeec----ccceEEeccccccCCCCCCCcchhhccchhhcccccc-cccceeeeccCccceEEecCccceEEEEecchh
Confidence 65554 4458888543221 2 2347888732 2366665 5688899999999999999999999
Q ss_pred ceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001352 612 QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 655 (1093)
Q Consensus 612 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 655 (1093)
+.+..+.+..+ -|+|+.-+|--..||+.+-|..|+||...+.
T Consensus 427 eii~~MegDr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 427 EIIRFMEGDRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred HHHHHhhcccc--eEeccCCCCCCchhhccCCccceeeecCCcc
Confidence 99998887766 4899999999999999999999999987544
No 183
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.6e-16 Score=165.07 Aligned_cols=245 Identities=17% Similarity=0.168 Sum_probs=163.5
Q ss_pred EEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEe-ecCCCCeEEeeecccCCccEEEEEecCCeEEE
Q 001352 436 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSLCPHAKENIHFIFSISVDGKIKA 514 (1093)
Q Consensus 436 ~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~v 514 (1093)
.++.||++.|++++|+.||. +|++|+.|-.+.|||.-..+.++.+ .+|...|.++.|.|..+...+++|..|..|++
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~--lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGE--LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhccccceecceeecCCCC--EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 36889999999999999999 8999999999999999988888887 68999999999999999999999999999999
Q ss_pred EEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCC-CE
Q 001352 515 WLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQ 593 (1093)
Q Consensus 515 wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~~ 593 (1093)
+|+...+... .+ + ...+..+.+..|. ..|..++..|++ +.
T Consensus 122 fdl~~~~~~~-------------------------~d---~--------~~~~~~~~~~cht---~rVKria~~p~~Pht 162 (758)
T KOG1310|consen 122 FDLDSSKEGG-------------------------MD---H--------GMEETTRCWSCHT---DRVKRIATAPNGPHT 162 (758)
T ss_pred Eecccccccc-------------------------cc---c--------Cccchhhhhhhhh---hhhhheecCCCCCce
Confidence 9987532210 00 0 0011223334444 677888888888 67
Q ss_pred EEEEeCCCcEEEEECCCCceE-EE-------EecCCCCCCCceEEEec-CCCEEEEEECCCeEEEEEcCCC-ceeeecc-
Q 001352 594 ILAAGDDHVIKIWDMNKVQLL-TT-------IDAGGGLPENPRICFNK-NGTLLAVIANENRIKILETPES-NSVDAAG- 662 (1093)
Q Consensus 594 l~~~~~dg~i~iwd~~~~~~~-~~-------~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~- 662 (1093)
+.++++||+++-+|++....- .. .......-...++..+| +..+|++|+.|-..++||.+.. +....-.
T Consensus 163 fwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~ 242 (758)
T KOG1310|consen 163 FWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGT 242 (758)
T ss_pred EEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCcc
Confidence 888999999999999762211 00 01111122356888998 5678999999999999994321 1111111
Q ss_pred ---cccccceeee-ecCCCceeeeeccC------CceEecCCCCCCCccceeecccccceecceeeccCcccc
Q 001352 663 ---VLSDNLRKLS-VNPISTVTGAGIAN------GSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ 725 (1093)
Q Consensus 663 ---~~~~~i~~~~-~~~~~~~~~~~~~~------~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~ 725 (1093)
.......|+. |+|......-+... ..+.| +|+|.-++..-....|.++++...+.....
T Consensus 243 ~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf----npNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 243 MNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF----NPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred ccCCCCcccchhheecCccccCcccccccceeeeEEEEE----CCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 1111122222 22222211111011 13344 677877777766677888887755544333
No 184
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.74 E-value=4.3e-16 Score=149.58 Aligned_cols=282 Identities=18% Similarity=0.286 Sum_probs=202.2
Q ss_pred Cceeeeec--CCCceEEEEEcc----CCcEEEEec--CCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC
Q 001352 337 SPMSMDFH--PVQHTLLLVGTN----VGDTGLWDV--NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 408 (1093)
Q Consensus 337 ~V~~~~~s--pdg~~llasg~~----dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d 408 (1093)
.+.++.|| |+.+..||.|+. .+.|.|-.+ ++++.+...+ ..|.-+++.+.|.||
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~------------------fd~~YP~tK~~wiPd 107 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN------------------FDHPYPVTKLMWIPD 107 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC------------------CCCCCCccceEecCC
Confidence 67788888 666667999885 355555544 4455444322 248899999999998
Q ss_pred C-----CEEEEEEcCCEEEEEEccCCC-cccceEEe-----ccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCc
Q 001352 409 G-----SLLGVAYSKHIVQLYAYHGGS-DARQQLEI-----DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 477 (1093)
Q Consensus 409 g-----~~las~~~d~~i~iwd~~~~~-~~~~~~~~-----~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~ 477 (1093)
. ++||+++ | .+++|.+...+ .+.....+ ..+..++++..|+.-... ++.+++-|-+..|||+++|.
T Consensus 108 ~~g~~pdlLATs~-D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~-~igtSSiDTTCTiWdie~~~ 184 (364)
T KOG0290|consen 108 SKGVYPDLLATSS-D-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN-LIGTSSIDTTCTIWDIETGV 184 (364)
T ss_pred ccccCcchhhccc-C-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc-eeEeecccCeEEEEEEeecc
Confidence 7 3566653 3 49999998422 12111112 246679999999876655 89999999999999999973
Q ss_pred e---eEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceE-EecCC--CCceEEEEEccC-CCEEEEEec
Q 001352 478 R---TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAP--GLGCTRMAYSAN-GRRLFSCGT 550 (1093)
Q Consensus 478 ~---~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~--~~~v~~~~~s~d-~~~l~~~~~ 550 (1093)
. ...+-.|...|..++|.. +....+++.+.||.||+||++..+... .++.+ ..+...++|++. -+++++...
T Consensus 185 ~~~vkTQLIAHDKEV~DIaf~~-~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~ 263 (364)
T KOG0290|consen 185 SGTVKTQLIAHDKEVYDIAFLK-GSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAM 263 (364)
T ss_pred ccceeeEEEecCcceeEEEecc-CccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhc
Confidence 3 456778999999999975 345789999999999999999866433 33333 346778888874 566766554
Q ss_pred CCCCceeEEEEeCCC-CeeeeeeecccccCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCce------EEEEecCCC
Q 001352 551 SKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQL------LTTIDAGGG 622 (1093)
Q Consensus 551 ~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~ 622 (1093)
+ ...|.+.|++. ...+..+++|. ..|+.++|.|.. ..|.+++.|..+.+||+...-. +.... .
T Consensus 264 d---S~~V~iLDiR~P~tpva~L~~H~---a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~---a 334 (364)
T KOG0290|consen 264 D---SNKVVILDIRVPCTPVARLRNHQ---ASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT---A 334 (364)
T ss_pred C---CceEEEEEecCCCcceehhhcCc---ccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh---c
Confidence 3 34588999886 45678888888 999999999975 5778899999999999975332 11111 2
Q ss_pred CCCCceEEEec-CCCEEEEEECCCeEEEE
Q 001352 623 LPENPRICFNK-NGTLLAVIANENRIKIL 650 (1093)
Q Consensus 623 ~~~v~~v~~s~-~~~~l~~~~~dg~i~iw 650 (1093)
...|+.+.|++ .+..++++.. +.+.+.
T Consensus 335 ~~EVNqi~Ws~~~~Dwiai~~~-kkleiL 362 (364)
T KOG0290|consen 335 GGEVNQIQWSSSQPDWIAICFG-KKLEIL 362 (364)
T ss_pred cceeeeeeecccCCCEEEEEec-CeeeEE
Confidence 34689999996 5667777664 455543
No 185
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.9e-15 Score=140.15 Aligned_cols=286 Identities=12% Similarity=0.142 Sum_probs=197.2
Q ss_pred ceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCC
Q 001352 737 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 816 (1093)
Q Consensus 737 ~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 816 (1093)
.|.+-+++|.+++++++..+|.+.+..+..-.. +... ......+. +..+|..++..++|. ..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s---~sa~---------~~gk~~iv----~eqahdgpiy~~~f~--d~ 73 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDS---GSAE---------PPGKLKIV----PEQAHDGPIYYLAFH--DD 73 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhc---cccC---------CCCCccee----eccccCCCeeeeeee--hh
Confidence 345567899999999999999999998764321 0000 01111111 123699999999997 56
Q ss_pred EEEEEeCCeEEEEEccCcee------EEEEC-------CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeec
Q 001352 817 YLFSASGGVISLYIVMTFKT------ILTIM-------PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 883 (1093)
Q Consensus 817 ~la~~~dg~i~iwd~~~~~~------~~~~~-------~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l 883 (1093)
+|++++||.|+-|....... ..... ..-..|.++-+.|..+.+ +.++.|+.++-||+++|+....+
T Consensus 74 ~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi-~~AgGD~~~y~~dlE~G~i~r~~ 152 (325)
T KOG0649|consen 74 FLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSI-LFAGGDGVIYQVDLEDGRIQREY 152 (325)
T ss_pred heeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcE-EEecCCeEEEEEEecCCEEEEEE
Confidence 78888899999998753221 11111 123578999999944544 45558999999999999999999
Q ss_pred ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcc----cCCCCceEEEEccCCCEEEEEeCCe
Q 001352 884 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM----TLAPSETHIQFHKDQTRFLLVHETH 959 (1093)
Q Consensus 884 ~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~s~dg~~l~~~~d~~ 959 (1093)
+||++-|.+++--.....++||++||++||||..+++... .+....... ..+.+| .+..-+..+|++|....
T Consensus 153 rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~--~ie~yk~~~~lRp~~g~wi--gala~~edWlvCGgGp~ 228 (325)
T KOG0649|consen 153 RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVS--MIEPYKNPNLLRPDWGKWI--GALAVNEDWLVCGGGPK 228 (325)
T ss_pred cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeE--EeccccChhhcCcccCcee--EEEeccCceEEecCCCc
Confidence 9999999999985555678999999999999999976444 222211111 111233 44556677899988889
Q ss_pred EEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCccceeEEEe
Q 001352 960 LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAA 1039 (1093)
Q Consensus 960 i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 1039 (1093)
+.+|.+.+.++...+. -.+++..+.|-.| .+++++..+.|.-|.+. |.+...+. .. ....++.+...
T Consensus 229 lslwhLrsse~t~vfp--ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip------~~--s~~c~s~s~~~ 295 (325)
T KOG0649|consen 229 LSLWHLRSSESTCVFP--IPARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIP------VE--STACYSASWQT 295 (325)
T ss_pred eeEEeccCCCceEEEe--cccceeEeeeecc--eEEEeccccceeeeeec-cEEEEecc------CC--ccceeeecccC
Confidence 9999999998887644 3567888888654 57778888899999885 44443332 11 12234444555
Q ss_pred CCCCCCEEEEEeCCCcEEEEe
Q 001352 1040 HPLKPTQFAVGLTNGEVYVIE 1060 (1093)
Q Consensus 1040 ~p~d~~~l~~~~~dg~v~~w~ 1060 (1093)
+| -+.+.+++-...+.++.
T Consensus 296 ~p--~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 296 SP--IKFISIAGFSNKLHILK 314 (325)
T ss_pred Cc--eEEEEecccceeeeeee
Confidence 66 36777777778887764
No 186
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.74 E-value=2e-17 Score=156.44 Aligned_cols=249 Identities=19% Similarity=0.225 Sum_probs=191.0
Q ss_pred HhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeec-CCCCCeEEEEECC
Q 001352 329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVR-DPGVSVNRVVWSP 407 (1093)
Q Consensus 329 ~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~s~ 407 (1093)
..|++|.+.|+++.|-.+++ |.+|..-|.|++|++.+.+.+.. +. .|...|+.+.--|
T Consensus 8 fvLRp~~~~v~s~~fqa~~r--L~sg~~~G~V~~w~lqt~r~~~~-------------------~r~~g~~~it~lq~~p 66 (323)
T KOG0322|consen 8 FVLRPHSSSVTSVLFQANER--LMSGLSVGIVKMWVLQTERDLPL-------------------IRLFGRLFITNLQSIP 66 (323)
T ss_pred eEeccccchheehhhccchh--hhcccccceEEEEEeecCccchh-------------------hhhhccceeeceeecC
Confidence 45778999999999999996 78899999999999998876643 23 3677888888888
Q ss_pred CCCEEEEEEcCCEEEEEEccCCCccc------------------------ceEEe-------------------------
Q 001352 408 DGSLLGVAYSKHIVQLYAYHGGSDAR------------------------QQLEI------------------------- 438 (1093)
Q Consensus 408 dg~~las~~~d~~i~iwd~~~~~~~~------------------------~~~~~------------------------- 438 (1093)
+ ..|.+-+.|..+.+|++..+..+. +....
T Consensus 67 ~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~ 145 (323)
T KOG0322|consen 67 N-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDS 145 (323)
T ss_pred C-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCch
Confidence 7 566677889999999886522100 00000
Q ss_pred -ccccccEEEEEee-CCCCcEEEEEEcCCCcEEEEECCCCcee----------EEeecCCCCeEEeeecccCCccEEEEE
Q 001352 439 -DAHVGNVNDLAFS-APCKQISVITCGDDKTIKVWDAVTGSRT----------YSFEGHGAPVYSLCPHAKENIHFIFSI 506 (1093)
Q Consensus 439 -~~h~~~v~~~~~s-~d~~~l~l~s~~~d~~i~vwd~~~~~~~----------~~~~~h~~~v~~~~~~~~~~~~~l~s~ 506 (1093)
.+..+.+.|..+. .++++++++.|..+|.+.+||+.++..+ .....|..+|.++.+.+.-+ .=++|
T Consensus 146 ~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~--rGisg 223 (323)
T KOG0322|consen 146 ERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCD--RGISG 223 (323)
T ss_pred hccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhc--CCcCC
Confidence 0112345555532 3466668889999999999999998433 34456999999998865433 34677
Q ss_pred ecCCeEEEEEcCCCCc----eEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCe
Q 001352 507 SVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV 582 (1093)
Q Consensus 507 ~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v 582 (1093)
+.+..+..|.++.... ..........+..+.+-||++.+++++. |++|++|+-++.+++..++.|. ..|
T Consensus 224 ga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGW----D~RiRVyswrtl~pLAVLkyHs---agv 296 (323)
T KOG0322|consen 224 GADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGW----DHRIRVYSWRTLNPLAVLKYHS---AGV 296 (323)
T ss_pred CccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeeccc----CCcEEEEEeccCCchhhhhhhh---cce
Confidence 7778888898875422 2234445567889999999999999998 6779999999999999999988 999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001352 583 SVVHFDTAKDQILAAGDDHVIKIWDM 608 (1093)
Q Consensus 583 ~~v~~~~~~~~l~~~~~dg~i~iwd~ 608 (1093)
.+++|+|+.+.+++++.|++|.+|++
T Consensus 297 n~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 297 NAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eEEEeCCCCchhhhccCCceEEeeec
Confidence 99999999999999999999999986
No 187
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.74 E-value=1e-14 Score=160.76 Aligned_cols=198 Identities=12% Similarity=0.144 Sum_probs=128.2
Q ss_pred eEEEEccCCCEEEEEe--CCeEEEEEccC-c---eeEEEECCCCCCeEEEEEcCCCCCEEEE-EeCCCeEEEEEcCCcce
Q 001352 807 PCFALSKNDAYLFSAS--GGVISLYIVMT-F---KTILTIMPPSPTATSLAFNPHDNNVIAI-GMDDSTILIYNARSSEV 879 (1093)
Q Consensus 807 ~~l~~s~dg~~la~~~--dg~i~iwd~~~-~---~~~~~~~~~~~~i~~l~~s~~d~~~las-g~~dg~i~iwd~~~~~~ 879 (1093)
..++++|+++++++++ ++.|.+|++.+ + +.+..+. +.....+++++| +++++++ ...++.|.+||+.+...
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~ 160 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGH 160 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCc
Confidence 3567777777777665 46777777753 2 1222222 223467789999 7777754 55669999999986332
Q ss_pred ee-------ecccccCCeEEEEEeCCCCEEEEEeC-CCcEEEEeCCC--CceeeeeeeecCCCcccCCCCceEEEEccCC
Q 001352 880 IS-------KLEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDG--WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ 949 (1093)
Q Consensus 880 ~~-------~l~~h~~~V~~l~~s~dg~~l~s~s~-dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 949 (1093)
+. .... ......++|+|||++++++.. +++|.+|+++. ++......+...............+.|+|||
T Consensus 161 l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg 239 (330)
T PRK11028 161 LVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG 239 (330)
T ss_pred ccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence 21 1111 234678999999999988776 89999999974 3322222222211111111134468999999
Q ss_pred CEEEEE--eCCeEEEEEcCCcc----eeeeeecCCCCCEEEEEEccCCCEEEEEeC-CCcEEEEEcC
Q 001352 950 TRFLLV--HETHLAIYEAEELT----CLKQWFPISSVPISQATFSCDCRMVFTSFV-DGTLSIHEAS 1009 (1093)
Q Consensus 950 ~~l~~~--~d~~i~vwd~~~~~----~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~-dg~v~vwd~~ 1009 (1093)
++++++ .++.|.+|++.... .+.....+ .....+.|+|||++|+++.. +++|.+|+++
T Consensus 240 ~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~--~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 240 RHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE--TQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc--ccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 999986 45789999986433 22222221 24457899999999998775 8899999875
No 188
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=4.5e-17 Score=170.80 Aligned_cols=269 Identities=14% Similarity=0.193 Sum_probs=190.9
Q ss_pred HhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC
Q 001352 329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 408 (1093)
Q Consensus 329 ~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d 408 (1093)
.+|..|.+.|..++|.|... .|++++.||++.+|++.....-.... .-+...+.+|.++|.|++++++
T Consensus 288 ~tl~s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~~~-----------~epi~tfraH~gPVl~v~v~~n 355 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAEKD-----------VEPILTFRAHEGPVLCVVVPSN 355 (577)
T ss_pred eeeecchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCccccc-----------eeeeEEEecccCceEEEEecCC
Confidence 37788999999999999988 59999999999999994311111100 1112238899999999999999
Q ss_pred CCEEEEEEcCCEEEEEEccCCC-------cccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEE
Q 001352 409 GSLLGVAYSKHIVQLYAYHGGS-------DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 481 (1093)
Q Consensus 409 g~~las~~~d~~i~iwd~~~~~-------~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~ 481 (1093)
++.+.+|+.||+|+.|++.... .......+.||.+.|+.+++|+... .|++++.||+++.|+...... .+
T Consensus 356 ~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~-~~ 432 (577)
T KOG0642|consen 356 GEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP-CT 432 (577)
T ss_pred ceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-cc
Confidence 9999999999999999654211 1112235779999999999999888 699999999999999766655 34
Q ss_pred eecCC--CCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC-------CCceEEEEEccCCCEEEEEecCC
Q 001352 482 FEGHG--APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-------GLGCTRMAYSANGRRLFSCGTSK 552 (1093)
Q Consensus 482 ~~~h~--~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-------~~~v~~~~~s~d~~~l~~~~~~~ 552 (1093)
+.... +.-.++.+.... -...++...-+.--+.++........+... ...+..+...|.+...+++..
T Consensus 433 f~~~~e~g~Plsvd~~ss~-~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he-- 509 (577)
T KOG0642|consen 433 FGEPKEHGYPLSVDRTSSR-PAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE-- 509 (577)
T ss_pred cCCccccCCcceEeeccch-hHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc--
Confidence 43222 222233332111 011222222222223333333333332211 124667788888888888775
Q ss_pred CCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecC
Q 001352 553 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 620 (1093)
Q Consensus 553 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 620 (1093)
+..|+++|..++.++.....|. ..+.++++.|+|.++++++.|+.+++|.+....++.....+
T Consensus 510 --d~~Ir~~dn~~~~~l~s~~a~~---~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 510 --DRSIRFFDNKTGKILHSMVAHK---DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred --CCceecccccccccchheeecc---ceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 6779999999999999888887 89999999999999999999999999999877776555443
No 189
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=5.1e-16 Score=154.47 Aligned_cols=294 Identities=11% Similarity=0.080 Sum_probs=207.9
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCC---CcccceEEe-ccccccEEEEEeeCCCCcEEEEEEcCCCcE
Q 001352 393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG---SDARQQLEI-DAHVGNVNDLAFSAPCKQISVITCGDDKTI 468 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~---~~~~~~~~~-~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i 468 (1093)
+.+|.+.|.++.||.++++||+|+.|..+++|+++.. +..+++... ..|...|.|++|...+. ++++|+.+++|
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~--~~~SG~~~~~V 129 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR--FLYSGERWGTV 129 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe--eEecCCCccee
Confidence 6789999999999999999999999999999998632 111222122 23567999999998887 89999999999
Q ss_pred EEEECCCCceeEEeec--CCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCc---eEEecCCCCceEEEEEccCCC
Q 001352 469 KVWDAVTGSRTYSFEG--HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANGR 543 (1093)
Q Consensus 469 ~vwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~v~~~~~s~d~~ 543 (1093)
...|+++.+.+..+.. ..+.|+.+..+|.. ..+++.+.+|.|.+||.+.... .......+.....+.|+|...
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D--N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P 207 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTD--NTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP 207 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCC--ceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence 9999999999988752 23589999988773 5899999999999999986552 223333445678899999776
Q ss_pred EEEEEecCCCCceeEEEEeCCCCee-eee---eecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEec
Q 001352 544 RLFSCGTSKEGESFLVEWNESEGAI-KRT---YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 619 (1093)
Q Consensus 544 ~l~~~~~~~~~~~~i~iwd~~~~~~-~~~---~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 619 (1093)
.|+...... +-+.+||.+.... +.. +.+.......-.++.|+|+|+++++--....-.+||+-+.++......
T Consensus 208 ~Li~~~~~~---~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D 284 (609)
T KOG4227|consen 208 ALILVNSET---GGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD 284 (609)
T ss_pred eeEEecccc---CCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc
Confidence 665544333 3388999875432 211 222221122346788999999999877666667888877554322222
Q ss_pred CCC-----CCCCceEEEecCCCEEEEEECCCeEEEEEcCCC-----------------------ceeeecccccccceee
Q 001352 620 GGG-----LPENPRICFNKNGTLLAVIANENRIKILETPES-----------------------NSVDAAGVLSDNLRKL 671 (1093)
Q Consensus 620 ~~~-----~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~-----------------------~~~~~~~~~~~~i~~~ 671 (1093)
|.. ...+.+++|-.|- .+++|+++=.|++|.+... ..+..+++|...++.+
T Consensus 285 ~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQV 363 (609)
T KOG4227|consen 285 HNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQV 363 (609)
T ss_pred CCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccce
Confidence 111 1235667776554 4999999999999998632 1234455666666555
Q ss_pred eecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecce
Q 001352 672 SVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKP 716 (1093)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~ 716 (1093)
.|+ +...++.+.+-.+.+++|.-
T Consensus 364 RF~----------------------~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 364 RFS----------------------QHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred eec----------------------CCcceEeccchhhheecccc
Confidence 554 55677788888899999973
No 190
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.73 E-value=1.2e-14 Score=145.01 Aligned_cols=242 Identities=11% Similarity=0.147 Sum_probs=187.7
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCC
Q 001352 397 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 476 (1093)
Q Consensus 397 ~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~ 476 (1093)
...+..+.|+.|...|..|+.|| -++|..+.-.... ........|..+-|+..= +.+|+...-..+++.+.+.+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~---~~~~~~~~IvEmLFSSSL--vaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF---SKDTEGVSIVEMLFSSSL--VAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh---cccCCCeEEEEeecccce--eEEEecCCCceEEEEEcccC
Confidence 34577788999999999999999 7888887643211 222233356666676542 13344433345999999998
Q ss_pred ceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC---CCceEEEEEccCCCEEEEEecCCC
Q 001352 477 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP---GLGCTRMAYSANGRRLFSCGTSKE 553 (1093)
Q Consensus 477 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~---~~~v~~~~~s~d~~~l~~~~~~~~ 553 (1093)
..+..+. ...+|.++.++. +.|+++-.+. |.|||+++.+.+.++... ...+.++++++.+.+++.-+...
T Consensus 79 ~~ICe~~-fpt~IL~VrmNr----~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t- 151 (391)
T KOG2110|consen 79 TTICEIF-FPTSILAVRMNR----KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTT- 151 (391)
T ss_pred ceEEEEe-cCCceEEEEEcc----ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCC-
Confidence 8888775 667788888743 4566666555 999999999888766544 33566666667777888765422
Q ss_pred CceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCc-EEEEECCCCceEEEEecCCCCCCCceEEEe
Q 001352 554 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPENPRICFN 632 (1093)
Q Consensus 554 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 632 (1093)
.+.|++||..+-+.+..+..|. +.+.+++|+++|..++++++.|+ |||+.+.+|+.+..+........|.+++|+
T Consensus 152 -~GdV~l~d~~nl~~v~~I~aH~---~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs 227 (391)
T KOG2110|consen 152 -SGDVVLFDTINLQPVNTINAHK---GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFS 227 (391)
T ss_pred -CceEEEEEcccceeeeEEEecC---CceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEEC
Confidence 5669999999999999999888 99999999999999999999987 689999999999999876656678999999
Q ss_pred cCCCEEEEEECCCeEEEEEcCCC
Q 001352 633 KNGTLLAVIANENRIKILETPES 655 (1093)
Q Consensus 633 ~~~~~l~~~~~dg~i~iw~~~~~ 655 (1093)
|++.+|++.+..++|.++.+...
T Consensus 228 ~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 228 PDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred CCCCeEEEecCCCeEEEEEeccc
Confidence 99999999999999999998754
No 191
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=2.3e-16 Score=155.25 Aligned_cols=292 Identities=13% Similarity=0.173 Sum_probs=203.4
Q ss_pred EEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEec--CCC-CceE
Q 001352 458 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APG-LGCT 534 (1093)
Q Consensus 458 ~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~-~~v~ 534 (1093)
.++++-..|+|++||..+|+.+..++++...++.+.|........+.+++.||+|++||++.......+. .+. .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 6788888999999999999999999999999999999875566789999999999999999877654433 333 3566
Q ss_pred EEEEccCCCEEEEEecCCCCceeEEEEeCCCCee-eeeee-cccccCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCC
Q 001352 535 RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI-KRTYQ-GLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKV 611 (1093)
Q Consensus 535 ~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~-~~~~~-~~~~~~~~v~~v~~~~~~-~~l~~~~~dg~i~iwd~~~~ 611 (1093)
+++..-.++.++++..-...+..|.+||.+..+. ++.+. .|. +.|+++.|+|.. +.|++||.||-|.+||++..
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~---DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHN---DDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhcc---CcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 7777668888888876666688899999998766 55543 344 899999999975 67888999999999999764
Q ss_pred c----eEEEEecCCCCCCCceEEEecCC-CEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccC
Q 001352 612 Q----LLTTIDAGGGLPENPRICFNKNG-TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIAN 686 (1093)
Q Consensus 612 ~----~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 686 (1093)
. ++.++.. ...|.++.|..++ +.+.+.+..+++.+|+++.+.....+.......... .. -..
T Consensus 199 ~EeDaL~~viN~---~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~-r~---------~~~ 265 (376)
T KOG1188|consen 199 NEEDALLHVINH---GSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDL-RK---------EDN 265 (376)
T ss_pred cchhhHHHhhcc---cceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhH-Hh---------hhh
Confidence 2 2333332 2458889998876 458888899999999999876444333221100000 00 000
Q ss_pred CceEecCCCCCCCccceeecc-cccceecceeeccCc-cccccccCccccccceEEEEeecCCceEEEeeccceeEEeee
Q 001352 687 GSVSVNEDPKEDVKPEISVEA-ENKSEVEKPLFARPS-ECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 764 (1093)
Q Consensus 687 ~~~~~~~~~s~d~~~l~s~~~-d~~i~~w~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~ 764 (1093)
....++.....+....+.++. -+...++-+....+. ..........+|..-|.++.|...+..+.+++.||.+.+|..
T Consensus 266 ~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 266 CDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred hhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 011112211233344444433 566666655432221 222333344457777888999989999999999999999985
Q ss_pred c
Q 001352 765 P 765 (1093)
Q Consensus 765 ~ 765 (1093)
+
T Consensus 346 ~ 346 (376)
T KOG1188|consen 346 E 346 (376)
T ss_pred C
Confidence 3
No 192
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=3.4e-15 Score=139.61 Aligned_cols=281 Identities=16% Similarity=0.197 Sum_probs=193.7
Q ss_pred CceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEE
Q 001352 337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 416 (1093)
Q Consensus 337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~ 416 (1093)
.|.+-++||.+++ |+.|..+|+|.+..+++-..-... .....+.....+|.++|..++|. ..+|++|+
T Consensus 12 tvf~qa~sp~~~~-l~agn~~G~iav~sl~sl~s~sa~---------~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g 79 (325)
T KOG0649|consen 12 TVFAQAISPSKQY-LFAGNLFGDIAVLSLKSLDSGSAE---------PPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG 79 (325)
T ss_pred HHHHHhhCCcceE-EEEecCCCeEEEEEehhhhccccC---------CCCCcceeeccccCCCeeeeeee--hhheeecc
Confidence 6777789999985 899999999999988642111000 00011111247899999999998 55777775
Q ss_pred cCCEEEEEEccCCCc---ccceEE--ecccc-----ccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCC
Q 001352 417 SKHIVQLYAYHGGSD---ARQQLE--IDAHV-----GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 486 (1093)
Q Consensus 417 ~d~~i~iwd~~~~~~---~~~~~~--~~~h~-----~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~ 486 (1093)
||.|+=|.+..... .+...+ ...|. -.|+++...|..+ -+++++.|+.++-||+++|+..++++||+
T Consensus 80 -dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~rGHt 156 (325)
T KOG0649|consen 80 -DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYRGHT 156 (325)
T ss_pred -CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEcCCc
Confidence 59999998864322 111101 11233 2588899998877 46666689999999999999999999999
Q ss_pred CCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC----------CceEEEEEccCCCEEEEEecCCCCce
Q 001352 487 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG----------LGCTRMAYSANGRRLFSCGTSKEGES 556 (1093)
Q Consensus 487 ~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~----------~~v~~~~~s~d~~~l~~~~~~~~~~~ 556 (1093)
..|.++.-.. ....+++|+.||++|+||.++.+....+..-. ..|.+ ..-+..++++|+. .
T Consensus 157 DYvH~vv~R~--~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wiga--la~~edWlvCGgG-----p 227 (325)
T KOG0649|consen 157 DYVHSVVGRN--ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGA--LAVNEDWLVCGGG-----P 227 (325)
T ss_pred ceeeeeeecc--cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEE--EeccCceEEecCC-----C
Confidence 9999998632 22479999999999999999988877554321 13444 4456778888763 3
Q ss_pred eEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecC-C
Q 001352 557 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN-G 635 (1093)
Q Consensus 557 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~-~ 635 (1093)
.+.+|++++.++..++.-. .++..+.|.. ..++++++.+.|.-|.+. |.+...++...+ ...+..|+-. -
T Consensus 228 ~lslwhLrsse~t~vfpip----a~v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~--~c~s~s~~~~p~ 298 (325)
T KOG0649|consen 228 KLSLWHLRSSESTCVFPIP----ARVHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQANIPVEST--ACYSASWQTSPI 298 (325)
T ss_pred ceeEEeccCCCceEEEecc----cceeEeeeec--ceEEEeccccceeeeeec-cEEEEeccCCcc--ceeeecccCCce
Confidence 4999999999988888763 4778888864 578888888889999874 444444443322 2444444432 2
Q ss_pred CEEEEEECCCeEEEE
Q 001352 636 TLLAVIANENRIKIL 650 (1093)
Q Consensus 636 ~~l~~~~~dg~i~iw 650 (1093)
+++-.++..+.+.|+
T Consensus 299 k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 299 KFISIAGFSNKLHIL 313 (325)
T ss_pred EEEEecccceeeeee
Confidence 344455556666654
No 193
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.72 E-value=2.2e-17 Score=179.67 Aligned_cols=288 Identities=15% Similarity=0.247 Sum_probs=226.3
Q ss_pred eeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCe
Q 001352 567 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 646 (1093)
Q Consensus 567 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 646 (1093)
+.++.+.+|. ..|+|+.|...|.++++|+.|..++||..+++.++....+|.+ .++.++.+.+..++++++.|..
T Consensus 181 k~ikrLlgH~---naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~--ditdlavs~~n~~iaaaS~D~v 255 (1113)
T KOG0644|consen 181 KNIKRLLGHR---NAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSG--DITDLAVSSNNTMIAAASNDKV 255 (1113)
T ss_pred HHHHHHHhhh---hheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCcc--ccchhccchhhhhhhhcccCce
Confidence 4455666776 8999999999999999999999999999999999999987754 6999999999999999999999
Q ss_pred EEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccc
Q 001352 647 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 726 (1093)
Q Consensus 647 i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~ 726 (1093)
|++|.+..+.++..+++|.+.|++++|+|. .+.+.||++++||.... + ....
T Consensus 256 IrvWrl~~~~pvsvLrghtgavtaiafsP~--------------------------~sss~dgt~~~wd~r~~-~-~~y~ 307 (1113)
T KOG0644|consen 256 IRVWRLPDGAPVSVLRGHTGAVTAIAFSPR--------------------------ASSSDDGTCRIWDARLE-P-RIYV 307 (1113)
T ss_pred EEEEecCCCchHHHHhccccceeeeccCcc--------------------------ccCCCCCceEecccccc-c-cccC
Confidence 999999999999999999999999999873 25677899999996611 0 0111
Q ss_pred cccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCe
Q 001352 727 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 806 (1093)
Q Consensus 727 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 806 (1093)
-.-........+.++.|..++..+++++.++....|.++... | +...+
T Consensus 308 prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~---------------~-----------------~~~~l 355 (1113)
T KOG0644|consen 308 PRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLA---------------W-----------------RSNLL 355 (1113)
T ss_pred CCCCCcccccceeeeeccccccccccccCCcccccchhhHhh---------------h-----------------hccce
Confidence 111112234567788888999999999999888887654321 1 11222
Q ss_pred eEEEEccCC-CEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeec-
Q 001352 807 PCFALSKND-AYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL- 883 (1093)
Q Consensus 807 ~~l~~s~dg-~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l- 883 (1093)
.-+.++.|- .+.+++- +-.+++|++.+|...+.+.+|...+..+.++|.+.+...+++.||...|||+-.|..++..
T Consensus 356 if~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~ 435 (1113)
T KOG0644|consen 356 IFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF 435 (1113)
T ss_pred EEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeee
Confidence 222222222 3334443 5779999999999999999999999999999988888889999999999999988776554
Q ss_pred ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc
Q 001352 884 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG 920 (1093)
Q Consensus 884 ~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~ 920 (1093)
.+| +.+..-+||+||+.++....-|.+.|.....++
T Consensus 436 ~gh-~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 436 IGH-GKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred ccc-ceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 455 557778999999999998888999998775543
No 194
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.72 E-value=8.2e-16 Score=147.46 Aligned_cols=260 Identities=17% Similarity=0.230 Sum_probs=185.2
Q ss_pred HhhccCCCCceeeeecCCCceEEEEEccC-------CcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeE
Q 001352 329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNV-------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 401 (1093)
Q Consensus 329 ~~l~~h~~~V~~~~~spdg~~llasg~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 401 (1093)
.+|..|.++|+.++-+|-.+++|+++..+ -.+.||.+........ ...|+ | -..+-..+-+.|.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~--~~tlE---~----v~~Ldteavg~i~ 127 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSN--SSTLE---C----VASLDTEAVGKIN 127 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccc--cchhh---H----hhcCCHHHhCcee
Confidence 45667889999999999988899987653 2367887754221100 00000 0 0011124556999
Q ss_pred EEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEE---eccccccEEEEEeeC--CCCcEEEEEEcCCCcEEEEECCCC
Q 001352 402 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLE---IDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTG 476 (1093)
Q Consensus 402 ~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~---~~~h~~~v~~~~~s~--d~~~l~l~s~~~d~~i~vwd~~~~ 476 (1093)
|+.|.|++..||+-. |..|.+|++..+..+..... -.+|....++-+|+| ||. .+++.+ |+++..||+++.
T Consensus 128 cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn--qv~tt~-d~tl~~~D~RT~ 203 (370)
T KOG1007|consen 128 CVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN--QVATTS-DSTLQFWDLRTM 203 (370)
T ss_pred eEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc--eEEEeC-CCcEEEEEccch
Confidence 999999999999876 77799999998765321111 123566788999999 565 455554 899999999998
Q ss_pred ceeEEe-ecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCC-ceEEecCCCCceEEEEEccCCCEEE-EEecCCC
Q 001352 477 SRTYSF-EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLF-SCGTSKE 553 (1093)
Q Consensus 477 ~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~s~d~~~l~-~~~~~~~ 553 (1093)
++...+ ..|...|..+.|+|.. ..+|++++.||.|++||.+..+ .+..+.+|...+.++.|+|.-..|+ +++.
T Consensus 204 ~~~~sI~dAHgq~vrdlDfNpnk-q~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~S--- 279 (370)
T KOG1007|consen 204 KKNNSIEDAHGQRVRDLDFNPNK-QHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGS--- 279 (370)
T ss_pred hhhcchhhhhcceeeeccCCCCc-eEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCC---
Confidence 888777 4688999999998764 3689999999999999998755 4668889999999999999765554 4443
Q ss_pred CceeEEEEeCCCCe-----------------------------eeeeeecccccCCCeEEEEEcCCCCEEEE-EeCCCcE
Q 001352 554 GESFLVEWNESEGA-----------------------------IKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVI 603 (1093)
Q Consensus 554 ~~~~i~iwd~~~~~-----------------------------~~~~~~~~~~~~~~v~~v~~~~~~~~l~~-~~~dg~i 603 (1093)
+..|.+|...+-. .+.++..| ++.|++++|+....++++ -+.||.+
T Consensus 280 -Ds~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydeh---EDSVY~~aWSsadPWiFASLSYDGRv 355 (370)
T KOG1007|consen 280 -DSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEH---EDSVYALAWSSADPWIFASLSYDGRV 355 (370)
T ss_pred -CceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccc---ccceEEEeeccCCCeeEEEeccCceE
Confidence 5668777543211 12234444 489999999988887765 7899998
Q ss_pred EEEECC
Q 001352 604 KIWDMN 609 (1093)
Q Consensus 604 ~iwd~~ 609 (1093)
.|=.+.
T Consensus 356 iIs~V~ 361 (370)
T KOG1007|consen 356 IISSVP 361 (370)
T ss_pred EeecCC
Confidence 876543
No 195
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.72 E-value=1.3e-15 Score=146.08 Aligned_cols=182 Identities=18% Similarity=0.240 Sum_probs=129.3
Q ss_pred eeEEEEcc--CCCEEEEEeCCeEEEEEccCceeEEEEC-CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc-ceee
Q 001352 806 VPCFALSK--NDAYLFSASGGVISLYIVMTFKTILTIM-PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVIS 881 (1093)
Q Consensus 806 v~~l~~s~--dg~~la~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~-~~~~ 881 (1093)
.++-+||| ||..+++.++++++.||+.+-+....+. +|...+..+.|.|+...+||+++.||.|+|||.+.. ..+.
T Consensus 173 ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~ 252 (370)
T KOG1007|consen 173 FTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQ 252 (370)
T ss_pred ecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccc
Confidence 34445666 8899999999999999999887766664 577889999999966778999999999999999864 5788
Q ss_pred ecccccCCeEEEEEeCC-CCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE-EeCCe
Q 001352 882 KLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETH 959 (1093)
Q Consensus 882 ~l~~h~~~V~~l~~s~d-g~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~ 959 (1093)
.+.+|+..|+++.|.|. .++++++|.|..|.+|....-.-.. .+.|-.|..-.-. ....+
T Consensus 253 el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~------------------qi~~~~dese~e~~dseer 314 (370)
T KOG1007|consen 253 ELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQ------------------QIEFEDDESESEDEDSEER 314 (370)
T ss_pred ccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccccc------------------ccccccccccCcchhhHHh
Confidence 99999999999999985 4678899999999999876522111 1111111100000 00011
Q ss_pred EEEEEcCCcceeeeeecCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEEcC
Q 001352 960 LAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSFVDGTLSIHEAS 1009 (1093)
Q Consensus 960 i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~-~l~t~~~dg~v~vwd~~ 1009 (1093)
++ -+.+|. +. .+..|...|.+++||.-.- .+|+-+.||++.|=.++
T Consensus 315 ~k--pL~dg~-l~-tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 315 VK--PLQDGQ-LE-TYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cc--cccccc-cc-cccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 11 111221 11 2556889999999987554 46788899998886654
No 196
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.72 E-value=1.7e-16 Score=150.25 Aligned_cols=290 Identities=15% Similarity=0.117 Sum_probs=199.2
Q ss_pred eecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEec-cccccEEEEEeeCCCCcEEEEEEcCCCcEEE
Q 001352 392 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKV 470 (1093)
Q Consensus 392 ~~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~v 470 (1093)
++.+|.+.|+++.|-.+++ |.+|...|.|++|++.+...+. .++ .|...|+.+.-.|++. +.+-+.|+.+.+
T Consensus 9 vLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~---~~r~~g~~~it~lq~~p~d~---l~tqgRd~~L~l 81 (323)
T KOG0322|consen 9 VLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLP---LIRLFGRLFITNLQSIPNDS---LDTQGRDPLLIL 81 (323)
T ss_pred Eeccccchheehhhccchh-hhcccccceEEEEEeecCccch---hhhhhccceeeceeecCCcc---hhhcCCCceEEE
Confidence 3778999999999988776 8899999999999999976544 455 4777899999999865 899999999999
Q ss_pred EECCCCceeEEeecCCCCeEEeeecccC---C----ccEEEEEecCCe-EEEEEcCCCCceEEecC----CCCceEEEEE
Q 001352 471 WDAVTGSRTYSFEGHGAPVYSLCPHAKE---N----IHFIFSISVDGK-IKAWLYDSLGARVDYDA----PGLGCTRMAY 538 (1093)
Q Consensus 471 wd~~~~~~~~~~~~h~~~v~~~~~~~~~---~----~~~l~s~~~dg~-i~vwd~~~~~~~~~~~~----~~~~v~~~~~ 538 (1093)
|++.-+..+. .|.-.++++-|.+.. + .+.++.-+.... +++-|............ ..+.+++..+
T Consensus 82 w~ia~s~~i~---i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~ 158 (323)
T KOG0322|consen 82 WTIAYSAFIS---IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDK 158 (323)
T ss_pred EEccCcceEE---EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeec
Confidence 9988765443 233344444443211 0 011111111000 22222222222222211 2234555553
Q ss_pred cc-CCC-EEEEEecCCCCceeEEEEeCCCCeeeeeeec-------ccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001352 539 SA-NGR-RLFSCGTSKEGESFLVEWNESEGAIKRTYQG-------LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 609 (1093)
Q Consensus 539 s~-d~~-~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~-------~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~ 609 (1093)
.. ++. .++.++. +.+.+.+||+.++..+-.+.. ...|..+|.++.+.+.-..=++|+.+..+..|+++
T Consensus 159 ~~~c~s~~lllaGy---Esghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~ 235 (323)
T KOG0322|consen 159 DHACGSTFLLLAGY---ESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLN 235 (323)
T ss_pred cccccceEEEEEec---cCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeec
Confidence 22 333 3344432 367799999999844322221 11234889999999877777888888899999876
Q ss_pred C--CceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCC
Q 001352 610 K--VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG 687 (1093)
Q Consensus 610 ~--~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 687 (1093)
. +.+.......-..+.+..+..-||++.+|+++.|+.|++|..++.+++..++.|...+++++|+
T Consensus 236 ~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfs------------- 302 (323)
T KOG0322|consen 236 HSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFS------------- 302 (323)
T ss_pred cccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeC-------------
Confidence 4 3332221111223568999999999999999999999999999999999999999999999997
Q ss_pred ceEecCCCCCCCccceeecccccceecce
Q 001352 688 SVSVNEDPKEDVKPEISVEAENKSEVEKP 716 (1093)
Q Consensus 688 ~~~~~~~~s~d~~~l~s~~~d~~i~~w~~ 716 (1093)
|+...++.++.|+.|.+|++
T Consensus 303 ---------pd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 303 ---------PDCELMAAASKDARISLWKL 322 (323)
T ss_pred ---------CCCchhhhccCCceEEeeec
Confidence 66778999999999999985
No 197
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.71 E-value=6.8e-15 Score=146.77 Aligned_cols=242 Identities=11% Similarity=0.167 Sum_probs=182.5
Q ss_pred CCCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCC--eEEEEEcCCcce
Q 001352 802 SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEV 879 (1093)
Q Consensus 802 ~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg--~i~iwd~~~~~~ 879 (1093)
....+..+.|..|...|..|+....++|..+..............|..+-|+. .++|..+.+. .+++++++.+..
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCce
Confidence 34456677799999999999877778888775544323333344677777875 3666655543 699999998877
Q ss_pred eeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE-E--e
Q 001352 880 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V--H 956 (1093)
Q Consensus 880 ~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~--~ 956 (1093)
+..+. ...+|.++.+. .++|+++=.+. |.|||+++-+ .+...........++.++++++.+.+||. + .
T Consensus 81 ICe~~-fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~Mk-----lLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t 151 (391)
T KOG2110|consen 81 ICEIF-FPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMK-----LLHTIETTPPNPKGLCALSPNNANCYLAYPGSTT 151 (391)
T ss_pred EEEEe-cCCceEEEEEc--cceEEEEEccc-EEEEecccce-----eehhhhccCCCccceEeeccCCCCceEEecCCCC
Confidence 77665 55679999986 45666665555 9999999843 44444433222235677777777889998 3 5
Q ss_pred CCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCc-EEEEEcCCCceEEEeccccccCCCCCCCcccee
Q 001352 957 ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPH 1035 (1093)
Q Consensus 957 d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1035 (1093)
.|.|.|||+.+.+.+..+ ..|.+.+.+++|++||.+|||+|..|+ |||+.+.+|+.+.+|+.... + +...
T Consensus 152 ~GdV~l~d~~nl~~v~~I-~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~-~-------~~Iy 222 (391)
T KOG2110|consen 152 SGDVVLFDTINLQPVNTI-NAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY-P-------VSIY 222 (391)
T ss_pred CceEEEEEcccceeeeEE-EecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce-e-------eEEE
Confidence 689999999999888874 489999999999999999999999997 79999999999999984443 2 3345
Q ss_pred EEEeCCCCCCEEEEEeCCCcEEEEecCCCC
Q 001352 1036 AIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1065 (1093)
Q Consensus 1036 ~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~ 1065 (1093)
+++|+| |+++|++.+..++|++|.+....
T Consensus 223 SL~Fs~-ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 223 SLSFSP-DSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEECC-CCCeEEEecCCCeEEEEEecccc
Confidence 789999 68999999999999999996543
No 198
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=6.2e-16 Score=152.25 Aligned_cols=275 Identities=15% Similarity=0.174 Sum_probs=192.1
Q ss_pred EEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC--CCCEEEEEEcCCEEEEEEcc
Q 001352 350 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGSLLGVAYSKHIVQLYAYH 427 (1093)
Q Consensus 350 llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~--dg~~las~~~d~~i~iwd~~ 427 (1093)
.+|++-..|+|++||..+|+.+.. +.+|...+..++|.. ....+.+|+.||+|++||+.
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~-------------------fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~R 102 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEE-------------------FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIR 102 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhhe-------------------ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEee
Confidence 588888899999999999988876 667888888899887 46789999999999999999
Q ss_pred CCCcccceEEecccc-ccEEEEEeeCCCCcEEEEEEc----CCCcEEEEECCCCce-eEEe-ecCCCCeEEeeecccCCc
Q 001352 428 GGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCG----DDKTIKVWDAVTGSR-TYSF-EGHGAPVYSLCPHAKENI 500 (1093)
Q Consensus 428 ~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~l~l~s~~----~d~~i~vwd~~~~~~-~~~~-~~h~~~v~~~~~~~~~~~ 500 (1093)
+......+ ...+|. .+..+++..-.++ .+++|. .|-.|.+||++..+. +..+ ..|...|++++|+|+. .
T Consensus 103 s~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~-p 178 (376)
T KOG1188|consen 103 SQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSD-P 178 (376)
T ss_pred cchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCC-C
Confidence 87654433 455666 4666777665565 566664 366799999998776 5544 6799999999999874 4
Q ss_pred cEEEEEecCCeEEEEEcCCCCce---EEecCCCCceEEEEEccCC-CEEEEEecCCCCceeEEEEeCCCCeeeeeeeccc
Q 001352 501 HFIFSISVDGKIKAWLYDSLGAR---VDYDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 576 (1093)
Q Consensus 501 ~~l~s~~~dg~i~vwd~~~~~~~---~~~~~~~~~v~~~~~s~d~-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 576 (1093)
.+|++||.||-|.+||+...... ...-.+...|..+.|..++ +.+.+.+. .....+|+++.+.....+....
T Consensus 179 nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH----~Etf~~~ele~~~~~~~~~~~~ 254 (376)
T KOG1188|consen 179 NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTH----METFAIYELEDGSEETWLENPD 254 (376)
T ss_pred CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEc----cCceeEEEccCCChhhcccCcc
Confidence 79999999999999999765332 2233355678999999888 23444443 4458999999887655444331
Q ss_pred cc---------CCCeEEEEEcC-CCCEEEE-EeCCCcEEEEECC---CCce---EEEEecCCCCCCCceEEEecCCCEEE
Q 001352 577 LQ---------HNSVSVVHFDT-AKDQILA-AGDDHVIKIWDMN---KVQL---LTTIDAGGGLPENPRICFNKNGTLLA 639 (1093)
Q Consensus 577 ~~---------~~~v~~v~~~~-~~~~l~~-~~~dg~i~iwd~~---~~~~---~~~~~~~~~~~~v~~v~~s~~~~~l~ 639 (1093)
.. ...+... .+| +....+. |+.-|...++-+. ++.. +..+.+ ++..-|+++.|...+..+.
T Consensus 255 ~~~~d~r~~~~~dY~I~~-~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g-~~~eiVR~i~~~~~~~~l~ 332 (376)
T KOG1188|consen 255 VSADDLRKEDNCDYVINE-HSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQG-GHEEIVRDILFDVKNDVLY 332 (376)
T ss_pred chhhhHHhhhhhhheeec-ccCCCcceEEEeccccCceeEEEeeecccccccCccccccC-CcHHHHHHHhhhcccceee
Confidence 00 0011111 123 2334444 3335566555443 3332 233332 2344578889998999999
Q ss_pred EEECCCeEEEEEcC
Q 001352 640 VIANENRIKILETP 653 (1093)
Q Consensus 640 ~~~~dg~i~iw~~~ 653 (1093)
+|+.||.+.+|...
T Consensus 333 TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 333 TGGEDGLLQAWKVE 346 (376)
T ss_pred ccCCCceEEEEecC
Confidence 99999999999964
No 199
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.71 E-value=2.5e-14 Score=157.75 Aligned_cols=275 Identities=14% Similarity=0.194 Sum_probs=178.5
Q ss_pred eEEEEEccCCcEEEEecCC-CceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEE-cCCEEEEEEc
Q 001352 349 TLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAY 426 (1093)
Q Consensus 349 ~llasg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~-~d~~i~iwd~ 426 (1093)
+++++...++.|.+||+.+ |+...... + .+.+....++++||+++|++++ .++.|.+|++
T Consensus 3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~-----------------~-~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~ 64 (330)
T PRK11028 3 IVYIASPESQQIHVWNLNHEGALTLLQV-----------------V-DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRI 64 (330)
T ss_pred EEEEEcCCCCCEEEEEECCCCceeeeeE-----------------E-ecCCCCccEEECCCCCEEEEEECCCCcEEEEEE
Confidence 3455557789999999974 43222111 1 1345677899999999987764 5778999999
Q ss_pred cCCCcccceEEeccccccEEEEEeeCCCCcEEEEEE-cCCCcEEEEECCC-Cc---eeEEeecCCCCeEEeeecccCCcc
Q 001352 427 HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC-GDDKTIKVWDAVT-GS---RTYSFEGHGAPVYSLCPHAKENIH 501 (1093)
Q Consensus 427 ~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~-~~d~~i~vwd~~~-~~---~~~~~~~h~~~v~~~~~~~~~~~~ 501 (1093)
.....+...... ...+....++|+|+++. ++++ ..++.|.+|++.+ +. .+..+.+ ......++++ ++++
T Consensus 65 ~~~g~l~~~~~~-~~~~~p~~i~~~~~g~~--l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~--p~g~ 138 (330)
T PRK11028 65 ADDGALTFAAES-PLPGSPTHISTDHQGRF--LFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANID--PDNR 138 (330)
T ss_pred CCCCceEEeeee-cCCCCceEEEECCCCCE--EEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeC--CCCC
Confidence 732222222122 23345678999999994 4444 4588999999864 32 2333332 2335566674 4666
Q ss_pred EEE-EEecCCeEEEEEcCCCCceEE-----e-cCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC--Ce--eee
Q 001352 502 FIF-SISVDGKIKAWLYDSLGARVD-----Y-DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE--GA--IKR 570 (1093)
Q Consensus 502 ~l~-s~~~dg~i~vwd~~~~~~~~~-----~-~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~--~~--~~~ 570 (1093)
+++ +...++.|.+||+++...... . ...+.....++|+|+|++++++.. .++.|.+|++.. ++ .+.
T Consensus 139 ~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~---~~~~v~v~~~~~~~~~~~~~~ 215 (330)
T PRK11028 139 TLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE---LNSSVDVWQLKDPHGEIECVQ 215 (330)
T ss_pred EEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec---CCCEEEEEEEeCCCCCEEEEE
Confidence 665 555679999999986432211 1 112345678999999999988764 356799999873 32 233
Q ss_pred eeecccc---cCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCc----eEEEEecCCCCCCCceEEEecCCCEEEEEE
Q 001352 571 TYQGLQL---QHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQ----LLTTIDAGGGLPENPRICFNKNGTLLAVIA 642 (1093)
Q Consensus 571 ~~~~~~~---~~~~v~~v~~~~~~~~l~~~~-~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 642 (1093)
.+..... .......+.++|++++++++. .++.|.+|++.... .+...... .....++++|+|++|+++.
T Consensus 216 ~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~---~~p~~~~~~~dg~~l~va~ 292 (330)
T PRK11028 216 TLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE---TQPRGFNIDHSGKYLIAAG 292 (330)
T ss_pred EEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc---ccCCceEECCCCCEEEEEE
Confidence 3322110 111234688999999999975 47899999986533 22222221 2356799999999999887
Q ss_pred C-CCeEEEEEcC
Q 001352 643 N-ENRIKILETP 653 (1093)
Q Consensus 643 ~-dg~i~iw~~~ 653 (1093)
. +++|.+|++.
T Consensus 293 ~~~~~v~v~~~~ 304 (330)
T PRK11028 293 QKSHHISVYEID 304 (330)
T ss_pred ccCCcEEEEEEc
Confidence 6 8999999875
No 200
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=3.9e-16 Score=158.72 Aligned_cols=199 Identities=17% Similarity=0.196 Sum_probs=164.3
Q ss_pred eEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeeccc
Q 001352 807 PCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG 885 (1093)
Q Consensus 807 ~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~ 885 (1093)
.+++|+++|..++++. ||++|||++.+...+.....|..+|.++.||| |+++|++-+.| ..+||+..+|..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899999999999997 89999999988888888888999999999999 99999999999 899999999977766553
Q ss_pred --ccCCeEEEEEeCCC-----CEEEEEeCCCcEEEEeCCCCceeee-eeeecCCCcccCCCCceEEEEccCCCEEEE-Ee
Q 001352 886 --HSKRVTGLVFSDAL-----NILVSSGGDAQIFVWDVDGWGIQTC-RSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VH 956 (1093)
Q Consensus 886 --h~~~V~~l~~s~dg-----~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~ 956 (1093)
-......+.|+.|+ ..++....-+.|+.|++..+..... +..+....+. .|++++.|+||+++|. +.
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~----siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFK----SISSLAVSDDGKFLALGTM 301 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccC----cceeEEEcCCCcEEEEecc
Confidence 23346678899887 4445555567788888876543211 1122222222 5999999999999999 58
Q ss_pred CCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 001352 957 ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1011 (1093)
Q Consensus 957 d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~ 1011 (1093)
||.|.|+++.+.+++......|..-|+.+.|+||.+++++.+.|....|..+.-.
T Consensus 302 dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeec
Confidence 9999999999999998888899999999999999999999999999999888763
No 201
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=1.7e-14 Score=161.66 Aligned_cols=302 Identities=17% Similarity=0.202 Sum_probs=206.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCC-CCCCCceEEEec--CCCEEEEEECCCeEEEEEcCCCce
Q 001352 581 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG-GLPENPRICFNK--NGTLLAVIANENRIKILETPESNS 657 (1093)
Q Consensus 581 ~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~s~--~~~~l~~~~~dg~i~iw~~~~~~~ 657 (1093)
....+.|+|-...++++.+.-.|+|||.+.++.+..+..+. ....|..+.+-. |..++.+++.||.|+||+-.....
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 45678899999999999988899999999999988876542 223466666654 556788888888888887442200
Q ss_pred eeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccc
Q 001352 658 VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANK 737 (1093)
Q Consensus 658 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 737 (1093)
+...++++
T Consensus 1146 ----------------------------------------~~~eLVTa-------------------------------- 1153 (1387)
T KOG1517|consen 1146 ----------------------------------------KKPELVTA-------------------------------- 1153 (1387)
T ss_pred ----------------------------------------CCceeEEe--------------------------------
Confidence 00011111
Q ss_pred eEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccC-CC
Q 001352 738 ISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN-DA 816 (1093)
Q Consensus 738 i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d-g~ 816 (1093)
|++-...+.+....| .-+.|-.. |.
T Consensus 1154 -----w~~Ls~~~~~~r~~~-------------------------------------------------~v~dWqQ~~G~ 1179 (1387)
T KOG1517|consen 1154 -----WSSLSDQLPGARGTG-------------------------------------------------LVVDWQQQSGH 1179 (1387)
T ss_pred -----eccccccCccCCCCC-------------------------------------------------eeeehhhhCCe
Confidence 000000000000011 11233333 34
Q ss_pred EEEEEeCCeEEEEEccCceeEEEECC-CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc---ceeeecccccCC--e
Q 001352 817 YLFSASGGVISLYIVMTFKTILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS---EVISKLEGHSKR--V 890 (1093)
Q Consensus 817 ~la~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~---~~~~~l~~h~~~--V 890 (1093)
++++|.-..|+|||.......+.+.. ....++++.-+...|..+++|..||.|++||.+.. ..+...+.|+.. |
T Consensus 1180 Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~I 1259 (1387)
T KOG1517|consen 1180 LLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPI 1259 (1387)
T ss_pred EEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccc
Confidence 44444447899999988777776653 44577888776657899999999999999998754 356777889887 9
Q ss_pred EEEEEeCCCC-EEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcc
Q 001352 891 TGLVFSDALN-ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELT 969 (1093)
Q Consensus 891 ~~l~~s~dg~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~ 969 (1093)
..+.+-+.|- .|++|+.||.|++||+..........+. .+...+...+++..+++...+|+|+.+.|+||++.. +
T Consensus 1260 v~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv---~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G-~ 1335 (1387)
T KOG1517|consen 1260 VHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIV---AHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSG-E 1335 (1387)
T ss_pred eeEEeecCCCcceeeeccCCeEEEEecccCcccccceee---eccccCccceeeeeccCCCeeeecCcceEEEEecCh-h
Confidence 9999988764 4999999999999999874322211111 111112348999999999999998779999999864 3
Q ss_pred eeeeee------cCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 001352 970 CLKQWF------PISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1012 (1093)
Q Consensus 970 ~~~~~~------~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~ 1012 (1093)
.+..+. ....+.+.+++|.|.--+||+|+.|.+|.||......
T Consensus 1336 ~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1336 QLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred hhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 332211 1125678999999999999999999999999887654
No 202
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.66 E-value=4.2e-14 Score=161.37 Aligned_cols=255 Identities=13% Similarity=0.098 Sum_probs=182.2
Q ss_pred ecCCCCCeEEEEECCCC-CEEEEEEcCCEEEEEEccCC----CcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCc
Q 001352 393 VRDPGVSVNRVVWSPDG-SLLGVAYSKHIVQLYAYHGG----SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT 467 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~dg-~~las~~~d~~i~iwd~~~~----~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~ 467 (1093)
+..|...|..++.+++. .++++||.||+|++|+...- ...+...++.....++.++.+.+.+. .+|.++.||.
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDGS 1121 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCCe
Confidence 66799999999988755 99999999999999998632 22333334444567899999999999 6888899999
Q ss_pred EEEEECCC--Cce-----eEEeec-CCCCeEEee-ecccCCccEEEEEecCCeEEEEEcCCCCceEE--ecCCCCceEEE
Q 001352 468 IKVWDAVT--GSR-----TYSFEG-HGAPVYSLC-PHAKENIHFIFSISVDGKIKAWLYDSLGARVD--YDAPGLGCTRM 536 (1093)
Q Consensus 468 i~vwd~~~--~~~-----~~~~~~-h~~~v~~~~-~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~~v~~~ 536 (1093)
|++.+++. .+. .+.... ..+.+.++. +........++.+..-+.|..||.+....... .....+-|+++
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence 99999876 221 111122 223444443 32222223788899999999999988776554 34456689999
Q ss_pred EEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCC---CCEEEEE-e-CCCcEEEEECCCC
Q 001352 537 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA---KDQILAA-G-DDHVIKIWDMNKV 611 (1093)
Q Consensus 537 ~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~---~~~l~~~-~-~dg~i~iwd~~~~ 611 (1093)
+.+|-+.+++.|+. .|.+.+||++=+.++....... ..++..+..+|- ....+++ + ..+.|.+|++.+|
T Consensus 1202 ~idp~~~WlviGts----~G~l~lWDLRF~~~i~sw~~P~--~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTS----RGQLVLWDLRFRVPILSWEHPA--RAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred EecCCceEEEEecC----CceEEEEEeecCceeecccCcc--cCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence 99999999999986 6779999999988888776544 356777766654 3455554 4 5788999999999
Q ss_pred ceEEEEecCCCC-----------------CCCceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001352 612 QLLTTIDAGGGL-----------------PENPRICFNKNGTLLAVIANENRIKILETPES 655 (1093)
Q Consensus 612 ~~~~~~~~~~~~-----------------~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 655 (1093)
.+...+...... ......++...+..+.+|+.|..|+.||....
T Consensus 1276 ~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1276 LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 877766443110 01122333344668899999999999998865
No 203
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=1.1e-14 Score=165.37 Aligned_cols=235 Identities=13% Similarity=0.118 Sum_probs=162.4
Q ss_pred CCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcC---CEEEEEEccCCCccc
Q 001352 357 VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDAR 433 (1093)
Q Consensus 357 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d---~~i~iwd~~~~~~~~ 433 (1093)
+..|.+||....... . +..|...+.+.+|||||++||+++.+ ..|++||+.+++...
T Consensus 183 ~~~i~i~d~dg~~~~-~-------------------lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~ 242 (429)
T PRK01742 183 PYEVRVADYDGFNQF-I-------------------VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV 242 (429)
T ss_pred eEEEEEECCCCCCce-E-------------------eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence 468999998765432 1 55688899999999999999988654 479999998875321
Q ss_pred ceEEeccccccEEEEEeeCCCCcEEEEE-EcCCCcEEEE--ECCCCceeEEeecCCCCeEEeeecccCCccEEEEEe-cC
Q 001352 434 QQLEIDAHVGNVNDLAFSAPCKQISVIT-CGDDKTIKVW--DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VD 509 (1093)
Q Consensus 434 ~~~~~~~h~~~v~~~~~s~d~~~l~l~s-~~~d~~i~vw--d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~d 509 (1093)
+..+.+| ...++|+|||+ .|+. .+.+|.+.|| |+.+++ +..+..+...+....|++ ||..|+..+ .+
T Consensus 243 -l~~~~g~---~~~~~wSPDG~--~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSp--DG~~i~f~s~~~ 313 (429)
T PRK01742 243 -VASFRGH---NGAPAFSPDGS--RLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSP--DGQSILFTSDRS 313 (429)
T ss_pred -EecCCCc---cCceeECCCCC--EEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECC--CCCEEEEEECCC
Confidence 2233344 34689999999 4554 4567766555 666665 455666777777788854 666666554 67
Q ss_pred CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcC
Q 001352 510 GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 589 (1093)
Q Consensus 510 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~ 589 (1093)
|...+|+++..........+.. ....|+|||++++..+. ..+.+||+.+++........ ....+.|+|
T Consensus 314 g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g~~~~lt~~~-----~~~~~~~sP 381 (429)
T PRK01742 314 GSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMING-----DNVVKQDLTSGSTEVLSSTF-----LDESPSISP 381 (429)
T ss_pred CCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcC-----CCEEEEECCCCCeEEecCCC-----CCCCceECC
Confidence 8889998765433222222222 45789999999988764 23777999988765333222 234578999
Q ss_pred CCCEEEEEeCCCcEEEEEC--CCCceEEEEecCCCCCCCceEEEecC
Q 001352 590 AKDQILAAGDDHVIKIWDM--NKVQLLTTIDAGGGLPENPRICFNKN 634 (1093)
Q Consensus 590 ~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~v~~s~~ 634 (1093)
+|++++.++.++...+|++ .+|+....+..+. ..+...+|+|-
T Consensus 382 dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~--g~~~~p~wsp~ 426 (429)
T PRK01742 382 NGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSD--GQVKFPAWSPY 426 (429)
T ss_pred CCCEEEEEEcCCCceEEEEEECCCCceEEccCCC--CCCCCcccCCC
Confidence 9999999999998888875 3577777776443 34778889874
No 204
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=2.9e-13 Score=145.29 Aligned_cols=509 Identities=12% Similarity=0.140 Sum_probs=306.5
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCc------------ccceEEeccccccEEEEEeeCCCCcEEEEEEc
Q 001352 396 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD------------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCG 463 (1093)
Q Consensus 396 h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~------------~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~ 463 (1093)
......|++|+....|+|+|+.||.++|-.+.+... +....++.||.+.|.-+.|+.+.+ .|-|..
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q--KLTtSD 90 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ--KLTTSD 90 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc--cccccC
Confidence 456789999999999999999999999998875432 112235789999999999999888 689999
Q ss_pred CCCcEEEEECCCCceeEEe--ecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccC
Q 001352 464 DDKTIKVWDAVTGSRTYSF--EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN 541 (1093)
Q Consensus 464 ~d~~i~vwd~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d 541 (1093)
.+|.|.||-+-.|.....+ ....+.|.+++| ..||..+.....||.|.+=.++.. .+.--...+.....+.|++|
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsW--n~dG~kIcIvYeDGavIVGsvdGN-RIwgKeLkg~~l~hv~ws~D 167 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSW--NLDGTKICIVYEDGAVIVGSVDGN-RIWGKELKGQLLAHVLWSED 167 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEE--cCCCcEEEEEEccCCEEEEeeccc-eecchhcchheccceeeccc
Confidence 9999999998888655433 234566888888 557788888888988877655432 22222222334457889999
Q ss_pred CCEEEEEecCCCCceeEEEEeCCCCe-------eeeeeec-ccccCCCeEEEEEc--------CCCCEEEEEeCCCcEEE
Q 001352 542 GRRLFSCGTSKEGESFLVEWNESEGA-------IKRTYQG-LQLQHNSVSVVHFD--------TAKDQILAAGDDHVIKI 605 (1093)
Q Consensus 542 ~~~l~~~~~~~~~~~~i~iwd~~~~~-------~~~~~~~-~~~~~~~v~~v~~~--------~~~~~l~~~~~dg~i~i 605 (1093)
.+.++.+-. .+.+.++|.+..- +.....+ .......+..+.|. |+...++++-.+|.+.|
T Consensus 168 ~~~~Lf~~a----nge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Qi 243 (1189)
T KOG2041|consen 168 LEQALFKKA----NGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQI 243 (1189)
T ss_pred HHHHHhhhc----CCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehh
Confidence 998877654 4458888865321 1001111 01011224444443 57789999999999988
Q ss_pred EECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCC---------eEEEEEcCCCceeeecccccccceeeeecCC
Q 001352 606 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN---------RIKILETPESNSVDAAGVLSDNLRKLSVNPI 676 (1093)
Q Consensus 606 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg---------~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~ 676 (1093)
-.-.+......+... ..+....|+++|..|++++.+. .|.+|.. -+..+.+++.+.
T Consensus 244 MR~eND~~Pvv~dtg---m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg----------- 308 (1189)
T KOG2041|consen 244 MRSENDPEPVVVDTG---MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPG----------- 308 (1189)
T ss_pred hhhcCCCCCeEEecc---cEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCC-----------
Confidence 765554433333322 2467889999999999998753 1222211 112222222222
Q ss_pred CceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeecc
Q 001352 677 STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN 756 (1093)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d 756 (1093)
..|+++.|-..|-.++. +-|
T Consensus 309 -----------------------------------------------------------~~It~lsWEg~gLriA~-Avd 328 (1189)
T KOG2041|consen 309 -----------------------------------------------------------SCITGLSWEGTGLRIAI-AVD 328 (1189)
T ss_pred -----------------------------------------------------------ceeeeeEEcCCceEEEE-Eec
Confidence 34445555444433322 223
Q ss_pred ceeEEeeecCccc----------CcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCe
Q 001352 757 GVHLMWRWPRNDL----------TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGV 825 (1093)
Q Consensus 757 g~v~vw~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~ 825 (1093)
+.+.+=++..+-. ...+.......+..||..+.+.... .-....++++..+.-.|+.-. ++.
T Consensus 329 sfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK-------~V~~~~~~a~~~ehCvL~~~~d~~~ 401 (1189)
T KOG2041|consen 329 SFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVK-------TVTHFENMAFYREHCVLINRQDDGV 401 (1189)
T ss_pred ceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhh-------hhcceeehheecccEEEEeccccCC
Confidence 3333322221110 0111112223456677776663332 223456777777666665554 465
Q ss_pred EEEEE-ccCceeEEEEC----------CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcce---------------
Q 001352 826 ISLYI-VMTFKTILTIM----------PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--------------- 879 (1093)
Q Consensus 826 i~iwd-~~~~~~~~~~~----------~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~--------------- 879 (1093)
+.-++ +++...+..+. ..-..|.-.-..- ++..++.++.+ .+.+|.....+.
T Consensus 402 i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~v-n~~~vviAS~e-~~~iWhy~~pK~~s~l~~~k~rkegr~ 479 (1189)
T KOG2041|consen 402 IPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCV-NGICVVIASEE-RYFIWHYVLPKFNSVLAGVKIRKEGRF 479 (1189)
T ss_pred CcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEe-cceEEEEeccc-cEEEEEEeccchhhhhhhhhhcccccc
Confidence 55442 22222111111 0011222222222 56677777766 477887643211
Q ss_pred -----------------eeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceE
Q 001352 880 -----------------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH 942 (1093)
Q Consensus 880 -----------------~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 942 (1093)
..++.|..++|.+++.| .++|..+-..|.|.-+.+.+.... +...-. ..+.+
T Consensus 480 h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~-----n~y~~n----~~~y~ 548 (1189)
T KOG2041|consen 480 HGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLT-----NSYPVN----PSIYS 548 (1189)
T ss_pred cCCCCccchhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeee-----eccccC----chhee
Confidence 13445666788888886 578899999999999999884322 222111 35889
Q ss_pred EEEccCCCEEEE-EeCCeEEEEEcC---CcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 001352 943 IQFHKDQTRFLL-VHETHLAIYEAE---ELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1008 (1093)
Q Consensus 943 ~~~s~dg~~l~~-~~d~~i~vwd~~---~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~ 1008 (1093)
++.+.+...+|+ ---|.+.+.|+. +|..+.-+.......|+.+.|..|...|++--....+.|++-
T Consensus 549 ~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~errDVWd~~Wa~dNp~llAlmeKtrmyifrg 618 (1189)
T KOG2041|consen 549 IKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSERRDVWDYEWAQDNPNLLALMEKTRMYIFRG 618 (1189)
T ss_pred EeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhhhhhhhhhhhccCCchHHhhhhhceEEEecC
Confidence 999999998887 456777777665 455555455555778899999888776665555555666643
No 205
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=3.9e-14 Score=158.83 Aligned_cols=298 Identities=14% Similarity=0.191 Sum_probs=208.4
Q ss_pred ccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC--CC
Q 001352 332 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DG 409 (1093)
Q Consensus 332 ~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~--dg 409 (1093)
.+.......+.|+|-... ++++...-.|+|||.+.++.+..+.- -......|+.+.+-. |.
T Consensus 1061 ~~n~~~pk~~~~hpf~p~-i~~ad~r~~i~vwd~e~~~~l~~F~n----------------~~~~~t~Vs~l~liNe~D~ 1123 (1387)
T KOG1517|consen 1061 TGNNQPPKTLKFHPFEPQ-IAAADDRERIRVWDWEKGRLLNGFDN----------------GAFPDTRVSDLELINEQDD 1123 (1387)
T ss_pred hcCCCCCceeeecCCCce-eEEcCCcceEEEEecccCceeccccC----------------CCCCCCccceeeeecccch
Confidence 344445677889998874 67766667899999999988754221 012345788888865 56
Q ss_pred CEEEEEEcCCEEEEEEccCC--Cc---ccceEEecccc----ccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeE
Q 001352 410 SLLGVAYSKHIVQLYAYHGG--SD---ARQQLEIDAHV----GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 480 (1093)
Q Consensus 410 ~~las~~~d~~i~iwd~~~~--~~---~~~~~~~~~h~----~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~ 480 (1093)
.+|.+|+.||.|+||+-.-. +. +.....+.++. +.=.-++|-.... .|+++|.-..|+|||.....+.+
T Consensus 1124 aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G--~Ll~tGd~r~IRIWDa~~E~~~~ 1201 (1387)
T KOG1517|consen 1124 ALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG--HLLVTGDVRSIRIWDAHKEQVVA 1201 (1387)
T ss_pred hheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC--eEEecCCeeEEEEEecccceeEe
Confidence 78999999999999974322 11 11111122221 1113457777666 56666668899999999988888
Q ss_pred Eeec-CCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCc---eEEecCCCCc--eEEEEEccCCCE-EEEEecCCC
Q 001352 481 SFEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLG--CTRMAYSANGRR-LFSCGTSKE 553 (1093)
Q Consensus 481 ~~~~-h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~--v~~~~~s~d~~~-l~~~~~~~~ 553 (1093)
.+.. ....|+++.-.-. .|..+++|..||.|++||.+.... +.....|... |..+.+-+.|-. |++++.
T Consensus 1202 diP~~s~t~vTaLS~~~~-~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~--- 1277 (1387)
T KOG1517|consen 1202 DIPYGSSTLVTALSADLV-HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQ--- 1277 (1387)
T ss_pred ecccCCCccceeeccccc-CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeecc---
Confidence 7753 4456777765433 378999999999999999986544 4455666665 999999887765 888876
Q ss_pred CceeEEEEeCCCCeeeeeee--cccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecC-----CCCCCC
Q 001352 554 GESFLVEWNESEGAIKRTYQ--GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----GGLPEN 626 (1093)
Q Consensus 554 ~~~~i~iwd~~~~~~~~~~~--~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v 626 (1093)
+|.|++||++.......+. .|..-+..++++..++....+++|+. +.|.||++...+ +..+... .....+
T Consensus 1278 -~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~-l~~~k~n~~F~~q~~gs~ 1354 (1387)
T KOG1517|consen 1278 -DGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQ-LNIIKYNPGFMGQRIGSV 1354 (1387)
T ss_pred -CCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhh-hcccccCcccccCcCCCc
Confidence 5569999998752222221 11111235899999999999999988 999999986543 3333221 223457
Q ss_pred ceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001352 627 PRICFNKNGTLLAVIANENRIKILETPES 655 (1093)
Q Consensus 627 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 655 (1093)
.+++|+|.--++|+|+.|..|.||.....
T Consensus 1355 scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1355 SCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred ceeeecchhHhhhhccCCceEEEeecCCc
Confidence 89999999999999999999999987654
No 206
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.64 E-value=1.3e-12 Score=142.57 Aligned_cols=331 Identities=15% Similarity=0.173 Sum_probs=202.6
Q ss_pred cEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEE
Q 001352 456 QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR 535 (1093)
Q Consensus 456 ~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 535 (1093)
.+++++-..++.|.|.|..+.+.+.++......-..+.+ ++||+++++++.||.|.++|+.+.+....+.... ...+
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~--s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~ 82 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKF--SPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRG 82 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE---TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEe--cCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-Ccce
Confidence 346677888999999999999999999865443333455 5678899999999999999999999877776544 5678
Q ss_pred EEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccc----cCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCC
Q 001352 536 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL----QHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNK 610 (1093)
Q Consensus 536 ~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~----~~~~v~~v~~~~~~~~l~~~~-~dg~i~iwd~~~ 610 (1093)
+++|+||++++++... .+.+.++|.++.+.++.+..... ....+.++..+|....++..- +.+.|.+.|...
T Consensus 83 i~~s~DG~~~~v~n~~---~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYE---PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEE--TTTEEEEEEEE---TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred EEEcCCCCEEEEEecC---CCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 9999999999987642 55699999999999988765431 124577888888888665554 458888889877
Q ss_pred CceEE--EEecCCCCCCCceEEEecCCCEEEEE-ECCCeEEEEEcCCCceeeecccccc----cceeeeecCCCceeeee
Q 001352 611 VQLLT--TIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAAGVLSD----NLRKLSVNPISTVTGAG 683 (1093)
Q Consensus 611 ~~~~~--~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~~~~~ 683 (1093)
.+.+. .+... .......|+|++++++++ ..++.|.++|..+++....+..... +...+ .+|
T Consensus 160 ~~~~~~~~i~~g---~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php-------- 227 (369)
T PF02239_consen 160 PKNLKVTTIKVG---RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHP-------- 227 (369)
T ss_dssp SSCEEEEEEE-----TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EET--------
T ss_pred ccccceeeeccc---ccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCC--------
Confidence 65443 33322 125678999999987765 4567899999887755543321000 00000 000
Q ss_pred ccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEee
Q 001352 684 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWR 763 (1093)
Q Consensus 684 ~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~ 763 (1093)
..+.+... ...+...++.-..
T Consensus 228 --------------------------------------------------~~g~vw~~--~~~~~~~~~~ig~------- 248 (369)
T PF02239_consen 228 --------------------------------------------------GFGPVWAT--SGLGYFAIPLIGT------- 248 (369)
T ss_dssp --------------------------------------------------TTEEEEEE--EBSSSSEEEEEE--------
T ss_pred --------------------------------------------------CcceEEee--ccccceecccccC-------
Confidence 00011100 1111111111111
Q ss_pred ecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEE---e-C-CeEEEEEccCceeEE
Q 001352 764 WPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA---S-G-GVISLYIVMTFKTIL 838 (1093)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~---~-d-g~i~iwd~~~~~~~~ 838 (1093)
..+.+|+..+.+.+...... ... .-+..+||++++.+. + + ++|.++|.++.+.+.
T Consensus 249 ---------------~~v~v~d~~~wkvv~~I~~~----G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~ 308 (369)
T PF02239_consen 249 ---------------DPVSVHDDYAWKVVKTIPTQ----GGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVK 308 (369)
T ss_dssp ----------------TTT-STTTBTSEEEEEE-S----SSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE
T ss_pred ---------------CccccchhhcCeEEEEEECC----CCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeE
Confidence 13444565665556665542 233 667889999999998 3 3 789999999998888
Q ss_pred EECCCC-CCeEEEEEcCCCCCEEEEEeCC-C-eEEEEEcCCcceeeecc
Q 001352 839 TIMPPS-PTATSLAFNPHDNNVIAIGMDD-S-TILIYNARSSEVISKLE 884 (1093)
Q Consensus 839 ~~~~~~-~~i~~l~~s~~d~~~lasg~~d-g-~i~iwd~~~~~~~~~l~ 884 (1093)
++.... ..+..+.|++ +|+.+..+..+ + .|.+||..+.+.+.+++
T Consensus 309 ~i~~~~~~~~~h~ef~~-dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 309 TITPGPGKRVVHMEFNP-DGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp -HHHHHT--EEEEEE-T-TSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred EEeccCCCcEeccEECC-CCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 775322 3589999999 77766554443 3 79999999999988876
No 207
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.64 E-value=1.8e-13 Score=149.44 Aligned_cols=321 Identities=13% Similarity=0.142 Sum_probs=198.2
Q ss_pred EEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCC
Q 001352 502 FIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS 581 (1093)
Q Consensus 502 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~ 581 (1093)
++++-..+|.|.+.|..+.+....+......-..+.|+|||+++++++. ++.|.++|+.+++.++++... ..
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r----dg~vsviD~~~~~~v~~i~~G----~~ 79 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR----DGTVSVIDLATGKVVATIKVG----GN 79 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET----TSEEEEEETTSSSEEEEEE-S----SE
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC----CCeEEEEECCcccEEEEEecC----CC
Confidence 3456677899999999998888888776555556789999999999875 567999999999999888763 35
Q ss_pred eEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEecCCC-----CCCCceEEEecCCCEEEEEEC-CCeEEEEEcCC
Q 001352 582 VSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGG-----LPENPRICFNKNGTLLAVIAN-ENRIKILETPE 654 (1093)
Q Consensus 582 v~~v~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~v~~s~~~~~l~~~~~-dg~i~iw~~~~ 654 (1093)
...+++++||++++++. .++.+.++|.++.+.+..+..... .+.+..+..+|....+++.-. .+.|.+.|...
T Consensus 80 ~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 80 PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 78899999999998864 789999999999999988865422 234556777887775555544 47887777665
Q ss_pred CceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCcccc
Q 001352 655 SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVK 734 (1093)
Q Consensus 655 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~ 734 (1093)
...+..... ..
T Consensus 160 ~~~~~~~~i---------------------------------------------------------------------~~ 170 (369)
T PF02239_consen 160 PKNLKVTTI---------------------------------------------------------------------KV 170 (369)
T ss_dssp SSCEEEEEE---------------------------------------------------------------------E-
T ss_pred ccccceeee---------------------------------------------------------------------cc
Confidence 422211000 01
Q ss_pred ccceEEEEeecCCceEEEeec-cceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEE----
Q 001352 735 ANKISRLTYNNGGQAIFALAS-NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF---- 809 (1093)
Q Consensus 735 ~~~i~~l~~s~~g~~l~~~~~-dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l---- 809 (1093)
........|+|++++++++.. +..+-++|....+. +.....|. ..|..+...+
T Consensus 171 g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~-------------v~~i~~g~---------~p~~~~~~~~php~ 228 (369)
T PF02239_consen 171 GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL-------------VALIDTGK---------KPHPGPGANFPHPG 228 (369)
T ss_dssp -TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE-------------EEEEE-SS---------SBEETTEEEEEETT
T ss_pred cccccccccCcccceeeecccccceeEEEeeccceE-------------EEEeeccc---------cccccccccccCCC
Confidence 122345678888887766543 45666666544322 00111111 0122222221
Q ss_pred -----EEccCCCEEEE-EeCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEE----eCCCeEEEEEcCCcce
Q 001352 810 -----ALSKNDAYLFS-ASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIG----MDDSTILIYNARSSEV 879 (1093)
Q Consensus 810 -----~~s~dg~~la~-~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg----~~dg~i~iwd~~~~~~ 879 (1093)
+....+...++ .+.+.+.+||..+++.++++...... .-+..+| +++++.+. ...++|.++|..+.+.
T Consensus 229 ~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~ 306 (369)
T PF02239_consen 229 FGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKV 306 (369)
T ss_dssp TEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEE
T ss_pred cceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCC-CCccEEeeccCCCCCceEEEEECcCcce
Confidence 12223333322 23456678999999999999877666 7888899 89999887 4457999999999988
Q ss_pred eeeccccc-CCeEEEEEeCCCCEEEEEeCC--CcEEEEeCCCCceee
Q 001352 880 ISKLEGHS-KRVTGLVFSDALNILVSSGGD--AQIFVWDVDGWGIQT 923 (1093)
Q Consensus 880 ~~~l~~h~-~~V~~l~~s~dg~~l~s~s~d--g~i~iwd~~~~~~~~ 923 (1093)
+.++.... ..+..+.|++||+.+..+..+ +.|.|||..+.+...
T Consensus 307 ~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~ 353 (369)
T PF02239_consen 307 VKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKK 353 (369)
T ss_dssp EE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred eEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEE
Confidence 87775332 358899999999986655443 369999999976554
No 208
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.64 E-value=4.1e-14 Score=157.85 Aligned_cols=250 Identities=17% Similarity=0.164 Sum_probs=181.7
Q ss_pred CCCCeEEEEECC-CCCEEEEEEcCCEEEEEEccCCCcc--cce-EEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEE
Q 001352 396 PGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDA--RQQ-LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 471 (1093)
Q Consensus 396 h~~~V~~v~~s~-dg~~las~~~d~~i~iwd~~~~~~~--~~~-~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw 471 (1093)
-...|.|++|+| +..++|.|..+|.|.+||+..+... ... .....|..+++.+.|..+-...-+++++.||.|+.|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 467899999999 5678888899999999999987651 111 123368999999999765442258999999999999
Q ss_pred ECCCCcee------EEee------cCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCc--------eEEecCCCC
Q 001352 472 DAVTGSRT------YSFE------GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--------RVDYDAPGL 531 (1093)
Q Consensus 472 d~~~~~~~------~~~~------~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--------~~~~~~~~~ 531 (1093)
+++.-... .... .-...++++.|.+. +-..++.|+.+|.|.--....... ...+..|.+
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~-~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPT-DPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccC-CCceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence 87643221 1111 12345778888765 446799999999988733322211 225566788
Q ss_pred ceEEEEEccCCCEEEEEecCCCCceeEEEEeCC-CCeeeeeeecccccCCCeEEEEEcCCCCE-EEEEeCCCcEEEEECC
Q 001352 532 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQ-ILAAGDDHVIKIWDMN 609 (1093)
Q Consensus 532 ~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~v~~~~~~~~-l~~~~~dg~i~iwd~~ 609 (1093)
+|.++.++|-+..++..+. +..++||... ...++..+..+. ..+.+++|||.... ++++..||.+.+||+.
T Consensus 400 ~v~~v~~nPF~~k~fls~g----DW~vriWs~~~~~~Pl~~~~~~~---~~v~~vaWSptrpavF~~~d~~G~l~iWDLl 472 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSVG----DWTVRIWSEDVIASPLLSLDSSP---DYVTDVAWSPTRPAVFATVDGDGNLDIWDLL 472 (555)
T ss_pred ceEeeecCCCccceeeeec----cceeEeccccCCCCcchhhhhcc---ceeeeeEEcCcCceEEEEEcCCCceehhhhh
Confidence 9999999998876665543 6779999987 556666666655 66999999998755 4557789999999997
Q ss_pred CCce--EEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001352 610 KVQL--LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 655 (1093)
Q Consensus 610 ~~~~--~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 655 (1093)
.... +...... ....+.+.|+++|+.|++|...|.+.+|++...
T Consensus 473 ~~~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 473 QDDEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 5443 3333333 345678889999999999999999999999743
No 209
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=4.8e-15 Score=150.92 Aligned_cols=197 Identities=21% Similarity=0.196 Sum_probs=150.0
Q ss_pred EEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeee
Q 001352 848 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSL 927 (1093)
Q Consensus 848 ~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 927 (1093)
.+++|++ +|..|++|+.||++|||+..+...+.....|.+.|.++.|||||++|++.+.| ..+||++.++.... .
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a---~ 222 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALA---R 222 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhh---h
Confidence 7899999 89999999999999999988888888888899999999999999999999999 79999999973211 1
Q ss_pred ecCCCcccCCCCceEEEEccCC---CEE-EEE--eCCeEEEEEcCCcce-----eeeeecCCCCCEEEEEEccCCCEEEE
Q 001352 928 QTPDGVMTLAPSETHIQFHKDQ---TRF-LLV--HETHLAIYEAEELTC-----LKQWFPISSVPISQATFSCDCRMVFT 996 (1093)
Q Consensus 928 ~~~~~~~~~~~~v~~~~~s~dg---~~l-~~~--~d~~i~vwd~~~~~~-----~~~~~~~h~~~v~~~~fs~dg~~l~t 996 (1093)
..+.+.. .....+.|+.|+ .+. ++. .-+.|..|++..... .++.. .....|++++.|+||++++.
T Consensus 223 ~t~~~k~---~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~-~~~~siSsl~VS~dGkf~Al 298 (398)
T KOG0771|consen 223 KTPFSKD---EMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI-KRFKSISSLAVSDDGKFLAL 298 (398)
T ss_pred cCCcccc---hhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh-hccCcceeEEEcCCCcEEEE
Confidence 1111211 247789999988 333 332 334566666542221 11111 12457999999999999999
Q ss_pred EeCCCcEEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecCC
Q 001352 997 SFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1063 (1093)
Q Consensus 997 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~ 1063 (1093)
|+.||.|.|+++.+.+.+.-+. ..|...|. .+.|+| |.+.++..+.|.+..+..++-
T Consensus 299 GT~dGsVai~~~~~lq~~~~vk-------~aH~~~VT--~ltF~P-dsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 299 GTMDGSVAIYDAKSLQRLQYVK-------EAHLGFVT--GLTFSP-DSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eccCCcEEEEEeceeeeeEeeh-------hhheeeee--eEEEcC-CcCcccccccCCceeEEEEee
Confidence 9999999999998877664333 33555455 688999 589999999999999999865
No 210
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.63 E-value=4.2e-11 Score=123.25 Aligned_cols=412 Identities=11% Similarity=0.093 Sum_probs=229.8
Q ss_pred CceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEE-------EcCC
Q 001352 347 QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-------YSKH 419 (1093)
Q Consensus 347 g~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~-------~~d~ 419 (1093)
|.+++.++..| +..+++.+|+..+ +..|-+-|+...|+|||+.+|.. ...+
T Consensus 50 GD~IiFt~~Dd--lWe~slk~g~~~r--------------------itS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~ta 107 (668)
T COG4946 50 GDRIIFTCCDD--LWEYSLKDGKPLR--------------------ITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTA 107 (668)
T ss_pred CcEEEEEechH--HHHhhhccCCeeE--------------------EecccceeccccCCCCCcEEEEEEEEecCCCccc
Confidence 45567776643 4555667776654 55688889999999999999872 2233
Q ss_pred EEEEEEccCCCcccceEEeccccccEE-EEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeec--------CCCCeE
Q 001352 420 IVQLYAYHGGSDARQQLEIDAHVGNVN-DLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG--------HGAPVY 490 (1093)
Q Consensus 420 ~i~iwd~~~~~~~~~~~~~~~h~~~v~-~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~--------h~~~v~ 490 (1093)
.+.+.+.+.|+..+ + ++-| .+-+ -+-|.|||+ ++++...-.-..-|- ++..+.. .-++.+
T Consensus 108 Dly~v~~e~Ge~kR-i-TyfG--r~fT~VaG~~~dg~--iiV~TD~~tPF~q~~-----~lYkv~~dg~~~e~LnlGpat 176 (668)
T COG4946 108 DLYVVPSEDGEAKR-I-TYFG--RRFTRVAGWIPDGE--IIVSTDFHTPFSQWT-----ELYKVNVDGIKTEPLNLGPAT 176 (668)
T ss_pred cEEEEeCCCCcEEE-E-EEec--cccceeeccCCCCC--EEEEeccCCCcccce-----eeeEEccCCceeeeccCCcee
Confidence 47888888887443 2 2223 2233 346899998 666655433222221 1221111 112222
Q ss_pred EeeecccCCccEEEEEecC-----------C-eEEEEEcCCCC-ceEEecCCCCceEEEEEccCCCEEEEEecCCCCcee
Q 001352 491 SLCPHAKENIHFIFSISVD-----------G-KIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 557 (1093)
Q Consensus 491 ~~~~~~~~~~~~l~s~~~d-----------g-~i~vwd~~~~~-~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~ 557 (1093)
.+.+ .|| .++.|-.- | .=++|--..+. .-..+..-.+.|.+-..-.+.-++++ +-++-+.
T Consensus 177 hiv~---~dg-~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV~~RvYFls---D~eG~Gn 249 (668)
T COG4946 177 HIVI---KDG-IIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIVGERVYFLS---DHEGVGN 249 (668)
T ss_pred eEEE---eCC-EEEEccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCceEEcceEEEEe---cccCccc
Confidence 2222 122 22222110 0 01233222221 11111111222322222222223333 3345666
Q ss_pred EEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE---ecCCCC--C-CC---ce
Q 001352 558 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI---DAGGGL--P-EN---PR 628 (1093)
Q Consensus 558 i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~--~-~v---~~ 628 (1093)
++--|+....+.+...-+ .-.+-..+.||+.++- +..|.|++||..+.++...- +..... . .+ .-
T Consensus 250 lYSvdldGkDlrrHTnFt-----dYY~R~~nsDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~psky 323 (668)
T COG4946 250 LYSVDLDGKDLRRHTNFT-----DYYPRNANSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKY 323 (668)
T ss_pred eEEeccCCchhhhcCCch-----hccccccCCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHh
Confidence 777776644433222211 1223334667877665 44578999999876543221 111000 0 00 01
Q ss_pred EE-Eec-CCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeec
Q 001352 629 IC-FNK-NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE 706 (1093)
Q Consensus 629 v~-~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~ 706 (1093)
+. |++ +|.+++..+. |...|.+...+-.++.
T Consensus 324 ledfa~~~Gd~ia~VSR-GkaFi~~~~~~~~iqv---------------------------------------------- 356 (668)
T COG4946 324 LEDFAVVNGDYIALVSR-GKAFIMRPWDGYSIQV---------------------------------------------- 356 (668)
T ss_pred hhhhccCCCcEEEEEec-CcEEEECCCCCeeEEc----------------------------------------------
Confidence 11 333 5777777766 4555544332211111
Q ss_pred ccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccc-eeEEeeecCcccCcCcccccccCCcccC
Q 001352 707 AENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNG-VHLMWRWPRNDLTLSTEATTKVPPRLYQ 785 (1093)
Q Consensus 707 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg-~v~vw~~~~~~~~~~~~~~~~~~~~~~~ 785 (1093)
++...|.-..+..+++-++.+..|| .+-+++....
T Consensus 357 --------------------------~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~------------------ 392 (668)
T COG4946 357 --------------------------GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG------------------ 392 (668)
T ss_pred --------------------------CCCCceEEEEEccCCcceEEeccCCceEEEEecCCc------------------
Confidence 1233344455555666678888887 6777665432
Q ss_pred CCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeC-CeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEe
Q 001352 786 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM 864 (1093)
Q Consensus 786 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~ 864 (1093)
+ ..... +.-+.|.++..++||++++++.+ ..+.+.|+.+|.....-+...+-|+.++|+| +++++|-+-
T Consensus 393 ----e-~kr~e----~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYaf 462 (668)
T COG4946 393 ----E-VKRIE----KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAF 462 (668)
T ss_pred ----e-EEEee----CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEec
Confidence 2 11111 25567899999999999999986 7899999999987766666778899999999 999999988
Q ss_pred CCC----eEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEe
Q 001352 865 DDS----TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG 906 (1093)
Q Consensus 865 ~dg----~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s 906 (1093)
-+| .|+++|+.+++....-. ..+.=.+-+|.||+++|.--+
T Consensus 463 P~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 463 PEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred CcceeeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcEEEEEe
Confidence 776 89999999887654332 223334578999999887654
No 211
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.62 E-value=9.3e-12 Score=141.11 Aligned_cols=277 Identities=15% Similarity=0.117 Sum_probs=190.3
Q ss_pred CceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCC--CCeEEEEECCCCCEEEE
Q 001352 337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG--VSVNRVVWSPDGSLLGV 414 (1093)
Q Consensus 337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~V~~v~~s~dg~~las 414 (1093)
.+.+.++-. +||||- ....|.+||+.++..+.... +...+..|. ..+. -.+.++++
T Consensus 9 ~l~~~~~~~--~~llag--~gp~i~~yd~~s~~li~~~~-------------~~~~~~~H~~e~~~~-----l~~~~~v~ 66 (967)
T KOG0974|consen 9 PLNLPQLVS--DYLLAG--SGPEILVYDLSSGCLIRHLI-------------QSKILEVHRGEGKVK-----LLSGKIVT 66 (967)
T ss_pred cccchhhcc--ceeeec--CCCceEEeeCCchhHhhhhh-------------hhcccccccccccce-----eccceEEE
Confidence 344444444 465543 33679999999988775311 111133340 1111 12344555
Q ss_pred EEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCe-E-Ee
Q 001352 415 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV-Y-SL 492 (1093)
Q Consensus 415 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v-~-~~ 492 (1093)
+..-+.+..=+..-. .+..-.+.|....+.-+.+ .++.+..+..+.+||...+.....+....... . ++
T Consensus 67 ~~~~~~v~~~~~~~~-------~~~~~s~wi~g~~l~~e~k--~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~ 137 (967)
T KOG0974|consen 67 CAKSDEVYVKEASNQ-------IIERFSDWIFGAKLFEENK--KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSL 137 (967)
T ss_pred EEeecceeecchhhh-------hhhhccccccccchhhhcc--eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEE
Confidence 544333333222211 1112333444566666667 57777778899999998888777665322211 1 12
Q ss_pred eecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeee-e
Q 001352 493 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR-T 571 (1093)
Q Consensus 493 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~-~ 571 (1093)
-+-.+.+.-++++|+.-+.|.+|++...+....+.+|.+.+.++.++-||+++++++. |..+++|++.+++... .
T Consensus 138 ~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~Sd----DRsiRlW~i~s~~~~~~~ 213 (967)
T KOG0974|consen 138 IIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSD----DRSIRLWPIDSREVLGCT 213 (967)
T ss_pred EEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEec----CcceeeeecccccccCcc
Confidence 2223455578999999999999999865555578899999999999999999999987 6679999999998776 5
Q ss_pred eecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEE
Q 001352 572 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 651 (1093)
Q Consensus 572 ~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~ 651 (1093)
.-+|. ..+..++|.|+ .++++++|-+.++|+.+ +..+..+..|.. ..+..++..++...+++++.|+.+++|+
T Consensus 214 ~fgHs---aRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g-~~iw~~~~~~~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 214 GFGHS---ARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSG-KGIWKIAVPIGVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred ccccc---ceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhh-cceeEEEEcCCceEEEeeccCcchhhhh
Confidence 55666 89999999997 89999999999999765 444446665544 4589999999999999999999999999
Q ss_pred cCCC
Q 001352 652 TPES 655 (1093)
Q Consensus 652 ~~~~ 655 (1093)
....
T Consensus 287 l~~r 290 (967)
T KOG0974|consen 287 LNGR 290 (967)
T ss_pred hhcc
Confidence 8753
No 212
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.62 E-value=5.3e-14 Score=146.73 Aligned_cols=247 Identities=11% Similarity=0.077 Sum_probs=155.2
Q ss_pred ccCCCEEEEEe-CCeEEEEEccCceeEEEEC----CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC----------
Q 001352 812 SKNDAYLFSAS-GGVISLYIVMTFKTILTIM----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS---------- 876 (1093)
Q Consensus 812 s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~----~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~---------- 876 (1093)
.|.+--+.++- -|.+.+.|....+..+.+. -....++|+.|-|.+...+.++-.+|.+++||..-
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence 45666666675 4888888876522222111 12368999999996667777788999999997531
Q ss_pred ----cc--------------eeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCC
Q 001352 877 ----SE--------------VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAP 938 (1093)
Q Consensus 877 ----~~--------------~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 938 (1093)
+. .+..+.--.+.|...+|||||++||+.+.||.+||+|+.+.+ ++....... +
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e-----Llg~mkSYF---G 333 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE-----LLGVMKSYF---G 333 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHH-----HHHHHHhhc---c
Confidence 11 111122223568889999999999999999999999999844 333333333 3
Q ss_pred CceEEEEccCCCEEEE-EeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEe
Q 001352 939 SETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1017 (1093)
Q Consensus 939 ~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~ 1017 (1093)
...+++|||||++|++ |.|.-|.||.....+.+.. -.+|...|..|+|.| |.-+.-+++...=-|-........+
T Consensus 334 GLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR-GqGHkSWVs~VaFDp---ytt~~ee~~~~~~~~~~~~~~~~~~ 409 (636)
T KOG2394|consen 334 GLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR-GQGHKSWVSVVAFDP---YTTSTEEWNNFSGMDSTFSDVAHDF 409 (636)
T ss_pred ceEEEEEcCCccEEEecCCcceEEEEEeccceEEEe-ccccccceeeEeecc---cccccccccccccccccccchhccc
Confidence 7899999999999999 6888999999999888876 678999999999987 3332222111000000000000001
Q ss_pred ccccccCCCCCCCccceeEEEeCC-CCCCEEEEEeCCCcEEEEecCCCCCCcccCCCcc
Q 001352 1018 LSTAYLRPTTSCLHVYPHAIAAHP-LKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1075 (1093)
Q Consensus 1018 ~~~~~~~~~~~~~~v~~~~~~~~p-~d~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~ 1075 (1093)
+ ....+.....+ .+++-.+-+ .....|.+++.|.++.+||+.++... .+||.-
T Consensus 410 ~-~r~~~~~S~~~--~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~--~~~p~~ 463 (636)
T KOG2394|consen 410 E-IRANGTGSAEG--CPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLV--PHPPLY 463 (636)
T ss_pred c-cccCCCCCcCC--CcccccccccceEEEeecccccceEEEEecchhhcc--cCCchh
Confidence 0 00001110000 011110111 02357999999999999999876643 355554
No 213
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.62 E-value=1.5e-11 Score=139.54 Aligned_cols=198 Identities=15% Similarity=0.169 Sum_probs=155.0
Q ss_pred CCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCC-----CeEEEEECCC
Q 001352 334 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV-----SVNRVVWSPD 408 (1093)
Q Consensus 334 h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~V~~v~~s~d 408 (1093)
-.+.|....+.-+.+ .++.+..++.+.|||...+...... .+.. ...-+.++++
T Consensus 86 ~s~wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i--------------------~~~er~~l~~~~~~g~s~~ 144 (967)
T KOG0974|consen 86 FSDWIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKI--------------------QSDERCTLYSSLIIGDSAE 144 (967)
T ss_pred ccccccccchhhhcc-eEEEEEcCceEEEEecccCceehhc--------------------CCCceEEEEeEEEEeccCc
Confidence 344556677777776 4888888999999999887766431 1111 2223456788
Q ss_pred CCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeE-EeecCCC
Q 001352 409 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY-SFEGHGA 487 (1093)
Q Consensus 409 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~-~~~~h~~ 487 (1093)
.-++++|+.-+.|.+|+....+. ...+.||.+.|.++.|+.||. ++++.|.|.++++|++++++.+. ..-+|+.
T Consensus 145 ~~~i~~gsv~~~iivW~~~~dn~---p~~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsa 219 (967)
T KOG0974|consen 145 ELYIASGSVFGEIIVWKPHEDNK---PIRLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSA 219 (967)
T ss_pred EEEEEeccccccEEEEeccccCC---cceecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCcccccccc
Confidence 88999999999999999983321 114789999999999999999 89999999999999999998876 6678999
Q ss_pred CeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC-CceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001352 488 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 566 (1093)
Q Consensus 488 ~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 566 (1093)
.|..+++.+. .+++++.|-+.++|+.+..... .+..|. ..+..++..++...+++++. |+.+++|+....
T Consensus 220 Rvw~~~~~~n----~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~----Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 220 RVWACCFLPN----RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGN----DSTLKLWDLNGR 290 (967)
T ss_pred eeEEEEeccc----eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeecc----Ccchhhhhhhcc
Confidence 9999999654 8999999999999976543333 555554 47889999988888888876 667999997653
No 214
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.61 E-value=3.9e-14 Score=136.29 Aligned_cols=241 Identities=14% Similarity=0.139 Sum_probs=173.0
Q ss_pred CCCCeeEEEEccCCC----EEEEEeCCeEEEEEccCc--eeE--EEE-----CCCCCCeEEEEEcCCCCCEEEEEeCCCe
Q 001352 802 SQEAVPCFALSKNDA----YLFSASGGVISLYIVMTF--KTI--LTI-----MPPSPTATSLAFNPHDNNVIAIGMDDST 868 (1093)
Q Consensus 802 ~~~~v~~l~~s~dg~----~la~~~dg~i~iwd~~~~--~~~--~~~-----~~~~~~i~~l~~s~~d~~~lasg~~dg~ 868 (1093)
|..+++.+.|.|+.. -++..++..+++|.+... +.. ..+ ..+..+++++.|..-+.++|.+.+-|-+
T Consensus 95 ~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTT 174 (364)
T KOG0290|consen 95 HPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTT 174 (364)
T ss_pred CCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCe
Confidence 888999999999873 233345678999998732 211 111 2355689999999878899999999999
Q ss_pred EEEEEcCCcc---eeeecccccCCeEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEE
Q 001352 869 ILIYNARSSE---VISKLEGHSKRVTGLVFSDAL-NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 944 (1093)
Q Consensus 869 i~iwd~~~~~---~~~~l~~h~~~V~~l~~s~dg-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 944 (1093)
..|||+.++. ...++-+|..+|..++|+.++ +.+||+|.||.||++|+..-+..+ .+....... .+...++
T Consensus 175 CTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHST--IIYE~p~~~---~pLlRLs 249 (364)
T KOG0290|consen 175 CTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHST--IIYEDPSPS---TPLLRLS 249 (364)
T ss_pred EEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccce--EEecCCCCC---Ccceeec
Confidence 9999999863 457788999999999999865 679999999999999998754222 333322211 3588899
Q ss_pred EccCC-CEEEE-E-eCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccC-CCEEEEEeCCCcEEEEEcCCCceEEEeccc
Q 001352 945 FHKDQ-TRFLL-V-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCD-CRMVFTSFVDGTLSIHEASNLEVQCRILST 1020 (1093)
Q Consensus 945 ~s~dg-~~l~~-~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~d-g~~l~t~~~dg~v~vwd~~~~~~~~~~~~~ 1020 (1093)
|++.. +++|+ . ....|.|.|+......-.-+.+|.+.|..++|-|. +..|.|+|.|..+.+||+.+--......+.
T Consensus 250 wnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPi 329 (364)
T KOG0290|consen 250 WNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPI 329 (364)
T ss_pred cCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCch
Confidence 98865 56666 4 44579999998665444446789999999999995 467999999999999999865331112211
Q ss_pred cccCCCCCCCccceeEEEeCCCCCCEEEEEeC
Q 001352 1021 AYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLT 1052 (1093)
Q Consensus 1021 ~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~ 1052 (1093)
.... .+..|. .+.|+|..+.-++.+..
T Consensus 330 lay~---a~~EVN--qi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 330 LAYT---AGGEVN--QIQWSSSQPDWIAICFG 356 (364)
T ss_pred hhhh---ccceee--eeeecccCCCEEEEEec
Confidence 1111 134455 45666655666766553
No 215
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=8.1e-15 Score=151.00 Aligned_cols=296 Identities=14% Similarity=0.141 Sum_probs=222.3
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352 393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 472 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 472 (1093)
|.+|.+.|..|.|+..|..|++|+.|..|.+||+.++...... ..||...|....|-|.....-+++++.||.+++=.
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f--~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSF--ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred ccCCCCccceeeecccCceeeccCccceEEeehhhccCccccc--ccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 7789999999999999999999999999999999998754432 34899999988898865433699999999999876
Q ss_pred CC-CCce--eEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC---CCC---ceEEEEEccCCC
Q 001352 473 AV-TGSR--TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA---PGL---GCTRMAYSANGR 543 (1093)
Q Consensus 473 ~~-~~~~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---~~~---~v~~~~~s~d~~ 543 (1093)
+. +|.+ ...+..|.++|..++.-|.. -..|.+++.|+.+.-+|++.......+.. +.. ....++..|...
T Consensus 216 i~~t~~~e~t~rl~~h~g~vhklav~p~s-p~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt 294 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGPVHKLAVEPDS-PKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT 294 (559)
T ss_pred eccccceecceecccccCccceeeecCCC-CCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence 54 4433 34556799999999876543 35799999999999999987665433322 222 457788888766
Q ss_pred -EEEEEecCCCCceeEEEEeCCCCee------eeeeecccc---cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC--C
Q 001352 544 -RLFSCGTSKEGESFLVEWNESEGAI------KRTYQGLQL---QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--V 611 (1093)
Q Consensus 544 -~l~~~~~~~~~~~~i~iwd~~~~~~------~~~~~~~~~---~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~--~ 611 (1093)
.+++++. +.++++||.+.-.. +..+..+.. ..-.|++++|+.++.-+++...|-.|+++...- |
T Consensus 295 ~~faVgG~----dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G 370 (559)
T KOG1334|consen 295 NEFAVGGS----DQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG 370 (559)
T ss_pred cccccCCh----hhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence 5666654 66789998764322 223322221 123589999998888888888888999995432 2
Q ss_pred ----------ceEEE-EecCCCCCCCceEEE-ecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCce
Q 001352 612 ----------QLLTT-IDAGGGLPENPRICF-NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 679 (1093)
Q Consensus 612 ----------~~~~~-~~~~~~~~~v~~v~~-s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 679 (1093)
..+.. +.+|.....|..+-| .|...++++|++=|.|.||+-.+++.++.+.+-..-|+|+.-+
T Consensus 371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpH----- 445 (559)
T KOG1334|consen 371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPH----- 445 (559)
T ss_pred CCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCC-----
Confidence 12222 455555555777765 5788999999999999999999999999999888888888776
Q ss_pred eeeeccCCceEecCCCCCCCccceeecccccceeccee
Q 001352 680 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 717 (1093)
Q Consensus 680 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~ 717 (1093)
|--..|++.+-|..|+||...
T Consensus 446 -----------------P~~PvLAsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 446 -----------------PHLPVLASSGIDHDVKIWTPL 466 (559)
T ss_pred -----------------CCCchhhccCCccceeeecCC
Confidence 445668899999999999853
No 216
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.61 E-value=1.4e-13 Score=134.63 Aligned_cols=230 Identities=14% Similarity=0.175 Sum_probs=175.5
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEEC-C
Q 001352 396 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA-V 474 (1093)
Q Consensus 396 h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~-~ 474 (1093)
-..+|+|.||++|+..+|++.....|.||............++..|...|+.++|+|..+ .|++++.|..-+||.. .
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCC
Confidence 347899999999999999999999999999998887777778999999999999999998 7999999999999998 3
Q ss_pred CC--ceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceE----EecCCCCceEEEEEccCCCEEEEE
Q 001352 475 TG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV----DYDAPGLGCTRMAYSANGRRLFSC 548 (1093)
Q Consensus 475 ~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~----~~~~~~~~v~~~~~s~d~~~l~~~ 548 (1093)
.+ ++...+..++...+++.|+|.+ +.+++|+....|.||-++....-. .-......|.++.|+|++-+|++|
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 33 3445566789999999997655 589999999999999776654332 223345678999999999999998
Q ss_pred ecCCCCceeEEEEeC-----CC-------------CeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001352 549 GTSKEGESFLVEWNE-----SE-------------GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 610 (1093)
Q Consensus 549 ~~~~~~~~~i~iwd~-----~~-------------~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~ 610 (1093)
+. |+..+++.. +. |+++..+.. ..+.+..+.|+|.|+.|+-.+.|.++.+-|...
T Consensus 165 s~----D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~---~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~ 237 (361)
T KOG1523|consen 165 ST----DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASS---SGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAG 237 (361)
T ss_pred cc----CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhcc---CCCceeeeEeCCCCCEeeEecCCCceEEeecCC
Confidence 86 444666532 11 222333322 247899999999999999999999999999877
Q ss_pred Cc-eEEEEecCCCCCCCceEEEecCCCEE
Q 001352 611 VQ-LLTTIDAGGGLPENPRICFNKNGTLL 638 (1093)
Q Consensus 611 ~~-~~~~~~~~~~~~~v~~v~~s~~~~~l 638 (1093)
.. .+....... .+..++.|-.+...+
T Consensus 238 p~~~v~~~~~~~--lP~ls~~~ise~~vv 264 (361)
T KOG1523|consen 238 PSERVQSVATAQ--LPLLSVSWISENSVV 264 (361)
T ss_pred Cchhccchhhcc--CCceeeEeecCCcee
Confidence 65 233322221 234566665544433
No 217
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.60 E-value=8.4e-14 Score=155.37 Aligned_cols=252 Identities=17% Similarity=0.202 Sum_probs=184.5
Q ss_pred CCCceeeeecCCCceEEEEEccCCcEEEEecCCCcee--EEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCC--
Q 001352 335 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL--FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS-- 410 (1093)
Q Consensus 335 ~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~-- 410 (1093)
...|.|+.|+|....++|.|..+|+|.+||+..+... ... ......|..+|+.+.|-.+-.
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~l---------------s~~~~sh~~~v~~vvW~~~~~~~ 306 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGL---------------SALEVSHSEPVTAVVWLQNEHNT 306 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccc---------------ccccccCCcCeEEEEEeccCCCC
Confidence 3499999999998889999999999999999887652 111 112556999999999987544
Q ss_pred EEEEEEcCCEEEEEEccCCCcccceEEec---------cccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE---CCCCc-
Q 001352 411 LLGVAYSKHIVQLYAYHGGSDARQQLEID---------AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD---AVTGS- 477 (1093)
Q Consensus 411 ~las~~~d~~i~iwd~~~~~~~~~~~~~~---------~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd---~~~~~- 477 (1093)
-+++++.||.|+.|++..-........+. .-...+++++|.+.... .++.|+.+|.|.-=+ ...+.
T Consensus 307 ~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe~G~v~~~~r~g~~~~~~ 385 (555)
T KOG1587|consen 307 EFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTEEGKVYKGCRKGYTPAPE 385 (555)
T ss_pred ceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcCCcEEEEEeccCCccccc
Confidence 49999999999999887543211111111 12236899999988766 688899999887733 22222
Q ss_pred ----eeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcC-CCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001352 478 ----RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 552 (1093)
Q Consensus 478 ----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~ 552 (1093)
.+..+..|.++|+++.++|-.. ..+++++ |-++++|.-. ...+...+..+...+++++|||-.-.++++.
T Consensus 386 ~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~--- 460 (555)
T KOG1587|consen 386 VSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATV--- 460 (555)
T ss_pred ccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEE---
Confidence 2335567899999999877654 2444444 9999999887 5666667777777799999999876666554
Q ss_pred CCceeEEEEeCCCCee--eeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001352 553 EGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 610 (1093)
Q Consensus 553 ~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~ 610 (1093)
+++|.+.+||+..... +.+..... .....+.|+++|+.+++|...|++.+|++..
T Consensus 461 d~~G~l~iWDLl~~~~~Pv~s~~~~~---~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 461 DGDGNLDIWDLLQDDEEPVLSQKVCS---PALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cCCCceehhhhhccccCCcccccccc---cccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 3478899999875433 33322222 5677888999999999999999999999864
No 218
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.60 E-value=1.1e-13 Score=157.87 Aligned_cols=364 Identities=12% Similarity=0.062 Sum_probs=222.2
Q ss_pred CceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCc-cccccccCccc
Q 001352 655 SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPS-ECQSLLLPSKV 733 (1093)
Q Consensus 655 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~-~~~~~~~~~~~ 733 (1093)
|..+..+..|...+..++.+ ++++.++++|+.||+|++|+...-... ....-...-..
T Consensus 1038 G~lVAhL~Ehs~~v~k~a~s---------------------~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~ 1096 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVS---------------------SEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSP 1096 (1431)
T ss_pred ceEeehhhhccccccceeec---------------------CCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEec
Confidence 34556666677777666666 577899999999999999996543322 11111111111
Q ss_pred cccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEcc
Q 001352 734 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 813 (1093)
Q Consensus 734 ~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 813 (1093)
..+.+..+...+++..+++++.||.+++.++..... ... ...+........ ...-|..-+|..
T Consensus 1097 ~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~----~~~-----------~~~~~ri~n~~~--~g~vv~m~a~~~ 1159 (1431)
T KOG1240|consen 1097 EGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNV----SKR-----------VATQVRIPNLKK--DGVVVSMHAFTA 1159 (1431)
T ss_pred cCCceEEEEeccCCCeEEEEcCCCeEEEEEcccccc----ccc-----------eeeeeecccccC--CCceEEeecccc
Confidence 467889999999999999999999999998765210 000 011111111111 222233333433
Q ss_pred C-CC-EEEEEeC-CeEEEEEccCceeEEEEC--CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecc-ccc
Q 001352 814 N-DA-YLFSASG-GVISLYIVMTFKTILTIM--PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-GHS 887 (1093)
Q Consensus 814 d-g~-~la~~~d-g~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~-~h~ 887 (1093)
. +. .++.+.+ +.|..||+.......+++ ...+.|++++.+| .+.++++|+..|.+.+||++-+.++.... ++.
T Consensus 1160 ~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~ 1238 (1431)
T KOG1240|consen 1160 IVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPAR 1238 (1431)
T ss_pred cccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecC-CceEEEEecCCceEEEEEeecCceeecccCccc
Confidence 2 33 5666664 889999998776655544 3457899999999 89999999999999999999888776654 355
Q ss_pred CCeEEEEEeCCC---CEEEEEe--CCCcEEEEeCCCCceeeeeeeecCCC---cc--------cCCCCceEEEEccCCCE
Q 001352 888 KRVTGLVFSDAL---NILVSSG--GDAQIFVWDVDGWGIQTCRSLQTPDG---VM--------TLAPSETHIQFHKDQTR 951 (1093)
Q Consensus 888 ~~V~~l~~s~dg---~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~---~~--------~~~~~v~~~~~s~dg~~ 951 (1093)
.+|..+...|-. ...++++ ..+.|.+|++.+|............. +. .........++...+.+
T Consensus 1239 ~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~ 1318 (1431)
T KOG1240|consen 1239 APIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGF 1318 (1431)
T ss_pred CCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCce
Confidence 778888777643 3555544 47789999999986544222210000 00 00011223334444455
Q ss_pred EEE-EeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcE-EEE-----EcCCCceEEEeccccccC
Q 001352 952 FLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTL-SIH-----EASNLEVQCRILSTAYLR 1024 (1093)
Q Consensus 952 l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v-~vw-----d~~~~~~~~~~~~~~~~~ 1024 (1093)
+.+ ++|..|+.||....+...-...+.+.......++.+ ..++.++.--.. ... +...++...........+
T Consensus 1319 ~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~-~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~p 1397 (1431)
T KOG1240|consen 1319 LLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYD-LSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDP 1397 (1431)
T ss_pred eeecCCccceeeccCCCcccccccccCccccccccchhcc-ccccCCCccchhhhhhhhhcCchhhcccccccccCCCCC
Confidence 555 689999999998765542222232223333333332 223322211000 011 111122234455566677
Q ss_pred CCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEe
Q 001352 1025 PTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1060 (1093)
Q Consensus 1025 ~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~ 1060 (1093)
...|.+.|..++....+ ..+|++++.||.|.+|.
T Consensus 1398 s~~H~d~Itdma~~~~~--q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1398 STYHHDPITDMATLKSE--QPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred cccccchhhhhhhhccC--ccEEEEecCCCeeeecC
Confidence 77789999988888776 47999999999999994
No 219
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=4.3e-14 Score=160.48 Aligned_cols=225 Identities=18% Similarity=0.191 Sum_probs=148.5
Q ss_pred HHHhhccCCCCceeeeecCCCceEEEEEccC---CcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEE
Q 001352 327 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV---GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 403 (1093)
Q Consensus 327 ~~~~l~~h~~~V~~~~~spdg~~llasg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 403 (1093)
..+.+..|...+...+|||||+++ |..+.+ ..|.+||+.+++...... +.+| ..++
T Consensus 195 ~~~~lt~~~~~v~~p~wSPDG~~l-a~~s~~~~~~~i~i~dl~tg~~~~l~~-----------------~~g~---~~~~ 253 (429)
T PRK01742 195 NQFIVNRSSQPLMSPAWSPDGSKL-AYVSFENKKSQLVVHDLRSGARKVVAS-----------------FRGH---NGAP 253 (429)
T ss_pred CceEeccCCCccccceEcCCCCEE-EEEEecCCCcEEEEEeCCCCceEEEec-----------------CCCc---cCce
Confidence 345677788889999999999974 554432 469999999886432111 2233 3468
Q ss_pred EECCCCCEEEEEE-cCCEEEEE--EccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCC-cee
Q 001352 404 VWSPDGSLLGVAY-SKHIVQLY--AYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRT 479 (1093)
Q Consensus 404 ~~s~dg~~las~~-~d~~i~iw--d~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~~~ 479 (1093)
+|||||++|++++ .+|.+.|| |+.+++. + .+..+...+...+|+|||+. +++++..++...||++... ...
T Consensus 254 ~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~---~lt~~~~~~~~~~wSpDG~~-i~f~s~~~g~~~I~~~~~~~~~~ 328 (429)
T PRK01742 254 AFSPDGSRLAFASSKDGVLNIYVMGANGGTP-S---QLTSGAGNNTEPSWSPDGQS-ILFTSDRSGSPQVYRMSASGGGA 328 (429)
T ss_pred eECCCCCEEEEEEecCCcEEEEEEECCCCCe-E---eeccCCCCcCCEEECCCCCE-EEEEECCCCCceEEEEECCCCCe
Confidence 9999999998875 57765555 5555542 2 45567778889999999995 3444556788888876532 222
Q ss_pred EEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEE
Q 001352 480 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 559 (1093)
Q Consensus 480 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~ 559 (1093)
..+ .+.. ....| ++||+.|+..+.++ +.+||+.++........ .....+.|+|||+++++++.++. ...+.
T Consensus 329 ~~l-~~~~--~~~~~--SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~~g~-~~~l~ 399 (429)
T PRK01742 329 SLV-GGRG--YSAQI--SADGKTLVMINGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSSTQGL-GKVLQ 399 (429)
T ss_pred EEe-cCCC--CCccC--CCCCCEEEEEcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEcCCC-ceEEE
Confidence 333 3433 34455 55778888887765 45599887765433222 23356789999999999876322 22233
Q ss_pred EEeCCCCeeeeeeecccccCCCeEEEEEcCC
Q 001352 560 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTA 590 (1093)
Q Consensus 560 iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~ 590 (1093)
+++ .+|..++.+..+. +.+...+|+|-
T Consensus 400 ~~~-~~G~~~~~l~~~~---g~~~~p~wsp~ 426 (429)
T PRK01742 400 LVS-ADGRFKARLPGSD---GQVKFPAWSPY 426 (429)
T ss_pred EEE-CCCCceEEccCCC---CCCCCcccCCC
Confidence 444 3577777777666 67788889874
No 220
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=9.8e-13 Score=130.72 Aligned_cols=288 Identities=16% Similarity=0.167 Sum_probs=190.0
Q ss_pred CceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC-CCEEEEE
Q 001352 337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-GSLLGVA 415 (1093)
Q Consensus 337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d-g~~las~ 415 (1093)
.+..++|++--- -+|++..|-.|+|||-.......- .......|+|++|-|. ++-|++|
T Consensus 100 dlr~~aWhqH~~-~fava~nddvVriy~ksst~pt~L-------------------ks~sQrnvtclawRPlsaselavg 159 (445)
T KOG2139|consen 100 DLRGVAWHQHII-AFAVATNDDVVRIYDKSSTCPTKL-------------------KSVSQRNVTCLAWRPLSASELAVG 159 (445)
T ss_pred ceeeEeechhhh-hhhhhccCcEEEEeccCCCCCcee-------------------cchhhcceeEEEeccCCcceeeee
Confidence 677888988543 377888999999999776222110 1224568999999995 5678888
Q ss_pred EcCCEEEEEEccCCCc-----------ccceEEeccccccEEEEEeeCCCCcEEEEEEcC-CCcEEEEECCCCceeEEee
Q 001352 416 YSKHIVQLYAYHGGSD-----------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFE 483 (1093)
Q Consensus 416 ~~d~~i~iwd~~~~~~-----------~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~-d~~i~vwd~~~~~~~~~~~ 483 (1093)
+..| |.||....--. ..+...-.+| .+|+++.|.+||. .+++++. |..|.|||..+|.++.-..
T Consensus 160 Cr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL~~ 235 (445)
T KOG2139|consen 160 CRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPLIP 235 (445)
T ss_pred ecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCcccccc
Confidence 8877 99998753211 1112233455 6899999999999 6888775 5679999999998876554
Q ss_pred cCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001352 484 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 563 (1093)
Q Consensus 484 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 563 (1093)
...+.+.-+.|+| |+.+|+++.-|+..++|...............+.|...+|+|+|++|+..... ...++-...
T Consensus 236 ~glgg~slLkwSP--dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sg---sp~lysl~f 310 (445)
T KOG2139|consen 236 KGLGGFSLLKWSP--DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSG---SPRLYSLTF 310 (445)
T ss_pred cCCCceeeEEEcC--CCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcC---CceEEEEee
Confidence 5567788888955 66799999999999999554433333333344589999999999988766532 222222111
Q ss_pred --CCCee-----------e------eeeecccccCCCeEEEEEcCCCCEEEEEeCCC--------cEEEEECCCCceEEE
Q 001352 564 --SEGAI-----------K------RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--------VIKIWDMNKVQLLTT 616 (1093)
Q Consensus 564 --~~~~~-----------~------~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg--------~i~iwd~~~~~~~~~ 616 (1093)
+.+.. + ....+...-.+.+.+++|.|.|.++++.-..+ .|.+||....-.+..
T Consensus 311 ~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vel 390 (445)
T KOG2139|consen 311 DGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVEL 390 (445)
T ss_pred cCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEE
Confidence 11100 0 11112111236788999999999999865433 366787765444433
Q ss_pred EecC-CCCCCCceEEEec---CCCEEEEEECCCeEEEEEcC
Q 001352 617 IDAG-GGLPENPRICFNK---NGTLLAVIANENRIKILETP 653 (1093)
Q Consensus 617 ~~~~-~~~~~v~~v~~s~---~~~~l~~~~~dg~i~iw~~~ 653 (1093)
.... .....-..++|+| ++.+|.++-..|.+.-|++.
T Consensus 391 s~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 391 SYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred EecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 3111 1112245677776 67888888888888877654
No 221
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=2.6e-13 Score=142.73 Aligned_cols=284 Identities=14% Similarity=0.193 Sum_probs=208.7
Q ss_pred cCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEE
Q 001352 333 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 412 (1093)
Q Consensus 333 ~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~l 412 (1093)
+|...-+.+..||||+|++|+|..-..|++||+..-.....+.+ ....|.-.-.|.|=..+
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhl-------------------Dae~V~feiLsDD~SK~ 109 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHL-------------------DAEVVDFEILSDDYSKS 109 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecc-------------------cccceeEEEeccchhhh
Confidence 46778899999999999999999999999999988765544221 24566666777777777
Q ss_pred EEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEe
Q 001352 413 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 492 (1093)
Q Consensus 413 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~ 492 (1093)
+.-..|.+|.+..... ...+. .+ ...-.+++++.-... |+.++....|+-.+++.|+.+..+....+.++++
T Consensus 110 v~L~~DR~IefHak~G-~hy~~--RI---P~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v 181 (703)
T KOG2321|consen 110 VFLQNDRTIEFHAKYG-RHYRT--RI---PKFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVV 181 (703)
T ss_pred eEeecCceeeehhhcC-eeeee--ec---CcCCccccccCCCcc--EEEeecCcceEEEEccccccccccccccccceee
Confidence 7777888877654332 11110 11 112234555544443 3444445568999999999999998888999999
Q ss_pred eecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC-----------CceEEEEEccCCCEEEEEecCCCCceeEEEE
Q 001352 493 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-----------LGCTRMAYSANGRRLFSCGTSKEGESFLVEW 561 (1093)
Q Consensus 493 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-----------~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iw 561 (1093)
.+++.. .+|++|+.+|.|.+||.+.......+.... ..|+++.|+.+|-.+++|+. .|.+.+|
T Consensus 182 ~in~~h--gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts----~G~v~iy 255 (703)
T KOG2321|consen 182 SINEEH--GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS----TGSVLIY 255 (703)
T ss_pred eecCcc--ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc----CCcEEEE
Confidence 886543 589999999999999998877655443321 14899999999999999986 6679999
Q ss_pred eCCCCeeeeeeecccccCCCeEEEEEcCCCCE-EEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEE
Q 001352 562 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ-ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV 640 (1093)
Q Consensus 562 d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 640 (1093)
|+++.+++..-.... .-+|..+.|.+.+.. -+.......++|||-.+|+....+... ..++.+|+-|++.++++
T Consensus 256 DLRa~~pl~~kdh~~--e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt---~~lND~C~~p~sGm~f~ 330 (703)
T KOG2321|consen 256 DLRASKPLLVKDHGY--ELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPT---SDLNDFCFVPGSGMFFT 330 (703)
T ss_pred EcccCCceeecccCC--ccceeeecccccCCCceEEecchHHhhhcccccCCceeecccc---CCcCceeeecCCceEEE
Confidence 999988765433222 367889999776332 233344567999999999999888654 44899999999999999
Q ss_pred EECCCeEEEEEcCC
Q 001352 641 IANENRIKILETPE 654 (1093)
Q Consensus 641 ~~~dg~i~iw~~~~ 654 (1093)
+-.++.+..|=+..
T Consensus 331 Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 331 ANESSKMHTYYIPS 344 (703)
T ss_pred ecCCCcceeEEccc
Confidence 99988887776654
No 222
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.59 E-value=5.1e-12 Score=124.01 Aligned_cols=241 Identities=13% Similarity=0.174 Sum_probs=169.3
Q ss_pred CeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcC-----CCcEEEEEC
Q 001352 399 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-----DKTIKVWDA 473 (1093)
Q Consensus 399 ~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~-----d~~i~vwd~ 473 (1093)
...+++|+.|..-+++|..+| .+||+.+--+... .-..+.+.+.-+...--.+.+.|+-|+. -..+.|||=
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~---~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESA---SRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhh---hhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEec
Confidence 445599999999999998888 8999987522111 1111222222222222233323443332 246999997
Q ss_pred CCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcC-CCCceEEecCCCC--ceEEEEEccCCCEEEEEec
Q 001352 474 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGARVDYDAPGL--GCTRMAYSANGRRLFSCGT 550 (1093)
Q Consensus 474 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~--~v~~~~~s~d~~~l~~~~~ 550 (1093)
...+++.++. ...+|.++++... .|++ -..+.|.||.+. +.+....+..... ..-+++-+.+...|+.-+.
T Consensus 83 ~k~~~i~el~-f~~~I~~V~l~r~----riVv-vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~ 156 (346)
T KOG2111|consen 83 LKERCIIELS-FNSEIKAVKLRRD----RIVV-VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGF 156 (346)
T ss_pred ccCcEEEEEE-eccceeeEEEcCC----eEEE-EecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCC
Confidence 7788888886 7789999998542 3443 356789999887 4455555444332 2333333333344444332
Q ss_pred CCCCceeEEEEeCCCCee--eeeeecccccCCCeEEEEEcCCCCEEEEEeCCCc-EEEEECCCCceEEEEecCCCCCCCc
Q 001352 551 SKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPENP 627 (1093)
Q Consensus 551 ~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~ 627 (1093)
..|.|++-|+..-+. ...+..|. ..|.+++.+.+|..++++|..|+ |||||..+|+.+..+........+.
T Consensus 157 ---k~GqvQi~dL~~~~~~~p~~I~AH~---s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy 230 (346)
T KOG2111|consen 157 ---KTGQVQIVDLASTKPNAPSIINAHD---SDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY 230 (346)
T ss_pred ---ccceEEEEEhhhcCcCCceEEEccc---CceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence 357799999876555 36667777 99999999999999999999998 7899999999999998776667899
Q ss_pred eEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001352 628 RICFNKNGTLLAVIANENRIKILETPES 655 (1093)
Q Consensus 628 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 655 (1093)
+++|||+..+||++++.|++.|+.+...
T Consensus 231 ~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 231 CIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 9999999999999999999999998864
No 223
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=2.3e-14 Score=149.29 Aligned_cols=245 Identities=13% Similarity=0.185 Sum_probs=170.4
Q ss_pred HHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEEC
Q 001352 327 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 406 (1093)
Q Consensus 327 ~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 406 (1093)
.-+.|.||++-|+|++|+.||. +|++|+.|-.+.|||.-..+.++. +-+||...|.++.|-
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllhs------------------I~TgHtaNIFsvKFv 102 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHS------------------ISTGHTANIFSVKFV 102 (758)
T ss_pred hhhhhccccceecceeecCCCC-EEeecCCcceEEeecchhcceeee------------------eecccccceeEEeee
Confidence 4567899999999999999998 799999999999999987777654 256899999999999
Q ss_pred C--CCCEEEEEEcCCEEEEEEccCCCc-------ccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCc
Q 001352 407 P--DGSLLGVAYSKHIVQLYAYHGGSD-------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 477 (1093)
Q Consensus 407 ~--dg~~las~~~d~~i~iwd~~~~~~-------~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~ 477 (1093)
| +.+.+++|..|..|+++|+...+. ..+...+..|..+|..++-.|++.. .+.+++.||+|+-+|+....
T Consensus 103 P~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph 181 (758)
T KOG1310|consen 103 PYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPH 181 (758)
T ss_pred ccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCc
Confidence 9 578899999999999999985211 2223345679999999999999955 79999999999999997532
Q ss_pred -ee------EE---eecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceE----E-ecCCCCceEEEE-EccC
Q 001352 478 -RT------YS---FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV----D-YDAPGLGCTRMA-YSAN 541 (1093)
Q Consensus 478 -~~------~~---~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~----~-~~~~~~~v~~~~-~s~d 541 (1093)
+. .. +...--...++.++|.. ..+|+.|+.|-..++||.+...... . ...+.....|+. |+|.
T Consensus 182 ~c~p~~~~~~~l~ny~~~lielk~ltisp~r-p~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~ 260 (758)
T KOG1310|consen 182 VCNPDEDCPSILVNYNPQLIELKCLTISPSR-PYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPG 260 (758)
T ss_pred cCCccccccHHHHHhchhhheeeeeeecCCC-CceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCc
Confidence 11 11 11111234567777664 3699999999999999964321111 0 011111222222 2222
Q ss_pred CCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE
Q 001352 542 GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 617 (1093)
Q Consensus 542 ~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 617 (1093)
+- .. ..|..... -..++.++|+|+|.-+++.-....|+++|+..++....+
T Consensus 261 hl----kn--------------~~gn~~~~-------~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 261 HL----KN--------------SQGNLDRY-------ITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred cc----cC--------------cccccccc-------eeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 21 00 00111000 023677899999988888666678999999987765544
No 224
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.58 E-value=5.2e-09 Score=127.14 Aligned_cols=539 Identities=10% Similarity=0.103 Sum_probs=300.5
Q ss_pred CCCCCeEEEEECCCCCEEEEEEcCCEEEEE----EccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEE
Q 001352 395 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLY----AYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 470 (1093)
Q Consensus 395 ~h~~~V~~v~~s~dg~~las~~~d~~i~iw----d~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~v 470 (1093)
...+.|.++.|-+|..-|+.+..+|.|.+. +..+.. +. ....-...|.+++||||+. +|+....++++.+
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E---~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~ 146 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IE---IVGSVDSGILAASWSPDEE--LLALVTGEGNLLL 146 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eE---EEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEE
Confidence 355789999999999999999999999999 444432 11 2334567899999999999 5666665777766
Q ss_pred EECC---------------C--------CceeEEeecCC------------------CCe----EEeeecccCCccEEEE
Q 001352 471 WDAV---------------T--------GSRTYSFEGHG------------------APV----YSLCPHAKENIHFIFS 505 (1093)
Q Consensus 471 wd~~---------------~--------~~~~~~~~~h~------------------~~v----~~~~~~~~~~~~~l~s 505 (1093)
-+-. . |+.-..|.|.. +.+ ..+.+++.+||.++++
T Consensus 147 mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAV 226 (928)
T PF04762_consen 147 MTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAV 226 (928)
T ss_pred EeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEE
Confidence 5310 0 11111121100 001 1233444789999998
Q ss_pred Eec---C---CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeeccc-cc
Q 001352 506 ISV---D---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ-LQ 578 (1093)
Q Consensus 506 ~~~---d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~-~~ 578 (1093)
.+. . ..+|||+-+ +..........+--.+++|.|.|+++++.... .....|..|. ++|-....|.-.. ..
T Consensus 227 ss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~-~~~~~VvFfE-rNGLrhgeF~l~~~~~ 303 (928)
T PF04762_consen 227 SSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRL-PDRHDVVFFE-RNGLRHGEFTLRFDPE 303 (928)
T ss_pred EEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEc-CCCcEEEEEe-cCCcEeeeEecCCCCC
Confidence 875 3 469999755 33222333333344678999999999988753 3356677776 4555444444321 12
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--EEEEecCCCCCCCceEEEec-CCCEEEEEECCCeEEEEEcCCC
Q 001352 579 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL--LTTIDAGGGLPENPRICFNK-NGTLLAVIANENRIKILETPES 655 (1093)
Q Consensus 579 ~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iw~~~~~ 655 (1093)
...|..+.|++++..|+..-.|. |.+|-..+... .+.+..... ..+..+.|+| +...|.+.+.+|.+..++..-.
T Consensus 304 ~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~-~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~ 381 (928)
T PF04762_consen 304 EEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSS-ESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWD 381 (928)
T ss_pred CceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCC-CCCCceEECCCCCCEEEEEecCCcEEEEEEEEE
Confidence 36799999999999999877655 99999887653 334443322 2345699999 4556778887788877665411
Q ss_pred ceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceee---ccCccccccccCcc
Q 001352 656 NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF---ARPSECQSLLLPSK 732 (1093)
Q Consensus 656 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~---~~~~~~~~~~~~~~ 732 (1093)
....... .|+..-.+..-...++.+-.+.. +.|.....+.
T Consensus 382 v~~s~~~---------------------------------~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~---- 424 (928)
T PF04762_consen 382 VSRSPGS---------------------------------SPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE---- 424 (928)
T ss_pred EEecCCC---------------------------------CccCceEEEEEeCCeEEEecccccCCCchHhceEEc----
Confidence 0000000 01000000000112233322211 1122222222
Q ss_pred ccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEc
Q 001352 733 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS 812 (1093)
Q Consensus 733 ~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 812 (1093)
-...|..++|++++..+++...||.+.+|.++...............+ ... . ...... ......+..++|.
T Consensus 425 -~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~---~~~--~-~~~~~~--~~~~~~~~~~~~~ 495 (928)
T PF04762_consen 425 -LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSI---SLD--S-MDISDS--ELPLGSLRQLAWL 495 (928)
T ss_pred -CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhc---ccc--c-cccccc--ccccccEEEEEEe
Confidence 345899999999999899999999999999766432210000000000 000 0 000000 0134567788888
Q ss_pred cCCCEEEEEeC----CeEEEEEccCce---eEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcce-eeecc
Q 001352 813 KNDAYLFSASG----GVISLYIVMTFK---TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV-ISKLE 884 (1093)
Q Consensus 813 ~dg~~la~~~d----g~i~iwd~~~~~---~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~-~~~l~ 884 (1093)
.+..+++.... ..+.++++...+ ...........+..+...+ +...++.-..+|.+...+...... +..|.
T Consensus 496 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp 574 (928)
T PF04762_consen 496 NDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSP-DSGSLYIQTNDGKVFQLSSDGELSQIVKFP 574 (928)
T ss_pred CCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCC-CCcEEEEEECCCEEEEeecCCCccccccCC
Confidence 88877776653 458888874332 3333333445565666665 444466677899988766654322 23343
Q ss_pred cccCCeEEEEEeCCC--CEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEE-EEeCCeEE
Q 001352 885 GHSKRVTGLVFSDAL--NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL-LVHETHLA 961 (1093)
Q Consensus 885 ~h~~~V~~l~~s~dg--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~-~~~d~~i~ 961 (1093)
.-...+..+.+.... ..++.-+..|.+.+ ++ . .+. ..++++++ .+.+|+ +.....++
T Consensus 575 ~~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~---n~-~-----~la---------~~~tSF~v--~~~~Ll~TT~~h~l~ 634 (928)
T PF04762_consen 575 QPCPWMEVCQINGSEDKRVLFGLSSNGRLYA---NS-R-----LLA---------SNCTSFAV--TDSFLLFTTTQHTLK 634 (928)
T ss_pred CCCcEEEEEEECCccceeEEEEECCCCEEEE---CC-E-----EEe---------cCCceEEE--EcCEEEEEecCceEE
Confidence 322223223332222 14444444554442 21 1 111 13566666 344444 46777888
Q ss_pred EEEcCC-cceeeeeecC----CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceE
Q 001352 962 IYEAEE-LTCLKQWFPI----SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1014 (1093)
Q Consensus 962 vwd~~~-~~~~~~~~~~----h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~ 1014 (1093)
..++.. ...+...... +...+..+ .-|..||++-....=.|..++-|.+.
T Consensus 635 fv~L~~~~~~l~~~~~~~~~~~de~~R~V---ERGsriVt~vp~~~~vVLQmPRGNLE 689 (928)
T PF04762_consen 635 FVHLNSSVEDLEIPPDSPENSYDERCRRV---ERGSRIVTAVPSDTSVVLQMPRGNLE 689 (928)
T ss_pred EEECcCchhhcccccCccccccccccccC---ccCCEEEEEeCCCceEEEEcCCCchh
Confidence 888871 1111111111 11123322 46888888876666677888888775
No 225
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=1.2e-12 Score=130.16 Aligned_cols=260 Identities=12% Similarity=0.112 Sum_probs=163.9
Q ss_pred ccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccC
Q 001352 735 ANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 814 (1093)
Q Consensus 735 ~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 814 (1093)
...|++++|-|.+..-++.+-.+.|.+|..+.... ....++ ..+..+.... .+.+| .+|+++.+.+|
T Consensus 140 QrnvtclawRPlsaselavgCr~gIciW~~s~tln-------~~r~~~---~~s~~~~qvl--~~pgh-~pVtsmqwn~d 206 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLN-------ANRNIR---MMSTHHLQVL--QDPGH-NPVTSMQWNED 206 (445)
T ss_pred hcceeEEEeccCCcceeeeeecceeEEEEcCcccc-------cccccc---cccccchhhe--eCCCC-ceeeEEEEcCC
Confidence 34678888888777667777777888998654321 000011 1111112222 22235 89999999999
Q ss_pred CCEEEEEe--CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEE
Q 001352 815 DAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG 892 (1093)
Q Consensus 815 g~~la~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~ 892 (1093)
|..+++++ +..|.|||..++..+.-.....+.++-+.||| |+.+|.+++-|+..++|+.....-..+..--++.|+.
T Consensus 207 gt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqt 285 (445)
T KOG2139|consen 207 GTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQT 285 (445)
T ss_pred CCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceecceeccCCceee
Confidence 99999998 57899999999887665545667889999999 8999999999999999965543222222224458999
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEeCCCCcee----------eeeee------ecCCCcccCCCCceEEEEccCCCEEEEEe
Q 001352 893 LVFSDALNILVSSGGDAQIFVWDVDGWGIQ----------TCRSL------QTPDGVMTLAPSETHIQFHKDQTRFLLVH 956 (1093)
Q Consensus 893 l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~----------~~~~~------~~~~~~~~~~~~v~~~~~s~dg~~l~~~~ 956 (1093)
.+|+|+|++|+.+.. |.=++|.+.-.+.. ....+ ....+.....+.+.+++|.|.|.+||+..
T Consensus 286 acWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~f 364 (445)
T KOG2139|consen 286 ACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIF 364 (445)
T ss_pred eeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEE
Confidence 999999998765543 22345554321100 00011 11111111125789999999999999953
Q ss_pred CC---------eEEEEEcCCcceeeeeecCC--CCCEEEEEEcc---CCCEEEEEeCCCcEEEEEcC
Q 001352 957 ET---------HLAIYEAEELTCLKQWFPIS--SVPISQATFSC---DCRMVFTSFVDGTLSIHEAS 1009 (1093)
Q Consensus 957 d~---------~i~vwd~~~~~~~~~~~~~h--~~~v~~~~fs~---dg~~l~t~~~dg~v~vwd~~ 1009 (1093)
.+ .|.+||....-.+...+.+- ......+.|+| +|.+|..+=..|.+.-|++.
T Consensus 365 Kg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 365 KGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred cCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 22 36677766544433322221 22345567766 66777777667777766654
No 226
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=4.5e-15 Score=162.49 Aligned_cols=339 Identities=18% Similarity=0.190 Sum_probs=218.5
Q ss_pred HHHHHHHHhHHhhhhcCCCCCCCCCCCCcceecccCCCCCCCcCCCCCCCCCCCCCCCCCCcccccC----CcccCcccc
Q 001352 171 RLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSS----SMLTDSAVS 246 (1093)
Q Consensus 171 rL~~ll~qa~~~q~~~c~~~~~~~~~~sl~~d~~c~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~----~~~~~~~~~ 246 (1093)
-|..|+-|.++.|+.+|+.|.++.+++|||..|.|++ |-+..+++-++.... .++.+.++.
T Consensus 1014 sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPE---------------pk~~~~ap~N~t~Rl~~rel~~~y~gV~ 1078 (1516)
T KOG1832|consen 1014 SLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPE---------------PKRLLEAPLNMTGRLGTRELQSFYSGVH 1078 (1516)
T ss_pred cHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCC---------------hHHHhhcchhhhhcccchhhcCcccccc
Confidence 4999999999999999999999999999999999997 333332221111000 000000000
Q ss_pred cccccCCCCCcccccccCCCCCCCcccCCCcccccccCCCcceecCcCCCCcCCCCCCcccccccccccCCCccCCchHH
Q 001352 247 FVALSLSDPTNKVAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKT 326 (1093)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~fsP~~s~~~~~~~~~~~~~~~~~p~~ 326 (1093)
+ -++.. -.+|| . .+
T Consensus 1079 g----------------------------------------~~~dr-----~~IFS-----------R----------Fr 1092 (1516)
T KOG1832|consen 1079 G----------------------------------------NRRDR-----QFIFS-----------R----------FR 1092 (1516)
T ss_pred c----------------------------------------Ccccc-----hhhHh-----------h----------cc
Confidence 0 00000 11221 0 12
Q ss_pred HHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEEC
Q 001352 327 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 406 (1093)
Q Consensus 327 ~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 406 (1093)
..++++.|+..-+|++||-+.+. |++|+..|.|+++++.+|..... ...|+.+|+.+.=|
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~h-L~vG~~~Geik~~nv~sG~~e~s-------------------~ncH~SavT~vePs 1152 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNH-LAVGSHAGEIKIFNVSSGSMEES-------------------VNCHQSAVTLVEPS 1152 (1516)
T ss_pred cchhhhccccceeeEEeecCCce-EEeeeccceEEEEEccCcccccc-------------------cccccccccccccc
Confidence 23567789999999999999984 99999999999999999988765 56799999999999
Q ss_pred CCCCEEEEEEcC--CEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEe-e
Q 001352 407 PDGSLLGVAYSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-E 483 (1093)
Q Consensus 407 ~dg~~las~~~d--~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-~ 483 (1093)
.||..+.+.+.- ....+|++.+- ....+++. .-.++.|+....+ .+ .|..-..+.+||++|+..+.++ .
T Consensus 1153 ~dgs~~Ltsss~S~PlsaLW~~~s~--~~~~Hsf~----ed~~vkFsn~~q~-r~-~gt~~d~a~~YDvqT~~~l~tylt 1224 (1516)
T KOG1832|consen 1153 VDGSTQLTSSSSSSPLSALWDASST--GGPRHSFD----EDKAVKFSNSLQF-RA-LGTEADDALLYDVQTCSPLQTYLT 1224 (1516)
T ss_pred CCcceeeeeccccCchHHHhccccc--cCcccccc----ccceeehhhhHHH-HH-hcccccceEEEecccCcHHHHhcC
Confidence 999887766433 35789998762 22222333 2457889887553 33 3333456899999999888763 2
Q ss_pred c---CCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001352 484 G---HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 560 (1093)
Q Consensus 484 ~---h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~i 560 (1093)
+ ....-+...|+|.. .+++ .|| .+||.+..+.+..+.... ....-.|+|.|..++..+ .|
T Consensus 1225 ~~~~~~y~~n~a~FsP~D--~LIl---ndG--vLWDvR~~~aIh~FD~ft-~~~~G~FHP~g~eVIINS---------EI 1287 (1516)
T KOG1832|consen 1225 DTVTSSYSNNLAHFSPCD--TLIL---NDG--VLWDVRIPEAIHRFDQFT-DYGGGGFHPSGNEVIINS---------EI 1287 (1516)
T ss_pred cchhhhhhccccccCCCc--ceEe---eCc--eeeeeccHHHHhhhhhhe-ecccccccCCCceEEeec---------hh
Confidence 2 22222455565543 3443 344 469998887666554433 122345999999998864 58
Q ss_pred EeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEe--CC---------------CcEEEEECCCCceEEEEecCCCC
Q 001352 561 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--DD---------------HVIKIWDMNKVQLLTTIDAGGGL 623 (1093)
Q Consensus 561 wd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~--~d---------------g~i~iwd~~~~~~~~~~~~~~~~ 623 (1093)
||+++.+.++...... -..+.|+..|..++..- .| ...+-+|...-..+.+++...
T Consensus 1288 wD~RTF~lLh~VP~Ld-----qc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R-- 1360 (1516)
T KOG1832|consen 1288 WDMRTFKLLHSVPSLD-----QCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDR-- 1360 (1516)
T ss_pred hhhHHHHHHhcCcccc-----ceEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeeccc--
Confidence 9999998887766544 46778888887665432 00 123445555555566665442
Q ss_pred CCCceEEEecCCCEEEEEEC
Q 001352 624 PENPRICFNKNGTLLAVIAN 643 (1093)
Q Consensus 624 ~~v~~v~~s~~~~~l~~~~~ 643 (1093)
.+..+|-+|...++++...
T Consensus 1361 -~~~Dlct~~~D~~l~vIe~ 1379 (1516)
T KOG1832|consen 1361 -CLLDLCTEPTDSFLGVIEM 1379 (1516)
T ss_pred -chhhhhcCCccceEEEEec
Confidence 2556666776666665543
No 227
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.57 E-value=1.5e-14 Score=148.01 Aligned_cols=273 Identities=18% Similarity=0.185 Sum_probs=213.4
Q ss_pred CceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEE
Q 001352 337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 416 (1093)
Q Consensus 337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~ 416 (1093)
....+.|+.+|++ ++.|+.-|.|-.+|+.++++..+.++ ...|..+.|-.+.+++|++
T Consensus 131 GPY~~~ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei~v--------------------~Etv~Dv~~LHneq~~AVA- 188 (545)
T KOG1272|consen 131 GPYHLDYTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEINV--------------------METVRDVTFLHNEQFFAVA- 188 (545)
T ss_pred CCeeeeecCCccE-EEecCCccceeeeecccceeeeeeeh--------------------hhhhhhhhhhcchHHHHhh-
Confidence 6788999999997 66677889999999999998876442 3678899999999999998
Q ss_pred cCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecc
Q 001352 417 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 496 (1093)
Q Consensus 417 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~ 496 (1093)
....++|||-..-+ +. .++.| .+|..+.|.|--- +|++++..|.++--|+.+|+.+..+....+.+..++-+|
T Consensus 189 QK~y~yvYD~~GtE-lH---Clk~~-~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP 261 (545)
T KOG1272|consen 189 QKKYVYVYDNNGTE-LH---CLKRH-IRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP 261 (545)
T ss_pred hhceEEEecCCCcE-Ee---ehhhc-Cchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC
Confidence 45569999976532 32 34444 4689999999765 899999999999999999999999988888888888766
Q ss_pred cCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeeccc
Q 001352 497 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 576 (1093)
Q Consensus 497 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 576 (1093)
.+ ..+-+|...|+|.+|.....+....+..|.++|.++++.++|+++++.+. |..+.|||++.-..+.++.. .
T Consensus 262 ~N--aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~----Dr~~kIWDlR~~~ql~t~~t-p 334 (545)
T KOG1272|consen 262 YN--AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL----DRKVKIWDLRNFYQLHTYRT-P 334 (545)
T ss_pred cc--ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc----ccceeEeeeccccccceeec-C
Confidence 54 57889999999999999999999999999999999999999999999987 66799999998876666655 2
Q ss_pred ccCCCeEEEEEcCCCCEEEEEeCCCcEEEEE-CCCCc--eEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEE
Q 001352 577 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWD-MNKVQ--LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 650 (1093)
Q Consensus 577 ~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd-~~~~~--~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 650 (1093)
.+...+++|..| +++.+....|.||. .-.+. .-...-.|.....|..+.|.|-...|-+|...|--.+.
T Consensus 335 ---~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsil 406 (545)
T KOG1272|consen 335 ---HPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSIL 406 (545)
T ss_pred ---CCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEe
Confidence 457778888655 55666666799994 22211 11111112222468899999988888887776654444
No 228
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.56 E-value=1.1e-12 Score=128.42 Aligned_cols=243 Identities=11% Similarity=0.058 Sum_probs=169.9
Q ss_pred CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe---eeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 001352 529 PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA---IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI 605 (1093)
Q Consensus 529 ~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~---~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~i 605 (1093)
...+|++.+|++|+..++++..+ ..|.||...... ..+++..|. ..|+.+.|+|..+.|++++.|..-++
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~----~evhiy~~~~~~~w~~~htls~Hd---~~vtgvdWap~snrIvtcs~drnayV 81 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNN----HEVHIYSMLGADLWEPAHTLSEHD---KIVTGVDWAPKSNRIVTCSHDRNAYV 81 (361)
T ss_pred ccCceeeeeecCCCceEEeccCC----ceEEEEEecCCCCceeceehhhhC---cceeEEeecCCCCceeEccCCCCccc
Confidence 44689999999999999998763 347777766544 556666666 89999999999999999999999999
Q ss_pred EEC-CCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeec
Q 001352 606 WDM-NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGI 684 (1093)
Q Consensus 606 wd~-~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 684 (1093)
|.. ..++...++..-.......++.|+|.++.+|+|+....|.||-.+........+...
T Consensus 82 w~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhik------------------- 142 (361)
T KOG1523|consen 82 WTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIK------------------- 142 (361)
T ss_pred cccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhC-------------------
Confidence 998 556555444433334568999999999999999999999998776543221111000
Q ss_pred cCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeee
Q 001352 685 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 764 (1093)
Q Consensus 685 ~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~ 764 (1093)
....+.|.++.|.|++-.+++++.|+..+++..
T Consensus 143 -----------------------------------------------kPirStv~sldWhpnnVLlaaGs~D~k~rVfSa 175 (361)
T KOG1523|consen 143 -----------------------------------------------KPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSA 175 (361)
T ss_pred -----------------------------------------------CccccceeeeeccCCcceecccccCcceeEEEE
Confidence 114567888899999998889999998888875
Q ss_pred cCcccCcCcccccccCCcccCCCC--CCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCce-eEEEE
Q 001352 765 PRNDLTLSTEATTKVPPRLYQPRH--GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFK-TILTI 840 (1093)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~-~~~~~ 840 (1093)
--... .......-|..+. |..+.... ...+.+..+.|+|+|..|+..+ |+.+.+-|..... .+...
T Consensus 176 yIK~V------dekpap~pWgsk~PFG~lm~E~~----~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~ 245 (361)
T KOG1523|consen 176 YIKGV------DEKPAPTPWGSKMPFGQLMSEAS----SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSV 245 (361)
T ss_pred eeecc------ccCCCCCCCccCCcHHHHHHhhc----cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccch
Confidence 32211 1111233444332 22222221 2578899999999999999887 7999998877654 33333
Q ss_pred CCCCCCeEEEEEcC
Q 001352 841 MPPSPTATSLAFNP 854 (1093)
Q Consensus 841 ~~~~~~i~~l~~s~ 854 (1093)
....-+..++.|-.
T Consensus 246 ~~~~lP~ls~~~is 259 (361)
T KOG1523|consen 246 ATAQLPLLSVSWIS 259 (361)
T ss_pred hhccCCceeeEeec
Confidence 33335566666654
No 229
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=1.7e-12 Score=146.93 Aligned_cols=237 Identities=11% Similarity=0.115 Sum_probs=156.6
Q ss_pred cEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEc---CCEEEEEEccCCCcccce
Q 001352 359 DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQQ 435 (1093)
Q Consensus 359 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~---d~~i~iwd~~~~~~~~~~ 435 (1093)
.|.+||...+.... +..+...+.+.+|||||+.||..+. +..|.+|++.+|+.. .
T Consensus 180 ~l~~~d~dg~~~~~--------------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-~- 237 (429)
T PRK03629 180 ELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-Q- 237 (429)
T ss_pred eEEEEcCCCCCCEE--------------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-E-
Confidence 68888887665432 3346778999999999999997643 457999999887532 2
Q ss_pred EEeccccccEEEEEeeCCCCcEEEEEEcCCC--cEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecC-CeE
Q 001352 436 LEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GKI 512 (1093)
Q Consensus 436 ~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-g~i 512 (1093)
+....+.+..++|+|||+. ++++.+.++ .|.+||+.+++..+ +..+...+....|+ +||+.|+..+.+ |..
T Consensus 238 --l~~~~~~~~~~~~SPDG~~-La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wS--PDG~~I~f~s~~~g~~ 311 (429)
T PRK03629 238 --VASFPRHNGAPAFSPDGSK-LAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWF--PDSQNLAYTSDQAGRP 311 (429)
T ss_pred --ccCCCCCcCCeEECCCCCE-EEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEEC--CCCCEEEEEeCCCCCc
Confidence 2223333557899999995 233334444 58999998887654 33344556667774 567777766654 455
Q ss_pred EEE--EcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCC
Q 001352 513 KAW--LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA 590 (1093)
Q Consensus 513 ~vw--d~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~ 590 (1093)
.+| |+..+.. ..+...........|+|||++++..+... +...|++||+.+++... +... .......|+||
T Consensus 312 ~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~-g~~~I~~~dl~~g~~~~-Lt~~----~~~~~p~~SpD 384 (429)
T PRK03629 312 QVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNG-GQQHIAKQDLATGGVQV-LTDT----FLDETPSIAPN 384 (429)
T ss_pred eEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccC-CCceEEEEECCCCCeEE-eCCC----CCCCCceECCC
Confidence 555 5554433 33333344556789999999998876432 35679999998886543 3221 12345789999
Q ss_pred CCEEEEEeCCCc---EEEEECCCCceEEEEecCCCCCCCceEEEec
Q 001352 591 KDQILAAGDDHV---IKIWDMNKVQLLTTIDAGGGLPENPRICFNK 633 (1093)
Q Consensus 591 ~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 633 (1093)
|+.++.++.++. +.++++ +|.....+..+. ..+...+|+|
T Consensus 385 G~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~--~~~~~p~Wsp 427 (429)
T PRK03629 385 GTMVIYSSSQGMGSVLNLVST-DGRFKARLPATD--GQVKFPAWSP 427 (429)
T ss_pred CCEEEEEEcCCCceEEEEEEC-CCCCeEECccCC--CCcCCcccCC
Confidence 999999887764 677777 455555555432 3467788876
No 230
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.56 E-value=2.3e-14 Score=146.76 Aligned_cols=270 Identities=16% Similarity=0.170 Sum_probs=213.3
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCC
Q 001352 397 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 476 (1093)
Q Consensus 397 ~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~ 476 (1093)
......+.++.+|++|+.|+..|.|..+|+.++.... ++. -...|.++.|..+.+ +++ ......+.||| ..|
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~---Ei~-v~Etv~Dv~~LHneq--~~A-VAQK~y~yvYD-~~G 200 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHF---EIN-VMETVRDVTFLHNEQ--FFA-VAQKKYVYVYD-NNG 200 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeee---eee-hhhhhhhhhhhcchH--HHH-hhhhceEEEec-CCC
Confidence 4567789999999999999999999999999987554 232 345689999998877 444 45577899999 889
Q ss_pred ceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCce
Q 001352 477 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 556 (1093)
Q Consensus 477 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~ 556 (1093)
..++.++.| ..|..+.|.|.. -+|++++..|.++.-|+.+++.+..+....+.+..++-+|-+..+-.|.. .|
T Consensus 201 tElHClk~~-~~v~rLeFLPyH--fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs----nG 273 (545)
T KOG1272|consen 201 TELHCLKRH-IRVARLEFLPYH--FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS----NG 273 (545)
T ss_pred cEEeehhhc-Cchhhhcccchh--heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC----Cc
Confidence 999999855 457778886643 57888999999999999999999888888889999999998888877765 77
Q ss_pred eEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCC
Q 001352 557 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT 636 (1093)
Q Consensus 557 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 636 (1093)
+|.+|...+.+++..+..|. ++|.++++.++|.++++++.|..++|||++....+.++... -....+++|..|
T Consensus 274 tVSlWSP~skePLvKiLcH~---g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp---~~a~~ls~Sqkg- 346 (545)
T KOG1272|consen 274 TVSLWSPNSKEPLVKILCHR---GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTP---HPASNLSLSQKG- 346 (545)
T ss_pred eEEecCCCCcchHHHHHhcC---CCcceEEECCCCcEEeecccccceeEeeeccccccceeecC---CCcccccccccc-
Confidence 89999999999999999988 99999999999999999999999999999988877666542 235778888766
Q ss_pred EEEEEECCCeEEEEEcCCC-----ceeeecccccccceeeeecCCCceeeeeccCCce
Q 001352 637 LLAVIANENRIKILETPES-----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV 689 (1093)
Q Consensus 637 ~l~~~~~dg~i~iw~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 689 (1093)
+||.+ ....+.||.-... ....-...-...|..+.|+|....+++|-..|-.
T Consensus 347 lLA~~-~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~t 403 (545)
T KOG1272|consen 347 LLALS-YGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGIT 403 (545)
T ss_pred ceeee-cCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCce
Confidence 34443 3457899963321 1111111223378899999999998887766633
No 231
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.56 E-value=1.7e-12 Score=127.21 Aligned_cols=239 Identities=12% Similarity=0.160 Sum_probs=167.0
Q ss_pred CCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEEECCCCC--CeEEEEEcCCCCCEEE-EEeCC------CeEEEEEc
Q 001352 804 EAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSP--TATSLAFNPHDNNVIA-IGMDD------STILIYNA 874 (1093)
Q Consensus 804 ~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~--~i~~l~~s~~d~~~la-sg~~d------g~i~iwd~ 874 (1093)
....+++|..|...++++.+...+||+.+-.+.......+.. .+..+-|- .++|| +|+.+ ..|.|||=
T Consensus 6 ~~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR---~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 6 PKTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFR---SNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred CceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhh---hceEEEecCCCCCCCCCceEEEEec
Confidence 345569999999999999998999999876444332222222 33333443 23444 34433 48999996
Q ss_pred CCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccC--CCEE
Q 001352 875 RSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD--QTRF 952 (1093)
Q Consensus 875 ~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--g~~l 952 (1093)
...+++..+. ...+|.++.+++| .+++.- .+.|.||.....-.. ...+.+..... + -++..|. -.+|
T Consensus 83 ~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~-l~~~et~~NPk----G--lC~~~~~~~k~~L 151 (346)
T KOG2111|consen 83 LKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKL-LHVIETRSNPK----G--LCSLCPTSNKSLL 151 (346)
T ss_pred ccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhh-eeeeecccCCC----c--eEeecCCCCceEE
Confidence 6677777776 6788999999876 455543 566999999853211 11222221111 1 2334443 3344
Q ss_pred EE-E-eCCeEEEEEcCCcce-eeeeecCCCCCEEEEEEccCCCEEEEEeCCCc-EEEEEcCCCceEEEeccccccCCCCC
Q 001352 953 LL-V-HETHLAIYEAEELTC-LKQWFPISSVPISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTS 1028 (1093)
Q Consensus 953 ~~-~-~d~~i~vwd~~~~~~-~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~-v~vwd~~~~~~~~~~~~~~~~~~~~~ 1028 (1093)
|. | .-|.|+|-|+...+. ......+|...|.+++.+-+|.++||+|..|+ |||||..+|..+..++....
T Consensus 152 afPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d------ 225 (346)
T KOG2111|consen 152 AFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVD------ 225 (346)
T ss_pred EcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCc------
Confidence 44 4 458999999987665 33457789999999999999999999999998 89999999999999873321
Q ss_pred CCccceeEEEeCCCCCCEEEEEeCCCcEEEEecCCCC
Q 001352 1029 CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1065 (1093)
Q Consensus 1029 ~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~ 1065 (1093)
...| .|++||| +..+||++++-|+|++|.+.+..
T Consensus 226 ~A~i--y~iaFSp-~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 226 RADI--YCIAFSP-NSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred hheE--EEEEeCC-CccEEEEEcCCCeEEEEEeecCC
Confidence 1224 4889999 58999999999999999997654
No 232
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=2.3e-12 Score=147.13 Aligned_cols=237 Identities=13% Similarity=0.060 Sum_probs=161.1
Q ss_pred CcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEc---CCEEEEEEccCCCcccc
Q 001352 358 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQ 434 (1093)
Q Consensus 358 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~---d~~i~iwd~~~~~~~~~ 434 (1093)
..|.+||..++.... +..|...+.+.+|||||+.|+..+. +..|.+||+.+++..
T Consensus 182 ~~l~~~d~dg~~~~~--------------------lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-- 239 (435)
T PRK05137 182 KRLAIMDQDGANVRY--------------------LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-- 239 (435)
T ss_pred eEEEEECCCCCCcEE--------------------EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE--
Confidence 378888886554332 5568889999999999999998864 468999999987532
Q ss_pred eEEeccccccEEEEEeeCCCCcEEEEEEcCCCc--EEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEec-CC-
Q 001352 435 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT--IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG- 510 (1093)
Q Consensus 435 ~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~--i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg- 510 (1093)
.+..+.+.+...+|+|||+. ++++.+.++. |.+||+.+++. ..+..+........|+ +||+.|+..+. +|
T Consensus 240 --~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~s--pDG~~i~f~s~~~g~ 313 (435)
T PRK05137 240 --LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYS--PDGSQIVFESDRSGS 313 (435)
T ss_pred --EeecCCCcccCcEECCCCCE-EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEc--CCCCEEEEEECCCCC
Confidence 34456677889999999995 3456666655 77779888765 4455566556666774 56777776653 33
Q ss_pred -eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcC
Q 001352 511 -KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 589 (1093)
Q Consensus 511 -~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~ 589 (1093)
.|.++|+....... +......+....|+|||+.++...... +...|.+||+.++.. +.+.. . ..+....|+|
T Consensus 314 ~~Iy~~d~~g~~~~~-lt~~~~~~~~~~~SpdG~~ia~~~~~~-~~~~i~~~d~~~~~~-~~lt~-~---~~~~~p~~sp 386 (435)
T PRK05137 314 PQLYVMNADGSNPRR-ISFGGGRYSTPVWSPRGDLIAFTKQGG-GQFSIGVMKPDGSGE-RILTS-G---FLVEGPTWAP 386 (435)
T ss_pred CeEEEEECCCCCeEE-eecCCCcccCeEECCCCCEEEEEEcCC-CceEEEEEECCCCce-EeccC-C---CCCCCCeECC
Confidence 57777876554433 333344566788999999999876432 356799999866543 33322 1 2456789999
Q ss_pred CCCEEEEEeCC------CcEEEEECCCCceEEEEecCCCCCCCceEEEec
Q 001352 590 AKDQILAAGDD------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 633 (1093)
Q Consensus 590 ~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 633 (1093)
||+.|+..+.+ ..++++|+.++.. ..+... ..+...+|+|
T Consensus 387 DG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~---~~~~~p~Wsp 432 (435)
T PRK05137 387 NGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTP---GDASDPAWSP 432 (435)
T ss_pred CCCEEEEEEccCCCCCcceEEEEECCCCce-EEccCC---CCccCcccCC
Confidence 99998775532 3588888876554 344322 1356667776
No 233
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=3e-12 Score=145.91 Aligned_cols=238 Identities=16% Similarity=0.120 Sum_probs=157.5
Q ss_pred CcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEc---CCEEEEEEccCCCcccc
Q 001352 358 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQ 434 (1093)
Q Consensus 358 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~---d~~i~iwd~~~~~~~~~ 434 (1093)
..|.+||...+.... +..|...+.+.+|||||+.|+.++. +..|.+||+.+++..
T Consensus 184 ~~l~i~D~~g~~~~~--------------------lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-- 241 (433)
T PRK04922 184 YALQVADSDGYNPQT--------------------ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-- 241 (433)
T ss_pred EEEEEECCCCCCceE--------------------eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE--
Confidence 468899986554322 4457788999999999999998864 346999999887632
Q ss_pred eEEeccccccEEEEEeeCCCCcEEEEEEcCCC--cEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEec-CCe
Q 001352 435 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGK 511 (1093)
Q Consensus 435 ~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~ 511 (1093)
.+..+.+...+++|+|||+. ++++.+.++ .|.+||+.+++.. .+..+.......+|+ +||+.|+..+. +|.
T Consensus 242 --~l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~s--pDG~~l~f~sd~~g~ 315 (433)
T PRK04922 242 --LVASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWA--PDGKSIYFTSDRGGR 315 (433)
T ss_pred --EeccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEEC--CCCCEEEEEECCCCC
Confidence 23344445568899999995 334555555 5999999888753 455555555666774 56777776654 455
Q ss_pred --EEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcC
Q 001352 512 --IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 589 (1093)
Q Consensus 512 --i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~ 589 (1093)
|.++++.+++... +..........+|+|||++++..... ++...|.+||+.+++......+ .......|+|
T Consensus 316 ~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~~~~-~~~~~I~v~d~~~g~~~~Lt~~-----~~~~~p~~sp 388 (433)
T PRK04922 316 PQIYRVAASGGSAER-LTFQGNYNARASVSPDGKKIAMVHGS-GGQYRIAVMDLSTGSVRTLTPG-----SLDESPSFAP 388 (433)
T ss_pred ceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEEECC-CCceeEEEEECCCCCeEECCCC-----CCCCCceECC
Confidence 5556665544332 22233344568999999999887642 2355799999988876533222 1234568999
Q ss_pred CCCEEEEEeC---CCcEEEEECCCCceEEEEecCCCCCCCceEEEec
Q 001352 590 AKDQILAAGD---DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 633 (1093)
Q Consensus 590 ~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 633 (1093)
||++++..+. .+.|+++++.. .....+..+. ..+...+|+|
T Consensus 389 dG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~--g~~~~p~wsp 432 (433)
T PRK04922 389 NGSMVLYATREGGRGVLAAVSTDG-RVRQRLVSAD--GEVREPAWSP 432 (433)
T ss_pred CCCEEEEEEecCCceEEEEEECCC-CceEEcccCC--CCCCCCccCC
Confidence 9999887664 34688888854 4444444322 2356677776
No 234
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.51 E-value=1.4e-09 Score=112.22 Aligned_cols=522 Identities=14% Similarity=0.126 Sum_probs=274.4
Q ss_pred HhhccCCCCceeeeecCCCceEEEE----Ec--cCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEE
Q 001352 329 QTLIEGSSSPMSMDFHPVQHTLLLV----GT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 402 (1093)
Q Consensus 329 ~~l~~h~~~V~~~~~spdg~~llas----g~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 402 (1093)
+.+..|-+-|+...|+|||+.++.+ |+ ..+.+.+.+.+.|+..+..- + | ..-+.
T Consensus 72 ~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRiTy-----------------f-G--r~fT~ 131 (668)
T COG4946 72 LRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRITY-----------------F-G--RRFTR 131 (668)
T ss_pred eEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEEEE-----------------e-c--cccce
Confidence 4556677789999999999974442 22 23558888888888765311 1 2 33333
Q ss_pred -EEECCCCCEEEEEEcCCE----EEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCC-----------C
Q 001352 403 -VVWSPDGSLLGVAYSKHI----VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----------K 466 (1093)
Q Consensus 403 -v~~s~dg~~las~~~d~~----i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d-----------~ 466 (1093)
.-|+|||+.|++...-.- -.+|.++....-.. . -.-++.+.+.+- ||. ++.|-.- |
T Consensus 132 VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e--~--LnlGpathiv~~-dg~---ivigRntydLP~WK~YkGG 203 (668)
T COG4946 132 VAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTE--P--LNLGPATHIVIK-DGI---IVIGRNTYDLPHWKGYKGG 203 (668)
T ss_pred eeccCCCCCEEEEeccCCCcccceeeeEEccCCceee--e--ccCCceeeEEEe-CCE---EEEccCcccCcccccccCC
Confidence 459999999988744321 23444433211000 1 123445555543 332 3333211 0
Q ss_pred -cEEEEECC-CCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCE
Q 001352 467 -TIKVWDAV-TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 544 (1093)
Q Consensus 467 -~i~vwd~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~ 544 (1093)
.=++|--. .|+....+-.-.+.|.+-.+. .++.-+....+|.=.+|..+-...-..-...-....+=..+.||+.
T Consensus 204 trGklWis~d~g~tFeK~vdl~~~vS~PmIV---~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtdYY~R~~nsDGkr 280 (668)
T COG4946 204 TRGKLWISSDGGKTFEKFVDLDGNVSSPMIV---GERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTDYYPRNANSDGKR 280 (668)
T ss_pred ccceEEEEecCCcceeeeeecCCCcCCceEE---cceEEEEecccCccceEEeccCCchhhhcCCchhccccccCCCCcE
Confidence 12455332 232322222222222221110 1122223344444444433221111110011112233345679999
Q ss_pred EEEEecCCCCceeEEEEeCCCCeeeeeeeccccc---C-----CCeEEEE-EcC-CCCEEEEEeCCCcEEEEECCCCceE
Q 001352 545 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ---H-----NSVSVVH-FDT-AKDQILAAGDDHVIKIWDMNKVQLL 614 (1093)
Q Consensus 545 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~---~-----~~v~~v~-~~~-~~~~l~~~~~dg~i~iwd~~~~~~~ 614 (1093)
++... .+.|++||..+..+.+.--+.... . .+..-+. |++ +|.+++..|. |...|.+...+-.+
T Consensus 281 IvFq~-----~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~~i 354 (668)
T COG4946 281 IVFQN-----AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGYSI 354 (668)
T ss_pred EEEec-----CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCeeE
Confidence 88754 334999999876654332221100 0 0111111 222 4666666664 66677666555444
Q ss_pred EEEecCCCCCCCceEEEecCCCEEEEEECCC-eEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecC
Q 001352 615 TTIDAGGGLPENPRICFNKNGTLLAVIANEN-RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE 693 (1093)
Q Consensus 615 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1093)
+.-. ...|.-..+.-+++-++.|..|| .+-|++..++..-...
T Consensus 355 qv~~----~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e-------------------------------- 398 (668)
T COG4946 355 QVGK----KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIE-------------------------------- 398 (668)
T ss_pred EcCC----CCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEee--------------------------------
Confidence 3321 23466677777777888999988 8889988766322111
Q ss_pred CCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCc
Q 001352 694 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST 773 (1093)
Q Consensus 694 ~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~ 773 (1093)
..-+.|.++..+++|+.++++.....+.+.|++....
T Consensus 399 ---------------------------------------~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv---- 435 (668)
T COG4946 399 ---------------------------------------KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV---- 435 (668)
T ss_pred ---------------------------------------CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe----
Confidence 1335688899999999888887777777766654321
Q ss_pred ccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-C----CeEEEEEccCceeEEEECCCCCCeE
Q 001352 774 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-G----GVISLYIVMTFKTILTIMPPSPTAT 848 (1093)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-d----g~i~iwd~~~~~~~~~~~~~~~~i~ 848 (1093)
.+.- .....-|+.++|+|+++++|.+- + ..|+++|+.+++....-. ....-.
T Consensus 436 ------------------~~id----kS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~Df 492 (668)
T COG4946 436 ------------------RLID----KSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDF 492 (668)
T ss_pred ------------------eEec----ccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-Cccccc
Confidence 1111 12567789999999999999986 3 459999999887765443 444556
Q ss_pred EEEEcCCCCCEEEEEeCCCeEEEEEcCCcceee--ecccccCCeEEE----EEeCCCCEEEE-EeCCCcEEEEeCCCCce
Q 001352 849 SLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS--KLEGHSKRVTGL----VFSDALNILVS-SGGDAQIFVWDVDGWGI 921 (1093)
Q Consensus 849 ~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~--~l~~h~~~V~~l----~~s~dg~~l~s-~s~dg~i~iwd~~~~~~ 921 (1093)
+-+|.| |+++|.--+... .|..+.+.+- .+..|+.+-..+ ..||-.+..-. -+.++.+-+=++...
T Consensus 493 sPaFD~-d~ryLYfLs~Rs----LdPs~Drv~fnf~f~~vskPylv~L~~g~~sP~~q~p~~~~~ea~e~dle~ie~r-- 565 (668)
T COG4946 493 SPAFDP-DGRYLYFLSARS----LDPSNDRVIFNFSFQRVSKPYLVVLGRGYYSPFNQPPDEANSEAGEVDLEGIEDR-- 565 (668)
T ss_pred CcccCC-CCcEEEEEeccc----cCCCCCeeEEEEEEeeeccceEEEecCCCCChhhcCchhcCccccceehhhhccc--
Confidence 778999 899887655321 1111111111 111122221111 01222222111 123333322222220
Q ss_pred eeeeeeecCCCcccCCCCceEEEEccCCCEEEE-------------E--eCCeEEEEEcCCcceeeeeecCCCCCEEEEE
Q 001352 922 QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-------------V--HETHLAIYEAEELTCLKQWFPISSVPISQAT 986 (1093)
Q Consensus 922 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-------------~--~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~ 986 (1093)
..++...++. -.+++=-.+|+.+.- + .-|.+.+||+++.+.-.. ...++++.
T Consensus 566 --~eP~pVee~d------Y~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG~l~~ydletkk~~e~-----k~nvss~r 632 (668)
T COG4946 566 --VEPFPVEEGD------YRSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKGRLEKYDLETKKVEEY-----KDNVSSFR 632 (668)
T ss_pred --ccccccCccc------eeEeeecCCCeEEEEEeeccchhhhhhcCCCccceEEEEecchhhHHHH-----hcccceEE
Confidence 0111111111 222333334433321 1 236788999887654321 34689999
Q ss_pred EccCCCEEEEEeCCCcEEEEEcCC
Q 001352 987 FSCDCRMVFTSFVDGTLSIHEASN 1010 (1093)
Q Consensus 987 fs~dg~~l~t~~~dg~v~vwd~~~ 1010 (1093)
.|+||+.++. -.||.+++++++.
T Consensus 633 lS~D~s~ilv-k~d~kl~~f~vek 655 (668)
T COG4946 633 LSSDGSKILV-KLDGKLRLFDVEK 655 (668)
T ss_pred EcCCCCEEEE-EeCCeEEEEeccc
Confidence 9999999988 6799999999976
No 235
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.50 E-value=3.4e-10 Score=124.57 Aligned_cols=208 Identities=13% Similarity=0.183 Sum_probs=135.4
Q ss_pred eeEEEEccCCCEEEEEe--CCeEEEEEccC-ceeEEE---EC----------CCCCCeEEEEEcCCCCCEEEEEeC-CCe
Q 001352 806 VPCFALSKNDAYLFSAS--GGVISLYIVMT-FKTILT---IM----------PPSPTATSLAFNPHDNNVIAIGMD-DST 868 (1093)
Q Consensus 806 v~~l~~s~dg~~la~~~--dg~i~iwd~~~-~~~~~~---~~----------~~~~~i~~l~~s~~d~~~lasg~~-dg~ 868 (1093)
...++++|++++|+++. +|.+.++++.. |..... +. .......++.|+| +++++++... ...
T Consensus 89 p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D~ 167 (345)
T PF10282_consen 89 PCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGADR 167 (345)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTTE
T ss_pred cEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCCE
Confidence 44678888888888886 58888888875 433222 11 1234678999999 8887777653 348
Q ss_pred EEEEEcCCcc--ee--eecc-cccCCeEEEEEeCCCCEEEEEe-CCCcEEEEeCC--CCceeeeeeeecCCCcccCCCCc
Q 001352 869 ILIYNARSSE--VI--SKLE-GHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVD--GWGIQTCRSLQTPDGVMTLAPSE 940 (1093)
Q Consensus 869 i~iwd~~~~~--~~--~~l~-~h~~~V~~l~~s~dg~~l~s~s-~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~v 940 (1093)
|.+|++.... +. ..+. ......+.++|+||++++.... .+++|.++++. .+.......+.............
T Consensus 168 v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 247 (345)
T PF10282_consen 168 VYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAP 247 (345)
T ss_dssp EEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSE
T ss_pred EEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCc
Confidence 9999997654 31 2222 2345578899999999886654 57889999998 55443433343332211111257
Q ss_pred eEEEEccCCCEEEEE--eCCeEEEEEcC--Ccce--eeeeecCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEEc--CCC
Q 001352 941 THIQFHKDQTRFLLV--HETHLAIYEAE--ELTC--LKQWFPISSVPISQATFSCDCRMVFTSF-VDGTLSIHEA--SNL 1011 (1093)
Q Consensus 941 ~~~~~s~dg~~l~~~--~d~~i~vwd~~--~~~~--~~~~~~~h~~~v~~~~fs~dg~~l~t~~-~dg~v~vwd~--~~~ 1011 (1093)
..++++|||++|.++ ..+.|.+|++. +|.. +..+. ........++|+|||++|+++. .++.|.+|++ .+|
T Consensus 248 ~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~-~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG 326 (345)
T PF10282_consen 248 AEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVP-TGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTG 326 (345)
T ss_dssp EEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEE-ESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred eeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEe-CCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCC
Confidence 889999999999996 45689999993 3433 22222 2244588999999999999887 4568999876 466
Q ss_pred ceEE
Q 001352 1012 EVQC 1015 (1093)
Q Consensus 1012 ~~~~ 1015 (1093)
.+..
T Consensus 327 ~l~~ 330 (345)
T PF10282_consen 327 KLTP 330 (345)
T ss_dssp EEEE
T ss_pred cEEE
Confidence 6543
No 236
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=1.8e-12 Score=146.64 Aligned_cols=225 Identities=14% Similarity=0.101 Sum_probs=148.5
Q ss_pred HhhccCCCCceeeeecCCCceEEEEEc--cCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEEC
Q 001352 329 QTLIEGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 406 (1093)
Q Consensus 329 ~~l~~h~~~V~~~~~spdg~~llasg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 406 (1093)
+.+..+.+.+...+|||||++++.+.. .+..|.+||+.+|+... +....+.+..++||
T Consensus 192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------l~~~~~~~~~~~~S 251 (429)
T PRK03629 192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VASFPRHNGAPAFS 251 (429)
T ss_pred EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ccCCCCCcCCeEEC
Confidence 445556678999999999997554432 24579999999886543 11223345568999
Q ss_pred CCCCEEEEE-EcCC--EEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcC-CCc--EEEEECCCCceeE
Q 001352 407 PDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKT--IKVWDAVTGSRTY 480 (1093)
Q Consensus 407 ~dg~~las~-~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~-d~~--i~vwd~~~~~~~~ 480 (1093)
|||++|+.. +.++ .|.+||+.+++.. .+..+...+...+|+|||+. |+..+. ++. |.++|+.+++. .
T Consensus 252 PDG~~La~~~~~~g~~~I~~~d~~tg~~~----~lt~~~~~~~~~~wSPDG~~--I~f~s~~~g~~~Iy~~d~~~g~~-~ 324 (429)
T PRK03629 252 PDGSKLAFALSKTGSLNLYVMDLASGQIR----QVTDGRSNNTEPTWFPDSQN--LAYTSDQAGRPQVYKVNINGGAP-Q 324 (429)
T ss_pred CCCCEEEEEEcCCCCcEEEEEECCCCCEE----EccCCCCCcCceEECCCCCE--EEEEeCCCCCceEEEEECCCCCe-E
Confidence 999999876 3344 5999999887532 34445556789999999994 544443 444 44557766654 3
Q ss_pred EeecCCCCeEEeeecccCCccEEEEEecC---CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCcee
Q 001352 481 SFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 557 (1093)
Q Consensus 481 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~ 557 (1093)
.+..+........| ++||++|+..+.+ ..|.+||+.++.... +.. ........|+|||+.++..+.++. ...
T Consensus 325 ~lt~~~~~~~~~~~--SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~-~~~~~~p~~SpDG~~i~~~s~~~~-~~~ 399 (429)
T PRK03629 325 RITWEGSQNQDADV--SSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTD-TFLDETPSIAPNGTMVIYSSSQGM-GSV 399 (429)
T ss_pred EeecCCCCccCEEE--CCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCC-CCCCCCceECCCCCEEEEEEcCCC-ceE
Confidence 44334444455666 4577777776543 358888988765433 222 223346789999999999886443 456
Q ss_pred EEEEeCCCCeeeeeeecccccCCCeEEEEEcC
Q 001352 558 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 589 (1093)
Q Consensus 558 i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~ 589 (1093)
++++++ +|...+.+.++. +.+...+|+|
T Consensus 400 l~~~~~-~G~~~~~l~~~~---~~~~~p~Wsp 427 (429)
T PRK03629 400 LNLVST-DGRFKARLPATD---GQVKFPAWSP 427 (429)
T ss_pred EEEEEC-CCCCeEECccCC---CCcCCcccCC
Confidence 888887 455556666655 6677788887
No 237
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=1.8e-10 Score=124.36 Aligned_cols=558 Identities=9% Similarity=0.074 Sum_probs=318.6
Q ss_pred CceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEE
Q 001352 337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 416 (1093)
Q Consensus 337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~ 416 (1093)
...|++|+....| +|+|+.||.++|-.+.+...-.... .+.......-...+.||++.|.-+.|+.+.+.|-+..
T Consensus 16 kL~c~~WNke~gy-IAcgG~dGlLKVlKl~t~t~d~~~~----glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD 90 (1189)
T KOG2041|consen 16 KLHCAEWNKESGY-IACGGADGLLKVLKLGTDTTDLNKS----GLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSD 90 (1189)
T ss_pred eEEEEEEcccCCe-EEeccccceeEEEEccccCCccccc----ccccccccchhhhhccCcceEEEEEeccccccccccC
Confidence 7889999999885 9999999999999987644321100 0011112222335899999999999999999999999
Q ss_pred cCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCcee-EEeecCCCCeEEeeec
Q 001352 417 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHGAPVYSLCPH 495 (1093)
Q Consensus 417 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~-~~~~~h~~~v~~~~~~ 495 (1093)
.+|.|.||-+-.|.-.... .-.....-|.+++|..||. .++..-.||.|.|=.++..+.- +.+++. ....+.|
T Consensus 91 t~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv~w- 164 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHVLW- 164 (1189)
T ss_pred CCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcchh--eccceee-
Confidence 9999999999888654432 1234566799999999999 6777888888877665433221 122221 1123445
Q ss_pred ccCCccEEEEEecCCeEEEEEcCCCC-------ceE----EecCCCCceEEEEE--------ccCCCEEEEEecCCCCce
Q 001352 496 AKENIHFIFSISVDGKIKAWLYDSLG-------ARV----DYDAPGLGCTRMAY--------SANGRRLFSCGTSKEGES 556 (1093)
Q Consensus 496 ~~~~~~~l~s~~~dg~i~vwd~~~~~-------~~~----~~~~~~~~v~~~~~--------s~d~~~l~~~~~~~~~~~ 556 (1093)
++|.+.++.+-..|.++++|.+..- +.. .+...+..+..+.| -||...++++.. +|
T Consensus 165 -s~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~----nG 239 (1189)
T KOG2041|consen 165 -SEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA----NG 239 (1189)
T ss_pred -cccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc----Cc
Confidence 4466677778888999999875321 101 11111223444444 247778888875 44
Q ss_pred eEEEEeCCC-CeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCceEEEEecCCCCCCC
Q 001352 557 FLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---------HVIKIWDMNKVQLLTTIDAGGGLPEN 626 (1093)
Q Consensus 557 ~i~iwd~~~-~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~v 626 (1093)
.+.+..-.+ ..++-.-.+ ..+....|+++|..+++++.+ +.|.+|.. -|..+.++...+. .|
T Consensus 240 r~QiMR~eND~~Pvv~dtg-----m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~--~I 311 (1189)
T KOG2041|consen 240 RMQIMRSENDPEPVVVDTG-----MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGS--CI 311 (1189)
T ss_pred eehhhhhcCCCCCeEEecc-----cEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCc--ee
Confidence 455543332 233322222 357888999999999998743 24555543 4677777776544 58
Q ss_pred ceEEEecCCCEEEEEECCCeEEEEEcCCC--------ceeeecccccccceeeeecCCC---ceeeeeccCCceEecCCC
Q 001352 627 PRICFNKNGTLLAVIANENRIKILETPES--------NSVDAAGVLSDNLRKLSVNPIS---TVTGAGIANGSVSVNEDP 695 (1093)
Q Consensus 627 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~--------~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 695 (1093)
++++|-..|-.++.+- |+.|.+=+++.. ..+........+..++.|.... ..+-.....-.+++
T Consensus 312 t~lsWEg~gLriA~Av-dsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~V~~~~~~a~---- 386 (1189)
T KOG2041|consen 312 TGLSWEGTGLRIAIAV-DSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKTVTHFENMAF---- 386 (1189)
T ss_pred eeeEEcCCceEEEEEe-cceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhhhcceeehhe----
Confidence 8999988777776654 466665554432 2233333444444444443111 00000111111111
Q ss_pred CCCCccceeecccccceecc-eeecc----CccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccC
Q 001352 696 KEDVKPEISVEAENKSEVEK-PLFAR----PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLT 770 (1093)
Q Consensus 696 s~d~~~l~s~~~d~~i~~w~-~~~~~----~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~ 770 (1093)
..+--.++.-..++.+.-+. ++... ...|..+..+....-..|.-.-..-++..++.++.+ .+.+|.+...+..
T Consensus 387 ~~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e-~~~iWhy~~pK~~ 465 (1189)
T KOG2041|consen 387 YREHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEE-RYFIWHYVLPKFN 465 (1189)
T ss_pred ecccEEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEeccc-cEEEEEEeccchh
Confidence 12222233333333333221 00000 001122222221122233333334456655555555 6788887654431
Q ss_pred cCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEEECCCCCCeEEE
Q 001352 771 LSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSL 850 (1093)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l 850 (1093)
..-. + ... +...-..+.-.|.| +-|+++ +.. ..++.+...+|.++
T Consensus 466 s~l~--------------~---~k~------rkegr~h~Ddtp~g-----a~d~~l---~ys----~kt~~G~~DpICAl 510 (1189)
T KOG2041|consen 466 SVLA--------------G---VKI------RKEGRFHGDDTPEG-----AQDRTL---EYS----TKTLLGSKDPICAL 510 (1189)
T ss_pred hhhh--------------h---hhh------cccccccCCCCccc-----hhhcee---ecc----ceeeccCCCcceee
Confidence 1000 0 000 00000011111222 012221 111 34566778899999
Q ss_pred EEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCC-ceeeeeeeec
Q 001352 851 AFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW-GIQTCRSLQT 929 (1093)
Q Consensus 851 ~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~ 929 (1093)
+.+. ++|.++-..|.|.-|++.+........ -+..|..++..-+...+|....-|.+.+.|+.-. .......+..
T Consensus 511 ~~sd---k~l~vareSG~I~rySl~nv~l~n~y~-~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~ 586 (1189)
T KOG2041|consen 511 CISD---KFLMVARESGGIYRYSLNNVVLTNSYP-VNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYT 586 (1189)
T ss_pred eecc---eEEEEEeccCceEEEEecceeeeeccc-cCchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeeh
Confidence 9963 689999999999999999877666554 4566889999888889999888899999888721 1111111222
Q ss_pred CCCcccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCc
Q 001352 930 PDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEEL 968 (1093)
Q Consensus 930 ~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~ 968 (1093)
.+. ..|..+.|..|+..+++ -....++|++-.+.
T Consensus 587 ~er-----rDVWd~~Wa~dNp~llAlmeKtrmyifrgndp 621 (1189)
T KOG2041|consen 587 SER-----RDVWDYEWAQDNPNLLALMEKTRMYIFRGNDP 621 (1189)
T ss_pred hhh-----hhhhhhhhccCCchHHhhhhhceEEEecCcCc
Confidence 211 25889999999887776 44456788775543
No 238
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=4.3e-12 Score=143.90 Aligned_cols=223 Identities=14% Similarity=0.100 Sum_probs=145.9
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEEcC---CEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEE
Q 001352 393 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 469 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~dg~~las~~~d---~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~ 469 (1093)
+..+...+.+.+|||||+.|+..+.+ ..|.+||+.+++... +....+.+.+.+|+|||+. ++++.+.++...
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~ 265 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----VANFKGSNSAPAWSPDGRT-LAVALSRDGNSQ 265 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEEccCCCce
Confidence 44577889999999999999988643 469999999886432 3334455678999999995 344667788766
Q ss_pred EEE--CCCCceeEEeecCCCCeEEeeecccCCccEEEEEec-CCeEEEEEcC--CCCceEEecCCCCceEEEEEccCCCE
Q 001352 470 VWD--AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYD--SLGARVDYDAPGLGCTRMAYSANGRR 544 (1093)
Q Consensus 470 vwd--~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~i~vwd~~--~~~~~~~~~~~~~~v~~~~~s~d~~~ 544 (1093)
||. +.++. ...+..+........|+ +||+.|+..+. +|...+|.++ .+.. ..+...........|+|||++
T Consensus 266 Iy~~d~~~~~-~~~lt~~~~~~~~~~wS--pDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~~~SpDG~~ 341 (427)
T PRK02889 266 IYTVNADGSG-LRRLTQSSGIDTEPFFS--PDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNTSPRISPDGKL 341 (427)
T ss_pred EEEEECCCCC-cEECCCCCCCCcCeEEc--CCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcCceEECCCCCE
Confidence 664 44444 55565565555666774 56777766554 5667777654 3332 222222333446789999999
Q ss_pred EEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCceEEEEecCC
Q 001352 545 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH---VIKIWDMNKVQLLTTIDAGG 621 (1093)
Q Consensus 545 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~ 621 (1093)
++..+..+ +...|.+||+.+++......+ .......|+||++.|+.++.++ .+++.+. ++.....+..+.
T Consensus 342 Ia~~s~~~-g~~~I~v~d~~~g~~~~lt~~-----~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~ 414 (427)
T PRK02889 342 LAYISRVG-GAFKLYVQDLATGQVTALTDT-----TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQG 414 (427)
T ss_pred EEEEEccC-CcEEEEEEECCCCCeEEccCC-----CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCC
Confidence 99776432 245799999998876543322 1235678999999998876544 3555566 455555554332
Q ss_pred CCCCCceEEEec
Q 001352 622 GLPENPRICFNK 633 (1093)
Q Consensus 622 ~~~~v~~v~~s~ 633 (1093)
..+...+|+|
T Consensus 415 --g~~~~p~wsp 424 (427)
T PRK02889 415 --GDVREPSWGP 424 (427)
T ss_pred --CCCCCCccCC
Confidence 2356677776
No 239
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.49 E-value=2.5e-12 Score=134.42 Aligned_cols=252 Identities=10% Similarity=0.130 Sum_probs=166.6
Q ss_pred CceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEE-----CCCCCE
Q 001352 337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW-----SPDGSL 411 (1093)
Q Consensus 337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~-----s~dg~~ 411 (1093)
.+....++-.|++|+.-- ...+.+|+...+..+.. ++.+..+.+ ....|-+| .|.+--
T Consensus 125 ~~~~~~~~~~gd~lcFnv--g~~lyv~~~~g~~~~~~-------------pi~k~~y~g--t~P~cHdfn~~~a~~~g~d 187 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNV--GRELYVYSYRGAADLSK-------------PIDKREYKG--TSPTCHDFNSFTATPKGLD 187 (636)
T ss_pred ceeeccccCCCCEEEEec--CCeEEEEEccCcchhcc-------------chhhhcccC--CCCceecccccccCCCCcc
Confidence 445556666777755543 35688998886544431 112222222 23344444 356778
Q ss_pred EEEEEcCCEEEEEEccCCCcccceEEec--cccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCe
Q 001352 412 LGVAYSKHIVQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 489 (1093)
Q Consensus 412 las~~~d~~i~iwd~~~~~~~~~~~~~~--~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v 489 (1093)
|..|-..|.|.+.|....+ +..+.... -....|+|+.|-|.+.. .++.+-.+|.+.++|.. +....
T Consensus 188 llIGf~tGqvq~idp~~~~-~sklfne~r~i~ktsvT~ikWvpg~~~-~Fl~a~~sGnlyly~~~----------~~~~~ 255 (636)
T KOG2394|consen 188 LLIGFTTGQVQLIDPINFE-VSKLFNEERLINKSSVTCIKWVPGSDS-LFLVAHASGNLYLYDKE----------IVCGA 255 (636)
T ss_pred eEEeeccCceEEecchhhH-HHHhhhhcccccccceEEEEEEeCCCc-eEEEEEecCceEEeecc----------ccccC
Confidence 8889888999999877632 22111111 23468999999998776 56667779999999851 11112
Q ss_pred EEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeee
Q 001352 490 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 569 (1093)
Q Consensus 490 ~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 569 (1093)
+..++....++..+.....-+. .+...+..+....+.|...+|+|||++||+.+. |++++|+|..+.+++
T Consensus 256 t~p~~~~~k~~~~f~i~t~ksk------~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSq----DGfLRvF~fdt~eLl 325 (636)
T KOG2394|consen 256 TAPSYQALKDGDQFAILTSKSK------KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQ----DGFLRIFDFDTQELL 325 (636)
T ss_pred CCCcccccCCCCeeEEeeeecc------ccCCccceeEeccccccceeEcCCCceEEEEec----CceEEEeeccHHHHH
Confidence 2222222223223322211100 111233333444558899999999999999987 889999999999988
Q ss_pred eeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEe
Q 001352 570 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 632 (1093)
Q Consensus 570 ~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 632 (1093)
..++..- +...|++|+|||++|++|++|.-|.||.+..++.+..-. ++...|..|+|.
T Consensus 326 g~mkSYF---GGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq--GHkSWVs~VaFD 383 (636)
T KOG2394|consen 326 GVMKSYF---GGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ--GHKSWVSVVAFD 383 (636)
T ss_pred HHHHhhc---cceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecc--ccccceeeEeec
Confidence 8877766 789999999999999999999999999999988887655 446678888887
No 240
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=2.4e-12 Score=146.63 Aligned_cols=227 Identities=15% Similarity=0.148 Sum_probs=148.4
Q ss_pred HHHhhccCCCCceeeeecCCCceEEEEEcc--CCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEE
Q 001352 327 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTN--VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 404 (1093)
Q Consensus 327 ~~~~l~~h~~~V~~~~~spdg~~llasg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 404 (1093)
..+.+..|...+.+.+|||||++++.+... ...|.+||+.+|+... +..+.+...+++
T Consensus 195 ~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~~~~g~~~~~~ 254 (433)
T PRK04922 195 NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--------------------VASFRGINGAPS 254 (433)
T ss_pred CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE--------------------eccCCCCccCce
Confidence 344566677789999999999974444322 3469999999887543 223344556789
Q ss_pred ECCCCCEEEEE-EcCC--EEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEc-CCCc--EEEEECCCCce
Q 001352 405 WSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDKT--IKVWDAVTGSR 478 (1093)
Q Consensus 405 ~s~dg~~las~-~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~-~d~~--i~vwd~~~~~~ 478 (1093)
|||||+.|+.. +.++ .|.+||+.+++.. .+..+.......+|+|||++ ++..+ .++. |.++|+.+++.
T Consensus 255 ~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG~~--l~f~sd~~g~~~iy~~dl~~g~~ 328 (433)
T PRK04922 255 FSPDGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDGKS--IYFTSDRGGRPQIYRVAASGGSA 328 (433)
T ss_pred ECCCCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCCCE--EEEEECCCCCceEEEEECCCCCe
Confidence 99999988754 4444 6999999887632 34456556678899999994 44443 4454 66677777764
Q ss_pred eEEeecCCCCeEEeeecccCCccEEEEEecCC---eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCc
Q 001352 479 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 555 (1093)
Q Consensus 479 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~ 555 (1093)
.. +..+.......+|+ +||++|+..+.++ .|.+||+.++... .+. +........|+|||++++..+.. .+.
T Consensus 329 ~~-lt~~g~~~~~~~~S--pDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~-~g~ 402 (433)
T PRK04922 329 ER-LTFQGNYNARASVS--PDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATRE-GGR 402 (433)
T ss_pred EE-eecCCCCccCEEEC--CCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEec-CCc
Confidence 33 32233334456664 5677777665443 5899998776654 332 22234567999999999887654 346
Q ss_pred eeEEEEeCCCCeeeeeeecccccCCCeEEEEEcC
Q 001352 556 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 589 (1093)
Q Consensus 556 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~ 589 (1093)
..|++++...+ ..+.+..+. +.+...+|+|
T Consensus 403 ~~L~~~~~~g~-~~~~l~~~~---g~~~~p~wsp 432 (433)
T PRK04922 403 GVLAAVSTDGR-VRQRLVSAD---GEVREPAWSP 432 (433)
T ss_pred eEEEEEECCCC-ceEEcccCC---CCCCCCccCC
Confidence 67999998544 444444333 4556666765
No 241
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.48 E-value=9.4e-11 Score=122.41 Aligned_cols=365 Identities=12% Similarity=0.158 Sum_probs=226.2
Q ss_pred EEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCE
Q 001352 514 AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 593 (1093)
Q Consensus 514 vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~ 593 (1093)
+|...+......+....-++..+++||.|.+|++... ..|.+|....+..+..+.. ..|..+.|+|++++
T Consensus 16 f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~-----~~V~~~~g~~~~~l~~~~~-----~~V~~~~fSP~~kY 85 (561)
T COG5354 16 FWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHA-----AGVECWGGPSKAKLVRFRH-----PDVKYLDFSPNEKY 85 (561)
T ss_pred eecCccccccccccccCcchhheeecCcchheehhhc-----cceEEccccchhheeeeec-----CCceecccCcccce
Confidence 3544444444445546668889999999999998764 2399999888776655554 45999999999999
Q ss_pred EEEEeCCC---------------cEEEEECCCCceEEEEecCCCCCCCc-eEEEecCCCEEEEEECCCeEEEEEcCCCce
Q 001352 594 ILAAGDDH---------------VIKIWDMNKVQLLTTIDAGGGLPENP-RICFNKNGTLLAVIANENRIKILETPESNS 657 (1093)
Q Consensus 594 l~~~~~dg---------------~i~iwd~~~~~~~~~~~~~~~~~~v~-~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 657 (1093)
|.+-+..+ .+.+||..+|..+..+.......... -+.|+-+.+++|-. ....+.|+++...-.
T Consensus 86 L~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~ 164 (561)
T COG5354 86 LVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIE 164 (561)
T ss_pred eeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCccc
Confidence 99865433 49999999999999887654432233 68899888877765 345789998632211
Q ss_pred eeeccc-ccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCcccccc
Q 001352 658 VDAAGV-LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN 736 (1093)
Q Consensus 658 ~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 736 (1093)
...+.. ....+....++|.+.. ..+..
T Consensus 165 ~~p~~~lr~~gi~dFsisP~~n~-----------------------------~~la~----------------------- 192 (561)
T COG5354 165 EHPFKNLRPVGILDFSISPEGNH-----------------------------DELAY----------------------- 192 (561)
T ss_pred cCchhhccccceeeEEecCCCCC-----------------------------ceEEE-----------------------
Confidence 111110 1122333333321100 00011
Q ss_pred ceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCC
Q 001352 737 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 816 (1093)
Q Consensus 737 ~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 816 (1093)
|.|.. .+..+.+++|.++.++. +.+..+ ....-..+.|.+.|.
T Consensus 193 ------~tPEk-----~~kpa~~~i~sIp~~s~----------------------l~tk~l----fk~~~~qLkW~~~g~ 235 (561)
T COG5354 193 ------WTPEK-----LNKPAMVRILSIPKNSV----------------------LVTKNL----FKVSGVQLKWQVLGK 235 (561)
T ss_pred ------Ecccc-----CCCCcEEEEEEccCCCe----------------------eeeeee----EeecccEEEEecCCc
Confidence 11110 12345666666654322 111111 011112345555565
Q ss_pred EEEEEe------------CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEE--EeCCCeEEEEEcCCcceeee
Q 001352 817 YLFSAS------------GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI--GMDDSTILIYNARSSEVISK 882 (1093)
Q Consensus 817 ~la~~~------------dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~las--g~~dg~i~iwd~~~~~~~~~ 882 (1093)
++++-- ...+.|+++... .+.......++|...+|.| .++.+++ |..+-.+.++|++.. +...
T Consensus 236 ~ll~l~~t~~ksnKsyfgesnLyl~~~~e~-~i~V~~~~~~pVhdf~W~p-~S~~F~vi~g~~pa~~s~~~lr~N-l~~~ 312 (561)
T COG5354 236 YLLVLVMTHTKSNKSYFGESNLYLLRITER-SIPVEKDLKDPVHDFTWEP-LSSRFAVISGYMPASVSVFDLRGN-LRFY 312 (561)
T ss_pred eEEEEEEEeeecccceeccceEEEEeeccc-ccceeccccccceeeeecc-cCCceeEEecccccceeecccccc-eEEe
Confidence 554321 245888888733 3333335678999999999 5554444 357789999999854 4433
Q ss_pred cccccCCeEEEEEeCCCCEEEEEeCC---CcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE----
Q 001352 883 LEGHSKRVTGLVFSDALNILVSSGGD---AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV---- 955 (1093)
Q Consensus 883 l~~h~~~V~~l~~s~dg~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~---- 955 (1093)
+. ..+=..+.|||.+++++.++-| |.+.+||..+.- .++....+. ..+.+.|||||.++.+.
T Consensus 313 ~P--e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf----~~~~~~~~~-----n~s~~~wspd~qF~~~~~ts~ 381 (561)
T COG5354 313 FP--EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRF----KVAGAFNGL-----NTSYCDWSPDGQFYDTDTTSE 381 (561)
T ss_pred cC--CcccccccccCcccEEEEecCCccccceEEeccCCce----EEEEEeecC-----CceEeeccCCceEEEecCCCc
Confidence 33 3334568899999999998876 569999998743 222222221 35678899999999873
Q ss_pred ---eCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCC
Q 001352 956 ---HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG 1001 (1093)
Q Consensus 956 ---~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg 1001 (1093)
.|..+.|||+...... ..+.+.|.|.|++..|.+.+.
T Consensus 382 k~~~Dn~i~l~~v~g~~~f---------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 382 KLRVDNSIKLWDVYGAKVF---------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred ccccCcceEEEEecCchhh---------hhhhccccCCcccceeeccCC
Confidence 3678999998643322 456678889898888777665
No 242
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=2.5e-12 Score=145.88 Aligned_cols=228 Identities=19% Similarity=0.196 Sum_probs=146.3
Q ss_pred HHhhccCCCCceeeeecCCCceEEEEEccC--CcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEE
Q 001352 328 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 405 (1093)
Q Consensus 328 ~~~l~~h~~~V~~~~~spdg~~llasg~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 405 (1093)
.+.+..+.+.+.+.+|||||++++.+...+ ..|.+||+.+|+... +....+.+.+.+|
T Consensus 188 ~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--------------------l~~~~g~~~~~~~ 247 (427)
T PRK02889 188 AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--------------------VANFKGSNSAPAW 247 (427)
T ss_pred ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------eecCCCCccceEE
Confidence 344556777899999999999744443222 459999999987543 2223355678999
Q ss_pred CCCCCEEEE-EEcCCEEEEEEc--cCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE--CCCCceeE
Q 001352 406 SPDGSLLGV-AYSKHIVQLYAY--HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD--AVTGSRTY 480 (1093)
Q Consensus 406 s~dg~~las-~~~d~~i~iwd~--~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd--~~~~~~~~ 480 (1093)
||||+.|+. .+.++...||.+ .++. .+ .+..+...+....|+|||+. ++++...++...||. +.+++..
T Consensus 248 SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~-l~f~s~~~g~~~Iy~~~~~~g~~~- 321 (427)
T PRK02889 248 SPDGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRS-IYFTSDRGGAPQIYRMPASGGAAQ- 321 (427)
T ss_pred CCCCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCE-EEEEecCCCCcEEEEEECCCCceE-
Confidence 999999875 566776666654 4443 22 34456666678899999995 233444456666665 4455432
Q ss_pred EeecCCCCeEEeeecccCCccEEEEEecCC---eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCcee
Q 001352 481 SFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 557 (1093)
Q Consensus 481 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~ 557 (1093)
.+..+........| ++||++|+..+.++ .|.+||+.++....... ........|+|||+.|+..+..+ +...
T Consensus 322 ~lt~~g~~~~~~~~--SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~~~-g~~~ 396 (427)
T PRK02889 322 RVTFTGSYNTSPRI--SPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQQG-GRSV 396 (427)
T ss_pred EEecCCCCcCceEE--CCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEecC-CCEE
Confidence 22222222334556 45778888776554 59999998776543322 22346789999999999887643 3566
Q ss_pred EEEEeCCCCeeeeeeecccccCCCeEEEEEcCC
Q 001352 558 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA 590 (1093)
Q Consensus 558 i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~ 590 (1093)
+++.+. +|...+.+..+. +.+...+|+|-
T Consensus 397 l~~~~~-~g~~~~~l~~~~---g~~~~p~wsp~ 425 (427)
T PRK02889 397 LAAVSS-DGRIKQRLSVQG---GDVREPSWGPF 425 (427)
T ss_pred EEEEEC-CCCceEEeecCC---CCCCCCccCCC
Confidence 777777 455555555443 55666777763
No 243
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.47 E-value=4.7e-08 Score=119.01 Aligned_cols=519 Identities=12% Similarity=0.162 Sum_probs=291.8
Q ss_pred CCeEEEEECCCCCEEEEEEcCC----EEEEEEccCCCcccceEEec-----cccccEEEEEeeCCCCcEEEEEEcCCCcE
Q 001352 398 VSVNRVVWSPDGSLLGVAYSKH----IVQLYAYHGGSDARQQLEID-----AHVGNVNDLAFSAPCKQISVITCGDDKTI 468 (1093)
Q Consensus 398 ~~V~~v~~s~dg~~las~~~d~----~i~iwd~~~~~~~~~~~~~~-----~h~~~v~~~~~s~d~~~l~l~s~~~d~~i 468 (1093)
..+...+|.++...+.++.... .|.+.....+........+. ...+.|.++.|.++.. .++.+..+|.|
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~--~l~~~~~~Gdi 99 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSE--SLCIALASGDI 99 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCC--cEEEEECCceE
Confidence 4677778877665544443322 23444333322222222332 2346899999999998 56777778888
Q ss_pred EEE----ECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcC------------C-C----------C
Q 001352 469 KVW----DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD------------S-L----------G 521 (1093)
Q Consensus 469 ~vw----d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~------------~-~----------~ 521 (1093)
.+. |..+.. +.....-...|.+++|+| |++.|+..+.+|++.+-.-+ . + +
T Consensus 100 ~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSP--D~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGk 176 (928)
T PF04762_consen 100 ILVREDPDPDEDE-IEIVGSVDSGILAASWSP--DEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGK 176 (928)
T ss_pred EEEEccCCCCCce-eEEEEEEcCcEEEEEECC--CcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCc
Confidence 888 433332 222223567899999955 66799999989888765321 0 0 0
Q ss_pred ceEEecC------------------------CCCceEEEEEccCCCEEEEEecCCC-C-ceeEEEEeCCCCeeeeeeecc
Q 001352 522 ARVDYDA------------------------PGLGCTRMAYSANGRRLFSCGTSKE-G-ESFLVEWNESEGAIKRTYQGL 575 (1093)
Q Consensus 522 ~~~~~~~------------------------~~~~v~~~~~s~d~~~l~~~~~~~~-~-~~~i~iwd~~~~~~~~~~~~~ 575 (1093)
....+.+ ....-..++|-.||.++|+.+.+.. + ...+++|+-+ |.+..+....
T Consensus 177 KeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v 255 (928)
T PF04762_consen 177 KETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPV 255 (928)
T ss_pred ccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccC
Confidence 0000000 1223467899999999998876332 2 5889999955 7665555433
Q ss_pred cccCCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCceEEEEecC--CCCCCCceEEEecCCCEEEEEECCCeEEEE
Q 001352 576 QLQHNSVSVVHFDTAKDQILAAGD---DHVIKIWDMNKVQLLTTIDAG--GGLPENPRICFNKNGTLLAVIANENRIKIL 650 (1093)
Q Consensus 576 ~~~~~~v~~v~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 650 (1093)
. +--.+++|-|.|+.|++... ...|.+|..+ |-.-..+... .....|..+.|++|+..||+...|. |.+|
T Consensus 256 ~---gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLW 330 (928)
T PF04762_consen 256 D---GLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLW 330 (928)
T ss_pred C---CccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEE
Confidence 3 44567899999999888653 4567777754 4444444432 2334689999999999999988665 9999
Q ss_pred EcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccC
Q 001352 651 ETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLP 730 (1093)
Q Consensus 651 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~ 730 (1093)
...+-....+..- .+.
T Consensus 331 t~~NYHWYLKqei--------~~~-------------------------------------------------------- 346 (928)
T PF04762_consen 331 TRSNYHWYLKQEI--------RFS-------------------------------------------------------- 346 (928)
T ss_pred EeeCCEEEEEEEE--------Ecc--------------------------------------------------------
Confidence 8876543321110 000
Q ss_pred ccccccceEEEEeecCC-ceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEE
Q 001352 731 SKVKANKISRLTYNNGG-QAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF 809 (1093)
Q Consensus 731 ~~~~~~~i~~l~~s~~g-~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 809 (1093)
....+..+.|+|.. ..|...+.+|.+..+++.- ++..+.
T Consensus 347 ---~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~------------------~v~~s~------------------- 386 (928)
T PF04762_consen 347 ---SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAW------------------DVSRSP------------------- 386 (928)
T ss_pred ---CCCCCCceEECCCCCCEEEEEecCCcEEEEEEEE------------------EEEecC-------------------
Confidence 01112225555533 3355555556666655431 111110
Q ss_pred EEcc-CCCEEEEEeCCeEEEEEccCceeE-----EEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcce----
Q 001352 810 ALSK-NDAYLFSASGGVISLYIVMTFKTI-----LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV---- 879 (1093)
Q Consensus 810 ~~s~-dg~~la~~~dg~i~iwd~~~~~~~-----~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~---- 879 (1093)
..+| |...+++..+.++.+-.+...-.. ..+. ....|.+++|++ ++..+|+-..||.|.+|.......
T Consensus 387 ~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~-~~~~~avl~~d~~l~~~~~~~~~~~~~~ 464 (928)
T PF04762_consen 387 GSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSP-SNSRFAVLTSDGSLSIYEWDLKNMWSVK 464 (928)
T ss_pred CCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeC-CCCeEEEEECCCCEEEEEecCCCccccc
Confidence 0112 222344444455666665543221 2222 346899999999 677789999999999998644221
Q ss_pred ----eeecc----------cccCCeEEEEEeCCCCEEEEEeCC---CcEEEEeCCCCceeeeeeeecCCCcccCCCCceE
Q 001352 880 ----ISKLE----------GHSKRVTGLVFSDALNILVSSGGD---AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH 942 (1093)
Q Consensus 880 ----~~~l~----------~h~~~V~~l~~s~dg~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 942 (1093)
...+. .-...+..++|..+...++....+ ..+.++++...+... ......... ..+..
T Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~---~~~~~ 539 (928)
T PF04762_consen 465 PPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSA--SVESSTEVD---GVVLI 539 (928)
T ss_pred CcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCce--eEEEEeccC---ceEEE
Confidence 11111 123457888998887777666554 578888885432111 111111111 13445
Q ss_pred EEEccCCCEEEE-EeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCC---EEEEEeCCCcEEEEEcCCCceEEEec
Q 001352 943 IQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR---MVFTSFVDGTLSIHEASNLEVQCRIL 1018 (1093)
Q Consensus 943 ~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~---~l~t~~~dg~v~vwd~~~~~~~~~~~ 1018 (1093)
+...++...++. ..+|.+..++..........++. ..+-..++...+.. .++.-+..|.+++ ++..++
T Consensus 540 ~~~~~~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~-~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~la--- 611 (928)
T PF04762_consen 540 ISSSPDSGSLYIQTNDGKVFQLSSDGELSQIVKFPQ-PCPWMEVCQINGSEDKRVLFGLSSNGRLYA----NSRLLA--- 611 (928)
T ss_pred EeeCCCCcEEEEEECCCEEEEeecCCCccccccCCC-CCcEEEEEEECCccceeEEEEECCCCEEEE----CCEEEe---
Confidence 555555553444 67888887666544332211211 22233333333333 3443333444443 334432
Q ss_pred cccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecC
Q 001352 1019 STAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1062 (1093)
Q Consensus 1019 ~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~ 1062 (1093)
..+. +++.+ +.+|+.......+++..+.
T Consensus 612 -----------~~~t--SF~v~---~~~Ll~TT~~h~l~fv~L~ 639 (928)
T PF04762_consen 612 -----------SNCT--SFAVT---DSFLLFTTTQHTLKFVHLN 639 (928)
T ss_pred -----------cCCc--eEEEE---cCEEEEEecCceEEEEECc
Confidence 1233 34444 3678888888899999997
No 244
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=5.9e-11 Score=125.62 Aligned_cols=286 Identities=11% Similarity=0.114 Sum_probs=186.8
Q ss_pred CceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEE-
Q 001352 337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA- 415 (1093)
Q Consensus 337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~- 415 (1093)
.....++|++|+ ++|.+ .+..|.|++..++..+.+. ....+.++.|||-|.+|.+=
T Consensus 36 ~~~v~~~S~~G~-lfA~~-~~~~v~i~~~~~~~~~lt~---------------------~~~~~~~L~fSP~g~yL~T~e 92 (566)
T KOG2315|consen 36 PCNVFAYSNNGR-LFAYS-DNQVVKVFEIATLKVVLCV---------------------ELKKTYDLLFSPKGNYLLTWE 92 (566)
T ss_pred cceeEEEcCCCc-EEEEE-cCCeEEEEEccCCcEEEEe---------------------ccceeeeeeeccccccccccc
Confidence 467889999998 46664 5688999999988644321 12278899999999999762
Q ss_pred ----EcC-----CEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCC
Q 001352 416 ----YSK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 486 (1093)
Q Consensus 416 ----~~d-----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~ 486 (1093)
..+ ..+.+|+++++.... ....+ .... ++..|+.|.. ++.--..+.+.+|++..-+.+. -+-|.
T Consensus 93 ~~~i~~~~~~~~pn~~v~~vet~~~~s-~~q~k-~Q~~-W~~qfs~dEs---l~arlv~nev~f~~~~~f~~~~-~kl~~ 165 (566)
T KOG2315|consen 93 PWAIYGPKNASNPNVLVYNVETGVQRS-QIQKK-MQNG-WVPQFSIDES---LAARLVSNEVQFYDLGSFKTIQ-HKLSV 165 (566)
T ss_pred ccccccCCCCCCCceeeeeeccceehh-heehh-hhcC-cccccccchh---hhhhhhcceEEEEecCCcccee-eeeec
Confidence 122 347899999953322 11212 2222 6899999986 4444445679999987743322 12367
Q ss_pred CCeEEeeecccCCccEEEE-----EecCCeEEEEEcCCCCceEEecC---CCCceEEEEEccCCCEEEEE-ecCC-----
Q 001352 487 APVYSLCPHAKENIHFIFS-----ISVDGKIKAWLYDSLGARVDYDA---PGLGCTRMAYSANGRRLFSC-GTSK----- 552 (1093)
Q Consensus 487 ~~v~~~~~~~~~~~~~l~s-----~~~dg~i~vwd~~~~~~~~~~~~---~~~~v~~~~~s~d~~~l~~~-~~~~----- 552 (1093)
..|..+.++|.+.-..+++ .+.-+.|++|.......-..... ....-..+.|++-|.-|++. +.+-
T Consensus 166 ~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~ 245 (566)
T KOG2315|consen 166 SGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNA 245 (566)
T ss_pred cceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCc
Confidence 7888888887755555554 35566799997762222111110 11123457788877654432 2211
Q ss_pred --CCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEE--EeCCCcEEEEECCCCceEEEEecCCCCCCCce
Q 001352 553 --EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 628 (1093)
Q Consensus 553 --~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 628 (1093)
-|+..+++.+++.......+.. .++|.++.|+|++..+++ |-+--.+.|+|++ +..+..+.. ++-++
T Consensus 246 SYYGEq~Lyll~t~g~s~~V~L~k----~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~e----gpRN~ 316 (566)
T KOG2315|consen 246 SYYGEQTLYLLATQGESVSVPLLK----EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPE----GPRNT 316 (566)
T ss_pred cccccceEEEEEecCceEEEecCC----CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCC----CCccc
Confidence 2456788888873333333322 489999999999977665 6688899999985 455555542 23578
Q ss_pred EEEecCCCEEEEEECC---CeEEEEEcCCCceeeec
Q 001352 629 ICFNKNGTLLAVIANE---NRIKILETPESNSVDAA 661 (1093)
Q Consensus 629 v~~s~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~ 661 (1093)
+-|+|.|++++.++-+ |.|.+||+.+.+.+..+
T Consensus 317 ~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~ 352 (566)
T KOG2315|consen 317 AFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKF 352 (566)
T ss_pred eEECCCCCEEEEeecCCCCCceEEEeccchhhcccc
Confidence 9999999999988764 88999999876555443
No 245
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=6.7e-12 Score=126.59 Aligned_cols=272 Identities=13% Similarity=0.122 Sum_probs=193.0
Q ss_pred CCCceeeeecCCCceEEEEEc-cCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEE
Q 001352 335 SSSPMSMDFHPVQHTLLLVGT-NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 413 (1093)
Q Consensus 335 ~~~V~~~~~spdg~~llasg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~la 413 (1093)
...|+.++|--|++.=+..+. .+-.+............. .||+.. ......+|..++.. ...|+
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~~---------~~l~~~~I~gl~~~--dg~Li 119 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAKT---------VSLGTKSIKGLKLA--DGTLI 119 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccc----cccccc---------cccccccccchhhc--CCEEE
Confidence 447888888877754344443 555666666655544432 233222 23345566666654 34677
Q ss_pred EEEcCCEEEEEEccCCCccc-ceEEeccccccEEEEEeeCCCCcEEEEEEcCC--CcEEEEECCCCceeEEeecC-----
Q 001352 414 VAYSKHIVQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDD--KTIKVWDAVTGSRTYSFEGH----- 485 (1093)
Q Consensus 414 s~~~d~~i~iwd~~~~~~~~-~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d--~~i~vwd~~~~~~~~~~~~h----- 485 (1093)
+|-.+|.+.+|..+.+..-. ....+..+ ..+..+.-++.... ++++||.. ..+.|||++..+.+.+-+.-
T Consensus 120 tc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L 197 (412)
T KOG3881|consen 120 TCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRL 197 (412)
T ss_pred EEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCccc
Confidence 78889999999998554211 11123323 45667777776665 67779988 88999999998666543321
Q ss_pred ----CCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001352 486 ----GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 560 (1093)
Q Consensus 486 ----~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~i 560 (1093)
.-.++++.|.+..+...+++++.-+.+++||.+.++. +..+.....+++++...|+|++++++.. .+.+..
T Consensus 198 ~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~----~g~l~~ 273 (412)
T KOG3881|consen 198 GLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT----KGQLAK 273 (412)
T ss_pred cceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc----cchhhe
Confidence 1234566676554468999999999999999997654 4477778889999999999999999865 566999
Q ss_pred EeCCCCeeeee-eecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEec
Q 001352 561 WNESEGAIKRT-YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 633 (1093)
Q Consensus 561 wd~~~~~~~~~-~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 633 (1093)
+|++++..... +.+.. +.+.++..+|..++++++|-|..|||+|+.+.+++...-.... .+++.+.+
T Consensus 274 FD~r~~kl~g~~~kg~t---Gsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~---lt~il~~~ 341 (412)
T KOG3881|consen 274 FDLRGGKLLGCGLKGIT---GSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSR---LTFILLRD 341 (412)
T ss_pred ecccCceeeccccCCcc---CCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhcc---ccEEEecC
Confidence 99999998877 77777 8999999999999999999999999999999777765544322 45555544
No 246
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.47 E-value=3.4e-11 Score=125.64 Aligned_cols=280 Identities=14% Similarity=0.114 Sum_probs=188.8
Q ss_pred CceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEE
Q 001352 337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 416 (1093)
Q Consensus 337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~ 416 (1093)
++..+.|||.|++ |++.. -..|.+|+-..+..+..+ -...|..+.|||.++||.+=+
T Consensus 34 p~~~~~~SP~G~~-l~~~~-~~~V~~~~g~~~~~l~~~---------------------~~~~V~~~~fSP~~kYL~tw~ 90 (561)
T COG5354 34 PVAYVSESPLGTY-LFSEH-AAGVECWGGPSKAKLVRF---------------------RHPDVKYLDFSPNEKYLVTWS 90 (561)
T ss_pred chhheeecCcchh-eehhh-ccceEEccccchhheeee---------------------ecCCceecccCcccceeeeec
Confidence 7889999999996 66543 356999998877655331 235799999999999999865
Q ss_pred cCC---------------EEEEEEccCCCcccceEEecccccc--EE-EEEeeCCCCcEEEEEEcCCCcEEEEECCCCce
Q 001352 417 SKH---------------IVQLYAYHGGSDARQQLEIDAHVGN--VN-DLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 478 (1093)
Q Consensus 417 ~d~---------------~i~iwd~~~~~~~~~~~~~~~h~~~--v~-~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~ 478 (1093)
..+ .+.+||..+|..+. .+.+-..+ .+ -+.|+-+.+ +++=. ....++|+++ ++..
T Consensus 91 ~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~---sf~~~~q~~~~Wp~~k~s~~D~--y~ARv-v~~sl~i~e~-t~n~ 163 (561)
T COG5354 91 REPIIEPEIEISPFTSKNNVFVWDIASGMIVF---SFNGISQPYLGWPVLKFSIDDK--YVARV-VGSSLYIHEI-TDNI 163 (561)
T ss_pred cCCccChhhccCCccccCceeEEeccCceeEe---eccccCCcccccceeeeeecch--hhhhh-ccCeEEEEec-CCcc
Confidence 433 49999999987655 44444444 44 678999887 33332 2346999997 4432
Q ss_pred e-EEeec-CCCCeEEeeecccCCccEEEE-----EecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEec-
Q 001352 479 T-YSFEG-HGAPVYSLCPHAKENIHFIFS-----ISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT- 550 (1093)
Q Consensus 479 ~-~~~~~-h~~~v~~~~~~~~~~~~~l~s-----~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~- 550 (1093)
. ..+.. ....|....++|..++..|+. .+.++++++|.+.....+.........-..+.|.+.|+++++-..
T Consensus 164 ~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t 243 (561)
T COG5354 164 EEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMT 243 (561)
T ss_pred ccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEE
Confidence 2 12211 124567777877766666554 467788999998866555544433333346788899988765321
Q ss_pred ------CCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEE--EeCCCcEEEEECCCCceEEEEecCCC
Q 001352 551 ------SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA--AGDDHVIKIWDMNKVQLLTTIDAGGG 622 (1093)
Q Consensus 551 ------~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~ 622 (1093)
+.-++..++++++..... ....... ++|...+|.|.++.+++ |-.+-.+.++|++.. ....+...
T Consensus 244 ~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~---~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~-- 316 (561)
T COG5354 244 HTKSNKSYFGESNLYLLRITERSI-PVEKDLK---DPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQ-- 316 (561)
T ss_pred eeecccceeccceEEEEeeccccc-ceecccc---ccceeeeecccCCceeEEecccccceeecccccc-eEEecCCc--
Confidence 111345688888874333 2222333 89999999999888766 458889999999876 44444322
Q ss_pred CCCCceEEEecCCCEEEEEECC---CeEEEEEcCCC
Q 001352 623 LPENPRICFNKNGTLLAVIANE---NRIKILETPES 655 (1093)
Q Consensus 623 ~~~v~~v~~s~~~~~l~~~~~d---g~i~iw~~~~~ 655 (1093)
.-+.+.|+|.++++++++-| |.+.+|+....
T Consensus 317 --~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r 350 (561)
T COG5354 317 --KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR 350 (561)
T ss_pred --ccccccccCcccEEEEecCCccccceEEeccCCc
Confidence 23678999999999997765 66777776643
No 247
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=4.9e-10 Score=113.24 Aligned_cols=280 Identities=11% Similarity=0.105 Sum_probs=185.5
Q ss_pred cccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeecc---ceeEEeeecCcccCcCcccccccCCccc
Q 001352 708 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN---GVHLMWRWPRNDLTLSTEATTKVPPRLY 784 (1093)
Q Consensus 708 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d---g~v~vw~~~~~~~~~~~~~~~~~~~~~~ 784 (1093)
+.-|.+|+++.......... .....+..+-++++++++.|.++..+ |.+.-|.++.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~---~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~------------------ 73 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQ---LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDP------------------ 73 (346)
T ss_pred CCceEEEEEeCcccccchhh---hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcC------------------
Confidence 46688888774333221111 12255678889999999999888765 6666666543
Q ss_pred CCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe--CCeEEEEEccC-ceeEEE--ECCCCCC----------eEE
Q 001352 785 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMT-FKTILT--IMPPSPT----------ATS 849 (1093)
Q Consensus 785 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~--dg~i~iwd~~~-~~~~~~--~~~~~~~----------i~~ 849 (1093)
.+|.......... ...+...++++++|++|+++. .|.|.++-+.. |..... ...|.+. +..
T Consensus 74 --~~G~Lt~ln~~~~--~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~ 149 (346)
T COG2706 74 --DDGRLTFLNRQTL--PGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHS 149 (346)
T ss_pred --CCCeEEEeecccc--CCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccce
Confidence 3333222222221 233337899999999999997 48999999865 433221 1123333 788
Q ss_pred EEEcCCCCCEEEEEeCC-CeEEEEEcCCcceeeecc---cccCCeEEEEEeCCCCEEEEEeC-CCcEEEEeCCC--Ccee
Q 001352 850 LAFNPHDNNVIAIGMDD-STILIYNARSSEVISKLE---GHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDG--WGIQ 922 (1093)
Q Consensus 850 l~~s~~d~~~lasg~~d-g~i~iwd~~~~~~~~~l~---~h~~~V~~l~~s~dg~~l~s~s~-dg~i~iwd~~~--~~~~ 922 (1093)
..+.| ++++|++.+-. -.|.+|++..|++...-. .-...-+.|+|+|++++.....+ +++|.+|..+. ++..
T Consensus 150 a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~ 228 (346)
T COG2706 150 ANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFE 228 (346)
T ss_pred eeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEE
Confidence 89999 89888876532 379999999876532211 23445688999999999877665 89999999987 4544
Q ss_pred eeeeeecCCCcccCCCCceEEEEccCCCEEEEEeC--CeEEEEEcCC--cce-eeeeecCCCCCEEEEEEccCCCEEEEE
Q 001352 923 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE--THLAIYEAEE--LTC-LKQWFPISSVPISQATFSCDCRMVFTS 997 (1093)
Q Consensus 923 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d--~~i~vwd~~~--~~~-~~~~~~~h~~~v~~~~fs~dg~~l~t~ 997 (1093)
..+.+..++....-..+..++.++|||++|.++.. ..|.++.+.. ++. .......+........|+++|++|+++
T Consensus 229 ~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa 308 (346)
T COG2706 229 ELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAA 308 (346)
T ss_pred EeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEE
Confidence 44444444444333356888999999999999754 3688887653 322 112233345557889999999999999
Q ss_pred eCCC-cEEEEEcC--CCce
Q 001352 998 FVDG-TLSIHEAS--NLEV 1013 (1093)
Q Consensus 998 ~~dg-~v~vwd~~--~~~~ 1013 (1093)
..++ .|.+|..+ +|++
T Consensus 309 ~q~sd~i~vf~~d~~TG~L 327 (346)
T COG2706 309 NQKSDNITVFERDKETGRL 327 (346)
T ss_pred ccCCCcEEEEEEcCCCceE
Confidence 8764 57777654 4444
No 248
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.45 E-value=4.5e-10 Score=119.19 Aligned_cols=204 Identities=11% Similarity=0.099 Sum_probs=131.9
Q ss_pred EEEEccCCCEEEEEe---CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC-ccee-e-
Q 001352 808 CFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVI-S- 881 (1093)
Q Consensus 808 ~l~~s~dg~~la~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~-~~~~-~- 881 (1093)
.++++|||+++.+.. ++.|.+.|+.+++.+.++.... ...-...++ +. .+ +.+.||......+.+ |+.. .
T Consensus 109 ~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e-~~-~~-~~~~Dg~~~~v~~d~~g~~~~~~ 184 (352)
T TIGR02658 109 MTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAN-DT-FF-MHCRDGSLAKVGYGTKGNPKIKP 184 (352)
T ss_pred eEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecC-Cc-cE-EEeecCceEEEEecCCCceEEee
Confidence 568899999888775 5789999999999998887533 222223322 22 22 233455444433322 2211 1
Q ss_pred --ecccccCCe-EEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcc----cCCCCceEEEEccCCCEEE
Q 001352 882 --KLEGHSKRV-TGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM----TLAPSETHIQFHKDQTRFL 953 (1093)
Q Consensus 882 --~l~~h~~~V-~~l~~s~-dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~s~dg~~l~ 953 (1093)
.+.+-..++ ..-.|++ ||+++..... |.|.+-|+.+.+......+....... -..+...-++++|+++.+.
T Consensus 185 ~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly 263 (352)
T TIGR02658 185 TEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY 263 (352)
T ss_pred eeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence 111100000 0014566 8888777666 99999998765544433333321110 0113455699999999988
Q ss_pred EEe---C--------CeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCC-EEEEEe-CCCcEEEEEcCCCceEEEec
Q 001352 954 LVH---E--------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRIL 1018 (1093)
Q Consensus 954 ~~~---d--------~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~-~l~t~~-~dg~v~vwd~~~~~~~~~~~ 1018 (1093)
+.. . +.|.++|+.+++.+..+..+ ..+..++|||||+ +|++.. .++.|.+.|+.+++.+.++.
T Consensus 264 V~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG--~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 264 LLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG--HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred EEecCCccccccCCCCEEEEEECCCCeEEEEEeCC--CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 732 1 57999999999999987765 4899999999999 777665 57889999999999998884
No 249
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=3.3e-11 Score=126.62 Aligned_cols=320 Identities=10% Similarity=0.108 Sum_probs=205.1
Q ss_pred CCCCCCcccccccccccCCCccCCchHHHHHhhccCCCCceeeeecCCCceEEEEEcc-----------CCcEEEEecCC
Q 001352 299 PDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTN-----------VGDTGLWDVNS 367 (1093)
Q Consensus 299 ~~fsP~~s~~~~~~~~~~~~~~~~~p~~~~~~l~~h~~~V~~~~~spdg~~llasg~~-----------dg~i~iwd~~~ 367 (1093)
-.|||.++++..........|-.. ....++.+ .|. .|.-+.|||+.+| |+|=+. ...++|||+.+
T Consensus 216 v~wSP~GTYL~t~Hk~GI~lWGG~-~f~r~~RF-~Hp-~Vq~idfSP~EkY-LVT~s~~p~~~~~~d~e~~~l~IWDI~t 291 (698)
T KOG2314|consen 216 VRWSPKGTYLVTFHKQGIALWGGE-SFDRIQRF-YHP-GVQFIDFSPNEKY-LVTYSPEPIIVEEDDNEGQQLIIWDIAT 291 (698)
T ss_pred EEecCCceEEEEEeccceeeecCc-cHHHHHhc-cCC-CceeeecCCccce-EEEecCCccccCcccCCCceEEEEEccc
Confidence 468888887765543321111111 11223333 366 8999999999998 554332 14699999999
Q ss_pred CceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEE
Q 001352 368 GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND 447 (1093)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~ 447 (1093)
|...+.+.. +.+....-.-+.||.|++|+|--..+ +|.||+..+-..+.. ..+ .-..|..
T Consensus 292 G~lkrsF~~----------------~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~-Ksl--ki~gIr~ 351 (698)
T KOG2314|consen 292 GLLKRSFPV----------------IKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDK-KSL--KISGIRD 351 (698)
T ss_pred cchhcceec----------------cCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecc-ccc--CCccccC
Confidence 998875442 11222223347899999999988775 499999876432221 111 2346888
Q ss_pred EEeeCCCCcEEEEEEcC-----CCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEe----------cCCeE
Q 001352 448 LAFSAPCKQISVITCGD-----DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS----------VDGKI 512 (1093)
Q Consensus 448 ~~~s~d~~~l~l~s~~~-----d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~----------~dg~i 512 (1093)
..|+|.+. +|+--.. -..+.+-.+.+++.+++-.-|. |..+.++...+|.+|+.-- .-..+
T Consensus 352 FswsP~~~--llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn--VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~ 427 (698)
T KOG2314|consen 352 FSWSPTSN--LLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN--VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNL 427 (698)
T ss_pred cccCCCcc--eEEEEcccccCCcceEEEEecCccceeeecccee--eeccEEEeccCCcEEEEEEEeeccccccceEeeE
Confidence 99999988 5554332 2357777788888777655443 5555666677787877532 12235
Q ss_pred EEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC-C---eeeeeeecccccCCCeEEEEEc
Q 001352 513 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-G---AIKRTYQGLQLQHNSVSVVHFD 588 (1093)
Q Consensus 513 ~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~-~---~~~~~~~~~~~~~~~v~~v~~~ 588 (1093)
.|+.++..........-...|...+|-|.|..+++.+.. +....+..|.+++ . .++..+.. ...+.+.|+
T Consensus 428 eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~-~~k~tvsfY~~e~~~~~~~lVk~~dk-----~~~N~vfws 501 (698)
T KOG2314|consen 428 EIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGN-TVKNTVSFYAVETNIKKPSLVKELDK-----KFANTVFWS 501 (698)
T ss_pred EEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEcc-ccccceeEEEeecCCCchhhhhhhcc-----cccceEEEc
Confidence 667666665555444455678899999999988876643 2366788888773 2 22333332 457889999
Q ss_pred CCCCEEEEE---eCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEEC------CCeEEEEEcCC
Q 001352 589 TAKDQILAA---GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN------ENRIKILETPE 654 (1093)
Q Consensus 589 ~~~~~l~~~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~------dg~i~iw~~~~ 654 (1093)
|.|++++.+ |..|.+..+|..-.....+- ...+ ...+.+.|.|.|+++++++. |.-.++|+...
T Consensus 502 PkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~-~~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 502 PKGRFVVVAALVSRRGDLEFYDTDYADLKDTA-SPEH-FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred CCCcEEEEEEecccccceEEEecchhhhhhcc-Cccc-cccccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 999998874 56899999998742322221 1122 23578999999999999876 34456666553
No 250
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=9.6e-11 Score=124.06 Aligned_cols=336 Identities=14% Similarity=0.138 Sum_probs=211.8
Q ss_pred CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEE-----eC-----
Q 001352 530 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-----GD----- 599 (1093)
Q Consensus 530 ~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~-----~~----- 599 (1093)
..++...++|++|++++.+. +..+.|++..++..+.+... ..+..+.|+|.+.++.+- ..
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-----~~~v~i~~~~~~~~~lt~~~-----~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~ 103 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-----NQVVKVFEIATLKVVLCVEL-----KKTYDLLFSPKGNYLLTWEPWAIYGPKNAS 103 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-----CCeEEEEEccCCcEEEEecc-----ceeeeeeecccccccccccccccccCCCCC
Confidence 34577899999999999886 44589999888864333332 358899999999988652 12
Q ss_pred CCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCce
Q 001352 600 DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 679 (1093)
Q Consensus 600 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 679 (1093)
.-.+.+|+.+++.....+...... -++..|++|..+.+- -..+.+.+|+..+.+. ...+-+...++.+.++|.+..
T Consensus 104 ~pn~~v~~vet~~~~s~~q~k~Q~--~W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~-~~~kl~~~~i~~f~lSpgp~~ 179 (566)
T KOG2315|consen 104 NPNVLVYNVETGVQRSQIQKKMQN--GWVPQFSIDESLAAR-LVSNEVQFYDLGSFKT-IQHKLSVSGITMLSLSPGPEP 179 (566)
T ss_pred CCceeeeeeccceehhheehhhhc--Ccccccccchhhhhh-hhcceEEEEecCCccc-eeeeeeccceeeEEecCCCCC
Confidence 234779999996666555543332 257888888765433 3357899999987422 233445667777888765322
Q ss_pred eeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeecccee
Q 001352 680 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVH 759 (1093)
Q Consensus 680 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v 759 (1093)
. .+++. ..-..+.-..+++|........... ........+ =..+.|.+-|.-|++....
T Consensus 180 ~-------~vAvy--------vPe~kGaPa~vri~~~~~~~~~~~~--a~ksFFkad-kvqm~WN~~gt~LLvLast--- 238 (566)
T KOG2315|consen 180 P-------FVAVY--------VPEKKGAPASVRIYKYPEEGQHQPV--ANKSFFKAD-KVQMKWNKLGTALLVLAST--- 238 (566)
T ss_pred c-------eEEEE--------ccCCCCCCcEEEEeccccccccchh--hhccccccc-eeEEEeccCCceEEEEEEE---
Confidence 1 11110 0112344567888886522221111 100001112 2345677766655443321
Q ss_pred EEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe---CCeEEEEEccCcee
Q 001352 760 LMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFKT 836 (1093)
Q Consensus 760 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~---dg~i~iwd~~~~~~ 836 (1093)
|++....+ .-...++.+.++....+.. .+ ...++|.++.|+|+|+-+++.. -..+.|+|+. +..
T Consensus 239 ---dVDktn~S----YYGEq~Lyll~t~g~s~~V--~L---~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~ 305 (566)
T KOG2315|consen 239 ---DVDKTNAS----YYGEQTLYLLATQGESVSV--PL---LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKP 305 (566)
T ss_pred ---eecCCCcc----ccccceEEEEEecCceEEE--ec---CCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCE
Confidence 01110000 0011223333444222222 22 2578999999999998888776 3789999986 555
Q ss_pred EEEECCCCCCeEEEEEcCCCCCEEEEEeCC---CeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeC------
Q 001352 837 ILTIMPPSPTATSLAFNPHDNNVIAIGMDD---STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG------ 907 (1093)
Q Consensus 837 ~~~~~~~~~~i~~l~~s~~d~~~lasg~~d---g~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~------ 907 (1093)
+..+ ..++-.++-|+| .|++|+.++-+ |.+.|||+.+.+++..+..-.. +-+.|+|||.+++|+..
T Consensus 306 v~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrv 380 (566)
T KOG2315|consen 306 VFDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRV 380 (566)
T ss_pred eEeC--CCCCccceEECC-CCCEEEEeecCCCCCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEeccccEEe
Confidence 5555 466778899999 88888887765 7999999999999888875443 45799999999998865
Q ss_pred CCcEEEEeCCC
Q 001352 908 DAQIFVWDVDG 918 (1093)
Q Consensus 908 dg~i~iwd~~~ 918 (1093)
|+.++||+..+
T Consensus 381 dNg~KiwhytG 391 (566)
T KOG2315|consen 381 DNGIKIWHYTG 391 (566)
T ss_pred cCCeEEEEecC
Confidence 67799999987
No 251
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=9.4e-11 Score=123.26 Aligned_cols=328 Identities=13% Similarity=0.168 Sum_probs=201.7
Q ss_pred ceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEe-----------CC
Q 001352 532 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-----------DD 600 (1093)
Q Consensus 532 ~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-----------~d 600 (1093)
.-+-+.|||.|.+|++-...| |.+|--.+-..++.|.. ..|.-+.|||+.+||++-+ +.
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-----I~lWGG~~f~r~~RF~H-----p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~ 281 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-----IALWGGESFDRIQRFYH-----PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEG 281 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-----eeeecCccHHHHHhccC-----CCceeeecCCccceEEEecCCccccCcccCCC
Confidence 346789999999999987533 89998777777766654 3588999999999999854 22
Q ss_pred CcEEEEECCCCceEEEEecCCCC-CCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCce
Q 001352 601 HVIKIWDMNKVQLLTTIDAGGGL-PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 679 (1093)
Q Consensus 601 g~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 679 (1093)
..++|||+.+|.....+...... ..-.-+.||.|++++|.... .+|.||+...-.++.....
T Consensus 282 ~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Ksl---------------- 344 (698)
T KOG2314|consen 282 QQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSL---------------- 344 (698)
T ss_pred ceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeeccccc----------------
Confidence 57999999999999888763222 22345789999999998776 5788887664322211110
Q ss_pred eeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeecccee
Q 001352 680 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVH 759 (1093)
Q Consensus 680 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v 759 (1093)
.-..|....|+|.+..|+.-+..
T Consensus 345 ------------------------------------------------------ki~gIr~FswsP~~~llAYwtpe--- 367 (698)
T KOG2314|consen 345 ------------------------------------------------------KISGIRDFSWSPTSNLLAYWTPE--- 367 (698)
T ss_pred ------------------------------------------------------CCccccCcccCCCcceEEEEccc---
Confidence 11234445555554433222111
Q ss_pred EEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEE
Q 001352 760 LMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILT 839 (1093)
Q Consensus 760 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~ 839 (1093)
+.. .. .++.+..+.+++.+++
T Consensus 368 ----------------------------~~~-----------~p--------------------arvtL~evPs~~~iRt 388 (698)
T KOG2314|consen 368 ----------------------------TNN-----------IP--------------------ARVTLMEVPSKREIRT 388 (698)
T ss_pred ----------------------------ccC-----------Cc--------------------ceEEEEecCccceeee
Confidence 000 00 1233444444444444
Q ss_pred ECCCCCCeEEEEEcCCCCCEEEEEe----------CCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeC--
Q 001352 840 IMPPSPTATSLAFNPHDNNVIAIGM----------DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG-- 907 (1093)
Q Consensus 840 ~~~~~~~i~~l~~s~~d~~~lasg~----------~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~-- 907 (1093)
-.-+.-.-..+-|-. +|.+|+.-- .=..+.|+.+.........-.-...|...+|-|.|+.+++.+.
T Consensus 389 ~nlfnVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~ 467 (698)
T KOG2314|consen 389 KNLFNVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNT 467 (698)
T ss_pred ccceeeeccEEEecc-CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccc
Confidence 333332223344554 555555421 1124556666543322111224567889999999998877654
Q ss_pred -CCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE----eCCeEEEEEcCCcceeeeeecCCCCCE
Q 001352 908 -DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV----HETHLAIYEAEELTCLKQWFPISSVPI 982 (1093)
Q Consensus 908 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~----~d~~i~vwd~~~~~~~~~~~~~h~~~v 982 (1093)
..++.+|.+.+.. .....+..++.. ....+.|||.|++++++ ..|.+..+|+.-..+...-...| ...
T Consensus 468 ~k~tvsfY~~e~~~-~~~~lVk~~dk~-----~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~a 540 (698)
T KOG2314|consen 468 VKNTVSFYAVETNI-KKPSLVKELDKK-----FANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FAA 540 (698)
T ss_pred cccceeEEEeecCC-Cchhhhhhhccc-----ccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc-ccc
Confidence 3568999888522 222344444332 36789999999999873 56889999987544433322333 345
Q ss_pred EEEEEccCCCEEEEEeCCC------cEEEEEcCC
Q 001352 983 SQATFSCDCRMVFTSFVDG------TLSIHEASN 1010 (1093)
Q Consensus 983 ~~~~fs~dg~~l~t~~~dg------~v~vwd~~~ 1010 (1093)
+.+.|.|.|+|++|+++-. --++|+...
T Consensus 541 t~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 541 TEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred ccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 6789999999999998643 345565543
No 252
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=1.1e-11 Score=141.67 Aligned_cols=228 Identities=14% Similarity=0.103 Sum_probs=150.2
Q ss_pred HHHHhhccCCCCceeeeecCCCceEEEEEc--cCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEE
Q 001352 326 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 403 (1093)
Q Consensus 326 ~~~~~l~~h~~~V~~~~~spdg~~llasg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 403 (1093)
...+.+..|...+.+.+|||||++|+.+.. .+..|.+||+.+|+... +..+.+.+.+.
T Consensus 192 ~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~--------------------l~~~~g~~~~~ 251 (435)
T PRK05137 192 ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL--------------------VGNFPGMTFAP 251 (435)
T ss_pred CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE--------------------eecCCCcccCc
Confidence 334556678889999999999997544432 24689999999887543 33456678889
Q ss_pred EECCCCCEEEEE-EcCC--EEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEc-CCC--cEEEEECCCCc
Q 001352 404 VWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDK--TIKVWDAVTGS 477 (1093)
Q Consensus 404 ~~s~dg~~las~-~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~-~d~--~i~vwd~~~~~ 477 (1093)
+|||||+.|+.. +.++ .|.+||+.+++.. .+..+.......+|+|||+. ++..+ .++ .|.+||+.+++
T Consensus 252 ~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~Lt~~~~~~~~~~~spDG~~--i~f~s~~~g~~~Iy~~d~~g~~ 325 (435)
T PRK05137 252 RFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT----RLTDSPAIDTSPSYSPDGSQ--IVFESDRSGSPQLYVMNADGSN 325 (435)
T ss_pred EECCCCCEEEEEEecCCCceEEEEECCCCceE----EccCCCCccCceeEcCCCCE--EEEEECCCCCCeEEEEECCCCC
Confidence 999999988754 4444 4778888887532 35556666778999999995 44443 333 68888977665
Q ss_pred eeEEeecCCCCeEEeeecccCCccEEEEEecC---CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCC
Q 001352 478 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 554 (1093)
Q Consensus 478 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~ 554 (1093)
. +.+..+...+....|+ +||+.|+..+.+ ..|.+||+...... .+. ....+....|+|||+.|+..+.....
T Consensus 326 ~-~~lt~~~~~~~~~~~S--pdG~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt-~~~~~~~p~~spDG~~i~~~~~~~~~ 400 (435)
T PRK05137 326 P-RRISFGGGRYSTPVWS--PRGDLIAFTKQGGGQFSIGVMKPDGSGER-ILT-SGFLVEGPTWAPNGRVIMFFRQTPGS 400 (435)
T ss_pred e-EEeecCCCcccCeEEC--CCCCEEEEEEcCCCceEEEEEECCCCceE-ecc-CCCCCCCCeECCCCCEEEEEEccCCC
Confidence 4 3443344455566674 566777776543 35778887554432 222 22356778999999999877653322
Q ss_pred c--eeEEEEeCCCCeeeeeeecccccCCCeEEEEEcC
Q 001352 555 E--SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 589 (1093)
Q Consensus 555 ~--~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~ 589 (1093)
. ..++++|+..+.. +.+.. . +.+...+|+|
T Consensus 401 ~~~~~L~~~dl~g~~~-~~l~~-~---~~~~~p~Wsp 432 (435)
T PRK05137 401 GGAPKLYTVDLTGRNE-REVPT-P---GDASDPAWSP 432 (435)
T ss_pred CCcceEEEEECCCCce-EEccC-C---CCccCcccCC
Confidence 1 4688889876654 33332 2 3355566665
No 253
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=5e-11 Score=125.83 Aligned_cols=284 Identities=16% Similarity=0.185 Sum_probs=190.0
Q ss_pred cccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCC-CCeEEeeecccCCccEEEEEecCCeEEEEEcC
Q 001352 440 AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG-APVYSLCPHAKENIHFIFSISVDGKIKAWLYD 518 (1093)
Q Consensus 440 ~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~ 518 (1093)
+|...-+.+..+|||++ +++||...-.|++||+..-... |..|. ..+..+.+. +.|-..++.-..|.+|.+...-
T Consensus 49 e~p~ast~ik~s~DGqY-~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiL-sDD~SK~v~L~~DR~IefHak~ 124 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQY-LLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEIL-SDDYSKSVFLQNDRTIEFHAKY 124 (703)
T ss_pred CCccccceeEecCCCcE-EEEecccCCceEEEEcccceee--eeecccccceeEEEe-ccchhhheEeecCceeeehhhc
Confidence 46777889999999997 7888999999999998765543 33332 223222221 2233344445556665543211
Q ss_pred CCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEe
Q 001352 519 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG 598 (1093)
Q Consensus 519 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~ 598 (1093)
+.-..... ......++++.-..-|++++.+ ..|+-+++..|..+..+.... +.+++|..++....|++|+
T Consensus 125 --G~hy~~RI-P~~GRDm~y~~~scDly~~gsg----~evYRlNLEqGrfL~P~~~~~---~~lN~v~in~~hgLla~Gt 194 (703)
T KOG2321|consen 125 --GRHYRTRI-PKFGRDMKYHKPSCDLYLVGSG----SEVYRLNLEQGRFLNPFETDS---GELNVVSINEEHGLLACGT 194 (703)
T ss_pred --Ceeeeeec-CcCCccccccCCCccEEEeecC----cceEEEEcccccccccccccc---ccceeeeecCccceEEecc
Confidence 11111111 1122445554433333333332 239999999999999888776 8899999999999999999
Q ss_pred CCCcEEEEECCCCceEEEEecCCC---------CCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeec-ccccccc
Q 001352 599 DDHVIKIWDMNKVQLLTTIDAGGG---------LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA-GVLSDNL 668 (1093)
Q Consensus 599 ~dg~i~iwd~~~~~~~~~~~~~~~---------~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~i 668 (1093)
.+|.|..||.++...+..+....+ .+.|+++.|+.+|-.+++|+.+|.+.|||+...+++... .+..-+|
T Consensus 195 ~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi 274 (703)
T KOG2321|consen 195 EDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPI 274 (703)
T ss_pred cCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccce
Confidence 999999999998887776654322 345899999999999999999999999999988665433 3444456
Q ss_pred eeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCc
Q 001352 669 RKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ 748 (1093)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~ 748 (1093)
..+.|.+. -+++.+++. ....+++||-..+.+..... ....+..+++-|++-
T Consensus 275 ~~l~~~~~--------------------~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiE-------pt~~lND~C~~p~sG 326 (703)
T KOG2321|consen 275 KKLDWQDT--------------------DQQNKVVSM-DKRILKIWDECTGKPMASIE-------PTSDLNDFCFVPGSG 326 (703)
T ss_pred eeeccccc--------------------CCCceEEec-chHHhhhcccccCCceeecc-------ccCCcCceeeecCCc
Confidence 65655431 123334433 34789999987666543322 345688899999999
Q ss_pred eEEEeeccceeEEeeec
Q 001352 749 AIFALASNGVHLMWRWP 765 (1093)
Q Consensus 749 ~l~~~~~dg~v~vw~~~ 765 (1093)
.++++-.++.+..|=++
T Consensus 327 m~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 327 MFFTANESSKMHTYYIP 343 (703)
T ss_pred eEEEecCCCcceeEEcc
Confidence 88888888766665544
No 254
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.40 E-value=1.6e-09 Score=109.70 Aligned_cols=253 Identities=13% Similarity=0.183 Sum_probs=175.2
Q ss_pred CCCCeeEEEEccCCCEEEEEe----CCeEEEEEccC--ceeE--EEECCCCCCeEEEEEcCCCCCEEEEEeC-CCeEEEE
Q 001352 802 SQEAVPCFALSKNDAYLFSAS----GGVISLYIVMT--FKTI--LTIMPPSPTATSLAFNPHDNNVIAIGMD-DSTILIY 872 (1093)
Q Consensus 802 ~~~~v~~l~~s~dg~~la~~~----dg~i~iwd~~~--~~~~--~~~~~~~~~i~~l~~s~~d~~~lasg~~-dg~i~iw 872 (1093)
....++-++++|+++.|.++. .|.|..|.+.. |+.. ........+-+.+++++ ++++|+++.. -|.|.++
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVSVY 116 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEEEE
Confidence 566778899999999888875 36788887764 4432 22222334448899999 8999988875 4799999
Q ss_pred EcCC-cceee--ecccccCC----------eEEEEEeCCCCEEEEEe--CCCcEEEEeCCCCceeeeeeeecCCCcccCC
Q 001352 873 NARS-SEVIS--KLEGHSKR----------VTGLVFSDALNILVSSG--GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 937 (1093)
Q Consensus 873 d~~~-~~~~~--~l~~h~~~----------V~~l~~s~dg~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 937 (1093)
-++. |.+.. ....|.+. +.+..|.|++++|++.+ .|+ |.+|+++.+............|
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dr-i~~y~~~dg~L~~~~~~~v~~G----- 190 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDR-IFLYDLDDGKLTPADPAEVKPG----- 190 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCce-EEEEEcccCccccccccccCCC-----
Confidence 9965 43321 22235555 88899999999999874 465 9999999877655444444332
Q ss_pred CCceEEEEccCCCEEEEE--eCCeEEEEEcCCc-ceeeeeec------C--CCCCEEEEEEccCCCEEEEEeC-CCcEEE
Q 001352 938 PSETHIQFHKDQTRFLLV--HETHLAIYEAEEL-TCLKQWFP------I--SSVPISQATFSCDCRMVFTSFV-DGTLSI 1005 (1093)
Q Consensus 938 ~~v~~~~~s~dg~~l~~~--~d~~i~vwd~~~~-~~~~~~~~------~--h~~~v~~~~fs~dg~~l~t~~~-dg~v~v 1005 (1093)
.....++|+|++++..+. -+++|.+|..... ..+..+.. . -......+..++||++|.++.. ...|.+
T Consensus 191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~ 270 (346)
T COG2706 191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV 270 (346)
T ss_pred CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence 457899999999998774 5689999998763 22222111 1 1557778999999999997643 236888
Q ss_pred EEcCCCce-EEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCC-cEEEEecCCCCCCcc
Q 001352 1006 HEASNLEV-QCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG-EVYVIEPNEPGDTWA 1069 (1093)
Q Consensus 1006 wd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg-~v~~w~~~~~~~~~~ 1069 (1093)
|.+....- +.... +.+ .....|..+.++| ++++|+++.+++ .|.+|.+....+++.
T Consensus 271 f~V~~~~g~L~~~~---~~~----teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 271 FSVDPDGGKLELVG---ITP----TEGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKETGRLT 328 (346)
T ss_pred EEEcCCCCEEEEEE---Eec----cCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCCceEE
Confidence 87765422 22222 111 2245677899999 578888887765 799999987766553
No 255
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.40 E-value=7.6e-10 Score=117.50 Aligned_cols=269 Identities=14% Similarity=0.144 Sum_probs=170.1
Q ss_pred CcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEc----------CCEEEEEEcc
Q 001352 358 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS----------KHIVQLYAYH 427 (1093)
Q Consensus 358 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~----------d~~i~iwd~~ 427 (1093)
++|.+.|..+++.+..... | ..+ ..+ +||||+.|+++.. +..|.+||..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~------------------G-~~P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~ 85 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDG------------------G-FLP-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ 85 (352)
T ss_pred ceEEEEECCCCEEEEEEEc------------------c-CCC-cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECc
Confidence 8999999999988865321 1 111 124 9999999988855 6789999999
Q ss_pred CCCcccceEEecc--c---cccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccE
Q 001352 428 GGSDARQQLEIDA--H---VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHF 502 (1093)
Q Consensus 428 ~~~~~~~~~~~~~--h---~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 502 (1093)
+.+.+..+. +.. + ...-..++++|||+.+++.--+.+..|-+.|+.+++.+.++..... ..-.. ..+..
T Consensus 86 t~~~~~~i~-~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~-~~vy~---t~e~~- 159 (352)
T TIGR02658 86 THLPIADIE-LPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC-YHIFP---TANDT- 159 (352)
T ss_pred cCcEEeEEc-cCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC-cEEEE---ecCCc-
Confidence 988765432 111 1 2233478999999953333334588999999999999998864221 11111 11111
Q ss_pred EEEEecCCeEEEEEcCCCCceE-----EecCCCCce-EEEEEcc-CCCEEEEEecCCCCceeEEEEeCCCC-----eeee
Q 001352 503 IFSISVDGKIKAWLYDSLGARV-----DYDAPGLGC-TRMAYSA-NGRRLFSCGTSKEGESFLVEWNESEG-----AIKR 570 (1093)
Q Consensus 503 l~s~~~dg~i~vwd~~~~~~~~-----~~~~~~~~v-~~~~~s~-d~~~l~~~~~~~~~~~~i~iwd~~~~-----~~~~ 570 (1093)
...-+.||......++...... .+......+ ..-.|++ +|+++.+.. ++.|++.|+... ....
T Consensus 160 ~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~-----eG~V~~id~~~~~~~~~~~~~ 234 (352)
T TIGR02658 160 FFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTY-----TGKIFQIDLSSGDAKFLPAIE 234 (352)
T ss_pred cEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEec-----CCeEEEEecCCCcceecceee
Confidence 2233445554444333322211 111100000 0014455 888887765 367999995433 2232
Q ss_pred eeeccc----ccCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCC
Q 001352 571 TYQGLQ----LQHNSVSVVHFDTAKDQILAAG----------DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT 636 (1093)
Q Consensus 571 ~~~~~~----~~~~~v~~v~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 636 (1093)
.+.... ...+.+.-++++++++++++.. ..+.|.++|..+++.+..+.... .+..++++||++
T Consensus 235 ~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~---~~~~iavS~Dgk 311 (352)
T TIGR02658 235 AFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH---EIDSINVSQDAK 311 (352)
T ss_pred eccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC---ceeeEEECCCCC
Confidence 222111 0123344599999999988843 22579999999999999988653 478999999999
Q ss_pred -EEEEEE-CCCeEEEEEcCCCceeeec
Q 001352 637 -LLAVIA-NENRIKILETPESNSVDAA 661 (1093)
Q Consensus 637 -~l~~~~-~dg~i~iw~~~~~~~~~~~ 661 (1093)
+|++.. .++.|.++|..+.+.+..+
T Consensus 312 p~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 312 PLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred eEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 777666 5788999999999888776
No 256
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.39 E-value=5e-11 Score=118.12 Aligned_cols=340 Identities=13% Similarity=0.168 Sum_probs=203.9
Q ss_pred eeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEE-CCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCC
Q 001352 567 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD-MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 645 (1093)
Q Consensus 567 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 645 (1093)
..++.++|+. +.++....-|..+.+++.+.|.+++||- .+.++.-..+.... ...+.++.+.++.+.|++|-.+|
T Consensus 15 ~ll~~~eG~~---d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~m-P~~~~~~~y~~e~~~L~vg~~ng 90 (404)
T KOG1409|consen 15 ELLSKIEGSQ---DDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYM-PSPCSAMEYVSESRRLYVGQDNG 90 (404)
T ss_pred hhhhhhcCch---hhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhC-CCCceEeeeeccceEEEEEEecc
Confidence 3456677776 7777777788888999999999999995 44455444443322 34688999999999999999999
Q ss_pred eEEEEEcCCC----ceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccC
Q 001352 646 RIKILETPES----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARP 721 (1093)
Q Consensus 646 ~i~iw~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~ 721 (1093)
++.-+.+... ...+....|...+..+-|+- ...++++.+.|..+. |.
T Consensus 91 tvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~----------------------~~e~V~s~~~dk~~~-~h------ 141 (404)
T KOG1409|consen 91 TVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSL----------------------THEWVLSTGKDKQFA-WH------ 141 (404)
T ss_pred eEEEEEhhhhhhhcchhhhhhhhhcceeeEEecC----------------------CceeEEEeccccceE-EE------
Confidence 9988876532 33344445555555555542 223333333322210 10
Q ss_pred ccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCC
Q 001352 722 SECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSN 801 (1093)
Q Consensus 722 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1093)
++ ..|. .+--|. +.
T Consensus 142 --------------------c~-e~~~---------~lg~Y~-----------------------------~~------- 155 (404)
T KOG1409|consen 142 --------------------CT-ESGN---------RLGGYN-----------------------------FE------- 155 (404)
T ss_pred --------------------ee-ccCC---------cccceE-----------------------------ee-------
Confidence 00 0000 000000 00
Q ss_pred CCCCeeEEEEccCCCEEEEEe-CCeEEEEE--ccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcc
Q 001352 802 SQEAVPCFALSKNDAYLFSAS-GGVISLYI--VMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 878 (1093)
Q Consensus 802 ~~~~v~~l~~s~dg~~la~~~-dg~i~iwd--~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~ 878 (1093)
...+++.+.-. +...|. .|.|.+-. ......+.++.+|.+.+++++|.| ..++|.+|..|..+.+||+...+
T Consensus 156 --~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~ 230 (404)
T KOG1409|consen 156 --TPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRK 230 (404)
T ss_pred --ccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCc
Confidence 00000000000 122222 23333332 234567788999999999999999 88999999999999999998654
Q ss_pred e-eeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecC-------------------------CC
Q 001352 879 V-ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP-------------------------DG 932 (1093)
Q Consensus 879 ~-~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-------------------------~~ 932 (1093)
- ...+.+|.+.|..+...+--+.|.+++.||.|.+|+.+........-+..- ..
T Consensus 231 g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h 310 (404)
T KOG1409|consen 231 GTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQH 310 (404)
T ss_pred ceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhh
Confidence 3 367789999999999988889999999999999999986443321110000 00
Q ss_pred cc-cCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcce----eeeeecCC--CCCEEEEEEccCCCEEEEEeCCCcEEE
Q 001352 933 VM-TLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTC----LKQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSI 1005 (1093)
Q Consensus 933 ~~-~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~----~~~~~~~h--~~~v~~~~fs~dg~~l~t~~~dg~v~v 1005 (1093)
|- ..+..+-..+-|.-..+...+.+-.+++-|.-.... ...+...| ...|+.+.+-.+-.+|+|+|.|+.|.|
T Consensus 311 ~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~i 390 (404)
T KOG1409|consen 311 HCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKI 390 (404)
T ss_pred hhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEE
Confidence 00 000011111112222222224444455554321110 01112223 457899999999899999999999999
Q ss_pred EEcCC
Q 001352 1006 HEASN 1010 (1093)
Q Consensus 1006 wd~~~ 1010 (1093)
||+.+
T Consensus 391 wd~~~ 395 (404)
T KOG1409|consen 391 WDVRS 395 (404)
T ss_pred Eechh
Confidence 99975
No 257
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.38 E-value=5.5e-11 Score=117.68 Aligned_cols=155 Identities=12% Similarity=0.185 Sum_probs=108.7
Q ss_pred EEEEEcCCCCCEEEEEeC----------CCeEEEEEcCC-cceeeeccc-ccCCeEEEEEeCCCCEEEEE--eCCCcEEE
Q 001352 848 TSLAFNPHDNNVIAIGMD----------DSTILIYNARS-SEVISKLEG-HSKRVTGLVFSDALNILVSS--GGDAQIFV 913 (1093)
Q Consensus 848 ~~l~~s~~d~~~lasg~~----------dg~i~iwd~~~-~~~~~~l~~-h~~~V~~l~~s~dg~~l~s~--s~dg~i~i 913 (1093)
..+.|+| .|.+|++-.. -|...+|.++. +..+..+.- ..++|.+++|+|+|+.+|.. ..++.|.+
T Consensus 9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 4678888 6766665333 13455555532 233344432 44579999999999987654 35779999
Q ss_pred EeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEe----CCeEEEEEcCCcceeeeeecCCCCCEEEEEEcc
Q 001352 914 WDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----ETHLAIYEAEELTCLKQWFPISSVPISQATFSC 989 (1093)
Q Consensus 914 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~----d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~ 989 (1093)
||++.. .+..... ..+..+.|||+|++|+++. .|.+.+||+.+.+.+.... | ..++.++|||
T Consensus 88 yd~~~~------~i~~~~~-----~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~-~~~t~~~WsP 153 (194)
T PF08662_consen 88 YDVKGK------KIFSFGT-----QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--H-SDATDVEWSP 153 (194)
T ss_pred EcCccc------EeEeecC-----CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc--c-CcEEEEEEcC
Confidence 999732 2222221 2467899999999999842 4679999999888876632 3 3578999999
Q ss_pred CCCEEEEEeC------CCcEEEEEcCCCceEEEec
Q 001352 990 DCRMVFTSFV------DGTLSIHEASNLEVQCRIL 1018 (1093)
Q Consensus 990 dg~~l~t~~~------dg~v~vwd~~~~~~~~~~~ 1018 (1093)
||++|+|++. |..++||+.. |+++.+..
T Consensus 154 dGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 154 DGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred CCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 9999999875 6889999985 66665543
No 258
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=5e-10 Score=126.17 Aligned_cols=243 Identities=12% Similarity=0.077 Sum_probs=150.5
Q ss_pred CcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEE---EEEcC--CEEEEEEccCCCcc
Q 001352 358 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG---VAYSK--HIVQLYAYHGGSDA 432 (1093)
Q Consensus 358 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~la---s~~~d--~~i~iwd~~~~~~~ 432 (1093)
..|.+.|...+.... +......+.+-+|||||+.++ +...+ ..|.+.++.+|+..
T Consensus 165 ~~l~~~d~dG~~~~~--------------------lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~ 224 (428)
T PRK01029 165 GELWSVDYDGQNLRP--------------------LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK 224 (428)
T ss_pred ceEEEEcCCCCCceE--------------------cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce
Confidence 367777877665432 444556677889999998633 33333 35888898887633
Q ss_pred cceEEeccccccEEEEEeeCCCCcEEEEEEcC----CCcEEEEECCCC---ceeEEeecCCCCeEEeeecccCCccEEEE
Q 001352 433 RQQLEIDAHVGNVNDLAFSAPCKQISVITCGD----DKTIKVWDAVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFS 505 (1093)
Q Consensus 433 ~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~----d~~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s 505 (1093)
+ +....+.....+|||||+++ +++... +..+.+|++.++ +.......+.......+| ++||+.|+.
T Consensus 225 ~----lt~~~g~~~~p~wSPDG~~L-af~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~w--SPDG~~Laf 297 (428)
T PRK01029 225 K----ILALQGNQLMPTFSPRKKLL-AFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSF--SPDGTRLVF 297 (428)
T ss_pred E----eecCCCCccceEECCCCCEE-EEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEE--CCCCCEEEE
Confidence 2 23344455678999999953 333332 323455777653 333333222233445566 557777766
Q ss_pred Ee-cCCeEEEEEc--CC-CCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCC
Q 001352 506 IS-VDGKIKAWLY--DS-LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS 581 (1093)
Q Consensus 506 ~~-~dg~i~vwd~--~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~ 581 (1093)
.+ .+|...+|.+ .. ......+......+....|+|||+.|+..+.. .+...|.+||+.+++......+ . ..
T Consensus 298 ~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~-~g~~~I~v~dl~~g~~~~Lt~~-~---~~ 372 (428)
T PRK01029 298 VSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVI-KGVRQICVYDLATGRDYQLTTS-P---EN 372 (428)
T ss_pred EECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcC-CCCcEEEEEECCCCCeEEccCC-C---CC
Confidence 55 4676566644 32 22233344444566788999999999987643 2356799999998876544332 2 34
Q ss_pred eEEEEEcCCCCEEEEEeC---CCcEEEEECCCCceEEEEecCCCCCCCceEEEecCC
Q 001352 582 VSVVHFDTAKDQILAAGD---DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 635 (1093)
Q Consensus 582 v~~v~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 635 (1093)
+....|+|||+.|+..+. ...|+++|+.+++........ ..+...+|+|-.
T Consensus 373 ~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~---g~~~~p~Ws~~~ 426 (428)
T PRK01029 373 KESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGS---GEKRFPSWGAFP 426 (428)
T ss_pred ccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC---CcccCceecCCC
Confidence 667899999998876442 356889999887765544322 235667888743
No 259
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.35 E-value=2.8e-10 Score=112.73 Aligned_cols=358 Identities=13% Similarity=0.196 Sum_probs=213.1
Q ss_pred ccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCc-----eeEEeecCC------------CCeEEeeecccCCccEE
Q 001352 441 HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-----RTYSFEGHG------------APVYSLCPHAKENIHFI 503 (1093)
Q Consensus 441 h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~-----~~~~~~~h~------------~~v~~~~~~~~~~~~~l 503 (1093)
....|.++.|..+|. +|+||..+|.|.++.-.... ....++.|. ..|..+.|....+...+
T Consensus 24 eadiis~vef~~~Ge--~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F 101 (433)
T KOG1354|consen 24 EADIISAVEFDHYGE--RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF 101 (433)
T ss_pred hhcceeeEEeecccc--eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence 345789999999999 89999999999999643222 223344443 35777888888888889
Q ss_pred EEEecCCeEEEEEcCCCCceEE-----ecCCCCceEEEEE---ccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecc
Q 001352 504 FSISVDGKIKAWLYDSLGARVD-----YDAPGLGCTRMAY---SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 575 (1093)
Q Consensus 504 ~s~~~dg~i~vwd~~~~~~~~~-----~~~~~~~v~~~~~---s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 575 (1093)
+..+.|.+|++|.+........ .......++++.. .|....+. ..+.+.+..
T Consensus 102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~ve-------------------a~prRv~aN- 161 (433)
T KOG1354|consen 102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVE-------------------ASPRRVYAN- 161 (433)
T ss_pred EEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceee-------------------eeeeeeccc-
Confidence 9999999999998876544331 1111122222221 11111110 112233322
Q ss_pred cccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eEEEEecCC-----CCCCCceEEEec-CCCEEEEEECCCeEE
Q 001352 576 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ-LLTTIDAGG-----GLPENPRICFNK-NGTLLAVIANENRIK 648 (1093)
Q Consensus 576 ~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~-----~~~~v~~v~~s~-~~~~l~~~~~dg~i~ 648 (1093)
.|...|.++.++.|...++++. |=.|.+|+++--. ......... -+.-|++..|+| ..+.++..+..|+|+
T Consensus 162 -aHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr 239 (433)
T KOG1354|consen 162 -AHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR 239 (433)
T ss_pred -cceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence 1237799999999988877764 6679999987432 222222211 112377888999 456778888899999
Q ss_pred EEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccc
Q 001352 649 ILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLL 728 (1093)
Q Consensus 649 iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~ 728 (1093)
+-|++......... +++.
T Consensus 240 LcDmR~~aLCd~hs-------------------------------------------------KlfE------------- 257 (433)
T KOG1354|consen 240 LCDMRQSALCDAHS-------------------------------------------------KLFE------------- 257 (433)
T ss_pred Eeechhhhhhcchh-------------------------------------------------hhhc-------------
Confidence 99988542111000 0000
Q ss_pred cCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeE
Q 001352 729 LPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPC 808 (1093)
Q Consensus 729 ~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 808 (1093)
.|. .|..+.+ . . +--..|..
T Consensus 258 epe------------dp~~rsf------------------------------------------f----s--eiIsSISD 277 (433)
T KOG1354|consen 258 EPE------------DPSSRSF------------------------------------------F----S--EIISSISD 277 (433)
T ss_pred ccc------------CCcchhh------------------------------------------H----H--HHhhhhhc
Confidence 000 0000000 0 0 12345677
Q ss_pred EEEccCCCEEEEEeCCeEEEEEc-cCceeEEEECCCCC------------C---eEEEEEcCCCCCEEEEEeCCCeEEEE
Q 001352 809 FALSKNDAYLFSASGGVISLYIV-MTFKTILTIMPPSP------------T---ATSLAFNPHDNNVIAIGMDDSTILIY 872 (1093)
Q Consensus 809 l~~s~dg~~la~~~dg~i~iwd~-~~~~~~~~~~~~~~------------~---i~~l~~s~~d~~~lasg~~dg~i~iw 872 (1093)
+.|+++|+|+++-+--+|++||+ ...+++.+++.|.. . -..++|+. ++.+++||+....+++|
T Consensus 278 vKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf 356 (433)
T KOG1354|consen 278 VKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVF 356 (433)
T ss_pred eEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-CcceEecccccceEEEe
Confidence 88888888888877788899988 34555555554431 2 24678998 88899999999999999
Q ss_pred EcCCccee-eecccccCC--eEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCC
Q 001352 873 NARSSEVI-SKLEGHSKR--VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ 949 (1093)
Q Consensus 873 d~~~~~~~-~~l~~h~~~--V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 949 (1093)
++..|... .++...... ...+ ..-+.+.+++......+|--. .+-. ..+...+|+|..
T Consensus 357 ~~~~gsk~d~tl~asr~~~~~~~~---~k~~~V~~~g~r~~~~~~vd~------------ldf~----kkilh~aWhp~e 417 (433)
T KOG1354|consen 357 NLARGSKEDFTLEASRKNMKPRKV---LKLRLVSSSGKRKRDEISVDA------------LDFR----KKILHTAWHPKE 417 (433)
T ss_pred cCCCCcceeecccccccCCccccc---ccceeeecCCCccccccccch------------hhhh----hHHHhhccCCcc
Confidence 98766432 333332222 1111 112334444444332222110 0101 146778999999
Q ss_pred CEEEEEeCCeEEEEE
Q 001352 950 TRFLLVHETHLAIYE 964 (1093)
Q Consensus 950 ~~l~~~~d~~i~vwd 964 (1093)
+.+|++.-+.+++|.
T Consensus 418 n~ia~aatnnlyif~ 432 (433)
T KOG1354|consen 418 NSIAVAATNNLYIFQ 432 (433)
T ss_pred ceeeeeecCceEEec
Confidence 999998777777763
No 260
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.34 E-value=7.9e-09 Score=113.79 Aligned_cols=270 Identities=14% Similarity=0.214 Sum_probs=172.5
Q ss_pred CcEEEEec--CCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEc----CCEEEEEEccCC-C
Q 001352 358 GDTGLWDV--NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS----KHIVQLYAYHGG-S 430 (1093)
Q Consensus 358 g~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~----d~~i~iwd~~~~-~ 430 (1093)
+.|.+|++ ++++......+ .-......++++|++++|.++.. ++.|..|++... .
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~------------------~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g 74 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTV------------------AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG 74 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEE------------------EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT
T ss_pred CcEEEEEEcCCCCCceEeeee------------------cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc
Confidence 67888888 55554332111 13356677999999999999876 568999998875 3
Q ss_pred cccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCC-CceeEE---ee----------cCCCCeEEeeecc
Q 001352 431 DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT-GSRTYS---FE----------GHGAPVYSLCPHA 496 (1093)
Q Consensus 431 ~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~-~~~~~~---~~----------~h~~~v~~~~~~~ 496 (1093)
.+...............++++|+++. ++++-..+|+|.++++.. |..... +. .......++.+
T Consensus 75 ~L~~~~~~~~~g~~p~~i~~~~~g~~-l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~-- 151 (345)
T PF10282_consen 75 TLTLLNSVPSGGSSPCHIAVDPDGRF-LYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVF-- 151 (345)
T ss_dssp EEEEEEEEEESSSCEEEEEECTTSSE-EEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE--
T ss_pred eeEEeeeeccCCCCcEEEEEecCCCE-EEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEE--
Confidence 34333333334445678999999994 344445689999999987 443322 21 11234566777
Q ss_pred cCCccEEEEEe-cCCeEEEEEcCCCCc-e---EEe-cCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC--CCee
Q 001352 497 KENIHFIFSIS-VDGKIKAWLYDSLGA-R---VDY-DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES--EGAI 568 (1093)
Q Consensus 497 ~~~~~~l~s~~-~dg~i~vwd~~~~~~-~---~~~-~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~--~~~~ 568 (1093)
+++++++++.. ....|.+|+++.... + ..+ ...+...+.++|+|+++++++... ..+.|.++++. ++..
T Consensus 152 ~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e---~s~~v~v~~~~~~~g~~ 228 (345)
T PF10282_consen 152 SPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNE---LSNTVSVFDYDPSDGSL 228 (345)
T ss_dssp -TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEET---TTTEEEEEEEETTTTEE
T ss_pred CCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecC---CCCcEEEEeecccCCce
Confidence 45666666654 446799999987662 1 122 234557889999999999988764 35567787776 4432
Q ss_pred --eeeeecc---cccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECC--CCce--EEEEecCCCCCCCceEEEecCCCEE
Q 001352 569 --KRTYQGL---QLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMN--KVQL--LTTIDAGGGLPENPRICFNKNGTLL 638 (1093)
Q Consensus 569 --~~~~~~~---~~~~~~v~~v~~~~~~~~l~~~~-~dg~i~iwd~~--~~~~--~~~~~~~~~~~~v~~v~~s~~~~~l 638 (1093)
+...... .........+.++|+|++|+++. ..++|.+|++. ++++ +..+...+. ....++++|+|++|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~--~Pr~~~~s~~g~~l 306 (345)
T PF10282_consen 229 TEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGK--FPRHFAFSPDGRYL 306 (345)
T ss_dssp EEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSS--SEEEEEE-TTSSEE
T ss_pred eEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCC--CccEEEEeCCCCEE
Confidence 2222221 10112578899999999988854 67789999983 3443 333433222 35789999999999
Q ss_pred EEEEC-CCeEEEEEcC
Q 001352 639 AVIAN-ENRIKILETP 653 (1093)
Q Consensus 639 ~~~~~-dg~i~iw~~~ 653 (1093)
+++.. ++.|.+|++.
T Consensus 307 ~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 307 YVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEETTTTEEEEEEEE
T ss_pred EEEecCCCeEEEEEEe
Confidence 98874 6789999774
No 261
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=1.6e-10 Score=130.10 Aligned_cols=233 Identities=11% Similarity=0.041 Sum_probs=144.0
Q ss_pred hhccCCCCceeeeecCCCce--EEEEEccC--CcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEE
Q 001352 330 TLIEGSSSPMSMDFHPVQHT--LLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 405 (1093)
Q Consensus 330 ~l~~h~~~V~~~~~spdg~~--llasg~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 405 (1093)
.|..+...+..-+|||||+. ++++...+ ..|.+.++.+|+... +....+.....+|
T Consensus 179 ~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--------------------lt~~~g~~~~p~w 238 (428)
T PRK01029 179 PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--------------------ILALQGNQLMPTF 238 (428)
T ss_pred EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--------------------eecCCCCccceEE
Confidence 34444556778899999975 33344444 358888988887554 2223445567899
Q ss_pred CCCCCEEEEEEc-----CCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEE--ECCC-Cc
Q 001352 406 SPDGSLLGVAYS-----KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW--DAVT-GS 477 (1093)
Q Consensus 406 s~dg~~las~~~-----d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw--d~~~-~~ 477 (1093)
||||++||..+. +-.+.+|++.++..-.......++.......+|+|||+. ++++...+|...+| ++.. +.
T Consensus 239 SPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~-Laf~s~~~g~~~ly~~~~~~~g~ 317 (428)
T PRK01029 239 SPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTR-LVFVSNKDGRPRIYIMQIDPEGQ 317 (428)
T ss_pred CCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEECccccc
Confidence 999999998753 223445777653211111112223344567899999995 23334456655555 4432 33
Q ss_pred eeEEeecCCCCeEEeeecccCCccEEEEEecC---CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCC
Q 001352 478 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 554 (1093)
Q Consensus 478 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~ 554 (1093)
....+..+...+....|+ +||+.|+..+.+ ..|.+||+.+++...... ....+....|+|||+.|+..... .+
T Consensus 318 ~~~~lt~~~~~~~~p~wS--PDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~~~-~g 393 (428)
T PRK01029 318 SPRLLTKKYRNSSCPAWS--PDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSAGN-SN 393 (428)
T ss_pred ceEEeccCCCCccceeEC--CCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEECC-CC
Confidence 344555455556666774 567777766543 368999998776544332 23456778999999998876543 34
Q ss_pred ceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCC
Q 001352 555 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK 591 (1093)
Q Consensus 555 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~ 591 (1093)
...|+++|+.+++......+ . +.+...+|+|..
T Consensus 394 ~~~L~~vdl~~g~~~~Lt~~-~---g~~~~p~Ws~~~ 426 (428)
T PRK01029 394 ESELYLISLITKKTRKIVIG-S---GEKRFPSWGAFP 426 (428)
T ss_pred CceEEEEECCCCCEEEeecC-C---CcccCceecCCC
Confidence 56799999988876554432 2 445667787753
No 262
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.33 E-value=1.3e-10 Score=117.46 Aligned_cols=117 Identities=13% Similarity=0.173 Sum_probs=103.9
Q ss_pred CCCeeEEEEccC--CCEEEEEe-CCeEEEEEccCc-eeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcc
Q 001352 803 QEAVPCFALSKN--DAYLFSAS-GGVISLYIVMTF-KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 878 (1093)
Q Consensus 803 ~~~v~~l~~s~d--g~~la~~~-dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~ 878 (1093)
.-+++++.|-+. ...+|++. -+.+++||...+ +++..+.-...+++++...| +++++++|..-|.+..+|+.+++
T Consensus 202 PvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~k 280 (412)
T KOG3881|consen 202 PVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGK 280 (412)
T ss_pred eeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC-CCcEEEEecccchhheecccCce
Confidence 345667888887 78888888 599999999876 45677777788999999999 99999999999999999999999
Q ss_pred eeee-cccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc
Q 001352 879 VISK-LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG 920 (1093)
Q Consensus 879 ~~~~-l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~ 920 (1093)
.... +.+-.+.|+++..+|.+++||++|-|+.|||+|+++.+
T Consensus 281 l~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrk 323 (412)
T KOG3881|consen 281 LLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRK 323 (412)
T ss_pred eeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccch
Confidence 8876 88999999999999999999999999999999999854
No 263
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=99.33 E-value=7e-12 Score=119.63 Aligned_cols=168 Identities=22% Similarity=0.268 Sum_probs=126.8
Q ss_pred hhHHHHHHHHHhhhhcChHHHHHHHHHhcCCChh---------HHHHHHHhcCcCHHHHHHHhccCC--CcCCccccchh
Q 001352 4 LNKDLVFLILQFLNEEGFTESAHMLERESRFYFD---------MKFFEDMILDGKWEDVEQYLSSFT--KVDDNRYSTKI 72 (1093)
Q Consensus 4 ~~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~~~---------~~~~~~~i~~G~w~~~~~~l~~~~--~~~~~~~~~~~ 72 (1093)
-++|+-|||+.||-..||.++|..+.+|+|+... ...+|.+|..|+.++|++.+.++. .++.+. .+
T Consensus 25 ~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~---~l 101 (228)
T KOG2659|consen 25 MREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR---EL 101 (228)
T ss_pred chhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch---hH
Confidence 4688999999999999999999999999999761 578899999999999999999872 234332 38
Q ss_pred hhHHHhhhhhhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcccCccccccc-ccccCCChHHHHHHHHHHHhh
Q 001352 73 YFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELL-SKYYGDALSARKNMMLELKQI 151 (1093)
Q Consensus 73 ~~~i~~~~~lEll~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~~~~~~~R~~l~~~l~~~ 151 (1093)
.|.+++|+++||+..+...+|++++|++|.|....++..++.|...|.+-.++..... ..| --....|.++...+...
T Consensus 102 ~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~~-l~~~s~R~kvA~~vN~a 180 (228)
T KOG2659|consen 102 FFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSAE-LLSQSLRQKVASEVNSA 180 (228)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHHH-HHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999888888888887776444322110 000 00134577777777766
Q ss_pred cccCcccccccCCCCCcchHHHHHHHHhHHhh
Q 001352 152 IEANPILQGKLKFPSIKRQRLRRLINQSLNWQ 183 (1093)
Q Consensus 152 ~~~~~~~~~~~~~~~~p~~rL~~ll~qa~~~q 183 (1093)
|-...-. --..+|..||+.-+..|
T Consensus 181 iL~~~~~--------~~~~~l~~llk~~~~~~ 204 (228)
T KOG2659|consen 181 ILASQEH--------ESEPKLPFLLKLISWAQ 204 (228)
T ss_pred HHHHhcc--------cccchHHHHHHHHHHHH
Confidence 5542220 12557888885554444
No 264
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=6.8e-10 Score=127.27 Aligned_cols=237 Identities=14% Similarity=0.101 Sum_probs=150.5
Q ss_pred cEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcC---CEEEEEEccCCCcccce
Q 001352 359 DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQ 435 (1093)
Q Consensus 359 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d---~~i~iwd~~~~~~~~~~ 435 (1093)
.|.++|.+.+.... +..+...+...+|||||++|+..+.+ ..|.+||+.+++...
T Consensus 180 ~l~~~d~~g~~~~~--------------------l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-- 237 (430)
T PRK00178 180 TLQRSDYDGARAVT--------------------LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-- 237 (430)
T ss_pred EEEEECCCCCCceE--------------------EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--
Confidence 47788887654322 34577789999999999999887644 369999999876322
Q ss_pred EEeccccccEEEEEeeCCCCcEEEEEEcCCC--cEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEec-CC--
Q 001352 436 LEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG-- 510 (1093)
Q Consensus 436 ~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg-- 510 (1093)
+....+.+...+|+|||+. ++++.+.++ .|.+||+.+++.. .+..+........|+ +||..++..+. +|
T Consensus 238 --l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~s--pDg~~i~f~s~~~g~~ 311 (430)
T PRK00178 238 --ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWG--KDGRTLYFTSDRGGKP 311 (430)
T ss_pred --ccCCCCCcCCeEECCCCCE-EEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEEC--CCCCEEEEEECCCCCc
Confidence 2233344567899999995 333555555 5888899887654 454455555556664 46666655543 34
Q ss_pred eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCC
Q 001352 511 KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA 590 (1093)
Q Consensus 511 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~ 590 (1093)
.|.++++.+++.... ...........|+|||+.++...... +...|.++|+.+++....... . ......|+|+
T Consensus 312 ~iy~~d~~~g~~~~l-t~~~~~~~~~~~Spdg~~i~~~~~~~-~~~~l~~~dl~tg~~~~lt~~-~----~~~~p~~spd 384 (430)
T PRK00178 312 QIYKVNVNGGRAERV-TFVGNYNARPRLSADGKTLVMVHRQD-GNFHVAAQDLQRGSVRILTDT-S----LDESPSVAPN 384 (430)
T ss_pred eEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEEEEEccC-CceEEEEEECCCCCEEEccCC-C----CCCCceECCC
Confidence 466677766554322 22223334578999999998876432 345699999998865433222 1 1224589999
Q ss_pred CCEEEEEeCC---CcEEEEECCCCceEEEEecCCCCCCCceEEEec
Q 001352 591 KDQILAAGDD---HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 633 (1093)
Q Consensus 591 ~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 633 (1093)
|+.++..+.+ ..+++++... .....+.... ..+...+|+|
T Consensus 385 g~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~~~~--g~~~~p~ws~ 427 (430)
T PRK00178 385 GTMLIYATRQQGRGVLMLVSING-RVRLPLPTAQ--GEVREPSWSP 427 (430)
T ss_pred CCEEEEEEecCCceEEEEEECCC-CceEECcCCC--CCcCCCccCC
Confidence 9999876643 3467777754 3333443322 2355666766
No 265
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=6.8e-10 Score=126.27 Aligned_cols=223 Identities=15% Similarity=0.105 Sum_probs=140.8
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEEcC---CEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCc--
Q 001352 393 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT-- 467 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~dg~~las~~~d---~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~-- 467 (1093)
+..+...+.+.+|||||++|+..+.+ ..|.+||+.+++... +....+.....+|+|||+. ++++.+.++.
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~ 287 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSFPGINGAPRFSPDGKK-LALVLSKDGQPE 287 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeE
Confidence 34467789999999999999987543 268899998875321 2222333457899999996 3345566664
Q ss_pred EEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEec-CCe--EEEEEcCCCCceEEecCCCCceEEEEEccCCCE
Q 001352 468 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 544 (1093)
Q Consensus 468 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~--i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~ 544 (1093)
|.+||+.+++. ..+..+.......+|++ |++.|+..+. ++. |.++|+.+++... +..........+|+|||++
T Consensus 288 Iy~~dl~tg~~-~~lt~~~~~~~~p~wSp--DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~ 363 (448)
T PRK04792 288 IYVVDIATKAL-TRITRHRAIDTEPSWHP--DGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRS 363 (448)
T ss_pred EEEEECCCCCe-EECccCCCCccceEECC--CCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCE
Confidence 77889887764 34444555556667754 6666665543 444 5556666554332 2222223345789999999
Q ss_pred EEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCceEEEEecCC
Q 001352 545 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD-DH--VIKIWDMNKVQLLTTIDAGG 621 (1093)
Q Consensus 545 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~ 621 (1093)
++..+.. .+...|.++|+.+++....... . ......|+|+|+.++..+. +| .+++++. +|.....+....
T Consensus 364 l~~~~~~-~g~~~I~~~dl~~g~~~~lt~~-~----~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~ 436 (448)
T PRK04792 364 MIMVNRT-NGKFNIARQDLETGAMQVLTST-R----LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQ 436 (448)
T ss_pred EEEEEec-CCceEEEEEECCCCCeEEccCC-C----CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCC
Confidence 9887653 2345688889888865432222 1 1123479999998887553 33 3677786 455555555432
Q ss_pred CCCCCceEEEec
Q 001352 622 GLPENPRICFNK 633 (1093)
Q Consensus 622 ~~~~v~~v~~s~ 633 (1093)
..+...+|+|
T Consensus 437 --g~~~~p~Wsp 446 (448)
T PRK04792 437 --GEVKSPAWSP 446 (448)
T ss_pred --CCcCCCccCC
Confidence 2356677776
No 266
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=1.9e-10 Score=131.92 Aligned_cols=226 Identities=13% Similarity=0.093 Sum_probs=142.9
Q ss_pred HhhccCCCCceeeeecCCCceEEEEEccC--CcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEEC
Q 001352 329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 406 (1093)
Q Consensus 329 ~~l~~h~~~V~~~~~spdg~~llasg~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 406 (1093)
+.+..+.+.+...+|||||++|+.+...+ ..|.+||+.+|+... +....+.+.+.+||
T Consensus 192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~~~g~~~~~~~S 251 (430)
T PRK00178 192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITNFEGLNGAPAWS 251 (430)
T ss_pred eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccCCCCCcCCeEEC
Confidence 44556677899999999999755554333 368999999886543 22233445678999
Q ss_pred CCCCEEEEE-EcCC--EEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCC--cEEEEECCCCceeEE
Q 001352 407 PDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYS 481 (1093)
Q Consensus 407 ~dg~~las~-~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~~~~ 481 (1093)
|||++|+.. +.++ .|.+||+.+++.. .+..+........|+|||+. ++++...++ .|.++|+.+++...
T Consensus 252 pDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg~~-i~f~s~~~g~~~iy~~d~~~g~~~~- 325 (430)
T PRK00178 252 PDGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDGRT-LYFTSDRGGKPQIYKVNVNGGRAER- 325 (430)
T ss_pred CCCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEECCCCCEEE-
Confidence 999998854 3444 6888899887532 34455566777899999995 233443343 57778888877543
Q ss_pred eecCCCCeEEeeecccCCccEEEEEecC-C--eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeE
Q 001352 482 FEGHGAPVYSLCPHAKENIHFIFSISVD-G--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 558 (1093)
Q Consensus 482 ~~~h~~~v~~~~~~~~~~~~~l~s~~~d-g--~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i 558 (1093)
+...........| ++|++.++..+.+ + .|.+||+.++........ .......|+|||+.++..+.. .+...|
T Consensus 326 lt~~~~~~~~~~~--Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~~~~~-~g~~~l 400 (430)
T PRK00178 326 VTFVGNYNARPRL--SADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIYATRQ-QGRGVL 400 (430)
T ss_pred eecCCCCccceEE--CCCCCEEEEEEccCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEEEEec-CCceEE
Confidence 2211122233455 4566777766543 3 477888887654332222 222356899999999887653 235678
Q ss_pred EEEeCCCCeeeeeeecccccCCCeEEEEEcC
Q 001352 559 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 589 (1093)
Q Consensus 559 ~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~ 589 (1093)
++++...+ ..+.+.... +.+...+|+|
T Consensus 401 ~~~~~~g~-~~~~l~~~~---g~~~~p~ws~ 427 (430)
T PRK00178 401 MLVSINGR-VRLPLPTAQ---GEVREPSWSP 427 (430)
T ss_pred EEEECCCC-ceEECcCCC---CCcCCCccCC
Confidence 88887543 333443332 4455666765
No 267
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.31 E-value=6.2e-10 Score=127.73 Aligned_cols=210 Identities=15% Similarity=0.075 Sum_probs=138.5
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEEcC---CEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCC--c
Q 001352 393 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--T 467 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~dg~~las~~~d---~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~ 467 (1093)
+..+...+.+.+|||||++||.++.+ ..|++||+.+++.. .+..+.+.+.+++|+|||+. ++++.+.++ .
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~----~~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~ 259 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE----KVASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD 259 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EeecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence 44566789999999999999988644 47999999987532 23345566778999999985 334555444 5
Q ss_pred EEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEec-CC--eEEEEEcCCCCceEEecCCCCceEEEEEccCCCE
Q 001352 468 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 544 (1093)
Q Consensus 468 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~ 544 (1093)
|.+||+.++... .+..+........|+ +|++.|+..+. ++ .|.++++.+.+. ..+...........|+|+|++
T Consensus 260 i~~~d~~~~~~~-~l~~~~~~~~~~~~s--~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~ 335 (417)
T TIGR02800 260 IYVMDLDGKQLT-RLTNGPGIDTEPSWS--PDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDL 335 (417)
T ss_pred EEEEECCCCCEE-ECCCCCCCCCCEEEC--CCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCE
Confidence 889998887643 344454444455664 46777766554 33 577777766543 333334456677899999999
Q ss_pred EEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCceEEEEe
Q 001352 545 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH---VIKIWDMNKVQLLTTID 618 (1093)
Q Consensus 545 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~ 618 (1093)
++.+.... +...|.+||+.++.... +... .......|+|++++|+..+.++ .+++.+. ++.....+.
T Consensus 336 i~~~~~~~-~~~~i~~~d~~~~~~~~-l~~~----~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~ 405 (417)
T TIGR02800 336 IAFVHREG-GGFNIAVMDLDGGGERV-LTDT----GLDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARLP 405 (417)
T ss_pred EEEEEccC-CceEEEEEeCCCCCeEE-ccCC----CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECC
Confidence 99887533 34579999998865432 2221 1234558999999998876554 3555554 344444443
No 268
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.30 E-value=2.4e-10 Score=113.08 Aligned_cols=162 Identities=19% Similarity=0.336 Sum_probs=113.9
Q ss_pred EEEEECCCCCEEEEEEc----------CCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEE
Q 001352 401 NRVVWSPDGSLLGVAYS----------KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 470 (1093)
Q Consensus 401 ~~v~~s~dg~~las~~~----------d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~v 470 (1093)
..+.|+|+|++|++-.. -+...+|.++..........+. ..++|.+++|+|+|+.+.+++|..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~-~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELK-KEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeecc-CCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 45889999999886543 1246666664332222221222 345799999999999755666777889999
Q ss_pred EECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecC---CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEE
Q 001352 471 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 547 (1093)
Q Consensus 471 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 547 (1093)
||++ ++.+..+. ...++.+.|+| +|+++++++.+ |.|.+||.++.+.+.... ...+..++|+|||+++++
T Consensus 88 yd~~-~~~i~~~~--~~~~n~i~wsP--~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~~~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 88 YDVK-GKKIFSFG--TQPRNTISWSP--DGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--HSDATDVEWSPDGRYLAT 160 (194)
T ss_pred EcCc-ccEeEeec--CCCceEEEECC--CCCEEEEEEccCCCcEEEEEECCCCEEeeccc--cCcEEEEEEcCCCCEEEE
Confidence 9986 77777664 56778888854 67899988754 679999999666655543 335789999999999999
Q ss_pred EecC--CCCceeEEEEeCCCCeeeee
Q 001352 548 CGTS--KEGESFLVEWNESEGAIKRT 571 (1093)
Q Consensus 548 ~~~~--~~~~~~i~iwd~~~~~~~~~ 571 (1093)
+... ...++.+.||+.. |+.+..
T Consensus 161 a~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred EEeccceeccccEEEEEec-CeEeEe
Confidence 8753 1235668999974 555444
No 269
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=2.8e-10 Score=129.43 Aligned_cols=226 Identities=15% Similarity=0.110 Sum_probs=140.0
Q ss_pred HhhccCCCCceeeeecCCCceEEEEEccCC--cEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEEC
Q 001352 329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVG--DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 406 (1093)
Q Consensus 329 ~~l~~h~~~V~~~~~spdg~~llasg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 406 (1093)
+.+..+...+.+.+|||||++++.+...++ .|.+||+.+++.... ....+.....+||
T Consensus 211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l--------------------t~~~g~~~~~~wS 270 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV--------------------TSFPGINGAPRFS 270 (448)
T ss_pred eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe--------------------cCCCCCcCCeeEC
Confidence 344556668899999999997555544333 588899988875431 1122334568999
Q ss_pred CCCCEEEEE-EcCC--EEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCC--cEEEEECCCCceeEE
Q 001352 407 PDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYS 481 (1093)
Q Consensus 407 ~dg~~las~-~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~~~~ 481 (1093)
|||+.|+.. +.++ .|.+||+.+++.. .+..+.......+|+|||+. ++++...++ .|.++|+.+++...
T Consensus 271 PDG~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~~dl~~g~~~~- 344 (448)
T PRK04792 271 PDGKKLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYRVNLASGKVSR- 344 (448)
T ss_pred CCCCEEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCCEEE-
Confidence 999988764 4555 4788888876532 34445556778899999995 333444344 46667887776543
Q ss_pred eecCCCCeEEeeecccCCccEEEEEec-CCe--EEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeE
Q 001352 482 FEGHGAPVYSLCPHAKENIHFIFSISV-DGK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 558 (1093)
Q Consensus 482 ~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~--i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i 558 (1093)
+..........+| ++||++|+..+. ++. |.++|+.++.... +... .......|+|||+.++..... .+...+
T Consensus 345 Lt~~g~~~~~~~~--SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~-~g~~~l 419 (448)
T PRK04792 345 LTFEGEQNLGGSI--TPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTY-QGKQVL 419 (448)
T ss_pred EecCCCCCcCeeE--CCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEec-CCceEE
Confidence 2212222233456 456667766554 443 4556766655432 2211 122345899999999887653 345668
Q ss_pred EEEeCCCCeeeeeeecccccCCCeEEEEEcC
Q 001352 559 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 589 (1093)
Q Consensus 559 ~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~ 589 (1093)
++++. +|...+.+.... +.+...+|+|
T Consensus 420 ~~~~~-~G~~~~~l~~~~---g~~~~p~Wsp 446 (448)
T PRK04792 420 AAVSI-DGRFKARLPAGQ---GEVKSPAWSP 446 (448)
T ss_pred EEEEC-CCCceEECcCCC---CCcCCCccCC
Confidence 88887 455555555443 4566677776
No 270
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.28 E-value=5.4e-11 Score=117.92 Aligned_cols=358 Identities=14% Similarity=0.140 Sum_probs=228.8
Q ss_pred ceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceE--EecCCCCceEEEEEccCCCEEEEEecCCCC
Q 001352 477 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV--DYDAPGLGCTRMAYSANGRRLFSCGTSKEG 554 (1093)
Q Consensus 477 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~--~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~ 554 (1093)
..++.++||...++....-+..+ -+++.+.|.++++|--+...+.. .......+++++.+.++.+.|+++-.
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~--gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~---- 88 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEE--GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQD---- 88 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCC--CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEe----
Confidence 34567788998888887766554 59999999999999655444332 23334567899999999999998875
Q ss_pred ceeEEEEeC----CCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEE
Q 001352 555 ESFLVEWNE----SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 630 (1093)
Q Consensus 555 ~~~i~iwd~----~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 630 (1093)
.+.+.-+.+ +.....+.+..|. ..+..+-|+-...++++.+.|..+.---.+.+..+........ ...+.
T Consensus 89 ngtvtefs~sedfnkm~~~r~~~~h~---~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~---~t~~~ 162 (404)
T KOG1409|consen 89 NGTVTEFALSEDFNKMTFLKDYLAHQ---ARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETP---ASALQ 162 (404)
T ss_pred cceEEEEEhhhhhhhcchhhhhhhhh---cceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeecc---CCCCc
Confidence 444665543 3445566677776 8899999998889999999998776544555555433322211 11222
Q ss_pred EecCCCEEEEEECCCeEEEEEcC--CCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeeccc
Q 001352 631 FNKNGTLLAVIANENRIKILETP--ESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 708 (1093)
Q Consensus 631 ~s~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 708 (1093)
+.-. +..+|...|.+.+..+. .-..+..+.+|...+.++.+. +....+.++..|
T Consensus 163 ~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd----------------------~~~~~LfSg~~d 218 (404)
T KOG1409|consen 163 FDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWD----------------------PGQRLLFSGASD 218 (404)
T ss_pred eeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEc----------------------CCCcEEEecccc
Confidence 2221 56667677777776554 446788899999999999997 567778999999
Q ss_pred ccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccc-----cCCcc
Q 001352 709 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTK-----VPPRL 783 (1093)
Q Consensus 709 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~-----~~~~~ 783 (1093)
..+.+||+.......... .+|...|..+...+--+.+++++.||.+.+|++........+..... ..+..
T Consensus 219 ~~vi~wdigg~~g~~~el-----~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpff 293 (404)
T KOG1409|consen 219 HSVIMWDIGGRKGTAYEL-----QGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFF 293 (404)
T ss_pred CceEEEeccCCcceeeee-----ccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHH
Confidence 999999987544333322 35888888888888889999999999999999987654333222211 22333
Q ss_pred cCCCCCCceeeccCCCC--CC-CCCeeEEEEccCCCEEEEEeCCeEEEEEcc-------CceeEEEECCCCCCeEEEEEc
Q 001352 784 YQPRHGPQFMVNDTTDS--NS-QEAVPCFALSKNDAYLFSASGGVISLYIVM-------TFKTILTIMPPSPTATSLAFN 853 (1093)
Q Consensus 784 ~~~~~~~~~~~~~~~~~--~~-~~~v~~l~~s~dg~~la~~~dg~i~iwd~~-------~~~~~~~~~~~~~~i~~l~~s 853 (1093)
|+...--......+... .+ ...+...+-+....+...+..-.+++-|.- +...+..+......|+++.+.
T Consensus 294 wn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlq 373 (404)
T KOG1409|consen 294 WNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQ 373 (404)
T ss_pred HHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhh
Confidence 33221100000000000 00 112222222222222222323334444421 112233443344679999998
Q ss_pred CCCCCEEEEEeCCCeEEEEEcCC
Q 001352 854 PHDNNVIAIGMDDSTILIYNARS 876 (1093)
Q Consensus 854 ~~d~~~lasg~~dg~i~iwd~~~ 876 (1093)
. .-.+|+|++.|..|+|||+..
T Consensus 374 e-tlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 374 E-TLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred h-hccceeecCCceEEEEEechh
Confidence 8 677999999999999999864
No 271
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.28 E-value=1.4e-09 Score=124.74 Aligned_cols=205 Identities=14% Similarity=0.120 Sum_probs=138.8
Q ss_pred CeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCC---CeEEEEEcCCcceeeecccccCCeEEEEEeCCCC
Q 001352 824 GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD---STILIYNARSSEVISKLEGHSKRVTGLVFSDALN 900 (1093)
Q Consensus 824 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d---g~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~ 900 (1093)
..|.++|... ...+.+..+...+...+|+| |+++|+.+..+ ..|++||+.+++... +..+.+.+.+++|+|||+
T Consensus 170 ~~l~~~d~~g-~~~~~l~~~~~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 170 YELQVADYDG-ANPQTITRSREPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGS 246 (417)
T ss_pred ceEEEEcCCC-CCCEEeecCCCceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCC
Confidence 3578888753 44455555667788999999 88888887654 489999999876533 334556677899999999
Q ss_pred EEEE-EeCCC--cEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeC----CeEEEEEcCCcceeee
Q 001352 901 ILVS-SGGDA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE----THLAIYEAEELTCLKQ 973 (1093)
Q Consensus 901 ~l~s-~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d----~~i~vwd~~~~~~~~~ 973 (1093)
.|+. .+.++ .|.+|++.++.... +. .+.. .....+|+|||+.|+...+ ..|+++|+.+++....
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~~~---l~---~~~~---~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l 317 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQLTR---LT---NGPG---IDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRL 317 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCEEE---CC---CCCC---CCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence 8764 44444 58889998765222 11 1111 2446789999999887432 2688889887765432
Q ss_pred eecCCCCCEEEEEEccCCCEEEEEeCCC---cEEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEE
Q 001352 974 WFPISSVPISQATFSCDCRMVFTSFVDG---TLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVG 1050 (1093)
Q Consensus 974 ~~~~h~~~v~~~~fs~dg~~l~t~~~dg---~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~ 1050 (1093)
..+...+..+.|+|||++|+.++.++ .|.+||+.++.... +. .. . .....+|+| |++.|+.+
T Consensus 318 --~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~------~~---~--~~~~p~~sp-dg~~l~~~ 382 (417)
T TIGR02800 318 --TFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LT------DT---G--LDESPSFAP-NGRMILYA 382 (417)
T ss_pred --ecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-cc------CC---C--CCCCceECC-CCCEEEEE
Confidence 22345677889999999999888776 78999998865431 11 11 0 012346898 57777777
Q ss_pred eCCCc
Q 001352 1051 LTNGE 1055 (1093)
Q Consensus 1051 ~~dg~ 1055 (1093)
+.++.
T Consensus 383 ~~~~~ 387 (417)
T TIGR02800 383 TTRGG 387 (417)
T ss_pred EeCCC
Confidence 77653
No 272
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.27 E-value=3.1e-10 Score=112.45 Aligned_cols=267 Identities=13% Similarity=0.203 Sum_probs=174.5
Q ss_pred CCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCC--E
Q 001352 334 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS--L 411 (1093)
Q Consensus 334 h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~--~ 411 (1093)
..+-|.+|.|..+|.+ ||+|..+|.|.++.-+.... ..+.+.-. ...-...|....--.-...|..+.|.+++. .
T Consensus 24 eadiis~vef~~~Ge~-LatGdkgGRVv~f~r~~~~~-~ey~~~t~-fqshepEFDYLkSleieEKinkIrw~~~~n~a~ 100 (433)
T KOG1354|consen 24 EADIISAVEFDHYGER-LATGDKGGRVVLFEREKLYK-GEYNFQTE-FQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAE 100 (433)
T ss_pred hhcceeeEEeecccce-EeecCCCCeEEEeecccccc-cceeeeee-eeccCcccchhhhhhhhhhhhhceecCCCCccE
Confidence 4568999999999995 99999999999997543221 01111100 000000111100111246799999998764 4
Q ss_pred EEEEEcCCEEEEEEccCCCccc------------------c--------------eEE-eccccccEEEEEeeCCCCcEE
Q 001352 412 LGVAYSKHIVQLYAYHGGSDAR------------------Q--------------QLE-IDAHVGNVNDLAFSAPCKQIS 458 (1093)
Q Consensus 412 las~~~d~~i~iwd~~~~~~~~------------------~--------------~~~-~~~h~~~v~~~~~s~d~~~l~ 458 (1093)
++..+.|.+|++|.+....... . ... -.+|+.-|++++++.|+. .
T Consensus 101 FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E--t 178 (433)
T KOG1354|consen 101 FLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE--T 178 (433)
T ss_pred EEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc--e
Confidence 5566789999999986432111 0 011 136788899999999998 5
Q ss_pred EEEEcCCCcEEEEECCCCceeE---EeecC-----CCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceE----Ee
Q 001352 459 VITCGDDKTIKVWDAVTGSRTY---SFEGH-----GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV----DY 526 (1093)
Q Consensus 459 l~s~~~d~~i~vwd~~~~~~~~---~~~~h-----~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~----~~ 526 (1093)
++++. |=.|.+|+++--..-. .++.+ +..|++..|+|... ..++-.+..|+|++.|++.....- .+
T Consensus 179 ~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c-n~f~YSSSKGtIrLcDmR~~aLCd~hsKlf 256 (433)
T KOG1354|consen 179 FLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC-NVFVYSSSKGTIRLCDMRQSALCDAHSKLF 256 (433)
T ss_pred Eeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc-cEEEEecCCCcEEEeechhhhhhcchhhhh
Confidence 66655 7789999987443222 22222 34577888888754 578888889999999998432111 11
Q ss_pred cCC------------CCceEEEEEccCCCEEEEEecCCCCceeEEEEeC-CCCeeeeeeeccccc---------CCC---
Q 001352 527 DAP------------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE-SEGAIKRTYQGLQLQ---------HNS--- 581 (1093)
Q Consensus 527 ~~~------------~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~-~~~~~~~~~~~~~~~---------~~~--- 581 (1093)
..+ -..|..+.|+++|+++++-. -..|.+||+ ...+++.+++.|..- .+.
T Consensus 257 Eepedp~~rsffseiIsSISDvKFs~sGryilsRD-----yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~Ifd 331 (433)
T KOG1354|consen 257 EEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-----YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFD 331 (433)
T ss_pred ccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-----cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhh
Confidence 111 12578899999999999853 356999999 456677777666411 122
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 001352 582 VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 612 (1093)
Q Consensus 582 v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~ 612 (1093)
-..++|+.++.++++|+....+++++...|.
T Consensus 332 KFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 332 KFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred eeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 2357899999999999999999999965543
No 273
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.24 E-value=1.2e-09 Score=117.13 Aligned_cols=194 Identities=13% Similarity=0.188 Sum_probs=155.1
Q ss_pred CCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEe------eC------------CCCcEEEEEEcCCCc
Q 001352 406 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF------SA------------PCKQISVITCGDDKT 467 (1093)
Q Consensus 406 s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~------s~------------d~~~l~l~s~~~d~~ 467 (1093)
.|.+.|+|....||.++|||+..++....+.....-++.-++..| +| .+....++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 356789999999999999999998754433222223344444444 22 122237888899999
Q ss_pred EEEEECCCCceeEEee--cCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEE
Q 001352 468 IKVWDAVTGSRTYSFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL 545 (1093)
Q Consensus 468 i~vwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 545 (1093)
|.+|++..|+....+. .|.+.|+++.++ .+-..|.+++.|+.+..|+.........+......+.+++++|||..+
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~--~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDA--QRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL 159 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecc--cccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence 9999999999988885 599999998774 344689999999999999999999999999888899999999999999
Q ss_pred EEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCC-----CCEEEE-EeCCCcEEEEECCC
Q 001352 546 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-----KDQILA-AGDDHVIKIWDMNK 610 (1093)
Q Consensus 546 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~-----~~~l~~-~~~dg~i~iwd~~~ 610 (1093)
++++. .|.+||+++++.+..|.||. ++|.++.|..+ |.++++ ...+..+.+|-...
T Consensus 160 ~~as~------~ik~~~~~~kevv~~ftgh~---s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 160 LTASR------QIKVLDIETKEVVITFTGHG---SPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred Eeccc------eEEEEEccCceEEEEecCCC---cceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 98853 59999999999999999999 99999999877 677776 44566677886654
No 274
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.24 E-value=1.1e-09 Score=117.44 Aligned_cols=189 Identities=14% Similarity=0.221 Sum_probs=148.6
Q ss_pred cCCCEEEEEe-CCeEEEEEccCceeEEEECCCC---CCeEEEEE------cC-------------CCCCEEEEEeCCCeE
Q 001352 813 KNDAYLFSAS-GGVISLYIVMTFKTILTIMPPS---PTATSLAF------NP-------------HDNNVIAIGMDDSTI 869 (1093)
Q Consensus 813 ~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~---~~i~~l~~------s~-------------~d~~~lasg~~dg~i 869 (1093)
|-+.++|... ||.+++|+...++....+.+.. +..++..| +| .|..+++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4456777775 7999999999998888776422 22333332 22 155688889999999
Q ss_pred EEEEcCCcceeeecc--cccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEcc
Q 001352 870 LIYNARSSEVISKLE--GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK 947 (1093)
Q Consensus 870 ~iwd~~~~~~~~~l~--~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 947 (1093)
.+|++..|+....+. .|.+.|.++.++.+-..|-|++.|+.+..|+..... .+........ .+.+++.+|
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~-----~~~~~~~~~~---~~~sl~is~ 154 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV-----IIRIWKEQKP---LVSSLCISP 154 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce-----eeeeeccCCC---ccceEEEcC
Confidence 999999999988886 499999999999999999999999999999998843 3334333332 588999999
Q ss_pred CCCEEEEEeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccC-----CCEEE-EEeCCCcEEEEEcCCC
Q 001352 948 DQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCD-----CRMVF-TSFVDGTLSIHEASNL 1011 (1093)
Q Consensus 948 dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~d-----g~~l~-t~~~dg~v~vwd~~~~ 1011 (1093)
||+.|+++ .++|++||+++++.+.. +.||.++|..+.|-.+ |.+++ ++..+..+.+|-+...
T Consensus 155 D~~~l~~a-s~~ik~~~~~~kevv~~-ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~ 222 (541)
T KOG4547|consen 155 DGKILLTA-SRQIKVLDIETKEVVIT-FTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE 222 (541)
T ss_pred CCCEEEec-cceEEEEEccCceEEEE-ecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence 99988874 36899999999999987 7799999999999887 66655 4445566888877663
No 275
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.15 E-value=4.2e-08 Score=110.54 Aligned_cols=186 Identities=12% Similarity=0.046 Sum_probs=111.3
Q ss_pred EEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEE
Q 001352 458 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 537 (1093)
Q Consensus 458 ~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~ 537 (1093)
.++.++.++.|..+|..+|+.+.............. -++..++.++.+|.+..+|..+++................
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~----v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~ 142 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG----ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL 142 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE----EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence 577888899999999999999877654432222222 2345788889999999999999888776654432111111
Q ss_pred EccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccC--CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE
Q 001352 538 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT 615 (1093)
Q Consensus 538 ~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~--~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 615 (1093)
. .+..++.+.. ++.++.||.++|+.+-.+....... ....+.... +..++.+..+|.+..+|..+|+.+.
T Consensus 143 v--~~~~v~v~~~----~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W 214 (377)
T TIGR03300 143 V--ANGLVVVRTN----DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLW 214 (377)
T ss_pred E--ECCEEEEECC----CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEee
Confidence 2 2344555443 6679999999998876655432000 000111111 2467788889999999999998776
Q ss_pred EEecCCCCC--CC---ceEEEec--CCCEEEEEECCCeEEEEEcCCC
Q 001352 616 TIDAGGGLP--EN---PRICFNK--NGTLLAVIANENRIKILETPES 655 (1093)
Q Consensus 616 ~~~~~~~~~--~v---~~v~~s~--~~~~l~~~~~dg~i~iw~~~~~ 655 (1093)
......... .+ ..+.-+| .+..+++++.+|.+..||..++
T Consensus 215 ~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG 261 (377)
T TIGR03300 215 EQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG 261 (377)
T ss_pred eeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC
Confidence 543221100 00 0000011 2345666666666666666544
No 276
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.07 E-value=1.7e-07 Score=105.62 Aligned_cols=273 Identities=14% Similarity=0.084 Sum_probs=169.0
Q ss_pred EEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCC
Q 001352 351 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS 430 (1093)
Q Consensus 351 lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~ 430 (1093)
+.+++.+|.|.-+|..+|+.+-...+. + ......+ .++..+++++.++.+..+|..+|+
T Consensus 68 v~v~~~~g~v~a~d~~tG~~~W~~~~~-----------------~--~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~ 126 (377)
T TIGR03300 68 VYAADADGTVVALDAETGKRLWRVDLD-----------------E--RLSGGVG--ADGGLVFVGTEKGEVIALDAEDGK 126 (377)
T ss_pred EEEECCCCeEEEEEccCCcEeeeecCC-----------------C--CcccceE--EcCCEEEEEcCCCEEEEEECCCCc
Confidence 677788899999999999877543221 1 1011122 257788888899999999999987
Q ss_pred cccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEee-ecccCCccEEEEEecC
Q 001352 431 DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC-PHAKENIHFIFSISVD 509 (1093)
Q Consensus 431 ~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~-~~~~~~~~~l~s~~~d 509 (1093)
.+... . ..+.+.+.-... +. .++.++.++.+..||.++|+.+.++......+.... ..|.-.+..++.+..+
T Consensus 127 ~~W~~---~-~~~~~~~~p~v~-~~--~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~ 199 (377)
T TIGR03300 127 ELWRA---K-LSSEVLSPPLVA-NG--LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAG 199 (377)
T ss_pred Eeeee---c-cCceeecCCEEE-CC--EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCC
Confidence 65422 1 112222211112 33 466677799999999999998877654332211000 0000011367788889
Q ss_pred CeEEEEEcCCCCceEEecCCCC----c---eEEEEEcc--CCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCC
Q 001352 510 GKIKAWLYDSLGARVDYDAPGL----G---CTRMAYSA--NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN 580 (1093)
Q Consensus 510 g~i~vwd~~~~~~~~~~~~~~~----~---v~~~~~s~--d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~ 580 (1093)
|.+..+|..+++.......... . ...+.-+| .+..+++++. ++.++.+|..+|+.+-.....
T Consensus 200 g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~----~g~l~a~d~~tG~~~W~~~~~----- 270 (377)
T TIGR03300 200 GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY----QGRVAALDLRSGRVLWKRDAS----- 270 (377)
T ss_pred CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEc----CCEEEEEECCCCcEEEeeccC-----
Confidence 9999999988876654332110 0 00010111 2445665554 556999999999876554421
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeee
Q 001352 581 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDA 660 (1093)
Q Consensus 581 ~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 660 (1093)
...... ..+..+++++.+|.++.+|..+|+.+........ ....+... .+..+++++.+|.+.+++..+++.+..
T Consensus 271 ~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~-~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~ 345 (377)
T TIGR03300 271 SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKY-RQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVAR 345 (377)
T ss_pred CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccC-CccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 111122 2467888889999999999999988766532111 11222222 367899999999999999999988776
Q ss_pred ccccc
Q 001352 661 AGVLS 665 (1093)
Q Consensus 661 ~~~~~ 665 (1093)
...+.
T Consensus 346 ~~~~~ 350 (377)
T TIGR03300 346 LKTDG 350 (377)
T ss_pred EEcCC
Confidence 66444
No 277
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=99.07 E-value=9.8e-05 Score=84.89 Aligned_cols=622 Identities=11% Similarity=0.058 Sum_probs=304.1
Q ss_pred cCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC----
Q 001352 333 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD---- 408 (1093)
Q Consensus 333 ~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d---- 408 (1093)
|..+-..|+.+-++| +|.+||.-|.=.+-.+.+-..... ....+.. + ..-++|..++.-.+
T Consensus 304 ge~siassi~~L~ng--~lFvGS~~gdSqLi~L~~e~d~gs----------y~~ilet--~-~NLgPI~Dm~Vvd~d~q~ 368 (1096)
T KOG1897|consen 304 GETSIASSINYLDNG--VLFVGSRFGDSQLIKLNTEPDVGS----------YVVILET--F-VNLGPIVDMCVVDLDRQG 368 (1096)
T ss_pred CCcchhhhhhcccCc--eEEEeccCCceeeEEccccCCCCc----------hhhhhhh--c-ccccceeeEEEEeccccC
Confidence 455566778888888 588888866655555544322210 0001111 0 12247777765432
Q ss_pred CCEEEEEE---cCCEEEEEEccCCCcccceEEeccccccEEEEE--eeCCCCcEEEEEEcCCCcEEEEECCCCceeEEee
Q 001352 409 GSLLGVAY---SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLA--FSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 483 (1093)
Q Consensus 409 g~~las~~---~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~--~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~ 483 (1093)
+..+++|+ .||++++..-.-+-.......+.| -..++.+. +.+.-.. +++.+-.+ .-++..+...-......
T Consensus 369 q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~-ylvlsf~~-eTrvl~i~~e~ee~~~~ 445 (1096)
T KOG1897|consen 369 QGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDN-YLVLSFIS-ETRVLNISEEVEETEDP 445 (1096)
T ss_pred CceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCc-EEEEEecc-ceEEEEEccceEEeccc
Confidence 34566664 578899987554422222223445 34566666 4433222 23322222 23344432221111122
Q ss_pred cCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001352 484 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 563 (1093)
Q Consensus 484 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 563 (1093)
+.......+..+.- +++.|+-.. ...||+++-. .....+..+. .++....+.+...++.++. ...+...++
T Consensus 446 gf~~~~~Tif~S~i-~g~~lvQvT-s~~iRl~ss~--~~~~~W~~p~-~~ti~~~~~n~sqVvvA~~----~~~l~y~~i 516 (1096)
T KOG1897|consen 446 GFSTDEQTIFCSTI-NGNQLVQVT-SNSIRLVSSA--GLRSEWRPPG-KITIGVVSANASQVVVAGG----GLALFYLEI 516 (1096)
T ss_pred cccccCceEEEEcc-CCceEEEEe-cccEEEEcch--hhhhcccCCC-ceEEEEEeecceEEEEecC----ccEEEEEEe
Confidence 22222223222211 112222211 2235555322 2222233233 3333444445555555543 333555566
Q ss_pred CCCeeeeeeecccccCCCeEEEEEcCCC------CEEEEEeCCCcEEEE-ECCCCceEEEEecCC--CCCCCceEEEecC
Q 001352 564 SEGAIKRTYQGLQLQHNSVSVVHFDTAK------DQILAAGDDHVIKIW-DMNKVQLLTTIDAGG--GLPENPRICFNKN 634 (1093)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~------~~l~~~~~dg~i~iw-d~~~~~~~~~~~~~~--~~~~v~~v~~s~~ 634 (1093)
..+.+....+. .....|.|+.++|-+ ++++.|..+..+.+. -..+...+....... -...|.-..+-.|
T Consensus 517 ~~~~l~e~~~~--~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d 594 (1096)
T KOG1897|consen 517 EDGGLREVSHK--EFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGD 594 (1096)
T ss_pred eccceeeeeeh--eecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeecc
Confidence 55553222222 224789999999752 256677766555443 333333333322221 1112334455567
Q ss_pred CCEEEEEECCCeEEEEEcC--CCceeeec--ccccccceee---------eecCCCceeeeeccCCceEecCCC------
Q 001352 635 GTLLAVIANENRIKILETP--ESNSVDAA--GVLSDNLRKL---------SVNPISTVTGAGIANGSVSVNEDP------ 695 (1093)
Q Consensus 635 ~~~l~~~~~dg~i~iw~~~--~~~~~~~~--~~~~~~i~~~---------~~~~~~~~~~~~~~~~~~~~~~~~------ 695 (1093)
..+|.++..||.+.-+-+. ++..-... .-...++.-- .|........+-...+...|.+-.
T Consensus 595 ~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~ 674 (1096)
T KOG1897|consen 595 IHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNH 674 (1096)
T ss_pred ceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhh
Confidence 8899999999998876554 33221111 1111111111 111112222222233333331111
Q ss_pred -----CCC-CccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCccc
Q 001352 696 -----KED-VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL 769 (1093)
Q Consensus 696 -----s~d-~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~ 769 (1093)
++. +.-++++ ..+.+++..++.-.....+.+ | -......+++.+....+.+.+.......=
T Consensus 675 ~c~f~s~a~~d~l~~~-~~~~l~i~tid~iqkl~irtv--p---l~~~prrI~~q~~sl~~~v~s~r~e~~~~------- 741 (1096)
T KOG1897|consen 675 MCPFNSDAYPDSLASA-NGGALTIGTIDEIQKLHIRTV--P---LGESPRRICYQESSLTFGVLSNRIESSAE------- 741 (1096)
T ss_pred hcccccccCCceEEEe-cCCceEEEEecchhhcceeee--c---CCCChhheEecccceEEEEEecccccchh-------
Confidence 111 1223333 235555555443222222221 1 12344556666644444443332211100
Q ss_pred CcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccC-CCEEEEEe-----------CCeEEEEEccCceeE
Q 001352 770 TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN-DAYLFSAS-----------GGVISLYIVMTFKTI 837 (1093)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d-g~~la~~~-----------dg~i~iwd~~~~~~~ 837 (1093)
..+.......++++|..+-+.+...++...+....+.+..|..| +.++++|. .|.|.++.+..+..+
T Consensus 742 -~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L 820 (1096)
T KOG1897|consen 742 -YYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSL 820 (1096)
T ss_pred -hcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCce
Confidence 00111112345666766655444444432222334444558877 77888774 267999988875444
Q ss_pred EEECCC--CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEe
Q 001352 838 LTIMPP--SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 915 (1093)
Q Consensus 838 ~~~~~~--~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd 915 (1093)
+....+ .+.+.++..- +|++|| +-...|++|+..+.+.++.-..|..++..+...-.|..++.|.--+.+.+-.
T Consensus 821 ~~v~e~~v~Gav~aL~~f--ngkllA--~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~ 896 (1096)
T KOG1897|consen 821 ELVAETVVKGAVYALVEF--NGKLLA--GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQ 896 (1096)
T ss_pred eeeeeeeeccceeehhhh--CCeEEE--ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEE
Confidence 444322 2344444332 677776 3456899999999877777778999999999999999999999888887766
Q ss_pred CCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcc----------eeeeeecC-------C
Q 001352 916 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELT----------CLKQWFPI-------S 978 (1093)
Q Consensus 916 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~----------~~~~~~~~-------h 978 (1093)
....+... ........ +.+++++.+-.+..++.+-.+|.+.+-...+.. ....+..| |
T Consensus 897 y~~~eg~f---~evArD~~--p~Wmtaveil~~d~ylgae~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f~h 971 (1096)
T KOG1897|consen 897 YKGDEGNF---EEVARDYN--PNWMTAVEILDDDTYLGAENSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKFRH 971 (1096)
T ss_pred EeccCCce---EEeehhhC--ccceeeEEEecCceEEeecccccEEEEEecCCCCchhhhhcccceeeEEeccceeeeee
Confidence 65544211 11111111 147889999999988888777776665443210 11111111 3
Q ss_pred CCCEEEE--EEccCCCEEEEEeCCCcEEEE
Q 001352 979 SVPISQA--TFSCDCRMVFTSFVDGTLSIH 1006 (1093)
Q Consensus 979 ~~~v~~~--~fs~dg~~l~t~~~dg~v~vw 1006 (1093)
..-|..+ .-+|-+..+..|+.+|.|-+-
T Consensus 972 g~lv~~~~~s~~~~~~~vlfgTv~GsIG~i 1001 (1096)
T KOG1897|consen 972 GSLVMQLGDSMIPLEPKVLFGTVNGSIGII 1001 (1096)
T ss_pred cceEeeccccccCCCCcEEEEEccceEEEE
Confidence 3333331 223444457778889888764
No 278
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.04 E-value=1.4e-07 Score=117.39 Aligned_cols=260 Identities=11% Similarity=0.072 Sum_probs=161.9
Q ss_pred EEEEeecC-CceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCE
Q 001352 739 SRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY 817 (1093)
Q Consensus 739 ~~l~~s~~-g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~ 817 (1093)
..++++++ +..+++-..++.|.+++.........+.... .....|. ... +.-.....+++++++..
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~------~G~~dG~-~~~------a~f~~P~GIavd~~gn~ 637 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGE------EGLRDGS-FED------ATFNRPQGLAYNAKKNL 637 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCC------cCCCCCc-hhc------cccCCCcEEEEeCCCCE
Confidence 35778764 5566666667888888765332100000000 0000010 000 12234578999999887
Q ss_pred EEEEe--CCeEEEEEccCceeEEEECCC-----------------CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcc
Q 001352 818 LFSAS--GGVISLYIVMTFKTILTIMPP-----------------SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 878 (1093)
Q Consensus 818 la~~~--dg~i~iwd~~~~~~~~~~~~~-----------------~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~ 878 (1093)
|.++. ++.|+++|..++.. .++.+. -.....++|+|+++.++++.+.++.|++||..++.
T Consensus 638 LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~ 716 (1057)
T PLN02919 638 LYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV 716 (1057)
T ss_pred EEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe
Confidence 77665 47799999877643 333210 11346799999566677777788999999998765
Q ss_pred eeeecc---------cc------cCCeEEEEEeCCCCE-EEEEeCCCcEEEEeCCCCceeeeee--------eecCC---
Q 001352 879 VISKLE---------GH------SKRVTGLVFSDALNI-LVSSGGDAQIFVWDVDGWGIQTCRS--------LQTPD--- 931 (1093)
Q Consensus 879 ~~~~l~---------~h------~~~V~~l~~s~dg~~-l~s~s~dg~i~iwd~~~~~~~~~~~--------~~~~~--- 931 (1093)
.. .+. ++ -.....++++|++++ +++-+.++.|++||+.++......- .....
T Consensus 717 v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~d 795 (1057)
T PLN02919 717 TR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHD 795 (1057)
T ss_pred EE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCC
Confidence 42 111 11 123567999999984 5555667899999998765321000 00000
Q ss_pred C--cccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcceeeeeecC------------CCCCEEEEEEccCCCEEEE
Q 001352 932 G--VMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPI------------SSVPISQATFSCDCRMVFT 996 (1093)
Q Consensus 932 ~--~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~------------h~~~v~~~~fs~dg~~l~t 996 (1093)
+ ..........++++++|+++++ ..+++|++||..++......-.+ +-.....+++++||+++++
T Consensus 796 G~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa 875 (1057)
T PLN02919 796 GVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA 875 (1057)
T ss_pred CchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE
Confidence 0 0000113568999999997777 57889999999887655322111 1235778999999999999
Q ss_pred EeCCCcEEEEEcCCCce
Q 001352 997 SFVDGTLSIHEASNLEV 1013 (1093)
Q Consensus 997 ~~~dg~v~vwd~~~~~~ 1013 (1093)
-+.+++|++||+.++..
T Consensus 876 Dt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 876 DTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ECCCCEEEEEECCCCcc
Confidence 88999999999999875
No 279
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.00 E-value=1.5e-08 Score=111.96 Aligned_cols=506 Identities=12% Similarity=0.112 Sum_probs=259.0
Q ss_pred ceeeeecCCCceEEEEEcc----CCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEE
Q 001352 338 PMSMDFHPVQHTLLLVGTN----VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 413 (1093)
Q Consensus 338 V~~~~~spdg~~llasg~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~la 413 (1093)
-+-..|+|... ++|+++. .|+|.||- ++|++-....+ .-.+++++|+|..-.||
T Consensus 18 sti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~--------------------P~hatSLCWHpe~~vLa 75 (1416)
T KOG3617|consen 18 STISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVTY--------------------PVHATSLCWHPEEFVLA 75 (1416)
T ss_pred ccccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCccccc--------------------ceehhhhccChHHHHHh
Confidence 34457899888 6787764 57888885 56665442111 12356799999999999
Q ss_pred EEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEE--eecC--CCCe
Q 001352 414 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS--FEGH--GAPV 489 (1093)
Q Consensus 414 s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~--~~~h--~~~v 489 (1093)
+|..-|.+.+|...+.+.-. ....|..+|.-+.||++|. .++|+..-|.+.+|....-..++. +-.| ...+
T Consensus 76 ~gwe~g~~~v~~~~~~e~ht---v~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~l 150 (1416)
T KOG3617|consen 76 QGWEMGVSDVQKTNTTETHT---VVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQL 150 (1416)
T ss_pred hccccceeEEEecCCceeee---eccCCCCCceeEEecCCCC--eEEEcCCCceeEEEEeeeccccccchhhhhHhhcee
Confidence 99999999999988754322 3457999999999999999 899999999999998663222221 1122 2334
Q ss_pred EEeeecccCCcc------EEEEEecCCeEE-EEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEe
Q 001352 490 YSLCPHAKENIH------FIFSISVDGKIK-AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 562 (1093)
Q Consensus 490 ~~~~~~~~~~~~------~l~s~~~dg~i~-vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd 562 (1093)
+-++|.-+.++. ..+..+.+..+- .++++......... -.-.|+|..++.++. +|.|+-.|
T Consensus 151 tl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~--------ksgv~~g~~F~~~~~----~GtVyyvd 218 (1416)
T KOG3617|consen 151 TLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDE--------KSGVPKGTEFLFAGK----SGTVYYVD 218 (1416)
T ss_pred eEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhcccc--------ccCCCCCcEEEEEcC----CceEEEEc
Confidence 444544333321 223333333332 33333211111110 112367777777765 55676666
Q ss_pred CCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC-CC----------------------------Cce
Q 001352 563 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM-NK----------------------------VQL 613 (1093)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~-~~----------------------------~~~ 613 (1093)
- .|+.....+... ...+-|.+...-+++.-.+-++.++-. .+ |-+
T Consensus 219 q-~g~~~~V~k~dS-----~vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvL 292 (1416)
T KOG3617|consen 219 Q-NGRQRTVHKLDS-----EVQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVL 292 (1416)
T ss_pred C-CCcEEEEEEccc-----hHHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccc
Confidence 3 344333332211 111122222222222211111111110 00 000
Q ss_pred E--EEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCce----------eeecccccccceeeeecCCCceee
Q 001352 614 L--TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS----------VDAAGVLSDNLRKLSVNPISTVTG 681 (1093)
Q Consensus 614 ~--~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~----------~~~~~~~~~~i~~~~~~~~~~~~~ 681 (1093)
. ..+.. .....+.+++++..+..++.|...|.+.+|.-..... +...+.....|..+.|.|..+..+
T Consensus 293 r~~eKyg~-e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~a 371 (1416)
T KOG3617|consen 293 RKSEKYGL-ELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAA 371 (1416)
T ss_pred cCCcchhh-hcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhh
Confidence 0 00100 1123588999999999999999999999997543311 112223334455555655444333
Q ss_pred eeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEE
Q 001352 682 AGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLM 761 (1093)
Q Consensus 682 ~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~v 761 (1093)
+.+....+.+... ..+ ..|.....++.-+.++-.|..+.
T Consensus 372 vn~~~~v~ll~E~-----~l~-----------------------------~~h~~~~~A~q~ss~S~~L~hc~------- 410 (1416)
T KOG3617|consen 372 VNTEEDVVLLGEN-----SLT-----------------------------VKHRGKMAAIQTSSNSFTLLHCT------- 410 (1416)
T ss_pred hhhhhheeeeccC-----chH-----------------------------HHHhhhhHHhhhcCCceEEEeec-------
Confidence 3222221111000 000 00111111111111111111110
Q ss_pred eeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEE--E
Q 001352 762 WRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTIL--T 839 (1093)
Q Consensus 762 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~--~ 839 (1093)
+|. ... + ...-++..++.+. ..+++....+|..|++.+..... .
T Consensus 411 --------------------------sGv-~~~--l---~~~~~~~gi~l~e--~~lvvwNgr~v~~y~lq~SG~la~~~ 456 (1416)
T KOG3617|consen 411 --------------------------SGV-SQD--L---KLSIPSAGICLGE--KQLVVWNGRTVVTYDLQTSGSLATIQ 456 (1416)
T ss_pred --------------------------cch-hhh--h---hhccchhhheecc--ceEEEEcCceEEEEEecccchhHHHh
Confidence 110 000 0 0122333445433 34666666788889886332111 1
Q ss_pred ECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeec--ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 001352 840 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL--EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 917 (1093)
Q Consensus 840 ~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l--~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~ 917 (1093)
........+++++. +.++...++.+ |.++.+. |...+.+ ..-.+.|..+.++ |.+++.....+.++-+|+.
T Consensus 457 ~~tF~cet~~la~~--nqN~ycies~~--Vfvrt~q-Gtv~q~i~~seiEg~~~~ldi~--g~~l~v~t~~~~~k~~dvs 529 (1416)
T KOG3617|consen 457 CTTFSCETTSLAIV--NQNLYCIESDK--VFVRTLQ-GTVRQEISLSEIEGVVVLLDIM--GELLIVQTVSTVAKRLDVS 529 (1416)
T ss_pred hhhhccccchHhHh--hcceEEeccCc--EEEEecc-hhhhhhccchhccCceehhhhc--cceeEEeehHHHHHHhhhh
Confidence 11122333445554 33455555544 5555554 4333322 3344556556654 7889988888888888888
Q ss_pred CCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE---EeC----CeEEEEEcCCccee
Q 001352 918 GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL---VHE----THLAIYEAEELTCL 971 (1093)
Q Consensus 918 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~---~~d----~~i~vwd~~~~~~~ 971 (1093)
..+...........+-....+.+..+..+..|..+.+ ..+ .++.+||.+++...
T Consensus 530 r~e~ka~~~~~s~~~~~d~~g~~~~~~c~ssgS~~~v~~a~~~~~pisTl~~~DFe~s~~~ 590 (1416)
T KOG3617|consen 530 RAELKAVSYFSSDRGMTDTQGYETQAECASSGSGRPVTAAARKMAPISTLFCWDFEQSRFQ 590 (1416)
T ss_pred hhcccccccccccccccCCcCceEEEeeccCCCCcccchhhccCCCcceeEeeccchhhHH
Confidence 7664443333333333333356778888877766554 222 47999999877643
No 280
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.00 E-value=1.8e-07 Score=92.21 Aligned_cols=205 Identities=19% Similarity=0.155 Sum_probs=139.7
Q ss_pred EEEccCCCEEEEEeCCeEEEEEccCc--eeEEE---ECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeec
Q 001352 809 FALSKNDAYLFSASGGVISLYIVMTF--KTILT---IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 883 (1093)
Q Consensus 809 l~~s~dg~~la~~~dg~i~iwd~~~~--~~~~~---~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l 883 (1093)
++.+.||++||+..|..|.|-..+.. ..+.+ .+.....=+.++||| |+.+||.+...|+|++||+.... +..+
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~-lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSE-LFVI 80 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEecccce-eEEc
Confidence 57789999999999999988876542 12222 233445668999999 99999999999999999998543 3333
Q ss_pred cc-------ccCCeEEEEEeCCC------CEEEEEeCCCcEEEEeCCCCcee---eeeeeecCCCcccCCCCceEEEEcc
Q 001352 884 EG-------HSKRVTGLVFSDAL------NILVSSGGDAQIFVWDVDGWGIQ---TCRSLQTPDGVMTLAPSETHIQFHK 947 (1093)
Q Consensus 884 ~~-------h~~~V~~l~~s~dg------~~l~s~s~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~s~ 947 (1093)
.. -...|..+.|.+-. ..|+....+|.++=|-+..+... ............ ..|.++.+.|
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp---~Gi~~~vy~p 157 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYP---HGINSAVYHP 157 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCC---CceeEEEEcC
Confidence 22 23467777776432 24666677888887776432211 111222222222 4799999999
Q ss_pred CCCEEEEEe-----C-------CeEEEEEcCCcceee--------------------eee--------cCCCCCEEEEEE
Q 001352 948 DQTRFLLVH-----E-------THLAIYEAEELTCLK--------------------QWF--------PISSVPISQATF 987 (1093)
Q Consensus 948 dg~~l~~~~-----d-------~~i~vwd~~~~~~~~--------------------~~~--------~~h~~~v~~~~f 987 (1093)
..++|++++ + -.+.-|.+-++..-- .+. ......|..|..
T Consensus 158 ~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSl 237 (282)
T PF15492_consen 158 KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSL 237 (282)
T ss_pred CCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEE
Confidence 999988841 1 136677653321100 000 112668999999
Q ss_pred ccCCCEEEEEeCCCcEEEEEcCCCceEEEec
Q 001352 988 SCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1018 (1093)
Q Consensus 988 s~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~ 1018 (1093)
||||+.||+...+|.|.+|++++.++...+.
T Consensus 238 SPdg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 238 SPDGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred CCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 9999999999999999999999999887776
No 281
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=2.8e-09 Score=111.76 Aligned_cols=244 Identities=14% Similarity=0.198 Sum_probs=169.7
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCC-Cccc---ceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcE
Q 001352 393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG-SDAR---QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 468 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~-~~~~---~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i 468 (1093)
+.||...|.+++--.+..-+++++.|.+|++|.+... ..+. ...++..|+.+|.++.|..+.+ ++++ .||.|
T Consensus 731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~S--cD~gi 806 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIAS--CDGGI 806 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeee--ccCcc
Confidence 7799999999988778888999999999999998742 2222 4457889999999999999987 5554 47889
Q ss_pred EEEECCCCceeEEeec--CCCCeEEeeecccCCccEEEEE-ecCCeEEEEEcCCCCceEEe-----cCCCCceEEEEEcc
Q 001352 469 KVWDAVTGSRTYSFEG--HGAPVYSLCPHAKENIHFIFSI-SVDGKIKAWLYDSLGARVDY-----DAPGLGCTRMAYSA 540 (1093)
Q Consensus 469 ~vwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~-----~~~~~~v~~~~~s~ 540 (1093)
.+||.--|+.+..+.. ..+.+..+...++-+...++++ +...+|+++|.+..+-...+ .++...+.++++.+
T Consensus 807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~ 886 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD 886 (1034)
T ss_pred eeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc
Confidence 9999988887764321 1122222222233344555555 78899999999887655443 33455689999999
Q ss_pred CCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEE-EECCCCceEEEEec
Q 001352 541 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI-WDMNKVQLLTTIDA 619 (1093)
Q Consensus 541 d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~~ 619 (1093)
.|+.++++-. .++|.+.|.++|+.+..+.... .....++ .|..+.++....|.++.+ |..-.|....+...
T Consensus 887 ~GN~lAa~LS----nGci~~LDaR~G~vINswrpme---cdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kp 958 (1034)
T KOG4190|consen 887 KGNKLAAALS----NGCIAILDARNGKVINSWRPME---CDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKP 958 (1034)
T ss_pred CcchhhHHhc----CCcEEEEecCCCceeccCCccc---chhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCC
Confidence 9999998865 6789999999999887766544 3333332 355567777888899998 98877766554432
Q ss_pred CCCCCCCceEEEecCCCEEEEEECCCeEEEEEc
Q 001352 620 GGGLPENPRICFNKNGTLLAVIANENRIKILET 652 (1093)
Q Consensus 620 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 652 (1093)
... ..--...-|.-++++...+.+.+|.-
T Consensus 959 ppe----pahflqsvgpSLV~a~~Gn~lgVYad 987 (1034)
T KOG4190|consen 959 PPE----PAHFLQSVGPSLVTAQNGNILGVYAD 987 (1034)
T ss_pred CCc----chhhhhccCceeEEeccCcEEEEEec
Confidence 211 11111123556667666667777653
No 282
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.99 E-value=2.4e-07 Score=115.31 Aligned_cols=254 Identities=11% Similarity=0.073 Sum_probs=158.8
Q ss_pred eEEEEccCCC-EEEEEe-CCeEEEEEccCceeEEEECC-C-------------CCCeEEEEEcCCCCCEEEEEe-CCCeE
Q 001352 807 PCFALSKNDA-YLFSAS-GGVISLYIVMTFKTILTIMP-P-------------SPTATSLAFNPHDNNVIAIGM-DDSTI 869 (1093)
Q Consensus 807 ~~l~~s~dg~-~la~~~-dg~i~iwd~~~~~~~~~~~~-~-------------~~~i~~l~~s~~d~~~lasg~-~dg~i 869 (1093)
..+++++++. ++++-. ++.|+++|.. +..+..+.. . -.....+++++ ++..|+++. ..+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence 4678887654 444433 5889999976 444444332 1 12357899998 666555544 45789
Q ss_pred EEEEcCCcceeeecccc-----------------cCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeeeee---ee
Q 001352 870 LIYNARSSEVISKLEGH-----------------SKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRS---LQ 928 (1093)
Q Consensus 870 ~iwd~~~~~~~~~l~~h-----------------~~~V~~l~~s~-dg~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~ 928 (1093)
+++|+.++.. .++.+- -.....++|+| ++.++++.+.++.|++||..++......- ..
T Consensus 649 r~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 9999887543 333210 12346799999 56677777888999999998765322100 00
Q ss_pred cCCCcc---cCCCCceEEEEccCCCEEEE--EeCCeEEEEEcCCcceeeeee-----------cC---------CCCCEE
Q 001352 929 TPDGVM---TLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTCLKQWF-----------PI---------SSVPIS 983 (1093)
Q Consensus 929 ~~~~~~---~~~~~v~~~~~s~dg~~l~~--~~d~~i~vwd~~~~~~~~~~~-----------~~---------h~~~v~ 983 (1093)
...+.. ........++++|+|+.|.+ ..+++|++||+.++....... .+ .-....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 000100 00124677999999986665 466899999998765321100 00 011345
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccc-cCCCC--CCCccceeEEEeCCCCCCEEEEEeCCCcEEEEe
Q 001352 984 QATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY-LRPTT--SCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1060 (1093)
Q Consensus 984 ~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~-~~~~~--~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~ 1060 (1093)
.++|++||.++++-+.+++|++||..++........... ...+. ...--.|..++++| +|+.+++-+.+++|++|+
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEE
Confidence 889999999999888999999999998876543321100 00000 00112356788888 578888888999999999
Q ss_pred cCCC
Q 001352 1061 PNEP 1064 (1093)
Q Consensus 1061 ~~~~ 1064 (1093)
+...
T Consensus 887 ~~~~ 890 (1057)
T PLN02919 887 LNKG 890 (1057)
T ss_pred CCCC
Confidence 9654
No 283
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.98 E-value=4e-08 Score=95.96 Aligned_cols=254 Identities=15% Similarity=0.100 Sum_probs=156.8
Q ss_pred Cceeeeec---CCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEE
Q 001352 337 SPMSMDFH---PVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 413 (1093)
Q Consensus 337 ~V~~~~~s---pdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~la 413 (1093)
.+..+.|. .+|...++-+-.+|.|.++...-......+ ++++...+ ....-.++.|++.+..++
T Consensus 71 ~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L-----------~~ls~~ki--~~~~~lslD~~~~~~~i~ 137 (339)
T KOG0280|consen 71 TEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHL-----------RGLSSKKI--SVVEALSLDISTSGTKIF 137 (339)
T ss_pred ccceeeeeeccCCccceeeeccccceEEEEeeccceeeeee-----------cccchhhh--hheeeeEEEeeccCceEE
Confidence 55555554 244435666666788888876443322210 00000000 011244778999999999
Q ss_pred EEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECC-CCceeEE-eecCCCCeEE
Q 001352 414 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGSRTYS-FEGHGAPVYS 491 (1093)
Q Consensus 414 s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~-~~~~~~~-~~~h~~~v~~ 491 (1093)
++..+|.+.+-+..... +.....+++|..+.+-+.|+..... ++.+||.|+.+..||++ .++.+.. .+.|...|.+
T Consensus 138 vs~s~G~~~~v~~t~~~-le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~S 215 (339)
T KOG0280|consen 138 VSDSRGSISGVYETEMV-LEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVS 215 (339)
T ss_pred EEcCCCcEEEEecceee-eeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeeecceEE
Confidence 99999988854443332 3333367899999999999887665 79999999999999998 4455543 5678899999
Q ss_pred eeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCC--EEEEEecCCCCceeEEEEeCCCC--e
Q 001352 492 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR--RLFSCGTSKEGESFLVEWNESEG--A 567 (1093)
Q Consensus 492 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~--~l~~~~~~~~~~~~i~iwd~~~~--~ 567 (1093)
+.-++. .+.++++|+.|-.|++||.++......-....+.|..+..+|.-. .+++|-.++ ..+-+.+.+ +
T Consensus 216 I~ss~~-~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-----~ki~~~~~~~~e 289 (339)
T KOG0280|consen 216 IYSSPP-KPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG-----AKILDSSDKVLE 289 (339)
T ss_pred EecCCC-CCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcC-----ceEEEecccccc
Confidence 876643 668999999999999999997666555455567899999988533 344433211 334443322 2
Q ss_pred eeeeeecccccCCCeEEEEEcCCCCEEEEEe-CCCcEE-EEECCCC
Q 001352 568 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIK-IWDMNKV 611 (1093)
Q Consensus 568 ~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~dg~i~-iwd~~~~ 611 (1093)
....+..+..|..-...-.|......+++++ .|+.++ +|-.-++
T Consensus 290 ~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 290 FQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred hheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 1122222222224444444533334566654 555544 6654443
No 284
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.98 E-value=2.5e-09 Score=112.19 Aligned_cols=293 Identities=10% Similarity=0.109 Sum_probs=184.1
Q ss_pred HHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCC-ceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEEC
Q 001352 328 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG-QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 406 (1093)
Q Consensus 328 ~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 406 (1093)
++.+.||+..|..++--.+... +++++.|++|++|.+... ..+. .+.|... +..|+.+|..+.|-
T Consensus 728 L~nf~GH~~~iRai~AidNENS-FiSASkDKTVKLWSik~EgD~~~--------tsaCQfT-----Y~aHkk~i~~igfL 793 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENS-FISASKDKTVKLWSIKPEGDEIG--------TSACQFT-----YQAHKKPIHDIGFL 793 (1034)
T ss_pred eecccCcHHHhHHHHhcccccc-eeeccCCceEEEEEeccccCccc--------cceeeeE-----hhhccCcccceeee
Confidence 3456799999999876655554 789999999999998652 2221 1223222 66799999999999
Q ss_pred CCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCC-CCcEEEEEEcCCCcEEEEECCCCceeEEeec-
Q 001352 407 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGSRTYSFEG- 484 (1093)
Q Consensus 407 ~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d-~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~- 484 (1093)
.|-++++++ ||.|++||.--|+.+.+...-..| +.+..+...++ .+.++++.++...+|+++|.+.++....++.
T Consensus 794 ~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVc 870 (1034)
T KOG4190|consen 794 ADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVC 870 (1034)
T ss_pred eccceeeec--cCcceeecccccchhHhhhcCccc-CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEec
Confidence 999999887 677999999887766543222222 23333333343 3443555558899999999999887766643
Q ss_pred ----CCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001352 485 ----HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 560 (1093)
Q Consensus 485 ----h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~i 560 (1093)
....+++++..+ .|++++++-..|.|.+.|.+++..+..+.........++- |..+.++.... +..+-+
T Consensus 871 na~~Pna~~R~iaVa~--~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~sal----dHslaV 943 (1034)
T KOG4190|consen 871 NAPGPNALTRAIAVAD--KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSAL----DHSLAV 943 (1034)
T ss_pred cCCCCchheeEEEecc--CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcc----cceeEe
Confidence 345578888754 5578999999999999999988776655544433333332 44444544332 444666
Q ss_pred -EeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC----CceEEEEecCCCCCCCceEEEecCC
Q 001352 561 -WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK----VQLLTTIDAGGGLPENPRICFNKNG 635 (1093)
Q Consensus 561 -wd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~v~~v~~s~~~ 635 (1093)
|....|......+... .+.. ....-|..++++.....+.+|--.. ...+..+....-.+..++++.-|-.
T Consensus 944 nWhaldgimh~q~kppp---epah--flqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN 1018 (1034)
T KOG4190|consen 944 NWHALDGIMHLQDKPPP---EPAH--FLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLN 1018 (1034)
T ss_pred eehhcCCeeeeccCCCC---cchh--hhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeecccc
Confidence 8766665544433322 1111 0112255677766666677774221 1122233332222335677777766
Q ss_pred CEEEEEECCCeEEE
Q 001352 636 TLLAVIANENRIKI 649 (1093)
Q Consensus 636 ~~l~~~~~dg~i~i 649 (1093)
.-+..|...|.|.+
T Consensus 1019 ~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1019 CAFLAGNEHGAIAL 1032 (1034)
T ss_pred chhhccCCCCceee
Confidence 66677777777765
No 285
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.97 E-value=7.5e-08 Score=107.73 Aligned_cols=197 Identities=14% Similarity=0.004 Sum_probs=125.9
Q ss_pred CceeeeecCCCceEEEEEcc---CCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEE
Q 001352 337 SPMSMDFHPVQHTLLLVGTN---VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 413 (1093)
Q Consensus 337 ~V~~~~~spdg~~llasg~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~la 413 (1093)
.+....|||||+++++..+. +..|.++|+.+|+... +....+.+....|||||+.|+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--------------------lt~~~g~~~~~~~SPDG~~la 248 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--------------------IASSQGMLVVSDVSKDGSKLL 248 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--------------------EecCCCcEEeeEECCCCCEEE
Confidence 67789999999864554333 3569999999887654 222445667788999999887
Q ss_pred EEEc---CCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCC--cEEEEECCCCceeEEeecCCCC
Q 001352 414 VAYS---KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAP 488 (1093)
Q Consensus 414 s~~~---d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~~~~~~~h~~~ 488 (1093)
.... +..|.++|+.+++. + .+..+........|+|||+.+++.+ ...+ .|.+.|+.+|+..+.... ...
T Consensus 249 ~~~~~~g~~~Iy~~dl~~g~~-~---~LT~~~~~d~~p~~SPDG~~I~F~S-dr~g~~~Iy~~dl~~g~~~rlt~~-g~~ 322 (419)
T PRK04043 249 LTMAPKGQPDIYLYDTNTKTL-T---QITNYPGIDVNGNFVEDDKRIVFVS-DRLGYPNIFMKKLNSGSVEQVVFH-GKN 322 (419)
T ss_pred EEEccCCCcEEEEEECCCCcE-E---EcccCCCccCccEECCCCCEEEEEE-CCCCCceEEEEECCCCCeEeCccC-CCc
Confidence 6532 34688889887752 2 2333443344568999999744433 3333 588889888876443221 111
Q ss_pred eEEeeecccCCccEEEEEecC---------CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEE
Q 001352 489 VYSLCPHAKENIHFIFSISVD---------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 559 (1093)
Q Consensus 489 v~~~~~~~~~~~~~l~s~~~d---------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~ 559 (1093)
...| ++||+.|+..+.. ..|.+.|+.++.... +... .......|+|||+.++..... .+...+.
T Consensus 323 --~~~~--SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPDG~~I~f~~~~-~~~~~L~ 395 (419)
T PRK04043 323 --NSSV--STYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSDGGSIMFIKYL-GNQSALG 395 (419)
T ss_pred --CceE--CCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCCCCEEEEEEcc-CCcEEEE
Confidence 2255 5577777666543 257777877765433 3222 233358899999999887654 3355678
Q ss_pred EEeCCCC
Q 001352 560 EWNESEG 566 (1093)
Q Consensus 560 iwd~~~~ 566 (1093)
+.++...
T Consensus 396 ~~~l~g~ 402 (419)
T PRK04043 396 IIRLNYN 402 (419)
T ss_pred EEecCCC
Confidence 8887554
No 286
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.96 E-value=4.9e-09 Score=125.06 Aligned_cols=202 Identities=16% Similarity=0.256 Sum_probs=162.0
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352 393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 472 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 472 (1093)
+..|-..|.++.=+|...+.++|+.||.|++|.+..+..+....+. |. ..|+.+.|+.+|+ .+..+..||.+.+|.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-GN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-Cc-chhhhhhhcccCC--ceeeeccCCceeecc
Confidence 3346678899999999999999999999999999998877655443 33 8899999999999 688888899999999
Q ss_pred CCCCceeEEeecCCCCeEEeeecccCCccEEEEE---ecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEccCCCEEEEE
Q 001352 473 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI---SVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSC 548 (1093)
Q Consensus 473 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~---~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~d~~~l~~~ 548 (1093)
+. .+.....+.|......+.|.. ..++++ +.++.+.+||.-.... -.....|.+.++++++.|..+.+++|
T Consensus 2280 ~~-pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisg 2354 (2439)
T KOG1064|consen 2280 AS-PKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISG 2354 (2439)
T ss_pred cC-CcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEec
Confidence 65 666777788988888887754 345555 3568899998654332 23347888999999999999999999
Q ss_pred ecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecC
Q 001352 549 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 620 (1093)
Q Consensus 549 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 620 (1093)
+. +|.|++||++..++++.++. +. ...++++|+..|.++||++.....+..++..
T Consensus 2355 gr----~G~v~l~D~rqrql~h~~~~------------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2355 GR----KGEVCLFDIRQRQLRHTFQA------------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSE 2409 (2439)
T ss_pred CC----cCcEEEeehHHHHHHHHhhh------------hh-hhheeeccCcccceEEEEccccchhhcCchh
Confidence 87 55699999998888776654 33 4578999999999999999988887777643
No 287
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.90 E-value=1e-08 Score=122.42 Aligned_cols=224 Identities=13% Similarity=0.176 Sum_probs=164.3
Q ss_pred EEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeec-CCCCe
Q 001352 411 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-HGAPV 489 (1093)
Q Consensus 411 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~-h~~~v 489 (1093)
.......++...-|..+.+.. .+..+-..|.++.=+|... +.+||+.||.|++|....++.+..++. ....|
T Consensus 2182 ~~~~~n~~~~~~tq~~~~~~~-----~~k~~v~~v~r~~sHp~~~--~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~v 2254 (2439)
T KOG1064|consen 2182 RFTPSNLPWLGSTQTSRGASV-----MIKHPVENVRRMTSHPSDP--YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRV 2254 (2439)
T ss_pred cCCcccCCccccceeccccee-----EeecccCceeeecCCCCCc--eEEecCCCceEEEEeccCCCeEEEeeccCcchh
Confidence 333333444445455443321 2334566788888888877 799999999999999999998887753 33677
Q ss_pred EEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCee-
Q 001352 490 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI- 568 (1093)
Q Consensus 490 ~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~- 568 (1093)
+.+.|+ ..|..+..+..||.+.+|... .+.......|......+.|-. ..+++++.+.+ ++.+.+||..-...
T Consensus 2255 tr~~f~--~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d-~~n~~lwDtl~~~~~ 2328 (2439)
T KOG1064|consen 2255 TRSRFN--HQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSD-NRNVCLWDTLLPPMN 2328 (2439)
T ss_pred hhhhhc--ccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCC-CCcccchhcccCccc
Confidence 777774 456688899999999999876 455556677777777777765 66777776655 67799999643211
Q ss_pred eeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEE
Q 001352 569 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 648 (1093)
Q Consensus 569 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 648 (1093)
-..-..|. +.++++++.|..+.+++||.+|.|++||++..++.+.++. +. ...++++++..|.++
T Consensus 2329 s~v~~~H~---~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ik 2393 (2439)
T KOG1064|consen 2329 SLVHTCHD---GGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIK 2393 (2439)
T ss_pred ceeeeecC---CCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceE
Confidence 11114454 8899999999999999999999999999998888766643 23 456899999999999
Q ss_pred EEEcCCCceeeecc
Q 001352 649 ILETPESNSVDAAG 662 (1093)
Q Consensus 649 iw~~~~~~~~~~~~ 662 (1093)
||++.....+..+.
T Consensus 2394 Iw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2394 IWRLSEFGLLHTFP 2407 (2439)
T ss_pred EEEccccchhhcCc
Confidence 99999776665554
No 288
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.87 E-value=2.8e-07 Score=90.20 Aligned_cols=268 Identities=13% Similarity=0.122 Sum_probs=165.2
Q ss_pred CcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC---CCC-EEEEEEcCCEEEEEEccCCCccc
Q 001352 358 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP---DGS-LLGVAYSKHIVQLYAYHGGSDAR 433 (1093)
Q Consensus 358 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~---dg~-~las~~~d~~i~iwd~~~~~~~~ 433 (1093)
|.+.++++...+.+.--.+ .......+..+.|+. +|. .|+-+-..|.|.++.....+...
T Consensus 46 Gkl~Lys~~d~~~~~l~~~----------------q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~ 109 (339)
T KOG0280|consen 46 GKLHLYSLEDMKLSPLDTL----------------QCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSV 109 (339)
T ss_pred cceEEEeecccccCcccee----------------eeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeee
Confidence 6677888776655431111 112334566677763 555 56667788899999876543222
Q ss_pred ceEEeccccc---cEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCcee--EEeecCCCCeEEeeecccCCccEEEEEec
Q 001352 434 QQLEIDAHVG---NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT--YSFEGHGAPVYSLCPHAKENIHFIFSISV 508 (1093)
Q Consensus 434 ~~~~~~~h~~---~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~~~ 508 (1093)
.+..+..-.- ...++.|++-+. -++++..+|.+.+-+...+... ++++.|..+.+...|+... .+++.+|+.
T Consensus 110 ~L~~ls~~ki~~~~~lslD~~~~~~--~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~-pnlvytGgD 186 (339)
T KOG0280|consen 110 HLRGLSSKKISVVEALSLDISTSGT--KIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKE-PNLVYTGGD 186 (339)
T ss_pred eecccchhhhhheeeeEEEeeccCc--eEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCC-CceEEecCC
Confidence 1111211111 245778899888 5888888999986665555443 4789999999999887543 379999999
Q ss_pred CCeEEEEEcCCCC-ceEE-ecCCCCceEEEEEcc-CCCEEEEEecCCCCceeEEEEeCCC-CeeeeeeecccccCCCeEE
Q 001352 509 DGKIKAWLYDSLG-ARVD-YDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSV 584 (1093)
Q Consensus 509 dg~i~vwd~~~~~-~~~~-~~~~~~~v~~~~~s~-d~~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~ 584 (1093)
|+.+..||++..+ .+.. ...|...|.++.-+| ++.++++|+. +..|++||.++ ++++..-.. .+.|..
T Consensus 187 D~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsY----De~i~~~DtRnm~kPl~~~~v----~GGVWR 258 (339)
T KOG0280|consen 187 DGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSY----DECIRVLDTRNMGKPLFKAKV----GGGVWR 258 (339)
T ss_pred CceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEecc----ccceeeeehhcccCccccCcc----ccceEE
Confidence 9999999999443 2332 345667888888776 5778899886 66799999984 454433222 367999
Q ss_pred EEEcCCCC-EEEEEeCCCcEEEEECCCCceE--EEEecCCCCCCCceEEEecC----CCEEEEEE-CCCeEE-EEEcCCC
Q 001352 585 VHFDTAKD-QILAAGDDHVIKIWDMNKVQLL--TTIDAGGGLPENPRICFNKN----GTLLAVIA-NENRIK-ILETPES 655 (1093)
Q Consensus 585 v~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~v~~s~~----~~~l~~~~-~dg~i~-iw~~~~~ 655 (1093)
+..+|.-. .++.+..-+..+|-+.+.+... ..+..+. .-.++++..| ...+++++ .|..++ +|-..++
T Consensus 259 i~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~---~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 259 IKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDK---IHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred EEecchhhhHHHHHHHhcCceEEEecccccchheeeeccc---cccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 99998643 2333444444677776654332 1222111 1234444332 34566654 355544 6654433
No 289
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.86 E-value=1.4e-06 Score=97.68 Aligned_cols=213 Identities=9% Similarity=0.017 Sum_probs=132.2
Q ss_pred eEEEEEccCceeEEEECCCCCCeEEEEEcCCCCC-EEEEEeCC---CeEEEEEcCCcceeeecccccCCeEEEEEeCCCC
Q 001352 825 VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN-VIAIGMDD---STILIYNARSSEVISKLEGHSKRVTGLVFSDALN 900 (1093)
Q Consensus 825 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~-~lasg~~d---g~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~ 900 (1093)
.|.+-|.. |...+.+.... ......|+| |++ .++..+.+ ..|+++|+.+++...... ..+......|||||+
T Consensus 170 ~l~~~d~d-g~~~~~~~~~~-~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 170 NIVLADYT-LTYQKVIVKGG-LNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGS 245 (419)
T ss_pred eEEEECCC-CCceeEEccCC-CeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCC
Confidence 45555554 33344444333 778899999 776 36654443 479999998886544332 445566788999998
Q ss_pred EEEEE-eCC--CcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCC----eEEEEEcCCcceeee
Q 001352 901 ILVSS-GGD--AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET----HLAIYEAEELTCLKQ 973 (1093)
Q Consensus 901 ~l~s~-s~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~----~i~vwd~~~~~~~~~ 973 (1093)
.|+.. +.+ ..|.++|+.+++... +....+ ......|+|||+.|+..++. .|+++|+.+++..+.
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~~---LT~~~~------~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl 316 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLTQ---ITNYPG------IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV 316 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEEE---cccCCC------ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC
Confidence 77644 333 468888887765222 222221 12345799999998875432 699999988877554
Q ss_pred eecCCCCCEEEEEEccCCCEEEEEeCC---------CcEEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCC
Q 001352 974 WFPISSVPISQATFSCDCRMVFTSFVD---------GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKP 1044 (1093)
Q Consensus 974 ~~~~h~~~v~~~~fs~dg~~l~t~~~d---------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~ 1044 (1093)
...+. ....|||||++|+..+.. ..|.+.|+.++... .+... . . ....+|+| ||
T Consensus 317 t~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-----~---~---~~~p~~SP-DG 379 (419)
T PRK04043 317 VFHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-----G---V---NQFPRFSS-DG 379 (419)
T ss_pred ccCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-----C---C---cCCeEECC-CC
Confidence 33322 124899999998877654 26788898888653 33211 1 0 11367999 57
Q ss_pred CEEEEEeCC-CcEEEEecCCCCCC
Q 001352 1045 TQFAVGLTN-GEVYVIEPNEPGDT 1067 (1093)
Q Consensus 1045 ~~l~~~~~d-g~v~~w~~~~~~~~ 1067 (1093)
..++....+ +.-.++-++..+..
T Consensus 380 ~~I~f~~~~~~~~~L~~~~l~g~~ 403 (419)
T PRK04043 380 GSIMFIKYLGNQSALGIIRLNYNK 403 (419)
T ss_pred CEEEEEEccCCcEEEEEEecCCCe
Confidence 777666654 45456666555543
No 290
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.84 E-value=2e-06 Score=88.06 Aligned_cols=185 Identities=16% Similarity=0.191 Sum_probs=128.9
Q ss_pred EEEEccCCCEEEEEe------CCeEEEEEcc-CceeEEEECCCCCCeEEEEEcCCCCCEEEEEe----------------
Q 001352 808 CFALSKNDAYLFSAS------GGVISLYIVM-TFKTILTIMPPSPTATSLAFNPHDNNVIAIGM---------------- 864 (1093)
Q Consensus 808 ~l~~s~dg~~la~~~------dg~i~iwd~~-~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~---------------- 864 (1093)
.-+||+||++|.+.. .|.|-|||.. +.+.+..+..+.-.-..+.+.| |++.|+++-
T Consensus 55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl 133 (305)
T PF07433_consen 55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNL 133 (305)
T ss_pred CEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecCh
Confidence 468999999999884 3679999999 7788889988887778899999 887777652
Q ss_pred --CCCeEEEEEcCCcceeee--c--ccccCCeEEEEEeCCCCEEEEEeCCCc-------EEEEeCCCCceeeeeeeecCC
Q 001352 865 --DDSTILIYNARSSEVISK--L--EGHSKRVTGLVFSDALNILVSSGGDAQ-------IFVWDVDGWGIQTCRSLQTPD 931 (1093)
Q Consensus 865 --~dg~i~iwd~~~~~~~~~--l--~~h~~~V~~l~~s~dg~~l~s~s~dg~-------i~iwd~~~~~~~~~~~~~~~~ 931 (1093)
.+-++..-|..+|+++.+ + .-|...|..+++.++|..++-.-..|. |-+++-... ...+..+.
T Consensus 134 ~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~----~~~~~~p~ 209 (305)
T PF07433_consen 134 DTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA----LRLLPAPE 209 (305)
T ss_pred hhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc----ceeccCCh
Confidence 123566677888888766 5 338888999999999877765543332 444443331 11122211
Q ss_pred Cc-ccCCCCceEEEEccCCCEEEEE--eCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCc
Q 001352 932 GV-MTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT 1002 (1093)
Q Consensus 932 ~~-~~~~~~v~~~~~s~dg~~l~~~--~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~ 1002 (1093)
.. ......+-+++++++|.+++++ ..+.+.+||..++..+.... -..+..++-.+++ +++|.+ .|.
T Consensus 210 ~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~---l~D~cGva~~~~~-f~~ssG-~G~ 278 (305)
T PF07433_consen 210 EQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP---LPDACGVAPTDDG-FLVSSG-QGQ 278 (305)
T ss_pred HHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc---cCceeeeeecCCc-eEEeCC-Ccc
Confidence 11 1222478899999999999885 45789999999999887643 2356666666666 666554 344
No 291
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.81 E-value=3.6e-08 Score=107.57 Aligned_cols=210 Identities=17% Similarity=0.283 Sum_probs=144.7
Q ss_pred eeecCCCCCeEEEEECCC-CCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEE
Q 001352 391 ALVRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 469 (1093)
Q Consensus 391 ~~~~~h~~~V~~v~~s~d-g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~ 469 (1093)
.++.||+..|+.+.|.|. -..||+++.|..+..||+.+.. +.+.....-......++|+.... .+...+..+.|.
T Consensus 108 f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~--~p~ys~~~w~s~asqVkwnyk~p--~vlasshg~~i~ 183 (1081)
T KOG0309|consen 108 FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH--RPFYSTSSWRSAASQVKWNYKDP--NVLASSHGNDIF 183 (1081)
T ss_pred EEEecCccceeccccCCCCCcceeeccccccceeeeccCCC--cceeeeecccccCceeeecccCc--chhhhccCCceE
Confidence 458899999999999995 5688999999999999999865 33333444445677899987666 355566677899
Q ss_pred EEECCCC-ceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEec-CCCCceEEEEEccCCCEEEE
Q 001352 470 VWDAVTG-SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-APGLGCTRMAYSANGRRLFS 547 (1093)
Q Consensus 470 vwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~~ 547 (1093)
+||...| .++..+++|...|+.+.|..... ..+.+.+.||+|+.||.+......... ....++..-.+.|-|.-...
T Consensus 184 vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~ 262 (1081)
T KOG0309|consen 184 VWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCI 262 (1081)
T ss_pred EEeccCCCcceEEecccceeeehHHHhhhhh-hhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEe
Confidence 9999876 56788999999999998754322 368899999999999988655433222 23335555566665543332
Q ss_pred EecCCCCceeEEE---------EeCCC-CeeeeeeecccccCCCeEEEEEcCC----------CCEEEEEeCCCcEEEEE
Q 001352 548 CGTSKEGESFLVE---------WNESE-GAIKRTYQGLQLQHNSVSVVHFDTA----------KDQILAAGDDHVIKIWD 607 (1093)
Q Consensus 548 ~~~~~~~~~~i~i---------wd~~~-~~~~~~~~~~~~~~~~v~~v~~~~~----------~~~l~~~~~dg~i~iwd 607 (1093)
--.. |...+.+ |+..+ .+.+..|.||. +.|....|-.. .-+|++-+.|.++++|-
T Consensus 263 mp~~--G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~---D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWp 337 (1081)
T KOG0309|consen 263 MPMV--GGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHD---DVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWP 337 (1081)
T ss_pred cccc--CCeeeeeccccchhhhhccccCCcceeeecCcc---hHHHHHhhhhcccccCCCCccceeEEEeecCCceEeee
Confidence 2111 1223333 34333 35788899988 55554444322 23689999999999998
Q ss_pred CCC
Q 001352 608 MNK 610 (1093)
Q Consensus 608 ~~~ 610 (1093)
+.+
T Consensus 338 I~~ 340 (1081)
T KOG0309|consen 338 IDS 340 (1081)
T ss_pred ccH
Confidence 764
No 292
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.81 E-value=7.3e-06 Score=92.61 Aligned_cols=219 Identities=10% Similarity=0.059 Sum_probs=126.2
Q ss_pred CCEEEEEeCCeEEEEEccCceeEEEECCCCCC-----eEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccC-
Q 001352 815 DAYLFSASGGVISLYIVMTFKTILTIMPPSPT-----ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK- 888 (1093)
Q Consensus 815 g~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~-----i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~- 888 (1093)
+..++...++.+..+|.++|+.+......... ..+.... ++ .++.++.+|.+..+|..+|+.+........
T Consensus 161 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~ 237 (394)
T PRK11138 161 GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPT 237 (394)
T ss_pred CEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCC
Confidence 33333334577777787777777666532111 0111222 23 466678899999999999987665431100
Q ss_pred ------CeEEEEEeC--CCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCCeE
Q 001352 889 ------RVTGLVFSD--ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHL 960 (1093)
Q Consensus 889 ------~V~~l~~s~--dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i 960 (1093)
....+.-+| .+..+..++.+|.+.-+|..+++..-.. ..+. ...+.. .++...+...++.+
T Consensus 238 ~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~----~~~~------~~~~~~-~~~~vy~~~~~g~l 306 (394)
T PRK11138 238 GATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR----EYGS------VNDFAV-DGGRIYLVDQNDRV 306 (394)
T ss_pred CccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEee----cCCC------ccCcEE-ECCEEEEEcCCCeE
Confidence 011111122 2456767778999999999987643211 1111 111221 23444444778999
Q ss_pred EEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeC
Q 001352 961 AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAH 1040 (1093)
Q Consensus 961 ~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 1040 (1093)
..+|..+|+.+-...........+... .+.+|+.++.||.+...|..+|+.+.+..... ..+.+--+ ..
T Consensus 307 ~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~--------~~~~s~P~-~~ 375 (394)
T PRK11138 307 YALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDS--------SGFLSEPV-VA 375 (394)
T ss_pred EEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC--------CcceeCCE-EE
Confidence 999999998654322111111222222 24567778999999999999999988775211 11111001 11
Q ss_pred CCCCCEEEEEeCCCcEEEEec
Q 001352 1041 PLKPTQFAVGLTNGEVYVIEP 1061 (1093)
Q Consensus 1041 p~d~~~l~~~~~dg~v~~w~~ 1061 (1093)
+..|.+++.||.|+.++.
T Consensus 376 ---~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 376 ---DDKLLIQARDGTVYAITR 393 (394)
T ss_pred ---CCEEEEEeCCceEEEEeC
Confidence 357999999999999876
No 293
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.80 E-value=5.7e-07 Score=86.74 Aligned_cols=148 Identities=11% Similarity=-0.041 Sum_probs=108.3
Q ss_pred eEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCcee
Q 001352 400 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 479 (1093)
Q Consensus 400 V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~ 479 (1093)
+.++++|+|++++++.+....|..|.+...............++.=.+.+|+.... .+|++..||++.|||++.-...
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~--~FAv~~Qdg~~~I~DVR~~~tp 238 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL--QFAVVFQDGTCAIYDVRNMATP 238 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc--eEEEEecCCcEEEEEecccccc
Confidence 88999999999999999999999999876543322223444555667889998887 7999999999999999865443
Q ss_pred EE-----eecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC--------ceEEEEEccCCCEEE
Q 001352 480 YS-----FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL--------GCTRMAYSANGRRLF 546 (1093)
Q Consensus 480 ~~-----~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--------~v~~~~~s~d~~~l~ 546 (1093)
.. -..|.+.++.+.|++.+--.+|+..-.-+.+++.|+++......+..... .+....|+.++..+.
T Consensus 239 m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~ 318 (344)
T KOG4532|consen 239 MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESND 318 (344)
T ss_pred hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccc
Confidence 22 24589999999998765556777777778999999998776554333221 255566666665555
Q ss_pred EEe
Q 001352 547 SCG 549 (1093)
Q Consensus 547 ~~~ 549 (1093)
+..
T Consensus 319 v~~ 321 (344)
T KOG4532|consen 319 VKN 321 (344)
T ss_pred ccc
Confidence 443
No 294
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.79 E-value=8e-06 Score=83.69 Aligned_cols=204 Identities=15% Similarity=0.106 Sum_probs=139.6
Q ss_pred EEEEcc-CCCEEEEEe-C-CeEEEEEccCceeEEEECCCCCCe--EEEEEcCCCCCEEEEEeC-----CCeEEEEEcC-C
Q 001352 808 CFALSK-NDAYLFSAS-G-GVISLYIVMTFKTILTIMPPSPTA--TSLAFNPHDNNVIAIGMD-----DSTILIYNAR-S 876 (1093)
Q Consensus 808 ~l~~s~-dg~~la~~~-d-g~i~iwd~~~~~~~~~~~~~~~~i--~~l~~s~~d~~~lasg~~-----dg~i~iwd~~-~ 876 (1093)
.++.+| +...++.+- - ....+||..+++....+....+.- -.-+||+ ||++|++.-. .|.|-|||.. +
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~~~~ 87 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDAARG 87 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEECcCC
Confidence 678888 556666665 3 458899999999998887655433 3578999 8999988543 4799999999 6
Q ss_pred cceeeecccccCCeEEEEEeCCCCEEEEEe------------------CCCcEEEEeCCCCceeeeeeeecCCCcccCCC
Q 001352 877 SEVISKLEGHSKRVTGLVFSDALNILVSSG------------------GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAP 938 (1093)
Q Consensus 877 ~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 938 (1093)
.+.+..+..|.-.--.+.+.|||+.|+.+- .+-.+..-|..+++......+.. ..+. .
T Consensus 88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~-~~~~---l 163 (305)
T PF07433_consen 88 YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP-DLHQ---L 163 (305)
T ss_pred cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCc-cccc---c
Confidence 677888887776677789999998887752 12235555666666444222211 1122 2
Q ss_pred CceEEEEccCCCEEEEE-eCC-------eEEEEEcCCcceeeeeec------CCCCCEEEEEEccCCCEEE-EEeCCCcE
Q 001352 939 SETHIQFHKDQTRFLLV-HET-------HLAIYEAEELTCLKQWFP------ISSVPISQATFSCDCRMVF-TSFVDGTL 1003 (1093)
Q Consensus 939 ~v~~~~~s~dg~~l~~~-~d~-------~i~vwd~~~~~~~~~~~~------~h~~~v~~~~fs~dg~~l~-t~~~dg~v 1003 (1093)
++..+++.++|..++.. ..+ -|.+++... .+..+.. .-...+-+|+++++|.+++ |+-.-+.+
T Consensus 164 SiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~ 241 (305)
T PF07433_consen 164 SIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRV 241 (305)
T ss_pred ceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEE
Confidence 69999999999987763 111 244444332 2221111 1157899999999998775 55566889
Q ss_pred EEEEcCCCceEEEec
Q 001352 1004 SIHEASNLEVQCRIL 1018 (1093)
Q Consensus 1004 ~vwd~~~~~~~~~~~ 1018 (1093)
.+||..+++++....
T Consensus 242 ~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 242 AVWDAATGRLLGSVP 256 (305)
T ss_pred EEEECCCCCEeeccc
Confidence 999999999986655
No 295
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.79 E-value=8.7e-07 Score=98.43 Aligned_cols=339 Identities=14% Similarity=0.108 Sum_probs=187.1
Q ss_pred eEEEEECCCCCEEEEEE----cCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCC
Q 001352 400 VNRVVWSPDGSLLGVAY----SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 475 (1093)
Q Consensus 400 V~~v~~s~dg~~las~~----~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~ 475 (1093)
-+-..|+|...++|+++ ..|.|.||- ++|+..+.. +..- .+++++|+|..- +|+.|=.-|.+.+|...+
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V-t~P~---hatSLCWHpe~~--vLa~gwe~g~~~v~~~~~ 90 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV-TYPV---HATSLCWHPEEF--VLAQGWEMGVSDVQKTNT 90 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc-ccce---ehhhhccChHHH--HHhhccccceeEEEecCC
Confidence 34467999999998885 357788884 445533321 2222 356799999866 788888899999999877
Q ss_pred CceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC--C--CC--ceEEEEEccCCCEEE---
Q 001352 476 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA--P--GL--GCTRMAYSANGRRLF--- 546 (1093)
Q Consensus 476 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~--~~--~v~~~~~s~d~~~l~--- 546 (1093)
.+.......|..+|..+.|+ ++|..++++..-|.|.+|..+-.+....... | +. ...+...++++.-++
T Consensus 91 ~e~htv~~th~a~i~~l~wS--~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~la 168 (1416)
T KOG3617|consen 91 TETHTVVETHPAPIQGLDWS--HDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLA 168 (1416)
T ss_pred ceeeeeccCCCCCceeEEec--CCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhh
Confidence 77666667899999999995 5678999999999999998875444332221 1 11 223444566643221
Q ss_pred EEecCCCCceeEE-EEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCC
Q 001352 547 SCGTSKEGESFLV-EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE 625 (1093)
Q Consensus 547 ~~~~~~~~~~~i~-iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 625 (1093)
-+...+|.. -+- .++.+.....+.. . -.-.|+|..++.++.+|+|+-.|- +|++.........
T Consensus 169 KaaVtgDe~-alD~~fnwk~~~a~rs~----------~-ksgv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~dS~--- 232 (1416)
T KOG3617|consen 169 KAAVTGDES-ALDEPFNWKESLAERSD----------E-KSGVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLDSE--- 232 (1416)
T ss_pred hhhccCchh-hhcccccCccchhhccc----------c-ccCCCCCcEEEEEcCCceEEEEcC-CCcEEEEEEccch---
Confidence 111111111 111 1111110000000 0 012467888999999999988774 5566555554322
Q ss_pred CceEEEecCCCEEEEEECCCeEEEEEcC-CCceeeecccccccceeeeecCCCceeeeeccCCceEecCCC-CCCCccce
Q 001352 626 NPRICFNKNGTLLAVIANENRIKILETP-ESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDP-KEDVKPEI 703 (1093)
Q Consensus 626 v~~v~~s~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~d~~~l~ 703 (1093)
..+-|.+...-+++...+-++.++-.. ++.. ..+..+.. .+.. ...|. ++
T Consensus 233 -vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~--------ee~~~vk~------------------sgk~GgrqGg-iA 284 (1416)
T KOG3617|consen 233 -VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTS--------EERCAVKV------------------SGKLGGRQGG-IA 284 (1416)
T ss_pred -HHHHHhcccceEEEEeeeceeeEEEecCCCch--------HHhhhhhh------------------ccccCCccCc-cc
Confidence 234555544445555444444444332 1111 00000000 0000 00111 33
Q ss_pred eecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcc
Q 001352 704 SVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRL 783 (1093)
Q Consensus 704 s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~ 783 (1093)
.+...|.++- ..... ......+.+++++..+..+.++...|.+.+|.-....+ ....++.+
T Consensus 285 ~sEssGvLr~--------~eKyg-----~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f------~g~p~~d~ 345 (1416)
T KOG3617|consen 285 CSESSGVLRK--------SEKYG-----LELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGF------QGDPTIDV 345 (1416)
T ss_pred cccccccccC--------Ccchh-----hhcCCceEEEEEeccceEEEecccCCcEEEeeecCccc------cCCCCcce
Confidence 3322231110 00011 12456799999999999999999999999996433222 11223445
Q ss_pred cCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEE
Q 001352 784 YQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFS 820 (1093)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~ 820 (1093)
|.+.+.. ...+.|+.+.|.|-...+++
T Consensus 346 w~l~~~~----------e~~g~I~~i~Wg~~k~~~av 372 (1416)
T KOG3617|consen 346 WTLNGKR----------ESLGKISLIRWGPIKSTAAV 372 (1416)
T ss_pred EEecCch----------hhccceEEEEeccccchhhh
Confidence 5544332 24556777777775544444
No 296
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.79 E-value=7.1e-08 Score=98.79 Aligned_cols=165 Identities=20% Similarity=0.157 Sum_probs=115.0
Q ss_pred CceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEE-
Q 001352 337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA- 415 (1093)
Q Consensus 337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~- 415 (1093)
.++.+..+|+++ ++|++..+....++++...... .+.++.. .-...-+++.|-.+......+
T Consensus 64 a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~~----~kl~~~~------------~v~~~~~ai~~~~~~~sv~v~d 126 (390)
T KOG3914|consen 64 APALVLTSDSGR-LVAVATSSKQRAVFDYRENPKG----AKLLDVS------------CVPKRPTAISFIREDTSVLVAD 126 (390)
T ss_pred cccccccCCCce-EEEEEeCCCceEEEEEecCCCc----ceeeeEe------------ecccCcceeeeeeccceEEEEe
Confidence 556677888887 6888888887777776554320 1111110 011223344444455555444
Q ss_pred --EcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEe-ecCCCCeEEe
Q 001352 416 --YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSL 492 (1093)
Q Consensus 416 --~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-~~h~~~v~~~ 492 (1093)
+....+.+|....+.+. .+-||-..+++++|+||++ +++|+..|..|+|-....-..+..+ -||...|..+
T Consensus 127 kagD~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~i 200 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTI 200 (390)
T ss_pred ecCCceeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeee
Confidence 44455666666654332 3558999999999999998 8999999999999887766666655 5799999999
Q ss_pred eecccCCccEEEEEecCCeEEEEEcCCCCceEEec
Q 001352 493 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD 527 (1093)
Q Consensus 493 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 527 (1093)
+.. ++..|+++|.|+++++||+.+++....+.
T Consensus 201 sl~---~~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 201 SLT---DNYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred eec---cCceeeecCCCCcEEEEecccCCcccccc
Confidence 874 33579999999999999999988775544
No 297
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.77 E-value=7.4e-06 Score=81.04 Aligned_cols=248 Identities=11% Similarity=0.115 Sum_probs=135.6
Q ss_pred eeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcC
Q 001352 339 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 418 (1093)
Q Consensus 339 ~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d 418 (1093)
|.++.++||+ +||.- .|..|.|=.....-....... .+.+...-.-..++||||+.+||.+...
T Consensus 1 W~~~~~~~Gk-~lAi~-qd~~iEiRsa~Ddf~si~~kc--------------qVpkD~~PQWRkl~WSpD~tlLa~a~S~ 64 (282)
T PF15492_consen 1 WHLALSSDGK-LLAIL-QDQCIEIRSAKDDFSSIIGKC--------------QVPKDPNPQWRKLAWSPDCTLLAYAEST 64 (282)
T ss_pred CceeecCCCc-EEEEE-eccEEEEEeccCCchheeEEE--------------ecCCCCCchheEEEECCCCcEEEEEcCC
Confidence 4578889998 56653 556677666544321111111 1123344456789999999999999999
Q ss_pred CEEEEEEccCCCcccc--eEEec-cccccEEEEEeeCCC-----CcEEEEEEcCCCcEEEEECCC-----CceeEEeec-
Q 001352 419 HIVQLYAYHGGSDARQ--QLEID-AHVGNVNDLAFSAPC-----KQISVITCGDDKTIKVWDAVT-----GSRTYSFEG- 484 (1093)
Q Consensus 419 ~~i~iwd~~~~~~~~~--~~~~~-~h~~~v~~~~~s~d~-----~~l~l~s~~~d~~i~vwd~~~-----~~~~~~~~~- 484 (1093)
|+|+++|+........ ..... .-...|..+.|.+-. .. .|+.-..+|.++=|-+.. .+..+++..
T Consensus 65 G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~-ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~ 143 (282)
T PF15492_consen 65 GTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSY-ELLVINYRGQLRSYLVSVGTNQGYQENHSFSFS 143 (282)
T ss_pred CeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccce-eEEEEeccceeeeEEEEcccCCcceeeEEEEec
Confidence 9999999987443210 00011 123467777775432 11 345556677777665432 234444432
Q ss_pred --CCCCeEEeeecccCCccEEEEEec-CCeEEEEEcCCCCceEEecCCCCceEEEEE---ccCCCEEEEEecCCC--Cce
Q 001352 485 --HGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYDSLGARVDYDAPGLGCTRMAY---SANGRRLFSCGTSKE--GES 556 (1093)
Q Consensus 485 --h~~~v~~~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~---s~d~~~l~~~~~~~~--~~~ 556 (1093)
+...|.++.+++.. ++|+.|+. ...-..+ ......+++-.. +|..+.+.. ..+.- ...
T Consensus 144 ~~yp~Gi~~~vy~p~h--~LLlVgG~~~~~~~~s-----------~a~~~GLtaWRiL~~~Pyyk~v~~-~~~~~~~~~~ 209 (282)
T PF15492_consen 144 SHYPHGINSAVYHPKH--RLLLVGGCEQNQDGMS-----------KASSCGLTAWRILSDSPYYKQVTS-SEDDITASSK 209 (282)
T ss_pred ccCCCceeEEEEcCCC--CEEEEeccCCCCCccc-----------cccccCceEEEEcCCCCcEEEccc-cCcccccccc
Confidence 46789999997654 45555543 2210000 001111111111 111111111 10000 000
Q ss_pred eEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecC
Q 001352 557 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 620 (1093)
Q Consensus 557 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 620 (1093)
+..+|.+-+.+. +.........|..|..+|||..|++...+|.|.+|++.+-++......+
T Consensus 210 ~~~~~~~~~~~~---fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 210 RRGLLRIPSFKF---FSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred ccceeeccceee---eeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 112333222211 1111122468999999999999999999999999999988777666544
No 298
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.76 E-value=1.2e-07 Score=92.88 Aligned_cols=258 Identities=13% Similarity=0.199 Sum_probs=163.3
Q ss_pred CCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCce-----eEEEECCCCC------------CeEEEEEcCCC-CCEEEE
Q 001352 802 SQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFK-----TILTIMPPSP------------TATSLAFNPHD-NNVIAI 862 (1093)
Q Consensus 802 ~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~-----~~~~~~~~~~------------~i~~l~~s~~d-~~~las 862 (1093)
....|+++.|...|.||++|. +|+|.+|.-+... ....++.|.. .|..+.|..+. ...+..
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 567899999999999999998 5889998765432 2223455542 35666665422 335556
Q ss_pred EeCCCeEEEEEcCCcce-------------------------------------e-----eec-ccccCCeEEEEEeCCC
Q 001352 863 GMDDSTILIYNARSSEV-------------------------------------I-----SKL-EGHSKRVTGLVFSDAL 899 (1093)
Q Consensus 863 g~~dg~i~iwd~~~~~~-------------------------------------~-----~~l-~~h~~~V~~l~~s~dg 899 (1093)
.+.|.+|++|.+..... + +.. ..|.-.|.++.|..|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 77899999998743200 0 001 3577778899999998
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeeeeeeec-CCCcccCCCCceEEEEccCCCEEEE--EeCCeEEEEEcCCccee-----
Q 001352 900 NILVSSGGDAQIFVWDVDGWGIQTCRSLQT-PDGVMTLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTCL----- 971 (1093)
Q Consensus 900 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~dg~~l~~--~~d~~i~vwd~~~~~~~----- 971 (1093)
..++++ .|-.|.+|+++-....- ..+.. +.........|++..|+|....+.. ++.|.|++-|+......
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sF-nIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSF-NIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred heeeec-cceeeeeccccccCCce-EEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 888875 46669999987532111 11111 1111111135788999998766655 67899999998733211
Q ss_pred --ee--------eecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc-eEEEeccccc----cCCCCCCCccce-e
Q 001352 972 --KQ--------WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE-VQCRILSTAY----LRPTTSCLHVYP-H 1035 (1093)
Q Consensus 972 --~~--------~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~-~~~~~~~~~~----~~~~~~~~~v~~-~ 1035 (1093)
.. ++.+-...|..+.||++|+++++-+. -+|.+||+...+ ++.++..+.. +...+..+.|+. .
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkF 341 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKF 341 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeE
Confidence 00 11112567889999999999997765 589999997753 3444422211 111123444554 6
Q ss_pred EEEeCCCCCCEEEEEeCCCcEEEEecCC
Q 001352 1036 AIAAHPLKPTQFAVGLTNGEVYVIEPNE 1063 (1093)
Q Consensus 1036 ~~~~~p~d~~~l~~~~~dg~v~~w~~~~ 1063 (1093)
.+.|+.+ ...+++|+..+...++-...
T Consensus 342 eisfSgd-~~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 342 EISFSGD-DKHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred EEEecCC-cccccccccccceeeecccc
Confidence 6788874 56778887777766666433
No 299
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.71 E-value=1.6e-07 Score=96.33 Aligned_cols=159 Identities=9% Similarity=0.079 Sum_probs=113.2
Q ss_pred EEEEEcCCCCCEEEEEeCCCeEEEEEcCCcce----eeecccccCCeEEEEEeCCCCEE---EEEeCCCcEEEEeCCCCc
Q 001352 848 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEV----ISKLEGHSKRVTGLVFSDALNIL---VSSGGDAQIFVWDVDGWG 920 (1093)
Q Consensus 848 ~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~----~~~l~~h~~~V~~l~~s~dg~~l---~s~s~dg~i~iwd~~~~~ 920 (1093)
..+..++ ++++||++..+....++++..... +..... ...-+++.|..+.... ..++....+.+|....+.
T Consensus 66 ~~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 66 ALVLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred cccccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 3445666 888999888888877777764332 222221 1222334444333333 344556667777766422
Q ss_pred eeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeC
Q 001352 921 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFV 999 (1093)
Q Consensus 921 ~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~ 999 (1093)
....-||.. .++.+++|||+++|+++ .|+.|+|-....--.+..+..||..-|..++.-++ ..|+++|.
T Consensus 144 ------~~~~lGhvS---ml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sG 213 (390)
T KOG3914|consen 144 ------CEPILGHVS---MLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSG 213 (390)
T ss_pred ------cchhhhhhh---hhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCC
Confidence 223345554 69999999999999996 78899999998888888888999999999997654 56999999
Q ss_pred CCcEEEEEcCCCceEEEec
Q 001352 1000 DGTLSIHEASNLEVQCRIL 1018 (1093)
Q Consensus 1000 dg~v~vwd~~~~~~~~~~~ 1018 (1093)
|++|++||+.+|+.+..+.
T Consensus 214 D~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 214 DKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred CCcEEEEecccCCcccccc
Confidence 9999999999999987665
No 300
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.71 E-value=1.3e-08 Score=112.89 Aligned_cols=215 Identities=16% Similarity=0.252 Sum_probs=158.3
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcC--CCcEEE
Q 001352 393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--DKTIKV 470 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~--d~~i~v 470 (1093)
+..|...-+|++||-+.+.|++|+..|.|+++++.+|.... ...+|..+|+.+.=+.||.. +++.+. .--..+
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~--~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGST--QLTSSSSSSPLSAL 1171 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcce--eeeeccccCchHHH
Confidence 67789999999999999999999999999999999997655 67799999999999999994 444332 225789
Q ss_pred EECC-CCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC----CCceEEEEEccCCCEE
Q 001352 471 WDAV-TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP----GLGCTRMAYSANGRRL 545 (1093)
Q Consensus 471 wd~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~----~~~v~~~~~s~d~~~l 545 (1093)
|++. ++...++|.+. .++.|+.+ ...-+.|.......+||+++.....++-.. ...-....|+|+..++
T Consensus 1172 W~~~s~~~~~Hsf~ed----~~vkFsn~--~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDED----KAVKFSNS--LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred hccccccCcccccccc----ceeehhhh--HHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence 9976 45666666532 34455433 233445555567889999998876653221 1133678899999888
Q ss_pred EEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCC
Q 001352 546 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE 625 (1093)
Q Consensus 546 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 625 (1093)
+--+ .+||.+..+.++.|.... .. ..-.|+|.|..++.-++ |||+++.+++...+.-.
T Consensus 1246 lndG---------vLWDvR~~~aIh~FD~ft---~~-~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld---- 1303 (1516)
T KOG1832|consen 1246 LNDG---------VLWDVRIPEAIHRFDQFT---DY-GGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD---- 1303 (1516)
T ss_pred eeCc---------eeeeeccHHHHhhhhhhe---ec-ccccccCCCceEEeech-----hhhhHHHHHHhcCcccc----
Confidence 7532 589999988888876654 22 23369999999999764 99999999887776432
Q ss_pred CceEEEecCCCEEEE
Q 001352 626 NPRICFNKNGTLLAV 640 (1093)
Q Consensus 626 v~~v~~s~~~~~l~~ 640 (1093)
-..+.|+..|..++.
T Consensus 1304 qc~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1304 QCAVTFNSTGDVMYA 1318 (1516)
T ss_pred ceEEEeccCccchhh
Confidence 356888888876654
No 301
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.70 E-value=1.8e-05 Score=89.37 Aligned_cols=153 Identities=19% Similarity=0.115 Sum_probs=93.1
Q ss_pred EEEEEcCCCcEEEEECCCCceeEEeecCCC--CeE-----EeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC
Q 001352 458 SVITCGDDKTIKVWDAVTGSRTYSFEGHGA--PVY-----SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG 530 (1093)
Q Consensus 458 ~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~--~v~-----~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 530 (1093)
.++.++.++.+.-+|.++|+.+.+...... ... .+.-.+.-++..++.++.+|.+..+|.++++.........
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 150 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG 150 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence 467777788999999999998876543220 000 0000011123467788899999999999999888776544
Q ss_pred CceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccC--CCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001352 531 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAGDDHVIKIWDM 608 (1093)
Q Consensus 531 ~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~--~~v~~v~~~~~~~~l~~~~~dg~i~iwd~ 608 (1093)
....+..+ .++ .++++.. ++.++.+|..+|+.+-.+....... ....+... .+..++.++.+|.+..+|.
T Consensus 151 ~~~ssP~v-~~~-~v~v~~~----~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 151 EALSRPVV-SDG-LVLVHTS----NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLM 222 (394)
T ss_pred ceecCCEE-ECC-EEEEECC----CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEc
Confidence 22111122 134 4444432 5679999999999876665421000 00011111 1345777888999999999
Q ss_pred CCCceEEEEe
Q 001352 609 NKVQLLTTID 618 (1093)
Q Consensus 609 ~~~~~~~~~~ 618 (1093)
.+|+.+....
T Consensus 223 ~~G~~~W~~~ 232 (394)
T PRK11138 223 EQGQLIWQQR 232 (394)
T ss_pred cCChhhheec
Confidence 9988766543
No 302
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.70 E-value=5.1e-06 Score=87.00 Aligned_cols=223 Identities=13% Similarity=0.123 Sum_probs=138.8
Q ss_pred CCeEEEEEccCceeEEEECCC--CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCC
Q 001352 823 GGVISLYIVMTFKTILTIMPP--SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN 900 (1093)
Q Consensus 823 dg~i~iwd~~~~~~~~~~~~~--~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~ 900 (1093)
+|+|..||..+|+.+...... .....+..+. ++..+++++.++.++.||..+|+.+.+... .+.+.... ..++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVP--DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE--ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEE--eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccc
Confidence 578999999999998887542 1222222332 345677778999999999999998877664 22222211 22455
Q ss_pred EEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcCCcceeeeeecCCC
Q 001352 901 ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISS 979 (1093)
Q Consensus 901 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~vwd~~~~~~~~~~~~~h~ 979 (1093)
.++.++.++.|..+|..+++..-.......+... .........++..++++ .++.|..+|+.+|+.+........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG----VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS----TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccc----cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence 6677778889999999998754431111111100 12223333347777775 589999999999998777544221
Q ss_pred C---------CEEEEEEccCCCEEEEEeCCCc-EEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEE
Q 001352 980 V---------PISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAV 1049 (1093)
Q Consensus 980 ~---------~v~~~~fs~dg~~l~t~~~dg~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~ 1049 (1093)
. .+..-....++ .++.++.++. +.+ |+.+++.+.+.. ... ... ...+ ++..|++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-----~~~-----~~~---~~~~-~~~~l~~ 217 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-----ISG-----IYS---LPSV-DGGTLYV 217 (238)
T ss_dssp -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-----SS------ECE---CEEC-CCTEEEE
T ss_pred CCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-----CCC-----ccC---Ccee-eCCEEEE
Confidence 1 11222233355 6777777886 555 999998663221 111 111 1223 3677888
Q ss_pred EeCCCcEEEEecCCCCCCcc
Q 001352 1050 GLTNGEVYVIEPNEPGDTWA 1069 (1093)
Q Consensus 1050 ~~~dg~v~~w~~~~~~~~~~ 1069 (1093)
++.++.|+.||+...+..|.
T Consensus 218 ~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 218 TSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EETTTEEEEEETTTTEEEEE
T ss_pred EeCCCEEEEEECCCCCEEeE
Confidence 88999999999998887775
No 303
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.69 E-value=1.4e-05 Score=82.75 Aligned_cols=205 Identities=16% Similarity=0.201 Sum_probs=133.2
Q ss_pred EEEEccCCCEEEEEe---CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcC-Ccceeee-
Q 001352 808 CFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR-SSEVISK- 882 (1093)
Q Consensus 808 ~l~~s~dg~~la~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~-~~~~~~~- 882 (1093)
.+++|.||+++.+.. ...|.|.|+..++.+..+..+. .. +.+ |...+-+.+-|.||++.-..+. .|+...+
T Consensus 99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG-C~--~iy-P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~ 174 (342)
T PF06433_consen 99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG-CW--LIY-PSGNRGFSMLCGDGSLLTVTLDADGKEAQKS 174 (342)
T ss_dssp GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS-EE--EEE-EEETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC-EE--EEE-ecCCCceEEEecCCceEEEEECCCCCEeEee
Confidence 457888998888876 3679999999999988876332 11 122 2234567788999999998887 4554322
Q ss_pred ---cccccCCe-EEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcc---c-CCCCceEEEEccCCCEEEE
Q 001352 883 ---LEGHSKRV-TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM---T-LAPSETHIQFHKDQTRFLL 954 (1093)
Q Consensus 883 ---l~~h~~~V-~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~-~~~~v~~~~~s~dg~~l~~ 954 (1093)
|..-..++ ..-+++..+..++-.+..|.|+--|+.................. . -.+.-.-+++++....|.+
T Consensus 175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv 254 (342)
T PF06433_consen 175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV 254 (342)
T ss_dssp EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence 22222222 34455666666776889999999999887655544444332110 0 0134567899887766665
Q ss_pred ----EeCC-------eEEEEEcCCcceeeeeecCCCCCEEEEEEccCCC-EEEEE-eCCCcEEEEEcCCCceEEEec
Q 001352 955 ----VHET-------HLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTS-FVDGTLSIHEASNLEVQCRIL 1018 (1093)
Q Consensus 955 ----~~d~-------~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~-~l~t~-~~dg~v~vwd~~~~~~~~~~~ 1018 (1093)
+.++ .|.++|+.+++.+..+...| ++.++..|.|.+ +|++. ..++.+.+||..+|+.++++.
T Consensus 255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~--~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH--PIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE--EESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC--ccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 2222 48889999999999876543 577999999887 55444 457899999999999998887
No 304
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.69 E-value=1.9e-07 Score=102.13 Aligned_cols=294 Identities=13% Similarity=0.153 Sum_probs=187.3
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCC-cccceEEecccc--ccEEEEEeeCCCCcE-EEEEEcCCCcEEEEE
Q 001352 397 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS-DARQQLEIDAHV--GNVNDLAFSAPCKQI-SVITCGDDKTIKVWD 472 (1093)
Q Consensus 397 ~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~-~~~~~~~~~~h~--~~v~~~~~s~d~~~l-~l~s~~~d~~i~vwd 472 (1093)
.+++.++..+|.|+-+|.++.-| +.+-|+...- ..+ -+ .|. -.|-.+.|++...+. .+|+.+. ..-.+|+
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr---~l-~h~tpw~vad~qws~h~a~~~wiVsts~-qkaiiwn 97 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPR---WL-HHITPWQVADVQWSPHPAKPYWIVSTSN-QKAIIWN 97 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCce---ee-eccCcchhcceecccCCCCceeEEecCc-chhhhhh
Confidence 46788999999999999999888 6666776432 222 11 232 246778898875432 4555554 4456898
Q ss_pred CCCC---ceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceE-EecCCCCceEEEEEccC-CCEEEE
Q 001352 473 AVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSAN-GRRLFS 547 (1093)
Q Consensus 473 ~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~s~d-~~~l~~ 547 (1093)
+... ..-..+.+|...|+.+-|++.. ...+++++.|-.++.||+++..... ....-......+.|+-. +..+++
T Consensus 98 lA~ss~~aIef~lhghsraitd~n~~~q~-pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlas 176 (1081)
T KOG0309|consen 98 LAKSSSNAIEFVLHGHSRAITDINFNPQH-PDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLAS 176 (1081)
T ss_pred hhcCCccceEEEEecCccceeccccCCCC-CcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhh
Confidence 7643 3345677899999999998763 3589999999999999999866544 33444445667888764 444444
Q ss_pred EecCCCCceeEEEEeCCCC-eeeeeeecccccCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCC
Q 001352 548 CGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE 625 (1093)
Q Consensus 548 ~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 625 (1093)
. . ...|.+||.+.| .++..+++|. ..+..+.|..- ...+.+.+.||+|+.||.............. ..+
T Consensus 177 s-h----g~~i~vwd~r~gs~pl~s~K~~v---s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt-~~p 247 (1081)
T KOG0309|consen 177 S-H----GNDIFVWDLRKGSTPLCSLKGHV---SSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTT-NFP 247 (1081)
T ss_pred c-c----CCceEEEeccCCCcceEEecccc---eeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccc-cCc
Confidence 3 3 234999999865 4566777766 77888887653 3467889999999999987543322211111 123
Q ss_pred CceEEEecCCC--EEEEEECCCeEEE---------EEcCC-CceeeecccccccceeeeecCCCceeeeeccCCceEecC
Q 001352 626 NPRICFNKNGT--LLAVIANENRIKI---------LETPE-SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE 693 (1093)
Q Consensus 626 v~~v~~s~~~~--~l~~~~~dg~i~i---------w~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1093)
+..-.+-|-|. .+.-.-.+..+.+ |+..+ .+++..+.||.+.|....|-...... +
T Consensus 248 iw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~------------~ 315 (1081)
T KOG0309|consen 248 IWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECD------------G 315 (1081)
T ss_pred ceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhccccc------------C
Confidence 44445555332 2221111223333 33332 36778888998888766665332211 1
Q ss_pred CCCCCCccceeecccccceecceee
Q 001352 694 DPKEDVKPEISVEAENKSEVEKPLF 718 (1093)
Q Consensus 694 ~~s~d~~~l~s~~~d~~i~~w~~~~ 718 (1093)
+.....-.|++-+.|.++|+|.+..
T Consensus 316 d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 316 DYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred CCCccceeEEEeecCCceEeeeccH
Confidence 1112233588999999999998753
No 305
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.67 E-value=3.7e-05 Score=80.67 Aligned_cols=221 Identities=14% Similarity=0.135 Sum_probs=139.1
Q ss_pred EEEeec-CCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEc-cCCCE
Q 001352 740 RLTYNN-GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS-KNDAY 817 (1093)
Q Consensus 740 ~l~~s~-~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s-~dg~~ 817 (1093)
+++|.+ ++.++++-...+.|..|+.... . .....+ .....+++. +++.+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~----------------------~-~~~~~~------~~~~G~~~~~~~g~l 54 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTG----------------------E-VEVIDL------PGPNGMAFDRPDGRL 54 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTT----------------------E-EEEEES------SSEEEEEEECTTSEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCC----------------------e-EEEEec------CCCceEEEEccCCEE
Confidence 567777 5665555555677777664332 2 111111 126677887 66555
Q ss_pred EEEEeCCeEEEEEccCceeEEEECC-----CCCCeEEEEEcCCCCCEEEEEeCC--------CeEEEEEcCCcceeeecc
Q 001352 818 LFSASGGVISLYIVMTFKTILTIMP-----PSPTATSLAFNPHDNNVIAIGMDD--------STILIYNARSSEVISKLE 884 (1093)
Q Consensus 818 la~~~dg~i~iwd~~~~~~~~~~~~-----~~~~i~~l~~s~~d~~~lasg~~d--------g~i~iwd~~~~~~~~~l~ 884 (1093)
+ ++..+.+.++|..+++....... .......+++.| +|++.++.... |.|..++.. ++......
T Consensus 55 ~-v~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~ 131 (246)
T PF08450_consen 55 Y-VADSGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD 131 (246)
T ss_dssp E-EEETTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE
T ss_pred E-EEEcCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeEEEEec
Confidence 4 45556666679988865443332 335678999999 88877776544 557777777 55433333
Q ss_pred cccCCeEEEEEeCCCCEEE-EEeCCCcEEEEeCCCCc--eeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE-eCCeE
Q 001352 885 GHSKRVTGLVFSDALNILV-SSGGDAQIFVWDVDGWG--IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHL 960 (1093)
Q Consensus 885 ~h~~~V~~l~~s~dg~~l~-s~s~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i 960 (1093)
.-.....++|+||++.|. +-+..+.|..++++... ......+....... +..-.+++..+|++.++. ..+.|
T Consensus 132 -~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---g~pDG~~vD~~G~l~va~~~~~~I 207 (246)
T PF08450_consen 132 -GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP---GYPDGLAVDSDGNLWVADWGGGRI 207 (246)
T ss_dssp -EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS---CEEEEEEEBTTS-EEEEEETTTEE
T ss_pred -CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCC---cCCCcceEcCCCCEEEEEcCCCEE
Confidence 345578999999998775 55677888888886432 22223332222221 136689999999988874 67899
Q ss_pred EEEEcCCcceeeeeecCCCCCEEEEEEc-cCCCEEEEEe
Q 001352 961 AIYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTSF 998 (1093)
Q Consensus 961 ~vwd~~~~~~~~~~~~~h~~~v~~~~fs-~dg~~l~t~~ 998 (1093)
.+++.. |+.+..+..+ ...+++++|. +|.+.|+..+
T Consensus 208 ~~~~p~-G~~~~~i~~p-~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 208 VVFDPD-GKLLREIELP-VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEETT-SCEEEEEE-S-SSSEEEEEEESTTSSEEEEEE
T ss_pred EEECCC-ccEEEEEcCC-CCCEEEEEEECCCCCEEEEEe
Confidence 999988 8888776655 4589999994 6666655443
No 306
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.65 E-value=5e-05 Score=79.64 Aligned_cols=221 Identities=17% Similarity=0.140 Sum_probs=143.8
Q ss_pred eeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEEC-CCCCEEEEEEc
Q 001352 339 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS-PDGSLLGVAYS 417 (1093)
Q Consensus 339 ~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-~dg~~las~~~ 417 (1093)
.++.|.+....|+++....+.|..|+..+++.... . . .....+++. +++ .|+.+..
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~--------------------~-~-~~~~G~~~~~~~g-~l~v~~~ 59 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVI--------------------D-L-PGPNGMAFDRPDG-RLYVADS 59 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE--------------------E-S-SSEEEEEEECTTS-EEEEEET
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEE--------------------e-c-CCCceEEEEccCC-EEEEEEc
Confidence 36789984434788887889999999998865431 1 1 126667777 665 4455555
Q ss_pred CCEEEEEEccCCCcccceEEec--c-ccccEEEEEeeCCCCcEEEEEEcCC--------CcEEEEECCCCceeEEeecCC
Q 001352 418 KHIVQLYAYHGGSDARQQLEID--A-HVGNVNDLAFSAPCKQISVITCGDD--------KTIKVWDAVTGSRTYSFEGHG 486 (1093)
Q Consensus 418 d~~i~iwd~~~~~~~~~~~~~~--~-h~~~v~~~~~s~d~~~l~l~s~~~d--------~~i~vwd~~~~~~~~~~~~h~ 486 (1093)
.+ +.++|..+++. ..+.... . .....+.+++.++|+ +.++.... |.|..++.. ++...... .-
T Consensus 60 ~~-~~~~d~~~g~~-~~~~~~~~~~~~~~~~ND~~vd~~G~--ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~ 133 (246)
T PF08450_consen 60 GG-IAVVDPDTGKV-TVLADLPDGGVPFNRPNDVAVDPDGN--LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GL 133 (246)
T ss_dssp TC-EEEEETTTTEE-EEEEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EE
T ss_pred Cc-eEEEecCCCcE-EEEeeccCCCcccCCCceEEEcCCCC--EEEEecCCCccccccccceEEECCC-CeEEEEec-Cc
Confidence 55 56669988753 3333332 2 446789999999999 56665433 457777766 55443333 34
Q ss_pred CCeEEeeecccCCccEE-EEEecCCeEEEEEcCCCCc----eEEe-cCCC--CceEEEEEccCCCEEEEEecCCCCceeE
Q 001352 487 APVYSLCPHAKENIHFI-FSISVDGKIKAWLYDSLGA----RVDY-DAPG--LGCTRMAYSANGRRLFSCGTSKEGESFL 558 (1093)
Q Consensus 487 ~~v~~~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~----~~~~-~~~~--~~v~~~~~s~d~~~l~~~~~~~~~~~~i 558 (1093)
...+.++|++ +++.| ++-+..+.|..++++.... ...+ .... +....+++..+|+..++... .+.|
T Consensus 134 ~~pNGi~~s~--dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~----~~~I 207 (246)
T PF08450_consen 134 GFPNGIAFSP--DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG----GGRI 207 (246)
T ss_dssp SSEEEEEEET--TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET----TTEE
T ss_pred ccccceEECC--cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC----CCEE
Confidence 5578888865 55555 5677888999999875443 1112 2222 34788999999988777553 5569
Q ss_pred EEEeCCCCeeeeeeecccccCCCeEEEEE-cCCCCEEEEEe
Q 001352 559 VEWNESEGAIKRTYQGLQLQHNSVSVVHF-DTAKDQILAAG 598 (1093)
Q Consensus 559 ~iwd~~~~~~~~~~~~~~~~~~~v~~v~~-~~~~~~l~~~~ 598 (1093)
.+++.. |+.+..+.... ..+++++| .++.+.|++.+
T Consensus 208 ~~~~p~-G~~~~~i~~p~---~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 208 VVFDPD-GKLLREIELPV---PRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEETT-SCEEEEEE-SS---SSEEEEEEESTTSSEEEEEE
T ss_pred EEECCC-ccEEEEEcCCC---CCEEEEEEECCCCCEEEEEe
Confidence 999987 88888887664 57899999 46767776654
No 307
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.64 E-value=0.0025 Score=73.80 Aligned_cols=619 Identities=12% Similarity=0.113 Sum_probs=311.0
Q ss_pred eeecCCCceEEEEEccCCcEEEEecC-CCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcCC
Q 001352 341 MDFHPVQHTLLLVGTNVGDTGLWDVN-SGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH 419 (1093)
Q Consensus 341 ~~~spdg~~llasg~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d~ 419 (1093)
-..+++|.+ ...|..+|.+...-+. +++......+++ . +-|...-..|+.+-++| .|.+||.-|
T Consensus 263 ~~v~~~~~~-yLl~d~~G~Lf~l~l~~~~e~~s~~~lkv------------e-~lge~siassi~~L~ng-~lFvGS~~g 327 (1096)
T KOG1897|consen 263 GRVDLQGSR-YLLGDEDGMLFKLLLSHTGETVSGLDLKV------------E-YLGETSIASSINYLDNG-VLFVGSRFG 327 (1096)
T ss_pred ccccCCccE-EEEecCCCcEEEEEeecccccccceEEEE------------E-ecCCcchhhhhhcccCc-eEEEeccCC
Confidence 456778875 5667888887766665 555443211111 0 23444555666666665 667777666
Q ss_pred EEEEEEccCCCcc----cceEEeccccccEEEEEeeCCC---CcEEEEEEc---CCCcEEEEECCCCc-e--eEEeecCC
Q 001352 420 IVQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPC---KQISVITCG---DDKTIKVWDAVTGS-R--TYSFEGHG 486 (1093)
Q Consensus 420 ~i~iwd~~~~~~~----~~~~~~~~h~~~v~~~~~s~d~---~~l~l~s~~---~d~~i~vwd~~~~~-~--~~~~~~h~ 486 (1093)
.=++-.+.+.... ....++ ..-+||.+++.-... +. -++|++ .||++++....-|- . .-.+.| -
T Consensus 328 dSqLi~L~~e~d~gsy~~ilet~-~NLgPI~Dm~Vvd~d~q~q~-qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-i 404 (1096)
T KOG1897|consen 328 DSQLIKLNTEPDVGSYVVILETF-VNLGPIVDMCVVDLDRQGQG-QIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-I 404 (1096)
T ss_pred ceeeEEccccCCCCchhhhhhhc-ccccceeeEEEEeccccCCc-eEEEEeCCCCCCcEEEEecccccceeeEeecCC-c
Confidence 5455555443221 101111 234578887765432 22 355543 68899998643331 1 122333 3
Q ss_pred CCeEEee--ecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEcc-CCCEEEEEecCCCCceeEEEEeC
Q 001352 487 APVYSLC--PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNE 563 (1093)
Q Consensus 487 ~~v~~~~--~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~~~~~~~~i~iwd~ 563 (1093)
..++++. +.+..|. +|+.+-.+-+ ++..+...-......+-......+..|. .|+.|+-.. ...|++++-
T Consensus 405 kg~w~lk~~v~~~~d~-ylvlsf~~eT-rvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvT-----s~~iRl~ss 477 (1096)
T KOG1897|consen 405 KGMWSLKSMVDENYDN-YLVLSFISET-RVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVT-----SNSIRLVSS 477 (1096)
T ss_pred cceeEeeccccccCCc-EEEEEeccce-EEEEEccceEEeccccccccCceEEEEccCCceEEEEe-----cccEEEEcc
Confidence 4456665 5555554 5554443333 3333332211111111111222222222 333333322 223777764
Q ss_pred CCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecC--C----CE
Q 001352 564 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN--G----TL 637 (1093)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~--~----~~ 637 (1093)
. .....+... +.++....+.+...++.++.++.+...++..+.+ .....+.-...|.|+.++|- + ++
T Consensus 478 ~--~~~~~W~~p----~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l-~e~~~~~~e~evaCLDisp~~d~~~~s~~ 550 (1096)
T KOG1897|consen 478 A--GLRSEWRPP----GKITIGVVSANASQVVVAGGGLALFYLEIEDGGL-REVSHKEFEYEVACLDISPLGDAPNKSRL 550 (1096)
T ss_pred h--hhhhcccCC----CceEEEEEeecceEEEEecCccEEEEEEeeccce-eeeeeheecceeEEEecccCCCCCCcceE
Confidence 4 122233222 2334444444556788888778887777776663 22222222345888988873 2 37
Q ss_pred EEEEECCCeEEEEEcCCC-ceeeeccc----ccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccce
Q 001352 638 LAVIANENRIKILETPES-NSVDAAGV----LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 712 (1093)
Q Consensus 638 l~~~~~dg~i~iw~~~~~-~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~ 712 (1093)
+++|..+..+.+.-.... ..+..... .+..|.-..+ -.|..+|.++..||.+.
T Consensus 551 ~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~----------------------e~d~~yLlvalgdG~l~ 608 (1096)
T KOG1897|consen 551 LAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTF----------------------EGDIHYLLVALGDGALL 608 (1096)
T ss_pred EEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEe----------------------eccceEEEEEcCCceEE
Confidence 888877766655443322 22211111 1111111111 23578889999999887
Q ss_pred ecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCce
Q 001352 713 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF 792 (1093)
Q Consensus 713 ~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (1093)
-|-++.........-.. .-...++.--.|+..++.-+.+.+|.-..+|..... -++
T Consensus 609 ~fv~d~~tg~lsd~Kk~--~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~k--------------Lv~-------- 664 (1096)
T KOG1897|consen 609 YFVLDINTGQLSDRKKV--TLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGK--------------LVY-------- 664 (1096)
T ss_pred EEEEEcccceEcccccc--ccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCc--------------EEE--------
Confidence 77655332221111000 012334444456655555555555544444432111 001
Q ss_pred eeccCCCCCCCCCeeEE-EEccC--CCEEEEEeCCeEEEEEccCcee--EEEECCCCCCeEEEEEcCCCCCEEEEEeCC-
Q 001352 793 MVNDTTDSNSQEAVPCF-ALSKN--DAYLFSASGGVISLYIVMTFKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDD- 866 (1093)
Q Consensus 793 ~~~~~~~~~~~~~v~~l-~~s~d--g~~la~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~d~~~lasg~~d- 866 (1093)
....++ .+..+ .|+.+ ...++++..+.+++.-+..-.. ++++. -......+++.+ ....+++.+..
T Consensus 665 spls~k------ev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~-~sl~~~v~s~r~ 736 (1096)
T KOG1897|consen 665 SPLSLK------EVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVP-LGESPRRICYQE-SSLTFGVLSNRI 736 (1096)
T ss_pred eccchH------HhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeec-CCCChhheEecc-cceEEEEEeccc
Confidence 110011 11111 12222 3456777777777776654322 23322 223445566665 34444443321
Q ss_pred -------------CeEEEEEcCCcceeeecc--cc--cCCeEEEEEeCC-CCEEEEEeC----------CCcEEEEeCCC
Q 001352 867 -------------STILIYNARSSEVISKLE--GH--SKRVTGLVFSDA-LNILVSSGG----------DAQIFVWDVDG 918 (1093)
Q Consensus 867 -------------g~i~iwd~~~~~~~~~l~--~h--~~~V~~l~~s~d-g~~l~s~s~----------dg~i~iwd~~~ 918 (1093)
..++++|-.|-+.+...+ .. .-.|.++.|..| +.+++.|.. .|.|.|+.+..
T Consensus 737 e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e 816 (1096)
T KOG1897|consen 737 ESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE 816 (1096)
T ss_pred ccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec
Confidence 156777776665543322 11 123555668877 677777642 46677777766
Q ss_pred -CceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEE
Q 001352 919 -WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTS 997 (1093)
Q Consensus 919 -~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~ 997 (1093)
++... +.... .. +.+.++. --+|+ ++++-...|++|++.+.+.++. ...|..++..+...-.|..+++|
T Consensus 817 ~~~L~~---v~e~~--v~--Gav~aL~-~fngk-llA~In~~vrLye~t~~~eLr~-e~~~~~~~~aL~l~v~gdeI~Vg 886 (1096)
T KOG1897|consen 817 LNSLEL---VAETV--VK--GAVYALV-EFNGK-LLAGINQSVRLYEWTTERELRI-ECNISNPIIALDLQVKGDEIAVG 886 (1096)
T ss_pred CCceee---eeeee--ec--cceeehh-hhCCe-EEEecCcEEEEEEccccceehh-hhcccCCeEEEEEEecCcEEEEe
Confidence 22111 11110 00 1122221 12344 5556667899999998866665 55678899999999999999999
Q ss_pred eCCCcEEEEEcCCCc--eEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecCCCCC
Q 001352 998 FVDGTLSIHEASNLE--VQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1066 (1093)
Q Consensus 998 ~~dg~v~vwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~~ 1066 (1093)
..-+++.+-.....+ ..-.- ..+.|. |..++.+- |...++.+..+|.+++-.....+.
T Consensus 887 Dlm~Sitll~y~~~eg~f~evA--rD~~p~-------Wmtaveil--~~d~ylgae~~gNlf~v~~d~~~~ 946 (1096)
T KOG1897|consen 887 DLMRSITLLQYKGDEGNFEEVA--RDYNPN-------WMTAVEIL--DDDTYLGAENSGNLFTVRKDSDAT 946 (1096)
T ss_pred eccceEEEEEEeccCCceEEee--hhhCcc-------ceeeEEEe--cCceEEeecccccEEEEEecCCCC
Confidence 888887775554443 43221 122222 22233333 356788888999999888764443
No 308
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.61 E-value=7.5e-07 Score=85.62 Aligned_cols=209 Identities=14% Similarity=0.202 Sum_probs=129.8
Q ss_pred ceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEc
Q 001352 338 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS 417 (1093)
Q Consensus 338 V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~ 417 (1093)
|+.+.|+-+- .|+++..++.+......++.+.. .|+-.....+++. +..|.++-.+-+.+--+..+++++.
T Consensus 39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~-----~~~rt~~i~~~~~--~a~~sep~p~~~~s~~~t~V~~~~~ 109 (319)
T KOG4714|consen 39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRCIS-----LWERDDGIDPFKV--LAKNSEIDPNDACTMTDNRVCIGYA 109 (319)
T ss_pred EEEeechhhh--eeecccchhheeeeccceEEEec-----hhhcccCcCceee--eeccCCCCCcccccccCCceEecCC
Confidence 6666677664 58888888888888776665543 2332233333333 2345555555555666889999999
Q ss_pred CCEEEEEEccCCCcccceEEec-cccccEEEEEeeCCCCcEEEEEEc-----CCCcEEEEECCCCceeEEeecCCCCeEE
Q 001352 418 KHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCG-----DDKTIKVWDAVTGSRTYSFEGHGAPVYS 491 (1093)
Q Consensus 418 d~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~l~l~s~~-----~d~~i~vwd~~~~~~~~~~~~h~~~v~~ 491 (1093)
||.+.+++.+.- ++....+. .|.+ -.+.+....+. .+.+++ .-+..+.|+++..+.+..-......|.+
T Consensus 110 dg~~~v~s~~~~--~~~~~~i~~~~~~-~as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~ 184 (319)
T KOG4714|consen 110 DGSLAVFSTDKD--LALMSRIPSIHSG-SASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTA 184 (319)
T ss_pred CceEEEEechHH--Hhhhhhccccccc-ccccceeeccc--EEecCCcceEeeccceeeecccccccccccccccccchh
Confidence 999999998762 22111111 1222 12233333444 333332 1223455555433322211112234888
Q ss_pred eeecccCCccEEEEEecCCeEEEEEcCCCCceE-EecCCCCceEEEEEcc-CCCEEEEEecCCCCceeEEEEeCCC
Q 001352 492 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNESE 565 (1093)
Q Consensus 492 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~s~-d~~~l~~~~~~~~~~~~i~iwd~~~ 565 (1093)
++-+|... +.+++|+.||.+-+||++...... .+..|..++..+.|+| ++..|++++. +|.+..||..+
T Consensus 185 l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~se----dGslw~wdas~ 255 (319)
T KOG4714|consen 185 LCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSE----DGSLWHWDAST 255 (319)
T ss_pred hhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecC----CCcEEEEcCCC
Confidence 88877654 688999999999999999875443 4567888999999999 5678888876 55699999654
No 309
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=1.3e-06 Score=90.55 Aligned_cols=299 Identities=13% Similarity=0.136 Sum_probs=191.4
Q ss_pred cccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEcc
Q 001352 734 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 813 (1093)
Q Consensus 734 ~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 813 (1093)
|...|+.+..+ ..+++++++-||.++.|.-.. ..|..+.. ..+.|...+.+++.+-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~--------------------isGvEfVK---hFraHL~~I~sl~~S~ 63 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSR--------------------ISGVEFVK---HFRAHLGVILSLAVSY 63 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCC--------------------ccceeehh---hhHHHHHHHHhhhccc
Confidence 66666665544 566799999999999985211 01111111 1123777888999999
Q ss_pred CCCEEEEEe--CCeEEEEEccCceeEEEECCCC-CCeEEEEEcCCCC-CEEEE-EeCCCeEEEEEcCCcc-eeeec-ccc
Q 001352 814 NDAYLFSAS--GGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDN-NVIAI-GMDDSTILIYNARSSE-VISKL-EGH 886 (1093)
Q Consensus 814 dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~-~~las-g~~dg~i~iwd~~~~~-~~~~l-~~h 886 (1093)
||.++++.+ |..++++|+++-..+..++... ....+...++.|. ..||+ .-.+|.+.++|-.... ...-+ .-|
T Consensus 64 dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH 143 (558)
T KOG0882|consen 64 DGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLH 143 (558)
T ss_pred cceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccc
Confidence 999999976 5789999998776654433221 1222333444121 13333 3457899999976543 23333 349
Q ss_pred cCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc-eeeeeeee------cCCCcccCCCCceEEEEccCCCEEEE-EeCC
Q 001352 887 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG-IQTCRSLQ------TPDGVMTLAPSETHIQFHKDQTRFLL-VHET 958 (1093)
Q Consensus 887 ~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~------~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~ 958 (1093)
..+|.++.+++-+..++|....|.|.-|.....- .......- .+-+.........++.|+|+|..+++ +.|.
T Consensus 144 ~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~Dr 223 (558)
T KOG0882|consen 144 FSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDR 223 (558)
T ss_pred cCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCccc
Confidence 9999999999999999999999999999987410 00000000 00011111135789999999999999 7888
Q ss_pred eEEEEEcCCcceeeeeecC-------------------------------C-CCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 001352 959 HLAIYEAEELTCLKQWFPI-------------------------------S-SVPISQATFSCDCRMVFTSFVDGTLSIH 1006 (1093)
Q Consensus 959 ~i~vwd~~~~~~~~~~~~~-------------------------------h-~~~v~~~~fs~dg~~l~t~~~dg~v~vw 1006 (1093)
.|++++..+|+.++.+-.. | ...-+.++|...|.+|+-++-=| |+|.
T Consensus 224 kVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvi 302 (558)
T KOG0882|consen 224 KVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVI 302 (558)
T ss_pred EEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEE
Confidence 9999999988766542110 2 33456678888999999887765 8999
Q ss_pred EcCCCceEEEecccccc---------CCCC-CC------CccceeEEEeCCCCCCEEEEEeCCCcEEEE
Q 001352 1007 EASNLEVQCRILSTAYL---------RPTT-SC------LHVYPHAIAAHPLKPTQFAVGLTNGEVYVI 1059 (1093)
Q Consensus 1007 d~~~~~~~~~~~~~~~~---------~~~~-~~------~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w 1059 (1093)
++.++...+.+...... .... +. ....++ +-+.+ |+..++++-.-..+++|
T Consensus 303 n~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~-~~~~~-dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 303 NLDTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPL-LEFQK-DPTIVCTAFKKNRFYLF 369 (558)
T ss_pred EeecCeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCcc-cccCC-CCeEEEeeeecceEEEE
Confidence 99999887655411110 0000 00 001111 22455 57888899888999998
No 310
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.60 E-value=8e-07 Score=87.33 Aligned_cols=118 Identities=21% Similarity=0.299 Sum_probs=86.1
Q ss_pred CCCCCeeEEEEccCCCEEEEEeCCeEEEEEccCce---eEEEECCCCC-----CeEEEEEcCCCCCEEEEEeCCCeEEEE
Q 001352 801 NSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK---TILTIMPPSP-----TATSLAFNPHDNNVIAIGMDDSTILIY 872 (1093)
Q Consensus 801 ~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~---~~~~~~~~~~-----~i~~l~~s~~d~~~lasg~~dg~i~iw 872 (1093)
.|...+.++.|..|.+.++++.+=.|-+|+++--. .+..+++|.. -|++..|+|.....+...+..|.|++-
T Consensus 170 aH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~ 249 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLN 249 (460)
T ss_pred cceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEeh
Confidence 47888999999999999999999999999886322 2334555553 578899999777788888899999999
Q ss_pred EcCCcce----------------eeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q 001352 873 NARSSEV----------------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 919 (1093)
Q Consensus 873 d~~~~~~----------------~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~ 919 (1093)
|++...+ +.-+.+-...|..+.|+++|+++++-+. -+|+|||+...
T Consensus 250 DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~ 311 (460)
T COG5170 250 DLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMA 311 (460)
T ss_pred hhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccc
Confidence 9974321 0111222345777888888888887544 45888888763
No 311
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.59 E-value=7.1e-05 Score=87.98 Aligned_cols=243 Identities=14% Similarity=0.165 Sum_probs=144.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceee
Q 001352 580 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD 659 (1093)
Q Consensus 580 ~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 659 (1093)
..|.++.|..+.+.++.+...|.|.+-|.++......-... ..|.+++|+||+..++..+..+++.+-+.. -.++.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd---~GI~aaswS~Dee~l~liT~~~tll~mT~~-f~~i~ 144 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVD---NGISAASWSPDEELLALITGRQTLLFMTKD-FEPIA 144 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeecc---CceEEEeecCCCcEEEEEeCCcEEEEEecc-ccchh
Confidence 57999999999999999999999999988876654433333 348999999999999999998887764432 11110
Q ss_pred ecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceE
Q 001352 660 AAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKIS 739 (1093)
Q Consensus 660 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~ 739 (1093)
...-+. .-.+.+....+|++...-.|.|. ...
T Consensus 145 E~~L~~------d~~~~sk~v~VGwGrkeTqfrgs------------------------------------------~gr 176 (1265)
T KOG1920|consen 145 EKPLDA------DDERKSKFVNVGWGRKETQFRGS------------------------------------------EGR 176 (1265)
T ss_pred cccccc------ccccccccceecccccceeeecc------------------------------------------hhh
Confidence 000000 00001111111111111111000 000
Q ss_pred EEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEE
Q 001352 740 RLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF 819 (1093)
Q Consensus 740 ~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la 819 (1093)
..+.-+ ...... +.+....+.-+.+.|--||+++|
T Consensus 177 ~~~~~~-----------------------------------------~~~ek~----~~~~~~~~~~~~IsWRgDg~~fA 211 (1265)
T KOG1920|consen 177 QAARQK-----------------------------------------IEKEKA----LEQIEQDDHKTSISWRGDGEYFA 211 (1265)
T ss_pred hccccc-----------------------------------------cccccc----ccchhhccCCceEEEccCCcEEE
Confidence 000000 000000 00000122334688999999999
Q ss_pred EEe-----C-CeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEe---CCCeEEEEEcCC---cceeeeccccc
Q 001352 820 SAS-----G-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM---DDSTILIYNARS---SEVISKLEGHS 887 (1093)
Q Consensus 820 ~~~-----d-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~---~dg~i~iwd~~~---~~~~~~l~~h~ 887 (1093)
+.. + ..|+|||-+ |..-..-....+.-.+++|-| .|.++|+-. .|+.|.+|.-.. |+....++...
T Consensus 212 Vs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de 289 (1265)
T KOG1920|consen 212 VSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDE 289 (1265)
T ss_pred EEEEeccCCceeEEEeccc-chhhcccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCccccccccCCcccc
Confidence 853 4 679999987 554444333445567899999 888888743 455799998543 23333344445
Q ss_pred CCeEEEEEeCCCCEEEE---EeCCCcEEEEeCCCCce
Q 001352 888 KRVTGLVFSDALNILVS---SGGDAQIFVWDVDGWGI 921 (1093)
Q Consensus 888 ~~V~~l~~s~dg~~l~s---~s~dg~i~iwd~~~~~~ 921 (1093)
.+|..++|+.++..||+ ......|++|-+.+..-
T Consensus 290 ~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhW 326 (1265)
T KOG1920|consen 290 KEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHW 326 (1265)
T ss_pred cchheeeecCCCCceeeeecccccceEEEEEecCeEE
Confidence 55999999999999998 55555699999988553
No 312
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.58 E-value=0.00059 Score=66.30 Aligned_cols=137 Identities=12% Similarity=-0.043 Sum_probs=90.2
Q ss_pred cEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCC
Q 001352 501 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN 580 (1093)
Q Consensus 501 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~ 580 (1093)
.+++.|+..+.+..-|..++......... .++.+-+.- -|++++.+.. .+.+++.+.++|.....+.... .
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg-~RiE~sa~v-vgdfVV~GCy----~g~lYfl~~~tGs~~w~f~~~~---~ 94 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILG-VRIECSAIV-VGDFVVLGCY----SGGLYFLCVKTGSQIWNFVILE---T 94 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhC-ceeeeeeEE-ECCEEEEEEc----cCcEEEEEecchhheeeeeehh---h
Confidence 57778888888888888777766544332 233332222 4667777776 4459999999998887776544 2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEE
Q 001352 581 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 648 (1093)
Q Consensus 581 ~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 648 (1093)
--......+++..+.+|+.|++.+..|..+..++......+.. ..+-+..|-...|..+...|.+.
T Consensus 95 vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~--f~sP~i~~g~~sly~a~t~G~vl 160 (354)
T KOG4649|consen 95 VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGT--FVSPVIAPGDGSLYAAITAGAVL 160 (354)
T ss_pred hccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCce--eccceecCCCceEEEEeccceEE
Confidence 2223456778999999999999999999999998887665543 23344555223344444444443
No 313
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.57 E-value=3.8e-05 Score=79.72 Aligned_cols=285 Identities=12% Similarity=0.138 Sum_probs=154.6
Q ss_pred eeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCceEEEEecCCC---
Q 001352 556 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----------DDHVIKIWDMNKVQLLTTIDAGGG--- 622 (1093)
Q Consensus 556 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~--- 622 (1093)
++++++|..+++.+..+.. +-...+..+|+++.+++++ ..-.|.+||..+-.....+.....
T Consensus 17 ~rv~viD~d~~k~lGmi~~-----g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~ 91 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT-----GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA 91 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE-----ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred ceEEEEECCCCcEEEEeec-----ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence 4599999999998877765 3355577899999988754 334689999999988887665432
Q ss_pred --CCCCceEEEecCCCEEEEEEC--CCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCC
Q 001352 623 --LPENPRICFNKNGTLLAVIAN--ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKED 698 (1093)
Q Consensus 623 --~~~v~~v~~s~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d 698 (1093)
.......+++.||+++++... ..+|.|.|+...+.+..+..+. |..+-|.+
T Consensus 92 ~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C~~iyP~~--------------------- 146 (342)
T PF06433_consen 92 QVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----CWLIYPSG--------------------- 146 (342)
T ss_dssp -BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----EEEEEEEE---------------------
T ss_pred eecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----EEEEEecC---------------------
Confidence 123456788889988877543 4678888888776665443211 11111100
Q ss_pred CccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccc
Q 001352 699 VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTK 778 (1093)
Q Consensus 699 ~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~ 778 (1093)
...+.+-+.||.+....++............-......-+..-+++..+..++..+-+|.++--++........
T Consensus 147 ~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~------ 220 (342)
T PF06433_consen 147 NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFG------ 220 (342)
T ss_dssp TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEE------
T ss_pred CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCccccc------
Confidence 01133334444444433331111110000000001111222334455555566677777777776655432111
Q ss_pred cCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEE-e---CC-------eEEEEEccCceeEEEECCCCCCe
Q 001352 779 VPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-S---GG-------VISLYIVMTFKTILTIMPPSPTA 847 (1093)
Q Consensus 779 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~---dg-------~i~iwd~~~~~~~~~~~~~~~~i 847 (1093)
.-|...+...... .. ..+.-.-+++++....|.+. . ++ .|.++|+.+++.+.++.. ..++
T Consensus 221 ---~~~~~~t~~e~~~-~W----rPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~ 291 (342)
T PF06433_consen 221 ---KPWSLLTDAEKAD-GW----RPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPI 291 (342)
T ss_dssp ---EEEESS-HHHHHT-TE----EE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEE
T ss_pred ---CcccccCcccccc-Cc----CCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCcc
Confidence 1111111000000 00 01122346666655444433 1 11 388889999999999873 3467
Q ss_pred EEEEEcCCCCCEEEEEe-CCCeEEEEEcCCcceeeeccc
Q 001352 848 TSLAFNPHDNNVIAIGM-DDSTILIYNARSSEVISKLEG 885 (1093)
Q Consensus 848 ~~l~~s~~d~~~lasg~-~dg~i~iwd~~~~~~~~~l~~ 885 (1093)
.+++++.++..+|++.+ .++.+.+||..+|+.++++++
T Consensus 292 ~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 292 DSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp SEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred ceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 89999996555776554 578999999999999988874
No 314
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.56 E-value=1e-05 Score=78.29 Aligned_cols=201 Identities=14% Similarity=0.113 Sum_probs=134.3
Q ss_pred CCCEEEEEe-CCeEEEEEccCceeEE-EECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccC--C
Q 001352 814 NDAYLFSAS-GGVISLYIVMTFKTIL-TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK--R 889 (1093)
Q Consensus 814 dg~~la~~~-dg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~--~ 889 (1093)
..-+||.|+ .|...+|...+.+... ....+...|+-+.=-.+...-+..++.|.++++.++..+.....+ |.. .
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~--h~~~~~ 160 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV--HNQNLT 160 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccccee--eccccc
Confidence 345677775 5999999998655433 333344433322111112234556788888888887754432222 333 3
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCc
Q 001352 890 VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEEL 968 (1093)
Q Consensus 890 V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~ 968 (1093)
+.++++|+|++++++.+....|..|.++............+.. ..-.+..||.....+|+ ..||++.|||+...
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~-----D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~ 235 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS-----DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNM 235 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC-----CCceeeeeccCcceEEEEecCCcEEEEEeccc
Confidence 7889999999999999999999999998754333221111111 23467899999999998 58999999999865
Q ss_pred cee----eeeecCCCCCEEEEEEccCCC--EEEEEeCCCcEEEEEcCCCceEEEecccc
Q 001352 969 TCL----KQWFPISSVPISQATFSCDCR--MVFTSFVDGTLSIHEASNLEVQCRILSTA 1021 (1093)
Q Consensus 969 ~~~----~~~~~~h~~~v~~~~fs~dg~--~l~t~~~dg~v~vwd~~~~~~~~~~~~~~ 1021 (1093)
... ....+.|.+.+..+.||+-|. +|+..-.-+.+.|-|++++.-...+....
T Consensus 236 ~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~ 294 (344)
T KOG4532|consen 236 ATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPD 294 (344)
T ss_pred ccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCc
Confidence 432 223556899999999998664 45545456789999999998877766443
No 315
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.55 E-value=2e-05 Score=88.42 Aligned_cols=183 Identities=12% Similarity=0.071 Sum_probs=118.3
Q ss_pred EEccCCCEEEEEe--CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCC----eEEEEEcCCcceeeec
Q 001352 810 ALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS----TILIYNARSSEVISKL 883 (1093)
Q Consensus 810 ~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg----~i~iwd~~~~~~~~~l 883 (1093)
-++|||+.+...+ .+.+.+.|.++.+...++.... ....++++| +++++++.+.+. ++..-+..+...+..+
T Consensus 199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvf 276 (635)
T PRK02888 199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVF 276 (635)
T ss_pred ccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEE
Confidence 3567888775554 4778899999888777765333 456789999 888888776322 2222222211111111
Q ss_pred ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC----CceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE--eC
Q 001352 884 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG----WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HE 957 (1093)
Q Consensus 884 ~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~d 957 (1093)
.-. .+ -++.++|++... .++.|.+.|..+ +.. ....+.... ....+++||||++++++ .+
T Consensus 277 ni~--~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~-v~~yIPVGK-------sPHGV~vSPDGkylyVanklS 342 (635)
T PRK02888 277 NIA--RI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSA-LTRYVPVPK-------NPHGVNTSPDGKYFIANGKLS 342 (635)
T ss_pred chH--HH--HHhhhCCCEEEE--CCCEEEEEECCccccCCcc-eEEEEECCC-------CccceEECCCCCEEEEeCCCC
Confidence 100 00 133457877665 367799999887 221 112233332 36689999999999984 57
Q ss_pred CeEEEEEcCCcce------------eeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 001352 958 THLAIYEAEELTC------------LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1010 (1093)
Q Consensus 958 ~~i~vwd~~~~~~------------~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~ 1010 (1093)
.++.|+|+++.+. ...... .......+|.++|....|-.-|..|..|++..
T Consensus 343 ~tVSVIDv~k~k~~~~~~~~~~~~vvaevev--GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 343 PTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL--GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CcEEEEEChhhhhhhhccCCccceEEEeecc--CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 8999999987653 333222 33445678999999888999999999999987
No 316
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=1.4e-05 Score=82.03 Aligned_cols=251 Identities=13% Similarity=0.154 Sum_probs=149.0
Q ss_pred eecCCCCCeEEEEECCCCC-EEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEE
Q 001352 392 LVRDPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 470 (1093)
Q Consensus 392 ~~~~h~~~V~~v~~s~dg~-~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~v 470 (1093)
++.+|...|..++|||... ++..++.+.+|+|.|+++...+. .+..| ..+++++|.-|... ++..|-..|.|.|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence 5788999999999999877 78889999999999999976554 44556 78999999999876 8999999999999
Q ss_pred EECCCCce-eEEeec--CCCCeEEeeeccc----CCccEEEEEecCCeEEEEEcCCCC--ceEEecC-CCCceEEEEEcc
Q 001352 471 WDAVTGSR-TYSFEG--HGAPVYSLCPHAK----ENIHFIFSISVDGKIKAWLYDSLG--ARVDYDA-PGLGCTRMAYSA 540 (1093)
Q Consensus 471 wd~~~~~~-~~~~~~--h~~~v~~~~~~~~----~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~-~~~~v~~~~~s~ 540 (1093)
||++..+- +..+.+ ...+|..++..+. +.+.+++..+.+ +..|++.... ....... ..+.+.++.+.+
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 99986543 223322 2334444432211 122344444433 3445443222 2222222 244666777777
Q ss_pred CCCEEEEEecCCCCceeEE----EEeCCCCeeeeeee----cccc-cCCCeEEEEEcCCCCEEEE-EeCCCcEEEEECCC
Q 001352 541 NGRRLFSCGTSKEGESFLV----EWNESEGAIKRTYQ----GLQL-QHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNK 610 (1093)
Q Consensus 541 d~~~l~~~~~~~~~~~~i~----iwd~~~~~~~~~~~----~~~~-~~~~v~~v~~~~~~~~l~~-~~~dg~i~iwd~~~ 610 (1093)
-.+.++...........++ --|-.+|..+-.-+ |... ....-..+.-.++.++++. +...+.+.+||..+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 6666666554321111111 11222332221111 1110 0001112223455566665 66778999999999
Q ss_pred CceEEEEecCCCCCCCceEEEec-C-CCEEEEEECCCeEEEEEcC
Q 001352 611 VQLLTTIDAGGGLPENPRICFNK-N-GTLLAVIANENRIKILETP 653 (1093)
Q Consensus 611 ~~~~~~~~~~~~~~~v~~v~~s~-~-~~~l~~~~~dg~i~iw~~~ 653 (1093)
++.++++.... ++..++... + +.+|++-+ |..++||..+
T Consensus 421 ~evvQ~l~~~e---pv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 421 FEVVQTLALSE---PVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred hheeeecccCc---ceeecceeecCCcchhhhee-cceEEEEecC
Confidence 99999998763 356665543 3 34555554 4578887654
No 317
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.54 E-value=1.4e-05 Score=83.70 Aligned_cols=195 Identities=14% Similarity=0.112 Sum_probs=120.9
Q ss_pred CCCEEEEE-eCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeec-cccc---C
Q 001352 814 NDAYLFSA-SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-EGHS---K 888 (1093)
Q Consensus 814 dg~~la~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l-~~h~---~ 888 (1093)
++..+.++ .++.+..||..+|+.+.++............ .+..+++++.++.++.+|..+|+.+.+. .... .
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~---~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~ 111 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVV---DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG 111 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEE---ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeee---cccccccccceeeeEecccCCcceeeeeccccccccc
Confidence 44455555 5799999999999999887753321122222 2345666778889999999999998874 3221 1
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCccc--CCCCceEEEEccCCCEEEEEeCCe-EEEEEc
Q 001352 889 RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT--LAPSETHIQFHKDQTRFLLVHETH-LAIYEA 965 (1093)
Q Consensus 889 ~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~dg~~l~~~~d~~-i~vwd~ 965 (1093)
.........++..++.+..++.|..+|..+|+..-............ ....+..-....++..+++..++. +.+ |+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~ 190 (238)
T PF13360_consen 112 VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DL 190 (238)
T ss_dssp TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ET
T ss_pred cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEE-EC
Confidence 12223333347888888889999999999987644333322221110 000122333334554444456665 555 99
Q ss_pred CCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEE
Q 001352 966 EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCR 1016 (1093)
Q Consensus 966 ~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~ 1016 (1093)
.+++.+-. .. ...+.. ....++..|+.++.++.|..||+.+|+.+..
T Consensus 191 ~tg~~~w~-~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 191 ATGEKLWS-KP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp TTTEEEEE-EC--SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred CCCCEEEE-ec--CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 99986532 21 222322 2457788888888999999999999988753
No 318
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=2.4e-06 Score=88.63 Aligned_cols=257 Identities=15% Similarity=0.097 Sum_probs=176.0
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcC-CCcEEEEECC
Q 001352 396 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAV 474 (1093)
Q Consensus 396 h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~-d~~i~vwd~~ 474 (1093)
|.+.|+.+.-+ -.+++.+++.||.++.|.-..-..+.-...+..|.+.|.+++.+.|+. ++.|.+. |..++++|++
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~--L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW--LFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce--eEeeccCcccceeEEEee
Confidence 77777777654 467999999999999998664233333334668999999999999998 7888777 9999999988
Q ss_pred CCceeEEeec--CCCCeEEeeecccCCc--cEEEEEecCCeEEEEEcCCCCce--EEecCCCCceEEEEEccCCCEEEEE
Q 001352 475 TGSRTYSFEG--HGAPVYSLCPHAKENI--HFIFSISVDGKIKAWLYDSLGAR--VDYDAPGLGCTRMAYSANGRRLFSC 548 (1093)
Q Consensus 475 ~~~~~~~~~~--h~~~v~~~~~~~~~~~--~~l~s~~~dg~i~vwd~~~~~~~--~~~~~~~~~v~~~~~s~d~~~l~~~ 548 (1093)
+-..+.-++- -.+.+..+ ...++. ..-++.-.+|.+.++|-....+. ..-..|..+|..+.+.+-+..+++.
T Consensus 85 n~DminmiKL~~lPg~a~wv--~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSi 162 (558)
T KOG0882|consen 85 NFDMINMIKLVDLPGFAEWV--TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSI 162 (558)
T ss_pred ccchhhhcccccCCCceEEe--cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeec
Confidence 7655432221 12222211 111111 23344456788999987655432 2345577899999999999988886
Q ss_pred ecCCCCceeEEEEeCCC------Ceeeeee------ecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEE
Q 001352 549 GTSKEGESFLVEWNESE------GAIKRTY------QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 616 (1093)
Q Consensus 549 ~~~~~~~~~i~iwd~~~------~~~~~~~------~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 616 (1093)
.. .|.|.-|.... .+..-.+ .+.........++.|+|++..+.+-+.|..|++++..+|+.++.
T Consensus 163 D~----~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqe 238 (558)
T KOG0882|consen 163 DI----SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQE 238 (558)
T ss_pred cc----cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhh
Confidence 43 67899998763 1111111 11111235678999999999999999999999999999887654
Q ss_pred EecCC-------------------------------CCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecc
Q 001352 617 IDAGG-------------------------------GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG 662 (1093)
Q Consensus 617 ~~~~~-------------------------------~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 662 (1093)
+.... ....-..++|...|++|+.++--| |++.++.++...+.+.
T Consensus 239 iDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 239 IDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILG 314 (558)
T ss_pred hhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence 43210 011234578888899998887754 8899999887766554
No 319
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.52 E-value=3.6e-07 Score=91.36 Aligned_cols=168 Identities=16% Similarity=0.117 Sum_probs=126.1
Q ss_pred eeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcC
Q 001352 339 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 418 (1093)
Q Consensus 339 ~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d 418 (1093)
+.++||-+-.-.-++.+.+-.|-+-|++||.... + ...+.|.++.|...+.++..|+.+
T Consensus 215 ~~CawSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f-~sksDVfAlQf~~s~nLv~~GcRn 273 (425)
T KOG2695|consen 215 WSCAWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------F-QSKSDVFALQFAGSDNLVFNGCRN 273 (425)
T ss_pred hhhhhhhccceeeecccccceeEEEEeecccccc--------------------c-ccchhHHHHHhcccCCeeEecccC
Confidence 3346664332223444556789999999986542 1 256789999999999999999999
Q ss_pred CEEEEEEccCCCc--ccceEEeccccccEEEEEeeC-CCCcEEEEEEcCCCcEEEEECCCCce---eEEeecCCCCeEEe
Q 001352 419 HIVQLYAYHGGSD--ARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSR---TYSFEGHGAPVYSL 492 (1093)
Q Consensus 419 ~~i~iwd~~~~~~--~~~~~~~~~h~~~v~~~~~s~-d~~~l~l~s~~~d~~i~vwd~~~~~~---~~~~~~h~~~v~~~ 492 (1093)
|.|...|+..+.. ......+ -|...|+++.... +++ +|++.+.+|+|++||.+.-++ ++++.||...-.-+
T Consensus 274 geI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l 350 (425)
T KOG2695|consen 274 GEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYL 350 (425)
T ss_pred CcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeeccccccccc
Confidence 9999999986521 1111122 5999999998877 555 788999999999999987666 88899997766666
Q ss_pred eecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC
Q 001352 493 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG 530 (1093)
Q Consensus 493 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 530 (1093)
-++..+....+++++.|...|+|.++.+....+.+.+.
T Consensus 351 ~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 351 PAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred ccccccccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence 56666677789999999999999999888777665443
No 320
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.51 E-value=5.7e-05 Score=83.67 Aligned_cols=267 Identities=14% Similarity=0.190 Sum_probs=148.5
Q ss_pred cCCCceEEEEE--------ccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEE
Q 001352 344 HPVQHTLLLVG--------TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 415 (1093)
Q Consensus 344 spdg~~llasg--------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~ 415 (1093)
|||++++|+.- +..+.+.|||+++++... +......+....|||||+++|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------------------l~~~~~~~~~~~~sP~g~~~~~v 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------------------LTPPPPKLQDAKWSPDGKYIAFV 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------------------SS-EETTBSEEEE-SSSTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------------------CcCCccccccceeecCCCeeEEE
Confidence 79999766632 123678899999876553 22225678899999999999998
Q ss_pred EcCCEEEEEEccCCCcccceEEecc-------c---------cccEEEEEeeCCCCcEEEEEEcCCCc------------
Q 001352 416 YSKHIVQLYAYHGGSDARQQLEIDA-------H---------VGNVNDLAFSAPCKQISVITCGDDKT------------ 467 (1093)
Q Consensus 416 ~~d~~i~iwd~~~~~~~~~~~~~~~-------h---------~~~v~~~~~s~d~~~l~l~s~~~d~~------------ 467 (1093)
. ++.|.+++..++...+. +..| - -+.-..+-|||||+++.++... +..
T Consensus 61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d-~~~v~~~~~~~~~~~ 136 (353)
T PF00930_consen 61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD-EREVPEYPLPDYSPP 136 (353)
T ss_dssp E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE--TTS-EEEEEEESSS
T ss_pred e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC-CcCCceEEeeccCCc
Confidence 5 56799999877643221 2222 0 1123568899999953332222 122
Q ss_pred -----------------------EEEEECCCCceeE-Ee----ecCCCCeEEeeecccCCccEEEEE--ecCC---eEEE
Q 001352 468 -----------------------IKVWDAVTGSRTY-SF----EGHGAPVYSLCPHAKENIHFIFSI--SVDG---KIKA 514 (1093)
Q Consensus 468 -----------------------i~vwd~~~~~~~~-~~----~~h~~~v~~~~~~~~~~~~~l~s~--~~dg---~i~v 514 (1093)
+.|+|+.+++... .. ..-..-+..+.|.+ ++..|+.. ..+. .+.+
T Consensus 137 ~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~--d~~~l~~~~~nR~q~~~~l~~ 214 (353)
T PF00930_consen 137 DSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSP--DGKRLWVQWLNRDQNRLDLVL 214 (353)
T ss_dssp TESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEE--TTEEEEEEEEETTSTEEEEEE
T ss_pred cccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecC--CCcEEEEEEcccCCCEEEEEE
Confidence 2334444443321 11 11223344555543 33322222 2222 2556
Q ss_pred EEcCCCCceEEecCC-CCc---eEEEEEc-cCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCe-EEEEEc
Q 001352 515 WLYDSLGARVDYDAP-GLG---CTRMAYS-ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV-SVVHFD 588 (1093)
Q Consensus 515 wd~~~~~~~~~~~~~-~~~---v~~~~~s-~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v-~~v~~~ 588 (1093)
+|..++......... ... .....+. +++..++..+. .++-..|++++..++.......| . -.| ..+.++
T Consensus 215 ~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~-~~G~~hly~~~~~~~~~~~lT~G-~---~~V~~i~~~d 289 (353)
T PF00930_consen 215 CDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE-RDGYRHLYLYDLDGGKPRQLTSG-D---WEVTSILGWD 289 (353)
T ss_dssp EEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE-TTSSEEEEEEETTSSEEEESS-S-S---S-EEEEEEEE
T ss_pred EECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEE-cCCCcEEEEEcccccceeccccC-c---eeecccceEc
Confidence 677665554433222 222 2345554 78887777765 66788899999988875533333 2 456 346788
Q ss_pred CCCCEEEE-EeC----CCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEEC
Q 001352 589 TAKDQILA-AGD----DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 643 (1093)
Q Consensus 589 ~~~~~l~~-~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 643 (1093)
++++.++. +.. ...|+.-++..+.....+...... ...+.|||+|++++....
T Consensus 290 ~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~--~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 290 EDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGD--HYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp CTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSST--TEEEEE-TTSSEEEEEEE
T ss_pred CCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCC--ceEEEECCCCCEEEEEEc
Confidence 88777654 443 235666666634445555544331 148999999999887654
No 321
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=1.7e-06 Score=87.90 Aligned_cols=173 Identities=17% Similarity=0.252 Sum_probs=121.3
Q ss_pred hHHHHHHHHHhhhhcChHHHHHHHHHhcCCC--------hhHHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHH
Q 001352 5 NKDLVFLILQFLNEEGFTESAHMLERESRFY--------FDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEI 76 (1093)
Q Consensus 5 ~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~--------~~~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i 76 (1093)
+.-+-|+|+.||..+||.++|..|-++|.+. .++..++++|++|+...|+.....-...-. +....+-|.+
T Consensus 115 r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~Lk-K~~S~lEf~l 193 (389)
T KOG0396|consen 115 RNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELK-KEESSLEFQL 193 (389)
T ss_pred HHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH-hccchhhhHH
Confidence 3446799999999999999999999999974 237888999999999999988765311101 1222377999
Q ss_pred HhhhhhhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcccCcccccccccccCCChHHHHHHHH--HHHhhccc
Q 001352 77 RKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMML--ELKQIIEA 154 (1093)
Q Consensus 77 ~~~~~lEll~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~R~~l~~--~l~~~~~~ 154 (1093)
+.|.|+||+..+++.+|+.+.+++|.|....+...++....++.++....-.. +.+-....|=..+. .++.+.+-
T Consensus 194 RlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t~~sk---y~~l~~~~rw~~l~~lF~s~a~~l 270 (389)
T KOG0396|consen 194 RLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYTSSSK---YLNLLTADRWSVLADLFLSEALKL 270 (389)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccccCccc---ccCcccHHHHHHHHHHhhHHHHHH
Confidence 99999999999999999999999999999888888899999998865433221 11122233333332 23333222
Q ss_pred CcccccccCCCCCcchHHHHHHHHhHHhhh-hcCCCC
Q 001352 155 NPILQGKLKFPSIKRQRLRRLINQSLNWQH-VHCANP 190 (1093)
Q Consensus 155 ~~~~~~~~~~~~~p~~rL~~ll~qa~~~q~-~~c~~~ 190 (1093)
..+|+ ..+|.++|+--+..|. -.|...
T Consensus 271 -------~~i~~--~~~L~~~l~~GLsalKTp~c~~~ 298 (389)
T KOG0396|consen 271 -------FGIPI--NPALTIYLQAGLSALKTPRCLND 298 (389)
T ss_pred -------hCCCC--CcHHHHHHHhhhhhccccccccc
Confidence 12221 2358888887777773 345443
No 322
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.47 E-value=3.5e-05 Score=86.58 Aligned_cols=105 Identities=12% Similarity=0.095 Sum_probs=76.0
Q ss_pred EEccCCCEEEEEeCCeEEEEEccC----c-eeEEEECCCCCCeEEEEEcCCCCCEEEEE-eCCCeEEEEEcCCcce----
Q 001352 810 ALSKNDAYLFSASGGVISLYIVMT----F-KTILTIMPPSPTATSLAFNPHDNNVIAIG-MDDSTILIYNARSSEV---- 879 (1093)
Q Consensus 810 ~~s~dg~~la~~~dg~i~iwd~~~----~-~~~~~~~~~~~~i~~l~~s~~d~~~lasg-~~dg~i~iwd~~~~~~---- 879 (1093)
++.++|++... .++.|.+.|..+ + +.+..+. -......++++| ||++++++ ..+.+|.|.|+.+.+.
T Consensus 283 a~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~ 359 (635)
T PRK02888 283 EAVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDG 359 (635)
T ss_pred HhhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhc
Confidence 34567887665 467899999988 3 4444444 555677899999 77776655 4588999999987542
Q ss_pred --------eeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 001352 880 --------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 918 (1093)
Q Consensus 880 --------~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~ 918 (1093)
+.+.+-- ......+|.++|+...|..-|..|..|++..
T Consensus 360 ~~~~~~~vvaevevG-lGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 360 KIKPRDAVVAEPELG-LGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cCCccceEEEeeccC-CCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 3333322 2234578999999888999999999999986
No 323
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.46 E-value=5.3e-05 Score=88.98 Aligned_cols=271 Identities=11% Similarity=0.201 Sum_probs=155.6
Q ss_pred ccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccC
Q 001352 735 ANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 814 (1093)
Q Consensus 735 ~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 814 (1093)
...|.++.|-.++..++.+...|.+.+-+...... .... .-...|.+++||||
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-----------------------eivg----~vd~GI~aaswS~D 120 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLEL-----------------------EIVG----NVDNGISAASWSPD 120 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccce-----------------------eeee----eccCceEEEeecCC
Confidence 36899999999999999999999988864332111 0000 14678999999999
Q ss_pred CCEEEEEeCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcc-----ee------eec
Q 001352 815 DAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-----VI------SKL 883 (1093)
Q Consensus 815 g~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~-----~~------~~l 883 (1093)
+++++..+.+..-+....+..++..-.-+. .-.+ .++.+-+|. ...=.-+.-..|+ .+ ...
T Consensus 121 ee~l~liT~~~tll~mT~~f~~i~E~~L~~------d~~~-~sk~v~VGw-GrkeTqfrgs~gr~~~~~~~~~ek~~~~~ 192 (1265)
T KOG1920|consen 121 EELLALITGRQTLLFMTKDFEPIAEKPLDA------DDER-KSKFVNVGW-GRKETQFRGSEGRQAARQKIEKEKALEQI 192 (1265)
T ss_pred CcEEEEEeCCcEEEEEeccccchhcccccc------cccc-ccccceecc-cccceeeecchhhhcccccccccccccch
Confidence 999999986444444444444443221111 1111 222222221 1111111111111 11 111
Q ss_pred ccccCCeEEEEEeCCCCEEEEEe----CC-CcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE----
Q 001352 884 EGHSKRVTGLVFSDALNILVSSG----GD-AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL---- 954 (1093)
Q Consensus 884 ~~h~~~V~~l~~s~dg~~l~s~s----~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~---- 954 (1093)
.-|+ .=+.+.|--||+++|+.. .+ +.|+|||-+. .... ...+.. +--.+++|-|.|.++++
T Consensus 193 ~~~~-~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg-~Lns---~se~~~-----~l~~~LsWkPsgs~iA~iq~~ 262 (1265)
T KOG1920|consen 193 EQDD-HKTSISWRGDGEYFAVSFVESETGTRKIRVYDREG-ALNS---TSEPVE-----GLQHSLSWKPSGSLIAAIQCK 262 (1265)
T ss_pred hhcc-CCceEEEccCCcEEEEEEEeccCCceeEEEecccc-hhhc---ccCccc-----ccccceeecCCCCeEeeeeec
Confidence 1122 235689999999999842 23 7899999883 3211 111110 13458999999999998
Q ss_pred EeCCeEEEEEcCCcceeeee---ecCCCCCEEEEEEccCCCEEEE---EeCCCcEEEEEcCCCceEEEeccccccCCCCC
Q 001352 955 VHETHLAIYEAEELTCLKQW---FPISSVPISQATFSCDCRMVFT---SFVDGTLSIHEASNLEVQCRILSTAYLRPTTS 1028 (1093)
Q Consensus 955 ~~d~~i~vwd~~~~~~~~~~---~~~h~~~v~~~~fs~dg~~l~t---~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 1028 (1093)
++++.|.++.-... .-..+ .+....+|..++|+.++..|++ ......|++|-+.+....-+.. -..+..
T Consensus 263 ~sd~~IvffErNGL-~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~--l~~~~~-- 337 (1265)
T KOG1920|consen 263 TSDSDIVFFERNGL-RHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQE--LQFSQK-- 337 (1265)
T ss_pred CCCCcEEEEecCCc-cccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEE--Eecccc--
Confidence 25677999986432 21111 1122345999999999999997 4444559999998875432221 011111
Q ss_pred CCccceeEEEeCCCCCCEEEEEeCCCcEEEEec
Q 001352 1029 CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1061 (1093)
Q Consensus 1029 ~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~ 1061 (1093)
.. +.|+|.....|.+-..+|...+.++
T Consensus 338 ---~~---~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 338 ---AL---LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred ---cc---ccccCCCceeEEEEecCCcEEEEEE
Confidence 01 4566655566666666666666554
No 324
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.45 E-value=0.00023 Score=78.89 Aligned_cols=304 Identities=12% Similarity=0.095 Sum_probs=156.2
Q ss_pred ccCCCEEEEEecCC-----CCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 001352 539 SANGRRLFSCGTSK-----EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 613 (1093)
Q Consensus 539 s~d~~~l~~~~~~~-----~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 613 (1093)
|||+++++...... +..+.+.++|+.+++....... . ..+....|+|+|+.++... ++.|++++..++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~---~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-P---PKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-E---TTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-c---cccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence 57888877743211 1245689999999877665554 2 5788899999999988876 57899999887744
Q ss_pred EEEEecCCC----------------CCCCceEEEecCCCEEEEEECC-CeEEEEEcC---CCceeeecccccccceeeee
Q 001352 614 LTTIDAGGG----------------LPENPRICFNKNGTLLAVIANE-NRIKILETP---ESNSVDAAGVLSDNLRKLSV 673 (1093)
Q Consensus 614 ~~~~~~~~~----------------~~~v~~v~~s~~~~~l~~~~~d-g~i~iw~~~---~~~~~~~~~~~~~~i~~~~~ 673 (1093)
.+ +...+. ...-..+.|||||++|+....| ..+..+.+. .... ....+..+.+
T Consensus 76 ~~-lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~------~yp~~~~~~Y 148 (353)
T PF00930_consen 76 TQ-LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS------QYPEVESIRY 148 (353)
T ss_dssp EE-SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE------SS-EEEEEE-
T ss_pred EE-eccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc------cCCccccccc
Confidence 33 222220 1223578899999999887553 333333322 1110 0001111111
Q ss_pred cCCCceeeeeccCCceEecCCCCCCCccceeeccccc--ceecceeeccCccccccccC--ccccccceEEEEeecCCce
Q 001352 674 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK--SEVEKPLFARPSECQSLLLP--SKVKANKISRLTYNNGGQA 749 (1093)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~--i~~w~~~~~~~~~~~~~~~~--~~~~~~~i~~l~~s~~g~~ 749 (1093)
. ..|...-. +.++++..+... .+..+ .......+..+.|+++++.
T Consensus 149 P----------------------------k~G~~np~v~l~v~~~~~~~~~---~~~~~~~~~~~~~yl~~v~W~~d~~~ 197 (353)
T PF00930_consen 149 P----------------------------KAGDPNPRVSLFVVDLASGKTT---ELDPPNSLNPQDYYLTRVGWSPDGKR 197 (353)
T ss_dssp -----------------------------BTTS---EEEEEEEESSSTCCC---EE---HHHHTSSEEEEEEEEEETTEE
T ss_pred C----------------------------CCCCcCCceEEEEEECCCCcEE---EeeeccccCCCccCcccceecCCCcE
Confidence 1 01111112 233343322221 11111 1224567889999999984
Q ss_pred EEEeecc---ceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEc-cCCCEEEEEe--C
Q 001352 750 IFALASN---GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS-KNDAYLFSAS--G 823 (1093)
Q Consensus 750 l~~~~~d---g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s-~dg~~la~~~--d 823 (1093)
++..-.+ ....+.. .|+.++.+.........+--.......+. +++..++..+ +
T Consensus 198 l~~~~~nR~q~~~~l~~--------------------~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~ 257 (353)
T PF00930_consen 198 LWVQWLNRDQNRLDLVL--------------------CDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERD 257 (353)
T ss_dssp EEEEEEETTSTEEEEEE--------------------EEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT
T ss_pred EEEEEcccCCCEEEEEE--------------------EECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcC
Confidence 4444332 2233222 22223322221111111112222355555 7776666665 4
Q ss_pred C--eEEEEEccCceeEEEECCCCCCeEE-EEEcCCCCCEEEEEeCCC----eEEEEEcCCcceeeecccccCCeEEEEEe
Q 001352 824 G--VISLYIVMTFKTILTIMPPSPTATS-LAFNPHDNNVIAIGMDDS----TILIYNARSSEVISKLEGHSKRVTGLVFS 896 (1093)
Q Consensus 824 g--~i~iwd~~~~~~~~~~~~~~~~i~~-l~~s~~d~~~lasg~~dg----~i~iwd~~~~~~~~~l~~h~~~V~~l~~s 896 (1093)
| .|.+++..++. .+.+....-.|+. +.+++.++.+.+++..++ .++.-++.++..+..+....+.-..+.||
T Consensus 258 G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~S 336 (353)
T PF00930_consen 258 GYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFS 336 (353)
T ss_dssp SSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-
T ss_pred CCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEEC
Confidence 4 46677776665 4466655667755 678884455555666533 56666666234445555433333689999
Q ss_pred CCCCEEEEEe
Q 001352 897 DALNILVSSG 906 (1093)
Q Consensus 897 ~dg~~l~s~s 906 (1093)
|+|++++...
T Consensus 337 pdg~y~v~~~ 346 (353)
T PF00930_consen 337 PDGKYYVDTY 346 (353)
T ss_dssp TTSSEEEEEE
T ss_pred CCCCEEEEEE
Confidence 9999987543
No 325
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.44 E-value=5.2e-07 Score=62.84 Aligned_cols=39 Identities=31% Similarity=0.595 Sum_probs=37.0
Q ss_pred cceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEe
Q 001352 877 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 915 (1093)
Q Consensus 877 ~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd 915 (1093)
|+++..+.+|.+.|++++|+|++++|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 326
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.43 E-value=0.00042 Score=67.26 Aligned_cols=144 Identities=13% Similarity=0.093 Sum_probs=94.5
Q ss_pred eecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcCCEE
Q 001352 342 DFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIV 421 (1093)
Q Consensus 342 ~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d~~i 421 (1093)
..-||.+.+++.|+..+.++--|..+|+..-+.. -+..|.+-+.- -|.+++.|+..|.+
T Consensus 17 VV~~dskT~v~igSHs~~~~avd~~sG~~~We~i--------------------lg~RiE~sa~v-vgdfVV~GCy~g~l 75 (354)
T KOG4649|consen 17 VVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI--------------------LGVRIECSAIV-VGDFVVLGCYSGGL 75 (354)
T ss_pred EEecCCceEEEEecCCceEEEecCCCCcEEeehh--------------------hCceeeeeeEE-ECCEEEEEEccCcE
Confidence 3445667789999999999999999998765311 11223222221 47789999999999
Q ss_pred EEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCcc
Q 001352 422 QLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIH 501 (1093)
Q Consensus 422 ~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 501 (1093)
++-+.++|+.......+..- -......+++. ++..|+.|++.+..|..+..++.+.+...+...+-++.+- + .
T Consensus 76 Yfl~~~tGs~~w~f~~~~~v---k~~a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g-~-~ 148 (354)
T KOG4649|consen 76 YFLCVKTGSQIWNFVILETV---KVRAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPG-D-G 148 (354)
T ss_pred EEEEecchhheeeeeehhhh---ccceEEcCCCc--eEEEecCCCcEEEecccccceEEecccCCceeccceecCC-C-c
Confidence 99999999766543322211 11234566777 8999999999999999999999887644333323333322 2 2
Q ss_pred EEEEEecCCeEE
Q 001352 502 FIFSISVDGKIK 513 (1093)
Q Consensus 502 ~l~s~~~dg~i~ 513 (1093)
.|..+...|.+.
T Consensus 149 sly~a~t~G~vl 160 (354)
T KOG4649|consen 149 SLYAAITAGAVL 160 (354)
T ss_pred eEEEEeccceEE
Confidence 344444455443
No 327
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.43 E-value=4.7e-06 Score=94.09 Aligned_cols=180 Identities=16% Similarity=0.177 Sum_probs=132.2
Q ss_pred CCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEE
Q 001352 814 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG 892 (1093)
Q Consensus 814 dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~ 892 (1093)
++..++.|+ ...+..+|+.+.+..+...-..+.++-+.. +++++.+|...|+|.+-|..+.+.++++.+|++.|..
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 344555555 577888999988887776655555655555 6789999999999999999999999999999999976
Q ss_pred EEEeCCCCEEEEEeC---------CCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCC--CEEEEEeCCeEE
Q 001352 893 LVFSDALNILVSSGG---------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ--TRFLLVHETHLA 961 (1093)
Q Consensus 893 l~~s~dg~~l~s~s~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg--~~l~~~~d~~i~ 961 (1093)
+.. .|+.|+++|. |.-|+|||+..-+... +++.+.+ ..-+.|.|.- +..+++..|...
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~--PI~~~~~-------P~flrf~Psl~t~~~V~S~sGq~q 291 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS--PIQFPYG-------PQFLRFHPSLTTRLAVTSQSGQFQ 291 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhccC--CcccccC-------chhhhhcccccceEEEEeccccee
Confidence 655 5899999975 4568999998743222 3333333 3457777753 344447888999
Q ss_pred EEEcCC---cceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 001352 962 IYEAEE---LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1007 (1093)
Q Consensus 962 vwd~~~---~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd 1007 (1093)
+-|..+ ...-.......+..+..+++|++|..|+.+..+|.|.+|.
T Consensus 292 ~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 292 FVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 988432 2111111222355699999999999999999999999997
No 328
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.40 E-value=3.8e-06 Score=80.97 Aligned_cols=206 Identities=16% Similarity=0.181 Sum_probs=123.2
Q ss_pred ECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcc-eeeeccc-ccCCeEEEEEeCCCCEEEEEeC-----CCcEE
Q 001352 840 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-VISKLEG-HSKRVTGLVFSDALNILVSSGG-----DAQIF 912 (1093)
Q Consensus 840 ~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~-~~~~l~~-h~~~V~~l~~s~dg~~l~s~s~-----dg~i~ 912 (1093)
+..|..+-.+-+.+- -+.-++++..||.+.+++.+.-. ...++.. |.+. -+.+....++.+.+++. -+..+
T Consensus 85 ~a~~sep~p~~~~s~-~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~ 162 (319)
T KOG4714|consen 85 LAKNSEIDPNDACTM-TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFY 162 (319)
T ss_pred eeccCCCCCcccccc-cCCceEecCCCceEEEEechHHHhhhhhcccccccc-cccceeecccEEecCCcceEeecccee
Confidence 333333333333343 45678999999999999877521 1112221 2221 11222233444443221 12356
Q ss_pred EEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE--EeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEcc-
Q 001352 913 VWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTCLKQWFPISSVPISQATFSC- 989 (1093)
Q Consensus 913 iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~--~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~- 989 (1093)
+|+++..+ .+.........|++++-.|..+.+++ +.||.+.+||.........++..|..+++.+-|.|
T Consensus 163 a~~~~p~~--------t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk 234 (319)
T KOG4714|consen 163 ANTLDPIK--------TLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPK 234 (319)
T ss_pred eecccccc--------cccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCC
Confidence 67666522 11111111134889999998777766 47789999999999888888889999999999998
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceEEEec---cccccCCCCCCCccce------------eEE-EeCCCCCCEEEEEeCC
Q 001352 990 DCRMVFTSFVDGTLSIHEASNLEVQCRIL---STAYLRPTTSCLHVYP------------HAI-AAHPLKPTQFAVGLTN 1053 (1093)
Q Consensus 990 dg~~l~t~~~dg~v~vwd~~~~~~~~~~~---~~~~~~~~~~~~~v~~------------~~~-~~~p~d~~~l~~~~~d 1053 (1093)
++..|+|+++||.+--||..+--+-.... -..|+.. +.+++ +++ +|+- -|..|++|++-
T Consensus 235 ~p~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~WLsg----D~v~s~i~i~~ll~~~~~SinsfDV-~g~~lVcgtd~ 309 (319)
T KOG4714|consen 235 NPEHLFTCSEDGSLWHWDASTTFLSISNQASVISSWLSG----DPVKSRIEITSLLPSRSLSINSFDV-LGPCLVCGTDA 309 (319)
T ss_pred CchheeEecCCCcEEEEcCCCceEEecCccccccccccC----CcccceEeeeccccccceeeeeeec-cCceEEecccc
Confidence 67899999999999999988532221111 1112222 12221 111 2332 36789999999
Q ss_pred CcEEEEe
Q 001352 1054 GEVYVIE 1060 (1093)
Q Consensus 1054 g~v~~w~ 1060 (1093)
+.|++.+
T Consensus 310 eaIyl~~ 316 (319)
T KOG4714|consen 310 EAIYLTR 316 (319)
T ss_pred ceEEEec
Confidence 9999875
No 329
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=98.39 E-value=8.2e-07 Score=83.96 Aligned_cols=134 Identities=22% Similarity=0.264 Sum_probs=96.6
Q ss_pred HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHHHhhhhhhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHHH
Q 001352 38 MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQ 117 (1093)
Q Consensus 38 ~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~ 117 (1093)
...++++|++||++.|++.+.....---... ..+.|.|++|+|+||+..++..+|+.+.|+++.|......+.++++..
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~-~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~~ 83 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELLKRN-SSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLMS 83 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHHhcC-CchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 6789999999999999999987522111111 238899999999999999999999999999997665435567788888
Q ss_pred hhcccCccc--ccccccccCCChHHHHHHHHHHHhhcccCcccccccCCCCCc-chHHHHHHHHhHHhh
Q 001352 118 LLTLDDIRD--HELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIK-RQRLRRLINQSLNWQ 183 (1093)
Q Consensus 118 l~~~~~~~~--~~~~~~~~~~~~~~R~~l~~~l~~~~~~~~~~~~~~~~~~~p-~~rL~~ll~qa~~~q 183 (1093)
++...+..+ ...+..+. ..+.|+.+.+.+.+.+-.... +| .+.|..++.+....+
T Consensus 84 lL~~~~~~~~~~s~~~~l~--~~~~~~~la~~~~~~~l~~~~---------~~~~s~L~~~~~~g~~~l 141 (145)
T PF10607_consen 84 LLAYPDPEEPLPSPYKELL--SPERREELAEEFNSAILKSYG---------LPKESPLEVILKAGLSAL 141 (145)
T ss_pred HHHcCCcccccchHHHHHh--ChHHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHHHHh
Confidence 887766554 22333222 236788888888876655332 33 567888887765443
No 330
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.32 E-value=0.0015 Score=69.49 Aligned_cols=280 Identities=14% Similarity=0.131 Sum_probs=140.0
Q ss_pred eeecCCCceEEEEEccCCc--EEEEecCCCceeEEeeeeeeecccccceeeeeeecCCC-CCeEEEEECCCCCEEEEEEc
Q 001352 341 MDFHPVQHTLLLVGTNVGD--TGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVWSPDGSLLGVAYS 417 (1093)
Q Consensus 341 ~~~spdg~~llasg~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~v~~s~dg~~las~~~ 417 (1093)
=+|.+||++||.++..||. +.+.|+.+++..+ |+... .......++|+++.++....
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q--------------------LTdg~g~~~~g~~~s~~~~~~~Yv~~ 100 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ--------------------LTDGPGDNTFGGFLSPDDRALYYVKN 100 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-----------------------SS-B-TTT-EE-TTSSEEEEEET
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE--------------------CccCCCCCccceEEecCCCeEEEEEC
Confidence 3689999988988877665 6677888887664 33322 22224667899999887767
Q ss_pred CCEEEEEEccCCCcccceEEeccccccEEEEEee--CCCCcEEEEEEc----------------------CCCcEEEEEC
Q 001352 418 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS--APCKQISVITCG----------------------DDKTIKVWDA 473 (1093)
Q Consensus 418 d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s--~d~~~l~l~s~~----------------------~d~~i~vwd~ 473 (1093)
...|+--|+.+.+.. . .+.-....+-...|. .|+. .++..- ..+.|.--|+
T Consensus 101 ~~~l~~vdL~T~e~~-~--vy~~p~~~~g~gt~v~n~d~t--~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl 175 (386)
T PF14583_consen 101 GRSLRRVDLDTLEER-V--VYEVPDDWKGYGTWVANSDCT--KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL 175 (386)
T ss_dssp TTEEEEEETTT--EE-E--EEE--TTEEEEEEEEE-TTSS--EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred CCeEEEEECCcCcEE-E--EEECCcccccccceeeCCCcc--EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence 778999999987632 2 233344555445553 4455 333221 1234556678
Q ss_pred CCCceeEEeecCCCCeEEeeecccCCccEEEEEec---CCe-EEEEEcCCCCceE-EecC--CCCceEEEEEccCCCEEE
Q 001352 474 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV---DGK-IKAWLYDSLGARV-DYDA--PGLGCTRMAYSANGRRLF 546 (1093)
Q Consensus 474 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---dg~-i~vwd~~~~~~~~-~~~~--~~~~v~~~~~s~d~~~l~ 546 (1093)
.+|+....+. -...+..+.|+|... .+|+-|-+ +.. -|+|-+++..... .+.. ....+..=-|.|||..+.
T Consensus 176 ~tG~~~~v~~-~~~wlgH~~fsP~dp-~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~ 253 (386)
T PF14583_consen 176 KTGERKVVFE-DTDWLGHVQFSPTDP-TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIW 253 (386)
T ss_dssp TT--EEEEEE-ESS-EEEEEEETTEE-EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EE
T ss_pred CCCceeEEEe-cCccccCcccCCCCC-CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEE
Confidence 8877654443 455667777776543 34444322 221 3667665433322 2222 122344556899999887
Q ss_pred EEec-CCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCC----------------CcEEEEECC
Q 001352 547 SCGT-SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD----------------HVIKIWDMN 609 (1093)
Q Consensus 547 ~~~~-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d----------------g~i~iwd~~ 609 (1093)
.-+. .+..+..|.-+|+.+++....... ........++||+.++-=+.| --|++++++
T Consensus 254 y~~~~~~~~~~~i~~~d~~t~~~~~~~~~-----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~ 328 (386)
T PF14583_consen 254 YDSYTPGGQDFWIAGYDPDTGERRRLMEM-----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVE 328 (386)
T ss_dssp EEEEETTT--EEEEEE-TTT--EEEEEEE------SEEEEEE-TTSSEEEEEE-------------------EEEEEETT
T ss_pred EEeecCCCCceEEEeeCCCCCCceEEEeC-----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccc
Confidence 6543 344467888899998876443322 233455567888877662322 156778888
Q ss_pred CCceEEEEecC--------CCCCCCceEEEecCCCEEEEEEC-CCeEEEEEc
Q 001352 610 KVQLLTTIDAG--------GGLPENPRICFNKNGTLLAVIAN-ENRIKILET 652 (1093)
Q Consensus 610 ~~~~~~~~~~~--------~~~~~v~~v~~s~~~~~l~~~~~-dg~i~iw~~ 652 (1093)
.+......... .....-....|+|||+.++..++ .|...||-+
T Consensus 329 ~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 329 AGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp TTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred cCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 77654322211 01112357899999998877665 566666543
No 331
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.28 E-value=0.00017 Score=80.10 Aligned_cols=140 Identities=10% Similarity=0.061 Sum_probs=101.7
Q ss_pred CCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEE
Q 001352 334 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 413 (1093)
Q Consensus 334 h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~la 413 (1093)
|...|.--+++..+++ ++.|+.-|.+.+|+-.+|+..... ..+-.+.+..+..|++..++|
T Consensus 32 ~~~~v~lTc~dst~~~-l~~GsS~G~lyl~~R~~~~~~~~~------------------~~~~~~~~~~~~vs~~e~lvA 92 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEY-LAMGSSAGSVYLYNRHTGEMRKLK------------------NEGATGITCVRSVSSVEYLVA 92 (726)
T ss_pred CcceEEEEEeecCCce-EEEecccceEEEEecCchhhhccc------------------ccCccceEEEEEecchhHhhh
Confidence 4446777778888886 899999999999999888766421 223456677788999999999
Q ss_pred EEEcCCEEEEEEccCCCcccceEE--e-ccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCC----ceeEEeecCC
Q 001352 414 VAYSKHIVQLYAYHGGSDARQQLE--I-DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSFEGHG 486 (1093)
Q Consensus 414 s~~~d~~i~iwd~~~~~~~~~~~~--~-~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~----~~~~~~~~h~ 486 (1093)
.|+..|.|.++-++.+..-..... . ..|...|++++|++|+. .+++|...|.|..-.+.+. ...+.+....
T Consensus 93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d 170 (726)
T KOG3621|consen 93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSED 170 (726)
T ss_pred hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccC
Confidence 999999999998887433222111 1 23778999999999999 7999999999998877762 1122333345
Q ss_pred CCeEEeee
Q 001352 487 APVYSLCP 494 (1093)
Q Consensus 487 ~~v~~~~~ 494 (1093)
+.|..+..
T Consensus 171 s~IVQlD~ 178 (726)
T KOG3621|consen 171 SEIVQLDY 178 (726)
T ss_pred cceEEeec
Confidence 55655543
No 332
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=9.1e-05 Score=83.82 Aligned_cols=206 Identities=15% Similarity=0.169 Sum_probs=132.0
Q ss_pred EEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCC-eEEEEEeCCCCEEEEEeCCCc-----EEEEeCCCCceee-
Q 001352 851 AFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALNILVSSGGDAQ-----IFVWDVDGWGIQT- 923 (1093)
Q Consensus 851 ~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~-V~~l~~s~dg~~l~s~s~dg~-----i~iwd~~~~~~~~- 923 (1093)
+|++ ++..+|.|+.+|.|.+.+-. -+.+..++++... |+.+....+..+|++.+.|+. |+||+++..+...
T Consensus 30 c~~s-~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSS-STGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcC-CCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 4566 67799999999999888743 4555778877766 555554445578999888765 9999998653332
Q ss_pred eeee---ecCC-CcccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcC----CcceeeeeecCCCCCEEEEEEccCCCEE
Q 001352 924 CRSL---QTPD-GVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAE----ELTCLKQWFPISSVPISQATFSCDCRMV 994 (1093)
Q Consensus 924 ~~~~---~~~~-~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~vwd~~----~~~~~~~~~~~h~~~v~~~~fs~dg~~l 994 (1093)
..++ .... .....+.++..++.|.+-+.+|+| .+|.|..+.-+ .|.... .......+|+.++|..|++.+
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~-~~~~~~~pITgL~~~~d~~s~ 186 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQD-YSHRGKEPITGLALRSDGKSV 186 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccccee-eeccCCCCceeeEEecCCcee
Confidence 2233 2211 111123478999999999999997 77888888532 111111 111227899999999999883
Q ss_pred EEEeCCCcEEEEEcCCCce-EEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecCCCCCCcccC
Q 001352 995 FTSFVDGTLSIHEASNLEV-QCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVL 1071 (1093)
Q Consensus 995 ~t~~~dg~v~vwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~~~~~~~ 1071 (1093)
+-+.+-..|.+|.+..... .+... ..++.--|.++++.. ..|+++ .+..|.+++.++.++.|+..
T Consensus 187 lFv~Tt~~V~~y~l~gr~p~~~~ld----------~~G~~lnCss~~~~t-~qfIca-~~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 187 LFVATTEQVMLYSLSGRTPSLKVLD----------NNGISLNCSSFSDGT-YQFICA-GSEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred EEEEecceeEEEEecCCCcceeeec----------cCCccceeeecCCCC-ccEEEe-cCceEEEEcCCCcceeeeec
Confidence 3334456799999984431 22222 112333467777632 224444 35578999998888888654
No 333
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.18 E-value=5.8e-06 Score=57.50 Aligned_cols=39 Identities=33% Similarity=0.494 Sum_probs=36.8
Q ss_pred ceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 001352 834 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYN 873 (1093)
Q Consensus 834 ~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd 873 (1093)
|+++..+.+|...|++++|+| ++.+|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 467889999999999999999 899999999999999997
No 334
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.18 E-value=0.0049 Score=65.73 Aligned_cols=300 Identities=12% Similarity=0.127 Sum_probs=135.5
Q ss_pred EEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE
Q 001352 536 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT 615 (1093)
Q Consensus 536 ~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 615 (1093)
-+|.+||+.|+.++. .++...+++.|+.+++..+...+.. .......++|+++.++-......|+-.|+.+.+...
T Consensus 41 ~~ft~dG~kllF~s~-~dg~~nly~lDL~t~~i~QLTdg~g---~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~ 116 (386)
T PF14583_consen 41 NCFTDDGRKLLFASD-FDGNRNLYLLDLATGEITQLTDGPG---DNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERV 116 (386)
T ss_dssp --B-TTS-EEEEEE--TTSS-EEEEEETTT-EEEE---SS----B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEE
T ss_pred CCcCCCCCEEEEEec-cCCCcceEEEEcccCEEEECccCCC---CCccceEEecCCCeEEEEECCCeEEEEECCcCcEEE
Confidence 367889998888664 5678889999999999887776543 222245677888888776666789999999988766
Q ss_pred EEecCCCCCCCceEEE--ecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecC
Q 001352 616 TIDAGGGLPENPRICF--NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE 693 (1093)
Q Consensus 616 ~~~~~~~~~~v~~v~~--s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1093)
........ +-...| +.|+..++-.-.... ............+.. ..
T Consensus 117 vy~~p~~~--~g~gt~v~n~d~t~~~g~e~~~~-------d~~~l~~~~~f~e~~----~a------------------- 164 (386)
T PF14583_consen 117 VYEVPDDW--KGYGTWVANSDCTKLVGIEISRE-------DWKPLTKWKGFREFY----EA------------------- 164 (386)
T ss_dssp EEE--TTE--EEEEEEEE-TTSSEEEEEEEEGG-------G-----SHHHHHHHH----HC-------------------
T ss_pred EEECCccc--ccccceeeCCCccEEEEEEEeeh-------hccCccccHHHHHHH----hh-------------------
Confidence 65544332 222344 334555432211000 000000000000000 00
Q ss_pred CCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccc-----eeEEeeecCcc
Q 001352 694 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNG-----VHLMWRWPRND 768 (1093)
Q Consensus 694 ~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg-----~v~vw~~~~~~ 768 (1093)
.|....+..--..|..++ .+ .....+..+.|+|....+++-+..| .-++|-+....
T Consensus 165 --~p~~~i~~idl~tG~~~~------------v~-----~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg 225 (386)
T PF14583_consen 165 --RPHCRIFTIDLKTGERKV------------VF-----EDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDG 225 (386)
T ss_dssp -----EEEEEEETTT--EEE------------EE-----EESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS
T ss_pred --CCCceEEEEECCCCceeE------------EE-----ecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCC
Confidence 000000000000011110 00 1345677889999887777776654 23677655321
Q ss_pred cCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe---CC---eEEEEEccCceeEEEECC
Q 001352 769 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS---GG---VISLYIVMTFKTILTIMP 842 (1093)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~---dg---~i~iwd~~~~~~~~~~~~ 842 (1093)
. . .....- ......+..=-|+|||..+..-+ .+ .|.-+|..+++......
T Consensus 226 ~--------------------~-~~~v~~--~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~- 281 (386)
T PF14583_consen 226 S--------------------N-VKKVHR--RMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLME- 281 (386)
T ss_dssp ------------------------EESS-----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEE-
T ss_pred C--------------------c-ceeeec--CCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEe-
Confidence 1 0 111100 01233444556899998887654 22 37777888876543322
Q ss_pred CCCCeEEEEEcCCCCCEEEEEeCCC----------------eEEEEEcCCcceee---------ecccccC-CeEEEEEe
Q 001352 843 PSPTATSLAFNPHDNNVIAIGMDDS----------------TILIYNARSSEVIS---------KLEGHSK-RVTGLVFS 896 (1093)
Q Consensus 843 ~~~~i~~l~~s~~d~~~lasg~~dg----------------~i~iwd~~~~~~~~---------~l~~h~~-~V~~l~~s 896 (1093)
......+-.++ |++++|-=+.|. -|+++++..++... .+.+|.. .=....||
T Consensus 282 -~p~~~H~~ss~-Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FS 359 (386)
T PF14583_consen 282 -MPWCSHFMSSP-DGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFS 359 (386)
T ss_dssp -E-SEEEEEE-T-TSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-
T ss_pred -CCceeeeEEcC-CCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccC
Confidence 22345666677 887776433321 56677887655321 1122111 12358999
Q ss_pred CCCCEEEEEe-CCCcEEEEeC
Q 001352 897 DALNILVSSG-GDAQIFVWDV 916 (1093)
Q Consensus 897 ~dg~~l~s~s-~dg~i~iwd~ 916 (1093)
|||++++-.| ..|...||-+
T Consensus 360 PDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 360 PDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp TTSSEEEEEE-TTSS-EEEEE
T ss_pred CCCCEEEEECCCCCCccEEEE
Confidence 9999876554 5666666643
No 335
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=3.9e-05 Score=86.09 Aligned_cols=188 Identities=12% Similarity=0.111 Sum_probs=130.0
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 001352 845 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC 924 (1093)
Q Consensus 845 ~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~ 924 (1093)
..++|++++ +++++-|+.+|.|++++.. +.. .+...|+.. ..+|.+++|||.||+|.|-.+.+.+....
T Consensus 40 D~is~~av~---~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 40 DAISCCAVH---DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hHHHHHHhh---cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 456777885 5799999999999999977 444 444446554 56799999999999999999988654332
Q ss_pred eeeecCCCcccCCCCceEEEEccC-----CCEEEEEeCCeEEEEEcCCcceee-eeecCCCCCEEEEEEccCCCEEEEEe
Q 001352 925 RSLQTPDGVMTLAPSETHIQFHKD-----QTRFLLVHETHLAIYEAEELTCLK-QWFPISSVPISQATFSCDCRMVFTSF 998 (1093)
Q Consensus 925 ~~~~~~~~~~~~~~~v~~~~~s~d-----g~~l~~~~d~~i~vwd~~~~~~~~-~~~~~h~~~v~~~~fs~dg~~l~t~~ 998 (1093)
.-.+ .++.+++++|| .+.+++|+...+.++.-.-..... .......++|.++.| .|.++|=++
T Consensus 109 ~df~---------rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWan 177 (846)
T KOG2066|consen 109 YDFK---------RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWAN 177 (846)
T ss_pred EecC---------CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEec
Confidence 2222 25889999998 466777544437777643211111 112233789999998 577888887
Q ss_pred CCCcEEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecC
Q 001352 999 VDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1062 (1093)
Q Consensus 999 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~ 1062 (1093)
.+| |+|||+.+++.+..+.+....+.. ...+..+.|.+ ...|+. |...+|++..+.
T Consensus 178 d~G-v~vyd~~~~~~l~~i~~p~~~~R~----e~fpphl~W~~--~~~LVI-GW~d~v~i~~I~ 233 (846)
T KOG2066|consen 178 DDG-VKVYDTPTRQRLTNIPPPSQSVRP----ELFPPHLHWQD--EDRLVI-GWGDSVKICSIK 233 (846)
T ss_pred CCC-cEEEeccccceeeccCCCCCCCCc----ccCCCceEecC--CCeEEE-ecCCeEEEEEEe
Confidence 766 899999999998888755532222 34455678886 345554 566688888887
No 336
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=0.00012 Score=75.54 Aligned_cols=250 Identities=12% Similarity=0.102 Sum_probs=142.1
Q ss_pred HHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC
Q 001352 328 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 407 (1093)
Q Consensus 328 ~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~ 407 (1093)
.+.|.+|...|..++|||...-|+..++.+..|.|.|+++..++.. +..| ..+.+++|.-
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vss-------------------y~a~-~~~wSC~wDl 245 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSS-------------------YIAY-NQIWSCCWDL 245 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeh-------------------eecc-CCceeeeecc
Confidence 5578899999999999999876788999999999999999877754 3334 7899999998
Q ss_pred CCC-EEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEee------CCCCcEEEEEEcCCCcEEEEECCC--Cce
Q 001352 408 DGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS------APCKQISVITCGDDKTIKVWDAVT--GSR 478 (1093)
Q Consensus 408 dg~-~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s------~d~~~l~l~s~~~d~~i~vwd~~~--~~~ 478 (1093)
|.. +|..|..+|.|.|||+...+.......-.-...+|..++.- +-|. +++....+ +..|++.- +..
T Consensus 246 de~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg--lLv~~lt~--l~f~ei~~s~~~~ 321 (463)
T KOG1645|consen 246 DERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG--LLVFALTV--LQFYEIVFSAECL 321 (463)
T ss_pred CCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccc--eEEeeehh--hhhhhhhccccCC
Confidence 764 66677789999999998655432211111123345444432 3344 44444433 55666432 222
Q ss_pred eEEee-cCCCCeEEeeecccCCccEEEEEecCCe------EEE-EEcCCCCceEEe-cCC-CC------ceEEEEEccCC
Q 001352 479 TYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGK------IKA-WLYDSLGARVDY-DAP-GL------GCTRMAYSANG 542 (1093)
Q Consensus 479 ~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~------i~v-wd~~~~~~~~~~-~~~-~~------~v~~~~~s~d~ 542 (1093)
...++ +..+...++..++..+ ..|++.-.+.+ +-. -|...+..+... ..+ +. .-..+.-.++.
T Consensus 322 p~vlele~pG~cismqy~~~sn-h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~n 400 (463)
T KOG1645|consen 322 PCVLELEPPGICISMQYHGVSN-HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDN 400 (463)
T ss_pred CcccccCCCcceeeeeecCccc-eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccc
Confidence 22221 1234444454443322 34444322110 000 011111111100 000 00 11123334566
Q ss_pred CEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 001352 543 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMN 609 (1093)
Q Consensus 543 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~dg~i~iwd~~ 609 (1093)
++++..+. ..+.+.+||+.+++.++++.... +|..++... ++.-++..-.|..++||..+
T Consensus 401 n~iv~~gd---~tn~lil~D~~s~evvQ~l~~~e----pv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 401 NYIVVVGD---STNELILQDPHSFEVVQTLALSE----PVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred cEEEEecC---CcceeEEeccchhheeeecccCc----ceeecceeecCCcchhhheecceEEEEecC
Confidence 66665543 36679999999999999887643 666655432 34444444456678887654
No 337
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=0.00036 Score=79.24 Aligned_cols=201 Identities=11% Similarity=0.119 Sum_probs=135.1
Q ss_pred EEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCCC-eEEEEEcCCCCCEEEEEeCCC-----eEEEEEcCCc-----
Q 001352 810 ALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPT-ATSLAFNPHDNNVIAIGMDDS-----TILIYNARSS----- 877 (1093)
Q Consensus 810 ~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~-i~~l~~s~~d~~~lasg~~dg-----~i~iwd~~~~----- 877 (1093)
++++.+..++.|+ +|.|.+.+- +.+.++.++.+... +..+-... +..+|++.+.|+ .++||++..-
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 5678888888887 688877773 34555777777766 44444433 556888877765 5899998642
Q ss_pred -cee--eeccc-----ccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCC
Q 001352 878 -EVI--SKLEG-----HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ 949 (1093)
Q Consensus 878 -~~~--~~l~~-----h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 949 (1093)
.++ .++.. ...++.+++.|.+-+.+|.|-.+|.|..+.-+--+-+..+..-...+. .+|+.+++..|+
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~----~pITgL~~~~d~ 183 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGK----EPITGLALRSDG 183 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCC----CCceeeEEecCC
Confidence 233 11112 356788999999999999999999998885443221121222222222 369999999999
Q ss_pred CE-EEEEeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEe
Q 001352 950 TR-FLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1017 (1093)
Q Consensus 950 ~~-l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~ 1017 (1093)
+. +.++.-..|.+|.+............|+..+.+..|++-...+++++ +..+.+|+.+.......+
T Consensus 184 ~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf 251 (933)
T KOG2114|consen 184 KSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAF 251 (933)
T ss_pred ceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeee
Confidence 88 55577788999999844433444666788899988887555355554 346999999855444333
No 338
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.15 E-value=6.4e-06 Score=82.68 Aligned_cols=139 Identities=16% Similarity=0.192 Sum_probs=103.9
Q ss_pred HHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEEC
Q 001352 327 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 406 (1093)
Q Consensus 327 ~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 406 (1093)
..+.|. .++.|.++.|.-.+. |+..|..+|.|...|+..+.+=. .| ..+ .--|...|+++..-
T Consensus 245 ~~qsf~-sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~-----~~-------~a~---rlyh~Ssvtslq~L 307 (425)
T KOG2695|consen 245 HQQSFQ-SKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGN-----GW-------CAQ---RLYHDSSVTSLQIL 307 (425)
T ss_pred cccccc-cchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCC-----Cc-------ceE---EEEcCcchhhhhhh
Confidence 334444 466899999999887 79999999999999998752110 00 000 11388999999987
Q ss_pred C-CCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEee--CCCCcEEEEEEcCCCcEEEEECCCCceeEEee
Q 001352 407 P-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS--APCKQISVITCGDDKTIKVWDAVTGSRTYSFE 483 (1093)
Q Consensus 407 ~-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s--~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~ 483 (1093)
. ++++|.+.+.+|+|++||..--++-.....+.||...-..+-+. +... .+++++.|...+||.+..|..+.+++
T Consensus 308 q~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg--~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 308 QFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEG--SIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred ccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccc--eEEEccCeeEEEEEecccCceeeccC
Confidence 7 88999999999999999998666533455788897655444443 3334 78899999999999999999998886
Q ss_pred c
Q 001352 484 G 484 (1093)
Q Consensus 484 ~ 484 (1093)
.
T Consensus 386 f 386 (425)
T KOG2695|consen 386 F 386 (425)
T ss_pred C
Confidence 4
No 339
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.14 E-value=4.9e-05 Score=86.18 Aligned_cols=187 Identities=14% Similarity=0.116 Sum_probs=142.7
Q ss_pred EEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEE
Q 001352 458 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 537 (1093)
Q Consensus 458 ~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~ 537 (1093)
.++.|+....+..+|+.+++..+...-..+.|.-++. +++++.+|...|+|.+-|..+.+.+.++..|.+.+..
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD-- 222 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY----NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD-- 222 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEEe----cCcEEEeecccceEEeecCCcCceeeeeeccccceee--
Confidence 5777888888999999999888877655556777754 6689999999999999999999999999999998855
Q ss_pred EccCCCEEEEEecCCC-----CceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCC-
Q 001352 538 YSANGRRLFSCGTSKE-----GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNK- 610 (1093)
Q Consensus 538 ~s~d~~~l~~~~~~~~-----~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~dg~i~iwd~~~- 610 (1093)
|+-.|+.|++||.+.. .|.+|.+||++..+.+..+.-+. ++ .-+.|.|. ...+++++..|...+-|..+
T Consensus 223 fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~---~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~l 298 (1118)
T KOG1275|consen 223 FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY---GP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATL 298 (1118)
T ss_pred eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCccccc---Cc-hhhhhcccccceEEEEecccceeecccccc
Confidence 4567899999987543 36789999999888776666544 22 44567775 45778889999999988432
Q ss_pred Cce-EEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001352 611 VQL-LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 654 (1093)
Q Consensus 611 ~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 654 (1093)
+.+ ......+...+.+..+.++++|..++.|..+|.|.+|.-..
T Consensus 299 sNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~~ 343 (1118)
T KOG1275|consen 299 SNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADRP 343 (1118)
T ss_pred CCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCCC
Confidence 111 22222222234588999999999999999999999998443
No 340
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.09 E-value=0.0036 Score=72.60 Aligned_cols=138 Identities=12% Similarity=0.107 Sum_probs=80.4
Q ss_pred cEEEEEecCCeEEEEEcCCCCceEEecCCCC------ce--EEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeee
Q 001352 501 HFIFSISVDGKIKAWLYDSLGARVDYDAPGL------GC--TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 572 (1093)
Q Consensus 501 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~------~v--~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 572 (1093)
..++.++.++.+...|..+++....+..... .+ ..+++. ++..++.+.. ++.|+-+|.++|+.+-.+
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~----~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTF----DGRLVALDAETGKQVWKF 136 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecC----CCeEEEEECCCCCEeeee
Confidence 3577777889999999988887776654332 00 011111 2245555543 667999999999988766
Q ss_pred eccccc--CCCe-EEEEEcCCCCEEEEEe---------CCCcEEEEECCCCceEEEEecCCCCC----------------
Q 001352 573 QGLQLQ--HNSV-SVVHFDTAKDQILAAG---------DDHVIKIWDMNKVQLLTTIDAGGGLP---------------- 624 (1093)
Q Consensus 573 ~~~~~~--~~~v-~~v~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~---------------- 624 (1093)
...... ...+ .+..+. +..++.++ .+|.++.+|..+|+.+..........
T Consensus 137 ~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (488)
T cd00216 137 GNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPG 214 (488)
T ss_pred cCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCC
Confidence 543300 0001 111222 24455553 36889999999999988775431100
Q ss_pred --CC-ceEEEecCCCEEEEEECCC
Q 001352 625 --EN-PRICFNKNGTLLAVIANEN 645 (1093)
Q Consensus 625 --~v-~~v~~s~~~~~l~~~~~dg 645 (1093)
.+ ...++.+.+..+++++.++
T Consensus 215 g~~vw~~pa~d~~~g~V~vg~~~g 238 (488)
T cd00216 215 GGTSWASPTYDPKTNLVYVGTGNG 238 (488)
T ss_pred CCCccCCeeEeCCCCEEEEECCCC
Confidence 01 1345555566777777665
No 341
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.00029 Score=79.37 Aligned_cols=186 Identities=13% Similarity=0.142 Sum_probs=124.7
Q ss_pred ceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCC
Q 001352 737 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 816 (1093)
Q Consensus 737 ~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 816 (1093)
.+.+.+++ ++.++.++.+|.+++++.+.+.. +. + .|... ..+|.
T Consensus 41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~~~------------------------~~-~---~~s~~------~~~Ge 84 (846)
T KOG2066|consen 41 AISCCAVH--DKFFALGTHRGAVYLTTCQGNPK------------------------TN-F---DHSSS------ILEGE 84 (846)
T ss_pred HHHHHHhh--cceeeeccccceEEEEecCCccc------------------------cc-c---ccccc------ccCCc
Confidence 34444443 56788999999999987654310 00 0 02211 56899
Q ss_pred EEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCC----CCCEEEEEeCCCeEEEEEcCCc--ceeeecccccCC
Q 001352 817 YLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH----DNNVIAIGMDDSTILIYNARSS--EVISKLEGHSKR 889 (1093)
Q Consensus 817 ~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~----d~~~lasg~~dg~i~iwd~~~~--~~~~~l~~h~~~ 889 (1093)
++++++ ||+|.|-.+.+.+...++. ...++.+++++|+ ..+.+++|+..| +.++.-.-- +.-..+..-.++
T Consensus 85 y~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~ 162 (846)
T KOG2066|consen 85 YVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGP 162 (846)
T ss_pred eEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccc
Confidence 999999 6999999998888777665 5578999999993 256888899888 777654321 111134456689
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcC
Q 001352 890 VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAE 966 (1093)
Q Consensus 890 V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~ 966 (1093)
|.++.|. |+++|-++.+| |+|||+..+...+ .++.+............+.|.++.+ |++|-..+|+|..+.
T Consensus 163 I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~--~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 163 IHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLT--NIPPPSQSVRPELFPPHLHWQDEDR-LVIGWGDSVKICSIK 233 (846)
T ss_pred eEEEEec--CcEEEEecCCC-cEEEeccccceee--ccCCCCCCCCcccCCCceEecCCCe-EEEecCCeEEEEEEe
Confidence 9999996 88999999888 9999999866443 2222222211112345667776655 566777778888776
No 342
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=98.03 E-value=2.9e-06 Score=65.28 Aligned_cols=53 Identities=34% Similarity=0.595 Sum_probs=42.5
Q ss_pred hHHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHHHhhhhhhhccCCCH
Q 001352 37 DMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDI 90 (1093)
Q Consensus 37 ~~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~~ 90 (1093)
++..++++|++|+|+.|++.+...........+ .+.|.|++|+|+||++.++.
T Consensus 4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~-~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 4 ERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCC-CchhHHHHHHHHHHHHcCCc
Confidence 478899999999999999999887432222223 48999999999999988764
No 343
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.01 E-value=0.004 Score=68.66 Aligned_cols=115 Identities=16% Similarity=0.127 Sum_probs=82.5
Q ss_pred ceEEEEccC-CCEEEEE-----eCC----eEEEEEcCCcce--eeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 001352 940 ETHIQFHKD-QTRFLLV-----HET----HLAIYEAEELTC--LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1007 (1093)
Q Consensus 940 v~~~~~s~d-g~~l~~~-----~d~----~i~vwd~~~~~~--~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd 1007 (1093)
..++.||-. ...+.+. .+| .-.+|+....+. +........+.|.+++++|+...|+.|..||+|.+||
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD 287 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD 287 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence 467788763 3444431 233 255777765543 3333334688999999999999999999999999999
Q ss_pred cCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecCCCCCC
Q 001352 1008 ASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDT 1067 (1093)
Q Consensus 1008 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~~~ 1067 (1093)
...+.....- . .+.|..++||| +|..+++|+..|.+++||+.-+..+
T Consensus 288 ~~~~~t~~~k--a----------~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALspi~ 334 (545)
T PF11768_consen 288 TTRGVTLLAK--A----------EFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALSPIK 334 (545)
T ss_pred cCCCeeeeee--e----------cccceEEEEcC-CCcEEEEEcCCceEEEEEeecCccc
Confidence 9887544221 1 24455799999 5899999999999999998654443
No 344
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.97 E-value=0.0039 Score=72.25 Aligned_cols=246 Identities=13% Similarity=0.117 Sum_probs=139.7
Q ss_pred EEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC--CCCEEEEEE---------cCC
Q 001352 351 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGSLLGVAY---------SKH 419 (1093)
Q Consensus 351 lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~--dg~~las~~---------~d~ 419 (1093)
+..++.+|.|.-+|.++|+.+-.+... .+...-..+.-+| .+..++.++ .++
T Consensus 113 V~v~~~~g~v~AlD~~TG~~~W~~~~~-----------------~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g 175 (488)
T cd00216 113 VFFGTFDGRLVALDAETGKQVWKFGNN-----------------DQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRG 175 (488)
T ss_pred EEEecCCCeEEEEECCCCCEeeeecCC-----------------CCcCcceEecCCCEEECCEEEEeccccccccCCCCc
Confidence 667788999999999999987543321 1100000011111 123444443 367
Q ss_pred EEEEEEccCCCcccceEEecc----------------cc-ccE-EEEEeeCCCCcEEEEEEcCCC---------------
Q 001352 420 IVQLYAYHGGSDARQQLEIDA----------------HV-GNV-NDLAFSAPCKQISVITCGDDK--------------- 466 (1093)
Q Consensus 420 ~i~iwd~~~~~~~~~~~~~~~----------------h~-~~v-~~~~~s~d~~~l~l~s~~~d~--------------- 466 (1093)
.+.-+|..+|+.+-....... +. ..| ...++.+.+. .++.++.++
T Consensus 176 ~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g--~V~vg~~~g~~~~~~~~~~~~~~~ 253 (488)
T cd00216 176 ALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTN--LVYVGTGNGSPWNWGGRRTPGDNL 253 (488)
T ss_pred EEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCC--EEEEECCCCCCCccCCccCCCCCC
Confidence 888899998876543211100 00 011 1234444445 455565454
Q ss_pred ---cEEEEECCCCceeEEeecCCCCeEE------eeecc--cCCc---cEEEEEecCCeEEEEEcCCCCceEEecCCCCc
Q 001352 467 ---TIKVWDAVTGSRTYSFEGHGAPVYS------LCPHA--KENI---HFIFSISVDGKIKAWLYDSLGARVDYDAPGLG 532 (1093)
Q Consensus 467 ---~i~vwd~~~~~~~~~~~~h~~~v~~------~~~~~--~~~~---~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 532 (1093)
.|.-.|..+|+.+..++.-...... ..+.. .-++ ..++.++.+|.+...|..+++.+.......
T Consensus 254 ~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~-- 331 (488)
T cd00216 254 YTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE-- 331 (488)
T ss_pred ceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec--
Confidence 7999999999998776421111110 01100 0122 267888899999999999998887654321
Q ss_pred eEEEEEccCCCEEEEEecC--------------CCCceeEEEEeCCCCeeeeeeeccccc-----CCCe--EEEEEcCCC
Q 001352 533 CTRMAYSANGRRLFSCGTS--------------KEGESFLVEWNESEGAIKRTYQGLQLQ-----HNSV--SVVHFDTAK 591 (1093)
Q Consensus 533 v~~~~~s~d~~~l~~~~~~--------------~~~~~~i~iwd~~~~~~~~~~~~~~~~-----~~~v--~~v~~~~~~ 591 (1093)
..++.+| ..++..... ...++.+.-.|..+|+.+-........ ..+. ..+. ..+
T Consensus 332 -~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g 406 (488)
T cd00216 332 -QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TAG 406 (488)
T ss_pred -cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE--ecC
Confidence 1233444 333332110 112567888999999876555432100 0011 1122 245
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEecCCC
Q 001352 592 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 622 (1093)
Q Consensus 592 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 622 (1093)
..+++++.||.|+.+|..+|+.+...+....
T Consensus 407 ~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~ 437 (488)
T cd00216 407 NLVFAGAADGYFRAFDATTGKELWKFRTPSG 437 (488)
T ss_pred CeEEEECCCCeEEEEECCCCceeeEEECCCC
Confidence 7888999999999999999999988876533
No 345
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.96 E-value=0.017 Score=66.07 Aligned_cols=252 Identities=15% Similarity=0.099 Sum_probs=138.1
Q ss_pred CceeeeecCCCceEEEEEccCCc----EEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEE
Q 001352 337 SPMSMDFHPVQHTLLLVGTNVGD----TGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 412 (1093)
Q Consensus 337 ~V~~~~~spdg~~llasg~~dg~----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~l 412 (1093)
.+...++||||++++.+-+..|. +++.|+.+|+.+.. .+ .. ..-..++|.+|++.|
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~i-----------------~~--~~~~~~~W~~d~~~~ 184 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-GI-----------------EN--PKFSSVSWSDDGKGF 184 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-EE-----------------EE--EESEEEEECTTSSEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-cc-----------------cc--cccceEEEeCCCCEE
Confidence 44467899999986666555554 99999999977643 11 10 112239999999887
Q ss_pred EEEEcC-----------CEEEEEEccCCCcccceEEecccccc--EEEEEeeCCCCcEEEEEEcCC--CcEEEEECCCC-
Q 001352 413 GVAYSK-----------HIVQLYAYHGGSDARQQLEIDAHVGN--VNDLAFSAPCKQISVITCGDD--KTIKVWDAVTG- 476 (1093)
Q Consensus 413 as~~~d-----------~~i~iwd~~~~~~~~~~~~~~~h~~~--v~~~~~s~d~~~l~l~s~~~d--~~i~vwd~~~~- 476 (1093)
+....+ ..|+.|++.++..-. ...+...... ...+..++|++.+++.+.+.. ..+.+.|+..+
T Consensus 185 ~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~ 263 (414)
T PF02897_consen 185 FYTRFDEDQRTSDSGYPRQVYRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGG 263 (414)
T ss_dssp EEEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTT
T ss_pred EEEEeCcccccccCCCCcEEEEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccC
Confidence 766432 247777877654221 1234443333 678899999996333333322 35778888775
Q ss_pred ---ceeEEeecCCCCe-EEeeecccCCccEEEEE---ecCCeEEEEEcCCCCc---eEEecCCCCceEEEEEccCCCEEE
Q 001352 477 ---SRTYSFEGHGAPV-YSLCPHAKENIHFIFSI---SVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANGRRLF 546 (1093)
Q Consensus 477 ---~~~~~~~~h~~~v-~~~~~~~~~~~~~l~s~---~~dg~i~vwd~~~~~~---~~~~~~~~~~v~~~~~s~d~~~l~ 546 (1093)
.....+......+ ..+... ++.+++.. ...+.|...++..... ...+..+...+.-..+...+.+|+
T Consensus 264 ~~~~~~~~l~~~~~~~~~~v~~~---~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lv 340 (414)
T PF02897_consen 264 SPDAKPKLLSPREDGVEYYVDHH---GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLV 340 (414)
T ss_dssp TSS-SEEEEEESSSS-EEEEEEE---TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEE
T ss_pred CCcCCcEEEeCCCCceEEEEEcc---CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEE
Confidence 2333443333333 333322 22333333 2335677777777653 224444444333333444566666
Q ss_pred EEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEE--Ee--CCCcEEEEECCCCceEE
Q 001352 547 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA--AG--DDHVIKIWDMNKVQLLT 615 (1093)
Q Consensus 547 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~--~~--~dg~i~iwd~~~~~~~~ 615 (1093)
.... .++...|+++++..+.......... .+.|..+...++++.+.. .| .-++++.||+.+++...
T Consensus 341 l~~~-~~~~~~l~v~~~~~~~~~~~~~~p~--~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~ 410 (414)
T PF02897_consen 341 LSYR-ENGSSRLRVYDLDDGKESREIPLPE--AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTL 410 (414)
T ss_dssp EEEE-ETTEEEEEEEETT-TEEEEEEESSS--SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEE
T ss_pred EEEE-ECCccEEEEEECCCCcEEeeecCCc--ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEE
Confidence 5543 3457789999998444444444433 245666665566655443 22 34678888988877643
No 346
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=97.94 E-value=1.4e-05 Score=49.05 Aligned_cols=27 Identities=33% Similarity=0.642 Sum_probs=24.6
Q ss_pred HHHHHHHHHhhhhcChHHHHHHHHHhc
Q 001352 6 KDLVFLILQFLNEEGFTESAHMLERES 32 (1093)
Q Consensus 6 ~~~~~li~q~L~~~g~~~s~~~L~~Es 32 (1093)
+++.+||++||.+.||.+||.+|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 578999999999999999999999997
No 347
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.93 E-value=0.048 Score=63.45 Aligned_cols=110 Identities=10% Similarity=0.083 Sum_probs=64.7
Q ss_pred EEEEEecCCeEEEEEcCCCCceEEecCCCC-ceE----------EEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeee
Q 001352 502 FIFSISVDGKIKAWLYDSLGARVDYDAPGL-GCT----------RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 570 (1093)
Q Consensus 502 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~v~----------~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 570 (1093)
.++.++.++.|.-.|..+++.+..+..... .+. .+++ .+..++.++. ++.|.-.|..+|+.+-
T Consensus 71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~----dg~l~ALDa~TGk~~W 144 (527)
T TIGR03075 71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTL----DARLVALDAKTGKVVW 144 (527)
T ss_pred EEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcC----CCEEEEEECCCCCEEe
Confidence 666777778888888888887776654221 111 1122 1234555443 5679999999999876
Q ss_pred eeecccccC-CCeEE-EEEcCCCCEEEEEe------CCCcEEEEECCCCceEEEEec
Q 001352 571 TYQGLQLQH-NSVSV-VHFDTAKDQILAAG------DDHVIKIWDMNKVQLLTTIDA 619 (1093)
Q Consensus 571 ~~~~~~~~~-~~v~~-v~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~ 619 (1093)
......... ..+.+ -.+. +..++++. .+|.|+-+|.++|+.+-.+..
T Consensus 145 ~~~~~~~~~~~~~tssP~v~--~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 145 SKKNGDYKAGYTITAAPLVV--KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred ecccccccccccccCCcEEE--CCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 654321000 01111 1111 33555543 268999999999998876643
No 348
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.90 E-value=0.004 Score=63.55 Aligned_cols=195 Identities=9% Similarity=0.092 Sum_probs=111.4
Q ss_pred hccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCC
Q 001352 331 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 410 (1093)
Q Consensus 331 l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~ 410 (1093)
|.+-.++++.++|.|+.+.|+|+....+.|...+. +|+.++..+ +.+ -+..-.|++..++.
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~-----------------l~g-~~D~EgI~y~g~~~ 77 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIP-----------------LDG-FGDYEGITYLGNGR 77 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE------------------SS--SSEEEEEE-STTE
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEe-----------------CCC-CCCceeEEEECCCE
Confidence 44555689999999998778999888999988886 577776543 333 35678899988888
Q ss_pred EEEEEEcCCEEEEEEccCCCcccce-----EEec---cccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCC---Ccee
Q 001352 411 LLGVAYSKHIVQLYAYHGGSDARQQ-----LEID---AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT---GSRT 479 (1093)
Q Consensus 411 ~las~~~d~~i~iwd~~~~~~~~~~-----~~~~---~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~---~~~~ 479 (1093)
++++--.++.+.++++......... ..+. .+...+-.++|.+.++. |+.+-...-..++.+.. +..+
T Consensus 78 ~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~~~~ 155 (248)
T PF06977_consen 78 YVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGGFDL 155 (248)
T ss_dssp EEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-SS--
T ss_pred EEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCccce
Confidence 8877666899999998443211111 1111 24456899999999884 44455555566665543 2222
Q ss_pred EEe--------ecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC---------CceEEEEEccCC
Q 001352 480 YSF--------EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG---------LGCTRMAYSANG 542 (1093)
Q Consensus 480 ~~~--------~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---------~~v~~~~~s~d~ 542 (1093)
... ......+.++++++. .+++++.......|..+| ..++.+..+.... ...-.++|.++|
T Consensus 156 ~~~~~~~~~~~~~~~~d~S~l~~~p~-t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G 233 (248)
T PF06977_consen 156 FVSDDQDLDDDKLFVRDLSGLSYDPR-TGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG 233 (248)
T ss_dssp EEEE-HHHH-HT--SS---EEEEETT-TTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT-
T ss_pred eeccccccccccceeccccceEEcCC-CCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCC
Confidence 111 123445778888765 557888888888999998 4444443333222 246789999999
Q ss_pred CEEEEE
Q 001352 543 RRLFSC 548 (1093)
Q Consensus 543 ~~l~~~ 548 (1093)
+..++.
T Consensus 234 ~LYIvs 239 (248)
T PF06977_consen 234 NLYIVS 239 (248)
T ss_dssp -EEEEE
T ss_pred CEEEEc
Confidence 776664
No 349
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.87 E-value=0.0006 Score=74.94 Aligned_cols=114 Identities=14% Similarity=0.165 Sum_probs=82.2
Q ss_pred CCeeEEEEcc-CCCEEEEEe-----CCe----EEEEEccCceeEEE---ECCCCCCeEEEEEcCCCCCEEEEEeCCCeEE
Q 001352 804 EAVPCFALSK-NDAYLFSAS-----GGV----ISLYIVMTFKTILT---IMPPSPTATSLAFNPHDNNVIAIGMDDSTIL 870 (1093)
Q Consensus 804 ~~v~~l~~s~-dg~~la~~~-----dg~----i~iwd~~~~~~~~~---~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~ 870 (1093)
....++.||. +...+.+.. +|. -.+|++...+..+. --.....+.+++++| +...|+.|+.||+|.
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSii 284 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSII 284 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEE
Confidence 3446677776 333444332 232 46777765543221 124677899999999 889999999999999
Q ss_pred EEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc
Q 001352 871 IYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG 920 (1093)
Q Consensus 871 iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~ 920 (1093)
+||...+.. .+..+.-.++.++|+|+|..+++|+..|.+.+||+.-..
T Consensus 285 LyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 285 LYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 999876532 233345567889999999999999999999999997643
No 350
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.86 E-value=0.00098 Score=74.29 Aligned_cols=195 Identities=19% Similarity=0.163 Sum_probs=116.3
Q ss_pred HHHhhccCCCCceeeeecCCCceEEEEEccC---CcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEE
Q 001352 327 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV---GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 403 (1093)
Q Consensus 327 ~~~~l~~h~~~V~~~~~spdg~~llasg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 403 (1093)
..+.+..-...+..-+|+|+++.+....-.. ..+.++|+++++.....+ -.+.-..-
T Consensus 184 ~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--------------------~~g~~~~P 243 (425)
T COG0823 184 NQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN--------------------FNGNNGAP 243 (425)
T ss_pred ceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec--------------------cCCccCCc
Confidence 3344554555788889999998744443222 359999999988765433 22344557
Q ss_pred EECCCCCEEEEEE-cCC--EEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCc--EEEEECCCCce
Q 001352 404 VWSPDGSLLGVAY-SKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT--IKVWDAVTGSR 478 (1093)
Q Consensus 404 ~~s~dg~~las~~-~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~--i~vwd~~~~~~ 478 (1093)
+|||||++||.+. .|+ .|.+.|+.++...+ +..-.+.-+.-.|+|||++ ++++.+..|. |.+.|.+.+..
T Consensus 244 ~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~----Lt~~~gi~~~Ps~spdG~~-ivf~Sdr~G~p~I~~~~~~g~~~ 318 (425)
T COG0823 244 AFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR----LTNGFGINTSPSWSPDGSK-IVFTSDRGGRPQIYLYDLEGSQV 318 (425)
T ss_pred cCCCCCCEEEEEECCCCCccEEEEcCCCCccee----cccCCccccCccCCCCCCE-EEEEeCCCCCcceEEECCCCCce
Confidence 8999999998774 444 47777887765222 3333333346789999997 3444555554 55566666554
Q ss_pred eEEeecCCCCeEEeeecccCCccEEEEEecC-Ce--EEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEec
Q 001352 479 TYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 550 (1093)
Q Consensus 479 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-g~--i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 550 (1093)
..+......-. ....++||.+++..+.. |. |.+.|+.+... ............-.+.++|+.+...+.
T Consensus 319 -~riT~~~~~~~--~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 319 -TRLTFSGGGNS--NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred -eEeeccCCCCc--CccCCCCCCEEEEEeccCCceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceEEEecc
Confidence 32322211111 22336677888777643 44 55566655543 222222223345678888888887654
No 351
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=97.86 E-value=2.2e-05 Score=52.52 Aligned_cols=32 Identities=34% Similarity=0.552 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHhhhhcChHHHHHHHHHhcCCC
Q 001352 4 LNKDLVFLILQFLNEEGFTESAHMLERESRFY 35 (1093)
Q Consensus 4 ~~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~ 35 (1093)
.++++.++|+|||...||.+|+++|++|+|+.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 36789999999999999999999999999974
No 352
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.86 E-value=0.0038 Score=72.83 Aligned_cols=222 Identities=14% Similarity=0.108 Sum_probs=118.0
Q ss_pred CCeEEEEEcCCCCCEEEEEe------CCC--eEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCC-CcEEEEe
Q 001352 845 PTATSLAFNPHDNNVIAIGM------DDS--TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD-AQIFVWD 915 (1093)
Q Consensus 845 ~~i~~l~~s~~d~~~lasg~------~dg--~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~d-g~i~iwd 915 (1093)
..+...++|| +++.+|... .|+ .|.+++.. +.......+. ..+.-.|+|||+.|++.+.. ..+++.+
T Consensus 350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence 4678999999 777776554 243 55555642 3332222332 37889999999988877543 2233332
Q ss_pred CCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEE---EEcCCcce-e---eeeecCCCCCEEEEEEc
Q 001352 916 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAI---YEAEELTC-L---KQWFPISSVPISQATFS 988 (1093)
Q Consensus 916 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~v---wd~~~~~~-~---~~~~~~h~~~v~~~~fs 988 (1093)
-..........+............|..+.|||||+.+|...+++|.+ -....|+. + ..+..+-...+.++.|.
T Consensus 426 ~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~ 505 (591)
T PRK13616 426 DPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWR 505 (591)
T ss_pred cCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccceEe
Confidence 21110000000000000001123699999999999999976788877 45455541 1 11222223446889999
Q ss_pred cCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecCCCCCCc
Q 001352 989 CDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTW 1068 (1093)
Q Consensus 989 ~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~~~~ 1068 (1093)
.+++++ ++..++...+|.+.-.-......+...+. ..+ .+++-+| ..+.++..+|.+.+=.-......|
T Consensus 506 ~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~-----~~v--~~vaa~~---~~iyv~~~~g~~~l~~~~~~~~~W 574 (591)
T PRK13616 506 TGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLS-----APV--VAVAASP---STVYVTDARAVLQLPNSDSGDQYW 574 (591)
T ss_pred cCCEEE-EEecCCCCceEEEecCCccccccCCCCcc-----Cce--EEEecCC---ceEEEEcCCceEEecCCCCCCCCc
Confidence 999865 55555555566554432222221111011 112 3456555 246666777744444333445568
Q ss_pred ccCCCccccCCCC
Q 001352 1069 AVLPPDEIVGDQP 1081 (1093)
Q Consensus 1069 ~~~~~~~~~~~~~ 1081 (1093)
...+...-....|
T Consensus 575 ~ev~~l~g~~~~p 587 (591)
T PRK13616 575 REVPGLMGPRAAP 587 (591)
T ss_pred eECccccCCCccc
Confidence 7777665444433
No 353
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.84 E-value=0.0049 Score=68.06 Aligned_cols=278 Identities=12% Similarity=0.130 Sum_probs=142.0
Q ss_pred ceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCC
Q 001352 737 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 816 (1093)
Q Consensus 737 ~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 816 (1093)
.|..+.|+++...++++...|.|.+|++..++......... -..+.+.+-
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~----------------------------~~~~~~~~~-- 52 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPP----------------------------DLDYNFRRF-- 52 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE----------------------------------------------S---
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCc----------------------------ccCcccccc--
Confidence 47889999998899999999999999998764322000000 000000000
Q ss_pred EEEEEeCCeEEEEEccC---------ceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeee--ccc
Q 001352 817 YLFSASGGVISLYIVMT---------FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK--LEG 885 (1093)
Q Consensus 817 ~la~~~dg~i~iwd~~~---------~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~--l~~ 885 (1093)
...++.-.+-|+.. ......+....++|++++.|. =-++|+|..+|.+.|.|++....+.. +..
T Consensus 53 ---~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S~--iGFvaigy~~G~l~viD~RGPavI~~~~i~~ 127 (395)
T PF08596_consen 53 ---SLNNSPGKLTDISDRAPPSLKEGFLPLTLLDAKQGPVTALKNSD--IGFVAIGYESGSLVVIDLRGPAVIYNENIRE 127 (395)
T ss_dssp ----GGGSS-SEEE-GGG--TT-SEEEEEEEEE---S-SEEEEEE-B--TSEEEEEETTSEEEEEETTTTEEEEEEEGGG
T ss_pred ---cccCCCcceEEehhhCCcccccccCchhheeccCCcEeEEecCC--CcEEEEEecCCcEEEEECCCCeEEeeccccc
Confidence 00000111112111 122333444578999999984 44999999999999999987666543 222
Q ss_pred ------ccCCeEEEEEeC-----CC---CEEEEEeCCCcEEEEeCCC-Cce-eeeeeeecCCCcccCCCCceEEE-EccC
Q 001352 886 ------HSKRVTGLVFSD-----AL---NILVSSGGDAQIFVWDVDG-WGI-QTCRSLQTPDGVMTLAPSETHIQ-FHKD 948 (1093)
Q Consensus 886 ------h~~~V~~l~~s~-----dg---~~l~s~s~dg~i~iwd~~~-~~~-~~~~~~~~~~~~~~~~~~v~~~~-~s~d 948 (1093)
....|+++.|+. |+ -.|++|...|.+.+|.+.. ... -..........+. ..+..+. |+.+
T Consensus 128 ~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~---~~i~~I~~i~~~ 204 (395)
T PF08596_consen 128 SFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHD---SPILSIIPINAD 204 (395)
T ss_dssp --T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS-------EEEEEETT
T ss_pred cccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCC---CceEEEEEEECC
Confidence 344688898872 33 4688889999999998852 111 1111111111111 2343333 3222
Q ss_pred ---------------------CCEEEEEeCCeEEEEEcCCcceeeeeecCCCCCEEEEEE-----ccCCCEEEEEeCCCc
Q 001352 949 ---------------------QTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATF-----SCDCRMVFTSFVDGT 1002 (1093)
Q Consensus 949 ---------------------g~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~f-----s~dg~~l~t~~~dg~ 1002 (1093)
..+++++++..++++...+.+...+.. ........+++ ...+..|++-..+|.
T Consensus 205 ~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~ 283 (395)
T PF08596_consen 205 TGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGS 283 (395)
T ss_dssp T--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSE
T ss_pred CCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCc
Confidence 125666889999999999888776655 22233344455 236778899999999
Q ss_pred EEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEec
Q 001352 1003 LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1061 (1093)
Q Consensus 1003 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~ 1061 (1093)
|+++.++..+.+.......... ...+. ..++++ +|+.+... ....+.++.+
T Consensus 284 i~i~SLP~Lkei~~~~l~~~~d----~~~~~--~ssis~-~Gdi~~~~-gpsE~~l~sv 334 (395)
T PF08596_consen 284 IRIYSLPSLKEIKSVSLPPPLD----SRRLS--SSSISR-NGDIFYWT-GPSEIQLFSV 334 (395)
T ss_dssp EEEEETTT--EEEEEE-SS-------HHHHT--T-EE-T-TS-EEEE--SSSEEEEEEE
T ss_pred EEEEECCCchHhhcccCCCccc----ccccc--ccEECC-CCCEEEEe-CcccEEEEEE
Confidence 9999999999988877332111 11122 234555 46654444 4445444444
No 354
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.79 E-value=0.0043 Score=68.52 Aligned_cols=254 Identities=13% Similarity=0.121 Sum_probs=133.3
Q ss_pred CceeeeecCCCceEEEEEccCCcEEEEecCCCceeE------Ee------------eeeeeeccccc------ceeeeee
Q 001352 337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLF------IR------------NFKVWDIGACS------MLFKTAL 392 (1093)
Q Consensus 337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~------~~------------~~~~~~~~~~~------~~~~~~~ 392 (1093)
.|+++.|+++... ||+|...|.|.||.+...+.-. .. +-++-|+.... ......+
T Consensus 3 ~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTE-EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 6899999999775 8999999999999875432221 00 11222333211 2233445
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEecc------ccccEEEEEee---C--CC-CcEEEE
Q 001352 393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDA------HVGNVNDLAFS---A--PC-KQISVI 460 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~------h~~~v~~~~~s---~--d~-~~l~l~ 460 (1093)
+....++|++++.| |=-++|.|+.+|.+.|.|+.....+.. ..+.. ....|+++.|+ . |+ ..+.++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~-~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYN-ENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEE-EEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEee-ccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 66678999999998 666999999999999999977654432 12222 33468888886 2 22 225788
Q ss_pred EEcCCCcEEEEECC--C-CceeEE----eecCCCCeEEeeecccCCc-------------------cEEEEEecCCeEEE
Q 001352 461 TCGDDKTIKVWDAV--T-GSRTYS----FEGHGAPVYSLCPHAKENI-------------------HFIFSISVDGKIKA 514 (1093)
Q Consensus 461 s~~~d~~i~vwd~~--~-~~~~~~----~~~h~~~v~~~~~~~~~~~-------------------~~l~s~~~dg~i~v 514 (1093)
.|...|.+.+|.+. . +..... ...+.++|..+......+| .-++....+..+++
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 89999999999764 1 222111 1246677766653211111 22455566788999
Q ss_pred EEcCCCCceEEecCCCCceEEEEEc-----cCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccc-cCCCeEEEEEc
Q 001352 515 WLYDSLGARVDYDAPGLGCTRMAYS-----ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL-QHNSVSVVHFD 588 (1093)
Q Consensus 515 wd~~~~~~~~~~~~~~~~v~~~~~s-----~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~v~~~ 588 (1093)
+...+.+...........+..+++- ..+..|++... ++.++++.+..-+.+..+.-... ....+....++
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~----~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis 315 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFN----NGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSIS 315 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEET----TSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-
T ss_pred EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEEC----CCcEEEEECCCchHhhcccCCCccccccccccEEC
Confidence 9888776665544332334445553 24555555554 66799999988777766655320 11223445566
Q ss_pred CCCCEEEEE
Q 001352 589 TAKDQILAA 597 (1093)
Q Consensus 589 ~~~~~l~~~ 597 (1093)
++|..++-.
T Consensus 316 ~~Gdi~~~~ 324 (395)
T PF08596_consen 316 RNGDIFYWT 324 (395)
T ss_dssp TTS-EEEE-
T ss_pred CCCCEEEEe
Confidence 666644444
No 355
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.75 E-value=0.019 Score=64.50 Aligned_cols=199 Identities=17% Similarity=0.169 Sum_probs=109.8
Q ss_pred EEEccCCCEEEEEeCC------------eEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC
Q 001352 809 FALSKNDAYLFSASGG------------VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS 876 (1093)
Q Consensus 809 l~~s~dg~~la~~~dg------------~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~ 876 (1093)
++.+|.|..+|...+. .|+||+.. |+.+..+.-..+.+.++.|+. +. .|++...||.+++||+.
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~-~e-~LvvV~~dG~v~vy~~~- 109 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTD-DE-ELVVVQSDGTVRVYDLF- 109 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECC-CC-eEEEEEcCCEEEEEeCC-
Confidence 4566666666666544 58899875 666666543348999999997 44 55567789999999986
Q ss_pred cce-------eeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeee-ecCCCcccC--CCCceE-EEE
Q 001352 877 SEV-------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSL-QTPDGVMTL--APSETH-IQF 945 (1093)
Q Consensus 877 ~~~-------~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~--~~~v~~-~~~ 945 (1093)
|+. +....-....+....+..+|-.+.+ .++.+.+-+--.... ..+.. ..+...... ...... ..+
T Consensus 110 G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n~~~~~-~~~~~~~~p~~~~~~~~~~~~~~i~~l 186 (410)
T PF04841_consen 110 GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNNIDEPV-KLRRLPEIPGLWTKFHWWPSWTVIPLL 186 (410)
T ss_pred CceeechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeCccccc-hhhccccCCCcccccccccccccceEe
Confidence 333 1111112222333344445533333 344333332211110 00111 111110000 001111 234
Q ss_pred ccCCCEEEE-EeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEecc
Q 001352 946 HKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1019 (1093)
Q Consensus 946 s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~ 1019 (1093)
+.+....+. ..++.+.+.+....+. . ...+++..+++||+|++||.-..+|.+.+.+.+-.+..+.+..
T Consensus 187 ~~~~~~~i~~~~g~~i~~i~~~~~~~----i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~ 256 (410)
T PF04841_consen 187 SSDRVVEILLANGETIYIIDENSFKQ----I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDT 256 (410)
T ss_pred ecCcceEEEEecCCEEEEEEcccccc----c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeec
Confidence 555554444 4445566444332211 1 1246899999999999999999999999998887777777763
No 356
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.74 E-value=0.015 Score=59.46 Aligned_cols=201 Identities=11% Similarity=0.080 Sum_probs=111.6
Q ss_pred CCCCeeEEEEccCCCEEEEEeC--CeEEEEEccCceeEEEECCC-CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcc
Q 001352 802 SQEAVPCFALSKNDAYLFSASG--GVISLYIVMTFKTILTIMPP-SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 878 (1093)
Q Consensus 802 ~~~~v~~l~~s~dg~~la~~~d--g~i~iwd~~~~~~~~~~~~~-~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~ 878 (1093)
-...+..++|.|+...|++..| +.|..++. +|+.++++.-. .+..-.+++.. ++.++++--.++.+.++++....
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE----
T ss_pred ccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEEeccc
Confidence 4556999999998776666653 77877786 57888876533 35788899987 77777766668999999984321
Q ss_pred ------eeeecc-----cccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC---CceeeeeeeecCCCcccCCCCceEEE
Q 001352 879 ------VISKLE-----GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG---WGIQTCRSLQTPDGVMTLAPSETHIQ 944 (1093)
Q Consensus 879 ------~~~~l~-----~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~ 944 (1093)
....+. .+...+-.++|.|.++.|+.+-+..-..|+.+.. .....................+.+++
T Consensus 98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~ 177 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLS 177 (248)
T ss_dssp TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEE
T ss_pred cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceE
Confidence 111121 2455689999999988888887777777777764 11111000111110111112478999
Q ss_pred EccCCCEEEE-E-eCCeEEEEEcCCcceeeeeec--C-C-----CCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 001352 945 FHKDQTRFLL-V-HETHLAIYEAEELTCLKQWFP--I-S-----SVPISQATFSCDCRMVFTSFVDGTLSIH 1006 (1093)
Q Consensus 945 ~s~dg~~l~~-~-~d~~i~vwd~~~~~~~~~~~~--~-h-----~~~v~~~~fs~dg~~l~t~~~dg~v~vw 1006 (1093)
+.|....|.+ + .+..|..+| .+|+.+..+.- + | -...-.|+|.++|++.++ ++-+..+++
T Consensus 178 ~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 178 YDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp EETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 9998766655 5 456788888 55665544322 1 1 135778999999976664 466655554
No 357
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.74 E-value=0.0037 Score=69.96 Aligned_cols=225 Identities=9% Similarity=0.042 Sum_probs=118.7
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352 393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 472 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 472 (1093)
+......+..+.++|+|+++++ +.+|.-.|+..... +. ...+.-..++|.+.++ +++-...++|.|+.
T Consensus 28 lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~---r~-----k~~G~g~~~vw~~~n~---yAv~~~~~~I~I~k 95 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAW---RN-----KAFGSGLSFVWSSRNR---YAVLESSSTIKIYK 95 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTT---EE-----EEEEE-SEEEE-TSSE---EEEE-TTS-EEEEE
T ss_pred CCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCC---cc-----cccCceeEEEEecCcc---EEEEECCCeEEEEE
Confidence 3345556889999999999999 56777888873322 21 1234456788999665 66666688899974
Q ss_pred CCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001352 473 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 552 (1093)
Q Consensus 473 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~ 552 (1093)
--+.+....++. ...+..+.. |.+|...+ ++.|.+||+.+.+.+..+... +|..+.|+++|.+++..+.
T Consensus 96 n~~~~~~k~i~~-~~~~~~If~-----G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~-- 164 (443)
T PF04053_consen 96 NFKNEVVKSIKL-PFSVEKIFG-----GNLLGVKS-SDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTK-- 164 (443)
T ss_dssp TTEE-TT------SS-EEEEE------SSSEEEEE-TTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--
T ss_pred cCccccceEEcC-CcccceEEc-----CcEEEEEC-CCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeC--
Confidence 333333333331 122333321 44555554 448999999999888888755 3889999999999998873
Q ss_pred CCceeEEEEeCCCC-----------eeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCC
Q 001352 553 EGESFLVEWNESEG-----------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 621 (1093)
Q Consensus 553 ~~~~~i~iwd~~~~-----------~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 621 (1093)
..+++++.... .....+.... ..|.+.+|..+ .++-.+.. .++. +-.|+.-......
T Consensus 165 ---~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~---~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld- 232 (443)
T PF04053_consen 165 ---DSIYILKYNLEAVAAIPEEGVEDAFELIHEIS---ERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLD- 232 (443)
T ss_dssp ----SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-S-
T ss_pred ---CeEEEEEecchhcccccccCchhceEEEEEec---ceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcC-
Confidence 23666654322 0122222112 56888888765 44444444 6665 3344433222222
Q ss_pred CCCCCceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001352 622 GLPENPRICFNKNGTLLAVIANENRIKILETPE 654 (1093)
Q Consensus 622 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 654 (1093)
.++.-+.+.+..+.+.....++.+..+.+..
T Consensus 233 --~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 233 --KPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp --S--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred --CceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 2366677888778888888888888887763
No 358
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=0.011 Score=66.07 Aligned_cols=206 Identities=13% Similarity=0.159 Sum_probs=145.0
Q ss_pred eeEEEEccCCCEEEEEe--CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeC---CCeEEEEEcCCccee
Q 001352 806 VPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD---DSTILIYNARSSEVI 880 (1093)
Q Consensus 806 v~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~---dg~i~iwd~~~~~~~ 880 (1093)
...+++++++..+.... ++.|.+.|..+.+......... ....++++| +++.+.++.. ++.+.+.|..+++..
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 45678888888555554 5899999988777776655332 667899999 6655555544 689999999998887
Q ss_pred eecccccCCeEEEEEeCCCCEEEEE-eCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE--eC
Q 001352 881 SKLEGHSKRVTGLVFSDALNILVSS-GGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HE 957 (1093)
Q Consensus 881 ~~l~~h~~~V~~l~~s~dg~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~d 957 (1093)
.....-..+ ..++++|+|+.+..+ ..++.|.+.|.++..... . ..............++++|+|.++.+. .+
T Consensus 154 ~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~---~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~ 228 (381)
T COG3391 154 ATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-G---SVGSLVGVGTGPAGIAVDPDGNRVYVANDGS 228 (381)
T ss_pred EEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-c---ccccccccCCCCceEEECCCCCEEEEEeccC
Confidence 775433334 889999999966554 478899999987754321 1 100011111245789999999987773 22
Q ss_pred --CeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCC-CcEEEEEcCCCceEEEec
Q 001352 958 --THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-GTLSIHEASNLEVQCRIL 1018 (1093)
Q Consensus 958 --~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~d-g~v~vwd~~~~~~~~~~~ 1018 (1093)
+.+...|..++.........-......+.++|+|+.+.+.... +.+.+-|..+......+.
T Consensus 229 ~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 229 GSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred CCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 5899999998887765222211145678999999998887544 889999999988876655
No 359
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.72 E-value=0.017 Score=57.55 Aligned_cols=256 Identities=16% Similarity=0.165 Sum_probs=140.7
Q ss_pred eEEEEEcCCCCE-EEEEeCCCc-EEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECC-----CeEEEEEcCC
Q 001352 582 VSVVHFDTAKDQ-ILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-----NRIKILETPE 654 (1093)
Q Consensus 582 v~~v~~~~~~~~-l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iw~~~~ 654 (1093)
-..++|+|.... ++.+-.-|+ ..++|..+.+...++........--.-+|||||++|+..-.| |.|-|||...
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence 445778887544 344555554 568999988887777654332222345799999999876543 6778888763
Q ss_pred C-ceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccc
Q 001352 655 S-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKV 733 (1093)
Q Consensus 655 ~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~ 733 (1093)
+ ..+..+..
T Consensus 150 ~fqrvgE~~t---------------------------------------------------------------------- 159 (366)
T COG3490 150 GFQRVGEFST---------------------------------------------------------------------- 159 (366)
T ss_pred ccceeccccc----------------------------------------------------------------------
Confidence 3 11111111
Q ss_pred cccceEEEEeecCCceEEEeeccceeEEe-eecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEc
Q 001352 734 KANKISRLTYNNGGQAIFALASNGVHLMW-RWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS 812 (1093)
Q Consensus 734 ~~~~i~~l~~s~~g~~l~~~~~dg~v~vw-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 812 (1093)
|.-.-..+.+.+||+.++.+.. -|..- ++...+++.+.- ..++.+.+..+|..+....++..-+...++.++..
T Consensus 160 ~GiGpHev~lm~DGrtlvvanG--GIethpdfgR~~lNldsM---ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g 234 (366)
T COG3490 160 HGIGPHEVTLMADGRTLVVANG--GIETHPDFGRTELNLDSM---EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIG 234 (366)
T ss_pred CCcCcceeEEecCCcEEEEeCC--ceecccccCccccchhhc---CccEEEEeccccchhhhccCchhhhhcceeeeeeC
Confidence 1112234556667765554432 22222 111111111000 01233445566665666666644477789999999
Q ss_pred cCCCEEEEEe-CC----e-EEEEEccCceeEEEECCC-------CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcce
Q 001352 813 KNDAYLFSAS-GG----V-ISLYIVMTFKTILTIMPP-------SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 879 (1093)
Q Consensus 813 ~dg~~la~~~-dg----~-i~iwd~~~~~~~~~~~~~-------~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~ 879 (1093)
+||..++.+. .| . --+=-...++.+.-+... ...|-+++.+.+++-..+|.-..+...+||..+|.+
T Consensus 235 ~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~v 314 (366)
T COG3490 235 RDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAV 314 (366)
T ss_pred CCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcE
Confidence 9998887764 11 1 112222334444443322 246778888874555555555566888999999987
Q ss_pred eeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeC
Q 001352 880 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDV 916 (1093)
Q Consensus 880 ~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~ 916 (1093)
+..-.-- ....++ +...-++..+.+|.+.++.-
T Consensus 315 v~~a~l~--daaGva--~~~~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 315 VSEAALP--DAAGVA--AAKGGFAVSSGQGRIIFYSR 347 (366)
T ss_pred Eeccccc--ccccce--eccCceEEecCCceEEeccc
Confidence 7543211 111122 23444555667787887743
No 360
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.71 E-value=0.027 Score=64.41 Aligned_cols=248 Identities=13% Similarity=0.125 Sum_probs=127.3
Q ss_pred CeEEEEECCCCCEEEEE-EcCC----EEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEE-cC--------
Q 001352 399 SVNRVVWSPDGSLLGVA-YSKH----IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC-GD-------- 464 (1093)
Q Consensus 399 ~V~~v~~s~dg~~las~-~~d~----~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~-~~-------- 464 (1093)
.+..+++||||+++|.+ +..| .++++|+.+|+.+.. .+... ....+.|.+|++. ++.+. ..
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d--~i~~~--~~~~~~W~~d~~~-~~y~~~~~~~~~~~~~ 199 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD--GIENP--KFSSVSWSDDGKG-FFYTRFDEDQRTSDSG 199 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE--EEEEE--ESEEEEECTTSSE-EEEEECSTTTSS-CCG
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC--ccccc--ccceEEEeCCCCE-EEEEEeCcccccccCC
Confidence 44568899999999977 3333 599999999865432 12211 1123999999985 33333 22
Q ss_pred -CCcEEEEECCCCcee--EEeecCCCCeEEeeecccCCccEEEEEecCC----eEEEEEcCCC----CceEEecCCCCce
Q 001352 465 -DKTIKVWDAVTGSRT--YSFEGHGAPVYSLCPHAKENIHFIFSISVDG----KIKAWLYDSL----GARVDYDAPGLGC 533 (1093)
Q Consensus 465 -d~~i~vwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg----~i~vwd~~~~----~~~~~~~~~~~~v 533 (1093)
...|+.|.+.++..- ..+.........+....+.|+++++..+..+ .+.+.++... .....+......+
T Consensus 200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~ 279 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGV 279 (414)
T ss_dssp CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-
T ss_pred CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCce
Confidence 234888888877543 4444444443222333356777776544332 3667777664 2223333223233
Q ss_pred -EEEEEccCCCEEEEEecCCCCceeEEEEeCCCCee---eeeeecccccCCCeEEEEEcCCCCEEEE-EeCCC--cEEEE
Q 001352 534 -TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDH--VIKIW 606 (1093)
Q Consensus 534 -~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~~~v~~v~~~~~~~~l~~-~~~dg--~i~iw 606 (1093)
..+... +..++..+..+...+.|...++..... ...+..+. ....+..+.. .+++|+. ...++ .|+++
T Consensus 280 ~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~-~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~ 354 (414)
T PF02897_consen 280 EYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPED-EDVSLEDVSL--FKDYLVLSYRENGSSRLRVY 354 (414)
T ss_dssp EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--S-SSEEEEEEEE--ETTEEEEEEEETTEEEEEEE
T ss_pred EEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCC-CceeEEEEEE--ECCEEEEEEEECCccEEEEE
Confidence 333333 443333333444467788888887653 22333333 0113444443 4555655 33343 57889
Q ss_pred ECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEEC----CCeEEEEEcCCCce
Q 001352 607 DMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESNS 657 (1093)
Q Consensus 607 d~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iw~~~~~~~ 657 (1093)
++..+.....+..... ..+..+...+++..+..... -+++..||+.+++.
T Consensus 355 ~~~~~~~~~~~~~p~~-g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 355 DLDDGKESREIPLPEA-GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp ETT-TEEEEEEESSSS-SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred ECCCCcEEeeecCCcc-eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 9984555555544322 22344444455554443322 36677788877643
No 361
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.71 E-value=0.0042 Score=69.35 Aligned_cols=173 Identities=16% Similarity=0.189 Sum_probs=111.1
Q ss_pred eEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEe---CC-CeEEEEEcCCcceee--ecccccCCeEEEEEeCC
Q 001352 825 VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM---DD-STILIYNARSSEVIS--KLEGHSKRVTGLVFSDA 898 (1093)
Q Consensus 825 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~---~d-g~i~iwd~~~~~~~~--~l~~h~~~V~~l~~s~d 898 (1093)
.+.+-|.. +...+.+......+..-+|+| +++.++..+ .. ..+.++++.+++... .+.++. ...+||||
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~---~~P~fspD 248 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN---GAPAFSPD 248 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc---CCccCCCC
Confidence 34555544 556666665666778889999 676655442 22 369999999886543 344443 45789999
Q ss_pred CCEEEEE-eCCCc--EEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeC--C--eEEEEEcCCccee
Q 001352 899 LNILVSS-GGDAQ--IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE--T--HLAIYEAEELTCL 971 (1093)
Q Consensus 899 g~~l~s~-s~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d--~--~i~vwd~~~~~~~ 971 (1093)
|+.|+.+ ..||. |.+.|+.++.... +....+. -+.-.|+|||+.++-.+| | .|.+++.+.+...
T Consensus 249 G~~l~f~~~rdg~~~iy~~dl~~~~~~~---Lt~~~gi------~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ 319 (425)
T COG0823 249 GSKLAFSSSRDGSPDIYLMDLDGKNLPR---LTNGFGI------NTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT 319 (425)
T ss_pred CCEEEEEECCCCCccEEEEcCCCCccee---cccCCcc------ccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee
Confidence 9887755 45665 5556666644111 2222222 236689999999998544 3 5888888877765
Q ss_pred eeeecCCCCCEEEEEEccCCCEEEEEeCC-Cc--EEEEEcCCCce
Q 001352 972 KQWFPISSVPISQATFSCDCRMVFTSFVD-GT--LSIHEASNLEV 1013 (1093)
Q Consensus 972 ~~~~~~h~~~v~~~~fs~dg~~l~t~~~d-g~--v~vwd~~~~~~ 1013 (1093)
+....+. .-..-.+||||++|+..+.. |. |.+.|+.++..
T Consensus 320 riT~~~~--~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~ 362 (425)
T COG0823 320 RLTFSGG--GNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK 362 (425)
T ss_pred EeeccCC--CCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc
Confidence 4433322 22267899999999977743 43 77777777764
No 362
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.68 E-value=0.0026 Score=74.12 Aligned_cols=185 Identities=9% Similarity=0.064 Sum_probs=106.3
Q ss_pred CCeeEEEEccCCCEEEEEe-------CC--eEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCC--------
Q 001352 804 EAVPCFALSKNDAYLFSAS-------GG--VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD-------- 866 (1093)
Q Consensus 804 ~~v~~l~~s~dg~~la~~~-------dg--~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d-------- 866 (1093)
..+...++||||+.+|... +. .|.+++.. +.. ..+.. ....+.-.|+| |++.|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSL-DADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECC-CCCceEEEecCcceEEEec
Confidence 3567899999999988765 33 35555542 222 33332 22488899999 77777666432
Q ss_pred ----CeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEE---EeCCCCceeeeeeeecCCCcccCCCC
Q 001352 867 ----STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFV---WDVDGWGIQTCRSLQTPDGVMTLAPS 939 (1093)
Q Consensus 867 ----g~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~i---wd~~~~~~~~~~~~~~~~~~~~~~~~ 939 (1093)
+.+.+.++..++... ...+.|..+.|||||..+|... ++.|.+ -....++...........+.. ..
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~---~~ 498 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG---DT 498 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC---Cc
Confidence 234444554443322 2346799999999999998776 467777 444454422211222222111 23
Q ss_pred ceEEEEccCCCEEEEEeCCeEEEEEcCC-cceeeeeecC--CCCCEEEEEEccCCCEEEEEeCCCc
Q 001352 940 ETHIQFHKDQTRFLLVHETHLAIYEAEE-LTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGT 1002 (1093)
Q Consensus 940 v~~~~~s~dg~~l~~~~d~~i~vwd~~~-~~~~~~~~~~--h~~~v~~~~fs~dg~~l~t~~~dg~ 1002 (1093)
+.++.|..++.+++...++...+|.+.- |.... ...+ ...++.+++-+++ .|+....+|.
T Consensus 499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~-~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~ 561 (591)
T PRK13616 499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSD-ALPSRNLSAPVVAVAASPS--TVYVTDARAV 561 (591)
T ss_pred cccceEecCCEEEEEecCCCCceEEEecCCcccc-ccCCCCccCceEEEecCCc--eEEEEcCCce
Confidence 5789999999976554444344454432 22222 1222 2567778887763 3444555663
No 363
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.68 E-value=0.043 Score=61.65 Aligned_cols=232 Identities=13% Similarity=0.092 Sum_probs=111.6
Q ss_pred CCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcc---cceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE-C
Q 001352 398 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA---RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD-A 473 (1093)
Q Consensus 398 ~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~---~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd-~ 473 (1093)
+.|.++.|+.+. .|++...||.+++||+...... .......-....+....+..+|- .++++ ++.+.+-+ .
T Consensus 81 ~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~Gi--vvLt~--~~~~~~v~n~ 155 (410)
T PF04841_consen 81 GRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGI--VVLTG--NNRFYVVNNI 155 (410)
T ss_pred CCEEEEEECCCC-eEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCE--EEECC--CCeEEEEeCc
Confidence 899999999865 4556679999999998743200 00001111122233334444553 34433 33344433 2
Q ss_pred CCCceeEEe---ecCCC-----CeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEE
Q 001352 474 VTGSRTYSF---EGHGA-----PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL 545 (1093)
Q Consensus 474 ~~~~~~~~~---~~h~~-----~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 545 (1093)
......+.+ .+... ...........+....+....++.+.+.+-..... ....+++..+++||+|+++
T Consensus 156 ~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~----i~~~~~i~~iavSpng~~i 231 (410)
T PF04841_consen 156 DEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ----IDSDGPIIKIAVSPNGKFI 231 (410)
T ss_pred cccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc----ccCCCCeEEEEECCCCCEE
Confidence 211111111 11000 00000001122333444555555555443222111 1124589999999999999
Q ss_pred EEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCC
Q 001352 546 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE 625 (1093)
Q Consensus 546 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 625 (1093)
+.... ++.+.+.+..-.+....+.... ......+.|+.+...++.- ...+.+....
T Consensus 232 Al~t~----~g~l~v~ssDf~~~~~e~~~~~--~~~p~~~~WCG~dav~l~~--~~~l~lvg~~---------------- 287 (410)
T PF04841_consen 232 ALFTD----SGNLWVVSSDFSEKLCEFDTDS--KSPPKQMAWCGNDAVVLSW--EDELLLVGPD---------------- 287 (410)
T ss_pred EEEEC----CCCEEEEECcccceeEEeecCc--CCCCcEEEEECCCcEEEEe--CCEEEEECCC----------------
Confidence 98875 4557777765555555544432 2445566666543222221 2223333211
Q ss_pred CceEEEecCCCEEEEEECCCeEEEEEcCCCceeeeccc
Q 001352 626 NPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV 663 (1093)
Q Consensus 626 v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 663 (1093)
-..+.|.-++..++..-.|| ++|........++....
T Consensus 288 ~~~~~~~~~~~~~l~~E~DG-~riit~~~~~~l~~Vp~ 324 (410)
T PF04841_consen 288 GDSISFWYDGPVILVSEIDG-VRIITSTSHEFLQRVPD 324 (410)
T ss_pred CCceEEeccCceEEeccCCc-eEEEeCCceEEEEECCH
Confidence 12244444455444444455 77776665555555543
No 364
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.65 E-value=0.089 Score=61.24 Aligned_cols=197 Identities=15% Similarity=0.074 Sum_probs=116.4
Q ss_pred CCEEEEEEcCCEEEEEEccCCCcccceEEeccccc--cE-------EEEEeeCCCCcEEEEEEcCCCcEEEEECCCCcee
Q 001352 409 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVG--NV-------NDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 479 (1093)
Q Consensus 409 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~--~v-------~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~ 479 (1093)
+..|.+++.++.|.-.|..+|+.+-... ...... .+ ..+++. +. .++.++.|+.+.-.|.++|+.+
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~-~~~~~~~~~~~~~~~~~rg~av~--~~--~v~v~t~dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYD-PKLPDDVIPVMCCDVVNRGVALY--DG--KVFFGTLDARLVALDAKTGKVV 143 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEec-CCCCcccccccccccccccceEE--CC--EEEEEcCCCEEEEEECCCCCEE
Confidence 4466666777788888888887554221 111100 10 012222 23 4667788999999999999998
Q ss_pred EEeecC--C--CCeEEe-eecccCCccEEEEEe------cCCeEEEEEcCCCCceEEecCCCC-----------------
Q 001352 480 YSFEGH--G--APVYSL-CPHAKENIHFIFSIS------VDGKIKAWLYDSLGARVDYDAPGL----------------- 531 (1093)
Q Consensus 480 ~~~~~h--~--~~v~~~-~~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~----------------- 531 (1093)
...... . ..+.+- .+ . ++ .++.+. .+|.|..+|.++++.+..+.....
T Consensus 144 W~~~~~~~~~~~~~tssP~v--~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~ 219 (527)
T TIGR03075 144 WSKKNGDYKAGYTITAAPLV--V-KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPG 219 (527)
T ss_pred eecccccccccccccCCcEE--E-CC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccc
Confidence 765421 1 111110 11 1 23 444443 268899999988887765433211
Q ss_pred --------------ce-EEEEEccCCCEEEEEecC-----C---CCc----eeEEEEeCCCCeeeeeeeccc--ccC---
Q 001352 532 --------------GC-TRMAYSANGRRLFSCGTS-----K---EGE----SFLVEWNESEGAIKRTYQGLQ--LQH--- 579 (1093)
Q Consensus 532 --------------~v-~~~~~s~d~~~l~~~~~~-----~---~~~----~~i~iwd~~~~~~~~~~~~~~--~~~--- 579 (1093)
.+ ..+++.|...+++.+..+ + .++ ..|.-.|++||+..-.++... ..+
T Consensus 220 ~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~ 299 (527)
T TIGR03075 220 AKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDG 299 (527)
T ss_pred cCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccC
Confidence 11 235677777777766532 1 112 368888999999887776533 111
Q ss_pred -CCeEEEEEcCCCC---EEEEEeCCCcEEEEECCCCceE
Q 001352 580 -NSVSVVHFDTAKD---QILAAGDDHVIKIWDMNKVQLL 614 (1093)
Q Consensus 580 -~~v~~v~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~ 614 (1093)
....-+.+..+|+ .++.+..+|.+++.|..+|+.+
T Consensus 300 ~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 300 VNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred CCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 1122233334665 6678999999999999999986
No 365
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=0.16 Score=56.77 Aligned_cols=251 Identities=13% Similarity=0.118 Sum_probs=162.2
Q ss_pred CeEEEEECCCCCEEEEEEcCC-EEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCc
Q 001352 399 SVNRVVWSPDGSLLGVAYSKH-IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 477 (1093)
Q Consensus 399 ~V~~v~~s~dg~~las~~~d~-~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~ 477 (1093)
....++..+++..+....... .+..-+.... .... ....-...-..++.++++.+ .+++...++.|.+.|..+.+
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n-~~~~--~~~~g~~~p~~i~v~~~~~~-vyv~~~~~~~v~vid~~~~~ 107 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSN-TVTQ--SLSVGGVYPAGVAVNPAGNK-VYVTTGDSNTVSVIDTATNT 107 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccc-eeee--eccCCCccccceeeCCCCCe-EEEecCCCCeEEEEcCcccc
Confidence 566688888886655543222 3444444421 1111 11111133456788888886 45666667899999988888
Q ss_pred eeEEeecCCCCeEEeeecccCCccEEEEEec---CCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCC
Q 001352 478 RTYSFEGHGAPVYSLCPHAKENIHFIFSISV---DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 554 (1093)
Q Consensus 478 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~ 554 (1093)
..+....-. ....+++.+ ++..+..+.. ++++.+.|-.+............+ ..++++|+|..++.+.. .
T Consensus 108 ~~~~~~vG~-~P~~~~~~~--~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~---~ 180 (381)
T COG3391 108 VLGSIPVGL-GPVGLAVDP--DGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNS---D 180 (381)
T ss_pred eeeEeeecc-CCceEEECC--CCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEec---C
Confidence 877664333 445566644 5555555544 688888888877777664433334 88999999998888762 3
Q ss_pred ceeEEEEeCCCCeeeeeeecc--cccCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceEEEEecCCCCCCCceE
Q 001352 555 ESFLVEWNESEGAIKRTYQGL--QLQHNSVSVVHFDTAKDQILAAGDD---HVIKIWDMNKVQLLTTIDAGGGLPENPRI 629 (1093)
Q Consensus 555 ~~~i~iwd~~~~~~~~~~~~~--~~~~~~v~~v~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~v 629 (1093)
++.|.+.|..+....+ -... .........+.++|+++++++.-.. +.+.+.|..++............ ....+
T Consensus 181 ~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v 258 (381)
T COG3391 181 DNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGV 258 (381)
T ss_pred CCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCce
Confidence 6779999977766553 1100 1112345678999999977775433 69999999998887762222222 35678
Q ss_pred EEecCCCEEEEEECC-CeEEEEEcCCCceeeecc
Q 001352 630 CFNKNGTLLAVIANE-NRIKILETPESNSVDAAG 662 (1093)
Q Consensus 630 ~~s~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~ 662 (1093)
..+|+|..+.+.... +.+.+.|..+........
T Consensus 259 ~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 259 AVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred eECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 999999999888554 888888888765555433
No 366
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.60 E-value=0.007 Score=67.81 Aligned_cols=220 Identities=14% Similarity=0.145 Sum_probs=115.6
Q ss_pred eEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCE
Q 001352 738 ISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY 817 (1093)
Q Consensus 738 i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~ 817 (1093)
...+.++|+|+.+++ ..+|...++...... . ...+.-..++|.+++++
T Consensus 35 p~~ls~npngr~v~V-~g~geY~iyt~~~~r-------------------------~------k~~G~g~~~vw~~~n~y 82 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLV-CGDGEYEIYTALAWR-------------------------N------KAFGSGLSFVWSSRNRY 82 (443)
T ss_dssp -SEEEE-TTSSEEEE-EETTEEEEEETTTTE-------------------------E------EEEEE-SEEEE-TSSEE
T ss_pred CeeEEECCCCCEEEE-EcCCEEEEEEccCCc-------------------------c------cccCceeEEEEecCccE
Confidence 567899999997777 666777776511100 0 02233456789987765
Q ss_pred EEEEeCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeC
Q 001352 818 LFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 897 (1093)
Q Consensus 818 la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~ 897 (1093)
.+.-..++|.|+.--+.+....+... ..+..+-. |.+|+..+.+ .|.+||..+++.+.++... +|..+.||+
T Consensus 83 Av~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~----G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~ 154 (443)
T PF04053_consen 83 AVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG----GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSD 154 (443)
T ss_dssp EEE-TTS-EEEEETTEE-TT-----S-S-EEEEE-----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-T
T ss_pred EEEECCCeEEEEEcCccccceEEcCC-cccceEEc----CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEEC
Confidence 55445788999743333333344322 12333332 6677766654 8999999999999998743 389999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCC---------ceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCc
Q 001352 898 ALNILVSSGGDAQIFVWDVDGW---------GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL 968 (1093)
Q Consensus 898 dg~~l~s~s~dg~i~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~ 968 (1093)
+|.+++..+.+. +.|++.+.. .......+.... ..|.+.+|..| -++. +..+.++- +-.|
T Consensus 155 ~g~~val~t~~~-i~il~~~~~~~~~~~~~g~e~~f~~~~E~~------~~IkSg~W~~d-~fiY-tT~~~lkY--l~~G 223 (443)
T PF04053_consen 155 DGELVALVTKDS-IYILKYNLEAVAAIPEEGVEDAFELIHEIS------ERIKSGCWVED-CFIY-TTSNHLKY--LVNG 223 (443)
T ss_dssp TSSEEEEE-S-S-EEEEEE-HHHHHHBTTTB-GGGEEEEEEE-------S--SEEEEETT-EEEE-E-TTEEEE--EETT
T ss_pred CCCEEEEEeCCe-EEEEEecchhcccccccCchhceEEEEEec------ceeEEEEEEcC-EEEE-EcCCeEEE--EEcC
Confidence 999999988775 888776543 000111221111 25788888877 3333 33336665 3333
Q ss_pred ce--eeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 001352 969 TC--LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1012 (1093)
Q Consensus 969 ~~--~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~ 1012 (1093)
+. +..+ ..++.=+.+.+....+.....|+.|..+.++...
T Consensus 224 e~~~i~~l----d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~~ 265 (443)
T PF04053_consen 224 ETGIIAHL----DKPLYLLGYLPKENRLYLIDRDGNVISYELDLSE 265 (443)
T ss_dssp EEEEEEE-----SS--EEEEEETTTTEEEEE-TT--EEEEE--HHH
T ss_pred CcceEEEc----CCceEEEEEEccCCEEEEEECCCCEEEEEECHHH
Confidence 32 2221 4466777788877788888888888888776543
No 367
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.53 E-value=0.026 Score=56.19 Aligned_cols=232 Identities=16% Similarity=0.088 Sum_probs=135.0
Q ss_pred EEEEccCCC-EEEEEe-CCe-EEEEEccCceeEEEECCCCCC--eEEEEEcCCCCCEEEEEeCC-----CeEEEEEcCCc
Q 001352 808 CFALSKNDA-YLFSAS-GGV-ISLYIVMTFKTILTIMPPSPT--ATSLAFNPHDNNVIAIGMDD-----STILIYNARSS 877 (1093)
Q Consensus 808 ~l~~s~dg~-~la~~~-dg~-i~iwd~~~~~~~~~~~~~~~~--i~~l~~s~~d~~~lasg~~d-----g~i~iwd~~~~ 877 (1093)
.++|+|.-. -++.+- -|+ ..++|..+.+.+..+....+. --.=.||| ||++|+..-.| |.|-|||...+
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEecccc
Confidence 577777643 444454 355 678898888777665433321 22346999 89999865443 68999999854
Q ss_pred -ceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEE--------------------EEeCCCCceeeeeeeecCCCcccC
Q 001352 878 -EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIF--------------------VWDVDGWGIQTCRSLQTPDGVMTL 936 (1093)
Q Consensus 878 -~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~--------------------iwd~~~~~~~~~~~~~~~~~~~~~ 936 (1093)
+.+..+..|.-....+.+.+||+.|+.+. |-|. +.|..+++......+.....+
T Consensus 151 fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~--- 225 (366)
T COG3490 151 FQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ--- 225 (366)
T ss_pred cceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh---
Confidence 45677888887788899999999998763 2233 333333322221111111111
Q ss_pred CCCceEEEEccCCCEEEEE-eCC-----eEEEEEcCCcceeeeeecC------CCCCEEEEEEccCCCEEE-EEeCCCcE
Q 001352 937 APSETHIQFHKDQTRFLLV-HET-----HLAIYEAEELTCLKQWFPI------SSVPISQATFSCDCRMVF-TSFVDGTL 1003 (1093)
Q Consensus 937 ~~~v~~~~~s~dg~~l~~~-~d~-----~i~vwd~~~~~~~~~~~~~------h~~~v~~~~fs~dg~~l~-t~~~dg~v 1003 (1093)
..+..++.-+||+.++.+ ..| --.|=-...|+.+.-+... -...|-+++..-+..+++ |+-..+..
T Consensus 226 -lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~ 304 (366)
T COG3490 226 -LSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRA 304 (366)
T ss_pred -cceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeE
Confidence 258888899999887763 111 1111111122222211100 134566777776555555 44445567
Q ss_pred EEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEec
Q 001352 1004 SIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1061 (1093)
Q Consensus 1004 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~ 1061 (1093)
.+||..+|..+.... ++.. ..| +.. ..-|++.+.+|.+.++.-
T Consensus 305 vi~da~tG~vv~~a~----l~da---aGv-----a~~---~~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 305 VIWDAATGAVVSEAA----LPDA---AGV-----AAA---KGGFAVSSGQGRIIFYSR 347 (366)
T ss_pred EEEEcCCCcEEeccc----cccc---ccc-----eec---cCceEEecCCceEEeccc
Confidence 889999999884443 2221 111 111 345788888999988743
No 368
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.49 E-value=0.0015 Score=72.96 Aligned_cols=138 Identities=17% Similarity=0.094 Sum_probs=99.7
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCC
Q 001352 396 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 475 (1093)
Q Consensus 396 h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~ 475 (1093)
|...|.--+++..+++++.|+..|.+++|+-.+++.... ...+-.+.+..+..+++.. ++|.|+..|.|.++-+..
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~--~~~~~~~~~~~~~vs~~e~--lvAagt~~g~V~v~ql~~ 107 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL--KNEGATGITCVRSVSSVEY--LVAAGTASGRVSVFQLNK 107 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcc--cccCccceEEEEEecchhH--hhhhhcCCceEEeehhhc
Confidence 455677777888999999999999999999998875442 2334555667778888877 788899999999998776
Q ss_pred Ccee---E--Ee-ecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCC----ceEEecCCCCceEEEEEc
Q 001352 476 GSRT---Y--SF-EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG----ARVDYDAPGLGCTRMAYS 539 (1093)
Q Consensus 476 ~~~~---~--~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~s 539 (1093)
+..- . .+ +.|...|++++| +.|+..+++|...|.|..-.++... ....+......|..+.+.
T Consensus 108 ~~p~~~~~~t~~d~~~~~rVTal~W--s~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 108 ELPRDLDYVTPCDKSHKCRVTALEW--SKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred cCCCcceeeccccccCCceEEEEEe--cccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 4321 1 11 237888999999 5688999999999999998887721 112333344456555543
No 369
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.47 E-value=0.031 Score=59.34 Aligned_cols=224 Identities=15% Similarity=0.092 Sum_probs=137.8
Q ss_pred eeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcCC
Q 001352 340 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH 419 (1093)
Q Consensus 340 ~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d~ 419 (1093)
+-.|.|++..|+.+--..+.|.-|+..+|+.... .+.+.+.++..-.++..|+++. .+
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~---------------------~~p~~~~~~~~~d~~g~Lv~~~-~g 86 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRVF---------------------PSPGGFSSGALIDAGGRLIACE-HG 86 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceEEE---------------------ECCCCcccceeecCCCeEEEEc-cc
Confidence 4467888887788877789999999987754321 1334445555555555666553 33
Q ss_pred EEEEEEccCCCcccceEEec-c-ccccEEEEEeeCCCCcEEEEEEcCC----------CcEEEEECC-CCceeEEeecCC
Q 001352 420 IVQLYAYHGGSDARQQLEID-A-HVGNVNDLAFSAPCKQISVITCGDD----------KTIKVWDAV-TGSRTYSFEGHG 486 (1093)
Q Consensus 420 ~i~iwd~~~~~~~~~~~~~~-~-h~~~v~~~~~s~d~~~l~l~s~~~d----------~~i~vwd~~-~~~~~~~~~~h~ 486 (1093)
+.+++.+++.......... + -..+-+.+...|+|. +.+ +... ..-.||-+. .+..++.+..+-
T Consensus 87 -~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~--~wf-gt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~ 162 (307)
T COG3386 87 -VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR--IWF-GDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDL 162 (307)
T ss_pred -cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC--EEE-eCCCccccCccccCCcceEEEEcCCCCEEEeecCcE
Confidence 7788876665422222211 2 124567888999998 333 3322 112344444 566666666666
Q ss_pred CCeEEeeecccCCccEEEEE-ecCCeEEEEEcCC-----CCc--eEEecCCCCceEEEEEccCCCEEEEEecCCCCceeE
Q 001352 487 APVYSLCPHAKENIHFIFSI-SVDGKIKAWLYDS-----LGA--RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 558 (1093)
Q Consensus 487 ~~v~~~~~~~~~~~~~l~s~-~~dg~i~vwd~~~-----~~~--~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i 558 (1093)
..-+.++|+| |++.++.+ +..+.|..|++.. ... ........+..-.++...+|.+-+++... .+.|
T Consensus 163 ~~~NGla~Sp--Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~---g~~v 237 (307)
T COG3386 163 TIPNGLAFSP--DGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG---GGRV 237 (307)
T ss_pred EecCceEECC--CCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC---CceE
Confidence 6678889965 55455554 5558888887763 111 12233344556678888889887644321 2369
Q ss_pred EEEeCCCCeeeeeeecccccCCCeEEEEEc-CCCCEEEEEe
Q 001352 559 VEWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAG 598 (1093)
Q Consensus 559 ~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~~l~~~~ 598 (1093)
..|+.. |+++..+.... ..+.+++|. |+.+.|++.+
T Consensus 238 ~~~~pd-G~l~~~i~lP~---~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 238 VRFNPD-GKLLGEIKLPV---KRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EEECCC-CcEEEEEECCC---CCCccceEeCCCcCEEEEEe
Confidence 999988 99988888775 466666664 4556665544
No 370
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.46 E-value=0.11 Score=55.56 Aligned_cols=229 Identities=14% Similarity=0.069 Sum_probs=129.5
Q ss_pred CCceEEEEEccCCcEEEEecC-CCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcCCEEEEE
Q 001352 346 VQHTLLLVGTNVGDTGLWDVN-SGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLY 424 (1093)
Q Consensus 346 dg~~llasg~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d~~i~iw 424 (1093)
.++ .|+.|+.+| +.+++.. ....... .+...|..+...|+-+.|++-+ |+.+.++
T Consensus 6 ~~~-~L~vGt~~G-l~~~~~~~~~~~~~i---------------------~~~~~I~ql~vl~~~~~llvLs-d~~l~~~ 61 (275)
T PF00780_consen 6 WGD-RLLVGTEDG-LYVYDLSDPSKPTRI---------------------LKLSSITQLSVLPELNLLLVLS-DGQLYVY 61 (275)
T ss_pred CCC-EEEEEECCC-EEEEEecCCccceeE---------------------eecceEEEEEEecccCEEEEEc-CCccEEE
Confidence 344 478888888 9999983 2222211 1333499999999888877765 4899999
Q ss_pred EccCCCcccceE-----------EeccccccEEEEE--eeCCCCcEEEEEEcCCCcEEEEECCCC-----ceeEEeecCC
Q 001352 425 AYHGGSDARQQL-----------EIDAHVGNVNDLA--FSAPCKQISVITCGDDKTIKVWDAVTG-----SRTYSFEGHG 486 (1093)
Q Consensus 425 d~~~~~~~~~~~-----------~~~~h~~~v~~~~--~s~d~~~l~l~s~~~d~~i~vwd~~~~-----~~~~~~~~h~ 486 (1093)
++..-....... ........+...+ -...+.. .|+.+ ..++|.+|.+... +..+++. -.
T Consensus 62 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~-~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~-lp 138 (275)
T PF00780_consen 62 DLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSR-RLCVA-VKKKILIYEWNDPRNSFSKLLKEIS-LP 138 (275)
T ss_pred EchhhccccccccccccccccccccccccCCeeEEeeccccccce-EEEEE-ECCEEEEEEEECCcccccceeEEEE-cC
Confidence 987644332110 0011223444444 1123332 34444 4558888877653 3455554 45
Q ss_pred CCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC-----------ceEEEEEccCCCEEEEEecCCCCc
Q 001352 487 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL-----------GCTRMAYSANGRRLFSCGTSKEGE 555 (1093)
Q Consensus 487 ~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-----------~v~~~~~s~d~~~l~~~~~~~~~~ 555 (1093)
..+.+++|. +..++.|..+ ...+.|+.++.....+..... ....+.--+++.+|++..
T Consensus 139 ~~~~~i~~~----~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~~------ 207 (275)
T PF00780_consen 139 DPPSSIAFL----GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCYD------ 207 (275)
T ss_pred CCcEEEEEe----CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEec------
Confidence 778888885 2356666644 477788886555443322111 112222234456665532
Q ss_pred eeEEEEeCCCCeeee--eeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecC
Q 001352 556 SFLVEWNESEGAIKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 620 (1093)
Q Consensus 556 ~~i~iwd~~~~~~~~--~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 620 (1093)
. +-++=-..|+..+ .+.- ...+.++++. ..++++.+. +.|.||++.++++++.+...
T Consensus 208 ~-~g~fv~~~G~~~r~~~i~W----~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 208 N-IGVFVNKNGEPSRKSTIQW----SSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred c-eEEEEcCCCCcCcccEEEc----CCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence 1 3333233454443 1111 1345556663 357777666 45999999999999998754
No 371
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.43 E-value=0.11 Score=55.38 Aligned_cols=231 Identities=11% Similarity=0.125 Sum_probs=131.6
Q ss_pred CCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEe----
Q 001352 407 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF---- 482 (1093)
Q Consensus 407 ~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~---- 482 (1093)
..++.|+.|+.+| +.+++......... + .+...|..+...++-+ .++.-+ |+.+.++++..-.....-
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~---i-~~~~~I~ql~vl~~~~--~llvLs-d~~l~~~~L~~l~~~~~~~~~~ 76 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTR---I-LKLSSITQLSVLPELN--LLLVLS-DGQLYVYDLDSLEPVSTSAPLA 76 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcccee---E-eecceEEEEEEecccC--EEEEEc-CCccEEEEchhhcccccccccc
Confidence 3588999999999 99999933222221 1 2333499999999887 444444 599999998754433311
Q ss_pred ----------ecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCC-----CceEEecCCCCceEEEEEccCCCEEEE
Q 001352 483 ----------EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-----GARVDYDAPGLGCTRMAYSANGRRLFS 547 (1093)
Q Consensus 483 ----------~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-----~~~~~~~~~~~~v~~~~~s~d~~~l~~ 547 (1093)
......+...+......+...+.......|.+|.+... .....+..+ ..+..++|. ++.++.
T Consensus 77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-~~~~~i~~~--~~~i~v 153 (275)
T PF00780_consen 77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-DPPSSIAFL--GNKICV 153 (275)
T ss_pred ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-CCcEEEEEe--CCEEEE
Confidence 01223344444112233344555555669999888763 223333333 567888888 556666
Q ss_pred EecCCCCceeEEEEeCCCCeeeeeeecccc---------cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE--E
Q 001352 548 CGTSKEGESFLVEWNESEGAIKRTYQGLQL---------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--T 616 (1093)
Q Consensus 548 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---------~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~ 616 (1093)
+.. ....+.|+.++.....+..... ...++..+.. +++.++++- +..-.+.|. .|+... .
T Consensus 154 ~~~-----~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~ 224 (275)
T PF00780_consen 154 GTS-----KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKST 224 (275)
T ss_pred EeC-----CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccE
Confidence 653 2378889887766544422110 0123333333 345566553 222233343 444333 2
Q ss_pred EecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeeccc
Q 001352 617 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV 663 (1093)
Q Consensus 617 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 663 (1093)
+.-.. ....+++. ..++++.+. +.|.||++.+++.++.+..
T Consensus 225 i~W~~---~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 225 IQWSS---APQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPL 265 (275)
T ss_pred EEcCC---chhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEEC
Confidence 32221 24556664 447766665 5699999999988887764
No 372
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.37 E-value=7.3e-05 Score=81.62 Aligned_cols=184 Identities=14% Similarity=0.141 Sum_probs=119.9
Q ss_pred CCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCce--EEecCCCCceEEEEEcc-CCCEEEEEecCCCCceeEEEEeC
Q 001352 487 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR--VDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNE 563 (1093)
Q Consensus 487 ~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~--~~~~~~~~~v~~~~~s~-d~~~l~~~~~~~~~~~~i~iwd~ 563 (1093)
..+.++++....+...++.|..+|.|.+-.++..... .....+...+++++|++ |.+.||++-.....+..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 3455555554555567888999999999877654433 34455666899999988 56777777554456778999999
Q ss_pred CCC--eeee--eeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceEEEEecCCCCCCCceEEEec-CCCE
Q 001352 564 SEG--AIKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNK-NGTL 637 (1093)
Q Consensus 564 ~~~--~~~~--~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~-~~~~ 637 (1093)
.++ .+.. .+.+. ......+++|..+.+.+++|.....+.++|++. ......+. +..+..+..+| .+.+
T Consensus 137 ~s~ltvPke~~~fs~~--~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn----Tk~vqG~tVdp~~~nY 210 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSS--TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN----TKYVQGITVDPFSPNY 210 (783)
T ss_pred ccccCCCccccccccc--cccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh----hhhcccceecCCCCCc
Confidence 887 2221 12221 124556888888888899999999999999872 22222221 12356778888 7777
Q ss_pred EEEEECCCeEEEEEcC-C-Cceeeecccc----cccceeeeecCCC
Q 001352 638 LAVIANENRIKILETP-E-SNSVDAAGVL----SDNLRKLSVNPIS 677 (1093)
Q Consensus 638 l~~~~~dg~i~iw~~~-~-~~~~~~~~~~----~~~i~~~~~~~~~ 677 (1093)
+++-. ||.|.+||.. . ..++..+... ...+..++++|..
T Consensus 211 ~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr 255 (783)
T KOG1008|consen 211 FCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR 255 (783)
T ss_pred eeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC
Confidence 77665 8999999942 2 1222222222 2247788888754
No 373
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.33 E-value=0.71 Score=55.84 Aligned_cols=206 Identities=13% Similarity=0.141 Sum_probs=119.2
Q ss_pred EEEEEcCCCcEEEEECCCCceeEEeecCCCC--------eEEeeecc--------------cCCccEEEEEecCCeEEEE
Q 001352 458 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAP--------VYSLCPHA--------------KENIHFIFSISVDGKIKAW 515 (1093)
Q Consensus 458 ~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~--------v~~~~~~~--------------~~~~~~l~s~~~dg~i~vw 515 (1093)
.++.++.++.|.-.|..+|+.+-++...... .+.+++.. ...+..++.++.|+.+.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 4666667777888888888877666432110 11222211 1233478889999999999
Q ss_pred EcCCCCceEEecCCCC------------ceEEEEEcc--CCCEEEEEecCCC------CceeEEEEeCCCCeeeeeeecc
Q 001352 516 LYDSLGARVDYDAPGL------------GCTRMAYSA--NGRRLFSCGTSKE------GESFLVEWNESEGAIKRTYQGL 575 (1093)
Q Consensus 516 d~~~~~~~~~~~~~~~------------~v~~~~~s~--d~~~l~~~~~~~~------~~~~i~iwd~~~~~~~~~~~~~ 575 (1093)
|.++++....+..... ....+.-+| .+..+++++...+ ..+.|+-+|.++|+.+-.+..-
T Consensus 276 DA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g 355 (764)
T TIGR03074 276 DADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPG 355 (764)
T ss_pred ECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecC
Confidence 9999888766533211 000111122 1334555543222 2678999999999987665421
Q ss_pred cc--------------cCCCe-EEEEEcCCCCEEEEEe------------------CCCcEEEEECCCCceEEEEecCCC
Q 001352 576 QL--------------QHNSV-SVVHFDTAKDQILAAG------------------DDHVIKIWDMNKVQLLTTIDAGGG 622 (1093)
Q Consensus 576 ~~--------------~~~~v-~~v~~~~~~~~l~~~~------------------~dg~i~iwd~~~~~~~~~~~~~~~ 622 (1093)
.. ....+ ...++.++...++.+. ..+.|.-.|.++|+..-.++...+
T Consensus 356 ~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~h 435 (764)
T TIGR03074 356 NPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHH 435 (764)
T ss_pred CCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCC
Confidence 00 00011 2345555555554422 235577788889988877654221
Q ss_pred C-------CCCceEEEec-CCC---EEEEEECCCeEEEEEcCCCceeeeccc
Q 001352 623 L-------PENPRICFNK-NGT---LLAVIANENRIKILETPESNSVDAAGV 663 (1093)
Q Consensus 623 ~-------~~v~~v~~s~-~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~ 663 (1093)
. ....-+.+.- +|+ .++.++.+|.+.++|..+++.+...+.
T Consensus 436 D~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e 487 (764)
T TIGR03074 436 DLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVEE 487 (764)
T ss_pred ccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeecee
Confidence 1 0111122332 553 788999999999999999988765543
No 374
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.31 E-value=9.3e-05 Score=80.85 Aligned_cols=204 Identities=12% Similarity=0.168 Sum_probs=127.6
Q ss_pred CCCCceeeeecCCCc-eEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC-CCCE
Q 001352 334 GSSSPMSMDFHPVQH-TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSL 411 (1093)
Q Consensus 334 h~~~V~~~~~spdg~-~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~-dg~~ 411 (1093)
.+..+.|+++.-+.+ -++++|..+|.|-+-.+....-- ...+..+|....++++|++ |...
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~ 117 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNH 117 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHH
Confidence 344788888765443 58999999999998877543211 0112556888999999998 6778
Q ss_pred EEEEE----cCCEEEEEEccCCC--cccceEEec-cccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCc-eeEEee
Q 001352 412 LGVAY----SKHIVQLYAYHGGS--DARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFE 483 (1093)
Q Consensus 412 las~~----~d~~i~iwd~~~~~--~~~~~~~~~-~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~-~~~~~~ 483 (1093)
||+|- .|..+.|||+.++- ..... .+. +-.....+++|..|.+ ++.+|.....+.++|++... ....+
T Consensus 118 LAagldkhrnds~~~Iwdi~s~ltvPke~~-~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~sv- 193 (783)
T KOG1008|consen 118 LAAGLDKHRNDSSLKIWDINSLLTVPKESP-LFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSV- 193 (783)
T ss_pred HHhhhhhhcccCCccceecccccCCCcccc-ccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhh-
Confidence 88773 35579999999872 11111 122 2344566899998877 78888888899999976321 12222
Q ss_pred cCCCCeEEeeecccCCccEEEEEecCCeEEEEE-cCCCCceEEecC-----CCCceEEEEEccCCC-EEEEEecCCCCce
Q 001352 484 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL-YDSLGARVDYDA-----PGLGCTRMAYSANGR-RLFSCGTSKEGES 556 (1093)
Q Consensus 484 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~~~~~~-----~~~~v~~~~~s~d~~-~l~~~~~~~~~~~ 556 (1093)
.+..+..+.+.|- .+.++++-. ||.|.+|| ...-+....... ....+..++|.|-.. .+++... ..+
T Consensus 194 -nTk~vqG~tVdp~-~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~R---dS~ 267 (783)
T KOG1008|consen 194 -NTKYVQGITVDPF-SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSR---DSI 267 (783)
T ss_pred -hhhhcccceecCC-CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhcc---Ccc
Confidence 2223444444442 223665555 99999999 433332221111 122588999999654 3444433 256
Q ss_pred eEEEEeCC
Q 001352 557 FLVEWNES 564 (1093)
Q Consensus 557 ~i~iwd~~ 564 (1093)
+|+++|+.
T Consensus 268 tIrlydi~ 275 (783)
T KOG1008|consen 268 TIRLYDIC 275 (783)
T ss_pred eEEEeccc
Confidence 78888875
No 375
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.0018 Score=67.55 Aligned_cols=107 Identities=15% Similarity=0.266 Sum_probs=86.2
Q ss_pred HHHHHHHHhhhhcChHHHHHHHHHhcCCCh----------hHHHHHHHhcCcCHHHHHHHhccCC-CcCCccccchhhhH
Q 001352 7 DLVFLILQFLNEEGFTESAHMLERESRFYF----------DMKFFEDMILDGKWEDVEQYLSSFT-KVDDNRYSTKIYFE 75 (1093)
Q Consensus 7 ~~~~li~q~L~~~g~~~s~~~L~~Esg~~~----------~~~~~~~~i~~G~w~~~~~~l~~~~-~~~~~~~~~~~~~~ 75 (1093)
.+..+|..++...|+.+.+..|.+|+|... ++.++-++|..||-.-|++.+..-. .+.+. ...+.|.
T Consensus 118 ~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~--~s~LE~~ 195 (394)
T KOG2817|consen 118 VLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEK--SSSLEFK 195 (394)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccc--cccHHHH
Confidence 357889999999999999999999999864 2788889999999999999987631 12221 1237899
Q ss_pred HHhhhhhhhccCCCHH--HHHHHHHhhccccCCCCHHHHHHH
Q 001352 76 IRKQNFFEALDGHDIA--KALNILKKDLKDFAPGNEELFKEL 115 (1093)
Q Consensus 76 i~~~~~lEll~~~~~~--~A~~~l~~~l~~~~~~~~~~~~~l 115 (1093)
|..+.|++++..|... +|++..|+.++|+........+.|
T Consensus 196 Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQkl 237 (394)
T KOG2817|consen 196 LHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKL 237 (394)
T ss_pred HHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHH
Confidence 9999999999988877 999999999999976554444433
No 376
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.23 E-value=0.017 Score=68.37 Aligned_cols=149 Identities=12% Similarity=0.118 Sum_probs=101.6
Q ss_pred CCCEEEEE-eCCCeEEEEEcCCcceeeecccccCC-eEEEEEeC-----CCCEEEEEeCCCcEEEEeCCCCceeeeeeee
Q 001352 856 DNNVIAIG-MDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSD-----ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQ 928 (1093)
Q Consensus 856 d~~~lasg-~~dg~i~iwd~~~~~~~~~l~~h~~~-V~~l~~s~-----dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 928 (1093)
+..+|... .....|+-.|+..|+.+..+..|... |..++-.. +...-..|-.+..+..||..-.. ..++.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~---~k~v~ 568 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG---NKLVD 568 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCC---Cceee
Confidence 44555443 34578999999999999999887654 55443221 11223445567779999987532 11222
Q ss_pred cCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 001352 929 TPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1008 (1093)
Q Consensus 929 ~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~ 1008 (1093)
............++++-+.+|.+.+.+.+|.|++||- .|..-.+.+++-+.+|..|..+.||++|++.+ +..+.++++
T Consensus 569 ~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 569 SQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred ccccccccCCCceEEEecCCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 1111112223578888888998887789999999994 45555666777789999999999999988554 678888886
Q ss_pred C
Q 001352 1009 S 1009 (1093)
Q Consensus 1009 ~ 1009 (1093)
.
T Consensus 647 ~ 647 (794)
T PF08553_consen 647 L 647 (794)
T ss_pred e
Confidence 3
No 377
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.23 E-value=0.11 Score=55.20 Aligned_cols=214 Identities=11% Similarity=0.040 Sum_probs=126.3
Q ss_pred EeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC
Q 001352 449 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA 528 (1093)
Q Consensus 449 ~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 528 (1093)
.|.++... ++.+--..+.|.-||..+|+.. .+. +.+.+.++... + ++..|+++... +.+++.+.......+..
T Consensus 31 ~w~~~~~~-L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~-d-~~g~Lv~~~~g--~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 31 VWDPDRGA-LLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALI-D-AGGRLIACEHG--VRLLDPDTGGKITLLAE 103 (307)
T ss_pred cCcCCCCE-EEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceee-c-CCCeEEEEccc--cEEEeccCCceeEEecc
Confidence 46666664 4555556778888988766432 222 22223333321 2 22344444332 34455554444222211
Q ss_pred -----CCCceEEEEEccCCCEEEEEec-----CC--CCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEE
Q 001352 529 -----PGLGCTRMAYSANGRRLFSCGT-----SK--EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA 596 (1093)
Q Consensus 529 -----~~~~v~~~~~s~d~~~l~~~~~-----~~--~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~ 596 (1093)
.....+...+.|+|.+.+.... .. ...+.|+.+|. .+..++.+..+- ..-+.++||||++.++.
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~---~~~NGla~SpDg~tly~ 179 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDL---TIPNGLAFSPDGKTLYV 179 (307)
T ss_pred ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcE---EecCceEECCCCCEEEE
Confidence 1234567888999988776543 11 22345666665 466666665543 45678999999988777
Q ss_pred Ee-CCCcEEEEECCC--Cce---EEEEecCCCCCCCceEEEecCCCEEEEEECCC-eEEEEEcCCCceeeecccccccce
Q 001352 597 AG-DDHVIKIWDMNK--VQL---LTTIDAGGGLPENPRICFNKNGTLLAVIANEN-RIKILETPESNSVDAAGVLSDNLR 669 (1093)
Q Consensus 597 ~~-~dg~i~iwd~~~--~~~---~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~i~ 669 (1093)
+. ..+.|.-|++.. +.. .............-.++...+|.+.+++..+| .|.+|+.. ++.+.....+...++
T Consensus 180 aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t 258 (307)
T COG3386 180 ADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPT 258 (307)
T ss_pred EeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCc
Confidence 65 457788887752 211 11121111223345788889998886555554 89999998 888888888777777
Q ss_pred eeeec
Q 001352 670 KLSVN 674 (1093)
Q Consensus 670 ~~~~~ 674 (1093)
+++|.
T Consensus 259 ~~~Fg 263 (307)
T COG3386 259 NPAFG 263 (307)
T ss_pred cceEe
Confidence 77776
No 378
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.20 E-value=0.11 Score=56.91 Aligned_cols=178 Identities=11% Similarity=0.021 Sum_probs=105.3
Q ss_pred CcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC----CCEEEEEEc---------C-CEEEE
Q 001352 358 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD----GSLLGVAYS---------K-HIVQL 423 (1093)
Q Consensus 358 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d----g~~las~~~---------d-~~i~i 423 (1093)
..|++.|..+.+.+..+.++- ..+-..+..+.|..+ ..+|++|+. . |.|.+
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~---------------~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v 66 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEP---------------NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILV 66 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEET---------------TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEE
T ss_pred cEEEEEeCCCCeEEEEEECCC---------------CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEE
Confidence 358899998888887655431 111123334445543 578888753 2 88999
Q ss_pred EEccCC----CcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCc-eeEEee-cCCCCeEEeeeccc
Q 001352 424 YAYHGG----SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFE-GHGAPVYSLCPHAK 497 (1093)
Q Consensus 424 wd~~~~----~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~-~~~~~~-~h~~~v~~~~~~~~ 497 (1093)
+++... ..++.... ....++|++++-- .+. ++.+. .+.|.+|++...+ ....-. .....+.++...
T Consensus 67 ~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~~---lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~-- 138 (321)
T PF03178_consen 67 FEISESPENNFKLKLIHS-TEVKGPVTAICSF-NGR---LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF-- 138 (321)
T ss_dssp EEECSS-----EEEEEEE-EEESS-EEEEEEE-TTE---EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--
T ss_pred EEEEcccccceEEEEEEE-EeecCcceEhhhh-CCE---EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--
Confidence 999984 22333222 2457889998876 333 33333 4789999998888 433222 123356666542
Q ss_pred CCccEEEEEecCCeEEEEEcCCCCc-eEE--ecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001352 498 ENIHFIFSISVDGKIKAWLYDSLGA-RVD--YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 564 (1093)
Q Consensus 498 ~~~~~l~s~~~dg~i~vwd~~~~~~-~~~--~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 564 (1093)
+.+++.|.....+.++.++.... ... .......++++.|-++++.++++.. .+.+.++...
T Consensus 139 --~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~----~gnl~~l~~~ 202 (321)
T PF03178_consen 139 --KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDK----DGNLFVLRYN 202 (321)
T ss_dssp --TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEET----TSEEEEEEE-
T ss_pred --ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcC----CCeEEEEEEC
Confidence 34899999999988886665333 222 2233456888888877776666543 5557666544
No 379
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.19 E-value=0.13 Score=56.61 Aligned_cols=83 Identities=8% Similarity=0.056 Sum_probs=56.8
Q ss_pred CCCCeeEEEEccCCCEEEEEeC-CeEEEEEccCceeEEEECCCCCCeEE-EEEcCCC----------------CC-EEEE
Q 001352 802 SQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATS-LAFNPHD----------------NN-VIAI 862 (1093)
Q Consensus 802 ~~~~v~~l~~s~dg~~la~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~-l~~s~~d----------------~~-~las 862 (1093)
....+.+++.+|++++.|+.++ |.|.++|+.++..++.+++..+.-.. +...... .. +++-
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 4566889999999998888765 99999999999888877765432111 1111001 11 2334
Q ss_pred EeCCCeEEEEEcCCcceeeecc
Q 001352 863 GMDDSTILIYNARSSEVISKLE 884 (1093)
Q Consensus 863 g~~dg~i~iwd~~~~~~~~~l~ 884 (1093)
+-.-|.|.||.+++|..+..+.
T Consensus 386 aprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred eccCCeEEEEecCCCCEEEEEE
Confidence 6678899999999887766554
No 380
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.18 E-value=0.023 Score=62.13 Aligned_cols=214 Identities=11% Similarity=0.120 Sum_probs=115.6
Q ss_pred cccCCCCCCceeeccCCCCCCCCCeeEEEEccC----CCEEEEEe----------C-CeEEEEEccCc----eeEEEE--
Q 001352 782 RLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN----DAYLFSAS----------G-GVISLYIVMTF----KTILTI-- 840 (1093)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d----g~~la~~~----------d-g~i~iwd~~~~----~~~~~~-- 840 (1093)
++.|+.+...+....+...++...+..+.+..+ ..++++|. . |.|.++++... ..+..+
T Consensus 5 ~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~ 84 (321)
T PF03178_consen 5 RLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHS 84 (321)
T ss_dssp EEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEE
T ss_pred EEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEE
Confidence 334444444455555542122222333344433 57888775 1 77999999884 122211
Q ss_pred CCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcc-eeeeccc-ccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 001352 841 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-VISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 918 (1093)
Q Consensus 841 ~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~-~~~~l~~-h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~ 918 (1093)
....++|++++-- +++ |+++. .+.|.+|++...+ ....-.- ....++++... +++++.|.....+.++.++.
T Consensus 85 ~~~~g~V~ai~~~--~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~ 158 (321)
T PF03178_consen 85 TEVKGPVTAICSF--NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDE 158 (321)
T ss_dssp EEESS-EEEEEEE--TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEET
T ss_pred EeecCcceEhhhh--CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEc
Confidence 2346788888876 344 44343 4789999998877 4332221 22245555544 66999998888888886654
Q ss_pred CceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCC-------cc-eeeeeecCC-CCCEEEE---
Q 001352 919 WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEE-------LT-CLKQWFPIS-SVPISQA--- 985 (1093)
Q Consensus 919 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~-------~~-~~~~~~~~h-~~~v~~~--- 985 (1093)
... ....+..-... ..++++.|-+|++.+++ -.+|.+.++.... +. .+.....-| ...|+++
T Consensus 159 ~~~-~l~~va~d~~~----~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~ 233 (321)
T PF03178_consen 159 ENN-KLILVARDYQP----RWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRG 233 (321)
T ss_dssp TTE--EEEEEEESS-----BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE-
T ss_pred cCC-EEEEEEecCCC----ccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEE
Confidence 211 11122221111 25889999877765555 4678899888762 22 222212222 5677777
Q ss_pred EEcc--CCC------EEEEEeCCCcEEEE
Q 001352 986 TFSC--DCR------MVFTSFVDGTLSIH 1006 (1093)
Q Consensus 986 ~fs~--dg~------~l~t~~~dg~v~vw 1006 (1093)
.+.| .+. .++.++.+|.|.+.
T Consensus 234 ~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 234 SLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp -SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EeeecCCCCcccccceEEEEecCCEEEEE
Confidence 4445 222 47778899998843
No 381
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.14 E-value=0.22 Score=54.95 Aligned_cols=84 Identities=12% Similarity=0.247 Sum_probs=59.5
Q ss_pred CceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCC-----------------CCE
Q 001352 531 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-----------------KDQ 593 (1093)
Q Consensus 531 ~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~-----------------~~~ 593 (1093)
..+.+++.+|++++.++. |.-|+|.++|+.++..++.++|.. +..+.-+..... ..+
T Consensus 308 R~~~~i~~sP~~~laA~t----DslGRV~LiD~~~~~vvrmWKGYR--dAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~ 381 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVT----DSLGRVLLIDVARGIVVRMWKGYR--DAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF 381 (415)
T ss_pred ceEEEEEECCCCCEEEEE----cCCCcEEEEECCCChhhhhhccCc--cceEEEEEeecccccccccccccCCCCcceEE
Confidence 357889999998877775 336779999999999999999876 222221211111 112
Q ss_pred EE-EEeCCCcEEEEECCCCceEEEEecC
Q 001352 594 IL-AAGDDHVIKIWDMNKVQLLTTIDAG 620 (1093)
Q Consensus 594 l~-~~~~dg~i~iwd~~~~~~~~~~~~~ 620 (1093)
|+ -+-.-|.|.||.+++|..+..+...
T Consensus 382 LvIyaprRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 382 LVIYAPRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred EEEEeccCCeEEEEecCCCCEEEEEEeC
Confidence 33 3678899999999999988887654
No 382
>PRK10115 protease 2; Provisional
Probab=97.00 E-value=1.2 Score=53.86 Aligned_cols=244 Identities=9% Similarity=0.014 Sum_probs=121.4
Q ss_pred CceeeeecCCCceEEEEEccCC----cEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEE
Q 001352 337 SPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 412 (1093)
Q Consensus 337 ~V~~~~~spdg~~llasg~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~l 412 (1093)
.+..+.+||||++|+.+.+.+| .|++-|+.+|..+.. .....-..++|++|++.|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~---------------------~i~~~~~~~~w~~D~~~~ 186 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE---------------------LLDNVEPSFVWANDSWTF 186 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc---------------------cccCcceEEEEeeCCCEE
Confidence 5778899999997555544444 488999988864421 011112469999999887
Q ss_pred EEEEcC------CEEEEEEccCCCcccceEEeccccccEE-EEEeeCCCCcEEEEEEc-CCCcEEEEECC--CCceeEEe
Q 001352 413 GVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVN-DLAFSAPCKQISVITCG-DDKTIKVWDAV--TGSRTYSF 482 (1093)
Q Consensus 413 as~~~d------~~i~iwd~~~~~~~~~~~~~~~h~~~v~-~~~~s~d~~~l~l~s~~-~d~~i~vwd~~--~~~~~~~~ 482 (1093)
+....+ ..|..+++.++..-... .+........ .+..+.|++.+++-+.+ .++.+.+++.. ++.....+
T Consensus 187 ~y~~~~~~~~~~~~v~~h~lgt~~~~d~l-v~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~ 265 (686)
T PRK10115 187 YYVRKHPVTLLPYQVWRHTIGTPASQDEL-VYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFL 265 (686)
T ss_pred EEEEecCCCCCCCEEEEEECCCChhHCeE-EEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEE
Confidence 776442 36788888887311111 2332223333 33445588853322222 34578888843 34432222
Q ss_pred ecCCCCeEEeeecccCCccEEEEEec-CC--eEEEEEcCC-CCceEEecC-CCCceEEEEEccCCCEEEEEecCCCCcee
Q 001352 483 EGHGAPVYSLCPHAKENIHFIFSISV-DG--KIKAWLYDS-LGARVDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESF 557 (1093)
Q Consensus 483 ~~h~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~vwd~~~-~~~~~~~~~-~~~~v~~~~~s~d~~~l~~~~~~~~~~~~ 557 (1093)
.........+. + ..+ .+.+.... .. .|...++.. .+....+.. ....+..+.+. ++.|+.... .++...
T Consensus 266 ~~~~~~~~~~~-~-~~~-~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~-~~g~~~ 339 (686)
T PRK10115 266 PRRKDHEYSLD-H-YQH-RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEER-QRGLTS 339 (686)
T ss_pred ECCCCCEEEEE-e-CCC-EEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEE-eCCEEE
Confidence 22222222222 1 112 22222222 12 343344442 222223333 23367777776 445554433 234666
Q ss_pred EEEEeCCCCeeeeeee-cccccCCCeEEEEEc--CCCC-EEEEEe---CCCcEEEEECCCCc
Q 001352 558 LVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFD--TAKD-QILAAG---DDHVIKIWDMNKVQ 612 (1093)
Q Consensus 558 i~iwd~~~~~~~~~~~-~~~~~~~~v~~v~~~--~~~~-~l~~~~---~dg~i~iwd~~~~~ 612 (1093)
+.+++..++.. ..+. ... ..+..+.++ +++. .+++.+ .-+.++.+|..+++
T Consensus 340 l~~~~~~~~~~-~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 340 LRQINRKTREV-IGIAFDDP---AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEcCCCCce-EEecCCCC---ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 78888654433 3322 111 122333344 3434 333322 45778888988765
No 383
>PRK10115 protease 2; Provisional
Probab=97.00 E-value=0.91 Score=54.95 Aligned_cols=245 Identities=9% Similarity=0.032 Sum_probs=122.4
Q ss_pred CCeEEEEECCCCCEEEEEEcC-----CEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCC-----Cc
Q 001352 398 VSVNRVVWSPDGSLLGVAYSK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KT 467 (1093)
Q Consensus 398 ~~V~~v~~s~dg~~las~~~d-----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d-----~~ 467 (1093)
-.+..+.|||||++||.+.+. ..|++-|+.+|+.+.. .+.+- -..++|++|++.+ +++...+ ..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--~i~~~---~~~~~w~~D~~~~-~y~~~~~~~~~~~~ 200 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--LLDNV---EPSFVWANDSWTF-YYVRKHPVTLLPYQ 200 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--cccCc---ceEEEEeeCCCEE-EEEEecCCCCCCCE
Confidence 346678899999999987432 2589999998864321 12221 1469999999863 3333222 36
Q ss_pred EEEEECCCC--ceeEEeecCCCCeEEeeecccCCccEEEEEec---CCeEEEEEcCC--CCceEEecCCCCceEEEEEcc
Q 001352 468 IKVWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISV---DGKIKAWLYDS--LGARVDYDAPGLGCTRMAYSA 540 (1093)
Q Consensus 468 i~vwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---dg~i~vwd~~~--~~~~~~~~~~~~~v~~~~~s~ 540 (1093)
|..+++.++ +....+........ +......++.+++..+. ++.+.+++... ................+. .
T Consensus 201 v~~h~lgt~~~~d~lv~~e~~~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~- 277 (686)
T PRK10115 201 VWRHTIGTPASQDELVYEEKDDTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-H- 277 (686)
T ss_pred EEEEECCCChhHCeEEEeeCCCCEE-EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-e-
Confidence 888899888 33334443333333 22222445555554443 34688888533 222222222222222222 2
Q ss_pred CCCEEEEEecCCCCceeEEEEeCC-CCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceEEEEe
Q 001352 541 NGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTID 618 (1093)
Q Consensus 541 d~~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~ 618 (1093)
.+..+...+..+.....|...++. .++. ..+..+. ....+..+.+.. +..+++...+|.-+++-+.. +..+..+.
T Consensus 278 ~~~~ly~~tn~~~~~~~l~~~~~~~~~~~-~~l~~~~-~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~~~~~l~ 354 (686)
T PRK10115 278 YQHRFYLRSNRHGKNFGLYRTRVRDEQQW-EELIPPR-ENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTREVIGIA 354 (686)
T ss_pred CCCEEEEEEcCCCCCceEEEecCCCcccC-eEEECCC-CCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCCceEEec
Confidence 234444444333334556666665 2322 2232221 123577777763 34445566677655554332 22334433
Q ss_pred cCCCCCCCceEEEe--cCCC-EEEEEEC---CCeEEEEEcCCC
Q 001352 619 AGGGLPENPRICFN--KNGT-LLAVIAN---ENRIKILETPES 655 (1093)
Q Consensus 619 ~~~~~~~v~~v~~s--~~~~-~l~~~~~---dg~i~iw~~~~~ 655 (1093)
.... ..+..+.++ +++. +++..+. -+.+..+|..++
T Consensus 355 ~~~~-~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 355 FDDP-AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred CCCC-ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 2111 112222333 3333 3333332 367777777665
No 384
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.0036 Score=69.08 Aligned_cols=94 Identities=20% Similarity=0.380 Sum_probs=73.2
Q ss_pred CCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeE-EEEECCCCCEEEE
Q 001352 336 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN-RVVWSPDGSLLGV 414 (1093)
Q Consensus 336 ~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~v~~s~dg~~las 414 (1093)
..|..+.|+|.-. |+|.+..+|.|.+..++ .+.+.+ +.-|+..++ +++|.|||+.||+
T Consensus 21 ~~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~qRlwt-------------------ip~p~~~v~~sL~W~~DGkllaV 79 (665)
T KOG4640|consen 21 INIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQRLWT-------------------IPIPGENVTASLCWRPDGKLLAV 79 (665)
T ss_pred cceEEEEEcCccc-hhheeccCCcEEEEEec-cceeEe-------------------ccCCCCccceeeeecCCCCEEEE
Confidence 3889999999998 79999999999999887 444433 333666777 9999999999999
Q ss_pred EEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeC
Q 001352 415 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA 452 (1093)
Q Consensus 415 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~ 452 (1093)
|-.||+|++-|+++|..+... ...-...|.++-|++
T Consensus 80 g~kdG~I~L~Dve~~~~l~~~--~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 80 GFKDGTIRLHDVEKGGRLVSF--LFSVETDISKGIWDR 115 (665)
T ss_pred EecCCeEEEEEccCCCceecc--ccccccchheeeccc
Confidence 999999999999998765431 122345677777763
No 385
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.91 E-value=0.71 Score=48.85 Aligned_cols=158 Identities=11% Similarity=0.027 Sum_probs=82.8
Q ss_pred CCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc
Q 001352 841 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG 920 (1093)
Q Consensus 841 ~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~ 920 (1093)
......+..+..++ |+++++++..-....-||--...-...-..-+..|.+|.|+||+.+.+. ...|.|+.=+.....
T Consensus 141 ~~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~-~~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 141 SETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWML-ARGGQIQFSDDPDDG 218 (302)
T ss_dssp -S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEE-ETTTEEEEEE-TTEE
T ss_pred cCCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEE-eCCcEEEEccCCCCc
Confidence 34456788889999 8999988765555566775422111112224678999999999877664 488888887722211
Q ss_pred eeeeee-eecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeeeecC--CCCCEEEEEEccCCCEEEEE
Q 001352 921 IQTCRS-LQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVFTS 997 (1093)
Q Consensus 921 ~~~~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~--h~~~v~~~~fs~dg~~l~t~ 997 (1093)
..-... ....... -.+..++|.+++...|++..|.+. .....|+.-.....+ -......+.|..+.+-++.
T Consensus 219 ~~w~~~~~~~~~~~----~~~ld~a~~~~~~~wa~gg~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l- 292 (302)
T PF14870_consen 219 ETWSEPIIPIKTNG----YGILDLAYRPPNEIWAVGGSGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL- 292 (302)
T ss_dssp EEE---B-TTSS------S-EEEEEESSSS-EEEEESTT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-
T ss_pred cccccccCCcccCc----eeeEEEEecCCCCEEEEeCCccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEEE-
Confidence 000011 1111111 247899999999999988888554 455556554443322 2567889999877665654
Q ss_pred eCCCcEEEE
Q 001352 998 FVDGTLSIH 1006 (1093)
Q Consensus 998 ~~dg~v~vw 1006 (1093)
+.+|.+.=|
T Consensus 293 G~~G~ll~~ 301 (302)
T PF14870_consen 293 GQDGVLLRY 301 (302)
T ss_dssp -STTEEEEE
T ss_pred CCCcEEEEe
Confidence 578877654
No 386
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.87 E-value=0.39 Score=50.11 Aligned_cols=203 Identities=18% Similarity=0.159 Sum_probs=112.8
Q ss_pred CeEEEEEcCCCCCEEEEEe---CCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEe-CCCCce
Q 001352 846 TATSLAFNPHDNNVIAIGM---DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD-VDGWGI 921 (1093)
Q Consensus 846 ~i~~l~~s~~d~~~lasg~---~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd-~~~~~~ 921 (1093)
.+.+.++++ +++.+|... ....++++.... .....+.+ ..++...|++++...+....+...+++. ...+..
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~-~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGG-PVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCC-cceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 688999999 777666554 233555554432 22222233 3688889999988777777677777774 233221
Q ss_pred eeeeeeecCCCcccCCCCceEEEEccCCCEEEEEe----CCeEEEEEcC---Cc--cee---eeeecCCCCCEEEEEEcc
Q 001352 922 QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----ETHLAIYEAE---EL--TCL---KQWFPISSVPISQATFSC 989 (1093)
Q Consensus 922 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~----d~~i~vwd~~---~~--~~~---~~~~~~h~~~v~~~~fs~ 989 (1093)
.. ..+...... ..|+.+++||||..+|... ++.|.|--+. .+ ..+ ..........+..+.|.+
T Consensus 101 ~~-~~v~~~~~~----~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~ 175 (253)
T PF10647_consen 101 EP-VEVDWPGLR----GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD 175 (253)
T ss_pred ee-EEecccccC----CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC
Confidence 11 112222111 1599999999999999843 5677776543 23 111 111112256889999999
Q ss_pred CCCEEEEEeCCCc-EEE-EEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecCCCCCC
Q 001352 990 DCRMVFTSFVDGT-LSI-HEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDT 1067 (1093)
Q Consensus 990 dg~~l~t~~~dg~-v~v-wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~~~ 1067 (1093)
++++++.+...+. +.. ..+..+..- .+ +.. ......+.++-++ .. +.+.+++.+.- ...+..
T Consensus 176 ~~~L~V~~~~~~~~~~~~v~~dG~~~~-~l------~~~--~~~~~v~a~~~~~---~~-~~~t~~~~~~~---~~~~~~ 239 (253)
T PF10647_consen 176 DSTLVVLGRSAGGPVVRLVSVDGGPST-PL------PSV--NLGVPVVAVAASP---ST-VYVTDDGGVLQ---SRSGAS 239 (253)
T ss_pred CCEEEEEeCCCCCceeEEEEccCCccc-cc------CCC--CCCcceEEeeCCC---cE-EEEECCCcEEE---CCCCCc
Confidence 9998776665543 333 333322211 11 111 1223334455444 23 55555555443 556667
Q ss_pred cccCCC
Q 001352 1068 WAVLPP 1073 (1093)
Q Consensus 1068 ~~~~~~ 1073 (1093)
|...+-
T Consensus 240 W~~v~~ 245 (253)
T PF10647_consen 240 WREVPG 245 (253)
T ss_pred ceEccC
Confidence 766543
No 387
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.83 E-value=0.0024 Score=43.55 Aligned_cols=39 Identities=36% Similarity=0.622 Sum_probs=34.2
Q ss_pred cceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEe
Q 001352 877 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 915 (1093)
Q Consensus 877 ~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd 915 (1093)
++....+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345566778899999999999999999999999999996
No 388
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.72 E-value=0.17 Score=52.73 Aligned_cols=147 Identities=18% Similarity=0.167 Sum_probs=91.8
Q ss_pred CCeeEEEEccCCCEEEEEe--CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEE-cCCccee
Q 001352 804 EAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYN-ARSSEVI 880 (1093)
Q Consensus 804 ~~v~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd-~~~~~~~ 880 (1093)
..+...++|+|++.+|... ++.-.+|-...+....... ....++...|++ ++.+.+....+...+++. ..+++..
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcce
Confidence 3678899999999888776 5554444444444333332 233788889999 687777777677777764 3333321
Q ss_pred -eec--ccccCCeEEEEEeCCCCEEEEEe---CCCcEEEEeCCCCcee----eeeeeecCCCcccCCCCceEEEEccCCC
Q 001352 881 -SKL--EGHSKRVTGLVFSDALNILVSSG---GDAQIFVWDVDGWGIQ----TCRSLQTPDGVMTLAPSETHIQFHKDQT 950 (1093)
Q Consensus 881 -~~l--~~h~~~V~~l~~s~dg~~l~s~s---~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 950 (1093)
..+ ..-.+.|+.+.+||||..+|... .++.|.+=-+...... ....+...... ...++.++|.+++.
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~---~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL---LSDVTDVAWSDDST 178 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc---cCcceeeeecCCCE
Confidence 111 11222899999999999988766 3566777655432211 11111222111 13689999999999
Q ss_pred EEEEE
Q 001352 951 RFLLV 955 (1093)
Q Consensus 951 ~l~~~ 955 (1093)
+++.+
T Consensus 179 L~V~~ 183 (253)
T PF10647_consen 179 LVVLG 183 (253)
T ss_pred EEEEe
Confidence 88874
No 389
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.0083 Score=66.32 Aligned_cols=93 Identities=17% Similarity=0.174 Sum_probs=75.5
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeE-EEEEeCCCCEEEEEeCCCcEEEEeCCCCceee
Q 001352 845 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT-GLVFSDALNILVSSGGDAQIFVWDVDGWGIQT 923 (1093)
Q Consensus 845 ~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~-~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~ 923 (1093)
..+.-+.|+| .-.++|++..+|.|.+..+. .+.+.++.-|...++ +++|-|||+.||.|-.||+|++-|+.++....
T Consensus 21 ~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4677889999 88999999999999999988 777888887777787 99999999999999999999999999976444
Q ss_pred eeeeecCCCcccCCCCceEEEEc
Q 001352 924 CRSLQTPDGVMTLAPSETHIQFH 946 (1093)
Q Consensus 924 ~~~~~~~~~~~~~~~~v~~~~~s 946 (1093)
.... ... ..|..+-|+
T Consensus 99 ~~~~----s~e---~~is~~~w~ 114 (665)
T KOG4640|consen 99 SFLF----SVE---TDISKGIWD 114 (665)
T ss_pred cccc----ccc---cchheeecc
Confidence 3211 111 246667776
No 390
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.62 E-value=0.049 Score=59.16 Aligned_cols=144 Identities=13% Similarity=0.131 Sum_probs=96.3
Q ss_pred CCCEEE-EEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEE-----EEEcCCCcEEEEECCCC-c-ee
Q 001352 408 DGSLLG-VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISV-----ITCGDDKTIKVWDAVTG-S-RT 479 (1093)
Q Consensus 408 dg~~la-s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l-----~s~~~d~~i~vwd~~~~-~-~~ 479 (1093)
+..+|. ++.....++=.|++.|+.+. ++.-|.. |+-+.+.|+.+.--+ +.|-.|..|.-||.+-. . .+
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVe---EWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl 419 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVE---EWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL 419 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeee---EeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCccee
Confidence 444443 44445568888999998776 4444555 788888887642111 23445888999997632 2 22
Q ss_pred EEeecCC----CCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCc
Q 001352 480 YSFEGHG----APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 555 (1093)
Q Consensus 480 ~~~~~h~----~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~ 555 (1093)
..-++|. ....|.+- ..+| ++++||.+|.||+||--.......+++-+.+|..+..+.||+++++.+ +
T Consensus 420 ~~~q~kqy~~k~nFsc~aT--T~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-----~ 491 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFAT--TESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-----K 491 (644)
T ss_pred eeeeccccccccccceeee--cCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-----c
Confidence 2223332 22333332 4444 899999999999999755555667788888999999999999998765 5
Q ss_pred eeEEEEeC
Q 001352 556 SFLVEWNE 563 (1093)
Q Consensus 556 ~~i~iwd~ 563 (1093)
.++.+.++
T Consensus 492 tyLlLi~t 499 (644)
T KOG2395|consen 492 TYLLLIDT 499 (644)
T ss_pred cEEEEEEE
Confidence 56766664
No 391
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.61 E-value=0.97 Score=46.10 Aligned_cols=188 Identities=9% Similarity=0.102 Sum_probs=115.0
Q ss_pred CCCeeEEEEccCCCEEEEEe-C--CeEEEEEccCceeEEEECCCC-CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcc
Q 001352 803 QEAVPCFALSKNDAYLFSAS-G--GVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 878 (1093)
Q Consensus 803 ~~~v~~l~~s~dg~~la~~~-d--g~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~ 878 (1093)
..-...+.|..+|.++-+.+ . ..|+.+|+.+++......-.. ----.++.. ++++....-.++...+||..+-+
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~ 121 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLK 121 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccce
Confidence 33456788888888887776 2 469999999998876654332 233445555 45566667789999999999998
Q ss_pred eeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE-eC
Q 001352 879 VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE 957 (1093)
Q Consensus 879 ~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d 957 (1093)
.+.++. ..+.=+.++ .|++.|+.+.....|.++|..+-+......+.. .+... ..+.-+.+- +|...|=. ..
T Consensus 122 ~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~-~g~pv--~~LNELE~i-~G~IyANVW~t 194 (264)
T PF05096_consen 122 KIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTD-NGRPV--SNLNELEYI-NGKIYANVWQT 194 (264)
T ss_dssp EEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EE-TTEE-----EEEEEEE-TTEEEEEETTS
T ss_pred EEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEE-CCEEC--CCcEeEEEE-cCEEEEEeCCC
Confidence 888876 345567777 467777777667779999987755443222221 12111 245556665 55544444 55
Q ss_pred CeEEEEEcCCcceeeeeecC-----------C---CCCEEEEEEccCCCEEEEEeC
Q 001352 958 THLAIYEAEELTCLKQWFPI-----------S---SVPISQATFSCDCRMVFTSFV 999 (1093)
Q Consensus 958 ~~i~vwd~~~~~~~~~~~~~-----------h---~~~v~~~~fs~dg~~l~t~~~ 999 (1093)
..|...|..+|+....+-.. + ..-...+++.|++..|...|.
T Consensus 195 d~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 195 DRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp SEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred CeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 67888899999877653110 1 345788999887666555543
No 392
>PRK13684 Ycf48-like protein; Provisional
Probab=96.59 E-value=1.6 Score=47.84 Aligned_cols=157 Identities=10% Similarity=0.023 Sum_probs=88.1
Q ss_pred cCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcC
Q 001352 887 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAE 966 (1093)
Q Consensus 887 ~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~ 966 (1093)
.+.+.++.+.|++.++++ +..|.+.. ..+.+. .....+.... . ..+..+.+.++++.++++..|.+.+=...
T Consensus 172 ~g~~~~i~~~~~g~~v~~-g~~G~i~~-s~~~gg-~tW~~~~~~~--~---~~l~~i~~~~~g~~~~vg~~G~~~~~s~d 243 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAV-SSRGNFYS-TWEPGQ-TAWTPHQRNS--S---RRLQSMGFQPDGNLWMLARGGQIRFNDPD 243 (334)
T ss_pred cceEEEEEECCCCeEEEE-eCCceEEE-EcCCCC-CeEEEeeCCC--c---ccceeeeEcCCCCEEEEecCCEEEEccCC
Confidence 456889999999866655 45564432 211111 1111222211 1 36889999999999888877776532344
Q ss_pred CcceeeeeecC---CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCC
Q 001352 967 ELTCLKQWFPI---SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLK 1043 (1093)
Q Consensus 967 ~~~~~~~~~~~---h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d 1043 (1093)
.|..-.....+ ....+.++.|.+++..++ ++.+|.|. ...+.|+.-.........+. ..+ .+.|..
T Consensus 244 ~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~~-----~~~--~~~~~~-- 312 (334)
T PRK13684 244 DLESWSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVPS-----NFY--KIVFLD-- 312 (334)
T ss_pred CCCccccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCCc-----ceE--EEEEeC--
Confidence 55433321111 134578899999887666 45677554 55665554333321111111 122 344443
Q ss_pred CCEEEEEeCCCcEEEEecC
Q 001352 1044 PTQFAVGLTNGEVYVIEPN 1062 (1093)
Q Consensus 1044 ~~~l~~~~~dg~v~~w~~~ 1062 (1093)
++...+++..|.|-.|+-.
T Consensus 313 ~~~~~~~G~~G~il~~~~~ 331 (334)
T PRK13684 313 PEKGFVLGQRGVLLRYVGS 331 (334)
T ss_pred CCceEEECCCceEEEecCC
Confidence 3456778888998888653
No 393
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.57 E-value=1.6 Score=47.80 Aligned_cols=113 Identities=23% Similarity=0.287 Sum_probs=59.2
Q ss_pred CceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC---CCEEE
Q 001352 337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD---GSLLG 413 (1093)
Q Consensus 337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d---g~~la 413 (1093)
..+.++|.|||+ ++++ ...|.|++++ ..+..... + -++ ..+..........++|+|+ ..+|.
T Consensus 3 ~P~~~a~~pdG~-l~v~-e~~G~i~~~~-~~g~~~~~--v--~~~--------~~v~~~~~~gllgia~~p~f~~n~~lY 67 (331)
T PF07995_consen 3 NPRSMAFLPDGR-LLVA-ERSGRIWVVD-KDGSLKTP--V--ADL--------PEVFADGERGLLGIAFHPDFASNGYLY 67 (331)
T ss_dssp SEEEEEEETTSC-EEEE-ETTTEEEEEE-TTTEECEE--E--EE---------TTTBTSTTBSEEEEEE-TTCCCC-EEE
T ss_pred CceEEEEeCCCc-EEEE-eCCceEEEEe-CCCcCcce--e--ccc--------ccccccccCCcccceeccccCCCCEEE
Confidence 568999999997 4554 5689999999 55544110 0 000 0113345678899999995 33443
Q ss_pred EE-EcC--------CEEEEEEccCCC-cc---cceE-Eecc---ccccEEEEEeeCCCCcEEEEEEcCCC
Q 001352 414 VA-YSK--------HIVQLYAYHGGS-DA---RQQL-EIDA---HVGNVNDLAFSAPCKQISVITCGDDK 466 (1093)
Q Consensus 414 s~-~~d--------~~i~iwd~~~~~-~~---~~~~-~~~~---h~~~v~~~~~s~d~~~l~l~s~~~d~ 466 (1093)
+. +.. ..|.-|....+. .+ +.+. .+.. ....-..++|.|||. ++++.+..+
T Consensus 68 v~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~--LYvs~G~~~ 135 (331)
T PF07995_consen 68 VYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK--LYVSVGDGG 135 (331)
T ss_dssp EEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE--EEEEEB-TT
T ss_pred EEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc--EEEEeCCCC
Confidence 33 321 245555555441 11 1111 1111 233456799999996 555555443
No 394
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.49 E-value=0.064 Score=63.62 Aligned_cols=145 Identities=12% Similarity=0.115 Sum_probs=97.8
Q ss_pred CcEEEEEEcCCCcEEEEECCCCceeEEeecCCCC-eEEeeeccc---CCccEEEEEecCCeEEEEEcCCCCceEEe-c--
Q 001352 455 KQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP-VYSLCPHAK---ENIHFIFSISVDGKIKAWLYDSLGARVDY-D-- 527 (1093)
Q Consensus 455 ~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~-v~~~~~~~~---~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~-- 527 (1093)
+.++|........|+-.|+++|+.+..+..|... |..++.... -+..-.+.|-.++.+..||.+-....... .
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 3334455556678999999999999999887754 776653211 01234677778888999999875532211 1
Q ss_pred --CCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 001352 528 --APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI 605 (1093)
Q Consensus 528 --~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~i 605 (1093)
.......|++-+.+|. ||+|+. +|.|++||--..+....+.+.. .+|..+..+.||+++++.+. ..+.+
T Consensus 573 ~Y~~~~~Fs~~aTt~~G~-iavgs~----~G~IRLyd~~g~~AKT~lp~lG---~pI~~iDvt~DGkwilaTc~-tyLlL 643 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDGY-IAVGSN----KGDIRLYDRLGKRAKTALPGLG---DPIIGIDVTADGKWILATCK-TYLLL 643 (794)
T ss_pred ccccCCCceEEEecCCce-EEEEeC----CCcEEeecccchhhhhcCCCCC---CCeeEEEecCCCcEEEEeec-ceEEE
Confidence 1233677888877775 556655 5559999954434444455544 89999999999999988775 45666
Q ss_pred EEC
Q 001352 606 WDM 608 (1093)
Q Consensus 606 wd~ 608 (1093)
++.
T Consensus 644 i~t 646 (794)
T PF08553_consen 644 IDT 646 (794)
T ss_pred EEE
Confidence 664
No 395
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.48 E-value=0.045 Score=59.43 Aligned_cols=146 Identities=9% Similarity=0.102 Sum_probs=101.7
Q ss_pred EEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCE--E-----EEEeCCCcEEEEeCCCCceeeeeeeecCC
Q 001352 859 VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNI--L-----VSSGGDAQIFVWDVDGWGIQTCRSLQTPD 931 (1093)
Q Consensus 859 ~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~--l-----~s~s~dg~i~iwd~~~~~~~~~~~~~~~~ 931 (1093)
+|.++.....++--|+..|+.+..+.-|.. |.-+.+.|+.+. | +.|=.|..|+-||..-..... +....
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~k---l~~~q 423 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNK---LAVVQ 423 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcce---eeeee
Confidence 334455556788889999999998887766 788888887632 1 234457778889886432211 11111
Q ss_pred Ccc-cCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 001352 932 GVM-TLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1010 (1093)
Q Consensus 932 ~~~-~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~ 1010 (1093)
++. .......|.+-..+|..++.+.+|.|++||- .+....+.+++-+.+|..+..+.||++|+.. .+..+.+-++.-
T Consensus 424 ~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~T-c~tyLlLi~t~~ 501 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILAT-CKTYLLLIDTLI 501 (644)
T ss_pred ccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEe-cccEEEEEEEec
Confidence 211 1112356677777777777789999999998 6777777788889999999999999998844 467888877643
No 396
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.48 E-value=0.18 Score=59.77 Aligned_cols=99 Identities=19% Similarity=0.236 Sum_probs=70.5
Q ss_pred EEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCC
Q 001352 350 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG 429 (1093)
Q Consensus 350 llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~ 429 (1093)
+++.|+..|.|...|+.+.-.-. .| -..-.++|++++|+.||++++.|-.+|.|.+||+..+
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~-----~~-------------ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~ 162 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPL-----HQ-------------NERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA 162 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchh-----hc-------------CCccCCcceeeEecCCCceeccccCCCcEEEEEccCC
Confidence 58888888999998886631100 00 1124579999999999999999999999999999998
Q ss_pred CcccceEEecccccc---EEEEEeeCCCCcEEEEEEcCCCcEEEEEC
Q 001352 430 SDARQQLEIDAHVGN---VNDLAFSAPCKQISVITCGDDKTIKVWDA 473 (1093)
Q Consensus 430 ~~~~~~~~~~~h~~~---v~~~~~s~d~~~l~l~s~~~d~~i~vwd~ 473 (1093)
+.++. +..|..+ |..+.+..++. .++++...|. +|..
T Consensus 163 k~l~~---i~e~~ap~t~vi~v~~t~~nS--~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 163 KILKV---ITEHGAPVTGVIFVGRTSQNS--KLLTSDTGGS--FWKL 202 (1206)
T ss_pred cceee---eeecCCccceEEEEEEeCCCc--EEEEccCCCc--eEEE
Confidence 87764 3334443 33444555555 6888887776 5653
No 397
>PHA02713 hypothetical protein; Provisional
Probab=96.47 E-value=0.17 Score=59.61 Aligned_cols=197 Identities=10% Similarity=0.020 Sum_probs=105.5
Q ss_pred CCCEEEEEeCC------CeEEEEEcCCcce--eeecccccCCeEEEEEeCCCCEEEEEeCCC-----cEEEEeCCCCcee
Q 001352 856 DNNVIAIGMDD------STILIYNARSSEV--ISKLEGHSKRVTGLVFSDALNILVSSGGDA-----QIFVWDVDGWGIQ 922 (1093)
Q Consensus 856 d~~~lasg~~d------g~i~iwd~~~~~~--~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg-----~i~iwd~~~~~~~ 922 (1093)
++.+.++|+.+ ..+..||..+.+- +..+........ +..-+|+..+.||.++ .+..||..+++-.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~--~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFS--LAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhcee--EEEECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 66777888754 3578889877642 222221111122 2233678888888764 4788998875432
Q ss_pred eeeeeecCCCcccCCCCceEEEEccCCCEEEEEe-C-----------------------CeEEEEEcCCcceeeeeecCC
Q 001352 923 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH-E-----------------------THLAIYEAEELTCLKQWFPIS 978 (1093)
Q Consensus 923 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-d-----------------------~~i~vwd~~~~~~~~~~~~~h 978 (1093)
. +........ .. .+..-+|++.++|+ + ..+..||..+.+-... .+-.
T Consensus 381 ~---~~~mp~~r~---~~--~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v-~~m~ 451 (557)
T PHA02713 381 M---LPDMPIALS---SY--GMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETL-PNFW 451 (557)
T ss_pred E---CCCCCcccc---cc--cEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeec-CCCC
Confidence 2 211111110 11 12233666666642 2 2477888877654322 1111
Q ss_pred CCCEEEEEEccCCCEEEEEeCCC------cEEEEEcCC-CceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEe
Q 001352 979 SVPISQATFSCDCRMVFTSFVDG------TLSIHEASN-LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGL 1051 (1093)
Q Consensus 979 ~~~v~~~~fs~dg~~l~t~~~dg------~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~ 1051 (1093)
..+....+..-+|+..+.||.++ .|..||..+ .+... + ..++.. .....++.. ++..+++|+
T Consensus 452 ~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~-~---~~m~~~-----r~~~~~~~~--~~~iyv~Gg 520 (557)
T PHA02713 452 TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWEL-I---TTTESR-----LSALHTILH--DNTIMMLHC 520 (557)
T ss_pred cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeE-c---cccCcc-----cccceeEEE--CCEEEEEee
Confidence 11222222345677777787642 467788887 44331 1 112221 111223333 478999999
Q ss_pred CCC--cEEEEecCCCCCCcccCCCccc
Q 001352 1052 TNG--EVYVIEPNEPGDTWAVLPPDEI 1076 (1093)
Q Consensus 1052 ~dg--~v~~w~~~~~~~~~~~~~~~~~ 1076 (1093)
.|| ++-.+|+. ..+|...+|.-.
T Consensus 521 ~~~~~~~e~yd~~--~~~W~~~~~~~~ 545 (557)
T PHA02713 521 YESYMLQDTFNVY--TYEWNHICHQHS 545 (557)
T ss_pred ecceeehhhcCcc--cccccchhhhcC
Confidence 999 67777774 456988877653
No 398
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.46 E-value=0.23 Score=58.27 Aligned_cols=234 Identities=12% Similarity=0.024 Sum_probs=125.5
Q ss_pred CCCCEEEEEEcC------CEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCC------CcEEEEECC
Q 001352 407 PDGSLLGVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD------KTIKVWDAV 474 (1093)
Q Consensus 407 ~dg~~las~~~d------~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d------~~i~vwd~~ 474 (1093)
..+..+++|+.+ ..+..||..++.-.. ...+. +...-.+++... +. +.++||.| .++..||..
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~-~a~m~-~~r~~~~~~~~~-~~--lYv~GG~~~~~~~l~~ve~YD~~ 357 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSS-LAPMP-SPRCRVGVAVLN-GK--LYVVGGYDSGSDRLSSVERYDPR 357 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEee-cCCCC-cccccccEEEEC-CE--EEEEccccCCCcccceEEEecCC
Confidence 345566666655 358889988763211 11121 222334455544 34 78888888 357788888
Q ss_pred CCceeE--Eeec--CCCCeEEeeecccCCccEEEEEecCCe-----EEEEEcCCCCceEEecCCCCceEEEEEccCCCEE
Q 001352 475 TGSRTY--SFEG--HGAPVYSLCPHAKENIHFIFSISVDGK-----IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL 545 (1093)
Q Consensus 475 ~~~~~~--~~~~--h~~~v~~~~~~~~~~~~~l~s~~~dg~-----i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 545 (1093)
+++-.. .+.. +...+..+ +|.+.+.|+.||. +..||..+.+-...-......-..-...-+|+..
T Consensus 358 ~~~W~~~a~M~~~R~~~~v~~l------~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iY 431 (571)
T KOG4441|consen 358 TNQWTPVAPMNTKRSDFGVAVL------DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLY 431 (571)
T ss_pred CCceeccCCccCccccceeEEE------CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEE
Confidence 776443 1111 22222222 5678888888875 6667766543322222222122222233467777
Q ss_pred EEEecCCCCc--eeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceEEEEe
Q 001352 546 FSCGTSKEGE--SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH-----VIKIWDMNKVQLLTTID 618 (1093)
Q Consensus 546 ~~~~~~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~ 618 (1093)
++||.++..+ ..+..||..+......-..... ..... ++. -++...++||.|+ +|..||..+.+....-.
T Consensus 432 i~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~-R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~ 508 (571)
T KOG4441|consen 432 IIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTR-RSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAP 508 (571)
T ss_pred EEcCcCCCccccceEEEEcCCCCceeecCCcccc-cccce-EEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEccc
Confidence 7777555432 6788999988765433322220 01112 222 2456666677666 37789988877765533
Q ss_pred cCCCCCCCceEEEecCCCEEEEEECCC-----eEEEEEcCCCc
Q 001352 619 AGGGLPENPRICFNKNGTLLAVIANEN-----RIKILETPESN 656 (1093)
Q Consensus 619 ~~~~~~~v~~v~~s~~~~~l~~~~~dg-----~i~iw~~~~~~ 656 (1093)
.......+.. ..-++...++|+.|| ++..||..+.+
T Consensus 509 m~~~rs~~g~--~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 509 MTSPRSAVGV--VVLGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred CccccccccE--EEECCEEEEEecccCccccceeEEcCCCCCc
Confidence 3222111111 223567777887764 45666665553
No 399
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.40 E-value=1.2 Score=48.54 Aligned_cols=239 Identities=14% Similarity=0.181 Sum_probs=120.1
Q ss_pred CeeEEEEccCCCEEEEEeCCeEEEEEccCcee---EEEE----CCCCCCeEEEEEcCC---CCCEEEEEeCC--------
Q 001352 805 AVPCFALSKNDAYLFSASGGVISLYIVMTFKT---ILTI----MPPSPTATSLAFNPH---DNNVIAIGMDD-------- 866 (1093)
Q Consensus 805 ~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~---~~~~----~~~~~~i~~l~~s~~---d~~~lasg~~d-------- 866 (1093)
..+.|+|.|||+++++-..|.|++++ ..+.. +..+ .........++++|+ ++.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 35689999999998877789999999 44443 2223 123457789999992 23333333321
Q ss_pred CeEEEEEcCCc-------ce-eeeccc---ccCCeEEEEEeCCCCEEEEEeCCCc-------------EEEEeCCCCcee
Q 001352 867 STILIYNARSS-------EV-ISKLEG---HSKRVTGLVFSDALNILVSSGGDAQ-------------IFVWDVDGWGIQ 922 (1093)
Q Consensus 867 g~i~iwd~~~~-------~~-~~~l~~---h~~~V~~l~~s~dg~~l~s~s~dg~-------------i~iwd~~~~~~~ 922 (1093)
..|.-|....+ +. +..+.. ....-..|+|.|||.+.++.+..+. |.-.+... ...
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG-~~p 160 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDG-SIP 160 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTS-SB-
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccC-cCC
Confidence 24444544433 11 112222 1223456999999988887765443 11112111 000
Q ss_pred eeeee--------ec-CCCcccCCCCceEEEEccC-CCEEEE--EeCCeEEEEEcCCcce--------------------
Q 001352 923 TCRSL--------QT-PDGVMTLAPSETHIQFHKD-QTRFLL--VHETHLAIYEAEELTC-------------------- 970 (1093)
Q Consensus 923 ~~~~~--------~~-~~~~~~~~~~v~~~~~s~d-g~~l~~--~~d~~i~vwd~~~~~~-------------------- 970 (1093)
..... .. ..|. .....++|.|. |++.++ +.++.=.|.-+..|.-
T Consensus 161 ~dnP~~~~~~~~~~i~A~Gl----RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~ 236 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGL----RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDA 236 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE------SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTG
T ss_pred CCCccccCCCceEEEEEeCC----CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccc
Confidence 00000 00 0011 12467999999 777776 4443222222222210
Q ss_pred --------eeeeecCCCCCEEEEEEcc-------CCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCcccee
Q 001352 971 --------LKQWFPISSVPISQATFSC-------DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPH 1035 (1093)
Q Consensus 971 --------~~~~~~~h~~~v~~~~fs~-------dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1035 (1093)
....+. +...+..+.|-. .|.++++.-..+.|....+..+..+..... .+ . ...-++.
T Consensus 237 ~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~-~---~~~~r~~ 309 (331)
T PF07995_consen 237 PSCPGFVPPVFAYP-PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEE--FL-G---GFGGRPR 309 (331)
T ss_dssp SS-TTS---SEEET-TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEE--EC-T---TSSS-EE
T ss_pred cCCCCcCccceeec-CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEE--cc-c---cCCCCce
Confidence 000112 345666777753 556777666667788778775543322221 11 1 1122456
Q ss_pred EEEeCCCCCCEEEEEeCCCcEE
Q 001352 1036 AIAAHPLKPTQFAVGLTNGEVY 1057 (1093)
Q Consensus 1036 ~~~~~p~d~~~l~~~~~dg~v~ 1057 (1093)
.+++.| ||.++++...+|.|+
T Consensus 310 ~v~~~p-DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 310 DVAQGP-DGALYVSDDSDGKIY 330 (331)
T ss_dssp EEEEET-TSEEEEEE-TTTTEE
T ss_pred EEEEcC-CCeEEEEECCCCeEe
Confidence 888999 588888888888875
No 400
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.39 E-value=0.16 Score=43.76 Aligned_cols=101 Identities=17% Similarity=0.197 Sum_probs=66.0
Q ss_pred eEEEEEeC---CC-CEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEc
Q 001352 890 VTGLVFSD---AL-NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA 965 (1093)
Q Consensus 890 V~~l~~s~---dg-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~ 965 (1093)
|++|++.. || +.|+.|+.|..|++|+-.. .+...... ..|+.++-...+++..+-.+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-------~~~Ei~e~----~~v~~L~~~~~~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-------IVAEITET----DKVTSLCSLGGGRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-------EEEEEecc----cceEEEEEcCCCEEEEEecCCEEEEEeC
Confidence 67777765 32 6799999999999998765 22222221 2588888888877666678899999975
Q ss_pred CCcceeeeeecCCCCCEEEEEEcc---CCC-EEEEEeCCCcEEE
Q 001352 966 EELTCLKQWFPISSVPISQATFSC---DCR-MVFTSFVDGTLSI 1005 (1093)
Q Consensus 966 ~~~~~~~~~~~~h~~~v~~~~fs~---dg~-~l~t~~~dg~v~v 1005 (1093)
. .+.|.......+.++++.. ||. -|++|=.+|.|-+
T Consensus 71 ~----~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 71 S----QRLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred c----ceeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 2 2233333334466666543 443 4888888887653
No 401
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.38 E-value=0.039 Score=65.12 Aligned_cols=104 Identities=18% Similarity=0.210 Sum_probs=78.6
Q ss_pred CCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCC
Q 001352 408 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 487 (1093)
Q Consensus 408 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~ 487 (1093)
-+..++.|++.|.|-..|+.+. ++....-..-.++|++++|+.||. .++.|-.+|.|.+||+..++.++.+..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 4667889999999999888764 222112223467999999999999 788999999999999999999999988888
Q ss_pred CeEEeeecc-cCCccEEEEEecCCeEEEEEc
Q 001352 488 PVYSLCPHA-KENIHFIFSISVDGKIKAWLY 517 (1093)
Q Consensus 488 ~v~~~~~~~-~~~~~~l~s~~~dg~i~vwd~ 517 (1093)
+.+.+-+.. ..++..++++...|. +|.+
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 887775432 233446777777776 4543
No 402
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.35 E-value=0.01 Score=40.20 Aligned_cols=39 Identities=31% Similarity=0.443 Sum_probs=33.5
Q ss_pred ceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 001352 834 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYN 873 (1093)
Q Consensus 834 ~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd 873 (1093)
++....+..|...+.++.|.+ ++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 345566677888999999999 778999999999999996
No 403
>PHA02713 hypothetical protein; Provisional
Probab=96.34 E-value=0.17 Score=59.66 Aligned_cols=202 Identities=8% Similarity=-0.027 Sum_probs=100.2
Q ss_pred CCCcEEEEEEcCC------CcEEEEECCCCceeE--EeecCCCCeEEeeecccCCccEEEEEecCC-----eEEEEEcCC
Q 001352 453 PCKQISVITCGDD------KTIKVWDAVTGSRTY--SFEGHGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDS 519 (1093)
Q Consensus 453 d~~~l~l~s~~~d------~~i~vwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~vwd~~~ 519 (1093)
++. +++.||.+ ..+..||..+..... .+.........+.+ ++.+.+.|+.++ .+..||..+
T Consensus 303 ~~~--IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~----~g~IYviGG~~~~~~~~sve~Ydp~~ 376 (557)
T PHA02713 303 DNE--IIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI----DDTIYAIGGQNGTNVERTIECYTMGD 376 (557)
T ss_pred CCE--EEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE----CCEEEEECCcCCCCCCceEEEEECCC
Confidence 444 56666643 347788887765321 11111111111211 456667777654 377888775
Q ss_pred CCceEEecCCCCceEEEEEccCCCEEEEEecCCCC-------------------ceeEEEEeCCCCeeeeeeecccccCC
Q 001352 520 LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG-------------------ESFLVEWNESEGAIKRTYQGLQLQHN 580 (1093)
Q Consensus 520 ~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~-------------------~~~i~iwd~~~~~~~~~~~~~~~~~~ 580 (1093)
..=...-..+.......+..-+|+..+.|+.++.. ...+..||+.+.+....-.-.. ...
T Consensus 377 ~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~-~r~ 455 (557)
T PHA02713 377 DKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT-GTI 455 (557)
T ss_pred CeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCc-ccc
Confidence 43221111111111111123367777776643210 2458889988775533222111 001
Q ss_pred CeEEEEEcCCCCEEEEEeCC------CcEEEEECCC-CceEEEEecCCCCCCCceEEEecCCCEEEEEECCC--eEEEEE
Q 001352 581 SVSVVHFDTAKDQILAAGDD------HVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN--RIKILE 651 (1093)
Q Consensus 581 ~v~~v~~~~~~~~l~~~~~d------g~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg--~i~iw~ 651 (1093)
....+. -++...+.|+.+ ..+..||..+ .+....-+..........++ -+|+..++|+.++ .+..||
T Consensus 456 ~~~~~~--~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~yd 531 (557)
T PHA02713 456 RPGVVS--HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYESYMLQDTFN 531 (557)
T ss_pred cCcEEE--ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeecceeehhhcC
Confidence 111222 245555556643 2467899887 56543333322221222222 2688889998888 677788
Q ss_pred cCCCceeeeccccc
Q 001352 652 TPESNSVDAAGVLS 665 (1093)
Q Consensus 652 ~~~~~~~~~~~~~~ 665 (1093)
..+.+.......|.
T Consensus 532 ~~~~~W~~~~~~~~ 545 (557)
T PHA02713 532 VYTYEWNHICHQHS 545 (557)
T ss_pred cccccccchhhhcC
Confidence 87776554444443
No 404
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.30 E-value=0.24 Score=55.13 Aligned_cols=159 Identities=13% Similarity=0.086 Sum_probs=92.6
Q ss_pred CCeEEEEEcCCCCCEEEEEe--CCCeEEEEEcCCcceeeecccccCCeEEEEEeCC----CCEEEEEeCCCcEEEEeCCC
Q 001352 845 PTATSLAFNPHDNNVIAIGM--DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDA----LNILVSSGGDAQIFVWDVDG 918 (1093)
Q Consensus 845 ~~i~~l~~s~~d~~~lasg~--~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d----g~~l~s~s~dg~i~iwd~~~ 918 (1093)
.++..++|.. +.+.+.+.- .+|.+++ .+.+.+.+|+ .|..+.|+|- -..|+.......|.||.+..
T Consensus 20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kf---Gds~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKF---GDSKVIGQFE----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEecC-CCEEEEEeeeeeCCcccc---CCccEeeccc----eeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 4678899984 444444432 2333332 1223445554 4889999985 33566667888899999873
Q ss_pred C--ceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEE
Q 001352 919 W--GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVF 995 (1093)
Q Consensus 919 ~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~ 995 (1093)
. +..+...-++-+-.....--...+.|+|....|++ .....-.++++......-..-....+.|-+.+|..||..|+
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLV 171 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLV 171 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEE
Confidence 2 22221122221111111123467899999999988 44444445566543332222223478999999999999887
Q ss_pred EEeCC-CcEEEEEcCCC
Q 001352 996 TSFVD-GTLSIHEASNL 1011 (1093)
Q Consensus 996 t~~~d-g~v~vwd~~~~ 1011 (1093)
++-.. =.-++||-...
T Consensus 172 VAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 172 VAVGSSLHSYIWDSAQK 188 (671)
T ss_pred EEeCCeEEEEEecCchh
Confidence 66433 24678886554
No 405
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.10 E-value=1.1 Score=48.79 Aligned_cols=206 Identities=13% Similarity=0.038 Sum_probs=91.1
Q ss_pred CCceEEEEEccCCcEEEEecCCCce--eEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEE------c
Q 001352 346 VQHTLLLVGTNVGDTGLWDVNSGQK--LFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY------S 417 (1093)
Q Consensus 346 dg~~llasg~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~------~ 417 (1093)
+.++|++-|-.++.|.|.|+.+.-. ...+.++.-++... ..-.....+-.-|+|+.++++- .
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k----------~g~s~PHT~Hclp~G~imIS~lGd~~G~g 155 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEK----------TGLSRPHTVHCLPDGRIMISALGDADGNG 155 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHH----------H-EEEEEEEEE-SS--EEEEEEEETTS-S
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhh----------cCCCCCceeeecCCccEEEEeccCCCCCC
Confidence 5667676676889999999985322 11111110000000 0001122233346888888862 2
Q ss_pred CCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcC--------------------CCcEEEEECCCCc
Q 001352 418 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--------------------DKTIKVWDAVTGS 477 (1093)
Q Consensus 418 d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~--------------------d~~i~vwd~~~~~ 477 (1093)
.|-+.+.|-++.+.......-.+...--..+-|.|..+ +++|... ..++.+||+.+.+
T Consensus 156 ~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~n--vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~ 233 (461)
T PF05694_consen 156 PGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHN--VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRK 233 (461)
T ss_dssp --EEEEE-TTT--EEEE--SB-TT------EEEETTTT--EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTE
T ss_pred CCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCC--EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCc
Confidence 24577888776543332111111223345667777666 6777642 4579999999999
Q ss_pred eeEEeecCC--CCeEEeeecccCCccEEEE-EecCCeEEEEEc-CCCC----ceEEecCC-----------------CCc
Q 001352 478 RTYSFEGHG--APVYSLCPHAKENIHFIFS-ISVDGKIKAWLY-DSLG----ARVDYDAP-----------------GLG 532 (1093)
Q Consensus 478 ~~~~~~~h~--~~v~~~~~~~~~~~~~l~s-~~~dg~i~vwd~-~~~~----~~~~~~~~-----------------~~~ 532 (1093)
.++++.--. .....+.|...++..+=++ +.-.++|..|-- +.++ .+..+... ..-
T Consensus 234 ~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~L 313 (461)
T PF05694_consen 234 LLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPL 313 (461)
T ss_dssp EEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE---
T ss_pred EeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCc
Confidence 999986543 2345666665655444333 333444544432 2221 11111110 234
Q ss_pred eEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001352 533 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 566 (1093)
Q Consensus 533 v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 566 (1093)
++.+..|.|.++|.++.. ..+.|+.||+...
T Consensus 314 itDI~iSlDDrfLYvs~W---~~GdvrqYDISDP 344 (461)
T PF05694_consen 314 ITDILISLDDRFLYVSNW---LHGDVRQYDISDP 344 (461)
T ss_dssp ---EEE-TTS-EEEEEET---TTTEEEEEE-SST
T ss_pred eEeEEEccCCCEEEEEcc---cCCcEEEEecCCC
Confidence 788999999999998765 3666999998764
No 406
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.08 E-value=3.2 Score=46.18 Aligned_cols=282 Identities=11% Similarity=0.132 Sum_probs=143.6
Q ss_pred cCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEEC---C--CCCEEEEEEcC
Q 001352 344 HPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS---P--DGSLLGVAYSK 418 (1093)
Q Consensus 344 spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s---~--dg~~las~~~d 418 (1093)
+++++-.+++|+.+|.++||+...+..... ...+-..-+.+|-.++.- + +...||+ -.-
T Consensus 33 ~~~~~d~IivGS~~G~LrIy~P~~~~~~~~---------------~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP 96 (418)
T PF14727_consen 33 SPSGSDKIIVGSYSGILRIYDPSGNEFQPE---------------DLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHP 96 (418)
T ss_pred CCCCccEEEEeccccEEEEEccCCCCCCCc---------------cEEEEEecCCcEEEEEeccccCCCCcceEEE-ecC
Confidence 344444689999999999999965442110 000011234677766643 2 2345555 456
Q ss_pred CEEEEEEccCCCcc------cceEEecccccc--EEEEEeeC----CCCcEEEEEEcCCCcEEEEECCCCceeEEeec--
Q 001352 419 HIVQLYAYHGGSDA------RQQLEIDAHVGN--VNDLAFSA----PCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-- 484 (1093)
Q Consensus 419 ~~i~iwd~~~~~~~------~~~~~~~~h~~~--v~~~~~s~----d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~-- 484 (1093)
+.+.||.+...... ..+..+..|.-. ...++.-| .++. .+..-+.||.+.+++-+.-...+.+..
T Consensus 97 ~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~-~IcVQS~DG~L~~feqe~~~f~~~lp~~l 175 (418)
T PF14727_consen 97 RKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRD-FICVQSMDGSLSFFEQESFAFSRFLPDFL 175 (418)
T ss_pred CEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCce-EEEEEecCceEEEEeCCcEEEEEEcCCCC
Confidence 67888888422111 111122233322 22222222 2233 788889999999998555443444433
Q ss_pred CCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCc-----------------------eEEecCCCC--ceEEEEEc
Q 001352 485 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-----------------------RVDYDAPGL--GCTRMAYS 539 (1093)
Q Consensus 485 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-----------------------~~~~~~~~~--~v~~~~~s 539 (1093)
..+|+ ++.+.. ..+++++.+..+..|....... ...+...+. .+..+.++
T Consensus 176 lPgPl---~Y~~~t--Dsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~ 250 (418)
T PF14727_consen 176 LPGPL---CYCPRT--DSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFS 250 (418)
T ss_pred CCcCe---EEeecC--CEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcC
Confidence 34444 443343 4788888888888886532110 011111111 23333343
Q ss_pred cCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcC----CC---CEEEEEeCCCcEEEEECCCCc
Q 001352 540 ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT----AK---DQILAAGDDHVIKIWDMNKVQ 612 (1093)
Q Consensus 540 ~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~----~~---~~l~~~~~dg~i~iwd~~~~~ 612 (1093)
.....+++-+ +..+.+.+. +|......+- . ..+.....|.. ++ ..+++++.++++.||.=. +
T Consensus 251 ~~~~~IvvLg-----er~Lf~l~~-~G~l~~~krL-d--~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~--~ 319 (418)
T PF14727_consen 251 SSESDIVVLG-----ERSLFCLKD-NGSLRFQKRL-D--YNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDT--T 319 (418)
T ss_pred CCCceEEEEe-----cceEEEEcC-CCeEEEEEec-C--CceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCC--e
Confidence 3333444433 445777765 4544322222 2 12222222221 22 248889999999998633 3
Q ss_pred eEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCcee
Q 001352 613 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV 658 (1093)
Q Consensus 613 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 658 (1093)
++.........-.+.-..|..-...+++-+.+|.+.+-=+.+....
T Consensus 320 L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs~ 365 (418)
T PF14727_consen 320 LVWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPSL 365 (418)
T ss_pred EEEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCCcc
Confidence 3333332211111111223333557888888999999877766443
No 407
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.06 E-value=3.3 Score=46.12 Aligned_cols=276 Identities=13% Similarity=0.101 Sum_probs=146.1
Q ss_pred CCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEcc-----CCCEEEE
Q 001352 746 GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK-----NDAYLFS 820 (1093)
Q Consensus 746 ~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-----dg~~la~ 820 (1093)
+...+++|+..|.++||+-..+...+ ...+...+ -..+|..+..-+ +...||+
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~-----------------~~lllE~~-----l~~PILqv~~G~F~s~~~~~~LaV 93 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQP-----------------EDLLLETQ-----LKDPILQVECGKFVSGSEDLQLAV 93 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCC-----------------ccEEEEEe-----cCCcEEEEEeccccCCCCcceEEE
Confidence 34568889999999999753322111 11122222 245566655332 3456777
Q ss_pred EeCCeEEEEEccC--ce-------eEEEECCCC--CCeEEEEEcCC----CCCEEEEEeCCCeEEEEEcCCcceeeeccc
Q 001352 821 ASGGVISLYIVMT--FK-------TILTIMPPS--PTATSLAFNPH----DNNVIAIGMDDSTILIYNARSSEVISKLEG 885 (1093)
Q Consensus 821 ~~dg~i~iwd~~~--~~-------~~~~~~~~~--~~i~~l~~s~~----d~~~lasg~~dg~i~iwd~~~~~~~~~l~~ 885 (1093)
-....+.||.+.. |. .+..+..|. .....+++-|- +..++++=+.||.+.+|+-+.-.....+.+
T Consensus 94 LhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~ 173 (418)
T PF14727_consen 94 LHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD 173 (418)
T ss_pred ecCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC
Confidence 7778888888731 11 112222232 22333333332 246888999999999999776544455554
Q ss_pred ccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCcee---------------------eeeeeecCCCcccCCCCceEEE
Q 001352 886 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ---------------------TCRSLQTPDGVMTLAPSETHIQ 944 (1093)
Q Consensus 886 h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~---------------------~~~~~~~~~~~~~~~~~v~~~~ 944 (1093)
.--...+.+.+....+++++.+..|.-|....-... ....+..-+.. -.+..+.
T Consensus 174 -~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~----l~i~v~~ 248 (418)
T PF14727_consen 174 -FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQA----LDIQVVR 248 (418)
T ss_pred -CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCcee----EEEEEEE
Confidence 222334678888889999999988888876321000 00000000000 0133334
Q ss_pred EccCCCEEEEEeCCeEEEEEcCCcceeeeeecCCCCCEEEE-EEcc----CCC---EEEEEeCCCcEEEEEcCCCceEEE
Q 001352 945 FHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQA-TFSC----DCR---MVFTSFVDGTLSIHEASNLEVQCR 1016 (1093)
Q Consensus 945 ~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~-~fs~----dg~---~l~t~~~dg~v~vwd~~~~~~~~~ 1016 (1093)
++.....+++-.+.++.+.+. +|.......- .....++ .|.. ++. .++.++.++++.||.=.+....+.
T Consensus 249 ~~~~~~~IvvLger~Lf~l~~-~G~l~~~krL--d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~ 325 (418)
T PF14727_consen 249 FSSSESDIVVLGERSLFCLKD-NGSLRFQKRL--DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQ 325 (418)
T ss_pred cCCCCceEEEEecceEEEEcC-CCeEEEEEec--CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecC
Confidence 444444555545666666665 3443322121 1122222 1221 222 477788999999986544333322
Q ss_pred eccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecC
Q 001352 1017 ILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1062 (1093)
Q Consensus 1017 ~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~ 1062 (1093)
. +. .+| .+.++.-++-...|++-+.+|.+.+-=+-
T Consensus 326 l------~~----~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLG 360 (418)
T PF14727_consen 326 L------PH----VPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLG 360 (418)
T ss_pred C------CC----CCE-EEEecccCCCCceEEEEcCCCcEEEEEeC
Confidence 2 11 112 22333322235789999999999886553
No 408
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.03 E-value=2.1 Score=43.74 Aligned_cols=171 Identities=13% Similarity=0.199 Sum_probs=108.5
Q ss_pred ECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeeccc-ccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 001352 840 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 918 (1093)
Q Consensus 840 ~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~-h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~ 918 (1093)
+.+....+.++.|+| +.+.|++......-.|+=..+|+.+.+++- --.....+.+..+|++.++--.++.+.+..++.
T Consensus 81 i~g~~~nvS~LTynp-~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 81 ILGETANVSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred cccccccccceeeCC-CcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence 344555699999999 777777777777777776777998877652 122345688888888888888899999988876
Q ss_pred Ccee-eeeeeecCCCcccC-CCCceEEEEccCCCEEEEEeC-CeEEEEEcCCcce-ee-eeecCC-------CCCEEEEE
Q 001352 919 WGIQ-TCRSLQTPDGVMTL-APSETHIQFHKDQTRFLLVHE-THLAIYEAEELTC-LK-QWFPIS-------SVPISQAT 986 (1093)
Q Consensus 919 ~~~~-~~~~~~~~~~~~~~-~~~v~~~~~s~dg~~l~~~~d-~~i~vwd~~~~~~-~~-~~~~~h-------~~~v~~~~ 986 (1093)
+... .....+..-+.... ......++|+|.+..|....+ +-+.||.+..+.. +. .....+ -..|.++.
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 5321 11111221111111 246889999999988888654 4466665543321 11 001111 23466677
Q ss_pred Ecc-CCCEEEEEeCCCcEEEEEcCCC
Q 001352 987 FSC-DCRMVFTSFVDGTLSIHEASNL 1011 (1093)
Q Consensus 987 fs~-dg~~l~t~~~dg~v~vwd~~~~ 1011 (1093)
|.+ .+.+||-+.+++.+.-.|....
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecCCC
Confidence 775 5667777777777777777654
No 409
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.02 E-value=1.9 Score=44.06 Aligned_cols=204 Identities=16% Similarity=0.245 Sum_probs=122.8
Q ss_pred cccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEcc
Q 001352 734 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 813 (1093)
Q Consensus 734 ~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 813 (1093)
....+.+++|+|+.+.|++........|+- ...|..+.+..+++ -.....+.+..
T Consensus 84 ~~~nvS~LTynp~~rtLFav~n~p~~iVEl----------------------t~~GdlirtiPL~g---~~DpE~Ieyig 138 (316)
T COG3204 84 ETANVSSLTYNPDTRTLFAVTNKPAAIVEL----------------------TKEGDLIRTIPLTG---FSDPETIEYIG 138 (316)
T ss_pred ccccccceeeCCCcceEEEecCCCceEEEE----------------------ecCCceEEEecccc---cCChhHeEEec
Confidence 445599999999999999988876655542 23455566666654 33345677777
Q ss_pred CCCEEEEEe-CCeEEEEEccCceeEEE-------EC--CC-CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcc-e--
Q 001352 814 NDAYLFSAS-GGVISLYIVMTFKTILT-------IM--PP-SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-V-- 879 (1093)
Q Consensus 814 dg~~la~~~-dg~i~iwd~~~~~~~~~-------~~--~~-~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~-~-- 879 (1093)
+|+++++-. ++.+.++.+.....+.. +. .+ +...-.+||+| .+..|..+-+..-+.||....+. .
T Consensus 139 ~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~ 217 (316)
T COG3204 139 GNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLS 217 (316)
T ss_pred CCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCcccc
Confidence 888777665 57787777665432221 11 12 44667899999 66667767777767777665332 1
Q ss_pred eeeccccc-------CCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCE
Q 001352 880 ISKLEGHS-------KRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 951 (1093)
Q Consensus 880 ~~~l~~h~-------~~V~~l~~s~-dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 951 (1093)
+.....+. ..|.++.|.+ .+.+|+-+.+++.+.-.|....-...........+-...-.....++..++|.+
T Consensus 218 ~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~l 297 (316)
T COG3204 218 VHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNL 297 (316)
T ss_pred cccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCE
Confidence 11111222 3466778875 456677777788888888876432221122222221111124566888888887
Q ss_pred EEEEeCCeEEEE
Q 001352 952 FLLVHETHLAIY 963 (1093)
Q Consensus 952 l~~~~d~~i~vw 963 (1093)
-+++..+-.+.+
T Consensus 298 YIvSEPnlfy~F 309 (316)
T COG3204 298 YIVSEPNLFYRF 309 (316)
T ss_pred EEEecCCcceec
Confidence 777765554443
No 410
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.99 E-value=1.2 Score=43.45 Aligned_cols=137 Identities=13% Similarity=0.094 Sum_probs=78.6
Q ss_pred cccEEEEEeeCCCCcEEEEEEcCC---------CcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeE
Q 001352 442 VGNVNDLAFSAPCKQISVITCGDD---------KTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKI 512 (1093)
Q Consensus 442 ~~~v~~~~~s~d~~~l~l~s~~~d---------~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i 512 (1093)
..+.+.-..+|+|+ +++-.-.| |.++.|- .+..+..+...-.--+.++|.. ....+-+.-+.+-.|
T Consensus 108 knR~NDgkvdP~Gr--yy~GtMad~~~~le~~~g~Ly~~~--~~h~v~~i~~~v~IsNgl~Wd~-d~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGR--YYGGTMADFGDDLEPIGGELYSWL--AGHQVELIWNCVGISNGLAWDS-DAKKFYYIDSLNYEV 182 (310)
T ss_pred hcccccCccCCCCc--eeeeeeccccccccccccEEEEec--cCCCceeeehhccCCccccccc-cCcEEEEEccCceEE
Confidence 44667778899998 43322222 2333332 1111222222222334556652 222344556667778
Q ss_pred EEEEcC--CC-----CceEEecC----CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCC
Q 001352 513 KAWLYD--SL-----GARVDYDA----PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS 581 (1093)
Q Consensus 513 ~vwd~~--~~-----~~~~~~~~----~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~ 581 (1093)
.-||.+ ++ +.+..+.. .......+++..+|++.+++-. .++|...|+.+|+.+..+.-.. ..
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n----g~~V~~~dp~tGK~L~eiklPt---~q 255 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN----GGTVQKVDPTTGKILLEIKLPT---PQ 255 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec----CcEEEEECCCCCcEEEEEEcCC---Cc
Confidence 778743 22 22222222 1112345666778888877765 5569999999999999998876 78
Q ss_pred eEEEEEcCC
Q 001352 582 VSVVHFDTA 590 (1093)
Q Consensus 582 v~~v~~~~~ 590 (1093)
+++++|...
T Consensus 256 itsccFgGk 264 (310)
T KOG4499|consen 256 ITSCCFGGK 264 (310)
T ss_pred eEEEEecCC
Confidence 999999754
No 411
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.86 E-value=1.3 Score=48.28 Aligned_cols=154 Identities=12% Similarity=0.076 Sum_probs=74.3
Q ss_pred CccEEEEEe-cCCeEEEEEcCCCCc----eEEecC---CC----CceEEEEEccCCCEEEEEec--CCCCceeEEEEeCC
Q 001352 499 NIHFIFSIS-VDGKIKAWLYDSLGA----RVDYDA---PG----LGCTRMAYSANGRRLFSCGT--SKEGESFLVEWNES 564 (1093)
Q Consensus 499 ~~~~l~s~~-~dg~i~vwd~~~~~~----~~~~~~---~~----~~v~~~~~s~d~~~l~~~~~--~~~~~~~i~iwd~~ 564 (1093)
+.++|+..+ ..++|.+.|+.+... ...++. .. ..-..+-.-|+|+.++++-. .+++.+-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 345666665 678899999874322 112221 00 12234455689988887643 44556778899988
Q ss_pred CCeeeeeeecccccCCCeEEEEEcCCCCEEEEEe--------------------CCCcEEEEECCCCceEEEEecCCCCC
Q 001352 565 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--------------------DDHVIKIWDMNKVQLLTTIDAGGGLP 624 (1093)
Q Consensus 565 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~--------------------~dg~i~iwd~~~~~~~~~~~~~~~~~ 624 (1093)
+.+.+............-..+.+.|..+.+++.. ...++.+||+.+.+.++++.......
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 8888777765442223456677888888888754 24579999999999999998764322
Q ss_pred CCceEEEe--cCCCEEEEEE-CCCeEEEEEc
Q 001352 625 ENPRICFN--KNGTLLAVIA-NENRIKILET 652 (1093)
Q Consensus 625 ~v~~v~~s--~~~~~l~~~~-~dg~i~iw~~ 652 (1093)
....+.|. |+..+=++++ -..+|..|--
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k 276 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYK 276 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEE
Confidence 23456665 4444433332 3444544433
No 412
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.83 E-value=3.2 Score=44.08 Aligned_cols=230 Identities=11% Similarity=0.063 Sum_probs=111.8
Q ss_pred CeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEEEC---CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC-cce-
Q 001352 805 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM---PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEV- 879 (1093)
Q Consensus 805 ~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~-~~~- 879 (1093)
...++.|..+ ..++++..+ +.+.....|+.-..+. .-......+.... ++..++ ++..|.|+ ...+ |+.
T Consensus 63 ~l~~I~f~~~-~g~ivG~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~~~~~l-~~~~G~iy--~T~DgG~tW 136 (302)
T PF14870_consen 63 HLNSISFDGN-EGWIVGEPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALG-DGSAEL-AGDRGAIY--RTTDGGKTW 136 (302)
T ss_dssp EEEEEEEETT-EEEEEEETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEE-TTEEEE-EETT--EE--EESSTTSSE
T ss_pred eEEEEEecCC-ceEEEcCCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcC-CCcEEE-EcCCCcEE--EeCCCCCCe
Confidence 4567777643 445555545 3333333343322221 1222333343333 333333 34455543 3333 321
Q ss_pred eeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCCe
Q 001352 880 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH 959 (1093)
Q Consensus 880 ~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~ 959 (1093)
......-.+.+..+.-++||+++++++.-....-||-.... ......... .+|..+.|+||+.+.+++..+.
T Consensus 137 ~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~---w~~~~r~~~-----~riq~~gf~~~~~lw~~~~Gg~ 208 (302)
T PF14870_consen 137 QAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT---WQPHNRNSS-----RRIQSMGFSPDGNLWMLARGGQ 208 (302)
T ss_dssp EEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS----EEEE--SS-----S-EEEEEE-TTS-EEEEETTTE
T ss_pred eEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc---ceEEccCcc-----ceehhceecCCCCEEEEeCCcE
Confidence 12233445778899999999999888766666678765421 112222211 3699999999999988888888
Q ss_pred EEEEE-cCCcceeee-eec--CCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCcccee
Q 001352 960 LAIYE-AEELTCLKQ-WFP--ISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPH 1035 (1093)
Q Consensus 960 i~vwd-~~~~~~~~~-~~~--~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1035 (1093)
|+.=+ ...++.... ..+ .....+..++|.+++...++|+ .|. .+...+.|+.-.+.......+.. ++
T Consensus 209 ~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~-l~~S~DgGktW~~~~~~~~~~~n-----~~-- 279 (302)
T PF14870_consen 209 IQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGT-LLVSTDGGKTWQKDRVGENVPSN-----LY-- 279 (302)
T ss_dssp EEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT--EEEESSTTSS-EE-GGGTTSSS----------
T ss_pred EEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-Ccc-EEEeCCCCccceECccccCCCCc-----eE--
Confidence 88776 223322221 111 1244589999999988888665 453 45677788776665544444433 44
Q ss_pred EEEeCCCCCCEEEEEeCCCcEEEE
Q 001352 1036 AIAAHPLKPTQFAVGLTNGEVYVI 1059 (1093)
Q Consensus 1036 ~~~~~p~d~~~l~~~~~dg~v~~w 1059 (1093)
.+.|.+ ++.-.+-+.+|.|--|
T Consensus 280 ~i~f~~--~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 280 RIVFVN--PDKGFVLGQDGVLLRY 301 (302)
T ss_dssp EEEEEE--TTEEEEE-STTEEEEE
T ss_pred EEEEcC--CCceEEECCCcEEEEe
Confidence 455553 2466666788877555
No 413
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.64 E-value=0.4 Score=41.33 Aligned_cols=98 Identities=16% Similarity=0.166 Sum_probs=62.9
Q ss_pred eecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcCCEE
Q 001352 342 DFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIV 421 (1093)
Q Consensus 342 ~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d~~i 421 (1093)
.|..||..-|++|+.|..|+||+=+ +.+.+. .-.+.|++++-... .+++.+..+|+|
T Consensus 9 d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei--------------------~e~~~v~~L~~~~~-~~F~Y~l~NGTV 65 (111)
T PF14783_consen 9 DFDGDGENELLVGSDDFEIRVFKGD--EIVAEI--------------------TETDKVTSLCSLGG-GRFAYALANGTV 65 (111)
T ss_pred ecCCCCcceEEEecCCcEEEEEeCC--cEEEEE--------------------ecccceEEEEEcCC-CEEEEEecCCEE
Confidence 3455766678999999999999954 333321 13467888887766 678899999999
Q ss_pred EEEEccCCCcccceEEeccccccEEEEEe---eCCCCcEEEEEEcCCCcEE
Q 001352 422 QLYAYHGGSDARQQLEIDAHVGNVNDLAF---SAPCKQISVITCGDDKTIK 469 (1093)
Q Consensus 422 ~iwd~~~~~~~~~~~~~~~h~~~v~~~~~---s~d~~~l~l~s~~~d~~i~ 469 (1093)
-+|+-.. +.. ..+. ...++++++ ..||.. -|++|=.+|.|-
T Consensus 66 GvY~~~~----RlW-RiKS-K~~~~~~~~~D~~gdG~~-eLI~GwsnGkve 109 (111)
T PF14783_consen 66 GVYDRSQ----RLW-RIKS-KNQVTSMAFYDINGDGVP-ELIVGWSNGKVE 109 (111)
T ss_pred EEEeCcc----eee-eecc-CCCeEEEEEEcCCCCCce-EEEEEecCCeEE
Confidence 9998643 211 2222 223555544 334443 577777777664
No 414
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.56 E-value=0.057 Score=38.56 Aligned_cols=32 Identities=19% Similarity=0.343 Sum_probs=29.1
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCCEEEEEEcc
Q 001352 396 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH 427 (1093)
Q Consensus 396 h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~ 427 (1093)
....|.+++|+|...+||.++.+|.|.+|.++
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 34679999999999999999999999999983
No 415
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.50 E-value=0.88 Score=53.55 Aligned_cols=225 Identities=12% Similarity=0.109 Sum_probs=111.7
Q ss_pred CcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECC------CeEEEEEcCCCceeeecccccccceeeeec
Q 001352 601 HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE------NRIKILETPESNSVDAAGVLSDNLRKLSVN 674 (1093)
Q Consensus 601 g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~ 674 (1093)
..+..+|..+++............ ..+++.. ++...++|+.| .++..||...++......-..... ...
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~-~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~-~~~-- 375 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRC-RVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRS-DFG-- 375 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccc-cccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccc-cce--
Confidence 457788888876655444433221 2334443 46788888888 356777777665433221111111 000
Q ss_pred CCCceeeeeccCCceEecCCCCCCCccceeeccccc-----ceecceeeccCccccccccCccccccceEEEEeecCCce
Q 001352 675 PISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK-----SEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQA 749 (1093)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~-----i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~ 749 (1093)
.. .-+|...+.|+.||. +..||.....-...-.. ....-..-+..-+|+.
T Consensus 376 -------------v~------~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m------~~~r~~~gv~~~~g~i 430 (571)
T KOG4441|consen 376 -------------VA------VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPM------LTRRSGHGVAVLGGKL 430 (571)
T ss_pred -------------eE------EECCEEEEEeccccccccccEEEecCCCCcccccCCC------CcceeeeEEEEECCEE
Confidence 01 124566666776654 45555443222211111 1111222233446777
Q ss_pred EEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CC----
Q 001352 750 IFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GG---- 824 (1093)
Q Consensus 750 l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg---- 824 (1093)
.++++.++.-.. -.++..||+.++.-........ .... ..++ .-++...+.|+ ++
T Consensus 431 Yi~GG~~~~~~~----------------l~sve~YDP~t~~W~~~~~M~~--~R~~-~g~a-~~~~~iYvvGG~~~~~~~ 490 (571)
T KOG4441|consen 431 YIIGGGDGSSNC----------------LNSVECYDPETNTWTLIAPMNT--RRSG-FGVA-VLNGKIYVVGGFDGTSAL 490 (571)
T ss_pred EEEcCcCCCccc----------------cceEEEEcCCCCceeecCCccc--cccc-ceEE-EECCEEEEECCccCCCcc
Confidence 777776654311 1245556666655222222211 1111 1233 33666666665 43
Q ss_pred -eEEEEEccCce--eEEEECCCCCCeEEEEEcCCCCCEEEEEeCCC-----eEEEEEcCCcc
Q 001352 825 -VISLYIVMTFK--TILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-----TILIYNARSSE 878 (1093)
Q Consensus 825 -~i~iwd~~~~~--~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg-----~i~iwd~~~~~ 878 (1093)
++..||..+.+ .+..+......+...++ ++++.++|+.|| +|..||..+.+
T Consensus 491 ~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~---~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 491 SSVERYDPETNQWTMVAPMTSPRSAVGVVVL---GGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred ceEEEEcCCCCceeEcccCccccccccEEEE---CCEEEEEecccCccccceeEEcCCCCCc
Confidence 37778877543 33333333333333333 677888898887 67777766543
No 416
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.43 E-value=3.6 Score=42.08 Aligned_cols=192 Identities=11% Similarity=0.072 Sum_probs=113.1
Q ss_pred cceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCC
Q 001352 736 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 815 (1093)
Q Consensus 736 ~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg 815 (1093)
.-...+.|..+|..+-+++..|.-.+ +.+++.+|+......++ ...--..+++..|.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l--------------------~~~d~~tg~~~~~~~l~---~~~FgEGit~~~d~ 101 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSL--------------------RKVDLETGKVLQSVPLP---PRYFGEGITILGDK 101 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEE--------------------EEEETTTSSEEEEEE-T---TT--EEEEEEETTE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEE--------------------EEEECCCCcEEEEEECC---ccccceeEEEECCE
Confidence 44677888888887777777764333 33455566655555553 23334556666665
Q ss_pred CEEEEEeCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccc--c---CCe
Q 001352 816 AYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH--S---KRV 890 (1093)
Q Consensus 816 ~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h--~---~~V 890 (1093)
-+..+--++...+||..+.+.+.++.- .+.=..++. |++.|+.......++++|..+.+....+.-. . ..+
T Consensus 102 l~qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~L 177 (264)
T PF05096_consen 102 LYQLTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNL 177 (264)
T ss_dssp EEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---E
T ss_pred EEEEEecCCeEEEEccccceEEEEEec-CCcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCc
Confidence 555666689999999999999988863 345566663 5667777776778999999887766555432 1 234
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecC-------CCcccCCCCceEEEEccCCCEEEEE
Q 001352 891 TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP-------DGVMTLAPSETHIQFHKDQTRFLLV 955 (1093)
Q Consensus 891 ~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-------~~~~~~~~~v~~~~~s~dg~~l~~~ 955 (1093)
.-+.+- +|...|=.=....|..-|..+|+.....-+..+ ........-...+|+.|....+.+.
T Consensus 178 NELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vT 248 (264)
T PF05096_consen 178 NELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVT 248 (264)
T ss_dssp EEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEE
T ss_pred EeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEE
Confidence 456665 666666555555677778877765543211111 1111112357899999888777663
No 417
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.22 E-value=5.1 Score=48.73 Aligned_cols=204 Identities=12% Similarity=0.096 Sum_probs=118.1
Q ss_pred CCCEEEEEeCCeEEEEEccCceeEEEECCCCCC--------eEEEEEcC---------------CCCCEEEEEeCCCeEE
Q 001352 814 NDAYLFSASGGVISLYIVMTFKTILTIMPPSPT--------ATSLAFNP---------------HDNNVIAIGMDDSTIL 870 (1093)
Q Consensus 814 dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~--------i~~l~~s~---------------~d~~~lasg~~dg~i~ 870 (1093)
++.++++..++.|.-.|..+|+.+.++...... ...+++-. ..+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 444444444688888899999888877543211 11233321 0234778899999999
Q ss_pred EEEcCCcceeeecccccCCeE-------------EEEEeC--CCCEEEEEeC----------CCcEEEEeCCCCceeeee
Q 001352 871 IYNARSSEVISKLEGHSKRVT-------------GLVFSD--ALNILVSSGG----------DAQIFVWDVDGWGIQTCR 925 (1093)
Q Consensus 871 iwd~~~~~~~~~l~~h~~~V~-------------~l~~s~--dg~~l~s~s~----------dg~i~iwd~~~~~~~~~~ 925 (1093)
-.|.++|+.+..+.. .+.|. .+.-+| .+..++.++. +|.|+-+|..+|+..=..
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999998876532 22110 111111 1345555542 688999999998854322
Q ss_pred eeecC-------CCccc--CCCCc-eEEEEccCCCEEEEE-------------------eCCeEEEEEcCCcceeeeeec
Q 001352 926 SLQTP-------DGVMT--LAPSE-THIQFHKDQTRFLLV-------------------HETHLAIYEAEELTCLKQWFP 976 (1093)
Q Consensus 926 ~~~~~-------~~~~~--~~~~v-~~~~~s~dg~~l~~~-------------------~d~~i~vwd~~~~~~~~~~~~ 976 (1093)
-...+ .+..- ....+ ...++.++..++... ..+.|.-.|+++|+..-.+..
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 11100 00000 00011 334555555555441 124566778889988766544
Q ss_pred CC--------CCCEEEEEEcc-CCC---EEEEEeCCCcEEEEEcCCCceEEEec
Q 001352 977 IS--------SVPISQATFSC-DCR---MVFTSFVDGTLSIHEASNLEVQCRIL 1018 (1093)
Q Consensus 977 ~h--------~~~v~~~~fs~-dg~---~l~t~~~dg~v~vwd~~~~~~~~~~~ 1018 (1093)
.| .....-+.+.. ||+ .++.++.+|.+.+.|-.+|+.+..+.
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 22 11122233333 664 78999999999999999999987654
No 418
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.07 E-value=0.06 Score=52.29 Aligned_cols=102 Identities=16% Similarity=0.189 Sum_probs=69.0
Q ss_pred EEEEE-eCCeEEEEEccCceeE-EEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeeccccc-CCeEEE
Q 001352 817 YLFSA-SGGVISLYIVMTFKTI-LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-KRVTGL 893 (1093)
Q Consensus 817 ~la~~-~dg~i~iwd~~~~~~~-~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~-~~V~~l 893 (1093)
-+++| ++|.|.+|...-.... .........|-++.-.-+++.+..+++.||.|+.|++.-++.+...-.|. .++..+
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ 151 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEEL 151 (238)
T ss_pred eEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCccee
Confidence 34444 5899999987622111 11111222333333333356689999999999999999988888777787 566666
Q ss_pred EEeCCCCEEEEE--eCCCcEEEEeCCC
Q 001352 894 VFSDALNILVSS--GGDAQIFVWDVDG 918 (1093)
Q Consensus 894 ~~s~dg~~l~s~--s~dg~i~iwd~~~ 918 (1093)
..+..++.++++ |.|..++.|++..
T Consensus 152 ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 152 IVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred EEecCCceEEeeccccchhhhhcchhh
Confidence 666677777777 7888888888865
No 419
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.03 E-value=0.28 Score=47.68 Aligned_cols=114 Identities=12% Similarity=0.173 Sum_probs=78.6
Q ss_pred eeeeecCCCceEEEEEccCCcEEEEe--cCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEE
Q 001352 339 MSMDFHPVQHTLLLVGTNVGDTGLWD--VNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 416 (1093)
Q Consensus 339 ~~~~~spdg~~llasg~~dg~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~ 416 (1093)
+.++|+-|.+.+..+-+.+-+|.-|| ..+|....... ++|+... +++... ....++...+|.+.+++.
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~--i~dlrk~-~~~e~~-------~PDGm~ID~eG~L~Va~~ 230 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKV--IFDLRKS-QPFESL-------EPDGMTIDTEGNLYVATF 230 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcce--eEEeccC-CCcCCC-------CCCcceEccCCcEEEEEe
Confidence 56889999988888888888898888 77887665322 3444332 222211 112244455888889999
Q ss_pred cCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCC
Q 001352 417 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD 465 (1093)
Q Consensus 417 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d 465 (1093)
..++|...|..+|+.+. ++.-....|++++|-..+-.++.+|+..+
T Consensus 231 ng~~V~~~dp~tGK~L~---eiklPt~qitsccFgGkn~d~~yvT~aa~ 276 (310)
T KOG4499|consen 231 NGGTVQKVDPTTGKILL---EIKLPTPQITSCCFGGKNLDILYVTTAAK 276 (310)
T ss_pred cCcEEEEECCCCCcEEE---EEEcCCCceEEEEecCCCccEEEEEehhc
Confidence 99999999999998776 44455888999999765444456666543
No 420
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.88 E-value=6.4 Score=43.89 Aligned_cols=139 Identities=14% Similarity=0.155 Sum_probs=78.7
Q ss_pred CCeeEEEEccCCCEEEEEe------------C-CeEEEEEccC--cee--EEEECCCCCCeEEEEEcCCCCCEEEEEeCC
Q 001352 804 EAVPCFALSKNDAYLFSAS------------G-GVISLYIVMT--FKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDD 866 (1093)
Q Consensus 804 ~~v~~l~~s~dg~~la~~~------------d-g~i~iwd~~~--~~~--~~~~~~~~~~i~~l~~s~~d~~~lasg~~d 866 (1093)
.....|+|.++|+++++-. . +.|.+++-.+ |+. ...+.........+++.+ ++ +++ ++..
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCC
Confidence 3456889999999887742 1 2677776442 322 234433344568899998 77 444 4444
Q ss_pred CeEEEEEcCCc-----c--ee-eeccc----ccCCeEEEEEeCCCCEEEEEeCC-------------------CcEEEEe
Q 001352 867 STILIYNARSS-----E--VI-SKLEG----HSKRVTGLVFSDALNILVSSGGD-------------------AQIFVWD 915 (1093)
Q Consensus 867 g~i~iwd~~~~-----~--~~-~~l~~----h~~~V~~l~~s~dg~~l~s~s~d-------------------g~i~iwd 915 (1093)
...++.+.... + .+ ..+.. +......++|.|||.+.++.+.. |.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 33334344321 1 11 22322 12346789999999887766521 3344444
Q ss_pred CCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE
Q 001352 916 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 954 (1093)
Q Consensus 916 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 954 (1093)
.++++. ..+ ..+.. ....++|+|+|+++++
T Consensus 171 pdg~~~---e~~--a~G~r----np~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 171 PDGGKL---RVV--AHGFQ----NPYGHSVDSWGDVFFC 200 (367)
T ss_pred cCCCeE---EEE--ecCcC----CCccceECCCCCEEEE
Confidence 444331 111 12222 2568999999999877
No 421
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=94.76 E-value=13 Score=44.95 Aligned_cols=104 Identities=13% Similarity=0.132 Sum_probs=64.7
Q ss_pred EEEccCCCEEEEEeCCeEEEEEccCceeEEEEC--CCCCCeEEEEEcCCCCCEEEEEeCCCeEEE--EEcCCcceeeecc
Q 001352 809 FALSKNDAYLFSASGGVISLYIVMTFKTILTIM--PPSPTATSLAFNPHDNNVIAIGMDDSTILI--YNARSSEVISKLE 884 (1093)
Q Consensus 809 l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~d~~~lasg~~dg~i~i--wd~~~~~~~~~l~ 884 (1093)
.|+.|-..++.+|-...+++||+...+.++... .....|+.+.+. +..+++|..--.|.+ |+-... .+..+.
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~---~~RI~VgD~qeSV~~~~y~~~~n-~l~~fa 1014 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY---GARIVVGDIQESVHFVRYRREDN-QLIVFA 1014 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec---ceEEEEeeccceEEEEEEecCCC-eEEEEe
Confidence 456677778888888999999998777665533 234567777774 457777776555555 444433 334443
Q ss_pred c--ccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 001352 885 G--HSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 917 (1093)
Q Consensus 885 ~--h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~ 917 (1093)
+ -...|+++.+- |-..+|.+..=|.+.+-.+.
T Consensus 1015 dD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1015 DDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred CCCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence 3 23346666665 44567766665655554443
No 422
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.73 E-value=4.4 Score=48.82 Aligned_cols=72 Identities=11% Similarity=0.185 Sum_probs=50.8
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC----------cce--ee-ec--------ccccCCeEEEEEeCC---CC
Q 001352 845 PTATSLAFNPHDNNVIAIGMDDSTILIYNARS----------SEV--IS-KL--------EGHSKRVTGLVFSDA---LN 900 (1093)
Q Consensus 845 ~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~----------~~~--~~-~l--------~~h~~~V~~l~~s~d---g~ 900 (1093)
-.|..+.++| +|++||..+..|.+ |-.+.. |+. .. .+ ..+...|..+.|+|. +.
T Consensus 85 f~v~~i~~n~-~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLNP-TGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEECC-CCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 4788999999 89999988887633 333321 111 11 11 134567889999986 47
Q ss_pred EEEEEeCCCcEEEEeCCC
Q 001352 901 ILVSSGGDAQIFVWDVDG 918 (1093)
Q Consensus 901 ~l~s~s~dg~i~iwd~~~ 918 (1093)
+|+.-..|+++|+||+..
T Consensus 163 ~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISD 180 (717)
T ss_pred eEEEEecCCEEEEEecCC
Confidence 888889999999999975
No 423
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.57 E-value=3.9 Score=41.30 Aligned_cols=192 Identities=12% Similarity=0.103 Sum_probs=127.0
Q ss_pred CeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeee
Q 001352 846 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCR 925 (1093)
Q Consensus 846 ~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~ 925 (1093)
.-..++-+| ||..-+++...|.|--.|..+|+....--+....-..+..-|||...++-+.. -|.-.|-++.+...
T Consensus 63 ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~-- 138 (353)
T COG4257 63 APFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTR-- 138 (353)
T ss_pred CccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEE--
Confidence 345677888 88888888888888888999998766555555666778888999887764444 35555666655333
Q ss_pred eeecCCCcccCCCCceEEEEccCCCEEEEEeC----------CeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEE
Q 001352 926 SLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE----------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVF 995 (1093)
Q Consensus 926 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d----------~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~ 995 (1093)
.+.+..+.. .......|.+.|++-.++.. +.+++|+.. .......++..|||...+
T Consensus 139 -f~lp~~~a~--~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP-----------qG~gpyGi~atpdGsvwy 204 (353)
T COG4257 139 -FPLPLEHAD--ANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP-----------QGGGPYGICATPDGSVWY 204 (353)
T ss_pred -eecccccCC--CcccceeeCCCccEEEeeccccceecCcccCceeeeccC-----------CCCCCcceEECCCCcEEE
Confidence 222222222 35788999999999888543 235555543 244566788999999988
Q ss_pred EEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecCCC
Q 001352 996 TSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1064 (1093)
Q Consensus 996 t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~ 1064 (1093)
+.-.+..|..-|..++... .+.....+..+ +..+..+|+ +..-++....+.++-+|.+..
T Consensus 205 aslagnaiaridp~~~~ae-v~p~P~~~~~g-------sRriwsdpi-g~~wittwg~g~l~rfdPs~~ 264 (353)
T COG4257 205 ASLAGNAIARIDPFAGHAE-VVPQPNALKAG-------SRRIWSDPI-GRAWITTWGTGSLHRFDPSVT 264 (353)
T ss_pred EeccccceEEcccccCCcc-eecCCCccccc-------ccccccCcc-CcEEEeccCCceeeEeCcccc
Confidence 8777778888887777222 22212211111 223446664 777888777888888887543
No 424
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.56 E-value=0.13 Score=36.83 Aligned_cols=34 Identities=21% Similarity=0.537 Sum_probs=29.9
Q ss_pred CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcce
Q 001352 844 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 879 (1093)
Q Consensus 844 ~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~ 879 (1093)
...|.+++|+| ...+||.|+.+|.|.+|.+ +++.
T Consensus 11 ~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCP-TMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECC-CCCEEEEEECCCeEEEEEC-CCcC
Confidence 45799999999 8999999999999999998 4554
No 425
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.42 E-value=1 Score=52.37 Aligned_cols=124 Identities=9% Similarity=0.083 Sum_probs=76.8
Q ss_pred ECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecc-cccCCeEEEEEe--CCCCEEEEEeCCCcEEEEeC
Q 001352 840 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-GHSKRVTGLVFS--DALNILVSSGGDAQIFVWDV 916 (1093)
Q Consensus 840 ~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~-~h~~~V~~l~~s--~dg~~l~s~s~dg~i~iwd~ 916 (1093)
+...-...+-+.-|. -++..++-+....+.|||...+.....-. ...+.|..+.|. |||+.+++.|..+.|.++.-
T Consensus 25 ~~T~i~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 25 FETGISNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred EecCCCCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 333344555555555 45555555555699999999876443221 356789999886 78999999999999999854
Q ss_pred CC----CceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEc
Q 001352 917 DG----WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA 965 (1093)
Q Consensus 917 ~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~ 965 (1093)
.. ........++...-....+.+|.+..|.+||.+++ +.++.+.|+|-
T Consensus 104 ~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV-~sGNqlfv~dk 155 (631)
T PF12234_consen 104 LRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVV-GSGNQLFVFDK 155 (631)
T ss_pred cchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEE-EeCCEEEEECC
Confidence 31 11111112222111111113688999999998655 44567888764
No 426
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.42 E-value=3.1 Score=48.09 Aligned_cols=182 Identities=12% Similarity=0.141 Sum_probs=99.0
Q ss_pred eEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeee--c--ccccCCeEEEEEeCCCC
Q 001352 825 VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK--L--EGHSKRVTGLVFSDALN 900 (1093)
Q Consensus 825 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~--l--~~h~~~V~~l~~s~dg~ 900 (1093)
.|+|+++. |..+..+.-..+.+..+.|+. ..-|++...+|++++|++. |+.+.. . +.....|..+.|..+|-
T Consensus 65 ~I~If~~s-G~lL~~~~w~~~~lI~mgWs~--~eeLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 65 YIRIFNIS-GQLLGRILWKHGELIGMGWSD--DEELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred eEEEEecc-ccchHHHHhcCCCeeeecccC--CceEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCce
Confidence 47888864 666655544445888999996 4566678899999999987 333332 1 22334466666666664
Q ss_pred EEEEEeCCCcE-EEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCE--EEEEeC--CeEEEEEcCCcceeeeee
Q 001352 901 ILVSSGGDAQI-FVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR--FLLVHE--THLAIYEAEELTCLKQWF 975 (1093)
Q Consensus 901 ~l~s~s~dg~i-~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~--l~~~~d--~~i~vwd~~~~~~~~~~~ 975 (1093)
.+.+. +|++ .+-+.+.... ..+...++... .-.+...-+++.. ++..-+ -...++..+++.....-+
T Consensus 141 avlt~--~g~v~~i~~~~~~~~---~~~~diP~~~~---~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~ 212 (829)
T KOG2280|consen 141 AVLTV--SGQVILINGVEEPKL---RKMPDIPYNEL---PKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHAL 212 (829)
T ss_pred EEEec--CCcEEEEcCCCcchh---hhCCCCCCccC---CCcceeEecCCCcceeEEeechhhhhcccceeccccccccc
Confidence 44443 3433 3333333111 11111111111 1123333333221 111111 111222222222111111
Q ss_pred cCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEec
Q 001352 976 PISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1018 (1093)
Q Consensus 976 ~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~ 1018 (1093)
......+..+..||+.++|+--..+|.|.+-+.+..+..+.+.
T Consensus 213 ~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 213 SWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred CCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 1113578889999999999999999999999999988888877
No 427
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.23 E-value=1.1 Score=53.90 Aligned_cols=94 Identities=16% Similarity=0.220 Sum_probs=63.4
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC----------C--ceEEEeccccccCCCCCCCccceeEEEeCCC--CC
Q 001352 979 SVPISQATFSCDCRMVFTSFVDGTLSIHEASN----------L--EVQCRILSTAYLRPTTSCLHVYPHAIAAHPL--KP 1044 (1093)
Q Consensus 979 ~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~----------~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~--d~ 1044 (1093)
.-.|..+.++|+|++|+..|..| |.|-.++. | ...|+..+....-.. ....+....+.|||. ++
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~-~~~~~~i~qv~WhP~s~~~ 161 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFT-SNSSLEIKQVRWHPWSESD 161 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhcc-CCCCceEEEEEEcCCCCCC
Confidence 45788999999999999998765 66666542 1 223433322111111 123345568899995 35
Q ss_pred CEEEEEeCCCcEEEEecCCCCCCcccCCCc
Q 001352 1045 TQFAVGLTNGEVYVIEPNEPGDTWAVLPPD 1074 (1093)
Q Consensus 1045 ~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~ 1074 (1093)
..|++-+.|+++++||+.+...-|.+.+-.
T Consensus 162 ~~l~vLtsdn~lR~y~~~~~~~p~~v~~~~ 191 (717)
T PF10168_consen 162 SHLVVLTSDNTLRLYDISDPQHPWQVLSLS 191 (717)
T ss_pred CeEEEEecCCEEEEEecCCCCCCeEEEEcc
Confidence 789999999999999998877767776533
No 428
>PHA03098 kelch-like protein; Provisional
Probab=94.17 E-value=1.8 Score=51.44 Aligned_cols=153 Identities=8% Similarity=-0.029 Sum_probs=73.2
Q ss_pred CccEEEEEecC-----CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCC--CceeEEEEeCCCCeeeee
Q 001352 499 NIHFIFSISVD-----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE--GESFLVEWNESEGAIKRT 571 (1093)
Q Consensus 499 ~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~--~~~~i~iwd~~~~~~~~~ 571 (1093)
++.+.+.|+.+ ..+..||..+..-...-..+.......+..-+++..+.|+.... .-..+..||+.+.+....
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 421 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG 421 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence 44566667655 24667776654322111111111111122345666666663221 124688999887654332
Q ss_pred eecccccCCCeEEEEEcCCCCEEEEEeCC--------CcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEEC
Q 001352 572 YQGLQLQHNSVSVVHFDTAKDQILAAGDD--------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 643 (1093)
Q Consensus 572 ~~~~~~~~~~v~~v~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 643 (1093)
-.... ..... +++ ..++..++.||.+ ..+.+||..+++....-..... .....+..-+++.++.|+.
T Consensus 422 ~~~p~-~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~--r~~~~~~~~~~~iyv~GG~ 496 (534)
T PHA03098 422 SPLPI-SHYGG-CAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP--RINASLCIFNNKIYVVGGD 496 (534)
T ss_pred CCCCc-cccCc-eEE-EECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc--cccceEEEECCEEEEEcCC
Confidence 21111 00111 222 2244555556532 2388899888766543222111 1111122236777777765
Q ss_pred C-----CeEEEEEcCCCc
Q 001352 644 E-----NRIKILETPESN 656 (1093)
Q Consensus 644 d-----g~i~iw~~~~~~ 656 (1093)
+ +.+.+||..+.+
T Consensus 497 ~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 497 KYEYYINEIEVYDDKTNT 514 (534)
T ss_pred cCCcccceeEEEeCCCCE
Confidence 4 467778777653
No 429
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.05 E-value=1.3 Score=51.48 Aligned_cols=112 Identities=13% Similarity=0.192 Sum_probs=77.0
Q ss_pred cEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEee-cCCCCeEEeeecccCCccEEEEEecCCeEEEEEc-----
Q 001352 444 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLY----- 517 (1093)
Q Consensus 444 ~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~----- 517 (1093)
...-+.-|.-++ ..+.-+...++.|||...+...++-. ...+.|..+.|...++++.+++.+..+.|.++--
T Consensus 31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 344455555555 34444445579999999887654332 3578899999999999999999999999999843
Q ss_pred CCCC----ceE--EecC-CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001352 518 DSLG----ARV--DYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 563 (1093)
Q Consensus 518 ~~~~----~~~--~~~~-~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 563 (1093)
.... .+. .+.. ..++|....|.++|..++.++. ++.++|-
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN------qlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN------QLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCC------EEEEECC
Confidence 1111 111 1222 3357889999999988887643 4788774
No 430
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=93.95 E-value=0.19 Score=48.93 Aligned_cols=106 Identities=12% Similarity=0.053 Sum_probs=64.3
Q ss_pred CCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEE-EeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCC
Q 001352 408 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDL-AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 486 (1093)
Q Consensus 408 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~-~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~ 486 (1093)
-+..+++|+.+|.|.+|.+......... ...-...|.++ .-..++. +..+++.||.|+.|++.-++.+.....|.
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~--~~s~~e~i~~~Ip~~~~~~--~~c~~~~dg~ir~~n~~p~k~~g~~g~h~ 144 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDR--VCSGEESIDLGIPNGRDSS--LGCVGAQDGRIRACNIKPNKVLGYVGQHN 144 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHh--hhcccccceeccccccccc--eeEEeccCCceeeeccccCceeeeecccc
Confidence 3567889999999999998732211111 11112223332 2233444 68889999999999999998887777676
Q ss_pred -CCeEEeeecccCCccEEEEE--ecCCeEEEEEcCC
Q 001352 487 -APVYSLCPHAKENIHFIFSI--SVDGKIKAWLYDS 519 (1093)
Q Consensus 487 -~~v~~~~~~~~~~~~~l~s~--~~dg~i~vwd~~~ 519 (1093)
.++...... ..+..++.+ |.|..++.|++..
T Consensus 145 ~~~~e~~ivv--~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 145 FESGEELIVV--GSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CCCcceeEEe--cCCceEEeeccccchhhhhcchhh
Confidence 444333332 223455555 6666666666543
No 431
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=93.88 E-value=20 Score=43.53 Aligned_cols=121 Identities=12% Similarity=-0.040 Sum_probs=75.6
Q ss_pred EEEccCCCEEEEEeCCeEEEEEcCCcceeeeeecCC-CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce-EEEeccc
Q 001352 943 IQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV-QCRILST 1020 (1093)
Q Consensus 943 ~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h-~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~-~~~~~~~ 1020 (1093)
.|..|-..++++|....+++||+...+.++.....+ ...|+++++ .+..+++|...-.|.++....... +..|. .
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~fa-d 1015 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLIVFA-D 1015 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEEEEe-C
Confidence 466777778888888999999998887776654444 556777665 456777777666666655444322 22222 2
Q ss_pred cccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecCCCCCCcccCCCcc
Q 001352 1021 AYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1075 (1093)
Q Consensus 1021 ~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~ 1075 (1093)
...|.. |..+. .- |-..+|.+..=|.+.+-+++..-.+-+...|.+
T Consensus 1016 D~~pR~-----Vt~~~---~l-D~~tvagaDrfGNi~~vR~P~d~~e~~~edpt~ 1061 (1205)
T KOG1898|consen 1016 DPVPRH-----VTALE---LL-DYDTVAGADRFGNIAVVRIPPDVSEEASEDPTE 1061 (1205)
T ss_pred CCccce-----eeEEE---Ee-cCCceeeccccCcEEEEECCCcchhhhccCCcc
Confidence 222222 33222 21 456899999999999999876655544444433
No 432
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.54 E-value=3.7 Score=40.33 Aligned_cols=150 Identities=11% Similarity=0.106 Sum_probs=83.7
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEe----CC---eEEEE---EcC--C
Q 001352 900 NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----ET---HLAIY---EAE--E 967 (1093)
Q Consensus 900 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~----d~---~i~vw---d~~--~ 967 (1093)
+.|..+.....|.+|++...+........+. +.|..++++..|++|++-. .. .+++| +.. .
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-------~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~ 101 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-------GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEE 101 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-------hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhccc
Confidence 4444445667799999995443332233332 2588999999999999931 22 46665 222 1
Q ss_pred cceeeeeecCC---------------------CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce-EEEeccccccCC
Q 001352 968 LTCLKQWFPIS---------------------SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV-QCRILSTAYLRP 1025 (1093)
Q Consensus 968 ~~~~~~~~~~h---------------------~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~-~~~~~~~~~~~~ 1025 (1093)
...++.-..|| +.++.+++-.|-..-|+.|+ ++.+.+|.+..... ..++...++...
T Consensus 102 ~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~ 180 (215)
T PF14761_consen 102 NSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERS 180 (215)
T ss_pred CCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechhh
Confidence 22222222232 34555666666433445454 56899998876655 332322233221
Q ss_pred C-CCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEec
Q 001352 1026 T-TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1061 (1093)
Q Consensus 1026 ~-~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~ 1061 (1093)
- .|...+.+..+++. +.++|.. .+-.++++++
T Consensus 181 l~~~~~~~~p~~v~ic---~~yiA~~-s~~ev~Vlkl 213 (215)
T PF14761_consen 181 LIDHIDNFKPTQVAIC---EGYIAVM-SDLEVLVLKL 213 (215)
T ss_pred hhheecCceEEEEEEE---eeEEEEe-cCCEEEEEEE
Confidence 1 23445667677776 3566655 4556677665
No 433
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.39 E-value=2.4 Score=45.66 Aligned_cols=146 Identities=8% Similarity=0.049 Sum_probs=89.0
Q ss_pred CeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc--ceeeec-ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCcee
Q 001352 846 TATSLAFNPHDNNVIAIGMDDSTILIYNARSS--EVISKL-EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ 922 (1093)
Q Consensus 846 ~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~--~~~~~l-~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~ 922 (1093)
..+.+-|.. .++.|+ +...|.+.=|-.... ...-.+ ....++|.++.||+|.+.||.--.|.+|.+.+....+..
T Consensus 24 esngvFfDD-aNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~ 101 (657)
T KOG2377|consen 24 ESNGVFFDD-ANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQ 101 (657)
T ss_pred cccceeecc-CcceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchh
Confidence 345566654 344444 333444555554422 111122 235679999999999999999999999999999654422
Q ss_pred eeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEe
Q 001352 923 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF 998 (1093)
Q Consensus 923 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~ 998 (1093)
.........+. ..|....|+.. .-+|...+..+.+|....-.........|...|.-..|.++-+.++-++
T Consensus 102 l~~~~~ck~k~----~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 102 LEYTQECKTKN----ANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred hHHHHHhccCc----ceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 21111111111 24788888877 6667666777777776544333333556777888888888887655443
No 434
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=93.04 E-value=10 Score=40.30 Aligned_cols=189 Identities=10% Similarity=0.046 Sum_probs=102.8
Q ss_pred eeEEEEccCCCEEEEEe-----C--------CeEEEEEccCceeEEEECCC------CCCeEEEEEcCCCC----CEEEE
Q 001352 806 VPCFALSKNDAYLFSAS-----G--------GVISLYIVMTFKTILTIMPP------SPTATSLAFNPHDN----NVIAI 862 (1093)
Q Consensus 806 v~~l~~s~dg~~la~~~-----d--------g~i~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~d~----~~las 862 (1093)
|..+...+++++-+.=+ . -+|.+||+.+.+.++++.-+ .+....+.+...++ .++..
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI 82 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI 82 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Confidence 45566666666555421 1 25889999999988876532 34567777765222 34444
Q ss_pred Ee-CCCeEEEEEcCCcceeeecccc-------------------cCCeEEEEEeC---CCCEEEEEeCCCcEEEEeCCCC
Q 001352 863 GM-DDSTILIYNARSSEVISKLEGH-------------------SKRVTGLVFSD---ALNILVSSGGDAQIFVWDVDGW 919 (1093)
Q Consensus 863 g~-~dg~i~iwd~~~~~~~~~l~~h-------------------~~~V~~l~~s~---dg~~l~s~s~dg~i~iwd~~~~ 919 (1093)
.. ..+.|.|+|+.+++.-+.+..+ .+.+..++.+| |+++|.-....+ -++|.+.+.
T Consensus 83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~ 161 (287)
T PF03022_consen 83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTS 161 (287)
T ss_dssp EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHH
T ss_pred eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHH
Confidence 43 3458999999988754444322 12355666655 666666555444 345554432
Q ss_pred ceeeee---------eeecCCCcccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcc---eeeeee-cCC-CCCEEE
Q 001352 920 GIQTCR---------SLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELT---CLKQWF-PIS-SVPISQ 984 (1093)
Q Consensus 920 ~~~~~~---------~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~---~~~~~~-~~h-~~~v~~ 984 (1093)
...... .++.. +... .....++++++|.+..+ ...+.|..|+..+.- ....+. ... -..+..
T Consensus 162 ~L~~~~~~~~~~~~~~v~~l-G~k~--~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~ 238 (287)
T PF03022_consen 162 VLRDPSLSDAQALASQVQDL-GDKG--SQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDG 238 (287)
T ss_dssp HHCSTT--HHH-HHHT-EEE-EE-----SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEE
T ss_pred HhhCccccccccccccceec-cccC--CCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccce
Confidence 111100 00110 0000 13567899999998888 578899999988621 112222 222 357788
Q ss_pred EEEcc--CCCEEEEEe
Q 001352 985 ATFSC--DCRMVFTSF 998 (1093)
Q Consensus 985 ~~fs~--dg~~l~t~~ 998 (1093)
+.+.+ +|.+.+.+.
T Consensus 239 ~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 239 LKIDPEGDGYLWVLSN 254 (287)
T ss_dssp EEE-T--TS-EEEEE-
T ss_pred eeeccccCceEEEEEC
Confidence 88988 787766653
No 435
>PHA03098 kelch-like protein; Provisional
Probab=93.03 E-value=2.9 Score=49.62 Aligned_cols=195 Identities=11% Similarity=0.008 Sum_probs=89.9
Q ss_pred CCCEEEEEEcCC------EEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCC-----CcEEEEECCCC
Q 001352 408 DGSLLGVAYSKH------IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVTG 476 (1093)
Q Consensus 408 dg~~las~~~d~------~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d-----~~i~vwd~~~~ 476 (1093)
++..++.|+.++ .+..||..+++-.. ...+.........+ .-+++ +++.||.+ ..+..||..++
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~R~~~~~~--~~~~~--lyv~GG~~~~~~~~~v~~yd~~~~ 368 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-VPELIYPRKNPGVT--VFNNR--IYVIGGIYNSISLNTVESWKPGES 368 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeE-CCCCCcccccceEE--EECCE--EEEEeCCCCCEecceEEEEcCCCC
Confidence 455666665432 47788887754321 11111111111222 22455 56666654 35778888776
Q ss_pred ceeEE--eecCCCCeEEeeecccCCccEEEEEecC------CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001352 477 SRTYS--FEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 548 (1093)
Q Consensus 477 ~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 548 (1093)
+.... +...... .+++. . ++.+.+.|+.+ +.+..||..+.+-...-..+.......+...+++..+.|
T Consensus 369 ~W~~~~~lp~~r~~-~~~~~--~-~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~G 444 (534)
T PHA03098 369 KWREEPPLIFPRYN-PCVVN--V-NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIG 444 (534)
T ss_pred ceeeCCCcCcCCcc-ceEEE--E-CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEEC
Confidence 54321 1111111 11111 1 44566666632 357788876543221111111111112233456666666
Q ss_pred ecCCCC----ceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceE
Q 001352 549 GTSKEG----ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLL 614 (1093)
Q Consensus 549 ~~~~~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~ 614 (1093)
+..... -..+.+||..+++....-.... .......+.+ ++..++.|+.+ +.+.+||..+.+..
T Consensus 445 G~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 516 (534)
T PHA03098 445 GISYIDNIKVYNIVESYNPVTNKWTELSSLNF-PRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNTWT 516 (534)
T ss_pred CccCCCCCcccceEEEecCCCCceeeCCCCCc-ccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCEEE
Confidence 543221 1348899988776543221111 0111222222 55566666643 46788888776653
No 436
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=92.76 E-value=14 Score=38.41 Aligned_cols=206 Identities=13% Similarity=0.102 Sum_probs=116.4
Q ss_pred eeEEEEccCCCEEEEEe-CCeEEEEEcc------Cc-eeEEEECC-----CCCCeEEEEEcCCCCCE------------E
Q 001352 806 VPCFALSKNDAYLFSAS-GGVISLYIVM------TF-KTILTIMP-----PSPTATSLAFNPHDNNV------------I 860 (1093)
Q Consensus 806 v~~l~~s~dg~~la~~~-dg~i~iwd~~------~~-~~~~~~~~-----~~~~i~~l~~s~~d~~~------------l 860 (1093)
-..|+++|.+.+.++.. .+...+||.. .. ..+-.+.. .....+.+.|+. ...+ +
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPSRF 103 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCcccceeE
Confidence 45799999998777665 4889999986 11 22333332 123567777764 2222 4
Q ss_pred EEEeCCCeEEEEEcCCcce-----eeecc-cccCCeE-EEEEeCC--CCEE-EEEeCCCcEEEEeCCCCceeeeeee---
Q 001352 861 AIGMDDSTILIYNARSSEV-----ISKLE-GHSKRVT-GLVFSDA--LNIL-VSSGGDAQIFVWDVDGWGIQTCRSL--- 927 (1093)
Q Consensus 861 asg~~dg~i~iwd~~~~~~-----~~~l~-~h~~~V~-~l~~s~d--g~~l-~s~s~dg~i~iwd~~~~~~~~~~~~--- 927 (1093)
+.+++||+|.=|...-+.. ...+. ...+.|. .+++... +.+| ++--..++|.++|-.-.+....-..
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 5678999999998543221 11222 1123333 4555533 3444 4445678899997654321110000
Q ss_pred ecCCCcccCCCCceEEEEccCCCEEEE-E-------------eCCeEEEEEcCCcceeeeeec-CCCCCEEEEEEcc---
Q 001352 928 QTPDGVMTLAPSETHIQFHKDQTRFLL-V-------------HETHLAIYEAEELTCLKQWFP-ISSVPISQATFSC--- 989 (1093)
Q Consensus 928 ~~~~~~~~~~~~v~~~~~s~dg~~l~~-~-------------~d~~i~vwd~~~~~~~~~~~~-~h~~~v~~~~fs~--- 989 (1093)
..+.+... -.|. .-.+++.++ . .-|.|-+||+. |..++++.. +.-...+.|+..|
T Consensus 184 ~iPagyAP--FnIq----nig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~F 256 (336)
T TIGR03118 184 ALPAGYAP--FNVQ----NLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESF 256 (336)
T ss_pred CCCCCCCC--cceE----EECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhh
Confidence 00111110 0011 112333332 1 23579999975 666665432 2334556677754
Q ss_pred ---CCCEEEEEeCCCcEEEEEcCCCceEEEecc
Q 001352 990 ---DCRMVFTSFVDGTLSIHEASNLEVQCRILS 1019 (1093)
Q Consensus 990 ---dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~ 1019 (1093)
.|.+|+---.||+|..+|..+|+.+..+..
T Consensus 257 G~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~ 289 (336)
T TIGR03118 257 GSLSGALLVGNFGDGTINAYDPQSGAQLGQLLD 289 (336)
T ss_pred CCCCCCeEEeecCCceeEEecCCCCceeeeecC
Confidence 678888777899999999999998877774
No 437
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.68 E-value=3.4 Score=46.01 Aligned_cols=151 Identities=15% Similarity=0.064 Sum_probs=83.4
Q ss_pred CCeEEEEEcCCCCCEEEEEe-----------CCC-eEEEEEcCC--cce--eeecccccCCeEEEEEeCCCCEEEEEeCC
Q 001352 845 PTATSLAFNPHDNNVIAIGM-----------DDS-TILIYNARS--SEV--ISKLEGHSKRVTGLVFSDALNILVSSGGD 908 (1093)
Q Consensus 845 ~~i~~l~~s~~d~~~lasg~-----------~dg-~i~iwd~~~--~~~--~~~l~~h~~~V~~l~~s~dg~~l~s~s~d 908 (1093)
.....++|.+ +|+++++-. ..+ .|.+++-.+ |+. ...+.........+++.++| +++ ++..
T Consensus 14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC
Confidence 4567889998 787776542 223 677776543 332 23343333456889999998 555 4445
Q ss_pred CcEEEEeCCCCc-e--eeeeeeecCCCc-ccCCCCceEEEEccCCCEEEE-EeC-------------------CeEEEEE
Q 001352 909 AQIFVWDVDGWG-I--QTCRSLQTPDGV-MTLAPSETHIQFHKDQTRFLL-VHE-------------------THLAIYE 964 (1093)
Q Consensus 909 g~i~iwd~~~~~-~--~~~~~~~~~~~~-~~~~~~v~~~~~s~dg~~l~~-~~d-------------------~~i~vwd 964 (1093)
...++.+.+... . ....++..+... .........++|.|||.+.++ +.. +.+.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 433444554321 1 111223322221 001124778999999988776 411 3455555
Q ss_pred cCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCC
Q 001352 965 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD 1000 (1093)
Q Consensus 965 ~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~d 1000 (1093)
..+++ +..+..+ -.....++|+++|.++++-..+
T Consensus 171 pdg~~-~e~~a~G-~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 171 PDGGK-LRVVAHG-FQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred cCCCe-EEEEecC-cCCCccceECCCCCEEEEccCC
Confidence 55443 2333333 3445689999999988765433
No 438
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.61 E-value=9.3 Score=44.46 Aligned_cols=164 Identities=12% Similarity=0.140 Sum_probs=79.6
Q ss_pred CeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccce-EEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCc
Q 001352 399 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ-LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 477 (1093)
Q Consensus 399 ~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~-~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~ 477 (1093)
.+..+.||.+..+|+ ...+|+++||++.... +... .........|..+.|..+|= .+.+. +|.+.+-+-....
T Consensus 85 ~lI~mgWs~~eeLI~-v~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~~GV--avlt~--~g~v~~i~~~~~~ 158 (829)
T KOG2280|consen 85 ELIGMGWSDDEELIC-VQKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFHNGV--AVLTV--SGQVILINGVEEP 158 (829)
T ss_pred CeeeecccCCceEEE-EeccceEEEeecchhh-hcccccccccccCceeEEEEecCce--EEEec--CCcEEEEcCCCcc
Confidence 888999998776554 5699999999987532 2211 01122333566666666553 33333 3444443312221
Q ss_pred eeEEeec-CCCCeEEeeecccCC---ccEEEEEe-cCCeEEEEEcCC-CCceEEecCCCCceEEEEEccCCCEEEEEecC
Q 001352 478 RTYSFEG-HGAPVYSLCPHAKEN---IHFIFSIS-VDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 551 (1093)
Q Consensus 478 ~~~~~~~-h~~~v~~~~~~~~~~---~~~l~s~~-~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~ 551 (1093)
.+++++. ........||.-..+ ...++-.. ..+ ..++-... ......+......+..+++||+.++|+.-..
T Consensus 159 ~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~- 236 (829)
T KOG2280|consen 159 KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTE- 236 (829)
T ss_pred hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEec-
Confidence 2222221 000111112211111 11111111 000 01111111 1122233334467888999999999998765
Q ss_pred CCCceeEEEEeCCCCeeeeeee
Q 001352 552 KEGESFLVEWNESEGAIKRTYQ 573 (1093)
Q Consensus 552 ~~~~~~i~iwd~~~~~~~~~~~ 573 (1093)
.|.|.+-+....+....+.
T Consensus 237 ---~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 237 ---TGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred ---CCcEEEEecchhhhhhccC
Confidence 5557777777666665555
No 439
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.45 E-value=1.9 Score=52.03 Aligned_cols=146 Identities=8% Similarity=0.052 Sum_probs=95.1
Q ss_pred CCCeeEEEEccCCCEEEEEe--C-CeEEEEEccCceeEE-----EECCC------CCCeEEEEEcCCCCCEEEEEeCCCe
Q 001352 803 QEAVPCFALSKNDAYLFSAS--G-GVISLYIVMTFKTIL-----TIMPP------SPTATSLAFNPHDNNVIAIGMDDST 868 (1093)
Q Consensus 803 ~~~v~~l~~s~dg~~la~~~--d-g~i~iwd~~~~~~~~-----~~~~~------~~~i~~l~~s~~d~~~lasg~~dg~ 868 (1093)
...+..++..+|+...++.. + -.|..||+.+...-. .+..| .....++.|.|.=-...|+...|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 44566777788877666654 3 358899987543221 12211 2344677788743445566778999
Q ss_pred EEEEEcCCcc-eeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEcc
Q 001352 869 ILIYNARSSE-VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK 947 (1093)
Q Consensus 869 i~iwd~~~~~-~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 947 (1093)
|++..+.-.. .+..+. -...+++++|||.|+.++.|-..|++.-|........ .+..+.... ..+|.+++|-.
T Consensus 180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~---~ip~Pp~~e--~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKS---EIPEPPVEE--NYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccceee---cccCCCcCC--CcceeEEEEec
Confidence 9988775432 223333 4567899999999999999999999998876653211 222222222 24799999999
Q ss_pred CCCEEEE
Q 001352 948 DQTRFLL 954 (1093)
Q Consensus 948 dg~~l~~ 954 (1093)
.-.++++
T Consensus 254 t~eflvv 260 (1405)
T KOG3630|consen 254 TQEFLVV 260 (1405)
T ss_pred ceeEEEE
Confidence 9888887
No 440
>PHA02790 Kelch-like protein; Provisional
Probab=92.43 E-value=5.7 Score=46.14 Aligned_cols=184 Identities=11% Similarity=-0.008 Sum_probs=92.8
Q ss_pred CCCEEEEEe-C-----CeEEEEEccCceeEE--EECCCCCCeEEEEEcCCCCCEEEEEeCCC--eEEEEEcCCcc--eee
Q 001352 814 NDAYLFSAS-G-----GVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSE--VIS 881 (1093)
Q Consensus 814 dg~~la~~~-d-----g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~lasg~~dg--~i~iwd~~~~~--~~~ 881 (1093)
++.++++|+ + ..+..||..+.+-.. .+.........++ - ++.+.++|+.++ .+..||..+++ .+.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--A-NNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--E-CCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 455556654 2 246778877654322 2221111222222 3 677888888643 68888876543 222
Q ss_pred ecccccCCeEEEEEeCCCCEEEEEeCCC---cEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCC
Q 001352 882 KLEGHSKRVTGLVFSDALNILVSSGGDA---QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET 958 (1093)
Q Consensus 882 ~l~~h~~~V~~l~~s~dg~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~ 958 (1093)
.+.........+ .-+|+..+.||.++ .+..||..+++-.....+..+ .....+..-+|++.+.| |
T Consensus 348 ~l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~--------r~~~~~~~~~~~IYv~G--G 415 (480)
T PHA02790 348 SLLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYP--------HYKSCALVFGRRLFLVG--R 415 (480)
T ss_pred CCCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCc--------cccceEEEECCEEEEEC--C
Confidence 332111111222 23678888888654 467888876543221111111 11122334566666665 4
Q ss_pred eEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEEcCCCce
Q 001352 959 HLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEV 1013 (1093)
Q Consensus 959 ~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~d-----g~v~vwd~~~~~~ 1013 (1093)
.+.+||..+++-...-...+...-.++ ..-+|+..+.||.+ .+|..||..+++.
T Consensus 416 ~~e~ydp~~~~W~~~~~m~~~r~~~~~-~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 416 NAEFYCESSNTWTLIDDPIYPRDNPEL-IIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSW 474 (480)
T ss_pred ceEEecCCCCcEeEcCCCCCCccccEE-EEECCEEEEECCcCCCcccceEEEEECCCCeE
Confidence 577899877654322111111111122 23477888888764 3466677666543
No 441
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=92.36 E-value=14 Score=39.23 Aligned_cols=167 Identities=11% Similarity=0.078 Sum_probs=90.5
Q ss_pred cEEEEECCCCceeEEeecC------CCCeEEeeecccCC----ccEEEEEecCCeEEEEEcCCCCceEEecCCC------
Q 001352 467 TIKVWDAVTGSRTYSFEGH------GAPVYSLCPHAKEN----IHFIFSISVDGKIKAWLYDSLGARVDYDAPG------ 530 (1093)
Q Consensus 467 ~i~vwd~~~~~~~~~~~~h------~~~v~~~~~~~~~~----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~------ 530 (1093)
.|.+||+.+++.++++.-. .+.+..+.+...+. +...++-+..+.|.|+|+.+++.........
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 5888999999988876432 34566777755332 2334444455689999998876655433211
Q ss_pred -------------CceEEEEEcc---CCCEEEEEecCCCCceeEEEEeCCCC-----ee---------eeeeecccccCC
Q 001352 531 -------------LGCTRMAYSA---NGRRLFSCGTSKEGESFLVEWNESEG-----AI---------KRTYQGLQLQHN 580 (1093)
Q Consensus 531 -------------~~v~~~~~s~---d~~~l~~~~~~~~~~~~i~iwd~~~~-----~~---------~~~~~~~~~~~~ 580 (1093)
..+..++.+| +++.|+.....+ -.+|.+.+. .. ++.+ +.. ..
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-----~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k--~~ 186 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-----RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDK--GS 186 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT------SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE-----
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-----CcEEEEEHHHhhCccccccccccccceec-ccc--CC
Confidence 1245566654 666666554322 122322211 00 1111 111 13
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---eEEEEec-CCCCCCCceEEEec--CCCEEEEE
Q 001352 581 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ---LLTTIDA-GGGLPENPRICFNK--NGTLLAVI 641 (1093)
Q Consensus 581 ~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~-~~~~~~v~~v~~s~--~~~~l~~~ 641 (1093)
....++++++|..+++--..+.|..|+..+.- ....+.. ......+..+.+.+ +|.+.+..
T Consensus 187 ~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 187 QSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 55678889988888888899999999987621 2222222 22234456777777 55544443
No 442
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=92.26 E-value=24 Score=39.92 Aligned_cols=272 Identities=16% Similarity=0.097 Sum_probs=136.7
Q ss_pred CceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEE
Q 001352 337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 416 (1093)
Q Consensus 337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~ 416 (1093)
.|.++.+.-.|. +-.|+.|| +..+|..+|+.+.... .....+|.++.-+-.| .|.+|+
T Consensus 166 ~V~aLv~D~~g~--lWvgT~dG-L~~fd~~~gkalql~s------------------~~~dk~I~al~~d~qg-~LWVGT 223 (671)
T COG3292 166 PVVALVFDANGR--LWVGTPDG-LSYFDAGRGKALQLAS------------------PPLDKAINALIADVQG-RLWVGT 223 (671)
T ss_pred cceeeeeeccCc--EEEecCCc-ceEEccccceEEEcCC------------------CcchhhHHHHHHHhcC-cEEEEe
Confidence 889999999997 45566666 6677888877665311 0111455555544444 566777
Q ss_pred cCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEe-ecCC--CCeEEee
Q 001352 417 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHG--APVYSLC 493 (1093)
Q Consensus 417 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-~~h~--~~v~~~~ 493 (1093)
.+| |.+.+.++.+.... -..-..+.|..+.=..+|. +-.|+..|..+. ....+...... +-|. ..|.++.
T Consensus 224 dqG-v~~~e~~G~~~sn~--~~~lp~~~I~ll~qD~qG~---lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~vnsL~ 296 (671)
T COG3292 224 DQG-VYLQEAEGWRASNW--GPMLPSGNILLLVQDAQGE---LWIGTENGLWRT-RLPRQGLQIPLSKMHLGVSTVNSLW 296 (671)
T ss_pred ccc-eEEEchhhcccccc--CCCCcchheeeeecccCCC---EEEeecccceeE-ecCCCCccccccccCCcccccccee
Confidence 787 88887776321110 0111233455554444454 455555553322 33333322222 2121 2233333
Q ss_pred ecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEcc--CCCEEEEEecCCCCceeEEEEeCCCCeeeee
Q 001352 494 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA--NGRRLFSCGTSKEGESFLVEWNESEGAIKRT 571 (1093)
Q Consensus 494 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~--d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 571 (1093)
. +.+| -+-+++.+|.+++-+-+-..........+..+...+..| .+..+-.... .+.+.+-+..+|..++.
T Consensus 297 ~--D~dG-sLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns----~g~L~van~stG~~v~s 369 (671)
T COG3292 297 L--DTDG-SLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNS----IGELMVANGSTGELVRS 369 (671)
T ss_pred e--ccCC-CEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeeccc----cceEEEecCCCCcEEEE
Confidence 3 3333 466677777666543221111111111111121222222 1111111111 23355666677777666
Q ss_pred eecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEE
Q 001352 572 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 649 (1093)
Q Consensus 572 ~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 649 (1093)
..... ...|+.+++.. +..+-.|+...-+..|+.++ +........ -..++|..+.=.|+++ |..|+.+|-++.
T Consensus 370 v~q~R--g~nit~~~~d~-~g~lWlgs~q~GLsrl~n~n~~avlde~ag-l~ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 370 VHQLR--GMNITTTLEDS-RGRLWLGSMQNGLSRLDNKNEWAVLDEDAG-LPSSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred eeecc--ccccchhhhcc-CCcEEEEecccchhhhccCCcccccccccC-CcccceeeeeecCCCC-EEEeccCCeEec
Confidence 44333 35677777776 44566677665577777766 333333222 2234577777778887 788888776554
No 443
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.07 E-value=8.2 Score=37.36 Aligned_cols=102 Identities=16% Similarity=0.115 Sum_probs=62.2
Q ss_pred CCCEEEEEe---CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCe
Q 001352 814 NDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV 890 (1093)
Q Consensus 814 dg~~la~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V 890 (1093)
+|+++.+.+ ...|++||+.+|+.+..-.-....+..=-...-+..+.+-...+|.-..+|.++.+++.++. ..+.=
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc
Confidence 556666665 36699999999988776543322221111111023444556778999999999988887665 33444
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 001352 891 TGLVFSDALNILVSSGGDAQIFVWDVDG 918 (1093)
Q Consensus 891 ~~l~~s~dg~~l~s~s~dg~i~iwd~~~ 918 (1093)
+.++ .|++.|..++...+++.-|-++
T Consensus 134 WgLt--~d~~~LimsdGsatL~frdP~t 159 (262)
T COG3823 134 WGLT--SDDKNLIMSDGSATLQFRDPKT 159 (262)
T ss_pred eeee--cCCcceEeeCCceEEEecCHHH
Confidence 4444 3666677666566666666554
No 444
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.05 E-value=0.14 Score=59.33 Aligned_cols=140 Identities=14% Similarity=0.083 Sum_probs=80.9
Q ss_pred CCeEEEEEcCCcc-eeeecccccCCeEEEEEeCC-CCEEEEEeCCCcEEEEeCCC--CceeeeeeeecCCCcccCCCCce
Q 001352 866 DSTILIYNARSSE-VISKLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDG--WGIQTCRSLQTPDGVMTLAPSET 941 (1093)
Q Consensus 866 dg~i~iwd~~~~~-~~~~l~~h~~~V~~l~~s~d-g~~l~s~s~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~ 941 (1093)
.+.+++-+..+.. ....++|..+.|-.+.|-.. ...++ -.-|.+.||+++- |++.....+............|.
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~ 187 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS 187 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence 3456666655432 22345667778888888431 11122 3346689998874 44333333333222222113444
Q ss_pred EEEEccCCCEEEEE-eCCeEEEEEcCCcceeeeeecCCCCCEEEEE-----------EccCCCEEEEEeCCCcEEEEEcC
Q 001352 942 HIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQAT-----------FSCDCRMVFTSFVDGTLSIHEAS 1009 (1093)
Q Consensus 942 ~~~~s~dg~~l~~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~-----------fs~dg~~l~t~~~dg~v~vwd~~ 1009 (1093)
-+-|-++..++..+ .++.+++....+... .++.+|+.++..++ .||||+.++++..||.++.|.+.
T Consensus 188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 188 WCPIAVNKVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred ecccccccceeeeccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 55555666666665 445666655543322 33445766666654 48999999999999999999764
No 445
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=91.96 E-value=22 Score=39.71 Aligned_cols=201 Identities=12% Similarity=0.016 Sum_probs=104.5
Q ss_pred EccCCCEEEEEeCCeEEEEEccCceeEEEECCCC--CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeeccccc-
Q 001352 811 LSKNDAYLFSASGGVISLYIVMTFKTILTIMPPS--PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS- 887 (1093)
Q Consensus 811 ~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~--~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~- 887 (1093)
...||+.++...+|.|.-.|..+++.+....... ..+..-.+.. +|+ |+.++.+|.++.+|..+|+.+.......
T Consensus 65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~ 142 (370)
T COG1520 65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGS 142 (370)
T ss_pred EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCCC
Confidence 3446776666667888888888887665443221 2333333333 565 6678889999999998899887776554
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEe--CCeEEEEEc
Q 001352 888 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH--ETHLAIYEA 965 (1093)
Q Consensus 888 ~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~--d~~i~vwd~ 965 (1093)
-.+..-..-.++..++ .+.++.+.-.+-.+++..-....... -.. .+..-....++...+... ++.+.-.|.
T Consensus 143 ~~~~~~~v~~~~~v~~-~s~~g~~~al~~~tG~~~W~~~~~~~-~~~----~~~~~~~~~~~~vy~~~~~~~~~~~a~~~ 216 (370)
T COG1520 143 PYYASPPVVGDGTVYV-GTDDGHLYALNADTGTLKWTYETPAP-LSL----SIYGSPAIASGTVYVGSDGYDGILYALNA 216 (370)
T ss_pred eEEecCcEEcCcEEEE-ecCCCeEEEEEccCCcEEEEEecCCc-ccc----ccccCceeecceEEEecCCCcceEEEEEc
Confidence 1122222222332222 22556666666665543221111110 000 011111133344333333 445666677
Q ss_pred CCcceeeeeecCCCCC---EEEEEEcc-----CCCEEEEEeCCCcEEEEEcCCCceEEEecc
Q 001352 966 EELTCLKQWFPISSVP---ISQATFSC-----DCRMVFTSFVDGTLSIHEASNLEVQCRILS 1019 (1093)
Q Consensus 966 ~~~~~~~~~~~~h~~~---v~~~~fs~-----dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~ 1019 (1093)
.+|...-.....+... +....... .+.-+..++.++.+.-.+..+|+.+.++..
T Consensus 217 ~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 217 EDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred cCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 7777665522111111 10011111 112235566778788889999999888774
No 446
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.91 E-value=0.32 Score=56.50 Aligned_cols=165 Identities=16% Similarity=0.145 Sum_probs=91.3
Q ss_pred CCCCeeEEEEccCC-CEEEEEeC-CeEEEEEcc--CceeEEE-----ECCCCCCeEEEEEcCC--CCCEEEEEeCCCeEE
Q 001352 802 SQEAVPCFALSKND-AYLFSASG-GVISLYIVM--TFKTILT-----IMPPSPTATSLAFNPH--DNNVIAIGMDDSTIL 870 (1093)
Q Consensus 802 ~~~~v~~l~~s~dg-~~la~~~d-g~i~iwd~~--~~~~~~~-----~~~~~~~i~~l~~s~~--d~~~lasg~~dg~i~ 870 (1093)
..+.+..+.|..-. ..++ .+ |.+.|||+. .|+.... .......+.-+.|.|. +..++..+..+++|+
T Consensus 131 f~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~ 208 (1283)
T KOG1916|consen 131 FPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIR 208 (1283)
T ss_pred CCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCcee
Confidence 44555556654321 1111 22 678888875 3443322 2223334444555441 456777888889998
Q ss_pred EEEcCCcceeeecccccCCeEEEE-----------EeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCC
Q 001352 871 IYNARSSEVISKLEGHSKRVTGLV-----------FSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPS 939 (1093)
Q Consensus 871 iwd~~~~~~~~~l~~h~~~V~~l~-----------~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 939 (1093)
+.+..+... ..+.+|+..++.++ .||||+.+|.++.||.++.|.+.--.....+++..-..|.. .+
T Consensus 209 lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~--~p 285 (1283)
T KOG1916|consen 209 LLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK--HP 285 (1283)
T ss_pred EeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC--CC
Confidence 877664332 45566877766654 58999999999999999999875322222233333333332 12
Q ss_pred ceEEEEccCC-------C--EEEEEeC--CeEEEEEcCCccee
Q 001352 940 ETHIQFHKDQ-------T--RFLLVHE--THLAIYEAEELTCL 971 (1093)
Q Consensus 940 v~~~~~s~dg-------~--~l~~~~d--~~i~vwd~~~~~~~ 971 (1093)
-.|.-|...- . +++++.| ..+++|.....+|+
T Consensus 286 ~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 286 RVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred ceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 2222233221 1 2233333 45888887776665
No 447
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=91.84 E-value=22 Score=38.73 Aligned_cols=164 Identities=12% Similarity=0.089 Sum_probs=89.6
Q ss_pred CCCeEEEEEcCCCCCEEEEEeCCCe------EEEEEcCC--c--ce-----eeecccccC--------CeEEEEEeCCCC
Q 001352 844 SPTATSLAFNPHDNNVIAIGMDDST------ILIYNARS--S--EV-----ISKLEGHSK--------RVTGLVFSDALN 900 (1093)
Q Consensus 844 ~~~i~~l~~s~~d~~~lasg~~dg~------i~iwd~~~--~--~~-----~~~l~~h~~--------~V~~l~~s~dg~ 900 (1093)
-+.+..+++.+++++ +++.+.+|. +..+++.. + .. ...+..-.+ ..-+|++.++|.
T Consensus 19 ~GGlSgl~~~~~~~~-~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGR-FYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCCE-EEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 356788888863454 444566666 65555543 1 00 111111111 344788888888
Q ss_pred EEEEEeCC------CcEEEEeCCCCceeeeeeeecCC-------CcccCCCCceEEEEccCCCEEEEE------eCC---
Q 001352 901 ILVSSGGD------AQIFVWDVDGWGIQTCRSLQTPD-------GVMTLAPSETHIQFHKDQTRFLLV------HET--- 958 (1093)
Q Consensus 901 ~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~s~dg~~l~~~------~d~--- 958 (1093)
++++.=.+ ..|..++.+ +.......+...- ..........+++++|||+.|.+. .|+
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 88887666 778888876 3332211111100 112223578999999999955442 222
Q ss_pred --------eEEEEEcCC-cceeeee--ecC------CCCCEEEEEEccCCCEEEEEe-----CCCcEEEEEcC
Q 001352 959 --------HLAIYEAEE-LTCLKQW--FPI------SSVPISQATFSCDCRMVFTSF-----VDGTLSIHEAS 1009 (1093)
Q Consensus 959 --------~i~vwd~~~-~~~~~~~--~~~------h~~~v~~~~fs~dg~~l~t~~-----~dg~v~vwd~~ 1009 (1093)
.|..||..+ +.....+ ... ....|+.+.+-+|+++|+.-= ....++|+.+.
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 234455554 3222221 111 356889999999999877321 23455665554
No 448
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=91.74 E-value=28 Score=39.63 Aligned_cols=58 Identities=12% Similarity=0.066 Sum_probs=42.3
Q ss_pred EEEEccCCCEEEEEeC--CeEEEEEcCCcc--eeeeeecCCCCCEEEEEEccCCCEEEEEeC
Q 001352 942 HIQFHKDQTRFLLVHE--THLAIYEAEELT--CLKQWFPISSVPISQATFSCDCRMVFTSFV 999 (1093)
Q Consensus 942 ~~~~s~dg~~l~~~~d--~~i~vwd~~~~~--~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~ 999 (1093)
-+||.|....+|++++ +.|.||.+.... .+.++......+...++|-.|+-+|+..|.
T Consensus 343 liAfn~kaq~VAVASNTcn~ilVYSv~~s~mPniQqIqLe~~ERPKGiCFltdklLLilVGk 404 (671)
T PF15390_consen 343 LIAFNPKAQVVAVASNTCNIILVYSVTPSSMPNIQQIQLESNERPKGICFLTDKLLLILVGK 404 (671)
T ss_pred eeeeCCcCCEEEEEecCCcEEEEEEeccccCCCeeEEEcccCCCCceeeEccCCeEEEEecc
Confidence 4799999999999654 579999986432 233333344678889999999887776664
No 449
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=91.49 E-value=11 Score=37.23 Aligned_cols=111 Identities=12% Similarity=0.190 Sum_probs=67.6
Q ss_pred eeEEEEccCCCEEEEEeCCeEEEEEcc--CceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCC------eEEEE---Ec
Q 001352 806 VPCFALSKNDAYLFSASGGVISLYIVM--TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS------TILIY---NA 874 (1093)
Q Consensus 806 v~~l~~s~dg~~la~~~dg~i~iwd~~--~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg------~i~iw---d~ 874 (1093)
...++-++.+.++++++...|.+|++. ..+...+|.. -+.|..++++. .|++|+|--.+. .+|+| ..
T Consensus 20 P~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~ 97 (215)
T PF14761_consen 20 PTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRS 97 (215)
T ss_pred cceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhh
Confidence 344555554555565677889999988 3455666663 37899999999 899999854332 45554 33
Q ss_pred C--Cccee-eecccc---------------------cCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q 001352 875 R--SSEVI-SKLEGH---------------------SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 919 (1093)
Q Consensus 875 ~--~~~~~-~~l~~h---------------------~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~ 919 (1093)
. ..+.+ .++.|| +.++.+++-.|-..-|+.|+ ++.+.+|.+...
T Consensus 98 ~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 98 QKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQ 165 (215)
T ss_pred hcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEE
Confidence 2 11111 122232 23566677666444444444 456999988763
No 450
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=91.41 E-value=20 Score=37.32 Aligned_cols=214 Identities=12% Similarity=0.128 Sum_probs=121.2
Q ss_pred cEEEEEeeCCCCcEEEEEEcCCCcEEEEECC------CC-ceeEEeec-----CCCCeEEeeecccC------Cc----c
Q 001352 444 NVNDLAFSAPCKQISVITCGDDKTIKVWDAV------TG-SRTYSFEG-----HGAPVYSLCPHAKE------NI----H 501 (1093)
Q Consensus 444 ~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~------~~-~~~~~~~~-----h~~~v~~~~~~~~~------~~----~ 501 (1093)
.-+-++|+|.+. +-++...-+...+||.. .. ..+-++.. .....+.+.|+... ++ .
T Consensus 24 N~WGia~~p~~~--~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGGP--FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCCC--EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 457899999887 56666677889999976 12 22333332 12345555554221 11 2
Q ss_pred EEEEEecCCeEEEEEcCCCCc-----eEEecCC--CCceEEEEEcc--CCCEEEEEecCCCCceeEEEEeCCCCeee--e
Q 001352 502 FIFSISVDGKIKAWLYDSLGA-----RVDYDAP--GLGCTRMAYSA--NGRRLFSCGTSKEGESFLVEWNESEGAIK--R 570 (1093)
Q Consensus 502 ~l~s~~~dg~i~vwd~~~~~~-----~~~~~~~--~~~v~~~~~s~--d~~~l~~~~~~~~~~~~i~iwd~~~~~~~--~ 570 (1093)
.++.+++||+|.-|...-... ...+... ..-...+++.. .+.+|+.+-. ..++|.++|-.=.... .
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF---~~g~IDVFd~~f~~~~~~g 178 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF---RQGRIDVFKGSFRPPPLPG 178 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc---CCCceEEecCccccccCCC
Confidence 468889999999997532222 1222211 22334555543 3566666543 2566888875422211 0
Q ss_pred eeeccccc--CCC-----------eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEec----
Q 001352 571 TYQGLQLQ--HNS-----------VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK---- 633 (1093)
Q Consensus 571 ~~~~~~~~--~~~-----------v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~---- 633 (1093)
.+...... -.+ |+...-.++...=+.|..-|.|-+||. .|.+++++...+....-+.++..|
T Consensus 179 ~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 179 SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred CccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhC
Confidence 11111000 000 111111222222233445578999997 578888886655555566777755
Q ss_pred --CCCEEEEEECCCeEEEEEcCCCceeeeccc
Q 001352 634 --NGTLLAVIANENRIKILETPESNSVDAAGV 663 (1093)
Q Consensus 634 --~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 663 (1093)
.|.+|+---.||+|..+|..+++.+..+..
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~ 289 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQSGAQLGQLLD 289 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCCCceeeeecC
Confidence 467777777799999999998887766664
No 451
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=91.28 E-value=28 Score=38.84 Aligned_cols=150 Identities=9% Similarity=-0.007 Sum_probs=83.1
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcc
Q 001352 890 VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELT 969 (1093)
Q Consensus 890 V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~ 969 (1093)
...+..++||.+++.+..-..++-||-.... ...+..... ..++++.|.+++.+++++..|.+.. ....+.
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~---W~~~~~~~~-----~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~ 311 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPY---WQPHNRASA-----RRIQNMGWRADGGLWLLTRGGGLYV-SKGTGL 311 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcc---eEEecCCCc-----cceeeeeEcCCCCEEEEeCCceEEE-ecCCCC
Confidence 4445677888777765544333334433210 011222211 2588999999999999887777544 334443
Q ss_pred -----eeeeeecC-CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCC
Q 001352 970 -----CLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLK 1043 (1093)
Q Consensus 970 -----~~~~~~~~-h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d 1043 (1093)
........ ....+.++.|.+|+..+++ +..|.+... .+.|+.-.+.......+. .++ .+.|.+
T Consensus 312 ~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s-~D~G~tW~~~~~~~~~~~-----~ly--~v~f~~-- 380 (398)
T PLN00033 312 TEEDFDFEEADIKSRGFGILDVGYRSKKEAWAA-GGSGILLRS-TDGGKSWKRDKGADNIAA-----NLY--SVKFFD-- 380 (398)
T ss_pred cccccceeecccCCCCcceEEEEEcCCCcEEEE-ECCCcEEEe-CCCCcceeEccccCCCCc-----cee--EEEEcC--
Confidence 12211111 1245889999988876665 567866554 455554333321111122 244 566664
Q ss_pred CCEEEEEeCCCcEEEE
Q 001352 1044 PTQFAVGLTNGEVYVI 1059 (1093)
Q Consensus 1044 ~~~l~~~~~dg~v~~w 1059 (1093)
.+...+.+.+|.|.-|
T Consensus 381 ~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 381 DKKGFVLGNDGVLLRY 396 (398)
T ss_pred CCceEEEeCCcEEEEe
Confidence 3567777788887655
No 452
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=91.24 E-value=8.3 Score=34.70 Aligned_cols=122 Identities=13% Similarity=0.051 Sum_probs=69.1
Q ss_pred eeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC-----CCCEEEE
Q 001352 340 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-----DGSLLGV 414 (1093)
Q Consensus 340 ~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~-----dg~~las 414 (1093)
.-.|..... -|++++.-|+|.|.+.......... + ..... +-.-...|++++-.+ +...|+.
T Consensus 3 iGkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~----~-----~~~i~---~LNin~~italaaG~l~~~~~~D~Lli 69 (136)
T PF14781_consen 3 IGKFDGVHP-CLACATTGGKVFIHNPHERGQRTGR----Q-----DSDIS---FLNINQEITALAAGRLKPDDGRDCLLI 69 (136)
T ss_pred EEEeCCCce-eEEEEecCCEEEEECCCcccccccc----c-----cCcee---EEECCCceEEEEEEecCCCCCcCEEEE
Confidence 345555555 3777788899999998654322110 0 00000 112346777776433 3456777
Q ss_pred EEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCC---CCcEEEEEEcCCCcEEEEECCCCceeEE
Q 001352 415 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCGDDKTIKVWDAVTGSRTYS 481 (1093)
Q Consensus 415 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d---~~~l~l~s~~~d~~i~vwd~~~~~~~~~ 481 (1093)
|+.. .+..||++....+. .+.-.+.|.++.+-.- ... +++.| .+..|.-+|.+..+...+
T Consensus 70 Gt~t-~llaYDV~~N~d~F----yke~~DGvn~i~~g~~~~~~~~-l~ivG-Gncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 70 GTQT-SLLAYDVENNSDLF----YKEVPDGVNAIVIGKLGDIPSP-LVIVG-GNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred eccc-eEEEEEcccCchhh----hhhCccceeEEEEEecCCCCCc-EEEEC-ceEEEEEeCCCCcEEEEE
Confidence 7655 59999999876543 2344566777777321 121 44444 477888888554444333
No 453
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=91.15 E-value=5.8 Score=46.81 Aligned_cols=173 Identities=13% Similarity=0.116 Sum_probs=91.7
Q ss_pred CCEEEEEeCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEE
Q 001352 815 DAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLV 894 (1093)
Q Consensus 815 g~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~ 894 (1093)
+.+++++..+.|.||+........ ...+...+...| .+ +...|+.+..|. ..|. |..|.
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p----~~~p~~~~~t~p---~~--~~~~D~~~s~~p----------~PHt--IN~i~ 107 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLP----SRKPCLRFDTKP---EF--TSTPDRLISTWP----------FPHT--INFIK 107 (717)
T ss_pred CCEEEEEECCEEEEEecCCccccc----ccccccccccCc---cc--cccccccccCCC----------CCce--eeEEE
Confidence 788888999999999986432211 011112222222 11 122233232222 1121 22222
Q ss_pred Ee--CCCCEEEEEeCCCcEEEEeCCCCc-----e----e--eeeeeecCCCcccCCCCceEEEEc--cCCCEEEEEeCC-
Q 001352 895 FS--DALNILVSSGGDAQIFVWDVDGWG-----I----Q--TCRSLQTPDGVMTLAPSETHIQFH--KDQTRFLLVHET- 958 (1093)
Q Consensus 895 ~s--~dg~~l~s~s~dg~i~iwd~~~~~-----~----~--~~~~~~~~~~~~~~~~~v~~~~~s--~dg~~l~~~~d~- 958 (1093)
.. -+...|+.+.+||.|.+|.++.=. . . ..+..-.+.-+......++++++. ...++||+++++
T Consensus 108 v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~ 187 (717)
T PF08728_consen 108 VGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQ 187 (717)
T ss_pred ecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCc
Confidence 22 244677778888888888653200 0 0 000000011111122468899998 888999997554
Q ss_pred eEEEEEcCC--cceeeeeecCCCCCEEEEEEccCC---C---EEEEEeCCCcEEEEEc
Q 001352 959 HLAIYEAEE--LTCLKQWFPISSVPISQATFSCDC---R---MVFTSFVDGTLSIHEA 1008 (1093)
Q Consensus 959 ~i~vwd~~~--~~~~~~~~~~h~~~v~~~~fs~dg---~---~l~t~~~dg~v~vwd~ 1008 (1093)
.|.||-... .+....-...|...|-+|.|-++. . +|++++-.|.+.+|++
T Consensus 188 ~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 188 EVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 566654433 222111111256688899997743 2 7888999999999888
No 454
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.12 E-value=1.1 Score=48.15 Aligned_cols=122 Identities=11% Similarity=0.153 Sum_probs=82.4
Q ss_pred CCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEE
Q 001352 335 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 414 (1093)
Q Consensus 335 ~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las 414 (1093)
.++|.++.||+|.+ ++|+--.+++|.+.+....+.......+ .+..+..|....|+.+ .-+|.
T Consensus 66 ~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~~~---------------ck~k~~~IlGF~W~~s-~e~A~ 128 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYTQE---------------CKTKNANILGFCWTSS-TEIAF 128 (657)
T ss_pred CCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHHHH---------------hccCcceeEEEEEecC-eeEEE
Confidence 45999999999998 6999989999999998544333211110 1223456888999866 77777
Q ss_pred EEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCC
Q 001352 415 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 476 (1093)
Q Consensus 415 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~ 476 (1093)
.+..| +-+|-+...+ +.....+.|...|..-.|.++.+-.+|+|+-..+++.=+-+.++
T Consensus 129 i~~~G-~e~y~v~pek--rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 129 ITDQG-IEFYQVLPEK--RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred EecCC-eEEEEEchhh--hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 77777 7888776543 22334567889999999999988544444434444444444444
No 455
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=90.96 E-value=32 Score=38.92 Aligned_cols=72 Identities=14% Similarity=0.147 Sum_probs=48.5
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCC
Q 001352 396 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 475 (1093)
Q Consensus 396 h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~ 475 (1093)
...+|.++.+...|. |-+|+.|| +..||..+++.+.. .......+|..+.-+-.|+ +..|+.+| |.+.+.+.
T Consensus 163 ~d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql--~s~~~dk~I~al~~d~qg~---LWVGTdqG-v~~~e~~G 234 (671)
T COG3292 163 KDTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQL--ASPPLDKAINALIADVQGR---LWVGTDQG-VYLQEAEG 234 (671)
T ss_pred cCccceeeeeeccCc-EEEecCCc-ceEEccccceEEEc--CCCcchhhHHHHHHHhcCc---EEEEeccc-eEEEchhh
Confidence 346788899988885 45677888 88888888764432 1122335677777777776 67777665 77777554
No 456
>PHA02790 Kelch-like protein; Provisional
Probab=90.96 E-value=9.2 Score=44.41 Aligned_cols=148 Identities=9% Similarity=-0.026 Sum_probs=71.8
Q ss_pred CccEEEEEecC--CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeeccc
Q 001352 499 NIHFIFSISVD--GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 576 (1093)
Q Consensus 499 ~~~~l~s~~~d--g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 576 (1093)
++.+.+.|+.+ ..+..||..+..-...-..+.......+..-+|+..+.|+.+.. ...+..||..+.+-...-.-..
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~-~~~ve~ydp~~~~W~~~~~m~~ 396 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET-DTTTEYLLPNHDQWQFGPSTYY 396 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCC-CccEEEEeCCCCEEEeCCCCCC
Confidence 44566666654 35777776543221111111111122223346776677665332 3557889988765543211111
Q ss_pred ccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECC-----CeEEEEE
Q 001352 577 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-----NRIKILE 651 (1093)
Q Consensus 577 ~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iw~ 651 (1093)
.......+. -++...+.| |.+.+||..+++....-+..... ...-+.--+|+..++|+.+ ..+..||
T Consensus 397 -~r~~~~~~~--~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r--~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd 468 (480)
T PHA02790 397 -PHYKSCALV--FGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPR--DNPELIIVDNKLLLIGGFYRGSYIDTIEVYN 468 (480)
T ss_pred -ccccceEEE--ECCEEEEEC---CceEEecCCCCcEeEcCCCCCCc--cccEEEEECCEEEEECCcCCCcccceEEEEE
Confidence 001112222 234444445 35778999887765443322211 1122223367777777754 3466677
Q ss_pred cCCC
Q 001352 652 TPES 655 (1093)
Q Consensus 652 ~~~~ 655 (1093)
..++
T Consensus 469 ~~~~ 472 (480)
T PHA02790 469 NRTY 472 (480)
T ss_pred CCCC
Confidence 6654
No 457
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.75 E-value=15 Score=45.79 Aligned_cols=160 Identities=16% Similarity=0.205 Sum_probs=98.7
Q ss_pred EEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEE--------eCCCCEEEEEeCCCcEEEEeCCCCc
Q 001352 849 SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF--------SDALNILVSSGGDAQIFVWDVDGWG 920 (1093)
Q Consensus 849 ~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~--------s~dg~~l~s~s~dg~i~iwd~~~~~ 920 (1093)
.+-+-|.=++.-+ +.|+.+.+|+..++.....+.+-+..|..+.. -|.=++++..+.--.|.|+-+.-.+
T Consensus 83 ~mGiFpeI~RaWi--TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~ 160 (1311)
T KOG1900|consen 83 DMGIFPEIGRAWI--TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDE 160 (1311)
T ss_pred eeccchhhcceEE--EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEecc
Confidence 3334442344443 35788999999998877888777777776654 2333555555555667777665433
Q ss_pred eeeeeeeecCC-CcccCCCCceEEEEccCCCEEEEEeCCeEE--EEEcCCc---c-ee----------------eeeecC
Q 001352 921 IQTCRSLQTPD-GVMTLAPSETHIQFHKDQTRFLLVHETHLA--IYEAEEL---T-CL----------------KQWFPI 977 (1093)
Q Consensus 921 ~~~~~~~~~~~-~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~--vwd~~~~---~-~~----------------~~~~~~ 977 (1093)
.......-... .....+..|.++....+|+.+.+|.||.|+ +|...+| + |. .++...
T Consensus 161 ~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~ 240 (1311)
T KOG1900|consen 161 FTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGS 240 (1311)
T ss_pred ccCcccccccceeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCC
Confidence 22211100000 000111358889989999999999998443 2222222 1 10 111224
Q ss_pred CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 001352 978 SSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1010 (1093)
Q Consensus 978 h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~ 1010 (1093)
+..+|..++....-..|.+-++.|+|++|++..
T Consensus 241 ~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 241 SKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 567999999988888899999999999999988
No 458
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.60 E-value=5.9 Score=49.11 Aligned_cols=172 Identities=13% Similarity=0.185 Sum_probs=102.3
Q ss_pred ccCCchHHHHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCC
Q 001352 319 SFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 398 (1093)
Q Consensus 319 ~~~~~p~~~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 398 (1093)
.+..+|...+..+. |...=..+-+-|.=.+ |--+.|+.+.+|+.+++..... +.+-+.
T Consensus 63 ~v~~IP~el~eq~~-~~~~~~~mGiFpeI~R--aWiTiDn~L~lWny~~~~e~~~-------------------~d~~sh 120 (1311)
T KOG1900|consen 63 QVVNIPDELLEQFS-NIECKTDMGIFPEIGR--AWITIDNNLFLWNYESDNELAE-------------------YDGLSH 120 (1311)
T ss_pred ccccCCHHHHHHhc-Ccceeeeeccchhhcc--eEEEeCCeEEEEEcCCCCcccc-------------------ccchhh
Confidence 44677888777776 4433444444454333 3335789999999999765543 334444
Q ss_pred CeEEEE--------ECCCCCEEEEEEcCCEEEEEEccCCCcccce------EEeccccccEEEEEeeCCCCcEEEEEEcC
Q 001352 399 SVNRVV--------WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ------LEIDAHVGNVNDLAFSAPCKQISVITCGD 464 (1093)
Q Consensus 399 ~V~~v~--------~s~dg~~las~~~d~~i~iwd~~~~~~~~~~------~~~~~h~~~v~~~~~s~d~~~l~l~s~~~ 464 (1093)
.|..|. |-|.=++|.+...--.|.++-+.-.+..... ..+.-..-.|+|+....+|+ ++-+|.
T Consensus 121 tIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR---IF~~G~ 197 (1311)
T KOG1900|consen 121 TILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR---IFFAGR 197 (1311)
T ss_pred hheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc---EEEeec
Confidence 555554 3444456555555555777765433221111 12222355789999888888 444555
Q ss_pred CCcEEEEEC----CCC----ce----------------eEEee-cCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCC
Q 001352 465 DKTIKVWDA----VTG----SR----------------TYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 519 (1093)
Q Consensus 465 d~~i~vwd~----~~~----~~----------------~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 519 (1093)
|| .+|.+ ..| ++ +-.+. .+..+|..+.+.. ....+.+-+..|+|.+||+..
T Consensus 198 dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~--SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 198 DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN--SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc--ccceeeeeccCceEEEEEccC
Confidence 66 44533 211 11 11223 4677898888843 446889999999999999876
No 459
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=90.51 E-value=35 Score=38.61 Aligned_cols=61 Identities=11% Similarity=0.151 Sum_probs=38.8
Q ss_pred CCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCC
Q 001352 336 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 409 (1093)
Q Consensus 336 ~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg 409 (1093)
+..+.++|.|||+ +|++--..|.|++++..++.......+ .........+....|+|+|+-
T Consensus 30 ~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l------------~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 30 NKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTL------------PEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecC------------CceeccCCCCceeeEEECCCc
Confidence 4789999999997 566644369999998766543221111 000011136778899999884
No 460
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=90.43 E-value=55 Score=40.64 Aligned_cols=173 Identities=14% Similarity=0.156 Sum_probs=101.2
Q ss_pred CCCCeeEEEEc---c----CCCEEEEEeCCeEEEEEccCc---------------eeEEEECC---CCCCeEEEEEcCCC
Q 001352 802 SQEAVPCFALS---K----NDAYLFSASGGVISLYIVMTF---------------KTILTIMP---PSPTATSLAFNPHD 856 (1093)
Q Consensus 802 ~~~~v~~l~~s---~----dg~~la~~~dg~i~iwd~~~~---------------~~~~~~~~---~~~~i~~l~~s~~d 856 (1093)
...+|..|+|+ . ...+|++-....+.|+...-. ..+..+.. ...+...++|+|.+
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~ 157 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD 157 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence 46688888887 2 235788777777888773211 12222221 22355677888777
Q ss_pred CCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccC
Q 001352 857 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL 936 (1093)
Q Consensus 857 ~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 936 (1093)
.+.+|+....|...||++..+... +.. . +-+.....|.| +.|... .
T Consensus 158 ~~q~AiVD~~G~Wsvw~i~~~~~~-----~~~-~----------~~~~~~~~gsi-~~d~~e--------------~--- 203 (765)
T PF10214_consen 158 QRQFAIVDEKGNWSVWDIKGRPKR-----KSS-N----------LRLSRNISGSI-IFDPEE--------------L--- 203 (765)
T ss_pred cceEEEEeccCcEEEEEecccccc-----CCc-c----------eeeccCCCccc-cCCCcc--------------c---
Confidence 778888888888888887211110 000 1 11111122222 222211 0
Q ss_pred CCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceee-eeecCCCCCEEEEEEccC--CCEEEEEeCCCcEEEEEcCCC
Q 001352 937 APSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLK-QWFPISSVPISQATFSCD--CRMVFTSFVDGTLSIHEASNL 1011 (1093)
Q Consensus 937 ~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~-~~~~~h~~~v~~~~fs~d--g~~l~t~~~dg~v~vwd~~~~ 1011 (1093)
..-..+.|.++-..|++.....+.++|+.+..... .........|..+.-+++ +..++-. ...|...++...
T Consensus 204 -s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~~ 278 (765)
T PF10214_consen 204 -SNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKSS 278 (765)
T ss_pred -CcceeeEecCCCCEEEEEcCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccCC
Confidence 12457888899889999888899999998776533 222334668888888887 3333322 356777788773
No 461
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=90.29 E-value=35 Score=38.17 Aligned_cols=149 Identities=8% Similarity=0.033 Sum_probs=85.8
Q ss_pred eEEEEEcCCCCCEEEEEeCCCeEEEEEcCCccee--eecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCcee--
Q 001352 847 ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI--SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ-- 922 (1093)
Q Consensus 847 i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~--~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~-- 922 (1093)
...+..++ ++.+++.+..-..++-||- |+.. ..-......++++.|.+++.+++.+ .+|.+ +|..+.++.-
T Consensus 241 f~~v~~~~-dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~ 315 (398)
T PLN00033 241 FSTVNRSP-DGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEED 315 (398)
T ss_pred eeeEEEcC-CCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCcccc
Confidence 34456667 7777776654433333432 2221 1112234568999999998877654 56654 4444443211
Q ss_pred -eeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeeee--cCCCCCEEEEEEccCCCEEEEEeC
Q 001352 923 -TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWF--PISSVPISQATFSCDCRMVFTSFV 999 (1093)
Q Consensus 923 -~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~--~~h~~~v~~~~fs~dg~~l~t~~~ 999 (1093)
....+...... ..+.++.|.+++..+++|..|.+.... ..|+.-.... ..-......+.|.++++.+++| .
T Consensus 316 ~~f~~~~~~~~~----~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~ 389 (398)
T PLN00033 316 FDFEEADIKSRG----FGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-N 389 (398)
T ss_pred cceeecccCCCC----cceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-C
Confidence 11111111111 248889999999999999888776654 4444433322 1224578899998888777755 6
Q ss_pred CCcEEEE
Q 001352 1000 DGTLSIH 1006 (1093)
Q Consensus 1000 dg~v~vw 1006 (1093)
+|.|.-|
T Consensus 390 ~G~il~~ 396 (398)
T PLN00033 390 DGVLLRY 396 (398)
T ss_pred CcEEEEe
Confidence 7876554
No 462
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=89.98 E-value=1.3 Score=30.68 Aligned_cols=32 Identities=22% Similarity=0.223 Sum_probs=26.8
Q ss_pred CCeEEEEECCCC---CEEEEEEcCCEEEEEEccCC
Q 001352 398 VSVNRVVWSPDG---SLLGVAYSKHIVQLYAYHGG 429 (1093)
Q Consensus 398 ~~V~~v~~s~dg---~~las~~~d~~i~iwd~~~~ 429 (1093)
+.|.++.|||+. .+|+.+-..+.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468999999854 58998888899999999863
No 463
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=89.75 E-value=22 Score=41.20 Aligned_cols=147 Identities=13% Similarity=0.097 Sum_probs=73.4
Q ss_pred CCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEE
Q 001352 865 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 944 (1093)
Q Consensus 865 ~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 944 (1093)
..+...++|.. |..+..+.........+.+.++|.+++..+ ..+..+|+.+.. ... .....+... -=..+.
T Consensus 126 ~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~v-~~~--~~l~~~~~~---~HHD~~ 196 (477)
T PF05935_consen 126 SSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGKV-IWE--YDLPGGYYD---FHHDID 196 (477)
T ss_dssp BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT--E-EEE--EE--TTEE----B-S-EE
T ss_pred CCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCCE-EEe--eecCCcccc---cccccE
Confidence 34456666644 555544432222111166778998887655 678888887532 221 222221100 012477
Q ss_pred EccCCCEEEEEe--------------CCeEEEEEcCCcceeeeeecC-C-------------------------CCCEEE
Q 001352 945 FHKDQTRFLLVH--------------ETHLAIYEAEELTCLKQWFPI-S-------------------------SVPISQ 984 (1093)
Q Consensus 945 ~s~dg~~l~~~~--------------d~~i~vwd~~~~~~~~~~~~~-h-------------------------~~~v~~ 984 (1093)
.-|+|++|+.+. +..|..+| .+|+.+..|... | =..+.+
T Consensus 197 ~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Ns 275 (477)
T PF05935_consen 197 ELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINS 275 (477)
T ss_dssp E-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEE
T ss_pred ECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCc
Confidence 889999988754 23466666 677766554211 1 135788
Q ss_pred EEEcc-CCCEEEEEeCCCcEEEEEcCCCceEEEecccc
Q 001352 985 ATFSC-DCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1021 (1093)
Q Consensus 985 ~~fs~-dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~ 1021 (1093)
+.+.+ |+.+|+++=.-..|...|..++++...+....
T Consensus 276 i~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 276 IDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp EEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred cEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 99988 55555555444578888988999988877544
No 464
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=89.71 E-value=33 Score=38.38 Aligned_cols=39 Identities=10% Similarity=0.044 Sum_probs=19.4
Q ss_pred EEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEEC
Q 001352 603 IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 643 (1093)
Q Consensus 603 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 643 (1093)
+.+||..+.+....-..... .....+..-+++++++|+.
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~--r~~~~av~~~~~iyv~GG~ 352 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQG--LAYGVSVSWNNGVLLIGGE 352 (376)
T ss_pred hheEEecCCcccccCcCCCC--ccceEEEEeCCEEEEEcCC
Confidence 45788887665432222211 1122334445667777765
No 465
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=89.68 E-value=39 Score=37.79 Aligned_cols=199 Identities=16% Similarity=0.116 Sum_probs=105.0
Q ss_pred EEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCC-CeE
Q 001352 412 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA-PVY 490 (1093)
Q Consensus 412 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~-~v~ 490 (1093)
+.++..+|.|.-.|.+++..+-..... +....+..-.+..+|+ ++.++.++.+...|..+|+.+........ .+.
T Consensus 71 v~~~~~~G~i~A~d~~~g~~~W~~~~~-~~~~~~~~~~~~~~G~---i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~ 146 (370)
T COG1520 71 VYVGTRDGNIFALNPDTGLVKWSYPLL-GAVAQLSGPILGSDGK---IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA 146 (370)
T ss_pred EEEecCCCcEEEEeCCCCcEEecccCc-CcceeccCceEEeCCe---EEEecccceEEEEECCCCcEEEEEecCCCeEEe
Confidence 333466777777777777533211111 1112223333333776 77788899999999889999887765551 111
Q ss_pred EeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC---ceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001352 491 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL---GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 567 (1093)
Q Consensus 491 ~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~---~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~ 567 (1093)
.-.+ ..+ ..+..++.+|.+...+..++........... .+..-....++... .+..+ - ++.+.-.|..+|.
T Consensus 147 ~~~v--~~~-~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy-~~~~~-~-~~~~~a~~~~~G~ 220 (370)
T COG1520 147 SPPV--VGD-GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVY-VGSDG-Y-DGILYALNAEDGT 220 (370)
T ss_pred cCcE--EcC-cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEE-EecCC-C-cceEEEEEccCCc
Confidence 1111 112 2444455778888888887777666444321 11111112233333 32221 1 3357777877777
Q ss_pred eeeeeecccccC-CCeEEE-EEcC----CCCEEEEEeCCCcEEEEECCCCceEEEEecC
Q 001352 568 IKRTYQGLQLQH-NSVSVV-HFDT----AKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 620 (1093)
Q Consensus 568 ~~~~~~~~~~~~-~~v~~v-~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 620 (1093)
..-......... ..+... .+.. .+..++.++.++.+...|..+++.+..++..
T Consensus 221 ~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 221 LKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred EeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 665533221000 001000 1100 1223466777888999999999999888754
No 466
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.31 E-value=6.6 Score=43.37 Aligned_cols=95 Identities=17% Similarity=0.132 Sum_probs=62.8
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEc----------CCCc--eEEEeccccccCCCCCCCccceeEEEeCCCC--C
Q 001352 979 SVPISQATFSCDCRMVFTSFVDGTLSIHEA----------SNLE--VQCRILSTAYLRPTTSCLHVYPHAIAAHPLK--P 1044 (1093)
Q Consensus 979 ~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~----------~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d--~ 1044 (1093)
.-.|..+..|+.|..++-+|.+|.+.+ .+ ..|+ ..|+..+.... --....++.-..++|||+. .
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vM-eLp~rwG~~s~~eDgk~~v~CRt~~i~~~-~ftss~~ltl~Qa~WHP~S~~D 180 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVM-ELPKRWGKNSEFEDGKSTVNCRTTPVAER-FFTSSTSLTLKQAAWHPSSILD 180 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEE-EchhhcCccceecCCCceEEEEeecccce-eeccCCceeeeeccccCCccCC
Confidence 446778888999999999999985443 33 2232 23333211100 0012344556678899953 3
Q ss_pred CEEEEEeCCCcEEEEecCCCCCCcccCCCcc
Q 001352 1045 TQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1075 (1093)
Q Consensus 1045 ~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~ 1075 (1093)
..|..-..|..+++|+.++...-|..++|--
T Consensus 181 ~hL~iL~sdnviRiy~lS~~telylqpgepg 211 (741)
T KOG4460|consen 181 PHLVLLTSDNVIRIYSLSEPTELYLQPGEPG 211 (741)
T ss_pred ceEEEEecCcEEEEEecCCcchhhccCCCcC
Confidence 6788999999999999998887787775544
No 467
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=89.31 E-value=51 Score=38.68 Aligned_cols=80 Identities=9% Similarity=0.135 Sum_probs=48.4
Q ss_pred CCEEEEEeCCeEEEEEccCceeEEEECC-CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecc-----cccC
Q 001352 815 DAYLFSASGGVISLYIVMTFKTILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-----GHSK 888 (1093)
Q Consensus 815 g~~la~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~-----~h~~ 888 (1093)
+..++-.....|++.+...++....... ....|.+.+.. +.+++.+..++.+..+.+.......... ....
T Consensus 418 ~~~ivQVt~~~i~l~~~~~~~~~~~w~~~~~~~I~~a~~~---~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (504)
T PF10433_consen 418 DGRIVQVTPKGIRLIDLEDGKLTQEWKPPAGSIIVAASIN---DPQVLVALSGGELVYFELDDNKISVSDNDETILELDN 494 (504)
T ss_dssp TTEEEEEESSEEEEEESSSTSEEEEEE-TTS---SEEEES---SSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS
T ss_pred CCeEEEEecCeEEEEECCCCeEEEEEeCCCCCeEEEEEEC---CCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCC
Confidence 5666666677799999888877776543 34456666664 3467777778999999988765532222 1467
Q ss_pred CeEEEEEeC
Q 001352 889 RVTGLVFSD 897 (1093)
Q Consensus 889 ~V~~l~~s~ 897 (1093)
.|.|+..+|
T Consensus 495 eis~l~i~p 503 (504)
T PF10433_consen 495 EISCLSIEP 503 (504)
T ss_dssp -EEEEE---
T ss_pred ceEEEEeCC
Confidence 788887765
No 468
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.16 E-value=0.087 Score=56.78 Aligned_cols=243 Identities=16% Similarity=0.114 Sum_probs=136.9
Q ss_pred EEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEE
Q 001352 740 RLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF 819 (1093)
Q Consensus 740 ~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la 819 (1093)
...+.+.+..++.++.+..+..||-... ..... ........+++..++..++
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~agq-----------------------~~le~-----n~tg~aldm~wDkegdvla 90 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAGQ-----------------------VILEL-----NPTGKALDMAWDKEGDVLA 90 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhcc-----------------------eeccc-----CCchhHhhhhhccccchhh
Confidence 3456666666888887777776652221 11111 1334455677888887776
Q ss_pred EEe--CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeC
Q 001352 820 SAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 897 (1093)
Q Consensus 820 ~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~ 897 (1093)
+.. .+.+.+||+.+....+--.+....-.-+.|++ +...++.|...|.+.|++..+.+.+...-.|..+++++++.+
T Consensus 91 vlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l 169 (615)
T KOG2247|consen 91 VLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL 169 (615)
T ss_pred hhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEecc
Confidence 664 58899999975432211111111122278999 899999999999999999988777666555999999999998
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCC--CCceEEEEccCCCEEEEEeCCeEEEE----EcCCccee
Q 001352 898 ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA--PSETHIQFHKDQTRFLLVHETHLAIY----EAEELTCL 971 (1093)
Q Consensus 898 dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~dg~~l~~~~d~~i~vw----d~~~~~~~ 971 (1093)
.+ +.+.++.|..+.+-...+.... ..+. .+.+... .....=.|..-|..+...-.+.+.+. +-.++ ..
T Consensus 170 Ed-~vil~dcd~~L~v~~qegeta~---ltev-ggepdnm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~-pv 243 (615)
T KOG2247|consen 170 ED-YVILCDCDNTLSVTTQEGETAS---LTEV-GGEPDNMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDE-PV 243 (615)
T ss_pred cc-eeeecCcHHHHHHhhhccceee---eeec-cCccchhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCC-cc
Confidence 75 5666677766554433331111 1111 1111000 00111123334444444322222211 11111 11
Q ss_pred eeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEec
Q 001352 972 KQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1018 (1093)
Q Consensus 972 ~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~ 1018 (1093)
...+....+.+.++.|--||..+. +..-|.|..-...++++...|.
T Consensus 244 al~fq~~~gni~cyrwylDg~i~i-gf~ag~iV~iS~h~aeLgaeff 289 (615)
T KOG2247|consen 244 ALQFQEKYGNIHCYRWYLDGYILI-GFDAGYIVSISAHNAELGAEFF 289 (615)
T ss_pred ceEeeecCCceeEEEEeccccccc-cccceeEEEEeccchHHHHHHH
Confidence 112222356788888888885444 6666777777788877765543
No 469
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=88.95 E-value=40 Score=36.99 Aligned_cols=188 Identities=14% Similarity=0.163 Sum_probs=101.2
Q ss_pred EEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecc--cCCccE--EEEEec-C---CeEEEEEcCCCCceE-EecC
Q 001352 458 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA--KENIHF--IFSISV-D---GKIKAWLYDSLGARV-DYDA 528 (1093)
Q Consensus 458 ~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~~~--l~s~~~-d---g~i~vwd~~~~~~~~-~~~~ 528 (1093)
+++....++-+.+||+ .|+.++.+. .+.++.+.+.. .-+++. |+.++. + .+|++|.++...... .+..
T Consensus 70 lIigTdK~~GL~VYdL-~Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~ 146 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDL-DGKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTD 146 (381)
T ss_dssp EEEEEETTTEEEEEET-TS-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CB
T ss_pred eEEEEeCCCCEEEEcC-CCcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCC
Confidence 6777777888999995 566666664 23444443211 112222 444443 2 469999887533322 2221
Q ss_pred C-------CCceEEEEE--cc-CCCEEEEEecCCCCceeEEEEeC---CCC----eeeeeeecccccCCCeEEEEEcCCC
Q 001352 529 P-------GLGCTRMAY--SA-NGRRLFSCGTSKEGESFLVEWNE---SEG----AIKRTYQGLQLQHNSVSVVHFDTAK 591 (1093)
Q Consensus 529 ~-------~~~v~~~~~--s~-d~~~l~~~~~~~~~~~~i~iwd~---~~~----~~~~~~~~~~~~~~~v~~v~~~~~~ 591 (1093)
. ...+..+|+ ++ +|.+.+.... + ++.+..|.+ ..+ +.++.|... ..+..|......
T Consensus 147 ~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~-k--~G~~~Qy~L~~~~~g~v~~~lVR~f~~~----sQ~EGCVVDDe~ 219 (381)
T PF02333_consen 147 PAAPIATDLSEPYGLCLYRSPSTGALYAFVNG-K--DGRVEQYELTDDGDGKVSATLVREFKVG----SQPEGCVVDDET 219 (381)
T ss_dssp TTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE-T--TSEEEEEEEEE-TTSSEEEEEEEEEE-S----S-EEEEEEETTT
T ss_pred CCcccccccccceeeEEeecCCCCcEEEEEec-C--CceEEEEEEEeCCCCcEeeEEEEEecCC----CcceEEEEeccc
Confidence 1 123566765 33 4555444432 1 334555544 333 456777653 368888999888
Q ss_pred CEEEEEeCCCcEEEEECCCC-----ceEEEEecCCCCCCCceEEEe--cCCC-EEEE-EECCCeEEEEEcCCC
Q 001352 592 DQILAAGDDHVIKIWDMNKV-----QLLTTIDAGGGLPENPRICFN--KNGT-LLAV-IANENRIKILETPES 655 (1093)
Q Consensus 592 ~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~v~~v~~s--~~~~-~l~~-~~~dg~i~iw~~~~~ 655 (1093)
.+|+.+-++.-|.-|+.+.. +.+.......-...+-.+++- +++. +|++ .-.+++..+|+....
T Consensus 220 g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 220 GRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp TEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred CCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 99999999998888887632 222222222223446666664 3432 4444 444788999998754
No 470
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.93 E-value=7.5 Score=47.29 Aligned_cols=99 Identities=15% Similarity=0.156 Sum_probs=65.9
Q ss_pred CeeEEEEccCC--CEEEEEeCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeee
Q 001352 805 AVPCFALSKND--AYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK 882 (1093)
Q Consensus 805 ~v~~l~~s~dg--~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~ 882 (1093)
...++.|.|.- ..++.-.|+.|++..+.-......--......++++|+| .|+.+++|...|++.-|... ++....
T Consensus 157 f~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~-leik~~ 234 (1405)
T KOG3630|consen 157 FQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPS-LEIKSE 234 (1405)
T ss_pred ccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEecc-ccceeeEecCCCeEEEeecc-cceeec
Confidence 34556666643 223333477787777653333222223456789999999 99999999999999998755 444444
Q ss_pred ccc----ccCCeEEEEEeCCCCEEEEE
Q 001352 883 LEG----HSKRVTGLVFSDALNILVSS 905 (1093)
Q Consensus 883 l~~----h~~~V~~l~~s~dg~~l~s~ 905 (1093)
+.+ ....|.+|.|-....++++-
T Consensus 235 ip~Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 235 IPEPPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred ccCCCcCCCcceeEEEEecceeEEEEe
Confidence 332 24679999999877777754
No 471
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=88.37 E-value=34 Score=37.32 Aligned_cols=151 Identities=11% Similarity=0.110 Sum_probs=86.0
Q ss_pred CCCCeeEEEEcc-CCCEEEEEeCCe------EEEEEccC--c--eeE-----EEECCCCC--------CeEEEEEcCCCC
Q 001352 802 SQEAVPCFALSK-NDAYLFSASGGV------ISLYIVMT--F--KTI-----LTIMPPSP--------TATSLAFNPHDN 857 (1093)
Q Consensus 802 ~~~~v~~l~~s~-dg~~la~~~dg~------i~iwd~~~--~--~~~-----~~~~~~~~--------~i~~l~~s~~d~ 857 (1093)
.-+....+.+.+ ++.+++...+|. +..+++.. + ..+ ..+....+ ..-++++.+ ++
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~-~g 96 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPP-DG 96 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEec-CC
Confidence 345678889984 556666655565 55444433 1 111 11222221 344788866 88
Q ss_pred CEEEEEeCC------CeEEEEEcCCcceeeecc---------------cccCCeEEEEEeCCCCEEEEEeC-----CC--
Q 001352 858 NVIAIGMDD------STILIYNARSSEVISKLE---------------GHSKRVTGLVFSDALNILVSSGG-----DA-- 909 (1093)
Q Consensus 858 ~~lasg~~d------g~i~iwd~~~~~~~~~l~---------------~h~~~V~~l~~s~dg~~l~s~s~-----dg-- 909 (1093)
.++++.-.+ ..|+.++.. |+....+. ..+...-+|+++|||+.|.++.+ |+
T Consensus 97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~ 175 (326)
T PF13449_consen 97 SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPR 175 (326)
T ss_pred CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcc
Confidence 888876667 788888876 65544331 13456889999999997666533 22
Q ss_pred -------cEEEEeCCCCc---eeeeeeeecCC-CcccCCCCceEEEEccCCCEEEE
Q 001352 910 -------QIFVWDVDGWG---IQTCRSLQTPD-GVMTLAPSETHIQFHKDQTRFLL 954 (1093)
Q Consensus 910 -------~i~iwd~~~~~---~~~~~~~~~~~-~~~~~~~~v~~~~~s~dg~~l~~ 954 (1093)
.++|+.++... ........... ........++.+.+-+++++|+.
T Consensus 176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 15565554321 12222222221 00001236899999999998887
No 472
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=88.12 E-value=67 Score=41.71 Aligned_cols=150 Identities=15% Similarity=0.196 Sum_probs=87.9
Q ss_pred cCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEE
Q 001352 333 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 412 (1093)
Q Consensus 333 ~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~l 412 (1093)
.|-..++.|.-+|+|.++ =. .|+.++.||..+++ |.+- -.....+++.++-.-||+..
T Consensus 360 aH~A~LTgv~~~~~ge~l-Rl--Hd~~LY~~d~~~~~---------Wk~~----------~~~~d~~~S~Ls~qgdG~lY 417 (1774)
T PF11725_consen 360 AHIAHLTGVHTDPDGEQL-RL--HDDRLYQFDPNTAR---------WKPP----------PDKSDTPFSSLSRQGDGKLY 417 (1774)
T ss_pred HHHHHhhccccCCCCCeE-Ee--ecCceeeeccccce---------ecCC----------CCcccchhhhhcccCCCceE
Confidence 355677778888898853 32 67889999987653 3210 01123455566666677766
Q ss_pred EEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCC------ce--eEEeec
Q 001352 413 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG------SR--TYSFEG 484 (1093)
Q Consensus 413 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~------~~--~~~~~~ 484 (1093)
| =+.+ .+-|+..+..-. ..-..+.+...+++|.- .+.++-....+.+|++... ++ ...+.+
T Consensus 418 A-k~~~---~l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~d 486 (1774)
T PF11725_consen 418 A-KDDD---TLVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLAD 486 (1774)
T ss_pred e-cCCC---ceeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeeccC
Confidence 6 2222 233555443111 12235777888999983 3666666667799998654 11 122333
Q ss_pred CCCCeEEeeecccCCccEEEEEecCCeEEEEEcCC
Q 001352 485 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 519 (1093)
Q Consensus 485 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 519 (1093)
-.....++.++ ++ .|+++..+|.++.=++..
T Consensus 487 G~a~A~~VgLs--~d--rLFvADseGkLYsa~l~~ 517 (1774)
T PF11725_consen 487 GKAQAQSVGLS--ND--RLFVADSEGKLYSADLPA 517 (1774)
T ss_pred Cchhhhheeec--CC--eEEEEeCCCCEEeccccc
Confidence 33345556553 33 688888899888776654
No 473
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=88.06 E-value=21 Score=39.52 Aligned_cols=149 Identities=9% Similarity=0.099 Sum_probs=89.7
Q ss_pred EEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccC------CccEEEEEecCCeEEEEEcCCCC
Q 001352 448 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE------NIHFIFSISVDGKIKAWLYDSLG 521 (1093)
Q Consensus 448 ~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~------~~~~l~s~~~dg~i~vwd~~~~~ 521 (1093)
+-...+...+++..|+....++--|++.|+.+-.+..|...| +.+.|.. +.+.|+..| +..|.-.|.+...
T Consensus 472 ~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlvGlS-~~svFrIDPR~~g 548 (776)
T COG5167 472 IMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLVGLS-DYSVFRIDPRARG 548 (776)
T ss_pred ceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEEeec-ccceEEecccccC
Confidence 333334444466777778888889999999999998887664 3333321 223454444 4444445555444
Q ss_pred ceEEecCCCC-----ceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEE
Q 001352 522 ARVDYDAPGL-----GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA 596 (1093)
Q Consensus 522 ~~~~~~~~~~-----~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~ 596 (1093)
.......... ...+..- ...-++++++..++ |++||--.-+....+.+.. ..|..+..+.+|.++++
T Consensus 549 NKi~v~esKdY~tKn~Fss~~t-TesGyIa~as~kGD----irLyDRig~rAKtalP~lG---~aIk~idvta~Gk~ila 620 (776)
T COG5167 549 NKIKVVESKDYKTKNKFSSGMT-TESGYIAAASRKGD----IRLYDRIGKRAKTALPGLG---DAIKHIDVTANGKHILA 620 (776)
T ss_pred Cceeeeeehhcccccccccccc-ccCceEEEecCCCc----eeeehhhcchhhhcCcccc---cceeeeEeecCCcEEEE
Confidence 2222211111 1222222 23457888876443 9999965555555555555 78999999999999998
Q ss_pred EeCCCcEEEEEC
Q 001352 597 AGDDHVIKIWDM 608 (1093)
Q Consensus 597 ~~~dg~i~iwd~ 608 (1093)
.+.. .+.+-|+
T Consensus 621 TCk~-yllL~d~ 631 (776)
T COG5167 621 TCKN-YLLLTDV 631 (776)
T ss_pred eecc-eEEEEec
Confidence 7753 4555554
No 474
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=87.56 E-value=47 Score=36.20 Aligned_cols=108 Identities=9% Similarity=-0.038 Sum_probs=50.6
Q ss_pred EEEEEcCC-----CcEEEEECCCCcee---EEeecCCCCe--EEeeecccCCccEEEEEec-----CCeEEEEEcCCCCc
Q 001352 458 SVITCGDD-----KTIKVWDAVTGSRT---YSFEGHGAPV--YSLCPHAKENIHFIFSISV-----DGKIKAWLYDSLGA 522 (1093)
Q Consensus 458 ~l~s~~~d-----~~i~vwd~~~~~~~---~~~~~h~~~v--~~~~~~~~~~~~~l~s~~~-----dg~i~vwd~~~~~~ 522 (1093)
+++.|+.+ ..+..+|+.+.+.. ..+..-..+. .+++. . ++.+.+.|+. ...+..||+.+.+=
T Consensus 75 lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~--~-~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 75 IYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY--K-DGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred EEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE--E-CCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 55666654 25667777766531 2221111111 11121 1 3455566654 23577777765432
Q ss_pred eEEecCCC-CceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCee
Q 001352 523 RVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 568 (1093)
Q Consensus 523 ~~~~~~~~-~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~ 568 (1093)
...-..+. ......+...+++..+.++.++.....+..||+.+.+-
T Consensus 152 ~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 152 FELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred eECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 21111111 12223333456677777665332223367889887654
No 475
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=87.43 E-value=2.5 Score=29.32 Aligned_cols=32 Identities=13% Similarity=0.093 Sum_probs=26.3
Q ss_pred CCEEEEEEccCCC---EEEEEeCCCcEEEEEcCCC
Q 001352 980 VPISQATFSCDCR---MVFTSFVDGTLSIHEASNL 1011 (1093)
Q Consensus 980 ~~v~~~~fs~dg~---~l~t~~~dg~v~vwd~~~~ 1011 (1093)
+.|.++.|||+.. +|+.+-.-|.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4688999998554 8888877899999999963
No 476
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=87.36 E-value=38 Score=34.93 Aligned_cols=276 Identities=10% Similarity=0.058 Sum_probs=128.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceee
Q 001352 580 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD 659 (1093)
Q Consensus 580 ~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 659 (1093)
+-+..+.++ +++.+.+..+.-++|.|+.+...-..+..-.... ..-.+.-.|++..++..+.-+.+.|+.+.....
T Consensus 87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~g--yaygv~vsGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDG--YAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCc--eEEEEEecCCEEEEeeccCcEEEEECCCCCCce
Confidence 345566665 4678888888889999998765433332111101 223334458888888867777788887653322
Q ss_pred e---cccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCcccccc
Q 001352 660 A---AGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN 736 (1093)
Q Consensus 660 ~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 736 (1093)
. ..........++++ |++-..+..|+-+.+-|+......... .......
T Consensus 163 lagrya~~~~d~~~v~IS------------------------Gn~AYvA~~d~GL~ivDVSnp~sPvli----~~~n~g~ 214 (370)
T COG5276 163 LAGRYALPGGDTHDVAIS------------------------GNYAYVAWRDGGLTIVDVSNPHSPVLI----GSYNTGP 214 (370)
T ss_pred eeeeeccCCCCceeEEEe------------------------cCeEEEEEeCCCeEEEEccCCCCCeEE----EEEecCC
Confidence 1 11111111222222 555556667777777776533221111 0011222
Q ss_pred ceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCC
Q 001352 737 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 816 (1093)
Q Consensus 737 ~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 816 (1093)
.+.++..+++..+++.. ..| +.+-+....+ .+.++....- .....++.+..+ ++
T Consensus 215 g~~sv~vsdnr~y~vvy-~eg-vlivd~s~~s-----------sp~~~gsyet-----------~~p~~~s~v~Vs--~~ 268 (370)
T COG5276 215 GTYSVSVSDNRAYLVVY-DEG-VLIVDVSGPS-----------SPTVFGSYET-----------SNPVSISTVPVS--GE 268 (370)
T ss_pred ceEEEEecCCeeEEEEc-ccc-eEEEecCCCC-----------CceEeecccc-----------CCcccccceecc--cc
Confidence 56666666665543333 222 2222222111 1111111100 122222333443 33
Q ss_pred EEEEEe-CCeEEEEEccCcee---EEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEE
Q 001352 817 YLFSAS-GGVISLYIVMTFKT---ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG 892 (1093)
Q Consensus 817 ~la~~~-dg~i~iwd~~~~~~---~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~ 892 (1093)
+...+. +..+.+-|+..... ...+.........+..+ +.++..+..+ +..+-+....+......+-...+.+
T Consensus 269 ~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay---~~y~yiadkn-~g~vV~~s~~s~m~~~~g~~ti~~s 344 (370)
T COG5276 269 YAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY---GNYNYIADKN-TGAVVDASPPSMMDKRPGRPTIGQS 344 (370)
T ss_pred eeeeeccccCceeEeccCCCCCchhccccCCCccccceEEe---cCeeEeccCC-ceEEEeCCChhhcccccCcceEeee
Confidence 333333 33344445443211 11111111123333332 2244434333 3444455444433333333344555
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEeCC
Q 001352 893 LVFSDALNILVSSGGDAQIFVWDVD 917 (1093)
Q Consensus 893 l~~s~dg~~l~s~s~dg~i~iwd~~ 917 (1093)
.+.+-+.+.+-+...++.+.||+..
T Consensus 345 ~~v~~~~q~~y~~d~~~gl~i~~~~ 369 (370)
T COG5276 345 CDVSVDTQIIYSTDYNGGLSIIEYL 369 (370)
T ss_pred cceEEEeeEEEEeecCCCEEEEEec
Confidence 5555567788888889999999863
No 477
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=87.28 E-value=1.1 Score=30.67 Aligned_cols=30 Identities=10% Similarity=0.207 Sum_probs=22.4
Q ss_pred CCCCceeeeecCCCceEEEEEccC--CcEEEE
Q 001352 334 GSSSPMSMDFHPVQHTLLLVGTNV--GDTGLW 363 (1093)
Q Consensus 334 h~~~V~~~~~spdg~~llasg~~d--g~i~iw 363 (1093)
....-.+.+|||||++|+.++..+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 444678899999999988887777 666665
No 478
>PRK13684 Ycf48-like protein; Provisional
Probab=87.04 E-value=51 Score=36.06 Aligned_cols=154 Identities=19% Similarity=0.159 Sum_probs=92.1
Q ss_pred CCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEE-ECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceee
Q 001352 803 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILT-IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS 881 (1093)
Q Consensus 803 ~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~ 881 (1093)
...+.++.+.|++.+++++..|.+..-.-..++.-.. .......++++++.+ +++.+++| ..|.+++=..+.|..-.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQP-DGNLWMLA-RGGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcC-CCCEEEEe-cCCEEEEccCCCCCccc
Confidence 4567889999999999888888655321112221111 223446789999999 78777665 46766532344443222
Q ss_pred eccc----ccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeC
Q 001352 882 KLEG----HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 957 (1093)
Q Consensus 882 ~l~~----h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d 957 (1093)
.... -...+.++.+.+++..++ ++.+|.|. ...+.++ .........+.. .....+.|..+++.++++..
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~--tW~~~~~~~~~~---~~~~~~~~~~~~~~~~~G~~ 322 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGK--TWEKDPVGEEVP---SNFYKIVFLDPEKGFVLGQR 322 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCC--CCeECCcCCCCC---cceEEEEEeCCCceEEECCC
Confidence 1111 123578899999877555 55677544 4555433 111111111111 24778888888999999999
Q ss_pred CeEEEEEc
Q 001352 958 THLAIYEA 965 (1093)
Q Consensus 958 ~~i~vwd~ 965 (1093)
|.|.-|+-
T Consensus 323 G~il~~~~ 330 (334)
T PRK13684 323 GVLLRYVG 330 (334)
T ss_pred ceEEEecC
Confidence 98877763
No 479
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.02 E-value=11 Score=47.54 Aligned_cols=69 Identities=10% Similarity=0.148 Sum_probs=46.9
Q ss_pred CceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q 001352 939 SETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV 1013 (1093)
Q Consensus 939 ~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~ 1013 (1093)
.+.+..+...+..+.....+.+-+|+.........+...+.. .+.++..++++..||.+..||...+..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 200 ESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQL------ESRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccceeeeecCCCcceeeeeeeeeehhcccccchhhccccccc------CccCCceEEEEEecCCEEeeecCCCce
Confidence 345555555566666666667777776555444443322211 189999999999999999999999855
No 480
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=86.99 E-value=15 Score=40.63 Aligned_cols=143 Identities=15% Similarity=0.225 Sum_probs=88.5
Q ss_pred ccCCCEEEEEe--CCeEEEEEccCceeEEEECCCCCCeEEEEEcCC-------CCCEEEEEeCCCeEEEEEcCC-cceee
Q 001352 812 SKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH-------DNNVIAIGMDDSTILIYNARS-SEVIS 881 (1093)
Q Consensus 812 s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~-------d~~~lasg~~dg~i~iwd~~~-~~~~~ 881 (1093)
..|..++...+ ...+.-.|++.|+.+.....|... -+.|.|. +.+.|+ |-.+..|.-.|.+- |..+.
T Consensus 476 ~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~ 552 (776)
T COG5167 476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIK 552 (776)
T ss_pred cCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCcee
Confidence 34455555444 256778899999999998877665 4666662 223444 55566665556543 32222
Q ss_pred ecccccCCeEEEEEeC----CCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeC
Q 001352 882 KLEGHSKRVTGLVFSD----ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 957 (1093)
Q Consensus 882 ~l~~h~~~V~~l~~s~----dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d 957 (1093)
..+ ...-++.-.||. ...++|.+|.-|-|++||--+....+ . +++ .+..|..+..+.+|+++++...
T Consensus 553 v~e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKt--a---lP~---lG~aIk~idvta~Gk~ilaTCk 623 (776)
T COG5167 553 VVE-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKT--A---LPG---LGDAIKHIDVTANGKHILATCK 623 (776)
T ss_pred eee-ehhccccccccccccccCceEEEecCCCceeeehhhcchhhh--c---Ccc---cccceeeeEeecCCcEEEEeec
Confidence 111 111222223332 34689999999999999976633222 1 111 2236889999999999999888
Q ss_pred CeEEEEEcC
Q 001352 958 THLAIYEAE 966 (1093)
Q Consensus 958 ~~i~vwd~~ 966 (1093)
..+.+-|+.
T Consensus 624 ~yllL~d~~ 632 (776)
T COG5167 624 NYLLLTDVP 632 (776)
T ss_pred ceEEEEecc
Confidence 888888874
No 481
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=86.84 E-value=58 Score=42.24 Aligned_cols=133 Identities=13% Similarity=0.069 Sum_probs=79.0
Q ss_pred EeCCCeEEEEEcCCcc-------eeeecc---------cccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeee
Q 001352 863 GMDDSTILIYNARSSE-------VISKLE---------GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRS 926 (1093)
Q Consensus 863 g~~dg~i~iwd~~~~~-------~~~~l~---------~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~ 926 (1093)
|-.||.|.-||-.+.. -+..|+ -..+.|..+.+++...-++-+. +..+-+=-. ..+......
T Consensus 619 ~L~~G~i~~wD~ttq~W~~~~~kd~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~-~~~~a~~~~-r~~~e~G~~ 696 (1774)
T PF11725_consen 619 GLQDGKIQYWDSTTQCWKDAGVKDIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGD-NNVFALPQR-RNKVELGDA 696 (1774)
T ss_pred eeccceEeeecCcchhhhhccCcCHHHHhccccCCceEecCCceeeeecccCCCccccCC-Ccccccccc-cCCCCCCcc
Confidence 5568999999976421 111111 1345677777777655554432 221111000 111111223
Q ss_pred eecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 001352 927 LQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLS 1004 (1093)
Q Consensus 927 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~ 1004 (1093)
+..++. ..|+++++-.+.++++....|.+.... ..+..+..-..+-.+.|..++......+.+ -..+|.++
T Consensus 697 l~Gl~~-----~~i~a~Avv~~~~fvald~qg~lt~h~-k~g~p~~l~~~gl~G~ik~l~lD~~~nL~A-lt~~G~Lf 767 (1774)
T PF11725_consen 697 LEGLED-----RVITAFAVVNDNKFVALDDQGDLTAHQ-KPGRPVPLSRPGLSGEIKDLALDEKQNLYA-LTSTGELF 767 (1774)
T ss_pred ccCCCc-----CcceeEEEEcCCceEEeccCCcccccc-CCCCCccCCCCCCCcchhheeeccccceeE-ecCCCcee
Confidence 333331 368999999999999999999999888 666655444445578999999988765555 45677544
No 482
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=86.67 E-value=75 Score=37.56 Aligned_cols=242 Identities=13% Similarity=0.194 Sum_probs=126.3
Q ss_pred EEccCCCEEEEEe-CCeEEEEEcc-CceeEEEECC-CCCCeEEEEEcCCC--CCEEEEEeCCC-eEEEEEcCCc------
Q 001352 810 ALSKNDAYLFSAS-GGVISLYIVM-TFKTILTIMP-PSPTATSLAFNPHD--NNVIAIGMDDS-TILIYNARSS------ 877 (1093)
Q Consensus 810 ~~s~dg~~la~~~-dg~i~iwd~~-~~~~~~~~~~-~~~~i~~l~~s~~d--~~~lasg~~dg-~i~iwd~~~~------ 877 (1093)
.++|+...+-.|- ...|.-|-+. |.+.+..+.- ...-|.|+..-..+ .++.++|-.++ .-++-.+..+
T Consensus 34 ~~s~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~~ 113 (670)
T PF10395_consen 34 DFSPDSNQIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTED 113 (670)
T ss_pred ccCCCCceEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCccccc
Confidence 5677777776664 3445555443 4556665543 34567777664311 34555564444 3344333322
Q ss_pred -----ce--eeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCc-ccCCCCceEEEEccCC
Q 001352 878 -----EV--ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGV-MTLAPSETHIQFHKDQ 949 (1093)
Q Consensus 878 -----~~--~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~dg 949 (1093)
+. ...++ -.+.|..+.|.++++.+++.-.+|.|.+||.+.+.......+...... .....-|.....-...
T Consensus 114 ~~~~~e~~~~~~~k-l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~ 192 (670)
T PF10395_consen 114 GTVNSETTNEFELK-LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGK 192 (670)
T ss_pred cccCccccceEEEE-cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCC
Confidence 11 11122 356799999999999999999999999999944332221111111110 0000011111111223
Q ss_pred CEEEE-Ee-CC---eEEEEEc--CCcceeeeee--cCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCceEEEecc
Q 001352 950 TRFLL-VH-ET---HLAIYEA--EELTCLKQWF--PISSVPISQATFSC-DCRMVFTSFVDGTLSIHEASNLEVQCRILS 1019 (1093)
Q Consensus 950 ~~l~~-~~-d~---~i~vwd~--~~~~~~~~~~--~~h~~~v~~~~fs~-dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~ 1019 (1093)
.++++ +. ++ ..+++.+ .+... ..+. ..+........|+. +|.+..- .++.|.+|++...+....+..
T Consensus 193 ~~ll~v~~~~~~k~~ykL~~l~~~~~~~-~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l 269 (670)
T PF10395_consen 193 DLLLTVSQLSNSKLSYKLISLSNESSSI-FELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISL 269 (670)
T ss_pred ceEEEEEEcCCCcEEEEEEEeccCCcce-EEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEe
Confidence 44444 33 22 4778887 22222 2211 11222333344444 5544333 678999999999999888885
Q ss_pred ccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecC
Q 001352 1020 TAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1062 (1093)
Q Consensus 1020 ~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~ 1062 (1093)
...+.... ..+.++ .+.+| .+.|+ +.++.|++.|+.
T Consensus 270 ~~ii~~~~--~~~vSl-~~~s~--nRvLL--s~~nkIyLld~~ 305 (670)
T PF10395_consen 270 PSIIDKES--DDLVSL-KPPSP--NRVLL--SVNNKIYLLDLK 305 (670)
T ss_pred chhhcccc--ccceEe-ecCCC--CeEEE--EcCCEEEEEeeh
Confidence 54444431 223322 22333 24444 457899999974
No 483
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=86.62 E-value=2.3 Score=45.67 Aligned_cols=158 Identities=9% Similarity=0.096 Sum_probs=98.2
Q ss_pred CCCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEE-EEC-CCCC----CeE-EEEEcCCCCCEEEEEeCCCeEEEE-E
Q 001352 802 SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTIL-TIM-PPSP----TAT-SLAFNPHDNNVIAIGMDDSTILIY-N 873 (1093)
Q Consensus 802 ~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~-~~~-~~~~----~i~-~l~~s~~d~~~lasg~~dg~i~iw-d 873 (1093)
....+..+-..|||+.+.+-+..++.++++.+..... .+. ...+ .|+ ++..-. ++.-|.+++.||-|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeee
Confidence 4567778899999999999888899999887543321 111 1111 222 222233 67778889999988877 4
Q ss_pred cCCc-c----eeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccC
Q 001352 874 ARSS-E----VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 948 (1093)
Q Consensus 874 ~~~~-~----~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 948 (1093)
...+ . .++.++-...++..+.--.+.+-+++-+..|++.++.-...+.. ..+..- ..+..+++||.
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~l---L~~~~~------~~~~~~~~Sp~ 368 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLL---LFERAY------QAPQLVAMSPN 368 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcce---ehhhhh------cCcceeeeCcc
Confidence 4322 2 12222222234444443334566788888888887765442211 111111 13667999999
Q ss_pred CCEEEEEeCCeEEEEEcCCcc
Q 001352 949 QTRFLLVHETHLAIYEAEELT 969 (1093)
Q Consensus 949 g~~l~~~~d~~i~vwd~~~~~ 969 (1093)
+.+|++-..|.++++.+++..
T Consensus 369 ~~~Ll~e~~gki~~~~l~Nr~ 389 (733)
T COG4590 369 QAYLLSEDQGKIRLAQLENRN 389 (733)
T ss_pred cchheeecCCceEEEEecCCC
Confidence 999999888999999887543
No 484
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=86.55 E-value=16 Score=37.36 Aligned_cols=148 Identities=11% Similarity=0.043 Sum_probs=82.5
Q ss_pred EEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC---CeeeeeeecccccCCCeEEEEEcC
Q 001352 513 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE---GAIKRTYQGLQLQHNSVSVVHFDT 589 (1093)
Q Consensus 513 ~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~---~~~~~~~~~~~~~~~~v~~v~~~~ 589 (1093)
.+||+.+.+...........+.+-++-+||+++.+++. .++...+++++..+ ..........-.....-.++..-|
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~-~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGD-NDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCC-CccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 45888776554433333334555668899999998875 34667788888755 111111111011112334455678
Q ss_pred CCCEEEEEeCCC-cEEEEECCC-CceEEEE---ec---CCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeec
Q 001352 590 AKDQILAAGDDH-VIKIWDMNK-VQLLTTI---DA---GGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA 661 (1093)
Q Consensus 590 ~~~~l~~~~~dg-~i~iwd~~~-~~~~~~~---~~---~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 661 (1093)
||+.++.|+... +..+|.... ......+ .. ......-..+...|+|++++.+..+ -.|||..+.+.+..+
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRTL 205 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEeeC
Confidence 999999987664 345555422 1111111 10 0111122357778999999888764 456688877665555
Q ss_pred cc
Q 001352 662 GV 663 (1093)
Q Consensus 662 ~~ 663 (1093)
..
T Consensus 206 P~ 207 (243)
T PF07250_consen 206 PD 207 (243)
T ss_pred CC
Confidence 54
No 485
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=86.16 E-value=21 Score=38.77 Aligned_cols=163 Identities=13% Similarity=0.124 Sum_probs=89.6
Q ss_pred cccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCee-EEEEc
Q 001352 734 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP-CFALS 812 (1093)
Q Consensus 734 ~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~l~~s 812 (1093)
....+..+-..|||+.+...+. ..+.++++........ + +-+-..|. ....|+ .+..-
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~r-k--------l~~dspg~-----------~~~~Vte~l~lL 277 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIR-K--------LVDDSPGD-----------SRHQVTEQLYLL 277 (733)
T ss_pred CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchh-h--------hhhcCCCc-----------hHHHHHHHHHHH
Confidence 4456778889999998887776 6788888776543211 0 01111110 001111 11112
Q ss_pred cCCCEEEEE-eCCeEEEE-EccCce-----eEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeeccc
Q 001352 813 KNDAYLFSA-SGGVISLY-IVMTFK-----TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG 885 (1093)
Q Consensus 813 ~dg~~la~~-~dg~i~iw-d~~~~~-----~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~ 885 (1093)
..|.-+.++ .||.|.-| |...+. .++.++-...++..+.--. +.+-+++-+..|++.++.....+.+-.-.
T Consensus 278 ~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~lL~~~- 355 (733)
T COG4590 278 SGGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKLLLFER- 355 (733)
T ss_pred hCceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccCcceehhh-
Confidence 233334444 36666655 443221 2222332333444444333 55667777888988888765544332222
Q ss_pred ccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc
Q 001352 886 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG 920 (1093)
Q Consensus 886 h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~ 920 (1093)
--..+.-+++||.+.+|++-. .|.++++.+++..
T Consensus 356 ~~~~~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~ 389 (733)
T COG4590 356 AYQAPQLVAMSPNQAYLLSED-QGKIRLAQLENRN 389 (733)
T ss_pred hhcCcceeeeCcccchheeec-CCceEEEEecCCC
Confidence 223566789999999998754 4569999888743
No 486
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=86.01 E-value=25 Score=34.27 Aligned_cols=150 Identities=11% Similarity=0.070 Sum_probs=77.7
Q ss_pred CccEEEEEecCC--eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeeccc
Q 001352 499 NIHFIFSISVDG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 576 (1093)
Q Consensus 499 ~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 576 (1093)
++.++.+.+.-| .|++||+.+++...........+..=-...-|.++..-.. .++.-..+|..+-+.+..+.-..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw---~egvaf~~d~~t~~~lg~~~y~G 131 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTW---KEGVAFKYDADTLEELGRFSYEG 131 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEe---ccceeEEEChHHhhhhcccccCC
Confidence 446677766544 5999999988877655443222211111112233332222 15556778888877766654322
Q ss_pred ccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCC---CCCceEEEecCCCEEEEEECCCeEEEEEcC
Q 001352 577 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL---PENPRICFNKNGTLLAVIANENRIKILETP 653 (1093)
Q Consensus 577 ~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 653 (1093)
.-..++ .|+..++.+....+++.-|.++.....++...... ...+.+.|- +|...|-.-.+..|...+..
T Consensus 132 ----eGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~ 204 (262)
T COG3823 132 ----EGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPD 204 (262)
T ss_pred ----cceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCC
Confidence 233333 35566777776777887787765554443322111 112333332 45555544444455555555
Q ss_pred CCcee
Q 001352 654 ESNSV 658 (1093)
Q Consensus 654 ~~~~~ 658 (1093)
+++.+
T Consensus 205 sGrV~ 209 (262)
T COG3823 205 SGRVV 209 (262)
T ss_pred CCcEE
Confidence 55433
No 487
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=85.63 E-value=18 Score=40.88 Aligned_cols=113 Identities=11% Similarity=0.066 Sum_probs=61.3
Q ss_pred cCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCC------CEEEEE--e--
Q 001352 887 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ------TRFLLV--H-- 956 (1093)
Q Consensus 887 ~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg------~~l~~~--~-- 956 (1093)
-...+.|+|.|||++|++--..|.|++++-.++.......+..... .........++|+|+- .+|.++ .
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~-~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVN-DAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceec-cCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 3457889999999888876556999999866543211111110000 0012468899999884 344442 1
Q ss_pred -------CCeEEEEEcCCc--c--eeeeeecC----CCCCEEEEEEccCCCEEEEEeCC
Q 001352 957 -------ETHLAIYEAEEL--T--CLKQWFPI----SSVPISQATFSCDCRMVFTSFVD 1000 (1093)
Q Consensus 957 -------d~~i~vwd~~~~--~--~~~~~~~~----h~~~v~~~~fs~dg~~l~t~~~d 1000 (1093)
...|.-|.+... . ....++.+ ....-..++|.|||.++++.+..
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 223444554321 1 01111211 01224457899999877766654
No 488
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=85.45 E-value=5.8 Score=40.15 Aligned_cols=74 Identities=9% Similarity=-0.045 Sum_probs=55.8
Q ss_pred EEEccCCCEEEE-EeCCeEEEEEcCCcceeeee------ec-------CCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 001352 943 IQFHKDQTRFLL-VHETHLAIYEAEELTCLKQW------FP-------ISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1008 (1093)
Q Consensus 943 ~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~------~~-------~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~ 1008 (1093)
+.+..++.+|++ ..+|.+++||+.+++.+..- .. .....|..+.++.+|.-|++-+ +|..+.|+.
T Consensus 16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence 446677777776 89999999999998765442 21 2457889999999998888765 588999998
Q ss_pred CCCceEEEe
Q 001352 1009 SNLEVQCRI 1017 (1093)
Q Consensus 1009 ~~~~~~~~~ 1017 (1093)
+-+....-.
T Consensus 95 ~L~~W~~vs 103 (219)
T PF07569_consen 95 DLGCWIRVS 103 (219)
T ss_pred ccceeEEec
Confidence 877655433
No 489
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=85.06 E-value=3.8 Score=41.42 Aligned_cols=74 Identities=9% Similarity=0.100 Sum_probs=51.5
Q ss_pred EeCCCCEEEEEeCCCcEEEEeCCCCceeeee-e-eecCCCcc----cCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCc
Q 001352 895 FSDALNILVSSGGDAQIFVWDVDGWGIQTCR-S-LQTPDGVM----TLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL 968 (1093)
Q Consensus 895 ~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~-~-~~~~~~~~----~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~ 968 (1093)
+..++++|+..+.+|.+++||+.+++..... . ........ .....|..+.++.+|.-+++-.+|..+.|+..=+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 4457889999999999999999987644322 1 11111100 1224688999999999888877788899987533
No 490
>PLN02193 nitrile-specifier protein
Probab=84.79 E-value=84 Score=36.43 Aligned_cols=153 Identities=8% Similarity=-0.018 Sum_probs=72.4
Q ss_pred EEEEEcCC-----CcEEEEECCCCceeEEeecC--CCCe--EEeeecccCCccEEEEEecCC-----eEEEEEcCCCCce
Q 001352 458 SVITCGDD-----KTIKVWDAVTGSRTYSFEGH--GAPV--YSLCPHAKENIHFIFSISVDG-----KIKAWLYDSLGAR 523 (1093)
Q Consensus 458 ~l~s~~~d-----~~i~vwd~~~~~~~~~~~~h--~~~v--~~~~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~ 523 (1093)
+++.|+.+ ..+.++|+.+.+-...-... ..+. .+++. . ++.+.+.|+.++ .+..||+.+.+-.
T Consensus 231 lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~--~-~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~ 307 (470)
T PLN02193 231 LYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA--D-EENVYVFGGVSATARLKTLDSYNIVDKKWF 307 (470)
T ss_pred EEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE--E-CCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence 55666654 35888898876543311100 1111 11211 1 345666666543 3566776553321
Q ss_pred EEecC----CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeec--ccccCCCeEEEEEcCCCCEEEEE
Q 001352 524 VDYDA----PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG--LQLQHNSVSVVHFDTAKDQILAA 597 (1093)
Q Consensus 524 ~~~~~----~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~--~~~~~~~v~~v~~~~~~~~l~~~ 597 (1093)
. ... +.......+..-+++..+.++.++.....+.+||+.+.+....-.. .........++.+ +++.++.|
T Consensus 308 ~-~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~--~~~iyv~G 384 (470)
T PLN02193 308 H-CSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAV--GKHIVIFG 384 (470)
T ss_pred e-CCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEE--CCEEEEEC
Confidence 1 111 0111111112235666666664433235589999988765433211 0100111222222 45566666
Q ss_pred eCC--------------CcEEEEECCCCceEEE
Q 001352 598 GDD--------------HVIKIWDMNKVQLLTT 616 (1093)
Q Consensus 598 ~~d--------------g~i~iwd~~~~~~~~~ 616 (1093)
+.. ..+.+||+.+.+....
T Consensus 385 G~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~ 417 (470)
T PLN02193 385 GEIAMDPLAHVGPGQLTDGTFALDTETLQWERL 417 (470)
T ss_pred CccCCccccccCccceeccEEEEEcCcCEEEEc
Confidence 643 2478899988776543
No 491
>PRK13613 lipoprotein LpqB; Provisional
Probab=84.75 E-value=94 Score=36.95 Aligned_cols=225 Identities=12% Similarity=0.077 Sum_probs=0.0
Q ss_pred CCeEEEEE------ccCceeEEEECCCCC-CeEEEEEcCCCCCEEEEEeCCC-eEEEEEcCCcce----eeecccccCCe
Q 001352 823 GGVISLYI------VMTFKTILTIMPPSP-TATSLAFNPHDNNVIAIGMDDS-TILIYNARSSEV----ISKLEGHSKRV 890 (1093)
Q Consensus 823 dg~i~iwd------~~~~~~~~~~~~~~~-~i~~l~~s~~d~~~lasg~~dg-~i~iwd~~~~~~----~~~l~~h~~~V 890 (1093)
+|.+...+ -.....+.-..+... .+.+.+.++ ++..+|....++ .+++..+..+.. ..... -...+
T Consensus 334 ~G~~~~~~~~~~~~~~~~~pv~g~~g~~~~~~~s~avS~-~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~-~~~~L 411 (599)
T PRK13613 334 DGQLWLLRISGTSNGTDPEPVPGALGSGRVPLRRVAVSR-DESRAAGISADGDSVYVGSLTPGASIGVHSWGVT-ADGRL 411 (599)
T ss_pred CCceEEEeccccccCCCcccCCCccCCCCCCccceEEcC-CCceEEEEcCCCcEEEEeccCCCCccccccceee-ccCcc
Q ss_pred EEEEEeCCCCEEEEEeC----CCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeC----CeEEE
Q 001352 891 TGLVFSDALNILVSSGG----DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE----THLAI 962 (1093)
Q Consensus 891 ~~l~~s~dg~~l~s~s~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d----~~i~v 962 (1093)
+.-.|.++| .+-+... ...+++..- +++....... .+.+.. |+.+..|+||..+|.-.+ ++|.|
T Consensus 412 t~PS~d~~g-~vWtvd~~~~~~~vl~v~~~-~G~~~~V~~~-~l~g~~-----I~~lrvSrDG~RvAvv~~~~g~~~v~v 483 (599)
T PRK13613 412 TSPSWDGRG-DLWVVDRDPADPRLLWLLQG-DGEPVEVRTP-ELDGHR-----VVAVRVARDGVRVALIVEKDGRRSLQI 483 (599)
T ss_pred cCCcCcCCC-CEEEecCCCCCceEEEEEcC-CCcEEEeecc-ccCCCE-----eEEEEECCCccEEEEEEecCCCcEEEE
Q ss_pred EEcCCcc-------eeeeeecCCCCCEEEEEEccCCCEEEEEeCCC-cEEEEEcCCCceEEEeccccccCCCCCCCccce
Q 001352 963 YEAEELT-------CLKQWFPISSVPISQATFSCDCRMVFTSFVDG-TLSIHEASNLEVQCRILSTAYLRPTTSCLHVYP 1034 (1093)
Q Consensus 963 wd~~~~~-------~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg-~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1034 (1093)
--+.... ....+...... +.++.|..++.+++.+...+ ...+|-+.-+-.............. ..
T Consensus 484 a~V~R~~~G~~~l~~~~~l~~~l~~-v~~~~W~~~~sL~Vlg~~~~~~~~v~~v~vdG~~~~~~~~~~v~~~------~~ 556 (599)
T PRK13613 484 GRIVRDAKAVVSVEEFRSLAPELED-VTDMSWAGDSQLVVLGREEGGVQQARYVQVDGSTPPASAPAAVTGV------ES 556 (599)
T ss_pred EEEEeCCCCcEEeeccEEeccCCCc-cceeEEcCCCEEEEEeccCCCCcceEEEecCCcCcccccccCCCCe------eE
Q ss_pred eEEEeCCCCCCEEEEEeCCCcEEEEecCCCCCCcc
Q 001352 1035 HAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWA 1069 (1093)
Q Consensus 1035 ~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~~~~~ 1069 (1093)
+..+-.+ +..|+++..++.|... .++..|.
T Consensus 557 ia~~~~~--~~~~v~~~~~~~v~~~---~~g~~W~ 586 (599)
T PRK13613 557 ITASEDE--RLPLVAGTSEDGIVRL---SSGLQWQ 586 (599)
T ss_pred EEecCCC--CceEEEEecCCCeEEe---cCCCcce
No 492
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=84.15 E-value=53 Score=33.62 Aligned_cols=166 Identities=8% Similarity=0.078 Sum_probs=90.9
Q ss_pred eeeccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEEECCC-CCCeEEEEEcCCCCCEEEEEeCCCeEE
Q 001352 792 FMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP-SPTATSLAFNPHDNNVIAIGMDDSTIL 870 (1093)
Q Consensus 792 ~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~s~~d~~~lasg~~dg~i~ 870 (1093)
...+.++............|.++|.+-.++..|.---.|..+ ..+..+... ...-..++..| ||.+-++.-.+..|-
T Consensus 136 vt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atp-dGsvwyaslagnaia 213 (353)
T COG4257 136 VTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPAR-NVISVFPAPQGGGPYGICATP-DGSVWYASLAGNAIA 213 (353)
T ss_pred eEEeecccccCCCcccceeeCCCccEEEeeccccceecCccc-CceeeeccCCCCCCcceEECC-CCcEEEEeccccceE
Confidence 334444443356677788999999999988643211112111 122233222 23456788889 888888777777787
Q ss_pred EEEcCCcc--eeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccC
Q 001352 871 IYNARSSE--VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 948 (1093)
Q Consensus 871 iwd~~~~~--~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 948 (1093)
..|..++. .+..-.+....-..+.-+|.|+.-+|....+.+.-+|-+... ......+.... .-.++.....
T Consensus 214 ridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s---W~eypLPgs~a----rpys~rVD~~ 286 (353)
T COG4257 214 RIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS---WIEYPLPGSKA----RPYSMRVDRH 286 (353)
T ss_pred EcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc---ceeeeCCCCCC----CcceeeeccC
Confidence 77877662 222222212234445556778888887777777777766532 11122221111 2445555555
Q ss_pred CCEEEE-EeCCeEEEEEcC
Q 001352 949 QTRFLL-VHETHLAIYEAE 966 (1093)
Q Consensus 949 g~~l~~-~~d~~i~vwd~~ 966 (1093)
++.-+. ...+.|.-+|.+
T Consensus 287 grVW~sea~agai~rfdpe 305 (353)
T COG4257 287 GRVWLSEADAGAIGRFDPE 305 (353)
T ss_pred CcEEeeccccCceeecCcc
Confidence 554444 333445555544
No 493
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=84.06 E-value=69 Score=34.90 Aligned_cols=111 Identities=8% Similarity=-0.029 Sum_probs=55.3
Q ss_pred CCCEEEEEeCCC-----cEEEEeCCCCcee-eeeeeecCCCcccCCCCceEEEEccCCCEEEEEe------CCeEEEEEc
Q 001352 898 ALNILVSSGGDA-----QIFVWDVDGWGIQ-TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH------ETHLAIYEA 965 (1093)
Q Consensus 898 dg~~l~s~s~dg-----~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~------d~~i~vwd~ 965 (1093)
++++++.|+.++ .+..+|+.+.+.. ....+...... .-...+..-++++.+.|. ...+..||+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~-----~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~ 146 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFT-----FENGSACYKDGTLYVGGGNRNGKPSNKSYLFNL 146 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcC-----ccCceEEEECCEEEEEeCcCCCccCceEEEEcC
Confidence 566777777643 4666677664421 00111111110 111222234566656542 136888998
Q ss_pred CCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCc----EEEEEcCCCce
Q 001352 966 EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT----LSIHEASNLEV 1013 (1093)
Q Consensus 966 ~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~----v~vwd~~~~~~ 1013 (1093)
.+.+-...-......+....+...++++.+.|+.++. +..||..+.+.
T Consensus 147 ~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 147 ETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 8765432211111122233334557788888887643 45788877654
No 494
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=84.01 E-value=26 Score=40.55 Aligned_cols=194 Identities=14% Similarity=0.132 Sum_probs=102.1
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 001352 845 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC 924 (1093)
Q Consensus 845 ~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~ 924 (1093)
..++++.-+| +++-++.+..||+|++|+....+...... ...+-..+.|...| |+++..|+.+.-|.-++--..
T Consensus 15 e~~~aiqshp-~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg--l~~~tsdrr~la~~~dgvvqq-- 88 (1636)
T KOG3616|consen 15 EFTTAIQSHP-GGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG--LVTATSDRRALAWKEDGVVQQ-- 88 (1636)
T ss_pred ceeeeeeecC-CCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc--eEEEeccchhheeeccCcchh--
Confidence 3567777889 99999999999999999987654322211 22344556776554 566666777777765441100
Q ss_pred eeeecCCCcccCCCCceEEEEccCC-------------------------CEEEE-EeCCeEEEEEcCCcceeeeeecCC
Q 001352 925 RSLQTPDGVMTLAPSETHIQFHKDQ-------------------------TRFLL-VHETHLAIYEAEELTCLKQWFPIS 978 (1093)
Q Consensus 925 ~~~~~~~~~~~~~~~v~~~~~s~dg-------------------------~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h 978 (1093)
.+.-.........++...|.. ++-.+ .....|.+-|+.++..... . .|
T Consensus 89 ----qfdyndqsekefss~~cdptaqnvvgtlcggv~q~dcclrr~i~knkfe~tyv~pshvilkdlsn~trt~l-~-s~ 162 (1636)
T KOG3616|consen 89 ----QFDYNDQSEKEFSSILCDPTAQNVVGTLCGGVEQFDCCLRRGILKNKFELTYVAPSHVILKDLSNDTRTNL-I-SH 162 (1636)
T ss_pred ----hccccchhhhhccceecCchhhhhhhhhccceeeehHHHHhHHHhccceeEEeccceeeeecccCCceEee-e-ec
Confidence 000000000012222222221 22222 3344566666666554432 2 23
Q ss_pred -CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCcc---ceeEEEeCCCCCCEEEEEeCCC
Q 001352 979 -SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHV---YPHAIAAHPLKPTQFAVGLTNG 1054 (1093)
Q Consensus 979 -~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~~~~~p~d~~~l~~~~~dg 1054 (1093)
.-.|..+..-...+|++. -...+|.+=|+.+.+.. -..|...+.|..-. ..+|+.|.. ..-.++-=+.|+
T Consensus 163 ~g~aidelkilgkdryli~-~ts~siii~d~es~rfs----ei~wqgsgg~ekfffd~~n~cli~na-geltlveyg~d~ 236 (1636)
T KOG3616|consen 163 KGLAIDELKILGKDRYLIA-HTSESIIIADLESNRFS----EIAWQGSGGHEKFFFDFENCCLIFNA-GELTLVEYGNDD 236 (1636)
T ss_pred CCcchhhhhhccccceEEe-eccccEEEeecccchhh----hhhcccCCCcceeeeecCcEEEEEec-CeeEEEEecCCC
Confidence 345555555566677774 44567888888876443 33354444333221 135666765 234455445555
Q ss_pred cE
Q 001352 1055 EV 1056 (1093)
Q Consensus 1055 ~v 1056 (1093)
++
T Consensus 237 sl 238 (1636)
T KOG3616|consen 237 SL 238 (1636)
T ss_pred cc
Confidence 54
No 495
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=83.12 E-value=5.3 Score=38.77 Aligned_cols=31 Identities=39% Similarity=0.606 Sum_probs=25.8
Q ss_pred CCeEEEEECCCC------CEEEEEEcCCEEEEEEccC
Q 001352 398 VSVNRVVWSPDG------SLLGVAYSKHIVQLYAYHG 428 (1093)
Q Consensus 398 ~~V~~v~~s~dg------~~las~~~d~~i~iwd~~~ 428 (1093)
..|.+++|||-| -+||+.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 389999999954 4788889999999998664
No 496
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=83.05 E-value=4.7 Score=27.84 Aligned_cols=29 Identities=10% Similarity=0.202 Sum_probs=24.1
Q ss_pred CCCceEEEEEccCCcEEEEecCCCceeEE
Q 001352 345 PVQHTLLLVGTNVGDTGLWDVNSGQKLFI 373 (1093)
Q Consensus 345 pdg~~llasg~~dg~i~iwd~~~~~~~~~ 373 (1093)
||+++++++...+++|.++|..+++.+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~ 29 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIAT 29 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEE
Confidence 68888787777789999999998877654
No 497
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.88 E-value=30 Score=43.83 Aligned_cols=32 Identities=28% Similarity=0.573 Sum_probs=27.2
Q ss_pred CceeeeecCCCceEEEEEccCCcEEEEecCCCc
Q 001352 337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ 369 (1093)
Q Consensus 337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~ 369 (1093)
....++|+|.-+ ++|.|+..|.|.++-...-+
T Consensus 37 ~~~~~afD~~q~-llai~t~tg~i~~yg~~~ve 68 (993)
T KOG1983|consen 37 TPSALAFDPTQG-LLAIGTRTGAIKIYGQPGVE 68 (993)
T ss_pred CCcceeeccccc-eEEEEEecccEEEecccceE
Confidence 667899999998 79999999999999865543
No 498
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=82.75 E-value=4.2 Score=47.91 Aligned_cols=135 Identities=13% Similarity=0.120 Sum_probs=78.2
Q ss_pred CceeeeecCC-CceEEEEEccCCcEEEEecCCCceeEEeeeeeeeccc--ccceeeeeeecCCCCCeEEEEEC--CCCCE
Q 001352 337 SPMSMDFHPV-QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGA--CSMLFKTALVRDPGVSVNRVVWS--PDGSL 411 (1093)
Q Consensus 337 ~V~~~~~spd-g~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~h~~~V~~v~~s--~dg~~ 411 (1093)
.|+.+....= +..+|+.+..||.|.+|.+++=....... .-+... .....+..+...-...+..++++ ...++
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~--~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rl 179 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERF--SEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRL 179 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhh--ccccccccccccCCCCeEeecCCceeEEEEEecCcceE
Confidence 4555554432 23478888999999999774310000000 000000 00001111122245588999998 78889
Q ss_pred EEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCC----cEEEEEEcCCCcEEEEEC
Q 001352 412 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK----QISVITCGDDKTIKVWDA 473 (1093)
Q Consensus 412 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~----~l~l~s~~~d~~i~vwd~ 473 (1093)
||+++....|.||-......-.....-..|...|.+|+|.++.. ...+++++-.|.+.+|++
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 99998888888886655211111111113667899999987651 136888999999999886
No 499
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=82.41 E-value=8 Score=37.54 Aligned_cols=31 Identities=13% Similarity=0.235 Sum_probs=26.3
Q ss_pred CCeEEEEEeCCC------CEEEEEeCCCcEEEEeCCC
Q 001352 888 KRVTGLVFSDAL------NILVSSGGDAQIFVWDVDG 918 (1093)
Q Consensus 888 ~~V~~l~~s~dg------~~l~s~s~dg~i~iwd~~~ 918 (1093)
..|.+++|||-| .+||+...++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 479999999954 5788999999999998775
No 500
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=81.62 E-value=81 Score=33.93 Aligned_cols=241 Identities=14% Similarity=0.003 Sum_probs=116.9
Q ss_pred cCCCceEEEEEccCCcEEEEecCC--CceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEc-CCE
Q 001352 344 HPVQHTLLLVGTNVGDTGLWDVNS--GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS-KHI 420 (1093)
Q Consensus 344 spdg~~llasg~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~-d~~ 420 (1093)
.-+++ .|+.|+.+|... -+... ++..+ -.+...|+++...+.-+.|++-++ ...
T Consensus 10 ~~~~~-~lL~GTe~Gly~-~~~~~~~~~~~k---------------------l~~~~~v~q~~v~~~~~lLi~Lsgk~~~ 66 (302)
T smart00036 10 TCDGK-WLLVGTEEGLYV-LNISDQPGTLEK---------------------LIGRRSVTQIWVLEENNVLLMISGKKPQ 66 (302)
T ss_pred ccCCc-EEEEEeCCceEE-EEcccCCCCeEE---------------------ecCcCceEEEEEEhhhCEEEEEeCCcce
Confidence 33444 488888888544 44543 22222 125678999999998877776653 345
Q ss_pred EEEEEccCCCc-----------ccc-eEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCC----ceeEEe--
Q 001352 421 VQLYAYHGGSD-----------ARQ-QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSF-- 482 (1093)
Q Consensus 421 i~iwd~~~~~~-----------~~~-~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~----~~~~~~-- 482 (1093)
++++++..-.. .+. ....-+|......++... ++...++.+....+|.++.+... ...+.+
T Consensus 67 L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~-~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~ 145 (302)
T smart00036 67 LYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVN-GKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFL 145 (302)
T ss_pred EEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEc-CCCcEEEEEEcCCeEEEEEccChhhhhhhhccccc
Confidence 99999843221 000 001124444444444443 33324455555667777654322 111111
Q ss_pred -e-cCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCC--CC--c-eE--EecCCCCceEEEEEccCCCEEEEEecCCC
Q 001352 483 -E-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS--LG--A-RV--DYDAPGLGCTRMAYSANGRRLFSCGTSKE 553 (1093)
Q Consensus 483 -~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~--~~--~-~~--~~~~~~~~v~~~~~s~d~~~l~~~~~~~~ 553 (1093)
. .-..++..+..........+..|+..+...++++.. .. . .. ..........++..-+++.+|++-
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~e~Llc~----- 220 (302)
T smart00036 146 FPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPRDEFLLCY----- 220 (302)
T ss_pred ccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEECCCeEEEEE-----
Confidence 0 112233333333333344666776643344444432 10 0 00 011111023333334455565554
Q ss_pred CceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEec
Q 001352 554 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 619 (1093)
Q Consensus 554 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 619 (1093)
+......|.......+...-. -.....++++. ..++++-+.+ .|.|+++.+++.++++..
T Consensus 221 -~~~~v~Vn~~G~~~~r~~~l~--w~~~p~~~~~~--~pyll~~~~~-~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 221 -DEFGVFVNLYGKRRSRNPILH--WEFMPESFAYH--SPYLLAFHDN-GIEIRSIKTGELLQELAD 280 (302)
T ss_pred -CcEEEEEeCCCCccccceEEE--cCCcccEEEEE--CCEEEEEcCC-cEEEEECCCCceEEEEec
Confidence 223444454321221111100 01345566665 3677776654 599999999999888864
Done!